Psyllid ID: psy10889

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDNVVDKIGKKYKIKSNRGTSNTKFWQK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHccccEEHHHHHccccHHcccccccHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHccccEEEHHHHHccHHHHHHHccccHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHccEEEEccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
mvaekasgvgtnpLEQFVLLAKTTKGAAAVELIKQVLEapgifmfkelidmplikeldtsphagYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSleskcipydkllkeldisnvrDLEDLIIEAIYSDiihgkldqrnssleldfaigrdinpgdvtNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLknqtnqsqdtddmmgsdnvvdkigkkykiksnrgtsntkfwqk
Flexible Loop (DISEMBL)
mvaekasgvgtnplEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQtnqsqdtddmmgsdnvvdkigkkykiksnrgtsntkfwqk
Low Complexity Region (SEG)
MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDNVVDKIGKKYKIKSNRGTSNTKFWQK
Disordered region (IsUnstruct)
*************LEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIG*******************I**************************************************
Disordered Region (DISOPRED)
****************FVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQ************************************************************************
Disordered Region (DISEMBL)
*********GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGK*********AHSNAIDMEILNIKKSLK***********MMGSDNVVDKIGKKYKIKSNRGTSNTKFWQK
Disordered Region (DISPRO)
**********TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKN*****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDNVVDKIGKKYKIKSNRGTSNTKFWQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q2KI56	264	COP9 signalosome complex	yes	N/A	0.820	0.829	0.506	1e-59
Q9H9Q2	264	COP9 signalosome complex	yes	N/A	0.820	0.829	0.506	2e-59
Q8BV13	264	COP9 signalosome complex	yes	N/A	0.823	0.833	0.504	3e-59
Q5R762	275	COP9 signalosome complex	no	N/A	0.782	0.76	0.502	2e-57
Q9UBW8	275	COP9 signalosome complex	no	N/A	0.782	0.76	0.502	2e-57
Q9CZ04	275	COP9 signalosome complex	no	N/A	0.782	0.76	0.502	4e-57
Q9V4S8	278	COP9 signalosome complex	yes	N/A	0.838	0.805	0.475	2e-54
Q55BD5	259	COP9 signalosome complex	yes	N/A	0.943	0.972	0.396	7e-42
Q94JU3	260	COP9 signalosome complex	no	N/A	0.782	0.803	0.372	8e-35
Q7SGS1	417	COP9 signalosome complex	N/A	N/A	0.722	0.462	0.311	5e-25

>sp|Q2KI56|CSN7B_BOVIN COP9 signalosome complex subunit 7b OS=Bos taurus GN=COPS7B PE=2 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 151/221 (68%), Gaps = 2/221 (0%)

Query: 11  TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
           +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct: 9   SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68

Query: 71  LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
           LFA+GTY DY+  KE   LPE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct: 69  LFAYGTYPDYIANKE--SLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126

Query: 131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
           +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct: 127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186

Query: 191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS 231
            IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S
Sbjct: 187 GIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTLKATASSS 227

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.
Bos taurus (taxid: 9913)

>sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 151/221 (68%), Gaps = 2/221 (0%)

Query: 11  TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
           +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct: 9   SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68

Query: 71  LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
           LFA+GTY DY+  KE   LPE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct: 69  LFAYGTYPDYIANKE--SLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126

Query: 131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
           +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct: 127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186

Query: 191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS 231
            IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S
Sbjct: 187 GIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSS 227

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Homo sapiens (taxid: 9606)

>sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b OS=Mus musculus GN=Cops7b PE=1 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/222 (50%), Positives = 151/222 (68%), Gaps = 2/222 (0%)

Query: 10  GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
            +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL
Sbjct: 8   SSNLLEQFILLAKGTSGSALTTLISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLL 67

Query: 70  KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
            LFA+GTY DY+  KE   LPE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+
Sbjct: 68  NLFAYGTYPDYIANKE--SLPELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNL 125

Query: 130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
           R+LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL
Sbjct: 126 RELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVL 185

Query: 190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS 231
             IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S
Sbjct: 186 LGIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTLKATASSS 227

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Mus musculus (taxid: 10090)

>sp|Q5R762|CSN7A_PONAB COP9 signalosome complex subunit 7a OS=Pongo abelii GN=COPS7A PE=2 SV=1

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 145/211 (68%), Gaps = 2/211 (0%)

Query: 15  EQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAH 74
           EQF+LLAK+ KGAA   LI QVLEAPG+++F EL+DMP ++EL  S  A  + LL +FA+
Sbjct: 13  EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAY 72

Query: 75  GTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLED 134
           GTY DYL   E   LP +T+ QK KL++L++VTL+ + KCIPY  LL+ L + NVR LED
Sbjct: 73  GTYADYLA--EARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130

Query: 135 LIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIET 194
           L+IEA+Y+D++ G LDQRN  LE+D++IGRDI   D++ +    Q W   C  VL  IE 
Sbjct: 131 LVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEE 190

Query: 195 QIGKANSEKHQHLAHSNAIDMEILNIKKSLK 225
           Q+ +AN  K Q L     I+ E+ N+KK++K
Sbjct: 191 QVSRANQHKEQQLGLKQQIESEVANLKKTIK 221

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Pongo abelii (taxid: 9601)

>sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a OS=Homo sapiens GN=COPS7A PE=1 SV=1

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 145/211 (68%), Gaps = 2/211 (0%)

Query: 15  EQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAH 74
           EQF+LLAK+ KGAA   LI QVLEAPG+++F EL+DMP ++EL  S  A  + LL +FA+
Sbjct: 13  EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAY 72

Query: 75  GTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLED 134
           GTY DYL   E   LP +T+ QK KL++L++VTL+ + KCIPY  LL+ L + NVR LED
Sbjct: 73  GTYADYLA--EARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130

Query: 135 LIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIET 194
           L+IEA+Y+D++ G LDQRN  LE+D++IGRDI   D++ +    Q W   C  VL  IE 
Sbjct: 131 LVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEE 190

Query: 195 QIGKANSEKHQHLAHSNAIDMEILNIKKSLK 225
           Q+ +AN  K Q L     I+ E+ N+KK++K
Sbjct: 191 QVSRANQHKEQQLGLKQQIESEVANLKKTIK 221

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Homo sapiens (taxid: 9606)

>sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a OS=Mus musculus GN=Cops7a PE=1 SV=2

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 144/211 (68%), Gaps = 2/211 (0%)

Query: 15  EQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAH 74
           EQF+LLAK+ KGAA   LI QVLEAPG+++F EL+DMP ++EL  S  A  + LL +FA+
Sbjct: 13  EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAY 72

Query: 75  GTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLED 134
           GTY DYL   E   LP +T  QK KL++L++VTL+ + KCIPY  LL+ L + NVR LED
Sbjct: 73  GTYADYLA--EARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLED 130

Query: 135 LIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIET 194
           L+IEA+Y+D++ G LDQRN  LE+D++IGRDI   D++ +    Q W   C  VL  IE 
Sbjct: 131 LVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIEE 190

Query: 195 QIGKANSEKHQHLAHSNAIDMEILNIKKSLK 225
           Q+ +AN  K Q L     I+ E+ N+KK++K
Sbjct: 191 QVSRANQHKEQQLGLKQQIESEVANLKKTIK 221

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, JUN, I-kappa-B-alpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Mus musculus (taxid: 10090)

>sp|Q9V4S8|CSN7_DROME COP9 signalosome complex subunit 7 OS=Drosophila melanogaster GN=CSN7 PE=1 SV=2

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/229 (47%), Positives = 158/229 (68%), Gaps = 5/229 (2%)

Query: 14  LEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFA 73
           LE+F +LAK++ GAA +++I+Q LEAP +F+F EL+  P + +L   P + ++  L LFA
Sbjct: 20  LEKFCVLAKSSTGAALLDVIRQALEAPNVFVFGELLAEPSVLQLKDGPDSKHFETLNLFA 79

Query: 74  HGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLE 133
           +GTY++Y  Q E  K  E+T   +KKLQ+LTIV+L++++K IPY  LL EL+I NVR LE
Sbjct: 80  YGTYKEYRAQPE--KFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLE 137

Query: 134 DLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIE 193
           D+IIEAIY+DIIHGKL Q    LE+D+A GRDI PG    ++   QAW +SC +V   IE
Sbjct: 138 DIIIEAIYADIIHGKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSNCIE 197

Query: 194 TQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
            QI  AN+EK + L +   ++ +++N+KK LK+QT+   D+D+ M  D 
Sbjct: 198 MQIKYANAEKSKRLINKERVEQDLINLKKVLKSQTS---DSDESMQIDT 243

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. The CSN complex plays an essential role in oogenesis and embryogenesis and is required for proper photoreceptor R cell differentiation and promote lamina glial cell migration or axon targeting. It also promotes Ubl-dependent degradation of cyclin E (CycE) during early oogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q55BD5|CSN7_DICDI COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum GN=csn7 PE=1 SV=1

 Score =  171 bits (432), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/255 (39%), Positives = 151/255 (59%), Gaps = 3/255 (1%)

Query: 1   MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTS 60
           M  ++ +    N L+QFV+LAK++KG A V +I++ L  P +F+F EL+DMP +++L  +
Sbjct: 1   MTTQQETLTDGNALKQFVVLAKSSKGRAIVSIIEKALNHPSVFVFGELLDMPNVQQLKET 60

Query: 61  PHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKL 120
               YY LL +FA+G++ DY  +K+ L  P++T     KL+ LTIV LS  S  IPY  L
Sbjct: 61  EFKNYYDLLLIFAYGSFIDYKNKKDSL--PQLTPQMITKLKQLTIVFLSSTSNVIPYSVL 118

Query: 121 LKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQA 180
            ++++I+NVR+LEDLII++IY +II GKLDQ+N  LE+DF+IGRD+ P  + +MI     
Sbjct: 119 QEQIEITNVRELEDLIIDSIYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNN 178

Query: 181 WSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQ-DTDDMMG 239
           WS +   +L  I   I  ++    Q+       + +    K + KN +   Q   D M  
Sbjct: 179 WSSTSQKLLDDISGLITHSDKVHLQYRKEKEEFESKFEIAKLNTKNDSPAEQLYYDSMEY 238

Query: 240 SDNVVDKIGKKYKIK 254
           SD V  K G K K K
Sbjct: 239 SDEVRMKKGPKIKGK 253

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Dictyostelium discoideum (taxid: 44689)

>sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1

 Score =  147 bits (371), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 125/212 (58%), Gaps = 3/212 (1%)

Query: 14  LEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFA 73
           ++Q V  A T K  A   LI +    P +F F E++ +P + +L+ +  + Y  LL+LFA
Sbjct: 11  IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70

Query: 74  HGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLE 133
           HGT+ DY  +    +LP ++  Q  KL+ LT++TL+  +K +PYD L+ ELD+SNVR+LE
Sbjct: 71  HGTWGDY--KCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELE 128

Query: 134 DLII-EAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAI 192
           D +I E +Y+ I+ GKLDQ     E+ FA GRD+ PG + NM+     W ++  N+L +I
Sbjct: 129 DFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISI 188

Query: 193 ETQIGKANSEKHQHLAHSNAIDMEILNIKKSL 224
           + +I  A++       H    +  +  +KKSL
Sbjct: 189 QDKIKWADNMSEMDKKHRKEAEEGVEEVKKSL 220

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7SGS1|CSN7A_NEUCR COP9 signalosome complex subunit 7a OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-7a PE=1 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 25/218 (11%)

Query: 12  NPLEQFVLLAKT-TKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTS-PHAGYYHLL 69
           N LE F++L+K+ T   AA +L+ +V  AP  F+F EL+  P I+ L+ S   + Y  LL
Sbjct: 8   NALEPFIVLSKSATSPRAAADLVTRVTSAPNTFIFTELLQTPQIQSLEYSHEFSSYLTLL 67

Query: 70  KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTL-SLESKCIP------------ 116
           ++F+HGTY DY+       LP +   QK KL+ L+++TL + +   +P            
Sbjct: 68  QIFSHGTYADYIANAS--ALPALNDDQKLKLRQLSLLTLVANDGSNVPLDYDAMQRENNQ 125

Query: 117 -------YDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD-FAIGRDINP 168
                  Y  L + L++S+ R+LE+L+I AIY+ +I G+LD  N  ++++  A  RD+  
Sbjct: 126 AQPPNQSYASLTRRLELSSARELEELVISAIYAGLIEGQLDPANEMVQINSVAALRDVPA 185

Query: 169 GDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQH 206
             V  +++  Q W+  C   L+ +E  +     E  + 
Sbjct: 186 RGVNGLLSSLQGWAGRCQATLQELEATMANLRDEADRR 223

Component of the COP9 signalosome (CSN) complex that acts as an regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunit of SCF-type E3 ubiquitin-protein ligase complexes (By similarity). The CSN complex is involved in the regulation of the circadian clock through its control of the stability of the SCF(FWD1) complex.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
242023602	274	COP9 signalosome complex subunit 7A, put	0.985	0.959	0.568	1e-79
91093179	269	PREDICTED: similar to cop9 complex subun	0.981	0.973	0.549	2e-73
158300156	278	AGAP012398-PA [Anopheles gambiae str. PE	0.940	0.902	0.538	1e-72
94469158	282	COP9 signalosome subunit CSN7 [Aedes aeg	0.857	0.812	0.553	6e-70
157107462	274	cop9 complex subunit 7a [Aedes aegypti]	0.857	0.835	0.553	6e-70
157107460	282	cop9 complex subunit 7a [Aedes aegypti]	0.857	0.812	0.553	6e-70
321477877	275	hypothetical protein DAPPUDRAFT_206599 [	0.823	0.8	0.581	6e-70
345497549	297	PREDICTED: COP9 signalosome complex subu	0.857	0.771	0.570	7e-70
170039407	277	cop9 complex subunit 7a [Culex quinquefa	0.850	0.819	0.554	8e-70
170068114	281	COP9 signalosome complex subunit 7 [Cule	0.850	0.807	0.554	8e-70

>gi|242023602|ref|XP_002432221.1| COP9 signalosome complex subunit 7A, putative [Pediculus humanus corporis] gi|212517618|gb|EEB19483.1| COP9 signalosome complex subunit 7A, putative [Pediculus humanus corporis]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/269 (56%), Positives = 196/269 (72%), Gaps = 6/269 (2%)

Query: 1   MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTS 60
           ++  K S  G+NPLEQFVLLAK+TKGAAA+ELIKQVLEAPG+ +F EL+DMP I ELD  
Sbjct: 6   IIENKNSATGSNPLEQFVLLAKSTKGAAALELIKQVLEAPGVHVFGELLDMPNILELDNG 65

Query: 61  PHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKL 120
           PH+ Y++ L LFA+GTY+ YL  K   K  E+T +QKKKLQ+LTIVTL+ + KCIPY  L
Sbjct: 66  PHSNYFNTLNLFAYGTYRQYLNNKS--KFIELTDIQKKKLQHLTIVTLATKMKCIPYSVL 123

Query: 121 LKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQA 180
           L+ELD+ NVRDLEDLIIEAIYSDII GKLDQ+NS LE+D+AIGRDI P D+  ++   Q 
Sbjct: 124 LQELDVKNVRDLEDLIIEAIYSDIIQGKLDQKNSQLEIDYAIGRDIRPEDIGAIVNTLQE 183

Query: 181 WSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGS 240
           W DSC  VL  IE+Q+ KAN+EK+Q + H  AI+ EI NIKK+LK    ++ +T +   S
Sbjct: 184 WCDSCEAVLACIESQVNKANNEKNQKIKHREAIEQEIANIKKTLKTNAVENDETIN-NES 242

Query: 241 DNVVDKIGKKYK---IKSNRGTSNTKFWQ 266
              + + G+K K   +KS     ++KFWQ
Sbjct: 243 REALAQTGEKTKKPVVKSKGTRGSSKFWQ 271

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093179|ref|XP_968242.1| PREDICTED: similar to cop9 complex subunit 7a [Tribolium castaneum] gi|270012960|gb|EFA09408.1| hypothetical protein TcasGA2_TC004326 [Tribolium castaneum]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/273 (54%), Positives = 195/273 (71%), Gaps = 11/273 (4%)

Query: 1   MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTS 60
           MV EK    G N LEQFVLL+K+TKGAA  ELIKQVLEAPG+++F EL+ M  I+EL  +
Sbjct: 1   MVIEKNPFPG-NALEQFVLLSKSTKGAACSELIKQVLEAPGVYVFGELLHMQNIEELSNT 59

Query: 61  PHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKL 120
           P   +Y+ L LFA+GTY+DYL  K++L   E++  QKKKLQ+LTIVTL+ +SKCIPY+ L
Sbjct: 60  PQKNFYNTLNLFAYGTYKDYLANKKDL--IELSPAQKKKLQHLTIVTLATKSKCIPYNTL 117

Query: 121 LKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQA 180
           L+EL I+NVRDLEDLIIEAIY+DIIHGKLDQ+NS LE+D+AIGRDI P D+  ++   Q 
Sbjct: 118 LEELGITNVRDLEDLIIEAIYADIIHGKLDQKNSQLEVDYAIGRDIRPEDINVIVNCLQD 177

Query: 181 WSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQD-TDDMMG 239
           W  +C  VL  +ETQI +AN+EK++ +     ++ EI NIKK+LK Q  +  D TD+ M 
Sbjct: 178 WCSACEGVLACVETQIHRANNEKNKSMLRKAEVEQEISNIKKTLKTQLQERSDGTDEAMA 237

Query: 240 SDN-----VVDKIGKKYKIKSNRGTSNTKFWQK 267
           +DN     + +K  K  KIK  R +S  KFW K
Sbjct: 238 TDNREAAAISEKGKKSTKIKGIRHSS--KFWLK 268

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300156|ref|XP_320160.4| AGAP012398-PA [Anopheles gambiae str. PEST] gi|157013022|gb|EAA00161.4| AGAP012398-PA [Anopheles gambiae str. PEST]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 141/262 (53%), Positives = 186/262 (70%), Gaps = 11/262 (4%)

Query: 12  NPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKL 71
           NP+EQ+VLLAK  KGAA  ELIKQVLEAPG+ +F EL+ MP IKEL   PHA YY+ L L
Sbjct: 22  NPIEQYVLLAKGAKGAACTELIKQVLEAPGVHVFGELLAMPNIKELQNGPHANYYNTLNL 81

Query: 72  FAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRD 131
           FA+GTY+ YL+   + KL +++   +KKLQ+LT+V+L+++SKCIPY++LL ELDI NVR 
Sbjct: 82  FAYGTYRQYLEN--QTKLIQLSPAMQKKLQHLTVVSLAIKSKCIPYNELLDELDIKNVRV 139

Query: 132 LEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKA 191
           LEDLIIEAIY+D+IHGKLDQ+N  LE+D+AIGRDI  GDV  + +  Q WSDSC  +L  
Sbjct: 140 LEDLIIEAIYADVIHGKLDQKNKQLEVDYAIGRDIRKGDVKEIASTLQEWSDSCETILLC 199

Query: 192 IETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDNVVDKIG--- 248
           +ETQI +AN+EK + + H  +ID EI N+KK++K Q  +S   D+ M +D   D +G   
Sbjct: 200 LETQINRANTEKQKRIKHKESIDQEIANLKKAIKTQAVES---DEAMATDTCRDIVGGLD 256

Query: 249 ---KKYKIKSNRGTSNTKFWQK 267
              K  K KS +G+   K   K
Sbjct: 257 LRKKPAKSKSLKGSGPGKSVSK 278

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469158|gb|ABF18428.1| COP9 signalosome subunit CSN7 [Aedes aegypti]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/233 (55%), Positives = 176/233 (75%), Gaps = 4/233 (1%)

Query: 10  GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
             NP+EQ+VLL+K+ KGAA +ELIKQVLEAPG+++F EL+ MP I EL T P+A YY+ L
Sbjct: 19  ANNPIEQYVLLSKSAKGAACLELIKQVLEAPGVYVFGELLAMPNIAELQTGPNASYYNTL 78

Query: 70  KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
            LFA+GTY+ YL+ + +L   E+T + +KKLQ+LTIV+L++++KCIPY +LL+ELDI +V
Sbjct: 79  NLFAYGTYRQYLENQAQLI--ELTPVMRKKLQHLTIVSLAIKTKCIPYKELLEELDIKHV 136

Query: 130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
           RDLED+IIEAIY DIIHGKLDQ+   LE+D+AIGRDI  G+V+ + +  + W DSC  +L
Sbjct: 137 RDLEDMIIEAIYGDIIHGKLDQKKQQLEVDYAIGRDIRTGNVSELASFLEEWCDSCETIL 196

Query: 190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
             +E QI +ANSEK + L H  AID EI N+KK +K Q     D+D+ M +D+
Sbjct: 197 ACLENQIHRANSEKQKRLKHKEAIDTEITNLKKLIKVQA--GNDSDEAMATDS 247

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107462|ref|XP_001649790.1| cop9 complex subunit 7a [Aedes aegypti] gi|108884076|gb|EAT48301.1| AAEL000635-PA [Aedes aegypti]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/233 (55%), Positives = 176/233 (75%), Gaps = 4/233 (1%)

Query: 10  GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
             NP+EQ+VLL+K+ KGAA +ELIKQVLEAPG+++F EL+ MP I EL T P+A YY+ L
Sbjct: 19  ANNPIEQYVLLSKSAKGAACLELIKQVLEAPGVYVFGELLAMPNIAELQTGPNASYYNTL 78

Query: 70  KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
            LFA+GTY+ YL+ + +L   E+T + +KKLQ+LTIV+L++++KCIPY +LL+ELDI +V
Sbjct: 79  NLFAYGTYRQYLENQAQL--IELTPVMRKKLQHLTIVSLAIKTKCIPYKELLEELDIKHV 136

Query: 130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
           RDLED+IIEAIY DIIHGKLDQ+   LE+D+AIGRDI  G+V+ + +  + W DSC  +L
Sbjct: 137 RDLEDMIIEAIYGDIIHGKLDQKKQQLEVDYAIGRDIRTGNVSELASFLEEWCDSCETIL 196

Query: 190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
             +E QI +ANSEK + L H  AID EI N+KK +K Q     D+D+ M +D+
Sbjct: 197 ACLENQIHRANSEKQKRLKHKEAIDTEITNLKKLIKVQA--GNDSDEAMATDS 247

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107460|ref|XP_001649789.1| cop9 complex subunit 7a [Aedes aegypti] gi|108884075|gb|EAT48300.1| AAEL000635-PC [Aedes aegypti]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/233 (55%), Positives = 176/233 (75%), Gaps = 4/233 (1%)

Query: 10  GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
             NP+EQ+VLL+K+ KGAA +ELIKQVLEAPG+++F EL+ MP I EL T P+A YY+ L
Sbjct: 19  ANNPIEQYVLLSKSAKGAACLELIKQVLEAPGVYVFGELLAMPNIAELQTGPNASYYNTL 78

Query: 70  KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
            LFA+GTY+ YL+ + +L   E+T + +KKLQ+LTIV+L++++KCIPY +LL+ELDI +V
Sbjct: 79  NLFAYGTYRQYLENQAQLI--ELTPVMRKKLQHLTIVSLAIKTKCIPYKELLEELDIKHV 136

Query: 130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
           RDLED+IIEAIY DIIHGKLDQ+   LE+D+AIGRDI  G+V+ + +  + W DSC  +L
Sbjct: 137 RDLEDMIIEAIYGDIIHGKLDQKKQQLEVDYAIGRDIRTGNVSELASFLEEWCDSCETIL 196

Query: 190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
             +E QI +ANSEK + L H  AID EI N+KK +K Q     D+D+ M +D+
Sbjct: 197 ACLENQIHRANSEKQKRLKHKEAIDTEITNLKKLIKVQA--GNDSDEAMATDS 247

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477877|gb|EFX88835.1| hypothetical protein DAPPUDRAFT_206599 [Daphnia pulex]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/222 (58%), Positives = 168/222 (75%), Gaps = 2/222 (0%)

Query: 12  NPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKL 71
           NPLEQFVLLAK+ KGAAAVEL+KQ LEAPG+++F EL+DMP I EL T     YY+LLKL
Sbjct: 19  NPLEQFVLLAKSAKGAAAVELVKQALEAPGVYVFGELLDMPNITELQTDQFQPYYNLLKL 78

Query: 72  FAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRD 131
           FA GTY+ YL+      LPE+T  Q++KL++LTIVTLS  +KCIPY+ L+++LD+ N+R+
Sbjct: 79  FAFGTYRQYLENSS--SLPELTPFQQQKLRHLTIVTLSETNKCIPYEVLVQQLDMKNLRE 136

Query: 132 LEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKA 191
           LEDL+IEAIY D+IHGKLDQRN  LE+DFAIGRD    D+  +I     W ++C  +L A
Sbjct: 137 LEDLVIEAIYGDVIHGKLDQRNGRLEVDFAIGRDAQVKDIGRIIQTLNDWCEACDAILGA 196

Query: 192 IETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQD 233
           +ETQ+  AN EK +H+ H  AI+ E+LNIKK+LK+Q  +S D
Sbjct: 197 VETQVMNANCEKEKHIKHRAAIEEEVLNIKKTLKSQIQESDD 238

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497549|ref|XP_001600374.2| PREDICTED: COP9 signalosome complex subunit 7-like [Nasonia vitripennis]

 Score =  270 bits (689), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 133/233 (57%), Positives = 173/233 (74%), Gaps = 4/233 (1%)

Query: 9   VGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHL 68
             TNPLEQFVLLAKT KGAAA+ELIKQ +E PG+ +F EL+DMP IKEL+ SPHA Y++ 
Sbjct: 18  AATNPLEQFVLLAKTAKGAAALELIKQAVETPGVHVFGELLDMPNIKELENSPHAEYWNT 77

Query: 69  LKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISN 128
           L LFA+GTY++YL  K +L   ++T +QKKKLQ+LTIVTL+ +S+CIPY  LL+ELDI N
Sbjct: 78  LNLFAYGTYKEYLANKSQLL--DLTPVQKKKLQHLTIVTLATKSRCIPYSILLEELDIKN 135

Query: 129 VRDLEDLIIEAIYSDIIHGKLDQRNSSLELDF-AIGRDINPGDVTNMITEFQAWSDSCAN 187
           VRDLEDLIIEAIY+DIIHGKLDQ+NS LE+D+  +GRD+ PGD   +      W  +C++
Sbjct: 136 VRDLEDLIIEAIYADIIHGKLDQKNSQLEVDYTGLGRDVRPGDAGAVAETLAEWGQACSD 195

Query: 188 VLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMMG 239
           +L  IE Q+ KANSEK + + H + I  +I  +KK++ +Q   S QD D   G
Sbjct: 196 ILNCIEQQVNKANSEKTRAIQHKDKIQKDIAFVKKTIASQPGSSLQDADMAPG 248

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039407|ref|XP_001847526.1| cop9 complex subunit 7a [Culex quinquefasciatus] gi|167863003|gb|EDS26386.1| cop9 complex subunit 7a [Culex quinquefasciatus]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/231 (55%), Positives = 177/231 (76%), Gaps = 4/231 (1%)

Query: 12  NPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKL 71
           NP+EQ+VLL+K+ KG A +ELIKQVLEAPG+ +F EL+ MP I EL + P+AGYY+ L L
Sbjct: 23  NPIEQYVLLSKSAKGLACLELIKQVLEAPGVHVFGELLAMPNIAELQSGPNAGYYNTLNL 82

Query: 72  FAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRD 131
           FA+GTY+ YL+ + +L +P +T + +KKLQ+LTIV+L++++KCIPY +LL E+DI NVRD
Sbjct: 83  FAYGTYRQYLENQAQL-IP-LTPVMRKKLQHLTIVSLAIKTKCIPYKELLHEMDIKNVRD 140

Query: 132 LEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKA 191
           LEDLIIEAIY+DIIHGKLDQ+N  LE+D+AIGRDI  G+V+ ++   Q W DSC  +L  
Sbjct: 141 LEDLIIEAIYADIIHGKLDQKNKQLEVDYAIGRDIRKGNVSEIVETLQEWCDSCETILAC 200

Query: 192 IETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
           +E QI +AN+EK + L H + I+ EI N+KK +K Q     D+D+ M +D+
Sbjct: 201 LENQIHRANTEKQKRLKHKDCIETEIANLKKLIKVQA--GNDSDEAMATDS 249

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170068114|ref|XP_001868740.1| COP9 signalosome complex subunit 7 [Culex quinquefasciatus] gi|167864216|gb|EDS27599.1| COP9 signalosome complex subunit 7 [Culex quinquefasciatus]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/231 (55%), Positives = 176/231 (76%), Gaps = 4/231 (1%)

Query: 12  NPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKL 71
           NP+EQ+VLL+K+ KG A +ELIKQVLEAPG+ +F EL+ MP I EL + P+AGYY+ L L
Sbjct: 23  NPIEQYVLLSKSAKGLACLELIKQVLEAPGVHVFGELLAMPNIAELQSGPNAGYYNTLNL 82

Query: 72  FAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRD 131
           FA+GTY+ YL+ + +L +P +T + +KKLQ+LTIV+L++++KCIPY +LL E+DI NVRD
Sbjct: 83  FAYGTYRQYLENQAQL-IP-LTPVMRKKLQHLTIVSLAIKTKCIPYKELLHEMDIKNVRD 140

Query: 132 LEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKA 191
           LEDLIIEAIY+DIIHGKLDQ+N  LE+D+AIGRDI  G+V+ ++   Q W DSC  +L  
Sbjct: 141 LEDLIIEAIYADIIHGKLDQKNKQLEVDYAIGRDIRKGNVSEIVETLQEWCDSCETILAC 200

Query: 192 IETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
           +E QI +AN+EK + L H   I+ EI N+KK +K Q     D+D+ M +D+
Sbjct: 201 LENQIHRANTEKQKRLKHKECIETEIANLKKLIKVQA--GNDSDEAMATDS 249

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
UNIPROTKB|E1C3R1	267	COPS7B "Uncharacterized protei	0.850	0.850	0.506	9.6e-57
UNIPROTKB|Q2KI56	264	COPS7B "COP9 signalosome compl	0.846	0.856	0.493	2.3e-55
UNIPROTKB|E2R501	264	COPS7B "Uncharacterized protei	0.846	0.856	0.493	2.3e-55
UNIPROTKB|Q9H9Q2	264	COPS7B "COP9 signalosome compl	0.846	0.856	0.493	2.9e-55
RGD|1306918	322	Cops7b "COP9 signalosome subun	0.846	0.701	0.493	3.7e-55
MGI|MGI:1349388	264	Cops7b "COP9 (constitutive pho	0.846	0.856	0.493	4.8e-55
UNIPROTKB|F1NGK0	275	COPS7A "Uncharacterized protei	0.835	0.810	0.489	1.1e-53
UNIPROTKB|E2RED3	275	COPS7A "Uncharacterized protei	0.808	0.785	0.497	3.5e-52
UNIPROTKB|Q9UBW8	275	COPS7A "COP9 signalosome compl	0.808	0.785	0.497	3.5e-52
MGI|MGI:1349400	275	Cops7a "COP9 (constitutive pho	0.808	0.785	0.497	5.6e-52

UNIPROTKB|E1C3R1 COPS7B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 116/229 (50%), Positives = 157/229 (68%)

Query:    12 NPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKL 71
             N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y+ LL L
Sbjct:    10 NLLEQFILLAKGTSGSALTALINQVLEAPGVYVFGELLELTNVQELAEGSNAAYFQLLNL 69

Query:    72 FAHGTYQDYLK-QKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
             FA+GTY DY+     +  LPE+T  QK KL++LTIV+L+   KCIPY  LLK+LD+ N+R
Sbjct:    70 FAYGTYPDYVALTANKDNLPELTATQKNKLKHLTIVSLASRMKCIPYSVLLKDLDMRNLR 129

Query:   131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
             +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D++N++   Q W D C  VL 
Sbjct:   130 ELEDLIIEAVYTDIIQGKLDQRNQMLEVDFCIGRDIQKKDISNIVKTLQEWCDGCEAVLL 189

Query:   191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMM 238
              IE Q+ +AN  K  H      ++ME+ NIKK+LK   + S Q+ +  +
Sbjct:   190 GIEQQVLRANQYKENHHRTQQQVEMEVTNIKKTLKATASSSAQEMEQQL 238

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

UNIPROTKB|Q2KI56 COPS7B "COP9 signalosome complex subunit 7b" [Bos taurus (taxid:9913)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 113/229 (49%), Positives = 155/229 (67%)

Query:    11 TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
             +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct:     9 SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68

Query:    71 LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
             LFA+GTY DY+  KE L  PE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct:    69 LFAYGTYPDYIANKESL--PELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126

Query:   131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
             +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct:   127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186

Query:   191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMM 238
              IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S Q+ +  +
Sbjct:   187 GIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTLKATASSSAQEMEQQL 235

GO:0005737 "cytoplasm" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

UNIPROTKB|E2R501 COPS7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 113/229 (49%), Positives = 155/229 (67%)

Query:    11 TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
             +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct:     9 SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68

Query:    71 LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
             LFA+GTY DY+  KE L  PE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct:    69 LFAYGTYPDYIANKESL--PELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126

Query:   131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
             +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct:   127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186

Query:   191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMM 238
              IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S Q+ +  +
Sbjct:   187 GIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTLKATASSSAQEMEQQL 235

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9H9Q2 COPS7B "COP9 signalosome complex subunit 7b" [Homo sapiens (taxid:9606)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 113/229 (49%), Positives = 155/229 (67%)

Query:    11 TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
             +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct:     9 SNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68

Query:    71 LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
             LFA+GTY DY+  KE L  PE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct:    69 LFAYGTYPDYIANKESL--PELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126

Query:   131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
             +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct:   127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186

Query:   191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMM 238
              IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S Q+ +  +
Sbjct:   187 GIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQL 235

GO:0008180 "signalosome" evidence=IDA

GO:0010388 "cullin deneddylation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1306918 Cops7b "COP9 signalosome subunit 7B" [Rattus norvegicus (taxid:10116)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 113/229 (49%), Positives = 155/229 (67%)

Query:    11 TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
             +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct:    67 SNLLEQFILLAKGTSGSALTTLISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 126

Query:    71 LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
             LFA+GTY DY+  KE L  PE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct:   127 LFAYGTYPDYIANKESL--PELSAAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 184

Query:   131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
             +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct:   185 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIQKKDINNIVKTLHEWCDGCEAVLL 244

Query:   191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMM 238
              IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S Q+ +  +
Sbjct:   245 GIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTLKATASSSAQEMEQQL 293

GO:0005737 "cytoplasm" evidence=ISO

GO:0008180 "signalosome" evidence=ISO

GO:0010388 "cullin deneddylation" evidence=ISO

MGI|MGI:1349388 Cops7b "COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 113/229 (49%), Positives = 155/229 (67%)

Query:    11 TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
             +N LEQF+LLAK T G+A   LI QVLEAPG+++F EL+++  ++EL    +A Y  LL 
Sbjct:     9 SNLLEQFILLAKGTSGSALTTLISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLN 68

Query:    71 LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
             LFA+GTY DY+  KE L  PE++  Q+ KL++LTIV+L+   KCIPY  LLK+L++ N+R
Sbjct:    69 LFAYGTYPDYIANKESL--PELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLR 126

Query:   131 DLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLK 190
             +LEDLIIEA+Y+DII GKLDQRN  LE+DF IGRDI   D+ N++     W D C  VL 
Sbjct:   127 ELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLL 186

Query:   191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQS-QDTDDMM 238
              IE Q+ +AN  K  H      ++ E+ NIKK+LK   + S Q+ +  +
Sbjct:   187 GIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTLKATASSSAQEMEQQL 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=ISO

GO:0010388 "cullin deneddylation" evidence=ISO

UNIPROTKB|F1NGK0 COPS7A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 112/229 (48%), Positives = 153/229 (66%)

Query:     1 MVAE-KASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDT 59
             M AE K +G      EQF+LLAK  +GAA   LI QVLEAPGI++F EL+DMP ++EL  
Sbjct:     1 MAAEGKVTGQSQ---EQFLLLAKAARGAALASLIHQVLEAPGIYVFGELLDMPAVRELAD 57

Query:    60 SPHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDK 119
             S  +  +HLL +FA GTY DYL   E   LP +T+ QK KL++L++VTL+ + KCIPY  
Sbjct:    58 SEFSPVFHLLTIFACGTYADYLA--EAANLPPLTEAQKNKLRHLSVVTLAAKIKCIPYSV 115

Query:   120 LLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQ 179
             LL++L + NVR LEDL+IEA+Y+D++ G LDQRN  LE+D++IGRDI   +++ +    Q
Sbjct:   116 LLEQLQLKNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIRREELSTITRTLQ 175

Query:   180 AWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQT 228
              W   C  VL  IE Q+ +AN  K Q LA    I+ E+ N+KK++K  T
Sbjct:   176 EWCQGCEVVLSGIEEQVSRANQHKEQQLALKQQIESEVANLKKTIKVTT 224

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

UNIPROTKB|E2RED3 COPS7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 109/219 (49%), Positives = 148/219 (67%)

Query:    10 GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
             G N  EQF+LLAK+ KGAA   LI QVLEAPG+++F EL+DMP ++EL  S  A  + LL
Sbjct:     9 GQNQ-EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLL 67

Query:    70 KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
              +FA+GTY DYL   E   LP +T+ QK KL++L++VTL+ + KCIPY  LL+ L + NV
Sbjct:    68 TVFAYGTYADYLA--EARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNV 125

Query:   130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
             R LEDL+IEA+Y+D++ G LDQRN  LE+D++IGRDI   D++ +    Q W   C  VL
Sbjct:   126 RQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAITRTLQEWCVGCEVVL 185

Query:   190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQT 228
               IE Q+ +AN  K Q L     I+ E+ N+KK++K  T
Sbjct:   186 SGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTT 224

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9UBW8 COPS7A "COP9 signalosome complex subunit 7a" [Homo sapiens (taxid:9606)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 109/219 (49%), Positives = 148/219 (67%)

Query:    10 GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
             G N  EQF+LLAK+ KGAA   LI QVLEAPG+++F EL+DMP ++EL  S  A  + LL
Sbjct:     9 GQNQ-EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLL 67

Query:    70 KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
              +FA+GTY DYL   E   LP +T+ QK KL++L++VTL+ + KCIPY  LL+ L + NV
Sbjct:    68 TVFAYGTYADYLA--EARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNV 125

Query:   130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
             R LEDL+IEA+Y+D++ G LDQRN  LE+D++IGRDI   D++ +    Q W   C  VL
Sbjct:   126 RQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVL 185

Query:   190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQT 228
               IE Q+ +AN  K Q L     I+ E+ N+KK++K  T
Sbjct:   186 SGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTT 224

GO:0008180 "signalosome" evidence=IDA

GO:0010388 "cullin deneddylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1349400 Cops7a "COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 109/219 (49%), Positives = 147/219 (67%)

Query:    10 GTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLL 69
             G N  EQF+LLAK+ KGAA   LI QVLEAPG+++F EL+DMP ++EL  S  A  + LL
Sbjct:     9 GQNQ-EQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLL 67

Query:    70 KLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNV 129
              +FA+GTY DYL   E   LP +T  QK KL++L++VTL+ + KCIPY  LL+ L + NV
Sbjct:    68 TVFAYGTYADYLA--EARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNV 125

Query:   130 RDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVL 189
             R LEDL+IEA+Y+D++ G LDQRN  LE+D++IGRDI   D++ +    Q W   C  VL
Sbjct:   126 RQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVL 185

Query:   190 KAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQT 228
               IE Q+ +AN  K Q L     I+ E+ N+KK++K  T
Sbjct:   186 SGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTT 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=ISO

GO:0010388 "cullin deneddylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BV13	CSN7B_MOUSE	No assigned EC number	0.5045	0.8239	0.8333	yes	N/A
Q00648	CSN7_EMENI	No assigned EC number	0.3009	0.7453	0.6085	yes	N/A
Q2KI56	CSN7B_BOVIN	No assigned EC number	0.5067	0.8202	0.8295	yes	N/A
Q9V4S8	CSN7_DROME	No assigned EC number	0.4759	0.8389	0.8057	yes	N/A
Q55BD5	CSN7_DICDI	No assigned EC number	0.3960	0.9438	0.9729	yes	N/A
Q9H9Q2	CSN7B_HUMAN	No assigned EC number	0.5067	0.8202	0.8295	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	267
pfam01399	100	pfam01399, PCI, PCI domain	3e-14
smart00753	88	smart00753, PAM, PCI/PINT associated module	3e-10
smart00088	88	smart00088, PINT, motif in proteasome subunits, In	3e-10

>gnl|CDD|216479 pfam01399, PCI, PCI domain

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 65  YYHLLKLFAHGTYQDYLKQKEELK-------LPEMTQLQKKKLQNLTIVTLSLESKCIPY 117
           Y  LL+ F  G   D+ +   + +       L E+ +  ++K++ L +  L+     I  
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60

Query: 118 DKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRN 153
             L K L +S V ++E ++ + I    I GK+DQ N
Sbjct: 61  SDLAKLLGLS-VDEVEKILSKLIRDGRIRGKIDQVN 95

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 96  QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155
            ++K++   ++ LS     I    L K L +S   ++E L+ +AI    I  K+DQ N  
Sbjct: 6   LQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGI 64

Query: 156 LELDFAIGRDINPGDVTNMITEFQAW 181
           +E +    R   P          +  
Sbjct: 65  VEFEEVDPRRSEPL--AQFAETLKKL 88

Length = 88

>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 96  QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155
            ++K++   ++ LS     I    L K L +S   ++E L+ +AI    I  K+DQ N  
Sbjct: 6   LQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGI 64

Query: 156 LELDFAIGRDINPGDVTNMITEFQAW 181
           +E +    R   P          +  
Sbjct: 65  VEFEEVDPRRSEPL--AQFAETLKKL 88

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG3250|consensus	258		100.0
KOG2753|consensus	378		100.0
KOG2908|consensus	380		99.98
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	99.53
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	99.49
smart00753	88	PAM PCI/PINT associated module.	99.49
KOG1464|consensus	440		98.7
KOG2581|consensus	493		97.79
KOG0686|consensus	466		96.85
KOG1498|consensus	439		96.33
KOG2758|consensus	432		95.81
COG5071	439	RPN5 26S proteasome regulatory complex component [	95.49
KOG1497|consensus	399		95.47
KOG2688|consensus	394		94.96
KOG2582|consensus	422		94.73
KOG1463|consensus	411		93.85
COG5600	413	Transcription-associated recombination protein [DN	93.66
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.74
KOG0687|consensus	393		90.58
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	90.55
PF09756	188	DDRGK: DDRGK domain; InterPro: IPR019153 This is a	89.76
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	88.54
COG3355	126	Predicted transcriptional regulator [Transcription	86.67
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	84.28
KOG2072|consensus	988		83.41
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	82.38
KOG3054|consensus	299		82.32
KOG1076|consensus	843		81.32

>KOG3250|consensus

Probab=100.00  E-value=6e-61  Score=416.27  Aligned_cols=250  Identities=45%  Similarity=0.694  Sum_probs=235.5

Q ss_pred             cCCcchHHHHHhhcccchHHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhhhc
Q psy10889          8 GVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEEL   87 (267)
Q Consensus         8 ~~~~~~le~fl~lak~~k~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~~~   87 (267)
                      ....+.++||+++||+.+|+|+..+|.+||++|+||+|+|||.+|+|.+|.++.++.+++||++||||||.||.++..  
T Consensus         5 k~~~~~~eqfvllak~~kg~al~~lIsqale~P~vf~F~ELl~l~nv~qlae~~dsa~lrlL~lFa~Gt~~Dy~aea~--   82 (258)
T KOG3250|consen    5 KKQAEIIEQFVLLAKTCKGEALEELISQALEAPGVFVFGELLILPNVVQLAEPIDSAYLRLLELFAYGTYRDYSAEAL--   82 (258)
T ss_pred             hhhHHHHHHHHHHHhccchhHHHHHHHHHhcCCCeeeHHHHHhhhhHHHHcccccHHHHHHHHHHhcCchhhhhhhhh--
Confidence            345678999999999999999999999999999999999999999999999998999999999999999999999887  


Q ss_pred             cCchhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCC
Q psy10889         88 KLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDIN  167 (267)
Q Consensus        88 ~~p~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~  167 (267)
                      .+|.|+++++.||++||++|||+..++|||+.|++.|.+.|+++||++||+|||++++.|||||.+++++|.|+++||++
T Consensus        83 rlp~Ls~~q~~kLk~ltV~slas~~k~lpy~~Ll~~l~~~nvrelEd~iieamya~IlrGkldqr~q~leV~faigRdlr  162 (258)
T KOG3250|consen   83 RLPKLSLAQLNKLKHLTVVSLASFEKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLR  162 (258)
T ss_pred             cCCCCCHHHHHhhhcceehhhhhhchhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHHhhHHhhcceEeechhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhccccCCCCCccccccCCCCc---
Q psy10889        168 PGDVTNMITEFQAWSDSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDNVV---  244 (267)
Q Consensus       168 ~~q~~~L~~~L~~W~~~~~~vl~~ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~d~~~---  244 (267)
                      +.++.+|..+|++||+.|+++|-.|++++++||.+++...+++++.|.++.|+||++|...+..-+.-++|-.+.+.   
T Consensus       163 ~k~i~nm~~TL~~w~~~cenvL~~ie~qv~~anq~~e~~~r~~qq~e~ev~~~kKtlk~~ad~d~~~~eq~l~epp~~~q  242 (258)
T KOG3250|consen  163 SKDIDNMKYTLDEWCEGCENVLFGIEAQVPRANQSKERASRMSQQDEIEVMNFKKTLKPTADTDFQLNEQMLGEPPVMDQ  242 (258)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHhhhhhhhhhHHhhhcccCCCccccccchHHHhCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999865444455566666644   


Q ss_pred             cccccc-cccCCCCCC
Q psy10889        245 DKIGKK-YKIKSNRGT  259 (267)
Q Consensus       245 ~~~~~~-~~~~~~~~~  259 (267)
                      ++|+|| +|.||++++
T Consensus       243 rqp~kk~sk~kglv~s  258 (258)
T KOG3250|consen  243 RQPGKKPSKRKGLVTS  258 (258)
T ss_pred             cCCCcCcccccCCCCC
Confidence            689999 999998853

>KOG2753|consensus

Probab=100.00  E-value=1.2e-32  Score=252.50  Aligned_cols=159  Identities=26%  Similarity=0.481  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhh----hccCchhH-HHHHHHH
Q psy10889         26 GAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKE----ELKLPEMT-QLQKKKL  100 (267)
Q Consensus        26 ~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~----~~~~p~L~-~~~~~KL  100 (267)
                      ...|.++|+.|+.+|+.|.|++|+.+|+|+.|+++.   +|+||.||..|.+++|.++..    +++.-+|. +++.+||
T Consensus       204 redA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~---i~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~E~~~~KM  280 (378)
T KOG2753|consen  204 REDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDL---IHQLLKIFVSGKLDAYVEFVAANSGFVQSQGLVHEQNMAKM  280 (378)
T ss_pred             HHHHHHHHHHHHcCCceeccchhccCchHHHhccch---HHHHHHHHHhcchHHHHHHHHhChHHHHHhcccHHHHHHHH
Confidence            356899999999999999999999999999999986   999999999999999998854    23333444 5679999


Q ss_pred             HhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHH
Q psy10889        101 QNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQA  180 (267)
Q Consensus       101 r~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~  180 (267)
                      |+||+++||+.+..|||++|+++|+|. .+|||.|||+||.+++|.|||||.+++|.|+.+.+|.|+..||..|.++|..
T Consensus       281 RLLTlm~LA~es~eisy~~l~k~LqI~-edeVE~fVIdaI~aklV~~kidq~~~~viVs~~~hR~FG~~qW~~L~~kL~a  359 (378)
T KOG2753|consen  281 RLLTLMSLAEESNEISYDTLAKELQIN-EDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSSTHRTFGKQQWQQLRDKLAA  359 (378)
T ss_pred             HHHHHHHHhccCCCCCHHHHHHHhccC-HHHHHHHHHHHHHHHHHHhhHHhhcceEEeehhhhhhcccHHHHHHHHHHHH
Confidence            999999999999999999999999997 9999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHH
Q psy10889        181 WS-DSCANV  188 (267)
Q Consensus       181 W~-~~~~~v  188 (267)
                      |. +.+.++
T Consensus       360 w~k~~~stv  368 (378)
T KOG2753|consen  360 WGKQNLSTV  368 (378)
T ss_pred             HHhhhhHHH
Confidence            95 433333

>KOG2908|consensus

Probab=99.98  E-value=1.4e-31  Score=246.63  Aligned_cols=174  Identities=18%  Similarity=0.377  Sum_probs=162.7

Q ss_pred             ccchHHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhhhc-cCchhHH---HHH
Q psy10889         22 KTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEEL-KLPEMTQ---LQK   97 (267)
Q Consensus        22 k~~k~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~~~-~~p~L~~---~~~   97 (267)
                      .+.+...|.+|..+||.+.++|||||||.||+...|.+|++.|++++|.+|+.||+..|......+ ..|.|..   ...
T Consensus       194 ~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~L~  273 (380)
T KOG2908|consen  194 ESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDFLL  273 (380)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHHHH
Confidence            456678899999999999999999999999999999999999999999999999999999987655 7788853   369


Q ss_pred             HHHHhHHhhhccc----CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHH
Q psy10889         98 KKLQNLTIVTLSL----ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTN  173 (267)
Q Consensus        98 ~KLr~LtLlsLa~----~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~  173 (267)
                      +|+++|+|+.+|-    ..|.+||++|+++++|| .++||.+||+|++.|||+|.|||++++|+++|++||.++.+|+..
T Consensus       274 qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip-~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~  352 (380)
T KOG2908|consen  274 QKIRLLALIEITFSRPANERTLSFKEIAEATKIP-NKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVK  352 (380)
T ss_pred             HHHHHHHHHHHHhcCcchhccccHHHHHHHhCCC-HHHHHHHHHHHHhccceeeeecccccEEEEecccccccCHHHHHh
Confidence            9999999999984    57999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy10889        174 MITEFQAWSDSCANVLKAIETQI  196 (267)
Q Consensus       174 L~~~L~~W~~~~~~vl~~ie~~i  196 (267)
                      |.+++..|++.+.++...|+.+.
T Consensus       353 Mk~rl~~W~~~v~~me~~ve~~~  375 (380)
T KOG2908|consen  353 MKDRLDEWNKDVKSMEGLVEHRG  375 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999988754

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=99.53  E-value=7.3e-14  Score=107.97  Aligned_cols=97  Identities=26%  Similarity=0.396  Sum_probs=83.0

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhhc-----cCchh---HHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHH
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEEL-----KLPEM---TQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLED  134 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~~-----~~p~L---~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~  134 (267)
                      +|+.+|+++|..|++..|.......     ..|.+   .+.+..+++..+|.+++...+.|++++|++.|+++ ..+||.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~-~~~vE~   79 (105)
T PF01399_consen    1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLS-EEEVES   79 (105)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCC-HHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccc-hHHHHH
Confidence            3789999999999999998764311     22333   46789999999999999999999999999999999 899999


Q ss_pred             HHHHHHhcCccEEEecCCCCeEEEEe
Q psy10889        135 LIIEAIYSDIIHGKLDQRNSSLELDF  160 (267)
Q Consensus       135 lvI~aI~~gLI~GkIDQ~~~~v~V~~  160 (267)
                      +|+++|..|.|.|+|||.+++|+++|
T Consensus        80 ~l~~~I~~~~i~~~ID~~~~~v~~~k  105 (105)
T PF01399_consen   80 ILIDLISNGLIKAKIDQVNGVVVFSK  105 (105)
T ss_dssp             HHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEecC
Confidence            99999999999999999999999875

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=99.49  E-value=6.8e-14  Score=106.35  Aligned_cols=86  Identities=23%  Similarity=0.303  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHH
Q psy10889         93 TQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVT  172 (267)
Q Consensus        93 ~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~  172 (267)
                      .+.+.+|++.++|+.++..+++|+|++|++.++++ .+++|.+|+++|..|.|.|+|||.+++|.+.+..+|.  .++|.
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~~~~~   79 (88)
T smart00088        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--SEPLA   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--hhHHH
Confidence            45678999999999999999999999999999999 7899999999999999999999999999999999996  78899


Q ss_pred             HHHHHHHHH
Q psy10889        173 NMITEFQAW  181 (267)
Q Consensus       173 ~L~~~L~~W  181 (267)
                      .+.++|..|
T Consensus        80 ~~~~~l~~~   88 (88)
T smart00088       80 QFAETLKKL   88 (88)
T ss_pred             HHHHHhhcC
Confidence            999998887

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=99.49  E-value=6.8e-14  Score=106.35  Aligned_cols=86  Identities=23%  Similarity=0.303  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHH
Q psy10889         93 TQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVT  172 (267)
Q Consensus        93 ~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~  172 (267)
                      .+.+.+|++.++|+.++..+++|+|++|++.++++ .+++|.+|+++|..|.|.|+|||.+++|.+.+..+|.  .++|.
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~~~~~   79 (88)
T smart00753        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--SEPLA   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--hhHHH
Confidence            45678999999999999999999999999999999 7899999999999999999999999999999999996  78899


Q ss_pred             HHHHHHHHH
Q psy10889        173 NMITEFQAW  181 (267)
Q Consensus       173 ~L~~~L~~W  181 (267)
                      .+.++|..|
T Consensus        80 ~~~~~l~~~   88 (88)
T smart00753       80 QFAETLKKL   88 (88)
T ss_pred             HHHHHhhcC
Confidence            999998887

>KOG1464|consensus

Probab=98.70  E-value=1e-07  Score=87.63  Aligned_cols=126  Identities=17%  Similarity=0.334  Sum_probs=106.3

Q ss_pred             hHHHHHHHHhcCCHhHHHhhh----hhc-cCchhH---HHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHH
Q psy10889         64 GYYHLLKLFAHGTYQDYLKQK----EEL-KLPEMT---QLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDL  135 (267)
Q Consensus        64 ~~~~LL~lFa~Gt~~dy~~~~----~~~-~~p~L~---~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~l  135 (267)
                      .+.+|+..+...++.+|+...    +.+ ..|.+.   ++.++++|.-.|+.|......|....|+++|.|+ +.+||.|
T Consensus       306 AMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~-~~dV~~L  384 (440)
T KOG1464|consen  306 AMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVP-EADVESL  384 (440)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCC-HHHHHHH
Confidence            478899999999999998753    234 557764   5679999999999999999999999999999999 9999999


Q ss_pred             HHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10889        136 IIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQI  196 (267)
Q Consensus       136 vI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~~vl~~ie~~i  196 (267)
                      ++.||-.+-|+|+|||+++.+.......      .-..+...|..|.++++++.+.|-.++
T Consensus       385 LV~~ILD~~i~g~Ide~n~~l~~~~~~~------s~~k~~~al~kW~~ql~Sl~~~i~sr~  439 (440)
T KOG1464|consen  385 LVSCILDDTIDGRIDEVNQYLELDKSKN------SGSKLYKALDKWNNQLKSLQSNIVSRV  439 (440)
T ss_pred             HHHHHhccccccchHHhhhHhccCccCC------cchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998764321      122388999999999999988876543

>KOG2581|consensus

Probab=97.79  E-value=0.00053  Score=66.04  Aligned_cols=95  Identities=20%  Similarity=0.341  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhhccCchhH----HHHHHHHHhHHh----hhcccCCcccCHHHHHHHhCCCChhhHHH
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEELKLPEMT----QLQKKKLQNLTI----VTLSLESKCIPYDKLLKELDISNVRDLED  134 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~~~~p~L~----~~~~~KLr~LtL----lsLa~~~k~IsY~~I~~~L~I~~~~evE~  134 (267)
                      .+|+.|-+..--||++-|.....+.. +.|-    -..+-.||+=.|    -.+.-.++.|||.+|+..|+|+|..++|.
T Consensus       319 ~~Yf~Lt~AVr~gdlkkF~~~leq~k-~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~Ey  397 (493)
T KOG2581|consen  319 RPYFKLTQAVRLGDLKKFNETLEQFK-DKFQADGTYTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEY  397 (493)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH-HHHhhCCcchHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHH
Confidence            46999999999999999988755210 1111    112333333222    12222478999999999999999899999


Q ss_pred             HHHHHHhcCccEEEecCCCCeEEE
Q psy10889        135 LIIEAIYSDIIHGKLDQRNSSLEL  158 (267)
Q Consensus       135 lvI~aI~~gLI~GkIDQ~~~~v~V  158 (267)
                      +|-+||..|+|+|+||..++.+.-
T Consensus       398 iVakAIRDGvIea~Id~~~g~m~s  421 (493)
T KOG2581|consen  398 IVAKAIRDGVIEAKIDHEDGFMQS  421 (493)
T ss_pred             HHHHHHHhccceeeeccccCceeh
Confidence            999999999999999999995543

>KOG0686|consensus

Probab=96.85  E-value=0.012  Score=56.90  Aligned_cols=110  Identities=20%  Similarity=0.204  Sum_probs=83.9

Q ss_pred             hHHHHHHHHhcCCHhHHHhhhhhc--cC---chhHH---HHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHH
Q psy10889         64 GYYHLLKLFAHGTYQDYLKQKEEL--KL---PEMTQ---LQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDL  135 (267)
Q Consensus        64 ~~~~LL~lFa~Gt~~dy~~~~~~~--~~---p~L~~---~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~l  135 (267)
                      .+.++|.-|..+-|..-...-..+  .+   +-|.|   ....++|.=+++..-.....++++.+|.+.+.+ +..+|.=
T Consensus       307 qlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~s-v~~le~~  385 (466)
T KOG0686|consen  307 QLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTS-VAILESE  385 (466)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhccc-HHHHHHH
Confidence            366677777777766544432211  11   33444   468889999999999999999999999999998 9999999


Q ss_pred             HHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHH
Q psy10889        136 IIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNM  174 (267)
Q Consensus       136 vI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L  174 (267)
                      |.+.|-.|.|.||||+.++++.+.-+..|.-+-+....|
T Consensus       386 l~~LI~~~~i~~rIDs~~ki~~~~~~~~en~~fe~~~~~  424 (466)
T KOG0686|consen  386 LLELILEGKISGRIDSHNKILYARDADSENATFERVLPM  424 (466)
T ss_pred             HHHHHHccchheeeccccceeeecccccccchhhhcchh
Confidence            999999999999999999999998776664433333333

>KOG1498|consensus

Probab=96.33  E-value=0.024  Score=54.57  Aligned_cols=82  Identities=15%  Similarity=0.283  Sum_probs=71.1

Q ss_pred             ccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy10889        109 SLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANV  188 (267)
Q Consensus       109 a~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~~v  188 (267)
                      |.-+.+||+..+++-|+++ .++.|.+|=+.+..|.|.+|||+..+.+.+.-+          ..+.+-|.+|..+++++
T Consensus       348 A~yYSrIt~~rl~eLLdl~-~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~----------K~~~~~LneW~~nve~L  416 (439)
T KOG1498|consen  348 AKYYSRITLKRLAELLDLP-VEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKV----------KDSNEILNEWASNVEKL  416 (439)
T ss_pred             HHHHhhccHHHHHHHhCCC-HHHHHHHHHHHHhccceEEEecCCCceEEEEec----------ccHHHHHHHHHhhHHHH
Confidence            3447899999999999999 999999999999999999999999999988633          44788899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy10889        189 LKAIETQIGKANS  201 (267)
Q Consensus       189 l~~ie~~i~~a~~  201 (267)
                      +..++.--.-..+
T Consensus       417 ~~ll~K~~HLI~K  429 (439)
T KOG1498|consen  417 LGLLEKVSHLIHK  429 (439)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988875555544

>KOG2758|consensus

Probab=95.81  E-value=0.028  Score=53.17  Aligned_cols=95  Identities=18%  Similarity=0.265  Sum_probs=76.2

Q ss_pred             HHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHH
Q psy10889         96 QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMI  175 (267)
Q Consensus        96 ~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~  175 (267)
                      -+.-.|+|-.-+.|.-+.+|+.+.||+.|+++ ..|.|.|++..|....|++|||..-+.|.+.....     .--++++
T Consensus       331 F~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~-~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~-----s~~qQ~i  404 (432)
T KOG2758|consen  331 FLENARLLIFETFCRIHQCITIDMLADKLNMD-PEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTV-----SPHQQLI  404 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHheeHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhhhhccccCceeecCCCC-----CHHHHHH
Confidence            36777888888888889999999999999998 99999999999999999999999999988764322     1344566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy10889        176 TEFQAWSDSCANVLKAIETQI  196 (267)
Q Consensus       176 ~~L~~W~~~~~~vl~~ie~~i  196 (267)
                      ++-..-.-+..++-..++..+
T Consensus       405 e~tksLS~rsq~la~~lek~~  425 (432)
T KOG2758|consen  405 EKTKSLSFRSQNLAQQLEKKI  425 (432)
T ss_pred             HhccccchhHHHHHHHHHHHH
Confidence            666666666666666666554

>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.09  Score=49.53  Aligned_cols=74  Identities=16%  Similarity=0.287  Sum_probs=64.4

Q ss_pred             CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy10889        112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKA  191 (267)
Q Consensus       112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~~vl~~  191 (267)
                      +..|+-..|..-|+.+ ..+.|.+|-+.+..|.+.+||+|..+.+.+.-.          .+..+.|..|.++++.++..
T Consensus       351 YSrI~~~rl~~lld~~-~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~----------~n~~~~lneW~~NV~ellgk  419 (439)
T COG5071         351 YSRIHCSRLGVLLDMS-PSETEQFISDLVNKGHFYAKINRPAQIISFEKS----------QNVQEQLNEWGSNVTELLGK  419 (439)
T ss_pred             hhhhhHHHHHHHHcCC-HHHHHHHHHHHHhcCcEEEEecCccceEEeecc----------ccHHHHHHHhcccHHHHHHH
Confidence            5778999999999998 999999999999999999999999999988633          23567889999999999988


Q ss_pred             HHHHH
Q psy10889        192 IETQI  196 (267)
Q Consensus       192 ie~~i  196 (267)
                      ++.--
T Consensus       420 lek~~  424 (439)
T COG5071         420 LEKVR  424 (439)
T ss_pred             HHHHh
Confidence            87643

>KOG1497|consensus

Probab=95.47  E-value=0.028  Score=53.05  Aligned_cols=82  Identities=16%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q psy10889        105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDS  184 (267)
Q Consensus       105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~  184 (267)
                      |+++..-...|+|++|...|+|+ ...+|.++=++|..+=++|.|||.++.+++.-.-+    -.+|+.   .+..-|..
T Consensus       308 lls~Skly~nisf~~Lg~ll~i~-~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~----l~~wdk---qi~sl~~q  379 (399)
T KOG1497|consen  308 LLSASKLYNNISFEELGALLKID-AEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREE----LPQWDK---QIQSLCNQ  379 (399)
T ss_pred             HHHHHHHHHhccHHHHHHHhCCC-HHHHHHHHHHHHhHHHhccchHhhcceEeecchhh----hhhhhH---HHHHHHHH
Confidence            34444446789999999999999 99999999999999999999999999999863211    124443   33344555


Q ss_pred             HHHHHHHHHH
Q psy10889        185 CANVLKAIET  194 (267)
Q Consensus       185 ~~~vl~~ie~  194 (267)
                      +++++..|..
T Consensus       380 vNki~~~i~~  389 (399)
T KOG1497|consen  380 VNKILDKISH  389 (399)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>KOG2688|consensus

Probab=94.96  E-value=0.12  Score=49.98  Aligned_cols=98  Identities=16%  Similarity=0.216  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhhccCchhHH----HHHHHHHhHHhhhcc-------cCCcccCHHHHHHHhCCCC---
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQ----LQKKKLQNLTIVTLS-------LESKCIPYDKLLKELDISN---  128 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~~~~p~L~~----~~~~KLr~LtLlsLa-------~~~k~IsY~~I~~~L~I~~---  128 (267)
                      ..+-.|+.....|++..|....+. +.--+..    -.+.|+++++.=.|.       .+...+|++.+..+|....   
T Consensus       272 ~~~~~lv~aVr~Gnl~~f~~al~~-~E~~f~~~gi~l~l~~l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~  350 (394)
T KOG2688|consen  272 DKYSPLVQAVRSGNLRLFDLALAD-NERFFIRSGIYLTLEKLPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTD  350 (394)
T ss_pred             HhHHHHHHHHHhccHHHHHHHHhh-hHHHHHHhccHHHhhhhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCC
Confidence            356778999999999999875331 0000100    124446666544433       2568899999999998765   


Q ss_pred             --hhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889        129 --VRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA  161 (267)
Q Consensus       129 --~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~  161 (267)
                        .+|||-.+..+|+.|.|+|.|+...+++.+...
T Consensus       351 ~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~  385 (394)
T KOG2688|consen  351 VDLDEVECILANLIDLGRIKGYISHQLQTLVFSKK  385 (394)
T ss_pred             CchhhHHHHHHhhhhhccccchhchhhheEEEecC
Confidence              689999999999999999999999999999754

>KOG2582|consensus

Probab=94.73  E-value=0.35  Score=46.46  Aligned_cols=108  Identities=10%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhh----hc---cCchhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHH
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKE----EL---KLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDL  135 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~----~~---~~p~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~l  135 (267)
                      .+|.++++++..+.-.+.+....    .+   +.-+|....+.-+.+=+|..|....-+|+.++|++..++.+..|||..
T Consensus       259 ~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~  338 (422)
T KOG2582|consen  259 NPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKY  338 (422)
T ss_pred             chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHH
Confidence            36999999999988776655321    11   334455444555555566666666778999999997777778999999


Q ss_pred             HHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHH
Q psy10889        136 IIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTN  173 (267)
Q Consensus       136 vI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~  173 (267)
                      |+..|..|=|-+.||   +-|..+.-...+..|+...+
T Consensus       339 Ilqmie~~~i~a~iN---G~v~f~~n~e~~~SpeM~~n  373 (422)
T KOG2582|consen  339 ILQMIEDGEIFASIN---GMVFFTDNPEKYNSPEMHEN  373 (422)
T ss_pred             HHHHhccCceEEEec---ceEEEecCcccCCCHHHHhh
Confidence            999999999999999   88888777777777766554

>KOG1463|consensus

Probab=93.85  E-value=0.33  Score=46.31  Aligned_cols=106  Identities=14%  Similarity=0.149  Sum_probs=76.2

Q ss_pred             hcCCCchhHHHHHHHHhcCCHhHHHhhhh----hc-cCchhHHH---HHHHHHhHHhhhcccCCcccCHHHHHHHhCCCC
Q psy10889         57 LDTSPHAGYYHLLKLFAHGTYQDYLKQKE----EL-KLPEMTQL---QKKKLQNLTIVTLSLESKCIPYDKLLKELDISN  128 (267)
Q Consensus        57 L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~----~~-~~p~L~~~---~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~  128 (267)
                      ..+..-..+...-+.|..-+++||...-.    ++ ..|....+   .-.-|----|+.+.++..++..+-|++-+|++ 
T Consensus       280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~-  358 (411)
T KOG1463|consen  280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLD-  358 (411)
T ss_pred             ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCC-
Confidence            33433455777778888889999986432    11 22222111   11111112367777889999999999999998 


Q ss_pred             hhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecC
Q psy10889        129 VRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIG  163 (267)
Q Consensus       129 ~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~  163 (267)
                      +..||.=+-.+|-...+.|.|||-++|+.|.--.+
T Consensus       359 ~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~~  393 (411)
T KOG1463|consen  359 VPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEPP  393 (411)
T ss_pred             cHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCCC
Confidence            99999999999999999999999999999974433

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]

Probab=93.66  E-value=0.33  Score=46.75  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhh----ccCchhHHHHHHHHHhH-------HhhhcccCCcccCHHHHHHHhCCCC---
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEE----LKLPEMTQLQKKKLQNL-------TIVTLSLESKCIPYDKLLKELDISN---  128 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~----~~~p~L~~~~~~KLr~L-------tLlsLa~~~k~IsY~~I~~~L~I~~---  128 (267)
                      +.+--|..+.-+|++++|....+.    +---+|-=.+..+...+       .+..++-....+||+.+...++++.   
T Consensus       289 s~~~~LvkavrsGni~~~~~~l~~ner~~~~~~l~ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn  368 (413)
T COG5600         289 SVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDN  368 (413)
T ss_pred             chhHHHHHHHHcCCHHHHHHHHHHhHHHHHHcchHHHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCc
Confidence            445668899999999999875321    00000100111222222       2334444455577777666666543   


Q ss_pred             ---hhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecC
Q psy10889        129 ---VRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIG  163 (267)
Q Consensus       129 ---~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~  163 (267)
                         ..+||-++..+|..|+++|.|....++++++...|
T Consensus       369 ~~~~~~VEciL~tlI~~G~lrgYis~s~~~vV~sk~~p  406 (413)
T COG5600         369 FHSFKEVECILVTLIGLGLLRGYISHSRRTVVFSKKDP  406 (413)
T ss_pred             ccChHHHHHHHHHHHhhhhhhheecccceEEEEecCCC
Confidence               46899999999999999999999999999986543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=1.3  Score=41.79  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhh----hc-cCchhHHH---HHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHH
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKE----EL-KLPEMTQL---QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLED  134 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~----~~-~~p~L~~~---~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~  134 (267)
                      ..+...-+.|...++.||...-.    ++ +.|.+..+   .-.-|----|+.+.+...++..+-|++-+|++ ...||.
T Consensus       284 ~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGld-t~qvEg  362 (421)
T COG5159         284 RAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLD-TNQVEG  362 (421)
T ss_pred             HHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhccc-HHHHHH
Confidence            44666777788888999986532    11 12222111   11111122366777888899999999999998 999999


Q ss_pred             HHHHHHhcCccEEEecCCCCeEEEEeecCCC
Q psy10889        135 LIIEAIYSDIIHGKLDQRNSSLELDFAIGRD  165 (267)
Q Consensus       135 lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd  165 (267)
                      =+-..|-..++-|.+||.++|+.|.--...|
T Consensus       363 KLsqMILDKifyG~LDqg~gcLivy~ep~qd  393 (421)
T COG5159         363 KLSQMILDKIFYGTLDQGDGCLIVYGEPAQD  393 (421)
T ss_pred             HHHHHHHHHHHHhhhccCCceEEEeCCcccc
Confidence            9999999999999999999999998654443

>KOG0687|consensus

Probab=90.58  E-value=2.7  Score=40.11  Aligned_cols=112  Identities=17%  Similarity=0.235  Sum_probs=78.2

Q ss_pred             hhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhh-----hhccC-chhHHH---HHHHHHhHHhhhcccCCcccCHH
Q psy10889         48 LIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQK-----EELKL-PEMTQL---QKKKLQNLTIVTLSLESKCIPYD  118 (267)
Q Consensus        48 LL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~-----~~~~~-p~L~~~---~~~KLr~LtLlsLa~~~k~IsY~  118 (267)
                      ++.-|-|++.-.+ -+..-+++.-+-.-+|.+|-..-     ..+.. --|.|.   -.+-||+..-..+-+..|.++.+
T Consensus       243 Vi~~~Evl~vl~~-l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~  321 (393)
T KOG0687|consen  243 VIKCPEVLEVLHK-LPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLE  321 (393)
T ss_pred             hcCcHHHHHHhhc-CchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444443332 22355555555555666654321     11111 123443   36778888888888899999999


Q ss_pred             HHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889        119 KLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA  161 (267)
Q Consensus       119 ~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~  161 (267)
                      ..|+..||+ ++-++.=+=+-|-+|-++++||-++++|++++-
T Consensus       322 ~MA~aFgVS-VefiDreL~rFI~~grL~ckIDrVnGVVEtNrp  363 (393)
T KOG0687|consen  322 SMAKAFGVS-VEFIDRELGRFIAAGRLHCKIDRVNGVVETNRP  363 (393)
T ss_pred             HHHHHhCch-HHHHHhHHHHhhccCceeeeeecccceeecCCc
Confidence            999999998 988888888899999999999999999999854

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=90.55  E-value=1.8  Score=35.49  Aligned_cols=110  Identities=14%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhCCCeeechhhhcChhhhhhcC-CCchhHHHHHHHHhcCCHhHHHhhhhhc-cCchhH---HHHHHHHHhH
Q psy10889         29 AVELIKQVLEAPGIFMFKELIDMPLIKELDT-SPHAGYYHLLKLFAHGTYQDYLKQKEEL-KLPEMT---QLQKKKLQNL  103 (267)
Q Consensus        29 a~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~-s~~~~~~~LL~lFa~Gt~~dy~~~~~~~-~~p~L~---~~~~~KLr~L  103 (267)
                      ...++..+|..-.+-+|.-++..-.-...+. .+-..++.|.+.+-.|+|..|......- -.|.+.   +.....+|.=
T Consensus         7 ~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR~~   86 (143)
T PF10075_consen    7 YALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIRER   86 (143)
T ss_dssp             HHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            3444555555555677887776533333332 3456788899999999999998743310 012332   2346677776


Q ss_pred             HhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHH
Q psy10889        104 TIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEA  139 (267)
Q Consensus       104 tLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~a  139 (267)
                      .+-.+...+..|+-+.+++-|+++ ..+++.++.+-
T Consensus        87 i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~~~~  121 (143)
T PF10075_consen   87 IAHLISKAYSSISLSDLAEMLGLS-EEELEKFIKSR  121 (143)
T ss_dssp             HHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHHHHc
Confidence            666677779999999999999999 99999998765

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues

Probab=89.76  E-value=0.5  Score=41.40  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=43.2

Q ss_pred             HhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889        101 QNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD  159 (267)
Q Consensus       101 r~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~  159 (267)
                      -+-.++......++++.++|+.++++. ..++-+-|-+....|.|.|-||...+-|+|+
T Consensus       100 lL~~Fi~yIK~~Kvv~ledla~~f~l~-t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs  157 (188)
T PF09756_consen  100 LLQEFINYIKEHKVVNLEDLAAEFGLR-TQDVINRIQELEAEGRLTGVIDDRGKFIYIS  157 (188)
T ss_dssp             HHHHHHHHHHH-SEE-HHHHHHHH-S--HHHHHHHHHHHHHHSSS-EEE-TT--EEE--
T ss_pred             HHHHHHHHHHHcceeeHHHHHHHcCCC-HHHHHHHHHHHHHCCCceeeEcCCCCeEEec
Confidence            344577888889999999999999998 8899999999999999999999999999987

They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=88.54  E-value=0.46  Score=34.36  Aligned_cols=45  Identities=20%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             HhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEe
Q psy10889        104 TIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKL  149 (267)
Q Consensus       104 tLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkI  149 (267)
                      .|..+...++.+++++|+.+++++ ...||.+|=..+..|-|+-.-
T Consensus         4 ~i~~~l~~~~~~S~~eLa~~~~~s-~~~ve~mL~~l~~kG~I~~~~   48 (69)
T PF09012_consen    4 EIRDYLRERGRVSLAELAREFGIS-PEAVEAMLEQLIRKGYIRKVD   48 (69)
T ss_dssp             HHHHHHHHS-SEEHHHHHHHTT---HHHHHHHHHHHHCCTSCEEEE
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEec
Confidence            345555678899999999999998 999999999999999998433

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=86.67  E-value=7.3  Score=32.04  Aligned_cols=79  Identities=15%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE-Eec-CCCCeEEEEeecCCCCCCCcHHH-HHHHHHHHHHHHHH
Q psy10889        111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG-KLD-QRNSSLELDFAIGRDINPGDVTN-MITEFQAWSDSCAN  187 (267)
Q Consensus       111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G-kID-Q~~~~v~V~~~~~Rd~~~~q~~~-L~~~L~~W~~~~~~  187 (267)
                      .+..++-++|++.|+++ ...|..-|=..+..|||.= |.. ...+-.++-.+    ++++++.. |...|..|++++..
T Consensus        39 ~~~~~tvdelae~lnr~-rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~----i~~ee~k~~i~~~l~~w~~~~~~  113 (126)
T COG3355          39 ENGPLTVDELAEILNRS-RSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKP----IDPEEIKKKILKDLDEWYDKMKQ  113 (126)
T ss_pred             hcCCcCHHHHHHHHCcc-HHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEec----CCHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999998 8899999999999999863 222 12223333222    34456654 67899999999998


Q ss_pred             HHHHHHH
Q psy10889        188 VLKAIET  194 (267)
Q Consensus       188 vl~~ie~  194 (267)
                      .+...+.
T Consensus       114 ~i~~~~~  120 (126)
T COG3355         114 LIEEFEK  120 (126)
T ss_pred             HHHHHhc
Confidence            8876654

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=84.28  E-value=3.1  Score=30.96  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             HHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889        100 LQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD  159 (267)
Q Consensus       100 Lr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~  159 (267)
                      ++.|..+......+.++-.+|++.++++ ...|+.++=....+|+|+..= ..++-+...
T Consensus        11 l~~l~~la~~~~~~~~s~~eiA~~~~i~-~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~   68 (83)
T PF02082_consen   11 LRILLYLARHPDGKPVSSKEIAERLGIS-PSYLRKILQKLKKAGLIESSR-GRGGGYRLA   68 (83)
T ss_dssp             HHHHHHHHCTTTSC-BEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEET-STTSEEEES
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHCcC-HHHHHHHHHHHhhCCeeEecC-CCCCceeec
Confidence            4444444443445569999999999998 999999999999999987652 334444443

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>KOG2072|consensus

Probab=83.41  E-value=15  Score=39.00  Aligned_cols=48  Identities=21%  Similarity=0.370  Sum_probs=43.6

Q ss_pred             CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889        112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD  159 (267)
Q Consensus       112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~  159 (267)
                      +..|+|+.|.+-.-+=|.-+||.+|++|...+.+..+||....+|.+.
T Consensus       445 Y~sIs~~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fg  492 (988)
T KOG2072|consen  445 YESISFERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHESNSVSFG  492 (988)
T ss_pred             HHHHhHHHHHHHHhhcCHHHHHHHHHHHHhccceeEEeccccceeeec
Confidence            678999998887766668999999999999999999999999999986

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=82.38  E-value=2.3  Score=32.75  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889        110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG  147 (267)
Q Consensus       110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G  147 (267)
                      ..+..+||.+|++.++++ ...+-..+-.....|+|.+
T Consensus        13 ~~~~~~~~~~la~~l~~s-~~tv~~~l~~L~~~g~i~~   49 (108)
T smart00344       13 QKDARISLAELAKKVGLS-PSTVHNRVKRLEEEGVIKG   49 (108)
T ss_pred             HHhCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeec
Confidence            345679999999999998 9999999999999999983

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>KOG3054|consensus

Probab=82.32  E-value=2.3  Score=38.88  Aligned_cols=54  Identities=20%  Similarity=0.384  Sum_probs=46.4

Q ss_pred             hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889        105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD  159 (267)
Q Consensus       105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~  159 (267)
                      ++....++++++.++|+.+.++. ..+.=+-+=+.+..|+|.|-||...+-++|+
T Consensus       205 Fv~YIk~nKvV~ledLas~f~Lr-tqd~inriq~~l~eg~ltGVmDDRGKfIYIS  258 (299)
T KOG3054|consen  205 FVEYIKKNKVVPLEDLASEFGLR-TQDSINRIQELLAEGLLTGVMDDRGKFIYIS  258 (299)
T ss_pred             HHHHHHhcCeeeHHHHHHHhCcc-HHHHHHHHHHHHHhhhheeeecCCCceEEec
Confidence            66777889999999999999998 4555556667778999999999999999997

>KOG1076|consensus

Probab=81.32  E-value=9.7  Score=39.71  Aligned_cols=98  Identities=16%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCHhHHHhhh----hhcc-CchhHH---HHHHHHHhHH----hhhcccCCcccCHHHHHHHhCCCChhhH
Q psy10889         65 YYHLLKLFAHGTYQDYLKQK----EELK-LPEMTQ---LQKKKLQNLT----IVTLSLESKCIPYDKLLKELDISNVRDL  132 (267)
Q Consensus        65 ~~~LL~lFa~Gt~~dy~~~~----~~~~-~p~L~~---~~~~KLr~Lt----LlsLa~~~k~IsY~~I~~~L~I~~~~ev  132 (267)
                      +..-=.++..|+|.+-..+.    .-|. +|.-..   -...+++-=+    |++.++-+..+|.+.||+-.++| +..|
T Consensus       657 VvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp-~~~V  735 (843)
T KOG1076|consen  657 VVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLP-EPKV  735 (843)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCC-chhH
Confidence            45566788899998766532    1122 243221   1244444433    55566668899999999999999 9999


Q ss_pred             HHHHHHHHhcCccEEEecCCCCeEEEEeecC
Q psy10889        133 EDLIIEAIYSDIIHGKLDQRNSSLELDFAIG  163 (267)
Q Consensus       133 E~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~  163 (267)
                      -.+|=+.|-..=|.+.+||..+||.++.+.+
T Consensus       736 hsIiSkmiineEl~AslDqpt~~iv~hrvE~  766 (843)
T KOG1076|consen  736 HSIISKMIINEELHASLDQPTQCIVMHRVEP  766 (843)
T ss_pred             HHHHHHHHHHHHhhhccCCCcceEEEeeccc
Confidence            9999899999999999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
3chm_A	169	Crystal Structure Of Pci Domain From A. Thaliana Co		8e-31

>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9 Signalosome Subunit 7 (Csn7) Length = 169

Iteration: 1
 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 14  LEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFA 73
           ++Q V  A T K  A   LI +    P +F F E++ +P + +L+ +  + Y  LL+LFA
Sbjct: 11  IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 74  HGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLE 133
           HGT+ DY  +    +LP ++  Q  KL+ LT++TL+  +K +PYD L+ ELD+SNVR+LE
Sbjct: 71  HGTWGDY--KCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELE 128
Query: 134 DLII-EAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTN 173
           D +I E +Y+ I+ GKLDQ     E+ FA GRD+ PG + N
Sbjct: 129 DFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	7e-51
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169

 Score =  163 bits (414), Expect = 7e-51
 Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 3/164 (1%)

Query: 11  TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
              ++Q V  A T K  A   LI +    P +F F E++ +P + +L+ +  + Y  LL+
Sbjct: 8   AEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLR 67

Query: 71  LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
           LFAHGT+ DY       +LP ++  Q  KL+ LT++TL+  +K +PYD L+ ELD+SNVR
Sbjct: 68  LFAHGTWGDYKCNAT--RLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVR 125

Query: 131 DLEDLII-EAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTN 173
           +LED +I E +Y+ I+ GKLDQ     E+ FA GRD+ PG + N
Sbjct: 126 ELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 82/279 (29%)

Query: 9   VGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHL 68
           + TNP    ++      G A  +  K V           +I+  L   L+ + +   +  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSL-NVLEPAEYRKMFDR 377

Query: 69  LKLFAHGTYQDYLKQKEELKLPE------------------MTQLQKKKLQN-------L 103
           L +F                +P                   + +L K  L         +
Sbjct: 378 LSVF-----------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 104 TIVTLSLESKCIPYD------KLLKELDISNVRDLEDLIIEA----IYSDIIH----GKL 149
           +I ++ LE K    +       ++   +I    D +DLI        YS I H     + 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 150 DQRNSSLE---LDFA-IGRDIN--------PGDVTNMITEFQAW----SDSCAN---VLK 190
            +R +      LDF  + + I          G + N + + + +     D+      ++ 
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTN 229
           AI   + K      ++L  S   D  +L I  +L  +  
Sbjct: 547 AILDFLPKIE----ENLICSKYTD--LLRI--ALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 40/182 (21%)

Query: 11  TNPLEQFVLLAKTTKGAA------AVELIKQVLEAPGIFMFKELIDM-PLIKELDTS--- 60
            N L ++ L+ K  K +        +EL  ++       + + ++D   + K  D+    
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLI 465

Query: 61  -PHA-GY------YHLLK--------LFAHGTYQDY--LKQKEELKLPEMTQLQKKKLQN 102
            P+   Y      +HL          LF    + D+  L+QK  ++           + N
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDFRFLEQK--IRHDSTAWNASGSILN 522

Query: 103 LTIVTLSLESKCI-----PYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLE 157
            T+  L      I      Y++L+  + +  +  +E+ +I + Y+D++   L   + ++ 
Sbjct: 523 -TLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Query: 158 LD 159
            +
Sbjct: 581 EE 582

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	100.0
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	100.0
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	99.36
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	98.89
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	98.67
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	98.66
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.48
1ufm_A	84	COP9 complex subunit 4; helix-turn-helix, structur	98.21
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	98.13
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	97.83
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	93.91
1wi9_A	72	Protein C20ORF116 homolog; helix-turn-helix motif,	92.33
3df8_A	111	Possible HXLR family transcriptional factor; APC89	88.65
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	87.41
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	86.48
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	83.69
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	82.27
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	80.56
3r0a_A	123	Putative transcriptional regulator; structural gen	80.36

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}

Probab=100.00  E-value=5.4e-49  Score=335.21  Aligned_cols=165  Identities=41%  Similarity=0.700  Sum_probs=156.3

Q ss_pred             ccCCcchHHHHHhhcccchHHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhhh
Q psy10889          7 SGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEE   86 (267)
Q Consensus         7 ~~~~~~~le~fl~lak~~k~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~~   86 (267)
                      +.++.+.||+|+++|+++++.+|+++|.+||.+|++|+|||||.+|+|++|++++|+|+++||++|++|||.+|.++.+ 
T Consensus         4 ~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~-   82 (169)
T 3chm_A            4 EQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNAT-   82 (169)
T ss_dssp             CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGG-
T ss_pred             hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHH-
Confidence            5677889999999999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             ccCchhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHH-HHHhcCccEEEecCCCCeEEEEeecCCC
Q psy10889         87 LKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII-EAIYSDIIHGKLDQRNSSLELDFAIGRD  165 (267)
Q Consensus        87 ~~~p~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI-~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd  165 (267)
                       .+|+|++.+.+|||+|||++||..+++|||++|+++|+|+|+++||+||| +||+.|||+|||||++++|+|+|++|||
T Consensus        83 -~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~  161 (169)
T 3chm_A           83 -RLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD  161 (169)
T ss_dssp             -GSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred             -hCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence             89999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCCcHHH
Q psy10889        166 INPGDVTN  173 (267)
Q Consensus       166 ~~~~q~~~  173 (267)
                      |+++||..
T Consensus       162 l~~~qi~~  169 (169)
T 3chm_A          162 LRPGQLGN  169 (169)
T ss_dssp             CCC-----
T ss_pred             cCHHhccC
Confidence            99999963

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-35  Score=277.37  Aligned_cols=173  Identities=19%  Similarity=0.376  Sum_probs=120.5

Q ss_pred             chHHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCC-CchhHHHHHHHHhcCCHhHHHhhhhh-c-cCchhHHH---HH
Q psy10889         24 TKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTS-PHAGYYHLLKLFAHGTYQDYLKQKEE-L-KLPEMTQL---QK   97 (267)
Q Consensus        24 ~k~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s-~~~~~~~LL~lFa~Gt~~dy~~~~~~-~-~~p~L~~~---~~   97 (267)
                      .+...++.++..||.+|++|+||+||.+|.+++|.++ ++.|+++||.+|++||+.+|.++... . ..|.|.+.   ..
T Consensus       209 ~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~  288 (393)
T 4b4t_O          209 ERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLR  288 (393)
T ss_dssp             HHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHH
Confidence            3567899999999999999999999999999999765 69999999999999999999875321 1 56777653   58


Q ss_pred             HHHHhHHhhhccc--CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHH
Q psy10889         98 KKLQNLTIVTLSL--ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMI  175 (267)
Q Consensus        98 ~KLr~LtLlsLa~--~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~  175 (267)
                      +|+|++++++|+.  .++.|||++|+++|+|+ +++||+|||+||+.|+|+|+|||++++|+|+|++||+|+++||..|.
T Consensus       289 ~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~  367 (393)
T 4b4t_O          289 QKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMK  367 (393)
T ss_dssp             HHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSSCEETTTTEECC-----------------
T ss_pred             HHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHH
Confidence            9999999999984  47899999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy10889        176 TEFQAWSDSCANVLKAIETQIG  197 (267)
Q Consensus       176 ~~L~~W~~~~~~vl~~ie~~i~  197 (267)
                      ++|..|+++|++++..|+++.+
T Consensus       368 ~~L~~W~~~v~~l~~~ve~~~~  389 (393)
T 4b4t_O          368 DRLVEWNDQVEKLGKKMEARGQ  389 (393)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=99.36  E-value=4.2e-12  Score=120.64  Aligned_cols=161  Identities=9%  Similarity=0.054  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhh----hc-cCchhHH---HHHH
Q psy10889         27 AAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKE----EL-KLPEMTQ---LQKK   98 (267)
Q Consensus        27 ~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~----~~-~~p~L~~---~~~~   98 (267)
                      ..+.=++..+|..-+.+.+.+++..|......+.+..|+.+|+..|..|++..|.....    .+ ..|.|.+   ...+
T Consensus       221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~  300 (394)
T 3txn_A          221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD  300 (394)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            34555777788888889999999988766664445788999999999999999987643    12 3455543   4688


Q ss_pred             HHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHH
Q psy10889         99 KLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEF  178 (267)
Q Consensus        99 KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L  178 (267)
                      +++...|..+...++.|+++.|++.++++ ++++|.+|+++|..|.|.|+|||++++|++....+|+   ...+...+.+
T Consensus       301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~l  376 (394)
T 3txn_A          301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLETI  376 (394)
T ss_dssp             HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-----------------
T ss_pred             HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHHH
Confidence            99999999999999999999999999997 9999999999999999999999999999998776664   3345566788


Q ss_pred             HHHHHHHHHHHHH
Q psy10889        179 QAWSDSCANVLKA  191 (267)
Q Consensus       179 ~~W~~~~~~vl~~  191 (267)
                      .+|...++.++..
T Consensus       377 ~~ls~vVd~L~~~  389 (394)
T 3txn_A          377 QSMGKVVDTLYQK  389 (394)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877743

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=2.7e-09  Score=102.27  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhhh----c-cCchh---------
Q psy10889         27 AAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEE----L-KLPEM---------   92 (267)
Q Consensus        27 ~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~~----~-~~p~L---------   92 (267)
                      .+..-+|..++.+|..-.+..++.-+.... ...+...+..|+.+|..+.+..|......    + ..|..         
T Consensus       259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  337 (445)
T 4b4t_P          259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH  337 (445)
T ss_dssp             HHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence            456677788888888777888876542211 11234678999999999998888765331    1 11211         


Q ss_pred             HHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHH
Q psy10889         93 TQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVT  172 (267)
Q Consensus        93 ~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~  172 (267)
                      -......++.-.|..++..++.|+++.|++.|+++ ++++|.++.++|..|.|.|+|||++++|++.....         
T Consensus       338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~---------  407 (445)
T 4b4t_P          338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN---------  407 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCC---------
Confidence            23456777777788888889999999999999998 99999999999999999999999999877654321         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10889        173 NMITEFQAWSDSCANVLKAIETQIGKANSE  202 (267)
Q Consensus       173 ~L~~~L~~W~~~~~~vl~~ie~~i~~a~~~  202 (267)
                       -.+.|..|..++++++..|+.-..-.+.|
T Consensus       408 -~~~~l~~W~~~i~~l~~~v~k~~~lI~kE  436 (445)
T 4b4t_P          408 -SSQLLNEWSHNVDELLEHIETIGHLITKE  436 (445)
T ss_dssp             ------------------------------
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             13578999999999999997655555443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=98.67  E-value=2.4e-08  Score=86.59  Aligned_cols=99  Identities=13%  Similarity=0.199  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhhccCchhH---HHHHHHHHhHHhhhccc------CCcccCHHHHHHHhCCC-----C
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEELKLPEMT---QLQKKKLQNLTIVTLSL------ESKCIPYDKLLKELDIS-----N  128 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~~~~p~L~---~~~~~KLr~LtLlsLa~------~~k~IsY~~I~~~L~I~-----~  128 (267)
                      ..+.+|..++..||+..|.+..+......+.   -..+.|+|.+.+.++..      ....||++.|+.+|+++     +
T Consensus        81 ~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~  160 (203)
T 3t5x_A           81 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD  160 (203)
T ss_dssp             GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence            3588999999999999998865411101111   13578999988887764      57899999999999753     4


Q ss_pred             hhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889        129 VRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA  161 (267)
Q Consensus       129 ~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~  161 (267)
                      .+|||.+|..+|+.|.|+|+||+.++++.++..
T Consensus       161 ~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~  193 (203)
T 3t5x_A          161 IDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ  193 (203)
T ss_dssp             HHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred             HHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence            899999999999999999999999999998754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.2e-07  Score=90.22  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhCCCeeec-hhhhcChhhhhhcC-CC-chhHHHHHHHHhcCCHhHHHhhh-h----hc-cCchhH---HHH
Q psy10889         29 AVELIKQVLEAPGIFMF-KELIDMPLIKELDT-SP-HAGYYHLLKLFAHGTYQDYLKQK-E----EL-KLPEMT---QLQ   96 (267)
Q Consensus        29 a~~lI~~aL~~p~vf~F-~eLL~~p~vq~L~~-s~-~~~~~~LL~lFa~Gt~~dy~~~~-~----~~-~~p~L~---~~~   96 (267)
                      +.-.+..++..++.-++ ..++..|.+..... .| ..++.+++..|-.+.+..|.... .    .+ ..|.|.   ...
T Consensus       250 ~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l  329 (429)
T 4b4t_R          250 ATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFF  329 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHH
Confidence            34444455554443332 23566666655433 33 35677888889889998875431 1    11 224443   457


Q ss_pred             HHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCC
Q psy10889         97 KKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRD  165 (267)
Q Consensus        97 ~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd  165 (267)
                      .+.+|...++.++..+++|+++.+++.|+++ +.++|.+|.++|..|-|.|||||++++|++....+|.
T Consensus       330 ~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~  397 (429)
T 4b4t_R          330 VREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN  397 (429)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----
T ss_pred             HHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence            9999999999999999999999999999998 9999999999999999999999999999998777764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=4.6e-07  Score=82.37  Aligned_cols=127  Identities=15%  Similarity=0.191  Sum_probs=82.1

Q ss_pred             chhHHHHHHHHhcCCHhHHHhhhh----hc-cCchhH---HHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHH
Q psy10889         62 HAGYYHLLKLFAHGTYQDYLKQKE----EL-KLPEMT---QLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLE  133 (267)
Q Consensus        62 ~~~~~~LL~lFa~Gt~~dy~~~~~----~~-~~p~L~---~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE  133 (267)
                      ...+..++..|..+++..|.....    .+ ..+.+.   ......++...+..++...+.|+++.|++.|+++ +.++|
T Consensus       296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E  374 (434)
T 4b4t_Q          296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE  374 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence            456888999999999999987543    11 233332   3457778888899999999999999999999998 99999


Q ss_pred             HHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10889        134 DLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKA  199 (267)
Q Consensus       134 ~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~~vl~~ie~~i~~a  199 (267)
                      .+|.++|..|.|.|+|||.+++|++.....++          .....|.+.++++...|+....+|
T Consensus       375 ~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd~L~~ka  430 (434)
T 4b4t_Q          375 GKLSQMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVDQLFEKA  430 (434)
T ss_dssp             HHHHHHHHHTSSCCEEETTTTEEECC----------------------------------------
T ss_pred             HHHHHHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999986554442          234455555555555555444333

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47

Probab=98.21  E-value=3.4e-06  Score=63.31  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             hcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecC
Q psy10889        107 TLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIG  163 (267)
Q Consensus       107 sLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~  163 (267)
                      .++..+..|+++.|++.|+++ .+++|.+|.++|..|-|.|+|||++++|+++...+
T Consensus        23 ~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~   78 (84)
T 1ufm_A           23 SASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA   78 (84)
T ss_dssp             HHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred             HHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence            456679999999999999999 99999999999999999999999999998764333

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=3.6e-06  Score=82.33  Aligned_cols=92  Identities=22%  Similarity=0.340  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhh----c---cCchhHHHHHHHHHhHH----hhhcccCCcccCHHHHHHHhCCCChhh
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEE----L---KLPEMTQLQKKKLQNLT----IVTLSLESKCIPYDKLLKELDISNVRD  131 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~----~---~~p~L~~~~~~KLr~Lt----LlsLa~~~k~IsY~~I~~~L~I~~~~e  131 (267)
                      .+|+.|..+|..|++..|.+....    +   +.-.    ++.+++...    |..+......||+++|+..|++++..+
T Consensus       343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~----LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~ee  418 (523)
T 4b4t_S          343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ----LCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQT  418 (523)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH----HHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhH----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHH
Confidence            458999999999999999886431    1   1112    333443332    444555678899999999999987889


Q ss_pred             HHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889        132 LEDLIIEAIYSDIIHGKLDQRNSSLEL  158 (267)
Q Consensus       132 vE~lvI~aI~~gLI~GkIDQ~~~~v~V  158 (267)
                      +|.+|-++|+.|.|+|+||+.++.|..
T Consensus       419 aE~iVAkmI~dG~I~A~Idh~~g~v~s  445 (523)
T 4b4t_S          419 VEYMVSRAIRDGVIEAKINHEDGFIET  445 (523)
T ss_dssp             HHHHHHHHHHHTSSCCEECTTTCCEEC
T ss_pred             HHHHHHHHHHcCCceEEEecCCCEEEe
Confidence            999999999999999999999997653

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=97.83  E-value=2.4e-05  Score=75.43  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             HHHHHHHHhcCCHhHHHhhhhhccCchh---H-HHHHHHHHhHHhhhcc----------cCCcccCHHHHHHHhCC----
Q psy10889         65 YYHLLKLFAHGTYQDYLKQKEELKLPEM---T-QLQKKKLQNLTIVTLS----------LESKCIPYDKLLKELDI----  126 (267)
Q Consensus        65 ~~~LL~lFa~Gt~~dy~~~~~~~~~p~L---~-~~~~~KLr~LtLlsLa----------~~~k~IsY~~I~~~L~I----  126 (267)
                      +..|..++..||+..|.+..+......+   . -..+.|+|.+++-+|.          .+...||++.|+.+|++    
T Consensus       299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~  378 (455)
T 3t5v_B          299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP  378 (455)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence            7789999999999999986441100111   1 2356777777543332          23378999999999984    


Q ss_pred             ----------------CChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889        127 ----------------SNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA  161 (267)
Q Consensus       127 ----------------~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~  161 (267)
                                      .+.+|||-+|..+|+.|+|+|+||+.++++.++..
T Consensus       379 ~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~  429 (455)
T 3t5v_B          379 TFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT  429 (455)
T ss_dssp             CTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred             cccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence                            14889999999999999999999999999999755

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=93.91  E-value=0.1  Score=45.40  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHhcCCHhHHHhhhhhccCc--h---hHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHH
Q psy10889         63 AGYYHLLKLFAHGTYQDYLKQKEELKLP--E---MTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII  137 (267)
Q Consensus        63 ~~~~~LL~lFa~Gt~~dy~~~~~~~~~p--~---L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI  137 (267)
                      ...++|-+.+..|+|..|-....  +.|  .   +.+....++|.-.+-.++..+..||.+++++.|+++|.++++.++-
T Consensus       136 ~~al~l~~al~~GnY~kff~l~~--~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~  213 (229)
T 4b0z_A          136 EWVISLEQNVMEGAFDKVASMIR--SCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE  213 (229)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--TCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence            45678899999999999977655  333  2   3455688899988888888889999999999999999999999998


Q ss_pred             H
Q psy10889        138 E  138 (267)
Q Consensus       138 ~  138 (267)
                      +
T Consensus       214 ~  214 (229)
T 4b0z_A          214 E  214 (229)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47

Probab=92.33  E-value=0.17  Score=36.61  Aligned_cols=54  Identities=15%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889        105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD  159 (267)
Q Consensus       105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~  159 (267)
                      +++....+++++.++||.++++. ..++-+-|-+....|.|.|-||...+-++|+
T Consensus        12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs   65 (72)
T 1wi9_A           12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLTGVIDDRGKFIYIT   65 (72)
T ss_dssp             HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred             HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence            45556678999999999999998 8888888899999999999999999999886

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=88.65  E-value=2.2  Score=32.29  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             HHHHHhHHhhhcccCCcccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE-eecCCCCCCCcHHHH
Q psy10889         97 KKKLQNLTIVTLSLESKCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD-FAIGRDINPGDVTNM  174 (267)
Q Consensus        97 ~~KLr~LtLlsLa~~~k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~-~~~~Rd~~~~q~~~L  174 (267)
                      -.|-+.+-|..|......++|.+|++.+ +|+ ...|=.-|=..-..|||.-+.+   ..+.+. ...|+     ++...
T Consensus        25 ~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~---r~~~y~LT~~G~-----~l~~~   95 (111)
T 3df8_A           25 GKKYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIKDLIDSGLVERRSG---QITTYALTEKGM-----NVRNS   95 (111)
T ss_dssp             HSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHHHHHHTTSEEEEES---SSEEEEECHHHH-----HHHHH
T ss_pred             cCccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHHHHHHCCCEEEeec---CcEEEEECccHH-----HHHHH
Confidence            3445555555565444456799999999 898 8888888888899999999888   223222 12333     45556


Q ss_pred             HHHHHHHHHHHH
Q psy10889        175 ITEFQAWSDSCA  186 (267)
Q Consensus       175 ~~~L~~W~~~~~  186 (267)
                      ...|..|....+
T Consensus        96 l~~l~~w~~~~~  107 (111)
T 3df8_A           96 LMPLLQYISVLD  107 (111)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            777888877643

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=87.41  E-value=1.4  Score=32.04  Aligned_cols=59  Identities=8%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             HHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889         99 KLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD  159 (267)
Q Consensus        99 KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~  159 (267)
                      ..++|.++.-...+..+++.+||+.|+|+ ...|...|-..-..|+|.-. +.....-.|.
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~   70 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKE-AGTPPLWKIA   70 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEec-CCCCCeeEEe
Confidence            34455555543445689999999999998 89999999999999999643 3444444443

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=86.48  E-value=5.5  Score=29.62  Aligned_cols=70  Identities=10%  Similarity=0.071  Sum_probs=51.5

Q ss_pred             CcccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHH
Q psy10889        112 SKCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSC  185 (267)
Q Consensus       112 ~k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~  185 (267)
                      ...+++.+|++.+ +|+ ...|=..|=.....|+|..+-+...+....-+.++.  + .++-.....+..|....
T Consensus        25 ~~~~~~~eLa~~l~~is-~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~~   95 (107)
T 2hzt_A           25 HGKKRTSELKRLMPNIT-QKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGANH   95 (107)
T ss_dssp             TCCBCHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHHh
Confidence            3578999999999 998 888999999999999999999876655444333332  1 13445667777887653

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=83.69  E-value=1.7  Score=31.09  Aligned_cols=48  Identities=10%  Similarity=0.114  Sum_probs=39.7

Q ss_pred             HhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEe
Q psy10889        101 QNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKL  149 (267)
Q Consensus       101 r~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkI  149 (267)
                      +.|.++.-...+..+++.+||+.|+|+ ...|...|-.....|+|.+.-
T Consensus        18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~~~g   65 (77)
T 1qgp_A           18 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEA   65 (77)
T ss_dssp             HHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEEEEC
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEecC
Confidence            355555554556689999999999998 899999999999999998864

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=82.27  E-value=1  Score=35.01  Aligned_cols=71  Identities=17%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE---ecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHH
Q psy10889        111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK---LDQRNSSLELDFAIGRDINPGDVTNMITEFQAWS  182 (267)
Q Consensus       111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk---IDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~  182 (267)
                      .+..+||.+|++.++++ ...+-..+=.....|+|.+.   +|...--..++....=.+.+.....+.+.|..|-
T Consensus        15 ~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~   88 (141)
T 1i1g_A           15 KDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD   88 (141)
T ss_dssp             HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred             HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence            34568999999999998 88888888888889999765   3332111111110000113356677777777764

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=80.56  E-value=7.9  Score=29.48  Aligned_cols=40  Identities=3%  Similarity=0.027  Sum_probs=35.2

Q ss_pred             ccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889        114 CIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS  154 (267)
Q Consensus       114 ~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~  154 (267)
                      .++..+|++.++++ ...|=.+|=.....|+|.-.-|...+
T Consensus        45 ~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~   84 (145)
T 3g3z_A           45 SRTQKHIGEKWSLP-KQTVSGVCKTLAGQGLIEWQEGEQDR   84 (145)
T ss_dssp             SBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred             CCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeccCCCCC
Confidence            49999999999998 88999999999999999987776554

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=80.36  E-value=3.1  Score=32.02  Aligned_cols=80  Identities=18%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             ccCCcc-cCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCC--CeEEEEeecCCCCCCCc-HHHHHHHHHHHHHH
Q psy10889        109 SLESKC-IPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRN--SSLELDFAIGRDINPGD-VTNMITEFQAWSDS  184 (267)
Q Consensus       109 a~~~k~-IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~--~~v~V~~~~~Rd~~~~q-~~~L~~~L~~W~~~  184 (267)
                      ...... ++-.+|++.++++ ...|-..|=.....|+|.-.-+...  +..++-.+.+    +.+ .+.+...+..|.+.
T Consensus        36 ~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~----~~~~~~~i~~~~~~~~~~  110 (123)
T 3r0a_A           36 LNEPDRWIDTDALSKSLKLD-VSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYS----KNQIRNIIQKIVQSWADR  110 (123)
T ss_dssp             HHSTTCCEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECC----HHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCC----HHHHHHHHHHHHHHHHHH
Confidence            344445 9999999999998 8999999999999999997655432  2333333322    233 45578899999998


Q ss_pred             HHHHHHHHH
Q psy10889        185 CANVLKAIE  193 (267)
Q Consensus       185 ~~~vl~~ie  193 (267)
                      +...++.+.
T Consensus       111 ~~~~l~~~~  119 (123)
T 3r0a_A          111 LGQELKEWE  119 (123)
T ss_dssp             HHHTTTTTC
T ss_pred             HHHHHHHHh
Confidence            887766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1ufma_	84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	98.3
d1wi9a_	72	Hypothetical protein C20orf116 homolog {Mouse (Mus	90.93
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	90.36
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	89.28
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	89.04
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.59
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	86.49
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	81.75

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=8e-07  Score=64.99  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             HhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889        101 QNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA  161 (267)
Q Consensus       101 r~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~  161 (267)
                      +.--|..++.-+.+|+++.|++.|+++ .+++|.+|.++|..|-|.|+|||.+++|+++..
T Consensus        17 ~Ehni~~is~~Y~~Isl~~la~~l~l~-~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~   76 (84)
T d1ufma_          17 IEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETR   76 (84)
T ss_dssp             HHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred             HHHHHHHHHHhhceeeHHHHHHHHCCC-HHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCC
Confidence            333445566778999999999999998 999999999999999999999999999988653

>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: Hypothetical protein C20orf116 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.15  Score=34.98  Aligned_cols=56  Identities=14%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889        105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA  161 (267)
Q Consensus       105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~  161 (267)
                      ++......|+++.++|+.++++. ..++=+-|-+....|.|.|-||...+-++|+=+
T Consensus        12 FI~~Ik~~Kvv~LedLAa~F~lk-tqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s   67 (72)
T d1wi9a_          12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS   67 (72)
T ss_dssp             HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred             HHHHHHHCCEeeHHHHHHHcCCc-HHHHHHHHHHHHHCCCeeeEEcCCCCEEEEcCC
Confidence            44455668999999999999998 677778888888999999999999999998744

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=90.36  E-value=0.14  Score=33.91  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889        110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG  147 (267)
Q Consensus       110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G  147 (267)
                      ..+..+||.+|++.++++ ...|..-|=+....|+|.|
T Consensus        15 ~~n~r~s~~~iA~~lgis-~~tv~~Ri~~L~~~giI~~   51 (63)
T d2cfxa1          15 KKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIKQ   51 (63)
T ss_dssp             HHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred             HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeee
Confidence            456788999999999998 9999999999999999987

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.16  Score=33.52  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=36.1

Q ss_pred             hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889        105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK  148 (267)
Q Consensus       105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk  148 (267)
                      |+++-..+..+||.+|++.++++ ...|-.=+=.....|+|.|.
T Consensus        10 IL~~L~~~~r~s~~eiA~~l~ls-~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1          10 ILEALMGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeE
Confidence            33333456789999999999998 99999999999999999864

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.04  E-value=0.14  Score=33.42  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             hhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889        106 VTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG  147 (267)
Q Consensus       106 lsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G  147 (267)
                      +.+-..+..+||.+|++.|+++ ...|..-+=+....|+|.|
T Consensus         9 l~~L~~n~r~s~~eiA~~l~ls-~~~v~~Ri~~L~~~giI~~   49 (60)
T d2cyya1           9 IKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKK   49 (60)
T ss_dssp             HHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEe
Confidence            3333456788999999999998 8999998888889999985

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.59  E-value=0.16  Score=33.31  Aligned_cols=41  Identities=20%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             hhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889        106 VTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG  147 (267)
Q Consensus       106 lsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G  147 (267)
                      +.+-..+..+||.+|++.++++ ...|-.-+=+....|+|.+
T Consensus         9 l~~L~~n~r~s~~~lA~~~gls-~~~v~~Ri~~L~~~giI~~   49 (60)
T d1i1ga1           9 LEILEKDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIEG   49 (60)
T ss_dssp             HHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEe
Confidence            3333456889999999999998 9999999999999999974

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.49  E-value=1.2  Score=31.02  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy10889        112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKA  191 (267)
Q Consensus       112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~~vl~~  191 (267)
                      ...+++.+|++.++++ ...|=..+=.....|+|..+-++.++...+-..++.     -    .+.+..|...+..+++.
T Consensus        28 ~~~~~~~eLa~~l~is-~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~-----G----~~~~~~~~~~~~~~~~~   97 (100)
T d1ub9a_          28 RRKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDF-----G----MEEAKRFLSSLKAVIDG   97 (100)
T ss_dssp             HSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH-----H----HHHHHHHHHHHHHHHHH
T ss_pred             CCCeeHHHHHHHHhhc-cccccHHHHHHhhhceeEEEEcCcCCccccccCCHH-----H----HHHHHHHHHHHHHHHHh
Confidence            4568999999999998 788888888888999999998887665444333221     1    23445565666666555


Q ss_pred             H
Q psy10889        192 I  192 (267)
Q Consensus       192 i  192 (267)
                      |
T Consensus        98 l   98 (100)
T d1ub9a_          98 L   98 (100)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=81.75  E-value=0.7  Score=30.68  Aligned_cols=48  Identities=21%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             HHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccE
Q psy10889         98 KKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIH  146 (267)
Q Consensus        98 ~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~  146 (267)
                      ++.-.-.|+.+...+..++-.+|++.++++ ...|-..|=+.+..|+|.
T Consensus         4 r~~N~~~Il~~l~~~g~~sr~eLa~~~glS-~~Tv~~~l~~L~~~Glv~   51 (71)
T d1z05a1           4 KQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIH   51 (71)
T ss_dssp             HHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence            334444455555566789999999999998 999999999999999996