Psyllid ID: psy10892

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETAR
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccHHHHHHHHHccccccccccccccccccHHHcccccccccccccccccccccEEEEEEEEccccEEEEEEcccccccccEEcccEEccccccHHHHHHHHHHHHHccEEEEcEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccEEEEEEEEEEccccEEEEEEEccccccccEEccEEEccccccHHHHHHHHHHHHHcEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
MYRYSKNIMANHEAIITPVLenifsgkvchdgedqcdydlteqadfapargvipesfvprlKKTVTYIVMAVIINSKNAVLMMQEAKSICngawylpagkveegeTLEEAVKREVLEetglemaptTLLAVETAR
Flexible Loop (DISEMBL)
MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFApargvipesfvprlKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREvleetglemapttllavetar
Low Complexity Region (SEG)
MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETAR
Disordered region (IsUnstruct)
******NIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVE*********************************
Disordered Region (DISOPRED)
*YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAP********FVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET**
Disordered Region (DISEMBL)
MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETAR
Disordered Region (DISPRO)
MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q3U2V3	323	8-oxo-dGDP phosphatase NU	yes	N/A	0.666	0.278	0.516	9e-19
Q641Y7	323	8-oxo-dGDP phosphatase NU	yes	N/A	0.659	0.275	0.510	2e-18
Q6ZVK8	323	8-oxo-dGDP phosphatase NU	yes	N/A	0.629	0.263	0.534	3e-18
Q568Q0	325	8-oxo-dGDP phosphatase NU	yes	N/A	0.533	0.221	0.597	2e-17
O45830	365	Putative nudix hydrolase	yes	N/A	0.540	0.2	0.486	2e-13
P46351	413	Uncharacterized 45.4 kDa	N/A	N/A	0.444	0.145	0.412	7e-08
Q9CA40	147	Nudix hydrolase 1 OS=Arab	yes	N/A	0.511	0.469	0.376	8e-07
Q58549	169	ADP-ribose pyrophosphatas	yes	N/A	0.548	0.437	0.423	1e-06
P32090	112	8-oxo-dGTP diphosphatase	N/A	N/A	0.511	0.616	0.385	4e-06
P53369	156	7,8-dihydro-8-oxoguanine	no	N/A	0.444	0.384	0.35	5e-05

>sp|Q3U2V3|NUD18_MOUSE 8-oxo-dGDP phosphatase NUDT18 OS=Mus musculus GN=Nudt18 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 40  LTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAG 99
           L +  D  PA   +   F  RL+K V Y+V+AV +N ++ VLM+QEAK  C G WYLPAG
Sbjct: 20  LVQSCDSEPAGKPL---FPVRLRKNVCYVVLAVFLNEQDEVLMIQEAKRECRGTWYLPAG 76

Query: 100 KVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
           ++E GET+ EA++REV EE GL   P TLL+VE
Sbjct: 77  RMEPGETIVEAMQREVKEEAGLLCEPVTLLSVE 109

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q641Y7|NUD18_RAT 8-oxo-dGDP phosphatase NUDT18 OS=Rattus norvegicus GN=Nudt18 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 5/94 (5%)

Query: 40  LTEQADFAPARGVIPESFVP-RLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPA 98
           L +  D  PA     +  +P RL+K V Y+V+AV +N ++ VLM+QEAK  C G WYLPA
Sbjct: 20  LVQSCDSEPAG----KPLLPVRLRKNVCYVVLAVFLNEQDEVLMIQEAKRECRGTWYLPA 75

Query: 99  GKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
           G++E GET+ EA++REV EE GL   P TLL+VE
Sbjct: 76  GRMEPGETIVEAMQREVKEEAGLLCEPVTLLSVE 109

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6ZVK8|NUD18_HUMAN 8-oxo-dGDP phosphatase NUDT18 OS=Homo sapiens GN=NUDT18 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 3/88 (3%)

Query: 45  DFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEG 104
           D APA G  P     RL+K V Y+V+AV ++ ++ VL++QEAK  C G+WYLPAG++E G
Sbjct: 25  DSAPA-GEPPAPV--RLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPG 81

Query: 105 ETLEEAVKREVLEETGLEMAPTTLLAVE 132
           ET+ EA++REV EE GL   P TLL+VE
Sbjct: 82  ETIVEALQREVKEEAGLHCEPETLLSVE 109

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q568Q0|NUD18_DANRE 8-oxo-dGDP phosphatase NUDT18 OS=Danio rerio GN=nudt18 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 54/72 (75%)

Query: 61  LKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
           L+K V YIV AVI NSK  VLM+QEAK  C G WYLPAG++EE E++ EA++REV EE G
Sbjct: 35  LRKNVCYIVGAVIFNSKEEVLMVQEAKRECYGRWYLPAGRMEECESILEALQREVREEAG 94

Query: 121 LEMAPTTLLAVE 132
           ++  P TLL V+
Sbjct: 95  IDCQPITLLLVQ 106

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|O45830|NDX1_CAEEL Putative nudix hydrolase 1 OS=Caenorhabditis elegans GN=ndx-1 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 60  RLKKTVTYIVMAVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVL 116
           RL   V Y+  A+I+ ++     VL++QEAK  C G WY+PAG+VE GET+EEAV REV 
Sbjct: 67  RLHDNVNYVAAAIILRNQGDDTEVLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVK 126

Query: 117 EETGLEMAPTTLLAVE 132
           EETG       LL+++
Sbjct: 127 EETGYSCDVVELLSLQ 142

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P46351|YTH1_PANTH Uncharacterized 45.4 kDa protein in thiaminase I 5'region OS=Paenibacillus thiaminolyticus PE=4 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V  ++++ +  VL+M+ A    NG W LP+G VE GE++EEA+ RE+ EETGL++    L
Sbjct: 278 VAGIVMDERGRVLLMKRAD---NGCWGLPSGHVERGESVEEAIVREIREETGLQVEVMRL 334

Query: 129 LAV 131
           + +
Sbjct: 335 VGL 337

Paenibacillus thiaminolyticus (taxid: 49283)

>sp|Q9CA40|NUDT1_ARATH Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query: 63  KTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           + +  + + V I + N++L+ +   SI N  + LP G +E GE+ EE   REV+EETGL+
Sbjct: 5   EAIPRVAVVVFILNGNSILLGRRRSSIGNSTFALPGGHLEFGESFEECAAREVMEETGLK 64

Query: 123 MAPTTLLAV 131
           +    LL V
Sbjct: 65  IEKMKLLTV 73

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Its substrate specificity is unclear. In vitro, it can use NTP, dNTP, 8-oxo-GTP, 8-oxo-dGTP, dGTP, dATP, dTTP or dihydroneopterin triphosphate (DHNTP) as substrate. Has some NADH pyrophosphatase activity in vitro; however, such activity may not be relevant in vivo due to the high concentration of manganese used during the experiments. Plays an important role in protection against oxidative DNA and RNA damage by removing oxidatively damaged form of guanine.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q58549|ADPP_METJA ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nudF PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 4/78 (5%)

Query: 61  LKKTVTYIVMAV----IINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVL 116
           LKK   Y+  AV    II   N +L+++   +   G + LP G VE GET+EEAV RE+ 
Sbjct: 32  LKKYRLYLHPAVAVDGIIEKDNKILLIKRKNNPFKGCFALPGGFVECGETVEEAVVREIK 91

Query: 117 EETGLEMAPTTLLAVETA 134
           EETGL     +LL V ++
Sbjct: 92  EETGLIPKVKSLLGVYSS 109

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P32090|MUTT_PROVU 8-oxo-dGTP diphosphatase OS=Proteus vulgaris GN=mutT PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 61  LKKTVTYIVMAVIINSKNAVLMMQEA-KSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
           + K   +I   VI +  N V + Q   KS   G W  P GK+E+ ET E+A+ RE+ EE 
Sbjct: 2   MDKKKLHIAAGVICDKHNNVFIAQRPLKSHMGGFWEFPGGKLEDNETPEQALLRELQEEI 61

Query: 120 GLEMAPTTLL 129
           G+++   TLL
Sbjct: 62  GIDVTQCTLL 71

Involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with almost equal efficiency thus leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate.

Proteus vulgaris (taxid: 585)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|P53369|8ODP_RAT 7,8-dihydro-8-oxoguanine triphosphatase OS=Rattus norvegicus GN=Nudt1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 64  TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           + + +   V++     VL+  + +    G W    GKV+EGET+E+  KRE+LEE+GL +
Sbjct: 2   STSRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGAKRELLEESGLRV 61

Antimutagenic. Responsible for preventing misincorporation of 8-oxo-dGTP into DNA thus preventing A:T to C:G transversions.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
242017812	335	mutt/nudix hydrolase, putative [Pediculu	0.755	0.304	0.619	3e-28
169657216	135	nudix hydrolase [Artemia franciscana]	0.851	0.851	0.576	7e-27
321459522	342	hypothetical protein DAPPUDRAFT_202142 [	0.829	0.327	0.530	2e-26
193669254	337	PREDICTED: nucleoside diphosphate-linked	0.896	0.359	0.5	5e-26
345482602	170	PREDICTED: nucleoside diphosphate-linked	0.888	0.705	0.512	1e-25
346469605	335	hypothetical protein [Amblyomma maculatu	0.859	0.346	0.516	7e-25
427788255	335	Putative nudix hydrolase fgf-2 [Rhipicep	0.881	0.355	0.52	1e-24
195444599	346	GK11300 [Drosophila willistoni] gi|19416	0.851	0.332	0.529	6e-24
241997520	332	nudix hydrolase, putative [Ixodes scapul	0.881	0.358	0.496	1e-23
157115864	336	7,8-dihydro-8-oxoguanine-triphosphatase,	0.733	0.294	0.578	2e-23

>gi|242017812|ref|XP_002429380.1| mutt/nudix hydrolase, putative [Pediculus humanus corporis] gi|212514293|gb|EEB16642.1| mutt/nudix hydrolase, putative [Pediculus humanus corporis]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 78/105 (74%), Gaps = 3/105 (2%)

Query: 33  EDQCDYDLTEQADFAPARGVIP---ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSI 89
           E  CD+ L +Q +   A+GV P     +VP + KTVTYIV+ V+INSKN VLMMQEAK  
Sbjct: 20  ELSCDFTLADQNEAIVAKGVAPLAASDYVPIVSKTVTYIVVGVLINSKNEVLMMQEAKKS 79

Query: 90  CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134
           C G WYLPAG++E  ET+EEAVKREVLEETGL M P TLL+VE+A
Sbjct: 80  CAGQWYLPAGRMEPNETIEEAVKREVLEETGLNMKPNTLLSVESA 124

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|169657216|gb|ACA62950.1| nudix hydrolase [Artemia franciscana]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 79/118 (66%), Gaps = 3/118 (2%)

Query: 20  LENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPES---FVPRLKKTVTYIVMAVIINS 76
           LE++  G      ED  D+ L +Q +   A+G+ P +   +VP  KKTVTYIVMA I N 
Sbjct: 8   LEDLLEGLDPVVTEDYVDFTLKQQNEVQIAKGITPSAPANYVPVTKKTVTYIVMAAITND 67

Query: 77  KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134
              VL MQEAKS C G WYLPAGKVE GE LE A KREV EETGLE+ PTTLLA+ETA
Sbjct: 68  AGDVLFMQEAKSSCAGQWYLPAGKVEPGEDLETACKREVKEETGLEIMPTTLLAIETA 125

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459522|gb|EFX70574.1| hypothetical protein DAPPUDRAFT_202142 [Daphnia pulex]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 83/115 (72%), Gaps = 3/115 (2%)

Query: 23  IFSGKVCHDGEDQCDYDLTEQADFAPARGVIPES---FVPRLKKTVTYIVMAVIINSKNA 79
           + +G+   + +D CD+ L +Q + A ++G+ P +   FVP LK++V Y+VMAVIIN KN 
Sbjct: 11  LLNGRDAEEPQDFCDFTLEDQNEAAISKGLAPSAPPDFVPILKQSVCYVVMAVIINEKNE 70

Query: 80  VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134
           +LMMQEAKS C G WYLPAG+VE  E++ +A KREVLEETGL    +TLL VE+A
Sbjct: 71  ILMMQEAKSSCAGQWYLPAGRVEPNESIMDAFKREVLEETGLTAEASTLLMVESA 125

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669254|ref|XP_001951360.1| PREDICTED: nucleoside diphosphate-linked moiety X motif 18-like [Acyrthosiphon pisum]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 3/124 (2%)

Query: 14  AIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP---ESFVPRLKKTVTYIVM 70
           A++   +  +  G+   + ++ CD+ L +Q +   A+GV P     + P  K TVTYIV+
Sbjct: 2   AMLDATVMKLLRGEALDENDELCDFTLADQNEACVAKGVTPIGPSDYKPVTKSTVTYIVL 61

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
            V++NS++ VLMMQEAKS C G WYLPAG+VE GE L +AVKRE LEETGLEM   TLL 
Sbjct: 62  VVLVNSEDEVLMMQEAKSTCAGQWYLPAGRVEPGENLHDAVKRECLEETGLEMELDTLLT 121

Query: 131 VETA 134
           VE A
Sbjct: 122 VEAA 125

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482602|ref|XP_001607809.2| PREDICTED: nucleoside diphosphate-linked moiety X motif 18-like [Nasonia vitripennis]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 3/123 (2%)

Query: 15  IITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP---ESFVPRLKKTVTYIVMA 71
           +I   + ++ +G+     +D CDY L +Q + A A G+ P    S+VP  +KTVTYIV A
Sbjct: 4   VIEDEIRHVLAGQSTRVADDLCDYSLEQQNEAAEANGIKPAVSSSYVPVCQKTVTYIVAA 63

Query: 72  VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
           V+IN  + VLMMQEAK  C G WYLPAG+VE  E L +A+KREVLEETGL M P +L+ V
Sbjct: 64  VLINEHDEVLMMQEAKPSCMGKWYLPAGRVEANENLIDAMKREVLEETGLLMDPKSLIMV 123

Query: 132 ETA 134
           E A
Sbjct: 124 ECA 126

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469605|gb|AEO34647.1| hypothetical protein [Amblyomma maculatum]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 6/122 (4%)

Query: 19  VLENIFSGK-VCHDGEDQCDYDLTEQADFAPARG----VIPESFVPRLKKTVTYIVMAVI 73
           V+ +   G+ +  D     DY L++Q +   A+G    V+P+ + P +KK+VTYIV AV 
Sbjct: 7   VIHDTLKGQAITDDAAAIIDYSLSDQVEELAAKGIESAVLPD-YKPVVKKSVTYIVAAVA 65

Query: 74  INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
           +N K  +LMMQEAKS C G WYLPAG++E GET+ EA KREVLEETGL+  P+TLL VET
Sbjct: 66  VNEKGEILMMQEAKSTCAGTWYLPAGRMEPGETIIEAAKREVLEETGLDFDPSTLLMVET 125

Query: 134 AR 135
           A+
Sbjct: 126 AQ 127

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788255|gb|JAA59579.1| Putative nudix hydrolase fgf-2 [Rhipicephalus pulchellus]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 6/125 (4%)

Query: 16  ITPVLENIFSGKVCHD-GEDQCDYDLTEQADFAPARG----VIPESFVPRLKKTVTYIVM 70
           I  V+++   G+  +D   D  DY L +Q +   A+G    V+P+ + P +KK+VTYIV 
Sbjct: 4   IESVIQDTLKGQAINDDAADIIDYSLADQVEELAAKGIESAVLPD-YKPVVKKSVTYIVA 62

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
           AV IN K  VLMMQEAKS C G WYLPAG++E GE + EA KREV+EETGL+  P TLL 
Sbjct: 63  AVAINEKGEVLMMQEAKSSCAGTWYLPAGRMEPGENIIEAAKREVMEETGLDFDPLTLLM 122

Query: 131 VETAR 135
           VETA+
Sbjct: 123 VETAQ 127

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444599|ref|XP_002069941.1| GK11300 [Drosophila willistoni] gi|194166026|gb|EDW80927.1| GK11300 [Drosophila willistoni]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 78/119 (65%), Gaps = 4/119 (3%)

Query: 20  LENIFSGKVCHD-GEDQCDYDLTEQADFAPARGVIPES---FVPRLKKTVTYIVMAVIIN 75
           L  I  G+   D   + CD+ LTEQ   A A+GV P S   F+P L +TVTYIV  V+IN
Sbjct: 8   LRGILEGRDLGDITTELCDFSLTEQNATAEAQGVQPSSSPDFLPILGQTVTYIVACVLIN 67

Query: 76  SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134
             + VLM++EAK  C G WYLPAG++E GE++ EA  REV EETGL    TTLLAVE+A
Sbjct: 68  DHDEVLMIEEAKQSCTGKWYLPAGRMERGESIIEAAAREVFEETGLNAELTTLLAVESA 126

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241997520|ref|XP_002433409.1| nudix hydrolase, putative [Ixodes scapularis] gi|215490832|gb|EEC00473.1| nudix hydrolase, putative [Ixodes scapularis]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 84/125 (67%), Gaps = 6/125 (4%)

Query: 16  ITPVLENIFSGKVCHD-GEDQCDYDLTEQADFAPARGV----IPESFVPRLKKTVTYIVM 70
           I  V+ +   G+   D   +  DY L +Q +   A+GV    +P+ + P +KK+VTYIV 
Sbjct: 4   IESVIHDTLKGQAVTDESANIIDYSLADQVEELAAKGVESAVLPD-YKPVVKKSVTYIVA 62

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
           AV++N +  VLMMQEAKS C G WYLPAG++E GE + +AVKREV EETGL+  P+TLL 
Sbjct: 63  AVVVNERGDVLMMQEAKSSCAGTWYLPAGRMEPGEYIVDAVKREVNEETGLDFEPSTLLM 122

Query: 131 VETAR 135
           VETA+
Sbjct: 123 VETAQ 127

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115864|ref|XP_001658319.1| 7,8-dihydro-8-oxoguanine-triphosphatase, putative [Aedes aegypti] gi|108876729|gb|EAT40954.1| AAEL007364-PA [Aedes aegypti]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 73/102 (71%), Gaps = 3/102 (2%)

Query: 36  CDYDLTEQADFAPARGVIP---ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNG 92
           CD+ L EQ     A+GV P     +VP + K+VTY+V  VI+N +N VLMMQEAK  C G
Sbjct: 22  CDFSLEEQNAATEAQGVKPLASSDYVPIVGKSVTYVVACVIVNDRNEVLMMQEAKESCAG 81

Query: 93  AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134
            WYLPAG++E GET+ EA  REVLEETGL++  TTLLAVE+A
Sbjct: 82  KWYLPAGRMEPGETIMEAGMREVLEETGLKVDITTLLAVESA 123

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0037911	340	CG10898 [Drosophila melanogast	0.896	0.355	0.504	8.7e-24
MGI|MGI:2385853	323	Nudt18 "nudix (nucleoside diph	0.666	0.278	0.516	2.5e-19
UNIPROTKB|F1N0N5	323	NUDT18 "Uncharacterized protei	0.666	0.278	0.505	3.1e-19
RGD|1311802	323	Nudt18 "nudix (nucleoside diph	0.659	0.275	0.510	3.1e-19
UNIPROTKB|F1RMB9	322	NUDT18 "Uncharacterized protei	0.577	0.242	0.544	8.3e-19
UNIPROTKB|F1PDW5	325	NUDT18 "Uncharacterized protei	0.540	0.224	0.575	1.1e-18
UNIPROTKB|Q6ZVK8	323	NUDT18 "8-oxo-dGDP phosphatase	0.629	0.263	0.534	1.1e-18
UNIPROTKB|H0YBR1	289	NUDT18 "8-oxo-dGDP phosphatase	0.533	0.249	0.555	9.5e-18
ZFIN|ZDB-GENE-050417-388	325	nudt18 "nudix (nucleoside diph	0.533	0.221	0.597	2.8e-17
WB|WBGene00003578	365	ndx-1 [Caenorhabditis elegans	0.540	0.2	0.486	1.4e-13

FB|FBgn0037911 CG10898 [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/125 (50%), Positives = 77/125 (61%)

Query:    14 AIITPVLENIFSGKVCHD-GEDQCDYDLTEQADFAPARGVIPES---FVPRLKKTVTYIV 69
             A I   +  I   K   D   + CD+ L EQ   A A+GV P S   FVP L +TVTYIV
Sbjct:     2 ASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFVPILGQTVTYIV 61

Query:    70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
               V+IN  + +LM++EAK  C G WYLPAG++E GE++ EA  REV EETGL    TTLL
Sbjct:    62 ACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESITEAAAREVFEETGLNAELTTLL 121

Query:   130 AVETA 134
             AVE A
Sbjct:   122 AVEAA 126

GO:0006281 "DNA repair" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:2385853 Nudt18 "nudix (nucleoside diphosphate linked moiety X)-type motif 18" [Mus musculus (taxid:10090)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 48/93 (51%), Positives = 63/93 (67%)

Query:    40 LTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAG 99
             L +  D  PA   +   F  RL+K V Y+V+AV +N ++ VLM+QEAK  C G WYLPAG
Sbjct:    20 LVQSCDSEPAGKPL---FPVRLRKNVCYVVLAVFLNEQDEVLMIQEAKRECRGTWYLPAG 76

Query:   100 KVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
             ++E GET+ EA++REV EE GL   P TLL+VE
Sbjct:    77 RMEPGETIVEAMQREVKEEAGLLCEPVTLLSVE 109

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044715 "8-oxo-dGDP phosphatase activity" evidence=ISO

GO:0044716 "8-oxo-GDP phosphatase activity" evidence=ISO

GO:0044717 "8-hydroxy-dADP phosphatase activity" evidence=ISO

GO:0046057 "dADP catabolic process" evidence=ISO

GO:0046067 "dGDP catabolic process" evidence=ISO

GO:0046712 "GDP catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1N0N5 NUDT18 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/93 (50%), Positives = 65/93 (69%)

Query:    40 LTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAG 99
             L +  D  PA G  P     RL++ V Y+V+AV +N ++ VL++QEAK  C G+WYLPAG
Sbjct:    20 LVQNYDSGPA-GEPPAPV--RLRRNVCYVVLAVFLNEQDEVLLVQEAKKECRGSWYLPAG 76

Query:   100 KVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
             ++E GET+ EA++REV EE GL+  P TLL+VE
Sbjct:    77 RMEPGETIVEALQREVKEEAGLQCEPLTLLSVE 109

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1311802 Nudt18 "nudix (nucleoside diphosphate linked moiety X)-type motif 18" [Rattus norvegicus (taxid:10116)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/94 (51%), Positives = 65/94 (69%)

Query:    40 LTEQADFAPA-RGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPA 98
             L +  D  PA + ++P     RL+K V Y+V+AV +N ++ VLM+QEAK  C G WYLPA
Sbjct:    20 LVQSCDSEPAGKPLLPV----RLRKNVCYVVLAVFLNEQDEVLMIQEAKRECRGTWYLPA 75

Query:    99 GKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
             G++E GET+ EA++REV EE GL   P TLL+VE
Sbjct:    76 GRMEPGETIVEAMQREVKEEAGLLCEPVTLLSVE 109

GO:0000287 "magnesium ion binding" evidence=ISO;ISS

GO:0044715 "8-oxo-dGDP phosphatase activity" evidence=ISO;ISS

GO:0044716 "8-oxo-GDP phosphatase activity" evidence=ISO;ISS

GO:0044717 "8-hydroxy-dADP phosphatase activity" evidence=ISO;ISS

GO:0046057 "dADP catabolic process" evidence=ISO;ISS

GO:0046067 "dGDP catabolic process" evidence=ISO;ISS

GO:0046712 "GDP catabolic process" evidence=ISO;ISS

UNIPROTKB|F1RMB9 NUDT18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 43/79 (54%), Positives = 59/79 (74%)

Query:    55 ESFVP-RLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
             E   P RL+K V Y+V+AV +N ++ VL++QEAK  C G+WYLPAG++E GET+ EA++R
Sbjct:    31 EPLAPVRLRKNVCYVVLAVFLNEQDEVLLVQEAKKECRGSWYLPAGRMEPGETIVEALQR 90

Query:   114 EVLEETGLEMAPTTLLAVE 132
             EV EE GL   P TLL++E
Sbjct:    91 EVKEEAGLHCEPLTLLSLE 109

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1PDW5 NUDT18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 42/73 (57%), Positives = 57/73 (78%)

Query:    60 RLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
             RL+K V Y+V+AV +N ++ VL++QEAK  C G+WYLPAG++E GET+ EA++REV EE 
Sbjct:    40 RLRKNVCYVVLAVFLNEQDEVLLIQEAKKECRGSWYLPAGRMEPGETIVEALQREVKEEA 99

Query:   120 GLEMAPTTLLAVE 132
             GL   P TLL+VE
Sbjct:   100 GLYCEPLTLLSVE 112

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q6ZVK8 NUDT18 "8-oxo-dGDP phosphatase NUDT18" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/88 (53%), Positives = 63/88 (71%)

Query:    45 DFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEG 104
             D APA G  P     RL+K V Y+V+AV ++ ++ VL++QEAK  C G+WYLPAG++E G
Sbjct:    25 DSAPA-GEPPAPV--RLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPG 81

Query:   105 ETLEEAVKREVLEETGLEMAPTTLLAVE 132
             ET+ EA++REV EE GL   P TLL+VE
Sbjct:    82 ETIVEALQREVKEEAGLHCEPETLLSVE 109

GO:0044715 "8-oxo-dGDP phosphatase activity" evidence=IDA

GO:0044716 "8-oxo-GDP phosphatase activity" evidence=IDA

GO:0044717 "8-hydroxy-dADP phosphatase activity" evidence=IDA

GO:0046712 "GDP catabolic process" evidence=IDA

GO:0046067 "dGDP catabolic process" evidence=IDA

GO:0046057 "dADP catabolic process" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H0YBR1 NUDT18 "8-oxo-dGDP phosphatase NUDT18" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/72 (55%), Positives = 56/72 (77%)

Query:    61 LKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
             L+K V Y+V+AV ++ ++ VL++QEAK  C G+WYLPAG++E GET+ EA++REV EE G
Sbjct:    74 LRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAG 133

Query:   121 LEMAPTTLLAVE 132
             L   P TLL+VE
Sbjct:   134 LHCEPETLLSVE 145

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-388 nudt18 "nudix (nucleoside diphosphate linked moiety X)-type motif 18" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 43/72 (59%), Positives = 54/72 (75%)

Query:    61 LKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
             L+K V YIV AVI NSK  VLM+QEAK  C G WYLPAG++EE E++ EA++REV EE G
Sbjct:    35 LRKNVCYIVGAVIFNSKEEVLMVQEAKRECYGRWYLPAGRMEECESILEALQREVREEAG 94

Query:   121 LEMAPTTLLAVE 132
             ++  P TLL V+
Sbjct:    95 IDCQPITLLLVQ 106

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0044717 "8-hydroxy-dADP phosphatase activity" evidence=ISS

GO:0046057 "dADP catabolic process" evidence=ISS

GO:0046712 "GDP catabolic process" evidence=ISS

GO:0044715 "8-oxo-dGDP phosphatase activity" evidence=ISS

GO:0044716 "8-oxo-GDP phosphatase activity" evidence=ISS

GO:0046067 "dGDP catabolic process" evidence=ISS

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00003578 ndx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 182 (69.1 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 37/76 (48%), Positives = 50/76 (65%)

Query:    60 RLKKTVTYIVMAVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVL 116
             RL   V Y+  A+I+ ++     VL++QEAK  C G WY+PAG+VE GET+EEAV REV 
Sbjct:    67 RLHDNVNYVAAAIILRNQGDDTEVLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVK 126

Query:   117 EETGLEMAPTTLLAVE 132
             EETG       LL+++
Sbjct:   127 EETGYSCDVVELLSLQ 142

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3U2V3	NUD18_MOUSE	3, ., 6, ., 1, ., -	0.5161	0.6666	0.2786	yes	N/A
Q6ZVK8	NUD18_HUMAN	3, ., 6, ., 1, ., -	0.5340	0.6296	0.2631	yes	N/A
Q568Q0	NUD18_DANRE	3, ., 6, ., 1, ., -	0.5972	0.5333	0.2215	yes	N/A
Q641Y7	NUD18_RAT	3, ., 6, ., 1, ., -	0.5106	0.6592	0.2755	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	7e-32
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	5e-18
pfam00293	133	pfam00293, NUDIX, NUDIX domain	5e-17
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	9e-16
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	2e-14
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	5e-14
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	8e-14
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	2e-13
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	2e-13
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	3e-13
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	4e-13
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	8e-13
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	1e-12
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	7e-12
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	1e-11
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	2e-11
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	5e-11
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	6e-11
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	9e-11
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	9e-11
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	9e-11
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	2e-10
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	3e-10
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	6e-10
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	1e-09
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	2e-09
cd04688	126	cd04688, Nudix_Hydrolase_29, Members of the Nudix	2e-09
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	2e-09
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	3e-09
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	4e-09
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	5e-09
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	8e-09
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	9e-09
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	1e-08
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-08
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	4e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	6e-08
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	7e-08
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	1e-07
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	3e-07
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	3e-07
PRK00241	256	PRK00241, nudC, NADH pyrophosphatase; Reviewed	3e-07
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	3e-07
cd03430	144	cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AK	4e-07
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	6e-07
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	7e-07
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	1e-06
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	1e-06
PRK10546	135	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside t	2e-06
cd04689	125	cd04689, Nudix_Hydrolase_30, Members of the Nudix	2e-06
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	2e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	2e-06
TIGR00586	128	TIGR00586, mutt, mutator mutT protein	3e-06
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	6e-06
cd04695	131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	8e-06
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	1e-05
cd04663	126	cd04663, Nudix_Hydrolase_6, Members of the Nudix h	3e-05
cd04662	126	cd04662, Nudix_Hydrolase_5, Members of the Nudix h	1e-04
COG4119	161	COG4119, COG4119, Predicted NTP pyrophosphohydrola	1e-04
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	2e-04
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	2e-04
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	3e-04
PRK10729	202	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; P	3e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	7e-04
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.001
cd03670	186	cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase	0.001
PRK15434	159	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	0.001
PRK11762	185	PRK11762, nudE, adenosine nucleotide hydrolase Nud	0.004

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  109 bits (273), Expect = 7e-32
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 67  YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
           YIV AVI+N++  VL++QEAK  C G WYLPAG++E GET+EEAVKREV EETGL+  PT
Sbjct: 1   YIVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT 60

Query: 127 TLLAVETA 134
           TLL+VE  
Sbjct: 61  TLLSVEEQ 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 73.7 bits (181), Expect = 5e-18
 Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 67  YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
             V AVI++    VL+++ A S   G W LP G VE GETLEEA  REV EETGL++   
Sbjct: 1   VAVGAVILDEDGRVLLVRRADS-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL 59

Query: 127 TLLAV 131
            LL V
Sbjct: 60  RLLGV 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 71.8 bits (176), Expect = 5e-17
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 69  VMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           V  V++N    VL+++ ++  +  G W LP GKVE GE+ EEA  RE+ EETGL +    
Sbjct: 5   VGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLL 64

Query: 128 LLAV 131
           LL V
Sbjct: 65  LLGV 68

Length = 133

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 68.2 bits (167), Expect = 9e-16
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 69  VMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
           V A+I+     +L+++ +K      G W LP GKVEEGET EEA+KREV EETGL + P 
Sbjct: 4   VAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPF 63

Query: 127 TLLAVET 133
                  
Sbjct: 64  LRYPSTV 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 65.1 bits (159), Expect = 2e-14
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           + +  +I     +L+++ A     G W LP G VE GETLEEA +RE+ EETGL +    
Sbjct: 11  VAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE 70

Query: 128 LLAV 131
           LLAV
Sbjct: 71  LLAV 74

Length = 145

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 63.4 bits (155), Expect = 5e-14
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
             AVI      +L++Q+      G W LP G +E GE+ EEA+ REVLEETGL +     
Sbjct: 3   AYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR 61

Query: 129 LAV 131
           L  
Sbjct: 62  LGS 64

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.0 bits (154), Expect = 8e-14
 Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V AV+      VL+++ A     G W  P GKVE GETLE+A  RE+LEETGLE     L
Sbjct: 3   VGAVVFR-GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRL 61

Query: 129 LAV 131
           L V
Sbjct: 62  LTV 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 62.3 bits (152), Expect = 2e-13
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
            V AV+ + +  VL+++ +    NG W LP G VE GE+  +   REV EETGL++  T 
Sbjct: 4   GVTAVVRDDEGRVLLIRRSD---NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTG 60

Query: 128 LLAVET 133
           L+ + T
Sbjct: 61  LVGIYT 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           V  +++N KN VL++QE ++     W LP G V+ GE + +   REVLEETG++
Sbjct: 5   VGGLVLNEKNEVLVVQE-RNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGID 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 62.2 bits (151), Expect = 3e-13
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
           AVI+N +N VL++QE      G W++P+G VE+GE  ++A  RE  EETGL + P   L
Sbjct: 18  AVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFL 76

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 61.0 bits (149), Expect = 4e-13
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 68  IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           +V A+II+    +L+ Q    K +  G W  P GKVE GET E+A+ RE+ EE G+E+  
Sbjct: 3   VVAAIIIDDDGRILIAQRPAGKHL-GGLWEFPGGKVEPGETPEQALVRELREELGIEVEV 61

Query: 126 TTLLAV 131
             LLA 
Sbjct: 62  GELLAT 67

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 60.4 bits (147), Expect = 8e-13
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V   ++N K  VL+ +   S   G W LP G +E GE+ EE   REVLEETGL +     
Sbjct: 5   VGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQF 64

Query: 129 LAV 131
           L V
Sbjct: 65  LTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
             AV+ ++   VL++   +      WYLP G +E GET  EA +RE+LEE G+ +A    
Sbjct: 3   ARAVVTDADGRVLLV---RHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAE 59

Query: 129 L 129
           L
Sbjct: 60  L 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.8 bits (140), Expect = 7e-12
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V A+I      +L+++  K    G W +P GKVE GETLEEA+KRE  EETGL++     
Sbjct: 5   VGALIYAPDGRILLVRTTK--WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF 62

Query: 129 LAVETA 134
             V+ A
Sbjct: 63  AMVQEA 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
            +++N +  VL+ + +     G W LP G +E GE+LEE  +RE+ EETGLE+    LL 
Sbjct: 12  VILLNEQGEVLLQKRSD---TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLG 68

Query: 131 V 131
           V
Sbjct: 69  V 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V A I      +L+++E      G W LP G  + G +  E V +EV EETGL++    L
Sbjct: 5   VRAAIFKD-GKILLVREKSD---GLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL 60

Query: 129 LAV 131
            AV
Sbjct: 61  AAV 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
           A I+     +L+++  ++   G W +P GKV+  E +E+AV RE+ EETGL +  T LL 
Sbjct: 7   AAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLC 66

Query: 131 V 131
           V
Sbjct: 67  V 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           + +A ++      L+++E        +  PAG +E GE+L EA  RE LEETG  + PT 
Sbjct: 1   VTVAAVVERDGRFLLVEEETD-GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTA 59

Query: 128 LLAV 131
           LL +
Sbjct: 60  LLGI 63

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.1 bits (133), Expect = 9e-11
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 78  NAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           + VL+ + A +   +G W LPAG +E+GE    A  RE  EE G+ + P  L
Sbjct: 11  DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.1 bits (133), Expect = 9e-11
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWY--LPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
            VIIN +  +L+++  K    G  Y   P G +EEGET EEA KRE LEE GL++    +
Sbjct: 5   IVIINDQGEILLIRRIK---PGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI 61

Query: 129 LAVE 132
             + 
Sbjct: 62  FLIV 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.1 bits (133), Expect = 9e-11
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V  +I+N    +L+++ A+    G   LP G V+ GE+ EEA+ RE+ EETGL++   + 
Sbjct: 4   VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY 63

Query: 129 LA 130
           L 
Sbjct: 64  LF 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           I  A+I+     VL+    +      +YLP GK+E GET  +A+ RE+ EE GL++ P +
Sbjct: 2   IAAALILVRDGRVLL---VRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDS 58

Query: 128 LLAVET 133
           L  + T
Sbjct: 59  LEYLGT 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 54.1 bits (131), Expect = 3e-10
 Identities = 23/51 (45%), Positives = 27/51 (52%)

Query: 72  VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
             I   + VL++   K    G W  P GKVE GET EE   RE+ EETGL 
Sbjct: 6   CFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLT 56

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 53.3 bits (128), Expect = 6e-10
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 62  KKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
            + +  + + V +   N+VL+ +   SI +  + LP G +E GE+ EE   REV EETGL
Sbjct: 4   GEPIPRVAVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL 63

Query: 122 EMAPTTLLAV 131
           E+    LL V
Sbjct: 64  EIEKIELLTV 73

Length = 144

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLE-EAVKREVLEETGLEMAPT 126
           + + V  +    VL+ Q       G W LP GKVE GE L  EA  RE+ EETGL +   
Sbjct: 14  VAVLVGRDGPGEVLLAQRRDDG--GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDE 71

Query: 127 TLLAV 131
            L  +
Sbjct: 72  RLELL 76

Length = 161

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           V  V+ N    V + +   +   GAW  P G ++EGE  E+A  RE+ EETGL+
Sbjct: 6   VGVVLFNEDGKVFVGRRIDT--PGAWQFPQGGIDEGEDPEQAALRELEEETGLD 57

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
             A+II+    +L+ +         +  P G +E GE+ EEA+ RE  EE GL++  T L
Sbjct: 4   AAAIIIH-NGKLLVQKNPD---ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRL 59

Query: 129 LAV 131
           L V
Sbjct: 60  LGV 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 93  AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
            W  P G VE GET+EEA +REV EETG E+   TL+    
Sbjct: 22  GWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQ 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.1 bits (123), Expect = 3e-09
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           I++  +   +  VL+ + A    +G W LPAG +E GET E+   RE  EE G  +    
Sbjct: 14  IIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDG 73

Query: 128 LLAV 131
           L AV
Sbjct: 74  LYAV 77

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 68  IVMAVIINSKNAVLMMQE-AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
           I + +I N  N + + +  A +   G W  P GK+E GET E+A+ RE+ EE G+ +   
Sbjct: 6   IAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA 65

Query: 127 TLLAVET 133
           TL     
Sbjct: 66  TLFEKLE 72

Length = 129

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 71  AVII-NSKNAVLMMQEAKSICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           AVII N K  ++   +      G WY LP G  E GETLE+A  RE  EE G+++    L
Sbjct: 6   AVIIKNDKILLIKHHDD----GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL 61

Query: 129 LAV 131
           L V
Sbjct: 62  LFV 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 50.0 bits (120), Expect = 8e-09
 Identities = 18/29 (62%), Positives = 20/29 (68%)

Query: 94  WYLPAGKVEEGETLEEAVKREVLEETGLE 122
           W LP GK+E GET  EA  REV EETG+ 
Sbjct: 29  WSLPKGKLEPGETPPEAAVREVEEETGIR 57

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 49.8 bits (120), Expect = 9e-09
 Identities = 17/25 (68%), Positives = 20/25 (80%)

Query: 98  AGKVEEGETLEEAVKREVLEETGLE 122
           AG VE GE+LEEAV+REV EE G+ 
Sbjct: 31  AGFVEPGESLEEAVRREVKEEVGIR 55

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           V  +++N +  V   +        +W  P G ++ GET E+A+ RE+ EE GL
Sbjct: 11  VGIILLNRQGQVFWGRRIGQG--HSWQFPQGGIDPGETPEQAMYRELYEEVGL 61

Length = 156

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGLE 122
           LPAG ++ GE  EEA +RE+ EETG E
Sbjct: 33  LPAGLIDPGEDPEEAARRELEEETGYE 59

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 68  IVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           +   VI ++   +L+ +  +     G W  P GKVE GET+E+A+ RE+ EE G+E
Sbjct: 7   VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIE 62

Length = 312

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 47.6 bits (114), Expect = 6e-08
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 71  AVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           A+I    N     L++Q +     G W  P G VE GE   EA  RE  EETG+ 
Sbjct: 7   AIIYRRLNNEIEYLLLQASY----GHWDFPKGHVEPGEDDLEAALRETEEETGIT 57

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.3 bits (113), Expect = 7e-08
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 91  NGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
              W LP GK+E GET  +A +RE+ EETGL+
Sbjct: 20  GSRWALPGGKIEPGETPLQAARRELQEETGLQ 51

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 71  AVIINSKN-AVLMMQEAKSICN--GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           AV++ S +  +L+ + A S+      W  P G VE GE L EA  RE+ EETGL + P
Sbjct: 5   AVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDP 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 80  VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
           VL+++ +     G W    G +E+GE+  EA +REV EETGL+    TLL   
Sbjct: 17  VLLLRRSDKY-AGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRG 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 97  PAGKVEEGETLEEAVKREVLEETG 120
           P GKVE GET +EA  REV+EETG
Sbjct: 50  PGGKVEPGETSKEAAIREVMEETG 73

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|234699 PRK00241, nudC, NADH pyrophosphatase; Reviewed

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 98  AGKVEEGETLEEAVKREVLEETGLE 122
           AG VE GETLE+ V REV+EE+G++
Sbjct: 162 AGFVEVGETLEQCVAREVMEESGIK 186

Length = 256

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 59  PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           PR+   V  IV   +I     +L          G + L AG VE GETLE+AV REV EE
Sbjct: 141 PRIDPCV--IVA--VIRGDEILLARHPRHF--PGMYSLLAGFVEPGETLEQAVAREVFEE 194

Query: 119 TGLE 122
            G++
Sbjct: 195 VGIK 198

Length = 279

>gnl|CDD|239522 cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 72  VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           ++ N     L+ +       G W++P G++ + ETL EA +R   +E GLE 
Sbjct: 18  IVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEF 69

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus closely related to the regulation of cell wall biosynthesis. Enzymes in this family are believed to regulate the concentration of GDP-mannose and GDP-glucose in the bacterial cell wall. Length = 144

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 71  AVIIN-SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
           A ++N  +  VL+    K    G+W  P G ++  E+L EA  RE+ EETG+E+     L
Sbjct: 7   AFVVNPDRGKVLLTHHRKL---GSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPL 63

Query: 130 AVETA 134
           +V   
Sbjct: 64  SVLVD 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 68  IVMAVIINSKNAVLM--MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
            ++  +I +  A L+  M + + +  G W L  G VE GE +EEA++RE+ EE G ++
Sbjct: 5   TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62

Length = 141

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 92  GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           G   LP G +E GET ++AV RE+LEETG+ + P
Sbjct: 29  GKLALPGGFIELGETWQDAVARELLEETGVAVDP 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 94  WYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
           W+ P G VE GE+ E+A +RE+ EETG+ +A
Sbjct: 30  WFTPGGGVEPGESPEQAARRELREETGITVA 60

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 69  VMAVIINSKNAVLMMQE-AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           V+A II     +L+ Q  A S   G W    GKVE GE+  +A+ RE+ EE G+E     
Sbjct: 6   VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGE 65

Query: 128 LLA 130
            +A
Sbjct: 66  YVA 68

Length = 135

>gnl|CDD|240045 cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 67  YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
               A++  + N VL+   A+ I    ++LP G VE GET E A++RE+ EE G+ ++  
Sbjct: 2   LRARAIVR-AGNKVLL---ARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG 57

Query: 127 TLL-AVE 132
             L A+E
Sbjct: 58  RFLGAIE 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
           AV++ S   VL+++       G W LP G +E+ ETL +A  RE+ EETGL++    L 
Sbjct: 208 AVVVQS-GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLR 265

Length = 340

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 92  GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
           G W LP G  E GET  E V RE+LEE GL +  + +     
Sbjct: 29  GHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRV 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 68  IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
           I + +I N    +++ + A   +       P GK E GET E+AV RE+ EE G+   
Sbjct: 6   IAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQH 63

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Lowering the threshold picks up members of MutT superfamily well [DNA metabolism, DNA replication, recombination, and repair]. Length = 128

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
           V A+I+     +L++    +   G +  P G VE+GE   E + RE+ EETG
Sbjct: 3   VRAIILQGDK-ILLLY---TKRYGDYKFPGGGVEKGEDHIEGLIRELQEETG 50

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 69  VMAVIINSKNA---VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           V  V++ S +    VL+++  K++  G W   AG VE GET  +A  RE+ EETG+
Sbjct: 2   VSGVLLRSLDKETKVLLLKRVKTL-GGFWCHVAGGVEAGETAWQAALRELKEETGI 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 72  VIINSKNA-VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V+I + +  VLM+Q A       W    G +EEGET  +   REV EETG+++    L
Sbjct: 12  VVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQL 67

Length = 148

>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGL 121
           +  G VE GET E A  RE+ EE+GL
Sbjct: 28  IVKGTVEPGETPEAAALRELQEESGL 53

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 92  GAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           GAW +P G+  EGE    A KRE  EETG  
Sbjct: 33  GAWSIPKGEYTEGEDPLLAAKREFSEETGFC 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|226604 COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 92  GAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           GAW +P G+   GE    A +RE  EE G+
Sbjct: 36  GAWSIPKGEYTGGEDPWLAARREFSEEIGI 65

Length = 161

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 71  AVIIN-SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           A+I+N   + VL+++  KS     W  P GK+ + E   +   REV EETG +++ 
Sbjct: 6   AIILNEDLDKVLLVKGWKS--KS-WSFPKGKINKDEDDHDCAIREVYEETGFDISK 58

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 68  IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA-GKVEEGETLEEAVKREVLEETGLEMA 124
           +V   I NSK  +L+ +    K    G W L   G V+ GET   A +REV EE GLE+ 
Sbjct: 2   VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETST-AAEREVKEELGLELD 60

Query: 125 PT 126
            +
Sbjct: 61  FS 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 80  VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           VL++   ++   G W +P G  E+ E+  EA  RE  EE G+ 
Sbjct: 17  VLLVTSRRT---GRWIVPKGGPEKDESPAEAAAREAWEEAGVR 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 98  AGKVEEGETLEEAVKREVLEETGLE 122
           AG +EEGE++E+  +RE +EE GL 
Sbjct: 88  AGMIEEGESVEDVARREAIEEAGLI 112

Length = 202

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 76  SKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
           S + VL+ +    K+   G   +P G +E GE+ EEA+ REV EE G++    T L
Sbjct: 9   SDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYL 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 96  LPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLL 129
            P GKV+ G E       RE  EE GL      +L
Sbjct: 36  FPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVL 70

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|239642 cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 76  SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           S   +L     K   +G W +P G V+ GE +   +KRE  EE
Sbjct: 44  SGKPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEE 86

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer. Length = 186

>gnl|CDD|237966 PRK15434, PRK15434, GDP-mannose mannosyl hydrolase NudD; Provisional

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 55  ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           E F   ++ T    +  ++ NS+   L+ +       G W++P G+V++ ETLE A +R 
Sbjct: 6   EDFATVVRSTPLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 65

Query: 115 VLEETGLEM 123
            + E GL +
Sbjct: 66  TMAELGLRL 74

Length = 159

>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGL 121
            P G ++ GET  EA  RE+ EE G 
Sbjct: 78  FPKGLIDPGETPLEAANRELKEEVGF 103

Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.76
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.75
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.74
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.73
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.73
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.71
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.7
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.7
PLN02325	144	nudix hydrolase	99.7
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.69
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.69
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.68
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.68
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.67
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.67
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.67
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.66
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.66
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.66
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.66
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.66
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.65
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.65
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.65
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.65
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.65
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.63
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.63
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.63
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.63
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.62
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.62
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.62
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.62
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.62
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.61
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.61
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.61
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.61
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.61
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.61
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.61
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.61
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.6
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.6
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.6
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.59
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.59
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.58
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.58
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.57
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.57
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.56
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.56
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.55
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.55
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.55
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.55
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.54
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.54
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.53
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.53
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.53
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.51
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.47
KOG3084|consensus	345		99.47
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.46
PRK10707	190	putative NUDIX hydrolase; Provisional	99.46
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.44
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.43
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.43
PRK08999	312	hypothetical protein; Provisional	99.41
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.4
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.38
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.36
PLN02709	222	nudix hydrolase	99.34
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.29
PLN02791	770	Nudix hydrolase homolog	99.24
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.23
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.21
PLN03143	291	nudix hydrolase; Provisional	99.16
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	99.16
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.15
KOG2839|consensus	145		99.14
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.08
PRK10880	350	adenine DNA glycosylase; Provisional	99.07
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	98.93
PRK13910	289	DNA glycosylase MutY; Provisional	98.91
KOG3041|consensus	225		98.82
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.81
KOG3069|consensus	246		98.8
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.69
KOG0648|consensus	295		98.65
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.19
PLN02839	372	nudix hydrolase	98.16
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.97
KOG2457|consensus	555		97.56
KOG4195|consensus	275		97.55
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	96.62
KOG2937|consensus	348		96.49
KOG0142|consensus	225		96.14
KOG4432|consensus	405		96.03
KOG4313|consensus	306		95.74
COG4112	203	Predicted phosphoesterase (MutT family) [General f	94.9
KOG1689|consensus	221		94.28
KOG4432|consensus	405		89.14
KOG4548|consensus	263		82.88
PF14443	126	DBC1: DBC1	82.17

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=3.3e-18  Score=121.45  Aligned_cols=68  Identities=28%  Similarity=0.475  Sum_probs=59.7

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc--eEEEEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT--TLLAVE  132 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~--~~~~~~  132 (135)
                      ....++++|++.+++|||+||.+.+++|.|.+|||+++.|||+++||+||++||||+++...  +++++.
T Consensus        11 p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~   80 (144)
T cd03430          11 PLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVF   80 (144)
T ss_pred             CeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEE
Confidence            44567888888889999999987677899999999999999999999999999999998876  666654

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=9.2e-18  Score=115.56  Aligned_cols=68  Identities=35%  Similarity=0.516  Sum_probs=59.7

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +..+++++++++++|||++|.+.+.+|.|.+|||++++||++++||+||++||||+++...+++++..
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~   69 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVD   69 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEe
Confidence            35577888888889999999865567999999999999999999999999999999998888877643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.74  E-value=1.2e-17  Score=119.07  Aligned_cols=69  Identities=43%  Similarity=0.582  Sum_probs=60.2

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEeC
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA  134 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~~  134 (135)
                      ....+.+++... ++|||+||.+.++.|.|.+|||+++.|||+++||.||++||||+++...+++++...
T Consensus         9 p~~~v~~~i~~~-~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~   77 (145)
T COG1051           9 PLVAVGALIVRN-GRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDD   77 (145)
T ss_pred             cceeeeEEEEeC-CEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecC
Confidence            444555655555 499999999999999999999999999999999999999999999999999988764

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.73  E-value=2.3e-17  Score=119.31  Aligned_cols=67  Identities=27%  Similarity=0.491  Sum_probs=57.0

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc--ceEEEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP--TTLLAV  131 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~--~~~~~~  131 (135)
                      ...++.++|++++++|||+||.+.+.+|.|+||||+++.|||+++||+||++||||+++..  .+++++
T Consensus        16 ~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~   84 (159)
T PRK15434         16 PLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV   84 (159)
T ss_pred             ceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence            3457788888888999999998766789999999999999999999999999999998743  355554

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3.7e-17  Score=113.22  Aligned_cols=65  Identities=68%  Similarity=1.069  Sum_probs=58.2

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ++++++++.+++|||++|.+.++++.|.+|||+++.||++++||.||++||||+.+...+++++.
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~   66 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVE   66 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEE
Confidence            56778888889999999987667899999999999999999999999999999999888777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.71  E-value=7.3e-17  Score=114.14  Aligned_cols=68  Identities=40%  Similarity=0.607  Sum_probs=58.6

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ...++++++++.++++||++|+..+.++.|+||+|++++||++++||.||++||||+++...++++..
T Consensus        12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~   79 (142)
T cd04700          12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTY   79 (142)
T ss_pred             eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEE
Confidence            45567777888888999999876556799999999999999999999999999999999887776654

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=7.2e-17  Score=111.56  Aligned_cols=64  Identities=36%  Similarity=0.537  Sum_probs=56.6

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++.++++++++++||++|.+.+++|.|.+|||+++.|||+.+||.||++||||+++...++++.
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~   66 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFS   66 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEe
Confidence            4677788888999999998766788999999999999999999999999999999887776654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=8.4e-17  Score=111.19  Aligned_cols=68  Identities=40%  Similarity=0.598  Sum_probs=59.4

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ...+.++++++++++||++|.+.++++.|.+|||++++||++++||.||++||||+++...+.+++..
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~   69 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTN   69 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEe
Confidence            34677888898899999999876668999999999999999999999999999999998877776543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.70  E-value=1.5e-16  Score=113.08  Aligned_cols=68  Identities=38%  Similarity=0.583  Sum_probs=57.7

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ....+.++++++ ++|||+||.+.+..|.|.+|||+++.|||+.+||.||++||||+++...+++++..
T Consensus         8 p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~   75 (144)
T PLN02325          8 PRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTN   75 (144)
T ss_pred             CeEEEEEEEEcC-CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEec
Confidence            344555666664 69999999876667899999999999999999999999999999999988888753

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.69  E-value=1.2e-16  Score=109.51  Aligned_cols=63  Identities=41%  Similarity=0.621  Sum_probs=54.8

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +.++++++ ++|||++|++.+++|.|.+|||++++||++++||.||++||||+.+...+++++.
T Consensus         3 ~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   65 (128)
T cd04684           3 AYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSA   65 (128)
T ss_pred             eEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEE
Confidence            45556665 8999999987667899999999999999999999999999999998887777664

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.6e-16  Score=109.69  Aligned_cols=65  Identities=35%  Similarity=0.587  Sum_probs=56.0

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ..+++++++++++|||++|++. +++.|.+|||++++|||+++||.||++||||+.+....+++..
T Consensus         3 ~~~~~~v~~~~~~vLl~~r~~~-~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~   67 (127)
T cd04670           3 VGVGGLVLNEKNEVLVVQERNK-TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR   67 (127)
T ss_pred             eEEEEEEEcCCCeEEEEEccCC-CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence            4567778888889999988765 6799999999999999999999999999999998776666543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1.9e-16  Score=108.94  Aligned_cols=64  Identities=38%  Similarity=0.606  Sum_probs=54.2

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +++++++++++|||++|.+. ..+.|+||||+++.|||+.+||.||++||||+++...+++++..
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~-~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~   66 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKP-GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVN   66 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecC-CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEe
Confidence            45566677689999998654 25799999999999999999999999999999998777777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.68  E-value=1.5e-16  Score=111.95  Aligned_cols=58  Identities=34%  Similarity=0.607  Sum_probs=49.0

Q ss_pred             EEEEEEEcCCCeEEEEEeec--CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         68 IVMAVIINSKNAVLMMQEAK--SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      .+.+.+++.+++|||+||+.  +.++|.|++|||++++|||+++||.||++||||+.+..
T Consensus         5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~   64 (141)
T PRK15472          5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLL   64 (141)
T ss_pred             eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceee
Confidence            45555556678999999864  34789999999999999999999999999999997643

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=2.3e-16  Score=107.44  Aligned_cols=63  Identities=49%  Similarity=0.688  Sum_probs=53.4

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +.++++++ +++||++|.+..+++.|.||||++++||++++||.||++||||+.+.....++..
T Consensus         3 v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   65 (122)
T cd04673           3 VGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVV   65 (122)
T ss_pred             EEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEE
Confidence            45556654 6999999987667899999999999999999999999999999998776666543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=2.8e-16  Score=108.26  Aligned_cols=62  Identities=45%  Similarity=0.671  Sum_probs=53.5

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +++++++++++++||+||..  ++|.|.+|||++++|||+++||.||++||||+++...+++++
T Consensus         4 ~v~~~i~~~~~~iLL~r~~~--~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   65 (125)
T cd04696           4 TVGALIYAPDGRILLVRTTK--WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV   65 (125)
T ss_pred             EEEEEEECCCCCEEEEEccC--CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEE
Confidence            46677788788999998753  468999999999999999999999999999999887776554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.67  E-value=2.6e-16  Score=111.53  Aligned_cols=57  Identities=39%  Similarity=0.548  Sum_probs=50.7

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM  123 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~  123 (135)
                      .+..+.+++++++++|||+||...  ++.|++|||++++|||+.+||+||++||||+.+
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV   62 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecCC--CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence            455677888888889999988653  589999999999999999999999999999988

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.66  E-value=3.7e-16  Score=110.89  Aligned_cols=64  Identities=34%  Similarity=0.537  Sum_probs=56.2

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +.+++++++++++++||++|.+..  +.|.+|+|++++||++.+||.||++||||+.+...++++.
T Consensus         3 ~~~v~~ii~~~~~~vLL~~r~~~~--~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~   66 (147)
T cd03671           3 RPNVGVVLFNEDGKVFVGRRIDTP--GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAE   66 (147)
T ss_pred             CceEEEEEEeCCCEEEEEEEcCCC--CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEE
Confidence            356778888888999999998754  8999999999999999999999999999999877776664

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=8.7e-16  Score=106.71  Aligned_cols=67  Identities=37%  Similarity=0.446  Sum_probs=55.7

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..+++++++++ +++||++|...+..|.|++|||++++||++++||.||++||||+.+....++++..
T Consensus        13 ~~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~   79 (130)
T cd04511          13 KIIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYS   79 (130)
T ss_pred             cEEEEEEEecC-CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEe
Confidence            34455555554 79999999766667899999999999999999999999999999988777777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=7.1e-16  Score=105.55  Aligned_cols=61  Identities=34%  Similarity=0.541  Sum_probs=49.2

Q ss_pred             EEEEEEcCCCeEEEEEeecC--CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      ++++++++ ++|||+||...  .++|.|+||||++++||++++||.||++||||+++.....++
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~   65 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLC   65 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEE
Confidence            34445554 79999998753  378999999999999999999999999999999865444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.66  E-value=4.6e-16  Score=108.13  Aligned_cols=63  Identities=40%  Similarity=0.586  Sum_probs=52.8

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +++++ ..++++||++|.+. .++.|++|||++++|||+.+||.||++||||+++....++++.+
T Consensus         3 v~~ii-~~~~~vLlv~r~~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   65 (134)
T cd03675           3 VAAVV-ERDGRFLLVEEETD-GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQ   65 (134)
T ss_pred             EEEEE-EECCEEEEEEEccC-CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEE
Confidence            34444 44579999998765 57899999999999999999999999999999998877777643

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=4.6e-16  Score=106.83  Aligned_cols=60  Identities=35%  Similarity=0.604  Sum_probs=49.7

Q ss_pred             EEEEEEEcCCCeEEEEEeecC---CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKS---ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL  128 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~---~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~  128 (135)
                      +++++++++ +++||++|.+.   .++|.|.||||+++.||++++||.||++||||+++....+
T Consensus         3 v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~   65 (122)
T cd04682           3 VALALLIGD-GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI   65 (122)
T ss_pred             eEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc
Confidence            344555555 89999999753   4789999999999999999999999999999999865433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.65  E-value=6.8e-16  Score=107.52  Aligned_cols=63  Identities=38%  Similarity=0.582  Sum_probs=53.9

Q ss_pred             EEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        70 ~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+++.++ +++||++|....+++.|.+|||+++.||++.+||+||++||||+.+...+++++..
T Consensus         5 ~~~i~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~   67 (137)
T cd03427           5 LCFIKDP-DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIK   67 (137)
T ss_pred             EEEEEEC-CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEE
Confidence            3445454 79999999876578999999999999999999999999999999998888777653

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.65  E-value=8e-16  Score=105.61  Aligned_cols=67  Identities=40%  Similarity=0.666  Sum_probs=58.8

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +.++.+++++.++++||+||.+..  .++.|.+|||++++|||+.+||+||+.||||+.+....++++.
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~   70 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLF   70 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceee
Confidence            567888899988899999998764  6799999999999999999999999999999998666666554

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=7.6e-16  Score=106.43  Aligned_cols=64  Identities=39%  Similarity=0.640  Sum_probs=54.4

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ...+.+++++.++++||++|.+.   +.|.||||++++|||+.+||.||++||||+.+....++++.
T Consensus         7 ~~~~~~~v~~~~~~vLL~~r~~~---~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~   70 (132)
T cd04677           7 LVGAGVILLNEQGEVLLQKRSDT---GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVY   70 (132)
T ss_pred             ccceEEEEEeCCCCEEEEEecCC---CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEe
Confidence            34456667788789999988753   78999999999999999999999999999999887777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=5.5e-16  Score=107.19  Aligned_cols=64  Identities=36%  Similarity=0.529  Sum_probs=54.9

Q ss_pred             EEEEEEEEcC--CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINS--KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~--~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +.+.+++++.  ++++||+||.+. ++|.|.+|||+++.||++.+||.||++||||+.+...+++..
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~-~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~   67 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDK-YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDR   67 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCC-CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEee
Confidence            3466777777  889999999876 789999999999999999999999999999998866655543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=6.5e-16  Score=108.54  Aligned_cols=60  Identities=33%  Similarity=0.585  Sum_probs=51.7

Q ss_pred             cEEEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892         66 TYIVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL  128 (135)
Q Consensus        66 ~~~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~  128 (135)
                      +..+++++++++ ++|||++|++   .|.|.+|||++++||++++||.||++||||+++.....
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~   62 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK---LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP   62 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC---CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence            456778888876 8999999875   47899999999999999999999999999998765544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.3e-15  Score=103.93  Aligned_cols=56  Identities=36%  Similarity=0.656  Sum_probs=47.4

Q ss_pred             EEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         69 VMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      +.+++++ +++|||+||.+. .++|.|++|||++++||++.+||.||++||||+.+..
T Consensus         3 v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~   59 (120)
T cd04683           3 VYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDP   59 (120)
T ss_pred             EEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccCh
Confidence            4455555 479999998754 3579999999999999999999999999999998873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.4e-15  Score=103.33  Aligned_cols=62  Identities=40%  Similarity=0.708  Sum_probs=53.6

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc-cceEEEEEe
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA-PTTLLAVET  133 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~-~~~~~~~~~  133 (135)
                      +.++++++++++||+||+..   +.|.+|||++++|||+++||.||++||||+.+. ...++++..
T Consensus         3 ~~~~i~~~~~~vLL~~r~~~---~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~   65 (120)
T cd04680           3 ARAVVTDADGRVLLVRHTYG---PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYY   65 (120)
T ss_pred             eEEEEECCCCeEEEEEECCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEe
Confidence            56778888889999998753   489999999999999999999999999999998 777766643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1e-15  Score=105.64  Aligned_cols=60  Identities=40%  Similarity=0.594  Sum_probs=50.9

Q ss_pred             EEEEEEEcCCCeEEEEEeecC--CCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKS--ICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTTL  128 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~  128 (135)
                      ++.+++++++++|||+||...  .++|.|++| ||++++||++ +||+||++||||+.+....+
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~   64 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSEL   64 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhc
Confidence            466778888899999998743  368999998 8999999999 99999999999999875433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.2e-15  Score=107.72  Aligned_cols=61  Identities=30%  Similarity=0.417  Sum_probs=53.0

Q ss_pred             cEEEEEEEEcCC---CeEEEEEeec--CCCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         66 TYIVMAVIINSK---NAVLMMQEAK--SICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        66 ~~~v~~~i~~~~---~~vLL~~r~~--~~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      |.++.+++++.+   +++||++|+.  ..++|.|++ |||++++|||+++||+||++||||+.+...
T Consensus         2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~   68 (144)
T cd04692           2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSAD   68 (144)
T ss_pred             ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChH
Confidence            567888898877   8999999875  357899998 599999999999999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=2.5e-15  Score=102.11  Aligned_cols=60  Identities=37%  Similarity=0.632  Sum_probs=50.6

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc--ceEEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP--TTLLAV  131 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~--~~~~~~  131 (135)
                      +++++++.++++||+||++   .+.|.||||++++||++++||.||++||||+++..  .+.++.
T Consensus         3 ~~~~v~~~~~~vLl~~r~~---~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~   64 (118)
T cd04690           3 AAALILVRDGRVLLVRKRG---TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGT   64 (118)
T ss_pred             EEEEEEecCCeEEEEEECC---CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEE
Confidence            4556667778999998865   47899999999999999999999999999998877  555544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=1.6e-15  Score=104.93  Aligned_cols=64  Identities=25%  Similarity=0.444  Sum_probs=53.8

Q ss_pred             EEEEEEEcCCCeEEEEEeecC--CCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKS--ICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++.+++++.+++|||++|...  .++|.|++ |||++++||++++||+||++||||+.+.....++.
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~   68 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGL   68 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeE
Confidence            467888899999999988742  36899998 69999999999999999999999998875554443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=1.5e-15  Score=104.20  Aligned_cols=62  Identities=48%  Similarity=0.775  Sum_probs=52.8

Q ss_pred             EEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      +++++++++++++||+||....  ++|.|+||||++++||++.+||.||++||||+++....++
T Consensus         3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~   66 (129)
T cd04699           3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRY   66 (129)
T ss_pred             eEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeee
Confidence            4566677776899999997643  5899999999999999999999999999999988776553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.62  E-value=4.3e-15  Score=101.75  Aligned_cols=64  Identities=36%  Similarity=0.638  Sum_probs=52.8

Q ss_pred             EEEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .+++++.++++++||+||... .++|.|+||||++++||++.+||.||+.||+|+++...+.++.
T Consensus         6 ~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~   70 (129)
T PRK10776          6 IAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEK   70 (129)
T ss_pred             EEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEE
Confidence            345556677789999999764 4789999999999999999999999999999998766555443

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.62  E-value=1.1e-15  Score=110.61  Aligned_cols=66  Identities=24%  Similarity=0.341  Sum_probs=57.4

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeecC--CCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      ..+.++++++++++++|||+||+..  .++|.|.+| ||++++||++++||+||++||||+.+....++
T Consensus        28 ~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~   96 (165)
T cd02885          28 LLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV   96 (165)
T ss_pred             cceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc
Confidence            3488888989999999999999753  478999996 89999999999999999999999998765554

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.61  E-value=3.4e-15  Score=104.09  Aligned_cols=65  Identities=29%  Similarity=0.372  Sum_probs=54.7

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ..+.++++++++++||+++.+.. .++.|.+|||+++.||++++||.||++||||+.+.....++.
T Consensus         3 ~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~   68 (137)
T cd03424           3 DAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGS   68 (137)
T ss_pred             CEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEee
Confidence            45778888988999999876543 467999999999999999999999999999999875555543

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.61  E-value=3.7e-15  Score=103.58  Aligned_cols=60  Identities=35%  Similarity=0.520  Sum_probs=50.6

Q ss_pred             EEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         72 VIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        72 ~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +++.++++|||+||.+ ..++|.|+||||++++||++.+|+.||+.||||+++....+++.
T Consensus         9 ~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~   69 (135)
T PRK10546          9 AIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVAS   69 (135)
T ss_pred             EEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEE
Confidence            3445667999999875 45789999999999999999999999999999999877665543

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.5e-15  Score=101.89  Aligned_cols=62  Identities=39%  Similarity=0.640  Sum_probs=53.0

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ..+.++++++++++||+||...   |.|+||||+++.||++++||.||++||||+.+...+++++
T Consensus         3 ~~v~~ii~~~~~~vLl~~r~~~---~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~   64 (129)
T cd04676           3 PGVTAVVRDDEGRVLLIRRSDN---GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGI   64 (129)
T ss_pred             ceEEEEEECCCCeEEEEEecCC---CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEE
Confidence            3466777788789999998764   8999999999999999999999999999998877666543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.61  E-value=1.5e-15  Score=117.34  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=75.9

Q ss_pred             ccccccccchhhHHHhhCCCcccCCCCCCCCCccccccc-cccCCCCCCccccccCCcccEEEEEEEEcCCCeEEEEEee
Q psy10892          8 IMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADF-APARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEA   86 (135)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vLL~~r~   86 (135)
                      .++..+..+..++.+++....   .+.+|+.|.....-. ....-.++...... .+....++.+++ .+++++||+|+.
T Consensus        77 ~~~~~~~~~~~~a~~l~~w~~---~~~fC~~CG~~~~~~~~~~~~~C~~c~~~~-yp~~~paViv~V-~~~~~iLL~rr~  151 (256)
T PRK00241         77 DLDDGLFQLLGRAVQLAEFYR---SHRFCGYCGHPMHPSKTEWAMLCPHCRERY-YPRIAPCIIVAV-RRGDEILLARHP  151 (256)
T ss_pred             cCCHHHHHHHHHHHHHHHHhh---cCccccccCCCCeecCCceeEECCCCCCEE-CCCCCCEEEEEE-EeCCEEEEEEcc
Confidence            345556666777777775544   456787776543211 11111111111111 111222333444 445799999987


Q ss_pred             cCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         87 KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        87 ~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +.+ +|.|.+|||++++|||+++||.||++||||+++...++++.
T Consensus       152 ~~~-~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s  195 (256)
T PRK00241        152 RHR-NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGS  195 (256)
T ss_pred             CCC-CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEe
Confidence            654 78999999999999999999999999999999988777764

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.61  E-value=2.8e-15  Score=107.75  Aligned_cols=64  Identities=28%  Similarity=0.403  Sum_probs=53.4

Q ss_pred             EEEEEEEcCC--CeEEEEEeecC--CCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSK--NAVLMMQEAKS--ICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~--~~vLL~~r~~~--~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++.+++.+.+  ++|||+||...  .++|.|+||||++++| |++++||.||++||||+++....+++.
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~   72 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGR   72 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEE
Confidence            3555566554  68999999754  3789999999999999 999999999999999999887776654

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.61  E-value=1.6e-15  Score=105.86  Aligned_cols=62  Identities=35%  Similarity=0.581  Sum_probs=53.2

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +.+.+.++++++||++|+..+ +|.|.+|||+++.||++++||.||++||||+++...+.++.
T Consensus         3 v~i~l~~~~~~vLL~~r~~~~-~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~   64 (131)
T cd03429           3 VIVLVIDGGDRILLARQPRFP-PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGS   64 (131)
T ss_pred             EEEEEEeCCCEEEEEEecCCC-CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEee
Confidence            455567777899999987643 78999999999999999999999999999999987776654

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.6e-15  Score=102.48  Aligned_cols=62  Identities=37%  Similarity=0.582  Sum_probs=53.0

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+.++++++ +++||+++++   .+.|.+|||++++|||+++||.||++||||+.+...+++++..
T Consensus         4 ~v~~~i~~~-~~vLL~~~~~---~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~   65 (123)
T cd04672           4 DVRAAIFKD-GKILLVREKS---DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDD   65 (123)
T ss_pred             eEEEEEEEC-CEEEEEEEcC---CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEec
Confidence            455666666 7999998876   5899999999999999999999999999999987777777653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=4e-15  Score=102.84  Aligned_cols=63  Identities=37%  Similarity=0.536  Sum_probs=51.7

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .+.+++++ +++|||++|.+. .++.|.+|||+++.|||+++||.||+.||||+.+...+++.+.
T Consensus         3 ~a~~iv~~-~~~vLl~~r~~~-~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~   65 (128)
T cd04687           3 SAKAVIIK-NDKILLIKHHDD-GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVR   65 (128)
T ss_pred             EEEEEEEE-CCEEEEEEEEcC-CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEE
Confidence            34555555 579999998643 3578999999999999999999999999999999877766654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.60  E-value=2.1e-15  Score=103.68  Aligned_cols=61  Identities=36%  Similarity=0.541  Sum_probs=51.3

Q ss_pred             EEEEEEEcCC---CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSK---NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~---~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++++++++.+   ++|||++|.+.   +.|.||||++++|||+++||.||++||||+.+.....++.
T Consensus         3 ~a~~ii~~~~~~~~~vLl~~~~~~---~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~   66 (131)
T cd03673           3 AAGGVVFRGSDGGIEVLLIHRPRG---DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT   66 (131)
T ss_pred             eEEEEEEEccCCCeEEEEEEcCCC---CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEE
Confidence            4556666654   79999998753   7999999999999999999999999999999887765554

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.60  E-value=5.2e-15  Score=106.37  Aligned_cols=65  Identities=29%  Similarity=0.461  Sum_probs=56.7

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .+..+++++++++++|||+||...  ++.|++|+|++++||++++||.||++||||+.+...++++.
T Consensus         7 ~~~~v~~~i~~~~g~vLL~~r~~~--~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~   71 (156)
T PRK00714          7 YRPNVGIILLNRQGQVFWGRRIGQ--GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAE   71 (156)
T ss_pred             CCCeEEEEEEecCCEEEEEEEcCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEE
Confidence            455678889998899999998753  48999999999999999999999999999999877776664

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=7.2e-15  Score=104.49  Aligned_cols=65  Identities=38%  Similarity=0.559  Sum_probs=55.4

Q ss_pred             EEEEEEEEcCCCeEEEEEeecC--CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc----eEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT----TLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~----~~~~~  131 (135)
                      .++++++++.++++||+||...  .++|.|.+|||++++||++++||+||++||+|+.+...    +++++
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~   72 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGL   72 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEee
Confidence            3567777888899999999753  57899999999999999999999999999999988753    45554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=7e-15  Score=101.14  Aligned_cols=61  Identities=33%  Similarity=0.520  Sum_probs=51.2

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .+.+++++ ++++||+++..   .+.|.+|||++++||++.+||.||++||||+++...+++++.
T Consensus         3 ~~~~vi~~-~~~vLlv~~~~---~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~   63 (125)
T cd04689           3 RARAIVRA-GNKVLLARVIG---QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAI   63 (125)
T ss_pred             EEEEEEEe-CCEEEEEEecC---CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEE
Confidence            35555554 57999999864   468999999999999999999999999999999888777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>TIGR00586 mutt mutator mutT protein

Probab=99.59  E-value=1.4e-14  Score=99.45  Aligned_cols=65  Identities=29%  Similarity=0.423  Sum_probs=53.7

Q ss_pred             EEEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .+++++++++++++||+||.. +.++|.|+||||+++.||++++++.||+.||+|+.+...+.++.
T Consensus         5 ~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~   70 (128)
T TIGR00586         5 QIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKL   70 (128)
T ss_pred             EEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE
Confidence            345555667778999999975 45889999999999999999999999999999998776655443

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.58  E-value=4.1e-15  Score=105.85  Aligned_cols=55  Identities=35%  Similarity=0.636  Sum_probs=46.8

Q ss_pred             EEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         68 IVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        68 ~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ++++++++++ ++|||+|+...   +.|+||||++++|||+.+||.||++||||+.+..
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~~---~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~   58 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWKS---KSWSFPKGKINKDEDDHDCAIREVYEETGFDISK   58 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecCC---CCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence            4566677754 69999998643   4899999999999999999999999999998765

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.58  E-value=1e-14  Score=107.19  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=55.2

Q ss_pred             CcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         63 KTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      .-.+.++.+++++++++|||++|...  .++|.|. +|||++++|||+++||.|||+||||+.+.....++
T Consensus        34 ~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~  104 (180)
T PRK15393         34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHG  104 (180)
T ss_pred             CCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceece
Confidence            34667778888898899999988642  3577775 89999999999999999999999999866544433

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=1.6e-14  Score=99.49  Aligned_cols=59  Identities=37%  Similarity=0.529  Sum_probs=49.1

Q ss_pred             EEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        70 ~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .++++++ ++|||+|+.+   .+.|.+|||++++||++.+||.||++||||+.+....++++.
T Consensus         5 ~~vi~~~-~~vLl~~~~~---~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~   63 (126)
T cd04688           5 AAIIIHN-GKLLVQKNPD---ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVV   63 (126)
T ss_pred             EEEEEEC-CEEEEEEeCC---CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEE
Confidence            3334443 4999998765   579999999999999999999999999999998887777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=1.3e-14  Score=100.33  Aligned_cols=62  Identities=27%  Similarity=0.389  Sum_probs=50.6

Q ss_pred             EEEEEEcC---CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc-eEEEEEe
Q psy10892         69 VMAVIINS---KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT-TLLAVET  133 (135)
Q Consensus        69 v~~~i~~~---~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~-~~~~~~~  133 (135)
                      +++++++.   ..++||+++.+.   +.|.+|||+++.|||+.+||+||++||||+.+... +.+++..
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~~---~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~   68 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRRT---GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFE   68 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecCC---CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEE
Confidence            44455443   268999988653   88999999999999999999999999999998777 7777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.56  E-value=1.2e-14  Score=107.06  Aligned_cols=64  Identities=25%  Similarity=0.448  Sum_probs=55.3

Q ss_pred             CCcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         62 KKTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        62 ~~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ....+.++.+++++++++|||+||+.  ..++|.|.+| ||++++||++++||+||++||||+++..
T Consensus        30 ~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~   96 (184)
T PRK03759         30 DTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITD   96 (184)
T ss_pred             CCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence            34578888898999889999999864  3478999976 8999999999999999999999998864

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.56  E-value=2.4e-14  Score=96.81  Aligned_cols=63  Identities=43%  Similarity=0.665  Sum_probs=53.0

Q ss_pred             EEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +.++++++++++||++|+... ++|.|.||+|+++.+|+++++|.||+.||+|+++...+.++.
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~   67 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLAT   67 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEE
Confidence            445566777899999987544 799999999999999999999999999999998876555544

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2.2e-14  Score=97.06  Aligned_cols=57  Identities=39%  Similarity=0.567  Sum_probs=47.8

Q ss_pred             EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++|...++++||++|.+    |.|.+|||++++||++.+||.||++||||+.+.....++.
T Consensus         4 ~~i~~~~~~vLlv~r~~----~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~   60 (112)
T cd04667           4 TVICRRGGRVLLVRKSG----SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFH   60 (112)
T ss_pred             EEEEecCCEEEEEEcCC----CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEE
Confidence            44445567999999864    7899999999999999999999999999998876655543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=1.6e-14  Score=100.46  Aligned_cols=52  Identities=37%  Similarity=0.591  Sum_probs=46.0

Q ss_pred             EcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        74 ~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      .+.++++||++|... ++|.|.+|||++++|||+.+||.||++||||+++...
T Consensus        10 ~~~~~~vLl~~r~~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   61 (131)
T cd04695          10 LDKETKVLLLKRVKT-LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL   61 (131)
T ss_pred             cCCCCEEEEEEecCC-CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccc
Confidence            356679999999865 6799999999999999999999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.55  E-value=4.8e-14  Score=103.87  Aligned_cols=65  Identities=31%  Similarity=0.368  Sum_probs=53.8

Q ss_pred             EEEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ++.++.+++++++||+++... .....|+||+|.+|+||++++||+||++||||+.+...+.++..
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~  114 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKEL  114 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence            345555666778999998654 35678999999999999999999999999999999888777654

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=3.2e-14  Score=99.18  Aligned_cols=60  Identities=30%  Similarity=0.479  Sum_probs=48.4

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc-ccceEEEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM-APTTLLAVE  132 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~-~~~~~~~~~  132 (135)
                      +.++++++ ++|||+++.+   .+.|.||||++++||++.+||.||++||||+.+ .....+++.
T Consensus         3 ~~~ii~~~-~~vLLv~~~~---~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~   63 (131)
T cd04686           3 VRAIILQG-DKILLLYTKR---YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTY   63 (131)
T ss_pred             EEEEEEEC-CEEEEEEEcC---CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEE
Confidence            45556654 7999999865   257999999999999999999999999999987 445555543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.54  E-value=3.3e-14  Score=113.84  Aligned_cols=62  Identities=37%  Similarity=0.562  Sum_probs=52.1

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      ..+.++++. +++|||++|.+.+++|.|.+|||++++||++++||.||++||||+++....+.
T Consensus       204 vtv~avv~~-~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~  265 (340)
T PRK05379        204 VTVDAVVVQ-SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLR  265 (340)
T ss_pred             eEEEEEEEE-CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccc
Confidence            455555554 56999999987777899999999999999999999999999999987655443

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=6.3e-14  Score=96.79  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=44.9

Q ss_pred             EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      +++...+ ++||++|...++.|.|+||||++++||++++||.||++||+|+.+...
T Consensus         9 ~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~   63 (118)
T cd04674           9 ALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPA   63 (118)
T ss_pred             EEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccccc
Confidence            3343443 577777776666899999999999999999999999999999988643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=5.6e-14  Score=98.65  Aligned_cols=62  Identities=29%  Similarity=0.527  Sum_probs=53.0

Q ss_pred             EEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc-ccceEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM-APTTLL  129 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~-~~~~~~  129 (135)
                      .+.+++++.+++|||+++.+..  +++.|.+|||+++.||++.+||.||++||||+.+ ....++
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~   66 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV   66 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceE
Confidence            4678888989999999987643  6789999999999999999999999999999988 444444

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.53  E-value=1.4e-14  Score=99.91  Aligned_cols=58  Identities=36%  Similarity=0.505  Sum_probs=48.2

Q ss_pred             EEEEEEEcCCC---eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         68 IVMAVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        68 ~v~~~i~~~~~---~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      .+++++++.++   ++||+||++    +.|.+|||++++|||+.+||.||++||||+.+....++
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~~----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   64 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQASY----GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIV   64 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEccC----CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhh
Confidence            34555555433   799998875    78999999999999999999999999999998876654

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.53  E-value=2.8e-14  Score=102.72  Aligned_cols=65  Identities=22%  Similarity=0.301  Sum_probs=55.9

Q ss_pred             cCCcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccce
Q psy10892         61 LKKTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTT  127 (135)
Q Consensus        61 ~~~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~  127 (135)
                      .....|.++++++++.+++|||+||+..  .++|.|++| ||+++.||  .+||+||++||||+.+...+
T Consensus        22 ~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~   89 (158)
T TIGR02150        22 QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVP   89 (158)
T ss_pred             cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccc
Confidence            3466888899999999999999998753  479999987 79999999  49999999999999887654

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=8e-14  Score=93.38  Aligned_cols=63  Identities=52%  Similarity=0.731  Sum_probs=53.3

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++++++++.++++||++|... ++|.|.+|+|+++.||++.++|.||+.||+|+.+......++
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~-~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~   64 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGV   64 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC-CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEE
Confidence            356677787789999999876 789999999999999999999999999999998865444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.47  E-value=1.1e-13  Score=96.75  Aligned_cols=49  Identities=35%  Similarity=0.597  Sum_probs=42.4

Q ss_pred             CCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         76 SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        76 ~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ++.++||+|+.++ ..|.|.||+|++++|||+.+||.||++||||+.+..
T Consensus        11 ~~~~~Llvk~~~~-~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~   59 (132)
T cd04661          11 DDTLVLLVQQKVG-SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA   59 (132)
T ss_pred             cCcEEEEEEeecC-CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE
Confidence            3458999998753 268999999999999999999999999999997654

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>KOG3084|consensus

Probab=99.47  E-value=1.3e-13  Score=107.94  Aligned_cols=65  Identities=32%  Similarity=0.532  Sum_probs=50.4

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      ...+|..++++++++.+|..|..+..+|.|..++|++|+|||+++|++||++||+|++++.+.+.
T Consensus       186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~  250 (345)
T KOG3084|consen  186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV  250 (345)
T ss_pred             CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeee
Confidence            33445555667666544444444445789999999999999999999999999999999887754

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.46  E-value=4.1e-13  Score=92.64  Aligned_cols=58  Identities=38%  Similarity=0.682  Sum_probs=48.8

Q ss_pred             EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +++++ ++++||+++.    .+.|++|||+++.||++++||.||++||+|+.+...+.++...
T Consensus         5 vi~~~-~~~vLl~~~~----~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~   62 (118)
T cd04665           5 VICFY-DDGLLLVRHK----DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQ   62 (118)
T ss_pred             EEEEE-CCEEEEEEeC----CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEE
Confidence            44444 4699999876    3579999999999999999999999999999998888777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.46  E-value=4e-13  Score=99.71  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=48.2

Q ss_pred             cCCCeEEEEEeecC--CCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         75 NSKNAVLMMQEAKS--ICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        75 ~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +.++.+||+||+..  .+.|.|+||||++|++ |++++||+||++||||+.....++++..
T Consensus        41 ~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l  101 (190)
T PRK10707         41 RPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVL  101 (190)
T ss_pred             CCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEe
Confidence            34468999998743  3679999999999985 6899999999999999999888777653

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=4.6e-13  Score=98.03  Aligned_cols=65  Identities=26%  Similarity=0.258  Sum_probs=53.4

Q ss_pred             CCcccEEEEEE--EEcCC--CeEEEEEeec--CCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         62 KKTVTYIVMAV--IINSK--NAVLMMQEAK--SICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        62 ~~~~~~~v~~~--i~~~~--~~vLL~~r~~--~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      ..-.+.++.++  +.+.+  ++++++||+.  ..+||.|. +|+|++++||++.+||+||++||||+++...
T Consensus        28 ~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~   99 (180)
T cd03676          28 FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLV   99 (180)
T ss_pred             CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            45567777754  55665  7999999974  45899995 9999999999999999999999999987753

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.43  E-value=8.6e-13  Score=92.03  Aligned_cols=47  Identities=38%  Similarity=0.523  Sum_probs=40.7

Q ss_pred             CeEEEEEeecC----CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892         78 NAVLMMQEAKS----ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA  124 (135)
Q Consensus        78 ~~vLL~~r~~~----~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~  124 (135)
                      .+|||++|...    ...+.|++|||+++.||++.+||+||++||||+++.
T Consensus        15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662          15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            47999987432    346899999999999999999999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.43  E-value=4e-13  Score=104.17  Aligned_cols=118  Identities=20%  Similarity=0.228  Sum_probs=76.3

Q ss_pred             cccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCCCccccccCCcccEEEEEEEEcCCCeEEEEEeecC
Q psy10892          9 MANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKS   88 (135)
Q Consensus         9 ~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vLL~~r~~~   88 (135)
                      |+....++-++..+++.....   +.+|+.|.....-..-.....-+.......+.+..++.+++++.+ ++||.++.+.
T Consensus        90 ~~~~~~~~~~~a~~l~~w~~~---~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~h  165 (279)
T COG2816          90 LDEGLFGLAARAVQLLEWYRS---HRFCGRCGTKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPRH  165 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHhh---CcCCCCCCCcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCCC
Confidence            445555666667777665443   457777755433222211111111111112223334445555554 5888887765


Q ss_pred             CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         89 ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        89 ~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      . +|.|++-+|+|++|||+++|+.||++||+|+.++.+++++.
T Consensus       166 ~-~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~S  207 (279)
T COG2816         166 F-PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGS  207 (279)
T ss_pred             C-CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEec
Confidence            5 89999999999999999999999999999999999988864

>PRK08999 hypothetical protein; Provisional

Probab=99.41  E-value=1.1e-12  Score=103.19  Aligned_cols=65  Identities=34%  Similarity=0.592  Sum_probs=53.8

Q ss_pred             cEEEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      ...++++++++++++||+||.. ..|+|.|+||+|++++||++.+|+.||++||+|+.+.....++
T Consensus         5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~   70 (312)
T PRK08999          5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLI   70 (312)
T ss_pred             eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEE
Confidence            4455566677778999999864 5689999999999999999999999999999999876554443

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.40  E-value=7.7e-13  Score=97.79  Aligned_cols=64  Identities=25%  Similarity=0.390  Sum_probs=50.9

Q ss_pred             EEEEEEEc-CCCeEEEEEeecCC------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIIN-SKNAVLMMQEAKSI------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~-~~~~vLL~~r~~~~------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++++++++ +++++||+++.+.+      .+..|++|+|++++||++++||+||++||||+.+...+.++.
T Consensus        46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~  116 (185)
T TIGR00052        46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLS  116 (185)
T ss_pred             eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEE
Confidence            45555555 45799999876532      256899999999999999999999999999999987665543

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.38  E-value=2.6e-12  Score=92.65  Aligned_cols=59  Identities=31%  Similarity=0.414  Sum_probs=48.0

Q ss_pred             EEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        70 ~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .++...+ +++||+++..    ..|++|||++++||++++||.||++||||+.+...+.++...
T Consensus        28 ~ii~~~~-~~~LL~~~~~----~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~   86 (156)
T TIGR02705        28 LVIPRYK-DQWLLTEHKR----RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYE   86 (156)
T ss_pred             EEEEEEC-CEEEEEEEcC----CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEE
Confidence            3333444 4888888764    349999999999999999999999999999998888877653

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.36  E-value=4.7e-12  Score=94.84  Aligned_cols=63  Identities=24%  Similarity=0.436  Sum_probs=50.2

Q ss_pred             EEEEEEEcC-CCeEEEEEeecCCC------CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         68 IVMAVIINS-KNAVLMMQEAKSIC------NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        68 ~v~~~i~~~-~~~vLL~~r~~~~~------~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      +++++.+++ +++|+|++..+.+-      +-.|++|+|.+|+||++++||.|||.||||+.+...+.++
T Consensus        51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~  120 (202)
T PRK10729         51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVL  120 (202)
T ss_pred             eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEE
Confidence            455555654 47999998866442      2489999999999999999999999999999987765554

>PLN02709 nudix hydrolase

Probab=99.34  E-value=4e-12  Score=96.29  Aligned_cols=55  Identities=27%  Similarity=0.353  Sum_probs=48.4

Q ss_pred             CeEEEEEeecC--CCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         78 NAVLMMQEAKS--ICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        78 ~~vLL~~r~~~--~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .+|||++|+..  .++|.|+||||++|++ +++.+||+||+.||+|+.....+++|..
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L  108 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVL  108 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeec
Confidence            48999999864  5799999999999996 5799999999999999998888888754

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.29  E-value=1.4e-11  Score=84.04  Aligned_cols=52  Identities=48%  Similarity=0.686  Sum_probs=43.6

Q ss_pred             CeEEEEEeecCCCCCeEEeeeEecCCCCCHHH-HHHHHHHHHHCCccc--cceEEEE
Q psy10892         78 NAVLMMQEAKSICNGAWYLPAGKVEEGETLEE-AVKREVLEETGLEMA--PTTLLAV  131 (135)
Q Consensus        78 ~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~-aa~REl~EE~Gl~~~--~~~~~~~  131 (135)
                      .++|+.+|....  +.|.||||++++||++.+ ||.||++||||+.+.  ....++.
T Consensus        24 ~~vl~~~~~~~~--~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~   78 (161)
T COG0494          24 GEVLLAQRRDDG--GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGE   78 (161)
T ss_pred             CEEeEEEccccC--CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeee
Confidence            689888887643  699999999999998888 999999999999888  4444443

>PLN02791 Nudix hydrolase homolog

Probab=99.24  E-value=3.1e-11  Score=104.84  Aligned_cols=66  Identities=23%  Similarity=0.356  Sum_probs=57.1

Q ss_pred             cCCcccEEEEEEEEcC-CCeEEEEEeec--CCCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         61 LKKTVTYIVMAVIINS-KNAVLMMQEAK--SICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        61 ~~~~~~~~v~~~i~~~-~~~vLL~~r~~--~~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      .....|.++.+++++. ++++||+||+.  ..+||.|.+ ||||++.||+..+||+||+.||+|+.+...
T Consensus        27 ~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~   96 (770)
T PLN02791         27 RDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKD   96 (770)
T ss_pred             cCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChh
Confidence            3456888999999996 68999999974  458999997 799999999999999999999999986543

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.23  E-value=2.9e-11  Score=84.42  Aligned_cols=51  Identities=33%  Similarity=0.466  Sum_probs=40.1

Q ss_pred             EEEEEEcCCC--eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892         69 VMAVIINSKN--AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM  123 (135)
Q Consensus        69 v~~~i~~~~~--~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~  123 (135)
                      +.+++...++  ++++.+...    +.|++|||++++||++.+||.||++||||+.+
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~~----~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHPL----AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcCC----CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            3444554443  666665543    45999999999999999999999999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.21  E-value=8e-11  Score=87.49  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=48.9

Q ss_pred             EEEEEEEcC-CCeEEEEEeecCC-------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIINS-KNAVLMMQEAKSI-------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~~-~~~vLL~~r~~~~-------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ++++++.+. +++++|+++.+.+       .+-.|++|+|.+|+| ++++||+||+.||||+.+...+.++.
T Consensus        47 ~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~  117 (191)
T PRK15009         47 GATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFE  117 (191)
T ss_pred             EEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeE
Confidence            345555554 6799999987654       234799999999976 69999999999999999887665543

>PLN03143 nudix hydrolase; Provisional

Probab=99.16  E-value=1.5e-10  Score=90.93  Aligned_cols=53  Identities=21%  Similarity=0.334  Sum_probs=42.2

Q ss_pred             eEEEEEeecCC-CCCeEEeeeEecCC-CCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         79 AVLMMQEAKSI-CNGAWYLPAGKVEE-GETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        79 ~vLL~~r~~~~-~~g~w~~PgG~i~~-gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +++|+++.+.+ ..-.|+||+|.+|+ +|++++||.||++||||+.+...+++.+
T Consensus       144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L  198 (291)
T PLN03143        144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDL  198 (291)
T ss_pred             EEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEe
Confidence            38888887643 34589999999998 4899999999999999998765444433

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=99.16  E-value=4.2e-11  Score=93.53  Aligned_cols=99  Identities=13%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             CccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCCC
Q psy10892          1 MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSKN   78 (135)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~~   78 (135)
                      ||.+++.+++.+++...+++.+.||...|.+..|.|.-|+....|.+...+...  |...++..........+++.+.++
T Consensus       160 l~~~~~~~lp~~~~~~~n~alm~lG~~vC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  239 (275)
T TIGR01084       160 LWTLAESLLPKADPEAFNQALMDLGAMICTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDG  239 (275)
T ss_pred             HHHHHHHHCChhhHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCC
Confidence            466788999999999999999999999999999999999999999998887554  333333333333344444556678


Q ss_pred             eEEEEEeec-CCCCCeEEeeeE
Q psy10892         79 AVLMMQEAK-SICNGAWYLPAG   99 (135)
Q Consensus        79 ~vLL~~r~~-~~~~g~w~~PgG   99 (135)
                      ++||.||.. +.++|+|+||..
T Consensus       240 ~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       240 EVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             eEEEEeCCCCchhhccccCCCC
Confidence            999999865 568999999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.15  E-value=2.1e-10  Score=88.27  Aligned_cols=64  Identities=20%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             CCcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCCCC-----------------HHHHHHHHHHHHHCC
Q psy10892         62 KKTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEGET-----------------LEEAVKREVLEETGL  121 (135)
Q Consensus        62 ~~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~gEs-----------------~~~aa~REl~EE~Gl  121 (135)
                      ..-.|+++.++|++.++++||+||+.  ..+||.|... +|++..||+                 ..+||+||++||+|+
T Consensus        52 ~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI  131 (247)
T PLN02552         52 RGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI  131 (247)
T ss_pred             CCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence            45688999999999999999999974  4489999855 566665532                 678999999999999


Q ss_pred             cccc
Q psy10892        122 EMAP  125 (135)
Q Consensus       122 ~~~~  125 (135)
                      .+..
T Consensus       132 ~~~~  135 (247)
T PLN02552        132 PAED  135 (247)
T ss_pred             Cccc
Confidence            8553

>KOG2839|consensus

Probab=99.14  E-value=1.4e-10  Score=81.85  Aligned_cols=65  Identities=29%  Similarity=0.447  Sum_probs=52.5

Q ss_pred             cccEEEEEEEEcCCC---eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         64 TVTYIVMAVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~---~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      ..+.+++|+.+..+.   +|||+.-+++  +..|.+|+|++++||+..+||.||+.||.|+.-...++++
T Consensus         7 G~r~vagCi~~r~~~~~ieVLlvsSs~~--~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~   74 (145)
T KOG2839|consen    7 GFRLVAGCICYRSDKEKIEVLLVSSSKK--PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLG   74 (145)
T ss_pred             CcEEEEEeeeeeecCcceEEEEEecCCC--CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeecccc
Confidence            455667777665433   8999987764  4679999999999999999999999999999887776444

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.08  E-value=3.2e-10  Score=83.98  Aligned_cols=42  Identities=29%  Similarity=0.586  Sum_probs=37.6

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM  123 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~  123 (135)
                      ++|+++|+.   .|.|.+|||++++||++.+||.||++||||+.+
T Consensus        50 ~vLl~~r~~---~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          50 QFVAIKRPD---SGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             EEEEEEeCC---CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            788888865   589999999999999999999999999997653

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PRK10880 adenine DNA glycosylase; Provisional

Probab=99.07  E-value=1.3e-10  Score=93.53  Aligned_cols=114  Identities=13%  Similarity=0.179  Sum_probs=83.4

Q ss_pred             CccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCCC
Q psy10892          1 MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSKN   78 (135)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~~   78 (135)
                      ||.+++.+++.......+++.+.+|...|.+..|.|..|+....|.+...+...  |...++....... ..++++.+++
T Consensus       164 l~~~~~~l~p~~~~~~~nqalm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~-~~~~~~~~~~  242 (350)
T PRK10880        164 LWQLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERT-GYFLLLQHGD  242 (350)
T ss_pred             HHHHHHHhCChhHHHHHHHHHHHhhHHhccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEE-EEEEEEEECC
Confidence            366778888989999999999999999999999999999999999999888654  3333333333333 3334445567


Q ss_pred             eEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCc
Q psy10892         79 AVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE  122 (135)
Q Consensus        79 ~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~  122 (135)
                      ++||.||.. +.|+|+|+||..  +..+     ..++..|+.|+.
T Consensus       243 ~~~l~~r~~~gl~~gl~~fP~~--~~~~-----~~~~~~~~~~~~  280 (350)
T PRK10880        243 EVWLEQRPPSGLWGGLFCFPQF--ADEE-----ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEECCccChhhccccCCCC--cchh-----hHHHHHHhcCCc
Confidence            999999974 569999999963  2111     234555677764

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=98.93  E-value=3.9e-10  Score=89.82  Aligned_cols=102  Identities=14%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             Ccccccc-ccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCC
Q psy10892          1 MYRYSKN-IMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSK   77 (135)
Q Consensus         1 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~   77 (135)
                      ||.++++ |.++.++.-.+|..|-||+..|+..+|.|..|+...+|.+...+...  +...++.... ....+.++.+.+
T Consensus       168 ~~~~~~~ll~p~~~~~~fnqammdlGA~ICt~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~-~~~~~~~~~~~~  246 (342)
T COG1194         168 LWELAEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLP-RRFAAFLILNRD  246 (342)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHhhhHhhcCCCCCCCcCcchHHHHHHHcCCcccCCCcCcccccc-hheeeEEEEccC
Confidence            4778888 44555589999999999999999999999999999999999999875  4555555555 666777788888


Q ss_pred             CeEEEEEeec-CCCCCeEEeeeEecCC
Q psy10892         78 NAVLMMQEAK-SICNGAWYLPAGKVEE  103 (135)
Q Consensus        78 ~~vLL~~r~~-~~~~g~w~~PgG~i~~  103 (135)
                      +.++|.+|.. +.++|.|+||....+.
T Consensus       247 ~~~~l~kr~~~gl~~gl~~fP~~e~~~  273 (342)
T COG1194         247 GEVLLEKRPEKGLLGGLWCFPQFEDEA  273 (342)
T ss_pred             cchhhhhCcccCceecccccccccccc
Confidence            8999999874 5689999999876654

>PRK13910 DNA glycosylase MutY; Provisional

Probab=98.91  E-value=1.1e-09  Score=86.03  Aligned_cols=94  Identities=9%  Similarity=0.076  Sum_probs=71.1

Q ss_pred             ccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCCCccccccCCcccEEEEEEEEcCCCeEE
Q psy10892          2 YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVL   81 (135)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vL   81 (135)
                      |.+.+.+++.......+++.+.+|...|.+ .|.|..|+....|.+...+.+.+. +++..........++++ .++++|
T Consensus       124 ~~~~~~~l~~~~~~~~nqaLm~~Ga~iC~~-~P~C~~CPl~~~C~~~~~~~~~~~-~~kk~~~~~~~~~~~~~-~~~~~l  200 (289)
T PRK13910        124 QIKANDFLNLNESFNHNQALIDLGALICSP-KPKCAICPLNPYCLGKNNPEKHTL-KKKQEIVQEERYLGVVI-QNNQIA  200 (289)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHhHHHcCC-CCCCCCCcChhhhhhhhcCCcccc-CCCCCCCceEEEEEEEE-ECCEEE
Confidence            345566777777888999999999999999 699999999999999999888754 22222222333333444 456999


Q ss_pred             EEEeecCCCCCeEEeee
Q psy10892         82 MMQEAKSICNGAWYLPA   98 (135)
Q Consensus        82 L~~r~~~~~~g~w~~Pg   98 (135)
                      |.||..+.|+|+|+||.
T Consensus       201 l~kr~~~l~~gl~~fP~  217 (289)
T PRK13910        201 LEKIEQKLYLGMHHFPN  217 (289)
T ss_pred             EEECCCchhcccccCCC
Confidence            99987667999999996

>KOG3041|consensus

Probab=98.82  E-value=1.2e-08  Score=75.52  Aligned_cols=46  Identities=30%  Similarity=0.458  Sum_probs=39.8

Q ss_pred             CeEEEEEeecCCC-CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892         78 NAVLMMQEAKSIC-NGAWYLPAGKVEEGETLEEAVKREVLEETGLEM  123 (135)
Q Consensus        78 ~~vLL~~r~~~~~-~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~  123 (135)
                      ..++|++..+.+- +-..++|+|-||.||+++.||+|||+||||+.-
T Consensus        88 ~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~g  134 (225)
T KOG3041|consen   88 PYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKG  134 (225)
T ss_pred             EEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccc
Confidence            4788888877663 447889999999999999999999999999863

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.81  E-value=5e-09  Score=76.24  Aligned_cols=66  Identities=21%  Similarity=0.334  Sum_probs=58.5

Q ss_pred             ccCCc-ccEEEEEEEEcCCCeEEEEEee--cCCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         60 RLKKT-VTYIVMAVIINSKNAVLMMQEA--KSICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        60 ~~~~~-~~~~v~~~i~~~~~~vLL~~r~--~~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ..... .|++..++++|.+|++||+||+  +..|++.|. ..+||.-+||+..+|++|.+.+|+|+++..
T Consensus        26 t~d~~~LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~   95 (185)
T COG1443          26 TGDTPRLHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQ   95 (185)
T ss_pred             ccccHHHHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcc
Confidence            34444 6899999999999999999997  466999999 778999999999999999999999998873

>KOG3069|consensus

Probab=98.80  E-value=7.8e-09  Score=78.35  Aligned_cols=54  Identities=22%  Similarity=0.348  Sum_probs=45.3

Q ss_pred             CeEEEEEeec--CCCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         78 NAVLMMQEAK--SICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        78 ~~vLL~~r~~--~~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .+|||.||+.  ..++|.-+||||+.|+. ++-..+|.||..||+|++....+++|.
T Consensus        58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~  114 (246)
T KOG3069|consen   58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGA  114 (246)
T ss_pred             eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhh
Confidence            5899999985  45899999999999985 577889999999999998876665553

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.69  E-value=1.1e-07  Score=63.70  Aligned_cols=51  Identities=24%  Similarity=0.369  Sum_probs=42.1

Q ss_pred             EEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHC
Q psy10892         69 VMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETG  120 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~G  120 (135)
                      +++++ .+++++||.||.. +.|+|+|+||+|.++.+++.+++..+++.++.+
T Consensus         6 ~~~ii-~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~   57 (118)
T cd03431           6 AVVVI-RNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR   57 (118)
T ss_pred             EEEEE-ecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence            33444 4467999999964 569999999999999999999999999988876

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648|consensus

Probab=98.65  E-value=3e-08  Score=77.62  Aligned_cols=65  Identities=40%  Similarity=0.597  Sum_probs=53.8

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      ....++.+++|.+++||+++..+..  ..|.|-+|+|.|+++|++.++|.||++||||++....+++
T Consensus       114 h~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVl  180 (295)
T KOG0648|consen  114 HRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVL  180 (295)
T ss_pred             hheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHH
Confidence            4456778888988899999875433  5789999999999999999999999999999866554443

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.19  E-value=2.9e-06  Score=59.15  Aligned_cols=46  Identities=33%  Similarity=0.565  Sum_probs=39.3

Q ss_pred             eEEEEEeecCCC----CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892         79 AVLMMQEAKSIC----NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA  124 (135)
Q Consensus        79 ~vLL~~r~~~~~----~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~  124 (135)
                      .|||++...+.|    .|.|++|.|....||++..||+||..||+|+.+.
T Consensus        19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd   68 (161)
T COG4119          19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD   68 (161)
T ss_pred             EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence            677777654443    4799999999999999999999999999999774

>PLN02839 nudix hydrolase

Probab=98.16  E-value=6.2e-06  Score=66.66  Aligned_cols=49  Identities=27%  Similarity=0.338  Sum_probs=42.4

Q ss_pred             CCCeEEEEEee--cCCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892         76 SKNAVLMMQEA--KSICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMA  124 (135)
Q Consensus        76 ~~~~vLL~~r~--~~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~  124 (135)
                      .+.++++.||+  +..++|.|. +.+|.+..||++.++++||..||.|+...
T Consensus       216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~  267 (372)
T PLN02839        216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKA  267 (372)
T ss_pred             CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHH
Confidence            33578888887  355999999 88999999999999999999999999754

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.97  E-value=7.8e-06  Score=55.26  Aligned_cols=55  Identities=25%  Similarity=0.468  Sum_probs=33.7

Q ss_pred             EEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         71 AVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        71 ~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      +++++.++++||.||.. +.|+|+|+||.-..+...+ .+.+.+.+.+..|+.+...
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~   57 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV   57 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh
Confidence            56778889999999985 6699999999988874444 4555555666777765543

>KOG2457|consensus

Probab=97.56  E-value=5.4e-05  Score=61.68  Aligned_cols=50  Identities=6%  Similarity=-0.009  Sum_probs=47.5

Q ss_pred             CccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccC
Q psy10892          1 MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPAR   50 (135)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~   50 (135)
                      +|.++.+++++.-++.+||+.|.||++.|+++.|.|..|+..+.|.|+..
T Consensus       261 ~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvss~CrA~q~  310 (555)
T KOG2457|consen  261 SWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQL  310 (555)
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcHHHHHHHhH
Confidence            48899999999999999999999999999999999999999999999873

>KOG4195|consensus

Probab=97.55  E-value=7.5e-05  Score=56.57  Aligned_cols=38  Identities=34%  Similarity=0.696  Sum_probs=33.2

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHH
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET  119 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~  119 (135)
                      +++.+||.+   .|.|.+|||.+|+||.+-.+++||+.||.
T Consensus       140 e~vavkr~d---~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  140 EFVAVKRPD---NGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             EEEEEecCC---CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            456666665   58999999999999999999999999996

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=96.62  E-value=0.018  Score=42.72  Aligned_cols=52  Identities=25%  Similarity=0.418  Sum_probs=36.0

Q ss_pred             EEEEEEEcCCC--eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892         68 IVMAVIINSKN--AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM  123 (135)
Q Consensus        68 ~v~~~i~~~~~--~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~  123 (135)
                      +.+++++...+  +|||.|...    ..|-+|||...+||+..+...|.|.+-+|..-
T Consensus        46 Ve~Vllvh~h~~PHvLLLq~~~----~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   46 VEGVLLVHEHGHPHVLLLQIGN----TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             EEEEEEEEETTEEEEEEEEETT----TEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred             EEEEEEEecCCCcEEEEEeccC----ccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence            34455555444  799999654    48999999999999999999999999999754

...

>KOG2937|consensus

Probab=96.49  E-value=0.0005  Score=54.77  Aligned_cols=54  Identities=30%  Similarity=0.570  Sum_probs=43.3

Q ss_pred             EEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         69 VMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        69 v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      .+..+.+.. .++||++....   ..|.||.|++..+|+-.++|.||+.||+|.+.+.
T Consensus        85 ~ga~ild~~~sr~llv~g~qa---~sw~fprgK~~kdesd~~caiReV~eetgfD~sk  139 (348)
T KOG2937|consen   85 RGAIILDEKRSRCLLVKGWQA---SSWSFPRGKISKDESDSDCAIREVTEETGFDYSK  139 (348)
T ss_pred             chHhhhhhhhhhhheeeceec---ccccccCccccccchhhhcchhcccchhhcCHHH
Confidence            344555544 48888876543   3599999999999999999999999999998763

>KOG0142|consensus

Probab=96.14  E-value=0.0023  Score=47.97  Aligned_cols=64  Identities=23%  Similarity=0.356  Sum_probs=48.4

Q ss_pred             CCcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEE-eeeEec-------CC--CCCHHHHHHHHHHHHHCCcccc
Q psy10892         62 KKTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWY-LPAGKV-------EE--GETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        62 ~~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~-~PgG~i-------~~--gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      +...+++..+++++.++++||+||+..  .+++.|+ ..++|.       +.  +..+..||+|.|.-|+|+....
T Consensus        48 kglLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~  123 (225)
T KOG0142|consen   48 KGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEE  123 (225)
T ss_pred             hhhhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccc
Confidence            346888999999999999999999853  3788887 333332       11  2267889999999999996654

>KOG4432|consensus

Probab=96.03  E-value=0.008  Score=47.69  Aligned_cols=42  Identities=31%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             eEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEeC
Q psy10892         93 AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA  134 (135)
Q Consensus        93 ~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~~  134 (135)
                      ..++.+|-|+++.|+.+.|..|+.||.|.++...+++-|.++
T Consensus        80 tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~  121 (405)
T KOG4432|consen   80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITF  121 (405)
T ss_pred             eeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEE
Confidence            456779999999999999999999999999999988887764

>KOG4313|consensus

Probab=95.74  E-value=0.0087  Score=46.29  Aligned_cols=46  Identities=20%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             eEEEEEeec--CCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892         79 AVLMMQEAK--SICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMA  124 (135)
Q Consensus        79 ~vLL~~r~~--~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~  124 (135)
                      .+++.||++  ..|+|.|. ..+|.+.-|-++.++++.|..||..++..
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~  197 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSD  197 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchh
Confidence            688888874  66999999 88999999999999999999999999873

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=94.90  E-value=0.15  Score=37.25  Aligned_cols=61  Identities=25%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             EEEEcCCCeEEEEEeecCC----CCCeEEe-eeEecCCCC---CHHHH----HHHHHHHHHCCc---cccceEEEEE
Q psy10892         71 AVIINSKNAVLMMQEAKSI----CNGAWYL-PAGKVEEGE---TLEEA----VKREVLEETGLE---MAPTTLLAVE  132 (135)
Q Consensus        71 ~~i~~~~~~vLL~~r~~~~----~~g~w~~-PgG~i~~gE---s~~~a----a~REl~EE~Gl~---~~~~~~~~~~  132 (135)
                      ++|.+. ++||+.+|-...    ..+.+++ .|||+..++   |..+.    +.||+.||.++.   ....+++|+-
T Consensus        66 vvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlI  141 (203)
T COG4112          66 VVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLI  141 (203)
T ss_pred             EEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeee
Confidence            444444 599999986422    3456663 489998765   44443    669999999997   4445566653

>KOG1689|consensus

Probab=94.28  E-value=0.15  Score=37.46  Aligned_cols=49  Identities=27%  Similarity=0.474  Sum_probs=39.0

Q ss_pred             EEEEEEEcCC--CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHC
Q psy10892         68 IVMAVIINSK--NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG  120 (135)
Q Consensus        68 ~v~~~i~~~~--~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~G  120 (135)
                      +-+++++...  .+|||.|-.+    ..+-+|||..++||+-.+...|-+-|-+|
T Consensus        72 vegvlivheH~lPHvLLLQig~----tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   72 VEGVLIVHEHNLPHVLLLQIGN----TFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             eeeeEEEeecCCCeEEEEeeCC----EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            3455555444  5888888653    46789999999999999999999999999

>KOG4432|consensus

Probab=89.14  E-value=0.5  Score=37.75  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             eEEeeeEecCCCCCHHHHHHHHHHHHHCCccccce
Q psy10892         93 AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT  127 (135)
Q Consensus        93 ~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~  127 (135)
                      ..++..|.++..-|..+-|.||..||+|.++...+
T Consensus       285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~  319 (405)
T KOG4432|consen  285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDS  319 (405)
T ss_pred             eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHH
Confidence            45566888988889999999999999999988653

>KOG4548|consensus

Probab=82.88  E-value=2.4  Score=33.01  Aligned_cols=42  Identities=17%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             EEEEEeecCCCCCeEEeeeEec-CCCCCHHHHHHHHHHHHHCCc
Q psy10892         80 VLMMQEAKSICNGAWYLPAGKV-EEGETLEEAVKREVLEETGLE  122 (135)
Q Consensus        80 vLL~~r~~~~~~g~w~~PgG~i-~~gEs~~~aa~REl~EE~Gl~  122 (135)
                      +||+++.-+. .+.|.||.+.. ++++++.-+|.|+|++-.|-.
T Consensus       141 yLLV~~k~g~-~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~  183 (263)
T KOG4548|consen  141 YLLVKRKFGK-SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN  183 (263)
T ss_pred             EEEEeeccCc-cceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence            5677754211 46899999999 899999999999999988743

>PF14443 DBC1: DBC1

Probab=82.17  E-value=1.5  Score=30.57  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=26.6

Q ss_pred             CCeEEee--eEecCCC-CCHHHHHHHHHHHHHCCcccc
Q psy10892         91 NGAWYLP--AGKVEEG-ETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        91 ~g~w~~P--gG~i~~g-Es~~~aa~REl~EE~Gl~~~~  125 (135)
                      +|.|.--  ||..+.+ ..+..+|+|-+++-||++.+.
T Consensus        23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~   60 (126)
T PF14443_consen   23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN   60 (126)
T ss_pred             CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence            6788743  5555553 377899999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
3gg6_A	156	Crystal Structure Of The Nudix Domain Of Human Nudt		3e-19
3grn_A	153	Crystal Structure Of Mutt Protein From Methanosarci		3e-07
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		3e-07
3hhj_A	158	Crystal Structure Of Mutator Mutt From Bartonella H		1e-06
3smd_A	153	Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM		1e-05
2gt4_A	160	Crystal Structure Of The Y103f Mutant Of The Gdp-Ma		2e-05
1rya_A	160	Crystal Structure Of The E. Coli Gdp-Mannose Mannos		2e-05
2i8t_A	167	Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp-Mannose		2e-05
2azw_A	148	Crystal Structure Of The Mutt/nudix Family Protein		2e-05
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		3e-05
3fk9_A	188	Crystal Structure Of Mmutator Mutt Protein From Bac		4e-05
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		5e-05
3r03_A	144	The Crystal Structure Of Nudix Hydrolase From Rhodo		6e-05
3q93_A	176	Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1) Len		7e-05
3cng_A	189	Crystal Structure Of Nudix Hydrolase From Nitrosomo		7e-05
1iry_A	156	Solution Structure Of The Hmth1, A Nucleotide Pool		8e-05
3ees_A	153	Structure Of The Rna Pyrophosphohydrolase Bdrpph Le		1e-04
3dku_A	153	Crystal Structure Of Nudix Hydrolase Orf153, Ymfb,		2e-04
4dyw_A	157	Crystal Structure Of Mutt Nudix Hydrolase From Burk		2e-04
2kdv_A	164	Solution Structure Of Rna Pyrophosphohydrolase Rpph		3e-04
1vk6_A	269	Crystal Structure Of Nadh Pyrophosphatase (1790429)		3e-04
2gb5_A	269	Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1		3e-04
3n77_A	144	Crystal Structure Of Idp01880, Putative Ntp Pyropho		4e-04
3oga_A	165	1.75 Angstrom Resolution Crystal Structure Of A Put		4e-04
2b0v_A	153	Nudix Hydrolase From Nitrosomonas Europaea Length =		5e-04
3gwy_A	140	Crystal Structure Of Putative Ctp Pyrophosphohydrol		5e-04
3q1p_A	205	Crystal Structure Of Cdp-Chase Length = 205		8e-04

>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18 Length = 156

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 57/73 (78%)
Query: 60  RLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
           RL+K V Y+V+AV ++ ++ VL++QEAK  C G+WYLPAG++E GET+ EA++REV EE 
Sbjct: 14  RLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEA 73
Query: 120 GLEMAPTTLLAVE 132
           GL   P TLL+VE
Sbjct: 74  GLHCEPETLLSVE 86

>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina Mazei Go1 Length = 153

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 61  LKKTVTYIVMAVIINSKNAVLMMQEAK-SICN-GAWYLPAGKVEEGETLEEAVKREVLEE 118
           L+K     V A+I N K   L+++ ++ S  N G W LP GKV   E+L+E V REV EE
Sbjct: 3   LEKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEE 62
Query: 119 TGLEMAP 125
           TG+ M P
Sbjct: 63  TGITMVP 69

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 72  VIINSKNAVLMMQEAKSICN-----GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
           V++N +  +L++QE K I       G W++P+G VE+GE  ++A  RE  EETGL + P 
Sbjct: 19  VLLNERGDILLVQE-KGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV 77
Query: 127 TLLAVETAR 135
             L     R
Sbjct: 78  KFLGAYLGR 86

>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae Length = 158

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 61  LKKTVTYIVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           +K ++  +V   +++  N VL+ Q  E KS+  G W  P GKVE+GET E ++ RE+ EE
Sbjct: 24  IKSSLLIVVACALLDQDNRVLLTQRPEGKSLA-GLWEFPGGKVEQGETPEASLIRELEEE 82
Query: 119 TGLEMAPTTLLAVETA 134
            G+ +    L  +  A
Sbjct: 83  LGVHVQADNLFPLTFA 98

>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM BACILLUS Thuringiensis Length = 153

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           V AVI N +  +L            W LPAG +E GET EEAV REV EETGL++
Sbjct: 24  VAAVIKNEQGELLFQYPGGEY----WSLPAGAIEPGETPEEAVIREVWEETGLKV 74

>pdb|2GT4|A Chain A, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2 Length = 160

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55  ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           E F   ++ T    +  ++ NS+   L+ +       G W++P G+V++ ETLE A +R 
Sbjct: 7   EDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 66
Query: 115 VLEETGLEMAPT 126
            + E GL +  T
Sbjct: 67  TMAELGLRLPIT 78

>pdb|1RYA|A Chain A, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase In Complex With Gdp And Mg Length = 160

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55  ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           E F   ++ T    +  ++ NS+   L+ +       G W++P G+V++ ETLE A +R 
Sbjct: 7   EDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 66
Query: 115 VLEETGLEMAPT 126
            + E GL +  T
Sbjct: 67  TMAELGLRLPIT 78

>pdb|2I8T|A Chain A, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp-Mannose Complex Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55  ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           E F   ++ T    +  ++ NS+   L+ +       G W++P G+V++ ETLE A +R 
Sbjct: 7   EDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 66
Query: 115 VLEETGLEMAPT 126
            + E GL +  T
Sbjct: 67  TMAELGLRLPIT 78

>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From Enterococcus Faecalis Length = 148

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 9/69 (13%)
Query: 60  RLKKTVTYIVM--AVIINSK---NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           + ++T+TY     A II SK   N ++++Q      NGA++LP G++E  ET EEA+ RE
Sbjct: 8   KREETLTYQTRYAAYIIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHRE 63
Query: 115 VLEETGLEM 123
           VLEE G+ +
Sbjct: 64  VLEELGISV 72

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
            V+ N+K  VL++++      G W  P G  E GE+LEEA  REV EETG+
Sbjct: 7   GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGV 53

>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus Halodurans Length = 188

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           V   I+   + VL++Q+ +    G W  P GK+E GE++ E VKRE  EETG+
Sbjct: 6   VTNCIVVDHDQVLLLQKPR---RGWWVAPGGKMEAGESILETVKREYWEETGI 55

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
            V+ N+K  VL++++      G W  P G  E GE+LEEA  REV E+TG+
Sbjct: 7   GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEQTGV 53

>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From Rhodospirillum Rubrum Length = 144

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 61  LKKTVTYIVMAVIINSKNAVLMMQE--AKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           L   +  +  A +I+    VL+ Q    KS+  G W  P GK+E GET E A+ RE+ EE
Sbjct: 3   LGLPILLVTAAALIDPDGRVLLAQRPPGKSLA-GLWEFPGGKLEPGETPEAALVRELAEE 61
Query: 119 TGLE 122
            G++
Sbjct: 62  LGVD 65

>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1) Length = 176

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 72  VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           V++     VL+  + +    G W    GKV+EGET+E+  +RE+ EE+GL
Sbjct: 30  VLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 79

>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas Europaea Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 48  PARGVIPESFVPRLKKTVTY----IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEE 103
           P    +P    P+   T+ Y    +++  I   +N VL+ + A +   G W LPAG  E 
Sbjct: 18  PEGDTLPRYICPKCH-TIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFXEN 76
Query: 104 GETLEEAVKREVLEETGLEMAPTTLLAV 131
            ETL +   RE LEE    +    L AV
Sbjct: 77  NETLVQGAARETLEEANARVEIRELYAV 104

>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool Sanitization Enzyme Length = 156

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 72  VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           V++     VL+  + +    G W    GKV+EGET+E+  +RE+ EE+GL
Sbjct: 10  VLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 59

>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph Length = 153

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 60  RLKKTVTYIVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
           +++K     V+A  +     +L+ Q  E  S+  G W  P GK+E GET EEA+ RE+ E
Sbjct: 15  KIRKGHWIPVVAGFLRKDGKILVGQRPENNSLA-GQWEFPGGKIENGETPEEALARELNE 73
Query: 118 ETGLE 122
           E G+E
Sbjct: 74  ELGIE 78

>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From Escherichia Coli K-1 Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 67  YIVMAVIINSKNAVLMMQEAKSICNGA--WYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
           ++ +A +++++   L+++E     NG   W  PAG +E  ETL EA  RE+ EETG+   
Sbjct: 5   HVTVACVVHAEGKFLVVEET---INGKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
Query: 125 PTTLL 129
           P   +
Sbjct: 62  PQHFI 66

>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From Burkholderia Pseudomallei Length = 157

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 74  INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
           I     +L+++  ++   G W LP GKV+  E +E AV RE+ EE G+ +   TLL V
Sbjct: 36  IVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV 93

>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From Escherichia Coli Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V  VI N +  V+    A+     +W  P G +  GE+ E+A+ RE+ EE GL      +
Sbjct: 11  VGIVICNRQGQVMW---ARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI 67
Query: 129 LA 130
           LA
Sbjct: 68  LA 69

>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From Escherichia Coli K12 At 2.20 A Resolution Length = 269

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 55  ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           E + P++   +      V I   +++L+ Q  +   NG   + AG VE GETLE+AV RE
Sbjct: 133 ERYYPQIAPCII-----VAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVARE 186
Query: 115 VLEETGLEM 123
           V EE+G+++
Sbjct: 187 VXEESGIKV 195

>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 At 2.30 A Resolution Length = 269

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 55  ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
           E + P++   +      V I   +++L+ Q  +   NG   + AG VE GETLE+AV RE
Sbjct: 133 ERYYPQIAPCII-----VAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVARE 186
Query: 115 VLEETGLEM 123
           V EE+G+++
Sbjct: 187 VXEESGIKV 195

>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp Pyrophosphohydrolase Of Salmonella Typhimurium Lt2 Length = 144

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 68  IVMAVIINSKNAVLM-MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           IV  +I N    +L  M + + +  G W L  G VE GE +EEA++RE+ EE G ++
Sbjct: 9   IVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 65

>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative Ntp Pyrophosphohydrolase (Yfao) From Salmonella Typhimurium Lt2 Length = 165

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 68  IVMAVIINSKNAVLM-MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           IV  +I N    +L  M + + +  G W L  G VE GE +EEA++RE+ EE G ++
Sbjct: 30  IVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 86

>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea Length = 153

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           + +A +I   +  L+++E           PAG +E GE++ +A  REVLEETG    P  
Sbjct: 9   VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 68
Query: 128 LLAV 131
           L  +
Sbjct: 69  LTGI 72

>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase From Bacteroides Fragilis Length = 140

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 69  VMAVIINSKNAVLMMQEAK---SICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           V+A +I      L +Q  +   S  +  +  P GKVEEGE+L+EA++RE++EE
Sbjct: 8   VVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEE 60

>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase Length = 205

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           + AV+   +N  L+  + KS  +G W LP G  + G T  E   +EV EETG E+    L
Sbjct: 71  IRAVVF--QNEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKL 126
Query: 129 LAV 131
           LA+
Sbjct: 127 LAI 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	7e-29
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	6e-23
3grn_A	153	MUTT related protein; structural genomics, hydrola	3e-22
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	4e-21
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	5e-21
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	4e-20
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	9e-20
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	3e-18
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	4e-18
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	9e-18
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	2e-17
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-17
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	2e-17
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	1e-16
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	1e-16
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	4e-16
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	7e-16
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-15
3f13_A	163	Putative nudix hydrolase family member; structural	2e-15
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-14
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	1e-14
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-14
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-14
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	5e-14
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	9e-14
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	1e-13
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	1e-13
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-13
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	2e-13
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	4e-13
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	6e-13
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	1e-12
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-12
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	2e-12
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	6e-12
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	7e-12
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	9e-12
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	1e-11
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	1e-11
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	3e-11
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-10
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	2e-10
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-09
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-09
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	3e-09
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	1e-08
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-08
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	4e-08
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	5e-08
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	2e-07
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	2e-07
2fb1_A	226	Conserved hypothetical protein; structural genomic	4e-07
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	5e-07
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	9e-07
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	1e-06
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	1e-06
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	1e-06
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	2e-06
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	3e-06
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	4e-06
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	8e-06
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	2e-05
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	5e-05
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	1e-04
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	2e-04

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score =  102 bits (255), Expect = 7e-29
 Identities = 41/80 (51%), Positives = 57/80 (71%)

Query: 56  SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
               RL+K V Y+V+AV ++ ++ VL++QEAK  C G+WYLPAG++E GET+ EA++REV
Sbjct: 10  PAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREV 69

Query: 116 LEETGLEMAPTTLLAVETAR 135
            EE GL   P TLL+VE   
Sbjct: 70  KEEAGLHCEPETLLSVEERG 89

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 86.8 bits (215), Expect = 6e-23
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           + +A +I   +  L+++E           PAG +E GE++ +A  REVLEETG    P  
Sbjct: 9   VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 68

Query: 128 LLAVETAR 135
           L  +    
Sbjct: 69  LTGIYHWT 76

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 85.1 bits (211), Expect = 3e-22
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 60  RLKKTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLE 117
            L+K     V A+I N K   L+++ +++     G W LP GKV   E+L+E V REV E
Sbjct: 2   SLEKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWE 61

Query: 118 ETGLEMAPTTLLAVET 133
           ETG+ M P  +     
Sbjct: 62  ETGITMVPGDIAGQVN 77

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 83.4 bits (206), Expect = 4e-21
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 54  PESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
              +   +   V   V   + +     +++ + ++     W  P G  E  E + +   R
Sbjct: 16  ENLYFQSMSHQV--GVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVR 73

Query: 114 EVLEETGLEMAPTTLLAVET 133
           EV EETG++    ++L++  
Sbjct: 74  EVFEETGIKSEFRSVLSIRQ 93

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 82.1 bits (203), Expect = 5e-21
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 67  YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
           ++ +A +++++   L+++E  +     W  PAG +E  ETL EA  RE+ EETG+   P 
Sbjct: 5   HVTVACVVHAEGKFLVVEETIN-GKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63

Query: 127 TLLAVET 133
             + +  
Sbjct: 64  HFIRMHQ 70

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 79.8 bits (197), Expect = 4e-20
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 69  VMAVIINSKNAVLMMQEA----KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
              V++N +  +L++QE          G W++P+G VE+GE  ++A  RE  EETGL + 
Sbjct: 16  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 75

Query: 125 PTTLLAVETAR 135
           P   L     R
Sbjct: 76  PVKFLGAYLGR 86

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 78.8 bits (194), Expect = 9e-20
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 54  PESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
            E F   ++ T    +  ++ NS+   L+ +       G W++P G+V++ ETLE A +R
Sbjct: 6   QEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFER 65

Query: 114 EVLEETGLEMAPTTL 128
             + E GL +  T  
Sbjct: 66  LTMAELGLRLPITAG 80

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 74.7 bits (184), Expect = 3e-18
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
             +I   + +L+ ++      G +Y   G ++  E+ E+AV REV EE G++     L  
Sbjct: 23  TALIVQNHKLLVTKD-----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAF 77

Query: 131 V 131
           V
Sbjct: 78  V 78

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 74.3 bits (183), Expect = 4e-18
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           +     I     +L+++  ++   G W LP GKV+  E +E AV RE+ EE G+ +   T
Sbjct: 30  VGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERAT 89

Query: 128 LLAV 131
           LL V
Sbjct: 90  LLCV 93

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 74.0 bits (182), Expect = 9e-18
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
            V  ++I     VL++++  +  N  W LP G+VE GETLEEA+ RE+ EETGLE+    
Sbjct: 25  RVTGILIE-DEKVLLVKQKVA--NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKK 81

Query: 128 LLAV 131
           LL V
Sbjct: 82  LLYV 85

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 72.5 bits (178), Expect = 2e-17
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 62  KKTVTYI----VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
           ++T+TY        ++   +N  +++ +A    NGA++LP G++E  ET EEA+ REVLE
Sbjct: 10  EETLTYQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLE 66

Query: 118 ETGLEMAPTTLLAV 131
           E G+ +     L  
Sbjct: 67  ELGISVEIGCYLGE 80

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 72.7 bits (179), Expect = 2e-17
 Identities = 20/76 (26%), Positives = 27/76 (35%)

Query: 59  PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
            R +      ++ V       VL+  +           P G VE GE    A  REV EE
Sbjct: 4   TRTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEE 63

Query: 119 TGLEMAPTTLLAVETA 134
           TGL ++  T       
Sbjct: 64  TGLRLSGVTFCGTCEW 79

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 72.6 bits (178), Expect = 2e-17
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           IV + ++     VL+++  +    G +  P G VE  ET  EAVKRE  EETG+ + P  
Sbjct: 2   IVTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 128 LLAVETA 134
                  
Sbjct: 59  FTYGIID 65

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 71.3 bits (175), Expect = 1e-16
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 66  TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
              V   I+   + VL++Q+ +    G W  P GK+E GE++ E VKRE  EETG+ +  
Sbjct: 3   LQRVTNCIVVDHDQVLLLQKPR---RGWWVAPGGKMEAGESILETVKREYWEETGITVKN 59

Query: 126 TTLLAV 131
             L  +
Sbjct: 60  PELKGI 65

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 70.1 bits (172), Expect = 4e-16
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           +++  I   +N VL+ + A +   G W LPAG +E  ETL +   RE LEE    +    
Sbjct: 41  VIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRE 100

Query: 128 LLAV 131
           L AV
Sbjct: 101 LYAV 104

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 69.7 bits (171), Expect = 7e-16
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 54  PESFVPRLKKTVTY----IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEE 109
            E           Y    + +  ++     +L ++E     +G W LP G  + G T  E
Sbjct: 51  WEVVEKLFASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTE 107

Query: 110 AVKREVLEETGLEMAPTTLLAV 131
              +EV EETG E+    LLA+
Sbjct: 108 VAAKEVFEETGYEVDHFKLLAI 129

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 67.8 bits (166), Expect = 2e-15
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 59  PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICN-GAWYLPAGKVEEGETLEEAVKREVLE 117
            R + T+   +  +       V+M   A        +  P G VE  E   E+V RE+ E
Sbjct: 2   SRSQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYE 61

Query: 118 ETGLEMAPTTLLAVET 133
           ETGL +    L+ ++ 
Sbjct: 62  ETGLTIQNPQLVGIKN 77

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 67.6 bits (165), Expect = 2e-15
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 59  PRLKKTVTYIVMA-VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
              +        A  II   + VL+         G + LP GK   GE   +A+ RE+ E
Sbjct: 7   KNERLPSDLARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIRE 62

Query: 118 ETGLEMAPTTLLAV 131
           ETGL +     L  
Sbjct: 63  ETGLRINSMLYLFD 76

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           +     I  ++ +L++QE     +G W LP G  +  +++++ V +EV EE GL++    
Sbjct: 71  LDTRAAIFQEDKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQR 126

Query: 128 LLAV 131
           ++A+
Sbjct: 127 VVAI 130

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 68  IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
            ++  +I +    L+ +  + + +  G W L  G VE GE +EEA++RE+ EE G ++  
Sbjct: 29  TIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLIL 88

Query: 126 TTLLAV 131
           + +   
Sbjct: 89  SDITPW 94

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 64.2 bits (157), Expect = 2e-14
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
            V+ N+K  VL++++      G W  P G  E GE+LEEA  REV EETG+       L 
Sbjct: 7   GVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLY 62

Query: 131 V 131
            
Sbjct: 63  P 63

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 64.3 bits (157), Expect = 4e-14
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
            V++     VL+  + +    G W    GKV+EGET+E+  +RE+ EE+GL +     + 
Sbjct: 29  LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 88

Query: 131 V 131
            
Sbjct: 89  Q 89

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 63.9 bits (156), Expect = 5e-14
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 61  LKKTVTYIVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
           +K ++  +V   +++  N VL+ Q        G W  P GKVE+GET E ++ RE+ EE 
Sbjct: 24  IKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEEL 83

Query: 120 GLEMAPTTLLAVETAR 135
           G+ +    L  +  A 
Sbjct: 84  GVHVQADNLFPLTFAS 99

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 62.7 bits (153), Expect = 9e-14
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 64  TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
               I+      +   +++++           LP G VE GE +EEA  RE+ EETGLE+
Sbjct: 11  ATDVIIRLWDGENFKGIVLIERKYP--PVGLALPGGFVEVGERVEEAAAREMREETGLEV 68

Query: 124 APTTLLAV 131
               L+ V
Sbjct: 69  RLHKLMGV 76

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           + +  ++   + +LM+Q         W LP G +E  ET+ +A+ RE+ EET + +    
Sbjct: 209 VTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQ 268

Query: 128 LLAV 131
           L   
Sbjct: 269 LAIA 272

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 62.2 bits (152), Expect = 1e-13
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 68  IVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
           I + +I N  N + + +  A +        P GK+E GET E+AV RE+ EE G+     
Sbjct: 6   IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 127 TLL 129
           +L 
Sbjct: 66  SLF 68

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 61  LKKTVTYIVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
           L   +  +  A +I+    VL+ Q        G W  P GK+E GET E A+ RE+ EE 
Sbjct: 3   LGLPILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEEL 62

Query: 120 GLEMAPTTLLAVETAR 135
           G++   + L  +  A 
Sbjct: 63  GVDTRASCLAPLAFAS 78

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 62  KKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
           KK++     A+   + + +L++Q  +   + +W  P GK+ + E   +   REV EE G 
Sbjct: 1   KKSIPVRGAAIFNENLSKILLVQGTE---SDSWSFPRGKISKDENDIDCCIREVKEEIGF 57

Query: 122 E 122
           +
Sbjct: 58  D 58

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 60.7 bits (148), Expect = 6e-13
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 59  PRLKKTVTYIVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
            +++K     V+A  +     +L+ Q    +   G W  P GK+E GET EEA+ RE+ E
Sbjct: 14  SKIRKGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNE 73

Query: 118 ETGLEMAPTTLLAV 131
           E G+E     L   
Sbjct: 74  ELGIEAEVGELKLA 87

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 59.9 bits (146), Expect = 1e-12
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 69  VMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           V+A II     +L+ Q  A+S   G W    GKVE  E+  +A+ RE+ EE G+E     
Sbjct: 11  VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE 70

Query: 128 LLAVET 133
            +A   
Sbjct: 71  YVASHQ 76

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 59.6 bits (144), Expect = 2e-12
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           ++  +   +     ++          W   AG  E+ E + E  KRE +EE  L++    
Sbjct: 10  VIPFIKTEANYQFGVLHRTD---ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKM 66

Query: 128 LLA 130
              
Sbjct: 67  YSL 69

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 20/111 (18%), Positives = 37/111 (33%)

Query: 20  LENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNA 79
             +     +    +     +               +          T+I    ++     
Sbjct: 156 YLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGH 215

Query: 80  VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
           VLM++       G   LP G +++ ETL E + RE+ EET L++    L  
Sbjct: 216 VLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRG 266

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 58.2 bits (141), Expect = 6e-12
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           ++  + N+    L++Q +       W  P G VE GE   E   R   EE G+E    T+
Sbjct: 20  LIPKVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI 77

Query: 129 LA 130
           + 
Sbjct: 78  IE 79

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 59.7 bits (144), Expect = 7e-12
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 71  AVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           A++++      ++++  K+  +  W  P GK+++ E+  +   REV EETG + + 
Sbjct: 106 AIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 159

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 59.7 bits (144), Expect = 9e-12
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 80  VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
           VL++Q        +W LP G V   E+ E++V RE  EETG+ ++   +  + +
Sbjct: 58  VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHS 111

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 58.3 bits (141), Expect = 1e-11
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 91  NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
            G W +P G V+E E+ E+A +RE+ EET L   P     V
Sbjct: 66  GGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGV 106

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
             ++V I  K+ VL+    K           G +E  E  EEA  RE  EE GL +    
Sbjct: 7   FTVSVFIVCKDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYN 63

Query: 128 LLAVET 133
            + +  
Sbjct: 64  PIDINL 69

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 69  VMAVIINSKNAVLMMQ---EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           V+A +I      L +Q      S  +  +  P GKVEEGE+L+EA++RE++EE    +  
Sbjct: 8   VVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEV 67

Query: 126 TTLLAV 131
              L  
Sbjct: 68  GEKLLT 73

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 71  AVIINSKNA---VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
            VI          L++Q +       W  P G V+ GE   +A  RE  EE  + 
Sbjct: 8   LVIYRKLAGKIEFLLLQASYP--PHHWTPPKGHVDPGEDEWQAAIRETKEEANIT 60

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
           V  VI N +  V+    A+     +W  P G +  GE+ E+A+ RE+ EE GL      +
Sbjct: 11  VGIVICNRQGQVMW---ARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI 67

Query: 129 LA 130
           LA
Sbjct: 68  LA 69

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 92  GAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
             W  P GK+E+ ET   A  RE+ EETG  
Sbjct: 49  DDWSWPKGKLEQNETHRHAAVREIGEETGSP 79

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 67  YIVMAVII-NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
             ++ VI       VLM+Q         W    G VEEGET  +A  REV EE  +++  
Sbjct: 10  VSILVVIYAQDTKRVLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA 67

Query: 126 TTLLAVET 133
             L  ++ 
Sbjct: 68  EQLTLIDC 75

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 69  VMAVIINSKNAVLMMQEAKSICN-GAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           V   ++N+   +     A  +    AW +P G ++EGE    A  RE+ EETG+ 
Sbjct: 17  VGICLMNNDKKIFA---ASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 98  AGKVEEGETLEEAVKREVLEETGLE 122
           AG VE GETLE+AV REV+EE+G++
Sbjct: 170 AGFVEVGETLEQAVAREVMEESGIK 194

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
            +     S+  VL++  ++      W +P G +E  E    A  REV EE G++     L
Sbjct: 45  CLCFRSESEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL 102

Query: 129 LAV 131
           + +
Sbjct: 103 VGI 105

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           VM V I   + +L+ + A    +       G ++ GE++ EA  RE+ EE G  
Sbjct: 52  VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 105

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 48.5 bits (115), Expect = 5e-08
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 71  AVIINSKNA-VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           A  +N +    LM+         +W    G  +  +   +   +E+ EETG++
Sbjct: 50  AFAVNKERNKFLMIHHNI---YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK 99

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGLE 122
           + AG VE+GE L  A  RE+LEE G  
Sbjct: 36  IVAGGVEKGEDLGAAAARELLEEVGGA 62

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGLE 122
           +PAGKV+EGET E A +RE+ EE G E
Sbjct: 72  VPAGKVDEGETPEAAARRELREEVGAE 98

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 59  PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           P     +  I+       + ++L+++       G W L  G V++ E++++A KR + E 
Sbjct: 10  PTFYLGIDCIIFGFN-EGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 68

Query: 119 TGLEMAPTTLLAV 131
           TGLE      +  
Sbjct: 69  TGLENVYMEQVGA 81

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 94  WYLPAGKVEEGETLEEAVKREVLEETGLE 122
             +PAG +E GE   EA +RE+ E+TGL 
Sbjct: 62  LEIPAGLIEPGEDPLEAARRELAEQTGLS 90

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 45.6 bits (107), Expect = 9e-07
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 58  VPRLKKTVTYIVMAVIINSKNA--VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
           + R K+  +   +   ++ K+    + ++       G W +P G V+ GE +   +KRE 
Sbjct: 117 ITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREF 173

Query: 116 LEETGLEMAPTTLLAVET 133
            EE    +  T+    E 
Sbjct: 174 GEEALNSLQKTSAEKREI 191

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGLE 122
            PAG +++GET E A  RE+ EETG +
Sbjct: 96  FPAGLIDDGETPEAAALRELEEETGYK 122

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 68  IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA-GKVEEGETLEEAVKREVLEETGLEMA 124
           +V A + NS+  + + +   +KS+   A  +   G V+ GET EEA +RE  EE  +E+ 
Sbjct: 36  VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEID 95

Query: 125 PTTLLAVET 133
             +   + +
Sbjct: 96  ALSWRPLAS 104

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 68  IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA-GKVEEGETLEEAVKREVLEETGLEMA 124
               V+ +    +L+ +  E K    G     A G V+  E L E+ +RE  EE G+   
Sbjct: 39  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 98

Query: 125 PTTLL 129
           P    
Sbjct: 99  PFAEH 103

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 73  IINSKNAVLMMQEAKSICNGAWYLPAGKVEEGE-TLEEAVKREVLEETGLEMAPTTLLAV 131
            +  +  +LMM       +G    P G V+  + +LEE +KRE+ EE G  +A   +   
Sbjct: 51  RVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTED 106

Query: 132 ETA 134
           +  
Sbjct: 107 DYR 109

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 64  TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEE--GETLEEAVKREVLEETGL 121
           TV  ++     + +  VL++Q +     G W LP G ++E   E+LE+ V R++ E+T +
Sbjct: 24  TVDAVLFTYH-DQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAV 82

Query: 122 EMAPTTLLAVETAR 135
                  L      
Sbjct: 83  VPPYIEQLCTVGNN 96

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
           + AG +EEGE++E+  +RE +EE GL +  T  + 
Sbjct: 94  MVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVL 128

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 91  NGAWYLPAGKVEEGE-TLEEAVKREVLEETGLEMAPTTLLAVE 132
           +G    P G V+  + +LE+ + RE+ EE G   A   +   +
Sbjct: 74  DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTD 116

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 94  WYLPAGKVE-EGETLEEAVKREVLEETGLE 122
           W LPAG ++  GE       RE+ EE GL+
Sbjct: 72  WELPAGLLDVAGEPPHLTAARELREEVGLQ 101

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 96  LPAGKVEEGETLEEAVKREVLEETGLE 122
             AG ++  E  E  +++E +EETG E
Sbjct: 83  SCAGLLDNDEP-EVCIRKEAIEETGYE 108

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 51  GVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETL 107
           G + +         +     + + N+K  +L+ + A  K    G W     G  + GE+ 
Sbjct: 17  GTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN 76

Query: 108 EEAVKREVLEETGLEMAPTTLL 129
           E+AV R    E G+E+ P   +
Sbjct: 77  EDAVIRRCRYELGVEITPPESI 98

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Length = 218

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 96  LPAGKVEE-GETLEEAVKREVLEETGLEMAPTTL 128
           L AG V++ G +LEE   +E  EE G  +AP+ L
Sbjct: 99  LCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDL 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.84
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.75
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.74
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.72
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.72
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.71
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.71
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.71
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.7
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.7
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.7
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.7
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.69
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.69
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.69
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.68
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.68
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.68
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.68
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.67
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.67
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.66
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.66
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.66
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.66
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.66
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.66
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.65
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.65
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.64
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.64
3f13_A	163	Putative nudix hydrolase family member; structural	99.64
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.64
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.63
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.63
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.63
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.63
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.63
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.63
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.63
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.62
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.62
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.62
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.62
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.62
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.61
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.61
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.6
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.6
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.6
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.6
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.59
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.59
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.59
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.58
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.57
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.56
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.56
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.55
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.55
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.54
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.53
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.53
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.51
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.47
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.46
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.43
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.4
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.39
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.37
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.28
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.24
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.23
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.18
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.18
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.01
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.86
3n5n_X	287	A/G-specific adenine DNA glycosylase; alpha-helice	91.14
1kg2_A	225	A/G-specific adenine glycosylase; DNA repair, hydr	89.83
1kea_A	221	Possible G-T mismatches repair enzyme; DNA repair,	88.85
2abk_A	211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	80.27

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.84  E-value=7.5e-22  Score=157.79  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             cccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCCCeE
Q psy10892          3 RYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSKNAV   80 (135)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~~~v   80 (135)
                      .+++.+++.......+++.+.+|...|.+..|.|+.|+....|.+...+.+.  |...++.......++++++.+++++|
T Consensus       175 ~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~~~~~~~~~vi~~~~g~v  254 (369)
T 3fsp_A          175 QIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRV  254 (369)
T ss_dssp             HHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEEEEEEECSSSEE
T ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccCcceEEEEEEEEEeCCCEE
Confidence            4556777888889999999999999999999999999999999998888755  44555555566667777788888999


Q ss_pred             EEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         81 LMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        81 LL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      ||+||.. +.|+|.|+||||++++| ++++|+.||++||+|+.+...++++
T Consensus       255 LL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~  304 (369)
T 3fsp_A          255 LIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIV  304 (369)
T ss_dssp             EEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCC
T ss_pred             EEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccc
Confidence            9999975 46899999999999999 9999999999999999887665444

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.75  E-value=5.1e-18  Score=118.97  Aligned_cols=71  Identities=55%  Similarity=0.965  Sum_probs=62.6

Q ss_pred             CcccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         63 KTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .....++++++++++++|||++|.+.+++|.|+||||++++||++++||.||++||||+.+...+++++..
T Consensus        17 ~~~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~   87 (156)
T 3gg6_A           17 KNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEE   87 (156)
T ss_dssp             TTCEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEc
Confidence            34556777778888899999999876678999999999999999999999999999999999888888754

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.74  E-value=1.5e-17  Score=116.30  Aligned_cols=71  Identities=38%  Similarity=0.600  Sum_probs=61.9

Q ss_pred             CcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         63 KTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+.+..+++++++.+++|||++|..  ..++|.|+||||++++||++.+||.||++||||+.+...+++++..
T Consensus         5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   77 (153)
T 3grn_A            5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVN   77 (153)
T ss_dssp             SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEE
T ss_pred             CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEE
Confidence            3456677788888888999999985  4578999999999999999999999999999999999888887653

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.72  E-value=3.9e-17  Score=115.20  Aligned_cols=68  Identities=34%  Similarity=0.486  Sum_probs=58.9

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+..+++++++ +++|||++|.+.+++|.|+||||++++||++.+||.||++||||+.+...+++++..
T Consensus        28 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   95 (157)
T 4dyw_A           28 PRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVD   95 (157)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEE
T ss_pred             ceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEE
Confidence            45566666766 689999999876678999999999999999999999999999999999888887654

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.72  E-value=2.8e-17  Score=116.92  Aligned_cols=85  Identities=35%  Similarity=0.547  Sum_probs=55.5

Q ss_pred             CCCCCCCCCccccccccccCCCCCCccccccCCcccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHH
Q psy10892         31 DGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEA  110 (135)
Q Consensus        31 ~~~~~c~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~a  110 (135)
                      +..+.|.+|+....|.               .......+++++++ +++|||++|...  +|.|+||||++++||++++|
T Consensus         3 ~~~~~~~~~~~~~~~~---------------~~~~~~~v~~ii~~-~~~vLL~~r~~~--~~~w~~PgG~ve~gEs~~~a   64 (171)
T 3id9_A            3 LEGFICKFNRKRRLYI---------------ENIMQVRVTGILIE-DEKVLLVKQKVA--NRDWSLPGGRVENGETLEEA   64 (171)
T ss_dssp             ----------------------------------CEEEEEEEEEE-TTEEEEEECSST--TCCEECCEEECCTTCCHHHH
T ss_pred             ccccccccChhhhhcc---------------CCceEEEEEEEEEE-CCEEEEEEEECC--CCeEECCCccCCCCCCHHHH
Confidence            4456777776644331               12244455565655 479999998764  68999999999999999999


Q ss_pred             HHHHHHHHHCCccccceEEEEEe
Q psy10892        111 VKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus       111 a~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      |+||++||||+.+...+++++..
T Consensus        65 a~REl~EEtGl~~~~~~~~~~~~   87 (171)
T 3id9_A           65 MIREMREETGLEVKIKKLLYVCD   87 (171)
T ss_dssp             HHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHCCccccceEEEEEc
Confidence            99999999999998888877764

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.71  E-value=4.8e-17  Score=112.22  Aligned_cols=67  Identities=33%  Similarity=0.422  Sum_probs=52.5

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCC---CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSI---CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~---~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..++++++.+ +++|||+||....   ++|.|+||||++++||++.+||.||++||||+.+...+++++..
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   75 (140)
T 3gwy_A            6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVH   75 (140)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEE
Confidence            3345555555 6899999997644   78999999999999999999999999999999998888877654

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.71  E-value=2.1e-17  Score=117.06  Aligned_cols=69  Identities=29%  Similarity=0.445  Sum_probs=60.2

Q ss_pred             ccEEEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+.++.+++++++ ++|||++|.+..|.|.|+||||++++||++.+||.||++||||+.+...+++++..
T Consensus         9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   78 (161)
T 3exq_A            9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCE   78 (161)
T ss_dssp             EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEE
T ss_pred             ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEe
Confidence            5556667777766 69999999877788889999999999999999999999999999999888888754

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.71  E-value=5.8e-17  Score=116.71  Aligned_cols=69  Identities=28%  Similarity=0.447  Sum_probs=59.4

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+.++++++++++++|||++|.+..++|.|+||||++++||++++||.||++||||+.+...++++...
T Consensus        23 ~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~   91 (176)
T 3q93_A           23 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIV   91 (176)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEE
T ss_pred             CCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEE
Confidence            444555666677789999999776678999999999999999999999999999999999888887653

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.70  E-value=3.6e-17  Score=118.90  Aligned_cols=97  Identities=22%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CCCCccccccccccCCCCCCcccc-ccCCcccEEEEEEEEcCCC--eEEEEEeec--CCCCCeEEeeeEecCCCCCHHHH
Q psy10892         36 CDYDLTEQADFAPARGVIPESFVP-RLKKTVTYIVMAVIINSKN--AVLMMQEAK--SICNGAWYLPAGKVEEGETLEEA  110 (135)
Q Consensus        36 c~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~v~~~i~~~~~--~vLL~~r~~--~~~~g~w~~PgG~i~~gEs~~~a  110 (135)
                      ++-++.+..|.+...+......+. .........+++++++.++  +|||++|.+  ..++|.|+||||++++||++++|
T Consensus         3 ~p~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~a   82 (194)
T 1nqz_A            3 APHDPLDDIQADPWALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQA   82 (194)
T ss_dssp             -CCCHHHHHHTCTTCCCBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHhhcChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHH
Confidence            344556667776666654322111 1112233444455557666  899999875  34689999999999999999999


Q ss_pred             HHHHHHHHHCCccccceEEEEE
Q psy10892        111 VKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus       111 a~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      |.||++||||+++...++++..
T Consensus        83 a~REl~EEtGl~~~~~~~l~~~  104 (194)
T 1nqz_A           83 ALREAQEEVALDPAAVTLLGEL  104 (194)
T ss_dssp             HHHHHHHHHCCCGGGCEEEEEC
T ss_pred             HHHHHHHHHCCCccceEEEEEc
Confidence            9999999999999888877654

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.70  E-value=7.9e-17  Score=112.39  Aligned_cols=65  Identities=31%  Similarity=0.549  Sum_probs=54.3

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .++++ ++++++++||++|. ...+|.|.||||++++|||+++||.||++||||+++...+++++..
T Consensus         6 ~~v~~-ii~~~~~vLl~~r~-~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   70 (153)
T 3shd_A            6 VTVAC-VVHAEGKFLVVEET-INGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQ   70 (153)
T ss_dssp             EEEEE-EEEETTEEEEEEEE-ETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_pred             eEEEE-EEEeCCEEEEEEec-CCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEE
Confidence            33444 44556899999987 3346899999999999999999999999999999999988888763

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.70  E-value=8.4e-17  Score=113.82  Aligned_cols=67  Identities=28%  Similarity=0.506  Sum_probs=53.0

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecC--CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .+..+++++++.+++|||++|...  .++|.|+||||++++||++++||.||++||||+.+...+++++
T Consensus        26 ~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~   94 (165)
T 3oga_A           26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPW   94 (165)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred             ceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeee
Confidence            344455556666789999998743  5789999999999999999999999999999999987776653

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.70  E-value=7.9e-17  Score=111.04  Aligned_cols=68  Identities=32%  Similarity=0.561  Sum_probs=57.7

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ....++++++++.+++|||+||.. +.++|.|+||||++++||++.+||.||++||||+.+...++..+
T Consensus         6 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~   74 (144)
T 3r03_A            6 PILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPL   74 (144)
T ss_dssp             CEEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE
T ss_pred             ceeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEE
Confidence            345566777788888999999974 55889999999999999999999999999999999988754444

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.69  E-value=1.1e-16  Score=112.05  Aligned_cols=70  Identities=33%  Similarity=0.548  Sum_probs=59.0

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeec----CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAK----SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~----~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..+..++++++++++++||++|..    ..++|.|+||||++++||++.+||.||++||||+.+...++++...
T Consensus        11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~   84 (159)
T 1sjy_A           11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYL   84 (159)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEE
T ss_pred             eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEe
Confidence            345566777788788999999874    3367999999999999999999999999999999998877777654

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.69  E-value=5.5e-17  Score=112.32  Aligned_cols=62  Identities=29%  Similarity=0.516  Sum_probs=51.7

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ..++++++++ +++|||+||.    .|.|.||||++++|||+.+||.||++||||+.+...++++..
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~----~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~   65 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP----SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEI   65 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT----TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC----CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeee
Confidence            3455566665 4799999875    378999999999999999999999999999999887777653

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.69  E-value=1.3e-16  Score=111.70  Aligned_cols=68  Identities=26%  Similarity=0.475  Sum_probs=57.7

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc--cceEEEEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA--PTTLLAVE  132 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~--~~~~~~~~  132 (135)
                      ....+++++++.+++|||++|.+.+++|.|+||||++++||++.+||.||++||||+.+.  ..+++++.
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~   86 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW   86 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEE
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEE
Confidence            445677788887889999999876678999999999999999999999999999999864  45666554

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.68  E-value=3.2e-16  Score=113.87  Aligned_cols=67  Identities=36%  Similarity=0.456  Sum_probs=56.5

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..++++++++ +++|||++|.+.+..|.|+||||++++||++++||+||++||||+.+....++++..
T Consensus        40 ~~~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~  106 (189)
T 3cng_A           40 KVIVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYS  106 (189)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             ceEEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEe
Confidence            3455666666 679999999876567899999999999999999999999999999988777777643

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.68  E-value=1.7e-16  Score=110.11  Aligned_cols=67  Identities=34%  Similarity=0.479  Sum_probs=57.2

Q ss_pred             cEEEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +..+++++++.+++|||++|.. +.++|.|+||||++++||++.+||.||+.||||+.+....++++.
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~   88 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLAC   88 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEE
Confidence            4455556667778999999975 467899999999999999999999999999999999888877664

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.68  E-value=1.2e-16  Score=112.21  Aligned_cols=68  Identities=32%  Similarity=0.591  Sum_probs=57.5

Q ss_pred             cccEEEEEEEEcCCCeEEEEEee-cCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEA-KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~-~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ....++++++++.+++|||++|. .+.++|.|+||||++++||++.+||.||++||||+.+...++..+
T Consensus        27 ~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   95 (158)
T 3hhj_A           27 SLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPL   95 (158)
T ss_dssp             CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE
T ss_pred             ceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEE
Confidence            34556667777888999999987 456889999999999999999999999999999999988765433

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.68  E-value=1e-16  Score=111.68  Aligned_cols=64  Identities=25%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      +.+++++++++++++||+++.+.+ .++.|+||||++++|||+++||.||++||||+.+...+.+
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l   69 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPL   69 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEEC
T ss_pred             CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEE
Confidence            346677778888899888765433 4569999999999999999999999999999988755444

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.67  E-value=2.9e-16  Score=107.57  Aligned_cols=63  Identities=33%  Similarity=0.491  Sum_probs=53.2

Q ss_pred             EEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         70 MAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        70 ~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ++++++++++|||++|.. ..++|.|+||||++++||++++||.||++||||+.+...++++..
T Consensus        12 ~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~   75 (140)
T 2rrk_A           12 VAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASH   75 (140)
T ss_dssp             EEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEE
T ss_pred             EEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEE
Confidence            334446678999999864 457899999999999999999999999999999999877777654

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.66  E-value=2.5e-16  Score=106.25  Aligned_cols=62  Identities=39%  Similarity=0.562  Sum_probs=54.6

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ..++++++++++++||+||++    |.|+||||++++||++.+||.||++||||+.+...++++..
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~----g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~   64 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT   64 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC----CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEE
Confidence            456778888888999999864    78999999999999999999999999999999887777664

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.66  E-value=2.9e-16  Score=117.71  Aligned_cols=69  Identities=23%  Similarity=0.331  Sum_probs=58.6

Q ss_pred             ccEEEEEEEE---cCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVII---NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~---~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ....++++|+   +++++|||++|...+++|.|.+|||++++|||+++||.||++||||+.+...+.+++..
T Consensus        12 p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~   83 (226)
T 2fb1_A           12 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG   83 (226)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence            4556666666   55679999999876778999999999999999999999999999999998777777653

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.66  E-value=1.4e-16  Score=112.12  Aligned_cols=61  Identities=30%  Similarity=0.345  Sum_probs=52.2

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      .+.++++++++ +++|||++|++   +|.|.||||++++|||+.+||+||++||||+.+...+++
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   65 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI   65 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS---SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCC
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC---CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccc
Confidence            45566777777 57999999875   589999999999999999999999999999988765544

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.66  E-value=2.8e-16  Score=109.25  Aligned_cols=61  Identities=33%  Similarity=0.480  Sum_probs=51.8

Q ss_pred             EEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        72 ~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +++.++++|||++|.+...+|.|+||||++++||++++||.||++||||+.+...+++++.
T Consensus        13 ~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   73 (153)
T 2b0v_A           13 AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIY   73 (153)
T ss_dssp             EECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             EEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEE
Confidence            3344568999999875433789999999999999999999999999999999888877765

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.66  E-value=3.5e-16  Score=109.91  Aligned_cols=55  Identities=33%  Similarity=0.474  Sum_probs=47.9

Q ss_pred             cCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         75 NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        75 ~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +++.++||+||+++  +|.|.||||++++|||+.+||.||++||||+.+....+++.
T Consensus        21 n~~~e~LL~~r~~~--~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~   75 (155)
T 3u53_A           21 NNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEG   75 (155)
T ss_dssp             SCSEEEEEEEESSS--SCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             CCCcEEEEEEecCC--CCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeee
Confidence            45568999999765  47899999999999999999999999999999887766654

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.66  E-value=5.8e-16  Score=106.50  Aligned_cols=68  Identities=32%  Similarity=0.397  Sum_probs=54.8

Q ss_pred             ccEEEEEEEEc--CCCe--EEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEeC
Q psy10892         65 VTYIVMAVIIN--SKNA--VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA  134 (135)
Q Consensus        65 ~~~~v~~~i~~--~~~~--vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~~  134 (135)
                      ....+++++++  ++++  +||++|.+.+  +.|+||||++++|||+++||.||++||||+.+...+++++.+.
T Consensus         8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~   79 (139)
T 2yyh_A            8 PLLATDVIIRLWDGENFKGIVLIERKYPP--VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSD   79 (139)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSSS--CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_pred             CeEEEEEEEEEEcCCCcEEEEEEEecCCC--CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECC
Confidence            34455566655  5677  9999987643  3499999999999999999999999999999988888777653

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.65  E-value=5.9e-16  Score=112.08  Aligned_cols=57  Identities=32%  Similarity=0.522  Sum_probs=50.7

Q ss_pred             CCeEEEEEee-------cCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         77 KNAVLMMQEA-------KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        77 ~~~vLL~~r~-------~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +++|||++|.       ...++|.|.||||++++||++++||+||++||||+++...+++++..
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~  108 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFD  108 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEc
Confidence            3589999994       34678999999999999999999999999999999999888888754

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.64  E-value=8.9e-16  Score=105.92  Aligned_cols=60  Identities=33%  Similarity=0.483  Sum_probs=51.3

Q ss_pred             ccEEEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         65 VTYIVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        65 ~~~~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      .+..+.+++++.+ +++||++|+..  +|.|+||||++++||++.+||.||++||||+.+...
T Consensus         8 ~~~~v~~~i~~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~   68 (150)
T 2o1c_A            8 RPVSILVVIYAQDTKRVLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAE   68 (150)
T ss_dssp             CSEEEEEEEEETTTCEEEEEECSSS--TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHH
T ss_pred             CceEEEEEEEeCCCCEEEEEEecCC--CCceECCccccCCCCCHHHHHHHHHHHHhCCCcccc
Confidence            3356777777764 89999998765  689999999999999999999999999999988763

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.64  E-value=6e-16  Score=117.00  Aligned_cols=69  Identities=29%  Similarity=0.399  Sum_probs=57.7

Q ss_pred             ccEEEEEEEE---cCCCeEEEEEeecCCCCCeEEeeeEecCC--CCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVII---NSKNAVLMMQEAKSICNGAWYLPAGKVEE--GETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~---~~~~~vLL~~r~~~~~~g~w~~PgG~i~~--gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..+.+.++|+   +++++|||++|.+.+++|.|.+|||++++  |||+++||.||++||||+++...+.+++..
T Consensus        21 p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~   94 (240)
T 3gz5_A           21 QLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVG   94 (240)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEE
T ss_pred             CccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeC
Confidence            3455556655   44569999999877778999999999999  999999999999999999998777777654

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.64  E-value=5.8e-16  Score=110.64  Aligned_cols=63  Identities=32%  Similarity=0.441  Sum_probs=50.5

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..++++++..++++||++|+    +|.|.||||++++|||+++||.||++||||+.+...+.++...
T Consensus        16 ~~~~~~ii~~~~~vLL~~r~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~   78 (163)
T 3f13_A           16 ARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHI   78 (163)
T ss_dssp             EEEEEEECEETTEEEEEECC-------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_pred             eEEEEEEEEeCCEEEEEEEC----CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEe
Confidence            34445555566799999886    4899999999999999999999999999999998888777654

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.64  E-value=1.4e-15  Score=108.25  Aligned_cols=65  Identities=31%  Similarity=0.461  Sum_probs=57.1

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ..+..+++++++.+++|||++|..   +|.|.+|||++++|||+++||.||++||||+.+...++++.
T Consensus         6 ~~~~~v~~~i~~~~~~vLl~~r~~---~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~   70 (164)
T 2kdv_A            6 GYRPNVGIVICNRQGQVMWARRFG---QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAS   70 (164)
T ss_dssp             SEEEEEEEEEECTTSEEEEEEETT---CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred             CCCcEEEEEEEccCCEEEEEEEcC---CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEE
Confidence            356677888888889999998865   58999999999999999999999999999999988777765

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.63  E-value=1.6e-15  Score=108.53  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             CcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         63 KTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ...+.++++++++.+++|||++|...  .++|.|+| |||++++||++.+||+||++||||+.+.....++..
T Consensus        34 ~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~  106 (180)
T 2fkb_A           34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQF  106 (180)
T ss_dssp             TCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEE
T ss_pred             CceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEE
Confidence            34556777788888889999888643  35899999 999999999999999999999999988776666543

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.63  E-value=5.4e-16  Score=108.32  Aligned_cols=67  Identities=25%  Similarity=0.454  Sum_probs=51.9

Q ss_pred             ccEEEEEEEEcCCCe----EEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSKNA----VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~----vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+.++++++.++ ++    +||++|....|+| |.||||++++||++++||.||++||||+.+...+++++..
T Consensus         7 ~~~~~~~ii~~~-~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   77 (155)
T 2b06_A            7 TILTNICLIEDL-ETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKN   77 (155)
T ss_dssp             EEEEEEEEEEET-TTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEE
T ss_pred             cEEEEEEEEEEC-CCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEe
Confidence            455566666664 45    8888887655777 9999999999999999999999999999999888887654

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.63  E-value=7.3e-16  Score=108.07  Aligned_cols=59  Identities=29%  Similarity=0.456  Sum_probs=51.6

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA  124 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~  124 (135)
                      ..+..+++++++.+++|||++|...  +|.|++|||++++|||+++||.||++||||+.+.
T Consensus        12 ~~~~~v~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   70 (165)
T 1f3y_A           12 GYRRNVGICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             SCCCEEEEEEECTTSCEEEEEETTE--EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred             ceeeeEEEEEECCCCcEEEEecCCC--CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence            3566677888888899999998743  4899999999999999999999999999999864

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.63  E-value=1.8e-15  Score=105.09  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=44.4

Q ss_pred             cCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         75 NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        75 ~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      +++++|||++|.+.   |.|+||||++++|||+.+||.||++||||+++...
T Consensus        17 ~~~~~vLl~~r~~~---g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~   65 (149)
T 3son_A           17 EANYQFGVLHRTDA---DVWQFVAGGGEDEEAISETAKRESIEELNLDVDVK   65 (149)
T ss_dssp             SSSEEEEEEEESSS---SCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCC
T ss_pred             CCCeEEEEEEEcCC---CCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccc
Confidence            56679999998763   89999999999999999999999999999998874

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.63  E-value=4.9e-16  Score=111.71  Aligned_cols=65  Identities=29%  Similarity=0.396  Sum_probs=55.3

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      +.++++++++.++++||++|.+.+ ++|.|+||||++++|||+++||.||++||||+.+...++++
T Consensus        41 ~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~  106 (182)
T 2yvp_A           41 VAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLP  106 (182)
T ss_dssp             CEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECC
T ss_pred             CCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEE
Confidence            446777788888899999987533 57899999999999999999999999999999887666554

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=111.48  Aligned_cols=66  Identities=26%  Similarity=0.480  Sum_probs=54.8

Q ss_pred             cEEEEEEEEc-CCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIIN-SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~-~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ...+++++++ ++++|||+||+. +++|.|.||||++++||++++||.||++||||+.+...+++++.
T Consensus        26 ~v~v~~~v~~~~~~~vLL~~r~~-~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~   92 (199)
T 3h95_A           26 QVGVAGAVFDESTRKILVVQDRN-KLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIR   92 (199)
T ss_dssp             CCEEEEEEEETTTTEEEEEEESS-SSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred             cceEEEEEEeCCCCEEEEEEEcC-CCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEE
Confidence            3445455555 458999999865 35799999999999999999999999999999999888888764

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.63  E-value=8.7e-16  Score=109.13  Aligned_cols=67  Identities=28%  Similarity=0.361  Sum_probs=56.7

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecC--CCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKS--ICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +.++++++++.++++||++|...  .++|.|+ ||||++++|||+.+||.||++||||+.+...++..+.
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~  103 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLA  103 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEE
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEE
Confidence            66777888888889999998543  3689998 9999999999999999999999999999886544443

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.62  E-value=1.1e-15  Score=104.50  Aligned_cols=61  Identities=28%  Similarity=0.318  Sum_probs=49.1

Q ss_pred             EEEEEEEEcC---CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         67 YIVMAVIINS---KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        67 ~~v~~~i~~~---~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      .+++++++++   +++|||+||+.  .+|.|+||||++++||++++||.||++||||+.+...+++
T Consensus         4 ~~~~~vi~~~~~~~~~vLl~~r~~--~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~   67 (138)
T 1ktg_A            4 KAAGLVIYRKLAGKIEFLLLQASY--PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIH   67 (138)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESS--TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             EEEEEEEEEecCCCcEEEEEEccC--CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEe
Confidence            4456666654   36899999873  2579999999999999999999999999999976655443

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.62  E-value=1.1e-15  Score=110.84  Aligned_cols=65  Identities=26%  Similarity=0.430  Sum_probs=55.5

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccc-eEE
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAK--SICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPT-TLL  129 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~-~~~  129 (135)
                      .+.+++++++++++++||++|..  ..++|.|++ |||++++|||+++||.||++||||+.+... .++
T Consensus        31 ~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~   99 (190)
T 1hzt_A           31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIY   99 (190)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEE
T ss_pred             eEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheee
Confidence            44567788888888999999864  346899999 999999999999999999999999998876 444

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.62  E-value=1.4e-15  Score=112.07  Aligned_cols=64  Identities=34%  Similarity=0.550  Sum_probs=53.1

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ...+.+++++ +++|||++|..   +|.|.||||++++|||+.+||.||++||||+.+...+++++..
T Consensus        68 ~~~v~~vv~~-~~~vLLv~r~~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~  131 (205)
T 3q1p_A           68 KVDIRAVVFQ-NEKLLFVKEKS---DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFD  131 (205)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred             cceEEEEEEE-CCEEEEEEEcC---CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Confidence            3455666666 67999999874   5899999999999999999999999999999999888888764

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.62  E-value=1.9e-15  Score=110.83  Aligned_cols=65  Identities=25%  Similarity=0.393  Sum_probs=53.3

Q ss_pred             EEEEEEEE--cCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         67 YIVMAVII--NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        67 ~~v~~~i~--~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..++++++  +.+++|||++|.+.  +|.|+||||++++||++++||+||++||||+.+...+++++..
T Consensus        41 ~~~~~vi~~~~~~~~vLLv~r~~~--~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~  107 (194)
T 2fvv_A           41 KRAACLCFRSESEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFE  107 (194)
T ss_dssp             EEEEEEEESSTTCCEEEEEECSSC--TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             ccEEEEEEEECCCCEEEEEEEeCC--CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEE
Confidence            33445554  44689999998754  4899999999999999999999999999999998877777653

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.62  E-value=2.3e-15  Score=109.53  Aligned_cols=62  Identities=34%  Similarity=0.673  Sum_probs=52.9

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ++.+++.+ +++|||++|..   +|.|.+|||++++||++++||.||++||||+.+...+++++..
T Consensus         6 v~~~vi~~-~~~vLL~~r~~---~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   67 (188)
T 3fk9_A            6 VTNCIVVD-HDQVLLLQKPR---RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFS   67 (188)
T ss_dssp             EEEEEEEE-TTEEEEEECTT---TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeCC---CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEE
Confidence            44555555 57999999854   6899999999999999999999999999999999888877754

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.61  E-value=1.6e-15  Score=104.74  Aligned_cols=64  Identities=36%  Similarity=0.639  Sum_probs=53.2

Q ss_pred             ccEEEEEEEEcC-CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         65 VTYIVMAVIINS-KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        65 ~~~~v~~~i~~~-~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .+..++++++++ +++|||++|.    +|.|+||||++++||++++||.||++||||+.+...++++..
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   81 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEA   81 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC----CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEE
Confidence            344555666665 6899999973    389999999999999999999999999999999887777653

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.61  E-value=1.3e-16  Score=107.75  Aligned_cols=61  Identities=33%  Similarity=0.498  Sum_probs=51.3

Q ss_pred             EEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         70 MAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        70 ~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      +++++++++++||+||... .++|.|+||||++++||++.+||.||++||||+.+...++++
T Consensus         8 ~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~   69 (129)
T 1mut_A            8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFE   69 (129)
T ss_dssp             CEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCC
T ss_pred             EEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEE
Confidence            3445677789999998754 578999999999999999999999999999999887554443

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.60  E-value=2.2e-15  Score=107.30  Aligned_cols=63  Identities=29%  Similarity=0.405  Sum_probs=52.7

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .++++++++ ++++||+++.+.+ ++|.|+||||++++|||+++||.||++||||+ +...+.++.
T Consensus        35 ~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~   98 (170)
T 1v8y_A           35 PAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFS   98 (170)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEE
T ss_pred             CeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEE
Confidence            356667777 7899999886543 68899999999999999999999999999999 776666554

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.60  E-value=7.7e-16  Score=108.28  Aligned_cols=57  Identities=37%  Similarity=0.617  Sum_probs=48.7

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL  128 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~  128 (135)
                      ++++++++ +++|||++|.+   +|.|.||||++++|||+++||.||++||||+.+.....
T Consensus         3 ~~~~vi~~-~~~vLL~~r~~---~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~   59 (156)
T 1k2e_A            3 VTSGVLVE-NGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF   59 (156)
T ss_dssp             EEEEECEE-TTEEEEEECTT---TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC
T ss_pred             EEEEEEEE-CCEEEEEEEcC---CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccc
Confidence            45566666 78999999865   58999999999999999999999999999998876543

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.60  E-value=3.9e-15  Score=103.97  Aligned_cols=63  Identities=29%  Similarity=0.447  Sum_probs=52.6

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ..+..+++++++ +++|||++|     +|.|.||||++++||++++||.||++||||+.+...+++++.
T Consensus        17 ~~~~~~~~ii~~-~~~vLl~~r-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~   79 (154)
T 2pqv_A           17 VFGVRATALIVQ-NHKLLVTKD-----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVV   79 (154)
T ss_dssp             EEEEEEEECCEE-TTEEEEEEE-----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred             eEeEEEEEEEEE-CCEEEEEec-----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEE
Confidence            344555666665 579999998     489999999999999999999999999999999877776654

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.60  E-value=4.3e-15  Score=108.43  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=49.9

Q ss_pred             CcccEEEEEEEEcCCC-eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCc
Q psy10892         63 KTVTYIVMAVIINSKN-AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE  122 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~-~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~  122 (135)
                      ...+.+++++++++++ +|||++|+.   .|.|.||||++++|||+.+||+||++||||+.
T Consensus        42 ~~~h~~~~~vv~~~~~~~vLL~~r~~---~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~   99 (197)
T 3fcm_A           42 TIAHLTSSAFAVNKERNKFLMIHHNI---YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK   99 (197)
T ss_dssp             SSEEEEEEEEEECTTSCEEEEEEETT---TTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred             CCccEEEEEEEEECCCCEEEEEEecC---CCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence            3466777888888765 999999774   58999999999999999999999999999997

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.59  E-value=5.3e-15  Score=113.87  Aligned_cols=60  Identities=38%  Similarity=0.582  Sum_probs=51.8

Q ss_pred             EEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        72 ~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +++..+++|||+||...+ +|.|++|||++++|||+++||.||++||||+++...++++..
T Consensus       145 v~v~~~~~vLL~rr~~~~-~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~  204 (269)
T 1vk6_A          145 VAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQ  204 (269)
T ss_dssp             EEEEETTEEEEEEETTTC-SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE
T ss_pred             EEEEeCCEEEEEEecCCC-CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEE
Confidence            344456899999987654 689999999999999999999999999999999888877764

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.59  E-value=3.9e-15  Score=109.30  Aligned_cols=64  Identities=27%  Similarity=0.324  Sum_probs=53.2

Q ss_pred             EEEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ++++++++++ +|||+++.+. ..++.|+||||++++||++++||.||++||||+.+...++++..
T Consensus        51 av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~  115 (198)
T 1vhz_A           51 AVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKL  115 (198)
T ss_dssp             EEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             EEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEE
Confidence            4556666766 9999987653 35679999999999999999999999999999999877776654

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.59  E-value=3.1e-15  Score=104.84  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=54.7

Q ss_pred             cccccCCcccEEEEEEEEcC---CCeEEEEEeec-CCCCCeEEeeeEecCCCCCHH-HHHHHHHHHHHC-CccccceEE
Q psy10892         57 FVPRLKKTVTYIVMAVIINS---KNAVLMMQEAK-SICNGAWYLPAGKVEEGETLE-EAVKREVLEETG-LEMAPTTLL  129 (135)
Q Consensus        57 ~~~~~~~~~~~~v~~~i~~~---~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~-~aa~REl~EE~G-l~~~~~~~~  129 (135)
                      ..++.+......+++++.++   +++|||+||.. ..++|.|+||||++++||+++ +||.||++|||| +.+...+.+
T Consensus        10 k~~k~~~~~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l   88 (155)
T 1x51_A           10 KASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHL   88 (155)
T ss_dssp             SSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEEC
T ss_pred             cCCCCCCCeEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeec
Confidence            33334444444555555554   47999999874 468899999999999999996 999999999999 776654443

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.58  E-value=4.4e-15  Score=109.43  Aligned_cols=64  Identities=28%  Similarity=0.540  Sum_probs=54.6

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ....+.++++++ ++|||++|.    .|.|+||||++++||++.+||.||++||||+.+...+++++..
T Consensus        69 ~~~~v~~vv~~~-~~vLLvrr~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~  132 (206)
T 3o8s_A           69 PKLDTRAAIFQE-DKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILD  132 (206)
T ss_dssp             CEEEEEEEEEET-TEEEEEECT----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             CCccEEEEEEEC-CEEEEEEec----CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEe
Confidence            344555666664 799999987    5899999999999999999999999999999998888887754

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.57  E-value=4.8e-15  Score=109.25  Aligned_cols=65  Identities=26%  Similarity=0.392  Sum_probs=55.4

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecC-CCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVE-EGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~-~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .++++++++.+++|||+++.+.+ +++.|+||||+++ +||++++||.||++||||+.+...++++.
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~  110 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVD  110 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             CEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEE
Confidence            35667777888999999987543 5789999999999 99999999999999999999887766653

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.56  E-value=1.4e-14  Score=107.18  Aligned_cols=65  Identities=23%  Similarity=0.389  Sum_probs=52.8

Q ss_pred             EEEEEEEEc-CCCeEEEEEeecCC------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIIN-SKNAVLMMQEAKSI------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~-~~~~vLL~~r~~~~------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .++++++++ ++++|||+++.+.+      .++.|+||||++++||++++||.||++||||+.+...+.++.
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~  129 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS  129 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence            356666777 56899998765432      257899999999999999999999999999999987766654

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.56  E-value=2.4e-15  Score=112.23  Aligned_cols=71  Identities=23%  Similarity=0.343  Sum_probs=53.0

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeecCC----CCCeEEe-eeEecCCCCC--H----HHHHHHHHHHHHCCccccceEEEEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAKSI----CNGAWYL-PAGKVEEGET--L----EEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~~~----~~g~w~~-PgG~i~~gEs--~----~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ..+.++..+++.+++++||++|.+..    .+|.|.+ |||++++|||  +    ++||+||++||||+++...+++++.
T Consensus        65 ~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~  144 (211)
T 3e57_A           65 TTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLI  144 (211)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEE
Confidence            34445555566667899999997543    4578998 9999999998  4    9999999999999999888898887


Q ss_pred             eC
Q psy10892        133 TA  134 (135)
Q Consensus       133 ~~  134 (135)
                      +.
T Consensus       145 ~~  146 (211)
T 3e57_A          145 NS  146 (211)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.8e-15  Score=103.73  Aligned_cols=55  Identities=29%  Similarity=0.559  Sum_probs=47.1

Q ss_pred             EEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         68 IVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        68 ~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ++++++++++ ++|||++|..   +|.|.||||++++|||+++||.||++||||+.+..
T Consensus         6 ~~~~~i~~~~~~~vLl~~r~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   61 (146)
T 2jvb_A            6 VRGAAIFNENLSKILLVQGTE---SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD   61 (146)
T ss_dssp             CEEEEEBCTTSSEEEEECCSS---SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred             EEEEEEEeCCCCEEEEEEEcC---CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence            3556666665 8999998764   58999999999999999999999999999998764

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.55  E-value=1.5e-14  Score=105.41  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=51.2

Q ss_pred             EEEEEEEEcC-CCeEEEEEeecCC-------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         67 YIVMAVIINS-KNAVLMMQEAKSI-------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        67 ~~v~~~i~~~-~~~vLL~~r~~~~-------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      .+++++++++ ++++||+++.+.+       .++.|+||||+++ ||++++||.||++||||+.+...+.++.
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~  117 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFE  117 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEE
Confidence            3456666664 5899999876422       4689999999999 9999999999999999999987776664

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.54  E-value=4.6e-14  Score=108.44  Aligned_cols=67  Identities=28%  Similarity=0.457  Sum_probs=52.9

Q ss_pred             cEEEEEEEEc--C---CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         66 TYIVMAVIIN--S---KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        66 ~~~v~~~i~~--~---~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ...+.++++.  +   +++|||++|.+.+++|.|.+|||++++||++++||.||++||||+.+....+..+.
T Consensus        39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~  110 (273)
T 2fml_A           39 SLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH  110 (273)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEE
T ss_pred             ceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEE
Confidence            3445555543  2   34899999987777899999999999999999999999999999877655444443

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.53  E-value=2.1e-14  Score=111.95  Aligned_cols=61  Identities=31%  Similarity=0.376  Sum_probs=52.0

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      .+.++.++++ ++++|||++|.+.+++|.|++|||++++||++++||.||++||||+++...
T Consensus       202 ~~~~v~~vi~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~  262 (341)
T 2qjo_A          202 TFITTDAVVV-QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLP  262 (341)
T ss_dssp             CEEEEEEEEE-ETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHH
T ss_pred             CceEEEEEEE-eCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccc
Confidence            4455666666 467999999987666899999999999999999999999999999998754

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.53  E-value=2.2e-14  Score=112.53  Aligned_cols=60  Identities=32%  Similarity=0.496  Sum_probs=51.4

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ....+.++++ ++++|||++|.+.+++|.|+||||++++|||+++||.||++||||+++..
T Consensus       207 ~~~~v~~vv~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~  266 (352)
T 2qjt_B          207 NFVTVDALVI-VNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTH  266 (352)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCH
T ss_pred             CceEEEEEEE-ECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCccc
Confidence            4455666666 56799999998766679999999999999999999999999999998874

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.51  E-value=2.4e-14  Score=110.12  Aligned_cols=57  Identities=25%  Similarity=0.496  Sum_probs=48.7

Q ss_pred             EEEEEEEEcC-CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         67 YIVMAVIINS-KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        67 ~~v~~~i~~~-~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      .+++++++++ +++|||++|.+.  +|.|++|||++++||++++||+||++||||+++..
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~~--~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~  159 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS  159 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESST--TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             CeEEEEEEECCCCEEEEEEEeCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee
Confidence            3456666665 489999998654  58899999999999999999999999999998875

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.47  E-value=7.8e-14  Score=104.29  Aligned_cols=66  Identities=24%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             cEEEEEEEEc-CCCeEEEEEeecCC-C-------------------------------CCeEEeeeEecCC-CCCHHHHH
Q psy10892         66 TYIVMAVIIN-SKNAVLMMQEAKSI-C-------------------------------NGAWYLPAGKVEE-GETLEEAV  111 (135)
Q Consensus        66 ~~~v~~~i~~-~~~~vLL~~r~~~~-~-------------------------------~g~w~~PgG~i~~-gEs~~~aa  111 (135)
                      +.+|++++++ .++++||+++.+.+ +                               ++.|+||+|++++ |||+++||
T Consensus        36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA  115 (218)
T 3q91_A           36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA  115 (218)
T ss_dssp             CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred             CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence            4566777777 45789998865422 1                               5799999999999 99999999


Q ss_pred             HHHHHHHHCCcc--ccceEEEE
Q psy10892        112 KREVLEETGLEM--APTTLLAV  131 (135)
Q Consensus       112 ~REl~EE~Gl~~--~~~~~~~~  131 (135)
                      +||++||||+.+  .....++.
T Consensus       116 ~REl~EEtGl~~~~~~l~~l~~  137 (218)
T 3q91_A          116 CKEAWEECGYHLAPSDLRRVAT  137 (218)
T ss_dssp             HHHHHHHHCBCCCGGGCEEEEE
T ss_pred             HHHHHHHhCCccccCceEEEEE
Confidence            999999999998  44454443

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.46  E-value=1.3e-13  Score=101.85  Aligned_cols=52  Identities=27%  Similarity=0.368  Sum_probs=43.7

Q ss_pred             CeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         78 NAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        78 ~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      ++|||+++.+.+ .++.|+||||++++||++++||.||++||||+.+...+++
T Consensus        77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l  129 (212)
T 2dsc_A           77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECS  129 (212)
T ss_dssp             CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             cEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEe
Confidence            489998865433 4568999999999999999999999999999988765554

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.43  E-value=1.3e-13  Score=102.11  Aligned_cols=50  Identities=34%  Similarity=0.532  Sum_probs=43.8

Q ss_pred             EEcCCCeEEEEEeecCCCCCeEEeeeEecCCCC-CHHHHHHHHHHHHHCCccccc
Q psy10892         73 IINSKNAVLMMQEAKSICNGAWYLPAGKVEEGE-TLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        73 i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gE-s~~~aa~REl~EE~Gl~~~~~  126 (135)
                      ++++++++||++|    ++|.|+||||++++|| ++++||.||++||||+.+...
T Consensus        51 i~~~~~~vLl~~r----~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~  101 (212)
T 1u20_A           51 RVPIRRVLLMMMR----FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV  101 (212)
T ss_dssp             TEECCEEEEEEEE----TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             EEecCCEEEEEEe----CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcccc
Confidence            3466678988887    3689999999999999 999999999999999998754

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.40  E-value=1.5e-12  Score=98.27  Aligned_cols=62  Identities=15%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             CcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCC------CC---HHHHHHHHHHHHHCCccc
Q psy10892         63 KTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEG------ET---LEEAVKREVLEETGLEMA  124 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~g------Es---~~~aa~REl~EE~Gl~~~  124 (135)
                      ...+.++.+++++.++++||+||+.  ..++|.|++| ||++++|      |+   +++||+||++||||+.+.
T Consensus        56 g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~  129 (235)
T 2dho_A           56 GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLE  129 (235)
T ss_dssp             TCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGG
T ss_pred             CceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence            4467788888999889999999874  3478999999 5999999      77   599999999999999865

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.39  E-value=4.8e-13  Score=106.12  Aligned_cols=56  Identities=30%  Similarity=0.391  Sum_probs=48.7

Q ss_pred             cCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         75 NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        75 ~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +++.+|||++|..   .|.|+||||++++|||+++||.||++||||+++...+++++..
T Consensus        35 ~~~~~vLLv~r~~---~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~   90 (364)
T 3fjy_A           35 LDSIEVCIVHRPK---YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVE   90 (364)
T ss_dssp             HTTEEEEEEEETT---TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC
T ss_pred             CCceEEEEEEcCC---CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEE
Confidence            4456999999854   4899999999999999999999999999999998888777643

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.37  E-value=1.4e-12  Score=99.07  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             CcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEeee-EecCCC------CCH---HHHHHHHHHHHHCCccc
Q psy10892         63 KTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLPA-GKVEEG------ETL---EEAVKREVLEETGLEMA  124 (135)
Q Consensus        63 ~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~Pg-G~i~~g------Es~---~~aa~REl~EE~Gl~~~  124 (135)
                      ...+.++.+++++.++++||+||+.  ..++|.|++|+ |++++|      |++   ++||+||++||||+.+.
T Consensus        67 g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~  140 (246)
T 2pny_A           67 GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGE  140 (246)
T ss_dssp             TCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTT
T ss_pred             CcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCcc
Confidence            3467788888899889999999874  34799999985 999999      887   99999999999999865

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.28  E-value=1.1e-11  Score=96.81  Aligned_cols=64  Identities=19%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CCcccEEEEEEEEcCCC---eEEEEEeec--CCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         62 KKTVTYIVMAVIINSKN---AVLMMQEAK--SICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        62 ~~~~~~~v~~~i~~~~~---~vLL~~r~~--~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ..-.++++.+.+++.++   ++||+||+.  ..|+|.|. +++|++++||++.+||.||+.||+|+....
T Consensus       114 ~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~  183 (300)
T 3dup_A          114 FGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEAL  183 (300)
T ss_dssp             GTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHH
T ss_pred             cceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhh
Confidence            34567778888877766   899999973  55999995 999999999999999999999999998653

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.24  E-value=7.7e-12  Score=94.35  Aligned_cols=61  Identities=26%  Similarity=0.384  Sum_probs=47.2

Q ss_pred             ccEEEEEEEEcC--C--CeEEEEEeecCC--CCCeEEeeeEecCCCCC--------------------HHHHHHHHHHHH
Q psy10892         65 VTYIVMAVIINS--K--NAVLMMQEAKSI--CNGAWYLPAGKVEEGET--------------------LEEAVKREVLEE  118 (135)
Q Consensus        65 ~~~~v~~~i~~~--~--~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs--------------------~~~aa~REl~EE  118 (135)
                      .+.+..++++.+  +  .+|||+||....  ++|.|.||||++|++|+                    +..||+||++||
T Consensus         7 ~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE   86 (232)
T 3qsj_A            7 IRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEE   86 (232)
T ss_dssp             EEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHH
Confidence            334444554443  2  389999998643  58999999999999886                    589999999999


Q ss_pred             HCCcccc
Q psy10892        119 TGLEMAP  125 (135)
Q Consensus       119 ~Gl~~~~  125 (135)
                      ||+.+..
T Consensus        87 ~Gl~l~~   93 (232)
T 3qsj_A           87 IGWLLAV   93 (232)
T ss_dssp             HSCCCSE
T ss_pred             hCceecc
Confidence            9997653

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.23  E-value=1.9e-11  Score=94.77  Aligned_cols=42  Identities=29%  Similarity=0.559  Sum_probs=38.5

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM  123 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~  123 (135)
                      +|||++|..   .|.|.+|||++++||++.+||+||++||||+.+
T Consensus       140 ~vLl~~r~~---~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~  181 (292)
T 1q33_A          140 QFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEECTT---TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEecC---CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCcc
Confidence            699998865   389999999999999999999999999999973

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.18  E-value=1.6e-11  Score=91.58  Aligned_cols=43  Identities=35%  Similarity=0.536  Sum_probs=37.7

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCC-CHHHHHHHHHHHHHCCcccc
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGE-TLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gE-s~~~aa~REl~EE~Gl~~~~  125 (135)
                      ++||+.|.    +|.|+||||++++|| ++++||.||++||||+.+..
T Consensus        66 ~~ll~~r~----~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~  109 (217)
T 2xsq_A           66 AILMQMRF----DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAA  109 (217)
T ss_dssp             EEEEEEET----TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGG
T ss_pred             cEEEEEcc----CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCcc
Confidence            56666554    588999999999999 99999999999999998873

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.18  E-value=1.2e-10  Score=86.07  Aligned_cols=50  Identities=28%  Similarity=0.419  Sum_probs=41.5

Q ss_pred             EEEEEEEcCCC--eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCC
Q psy10892         68 IVMAVIINSKN--AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL  121 (135)
Q Consensus        68 ~v~~~i~~~~~--~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl  121 (135)
                      +.+++++++++  +|||+|+..    +.|.+|||++++||+.++|+.||+.||+|+
T Consensus        61 V~avil~~~~~~phVLLlq~~~----~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           61 VEGVLIVHEHRLPHVLLLQLGT----TFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             EEEEEEEEETTEEEEEEEEEET----TEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             EEEEEEEcCCCCcEEEEEEcCC----CcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            44444555444  799999853    689999999999999999999999999994

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.01  E-value=1.3e-10  Score=85.52  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=33.7

Q ss_pred             CCeEEeeeEecCCCC-CHHHHHHHHHHHHHCC-ccccceEEEE
Q psy10892         91 NGAWYLPAGKVEEGE-TLEEAVKREVLEETGL-EMAPTTLLAV  131 (135)
Q Consensus        91 ~g~w~~PgG~i~~gE-s~~~aa~REl~EE~Gl-~~~~~~~~~~  131 (135)
                      +|.|+||||+||+|| |+++|+.||+.||+|+ .+...+++..
T Consensus        53 ~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s   95 (214)
T 3kvh_A           53 DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSS   95 (214)
T ss_dssp             TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEE
T ss_pred             CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEE
Confidence            489999999999999 9999999999999996 5666555543

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.86  E-value=3e-09  Score=83.60  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=45.2

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHH-CCccccceEEEEEeC
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET-GLEMAPTTLLAVETA  134 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~-Gl~~~~~~~~~~~~~  134 (135)
                      .++++++ ..+++|||+  .+   .| |.+|||.++.+++  ++|.||++||+ |+++....+++|+..
T Consensus       184 ~~vgaii-~~~g~vLL~--~~---~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~~~~L~~v~~~  243 (321)
T 3rh7_A          184 IRLGAVL-EQQGAVFLA--GN---ET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVTIGFLYSVYED  243 (321)
T ss_dssp             EEEEEEE-ESSSCEEEB--CS---SE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEEEEEEEEEEEC
T ss_pred             ceEEEEE-EECCEEEEe--eC---CC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEeeceEEEEEEc
Confidence            3444544 556899999  22   57 9999887655444  59999999997 999999999999863

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}

Probab=91.14  E-value=0.017  Score=44.48  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=44.6

Q ss_pred             ccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCC
Q psy10892          2 YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVI   53 (135)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~   53 (135)
                      |.+++.+++.....-.+++.+.+|...|.+..|.|.-|+....|.+...+..
T Consensus       185 ~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~  236 (287)
T 3n5n_X          185 WGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQ  236 (287)
T ss_dssp             HHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcch
Confidence            4455677888888889999999999999999999999999999987766544

>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A

Probab=89.83  E-value=0.025  Score=41.71  Aligned_cols=53  Identities=9%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             ccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC
Q psy10892          2 YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP   54 (135)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~   54 (135)
                      +.+++.+++.......+++...+|...|....|.|+-|+....|.+...+...
T Consensus       165 ~~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~  217 (225)
T 1kg2_A          165 WSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWA  217 (225)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGG
T ss_pred             HHHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCCcc
Confidence            34556677777788889999999999999999999999999999887766553

>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2

Probab=88.85  E-value=0.041  Score=40.50  Aligned_cols=47  Identities=9%  Similarity=0.022  Sum_probs=39.0

Q ss_pred             cccccccccccccchhhHHHhhCCCcccCCCCCCCCCcccccccccc
Q psy10892          3 RYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPA   49 (135)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~   49 (135)
                      .+++..++.....-.+++...+|...|.+..|.|.-|+....|....
T Consensus       171 ~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~  217 (221)
T 1kea_A          171 ELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYE  217 (221)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHH
T ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhh
Confidence            34455577777888899999999999999999999999999997543

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1

Probab=80.27  E-value=0.4  Score=34.77  Aligned_cols=44  Identities=7%  Similarity=-0.017  Sum_probs=37.7

Q ss_pred             ccccccccccccchhhHHHhhCCCcccCCCCCCCCCcccccccc
Q psy10892          4 YSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFA   47 (135)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a   47 (135)
                      +++.+++.......+++...+|...|....|.|+-|+....|..
T Consensus       162 ~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~  205 (211)
T 2abk_A          162 KLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEY  205 (211)
T ss_dssp             HHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCC
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCC
Confidence            44556777778888999999999999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	2e-15
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-14
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	8e-13
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	2e-12
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	8e-12
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-11
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-11
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	3e-11
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-11
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	7e-10
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	3e-09
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	1e-08
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	1e-08
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-08
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	2e-08
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-07
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	4e-07
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	1e-05
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	6e-05
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	8e-05
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	2e-04
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	0.001

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 2e-15
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 65  VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
            + +   V++     VL+  + +    G W    GKV+EGET+E+  +RE+ EE+GL + 
Sbjct: 3   ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD 62

Query: 125 PTTLLAV 131
               +  
Sbjct: 63  ALHKVGQ 69

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 63.7 bits (154), Expect = 2e-14
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           + +A +I   +  L+++E           PAG +E GE++ +A  REVLEETG    P  
Sbjct: 4   VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 63

Query: 128 LLAV 131
           L  +
Sbjct: 64  LTGI 67

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 59.4 bits (143), Expect = 8e-13
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 69  VMAVIINSKNAVLMMQEA----KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
              V++N +  +L++QE          G W++P+G VE+GE  ++A  RE  EETGL + 
Sbjct: 15  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 74

Query: 125 PTTLLAV 131
           P   L  
Sbjct: 75  PVKFLGA 81

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 58.3 bits (140), Expect = 2e-12
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 54  PESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
            E F   ++ T    +  ++ NS+   L+ +       G W++P G+V++ ETLE A +R
Sbjct: 6   QEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFER 65

Query: 114 EVLEETGLEMAPTTLLAVET 133
             + E GL +  T       
Sbjct: 66  LTMAELGLRLPITAGQFYGV 85

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 56.8 bits (136), Expect = 8e-12
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 62  KKTVTYI----VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
           ++T+TY        ++   +N  +++ +A    NGA++LP G++E  ET EEA+ REVLE
Sbjct: 9   EETLTYQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLE 65

Query: 118 ETGLEMAPTTLLAV 131
           E G+ +     L  
Sbjct: 66  ELGISVEIGCYLGE 79

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 55.7 bits (133), Expect = 2e-11
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 68  IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
           IV + ++     VL+++  +    G +  P G VE  ET  EAVKRE  EETG+ + P  
Sbjct: 2   IVTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 128 LLAV 131
               
Sbjct: 59  FTYG 62

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 55.0 bits (132), Expect = 2e-11
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
            V+ N+K  VL++++      G W  P G  E GE+LEEA  REV EETG+       L
Sbjct: 7   GVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 55.8 bits (134), Expect = 3e-11
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGET-LEEAVKREVLEETGLEMAPTT 127
            +   +  +  +LMM       +G    P G V+  +  LEE +KRE+ EE G  +A   
Sbjct: 34  KLFDRVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE 89

Query: 128 LLAVET 133
           +   + 
Sbjct: 90  VTEDDY 95

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 55.2 bits (132), Expect = 3e-11
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 71  AVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
           A++++      ++++  K+  +  W  P GK+++ E+  +   REV EETG + +     
Sbjct: 7   AIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINP 64

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 7e-10
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 58  VPRLKKTVTYIVMAVIINSKNA--VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
           + R K+  +   +   ++ K+    + ++       G W +P G V+ GE +   +KRE 
Sbjct: 117 ITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREF 173

Query: 116 LEETGLEMAPTTLLAVE 132
            EE    +  T+    E
Sbjct: 174 GEEALNSLQKTSAEKRE 190

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-09
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 67  YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
             ++  + N+    L++Q +       W  P G VE GE   E   R   EE G+E    
Sbjct: 18  RCLIPKVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 127 TLL 129
           T++
Sbjct: 76  TII 78

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 60  RLKKTVTYIVMAVIINSKNAVLMMQEAKSICN-GAWYLPAGKVEEGETLEEAVKREVLEE 118
           R + T+   +  +       V+M   A        +  P G VE  E   E+V RE+ EE
Sbjct: 3   RSQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEE 62

Query: 119 TGLEMAPTTLLAVET 133
           TGL +    L+ ++ 
Sbjct: 63  TGLTIQNPQLVGIKN 77

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 49.1 bits (116), Expect = 1e-08
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 59  PRLKKTVTYIVMAVII-NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
            +   TV  +++       +  VL++Q        +W LP G V   E+ E++V RE  E
Sbjct: 34  EKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKE 93

Query: 118 ETGLEMAP 125
           ETG+ ++ 
Sbjct: 94  ETGVVISQ 101

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
            + V I   +++L+ Q  +   NG   + AG VE GETLE+AV REV+EE+G+++     
Sbjct: 5   CIIVAIRRDDSILLAQHTRH-RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY 63

Query: 129 LAV 131
           +  
Sbjct: 64  VTS 66

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 71  AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
            +   S++   ++  + S     W +P G +E  E    A  REV EE G++     L+ 
Sbjct: 16  CLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVG 75

Query: 131 V 131
           +
Sbjct: 76  I 76

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 45.2 bits (106), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           V   ++N+   +            AW +P G ++EGE    A  RE+ EETG+  
Sbjct: 17  VGICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTS 69

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 44.0 bits (103), Expect = 4e-07
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 59  PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
           P     +  I+       + ++L+++       G W L  G V++ E++++A KR + E 
Sbjct: 7   PTFYLGIDCIIFG-FNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 65

Query: 119 TGLEMAPTTLLAV 131
           TGLE      +  
Sbjct: 66  TGLENVYMEQVGA 78

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 71  AVIINSKNAVLMMQEAKSI---CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
           + + N+K  +L+ + A S             G  + GE+ E+AV R    E G+E+ P
Sbjct: 7   SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 38.2 bits (88), Expect = 6e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
           V  + +     + + Q   ++      +PAG +E GE   EA +RE+ E+TGL 
Sbjct: 27  VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 8e-05
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 68  IVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
           I + +I N  N + + + A  +        P GK+E GET E+AV RE+ EE G+  
Sbjct: 6   IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 69  VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
           VM V I   + +L+ + A    +       G ++ GE++ EA  RE+ EE 
Sbjct: 51  VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEV 101

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 69  VMAVIINSKNA-VLMMQEAKSICN--GAWYLPAGKVEEGETLEEAVKREVLEET 119
           V+  +    +  VL+   +  +    G    P G ++ GET  +A  RE  EE 
Sbjct: 35  VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEV 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.75
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.75
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.75
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.74
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.73
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.73
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.71
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.71
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.69
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.69
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.68
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.66
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.66
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.65
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.64
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.64
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.64
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.61
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.61
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.6
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.57
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.53
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.52
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.49
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.46
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.37
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.26
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.14
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.13
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.04
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	94.3
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	92.98
d1rrqa1	221	Catalytic domain of MutY {Bacillus stearothermophi	92.95
d2abka_	211	Endonuclease III {Escherichia coli [TaxId: 562]}	89.26
d1orna_	214	Endonuclease III {Escherichia coli [TaxId: 562]}	86.66

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.1e-18  Score=120.58  Aligned_cols=62  Identities=29%  Similarity=0.529  Sum_probs=55.4

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccce
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT  127 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~  127 (135)
                      ...+.++|.+.+++|||++|++.+++|.|.+|||++++|||+++||+||++||||+++....
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~   79 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITA   79 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGG
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeee
Confidence            45677788888889999999887888999999999999999999999999999999877543

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=120.84  Aligned_cols=67  Identities=28%  Similarity=0.453  Sum_probs=57.1

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+++++++..+++|||++|++..+.|.|.+|||++++|||+.+||.||++||||+++...+++++..
T Consensus         5 r~~~~v~i~~~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~   71 (156)
T d1irya_           5 RLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIV   71 (156)
T ss_dssp             EEEEEECEECSSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEE
Confidence            3445555566789999999877778999999999999999999999999999999998887777643

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=1.9e-18  Score=118.66  Aligned_cols=67  Identities=34%  Similarity=0.456  Sum_probs=56.7

Q ss_pred             cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +..|++++ .+++++||++|.+.+..|.|.||||+++.|||+.+||+||++||||+++....++++..
T Consensus         3 ~v~va~ii-~~~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~   69 (146)
T d2b0va1           3 NVTVAAVI-EQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYH   69 (146)
T ss_dssp             EEEEEEEC-EETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred             eEEEEEEE-EeCCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEE
Confidence            34455554 45689999999887778899999999999999999999999999999998888777654

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.74  E-value=3.9e-18  Score=118.69  Aligned_cols=69  Identities=33%  Similarity=0.545  Sum_probs=59.1

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecC----CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKS----ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~----~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ...++++++++++++|||+||+..    ..+|.|+||||++++||++.+||+||++||||+++...+++++..
T Consensus        11 ~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~   83 (158)
T d1sjya_          11 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYL   83 (158)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEE
T ss_pred             ceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEE
Confidence            345677778888899999998643    246899999999999999999999999999999999888887654

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.73  E-value=6.4e-18  Score=119.21  Aligned_cols=60  Identities=28%  Similarity=0.452  Sum_probs=53.1

Q ss_pred             ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892         65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT  126 (135)
Q Consensus        65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~  126 (135)
                      .+..|+++|+|++++|||+||.+.  +|.|+||||+|++|||+++||.||++||||+++...
T Consensus        13 yR~~Vg~vI~n~~~~vLL~kR~~~--~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~   72 (165)
T d1jkna_          13 YRRNVGICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV   72 (165)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESSS--TTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEE
T ss_pred             ccccEEEEEEeCCCEEEEEEEcCC--CCcccCccceEcCCCChhHHHHHHHHHhhccccccc
Confidence            345678889999999999999764  589999999999999999999999999999987654

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.73  E-value=7.5e-18  Score=117.27  Aligned_cols=69  Identities=25%  Similarity=0.344  Sum_probs=57.7

Q ss_pred             ccEEEEEEEE--cC-CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVII--NS-KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~--~~-~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..+.|.++++  ++ +.+|||++|+..++.|.|.+|||++++|||+++||.||++||||+++...+.+++..
T Consensus         9 ~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~   80 (147)
T d2fb1a2           9 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG   80 (147)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred             cceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEec
Confidence            4555666654  33 347999999887788999999999999999999999999999999988888887754

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.3e-17  Score=112.79  Aligned_cols=62  Identities=39%  Similarity=0.558  Sum_probs=54.1

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +.++++++++++++||++++    .|.|.||||++++|||+.+||.||++||||+++.....++..
T Consensus         3 v~agavv~~~~~~vLl~~~~----~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~   64 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT   64 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECT----TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEcC----CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeee
Confidence            56788899998999998864    378999999999999999999999999999998877666543

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.1e-17  Score=115.62  Aligned_cols=64  Identities=27%  Similarity=0.408  Sum_probs=56.4

Q ss_pred             cEEEEEEEEcCCCeEEEEEeec--CCCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         66 TYIVMAVIINSKNAVLMMQEAK--SICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        66 ~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      |+++.++|+|+++++||+||+.  ..++|.|.+ |||++++|||+.+||+||+.||||+++...+.+
T Consensus         2 Hra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~   68 (153)
T d1hzta_           2 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI   68 (153)
T ss_dssp             EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE
T ss_pred             ceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccce
Confidence            5678899999999999999974  357999987 999999999999999999999999998776544

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.4e-18  Score=116.41  Aligned_cols=65  Identities=32%  Similarity=0.469  Sum_probs=54.5

Q ss_pred             EEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +++++++++++++||+||.. ..++|.|+||||+++.|||+.+||.||++||||+.+...++++..
T Consensus         6 vav~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~   71 (129)
T d1puna_           6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKL   71 (129)
T ss_dssp             EEEEECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEE
T ss_pred             EEEEEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEE
Confidence            34455677888999999875 346899999999999999999999999999999998877665543

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.1e-17  Score=111.74  Aligned_cols=64  Identities=34%  Similarity=0.543  Sum_probs=52.3

Q ss_pred             EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .|.+++. +++++||++|++.. +|.|++|||++++|||+++||.||++||||+++....+++...
T Consensus         5 aViv~i~-~~~~vLL~~~~~~~-~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~   68 (131)
T d1vk6a2           5 CIIVAIR-RDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQP   68 (131)
T ss_dssp             EEEEEEE-ETTEEEEEEETTTC-SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEE
T ss_pred             EEEEEEE-eCCEEEEEEeccCC-CCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEec
Confidence            3444444 45799999886543 6899999999999999999999999999999998877776643

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.68  E-value=5.9e-17  Score=112.90  Aligned_cols=65  Identities=29%  Similarity=0.471  Sum_probs=51.5

Q ss_pred             EEEEEEc-CCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         69 VMAVIIN-SKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        69 v~~~i~~-~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..++|++ +++++||++|... ...|.|+||||++++|||+++||.||++||||+.+...+++++.+
T Consensus        11 ~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~   77 (155)
T d2b06a1          11 NICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKN   77 (155)
T ss_dssp             EEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEE
Confidence            3444555 5568998888643 334679999999999999999999999999999999988888754

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.66  E-value=3.4e-16  Score=114.06  Aligned_cols=55  Identities=31%  Similarity=0.527  Sum_probs=50.3

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      +|||+||++.++.|.|.+|||++++|||+.+||.||++||||+.+....+.++.+
T Consensus        55 ~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~~  109 (202)
T d2fmla2          55 KVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHS  109 (202)
T ss_dssp             EEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEE
T ss_pred             EEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeeeee
Confidence            7999999988888999999999999999999999999999999988777766654

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.66  E-value=1.9e-16  Score=111.23  Aligned_cols=70  Identities=27%  Similarity=0.372  Sum_probs=57.2

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      ..+.++.++++++++++||+||+.  ..++|.|.+| ||++++|||+.+||.||++||||+++....++.+..
T Consensus        26 ~~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~   98 (162)
T d2o5fa1          26 ERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLAS   98 (162)
T ss_dssp             GGSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEE
T ss_pred             CeEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEE
Confidence            466788889999999999998863  4589999866 999999999999999999999999998877766543

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.8e-16  Score=110.26  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             cccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         64 TVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        64 ~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      ..+.++.+++++++++|||+||+.  ..++|.|.+| ||++++|||+++||.||++||||+.......++.
T Consensus        28 ~~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~   98 (161)
T d2fkba1          28 LRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQ   98 (161)
T ss_dssp             CCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEE
T ss_pred             CcEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEE
Confidence            356778888999999999999874  3478999976 8999999999999999999999998776655554

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.8e-16  Score=105.60  Aligned_cols=67  Identities=24%  Similarity=0.373  Sum_probs=53.5

Q ss_pred             ccEEEEEEEEc--CCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892         65 VTYIVMAVIIN--SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET  133 (135)
Q Consensus        65 ~~~~v~~~i~~--~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~  133 (135)
                      .+..+++++++  .++.+||+++++.  +|.|.||||++++|||+++||.||++||||+.+...+++++..
T Consensus        10 ~r~~a~~vv~~~~~~~~~lL~~~~~~--~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~   78 (135)
T d2fvva1          10 YKKRAACLCFRSESEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFE   78 (135)
T ss_dssp             CEEEEEEEEESSTTCCEEEEEECSSC--TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEEecCCCEEEEEEEeCC--CCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Confidence            44456666665  3456777776554  5899999999999999999999999999999998888777654

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.64  E-value=1.4e-16  Score=110.52  Aligned_cols=56  Identities=25%  Similarity=0.532  Sum_probs=47.8

Q ss_pred             EEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         68 IVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        68 ~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ++++++++.+ ++|||+|+...  ++.|.||||+++.|||+.+||.||++||||+++..
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~--~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~   60 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS   60 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESST--TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             EEEEEEEECCCCEEEEEEEeCC--CCCEECCcccccCCCCHHHHHHHHHHHHhCCCcee
Confidence            4566777765 69999998643  57899999999999999999999999999998764

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.64  E-value=6e-17  Score=111.19  Aligned_cols=55  Identities=38%  Similarity=0.608  Sum_probs=45.8

Q ss_pred             EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccce
Q psy10892         69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT  127 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~  127 (135)
                      ++++|+. +++|||++|.+   .|.|.||||++++||++.+||.||++||||+++....
T Consensus         4 a~~vi~~-d~kvLl~~r~~---~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~   58 (152)
T d1k2ea_           4 TSGVLVE-NGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG   58 (152)
T ss_dssp             EEEECEE-TTEEEEEECTT---TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEEcC---CCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeE
Confidence            3444444 57999999864   5789999999999999999999999999999876544

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.61  E-value=7e-16  Score=105.85  Aligned_cols=63  Identities=37%  Similarity=0.640  Sum_probs=48.9

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ..+.++|+++++++||..+.+   .|.|.||||++++|||+.+||.||++||||+++...+++++.
T Consensus        18 ~~~~~vi~~~~~~~lll~~~~---~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~   80 (147)
T d2azwa1          18 YAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEA   80 (147)
T ss_dssp             CEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             CeEEEEEEECCCCEEEEEEcC---CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEE
Confidence            345566666655444444433   478999999999999999999999999999998877776654

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.61  E-value=9.7e-16  Score=110.44  Aligned_cols=65  Identities=29%  Similarity=0.416  Sum_probs=52.1

Q ss_pred             EEEEEEEc-CCCeEEEEEeecC--CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIIN-SKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~-~~~~vLL~~r~~~--~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      +|.+++.+ .+.+|||++|+..  .++|.|+||||++|+||++.+||+||++||||++....++++..
T Consensus        34 aVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l  101 (187)
T d1nqza_          34 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGEL  101 (187)
T ss_dssp             EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEEC
T ss_pred             EEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecc
Confidence            44444554 3458999999853  47999999999999999999999999999999999988888753

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=1.8e-15  Score=102.19  Aligned_cols=61  Identities=28%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             EEEEEEEc---CCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         68 IVMAVIIN---SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        68 ~v~~~i~~---~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      ++++++++   ++.++||+||++.  +|.|.+|||++++|||+.+||.||++||||+++.....+.
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~~--~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~   67 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASYP--PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHE   67 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESST--TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcCC--CCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeee
Confidence            44555543   3337899988764  5899999999999999999999999999999988765543

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=2.5e-15  Score=105.57  Aligned_cols=64  Identities=28%  Similarity=0.397  Sum_probs=50.2

Q ss_pred             EEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ++++++++ ++++||+++.+.+ ....|+||+|++|+||++++||.||++||||+.++...+..+.
T Consensus        26 aV~vl~~~-~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~l~~~~   90 (158)
T d1v8ya_          26 AVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYF   90 (158)
T ss_dssp             EEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeeeeccee
Confidence            45555555 5799999876533 4679999999999999999999999999999987654444443

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=8.8e-15  Score=105.19  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             CCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         76 SKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        76 ~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .+++++|+++.+.+ ....|+||+|++|+||++++||+||++||||+.+...++++..
T Consensus        57 ~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~  114 (186)
T d1vhza_          57 VDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKL  114 (186)
T ss_dssp             ETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             cCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceeccee
Confidence            35688898876543 4568999999999999999999999999999998887777654

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=1.2e-14  Score=105.86  Aligned_cols=66  Identities=26%  Similarity=0.372  Sum_probs=54.6

Q ss_pred             EEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecC-CCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         67 YIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVE-EGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        67 ~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~-~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      .+|+++.++++++|||+++.+.+ ....|+||+|++| +||++++||.||++||||+.+...++++..
T Consensus        39 ~~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~  106 (202)
T d1mqea_          39 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL  106 (202)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             CeEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeee
Confidence            35666677888999999886544 3458999999999 799999999999999999998877777653

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.4e-14  Score=98.03  Aligned_cols=61  Identities=30%  Similarity=0.430  Sum_probs=49.8

Q ss_pred             EEEEEEEE---------cCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892         67 YIVMAVII---------NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL  129 (135)
Q Consensus        67 ~~v~~~i~---------~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~  129 (135)
                      ..++++++         +++.++||+|+..+  .+.|.+|||++++|||+.+||.||++||||+++....++
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~--~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~   78 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTII   78 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESST--TCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEEC
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecCC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeee
Confidence            34566665         45679999998764  367999999999999999999999999999988765443

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.46  E-value=3.8e-14  Score=95.67  Aligned_cols=61  Identities=20%  Similarity=0.400  Sum_probs=46.7

Q ss_pred             EEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892         69 VMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA  130 (135)
Q Consensus        69 v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~  130 (135)
                      +++++.++++++||.||.. +.++|+|+||+|.++.+++ .+++.||++||+|+++...+.++
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~   68 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIV   68 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCE
T ss_pred             EEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccc
Confidence            4555678889999999865 5589999999999997777 78999999999999887665444

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.7e-12  Score=94.74  Aligned_cols=65  Identities=23%  Similarity=0.381  Sum_probs=50.4

Q ss_pred             EEEEEEEc-CCCeEEEEEeecCC------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892         68 IVMAVIIN-SKNAVLMMQEAKSI------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE  132 (135)
Q Consensus        68 ~v~~~i~~-~~~~vLL~~r~~~~------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~  132 (135)
                      ++++++++ +.++++|+++.+.+      ..-.|++|+|.+|+||++++||+||+.||||+.+...+.++..
T Consensus        59 ~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~  130 (209)
T d1g0sa_          59 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSF  130 (209)
T ss_dssp             EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_pred             EEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeecccc
Confidence            45555554 45789998876532      1237899999999999999999999999999998877666543

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.26  E-value=5.1e-12  Score=91.42  Aligned_cols=46  Identities=37%  Similarity=0.557  Sum_probs=37.8

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCCC-HHHHHHHHHHHHHCCccccceE
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGET-LEEAVKREVLEETGLEMAPTTL  128 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs-~~~aa~REl~EE~Gl~~~~~~~  128 (135)
                      .||+++|.    .|.|.||||++++||+ +++||.||+.||||+.+...++
T Consensus        44 ~vl~~~r~----~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l   90 (196)
T d1u20a1          44 VLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV   90 (196)
T ss_dssp             EEEEEEET----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCC
T ss_pred             EEEEEEec----CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEE
Confidence            45665553    4899999999999995 7889999999999998876543

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-11  Score=92.97  Aligned_cols=44  Identities=27%  Similarity=0.527  Sum_probs=39.9

Q ss_pred             eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892         79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP  125 (135)
Q Consensus        79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~  125 (135)
                      ++||++|++   .|.|.||||+|++||++.+||+||+.||||+.+..
T Consensus       140 qvLlIkR~d---~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~  183 (292)
T d1q33a_         140 QFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQK  183 (292)
T ss_dssp             EEEEEECTT---TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGS
T ss_pred             EEEEEEecC---CCcEeCCcccCCCCCCHHHHHHHHHHHHhCccccc
Confidence            689998866   47899999999999999999999999999997764

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.4e-10  Score=83.10  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=47.9

Q ss_pred             EEEEEEEc-CCCeEEEEEeecCC-------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892         68 IVMAVIIN-SKNAVLMMQEAKSI-------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV  131 (135)
Q Consensus        68 ~v~~~i~~-~~~~vLL~~r~~~~-------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~  131 (135)
                      +|++++++ .+++++|++..+.+       ..-.|++|+|.++ ||++++||+||+.||||+.+...+.++-
T Consensus        45 aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~  115 (189)
T d1viua_          45 GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFE  115 (189)
T ss_dssp             EEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEE
T ss_pred             EEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcce
Confidence            45566665 45789888875422       2346789999998 5678999999999999999988777664

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.3e-10  Score=77.51  Aligned_cols=62  Identities=16%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             CcccEEEEEEEEc---CCCeEEEEEee-cCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892         63 KTVTYIVMAVIIN---SKNAVLMMQEA-KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA  124 (135)
Q Consensus        63 ~~~~~~v~~~i~~---~~~~vLL~~r~-~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~  124 (135)
                      ......+.+++.+   .+++|||.||. ++.++|+|+||+|.++.+|+..+++.+|..+|.+..+.
T Consensus         9 ~~~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~   74 (142)
T d1x51a1           9 PREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLP   74 (142)
T ss_dssp             TTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCC
T ss_pred             CCEEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcc
Confidence            3344445555554   36799999996 46689999999999999999998888776666654433

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.0017  Score=46.33  Aligned_cols=53  Identities=9%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             ccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC
Q psy10892          2 YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP   54 (135)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~   54 (135)
                      +.+++.+++.......+++.+.+|...|.+..|.|+-|+....|.+...+.+.
T Consensus       165 ~~~~~~~lp~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~  217 (224)
T d1kg2a_         165 WSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWA  217 (224)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGG
T ss_pred             HHHhhccCcchhhhHHHHHHHHHhHHHccCCCCCCCCCcChhhChHhhcCCcc
Confidence            34556678888888899999999999999999999999999999888777654

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=92.98  E-value=0.0041  Score=44.14  Aligned_cols=47  Identities=9%  Similarity=0.051  Sum_probs=41.7

Q ss_pred             ccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccc
Q psy10892          2 YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAP   48 (135)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~   48 (135)
                      |.+++.+++.......+++.+.+|...|.+..|.|+-|+....|..+
T Consensus       168 ~~~~~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~y  214 (217)
T d1keaa_         168 WELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY  214 (217)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHH
T ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccCcCc
Confidence            45667889999999999999999999999999999999999988654

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.95  E-value=0.0051  Score=43.63  Aligned_cols=52  Identities=19%  Similarity=0.090  Sum_probs=45.4

Q ss_pred             cccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC
Q psy10892          3 RYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP   54 (135)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~   54 (135)
                      .+++.+++.......+++.+.+|...|.+..|.|.-|+....|.+...+.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~  215 (221)
T d1rrqa1         164 QIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAE  215 (221)
T ss_dssp             HHHHHHCCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTGGGCHHHHTTCTT
T ss_pred             HhhhhhhhcccchHHHHHHHHHHHHHcCCCCCCCCCCcChhhCHHhhcCCch
Confidence            3455677888888899999999999999999999999999999988888664

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=89.26  E-value=0.05  Score=38.06  Aligned_cols=45  Identities=7%  Similarity=-0.021  Sum_probs=38.8

Q ss_pred             ccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccc
Q psy10892          4 YSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAP   48 (135)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~   48 (135)
                      ....+++.......+++.+.+|...|.+..|.|.-|+....|...
T Consensus       162 ~~~~~~p~~~~~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~~  206 (211)
T d2abka_         162 KLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYK  206 (211)
T ss_dssp             HHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCT
T ss_pred             HHhhcCccccHHHHHHHHHHHhhhhccCCCCCCCCCCCcccCCCc
Confidence            345677778888889999999999999999999999999999654

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=86.66  E-value=0.055  Score=37.84  Aligned_cols=45  Identities=18%  Similarity=0.044  Sum_probs=39.0

Q ss_pred             ccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccc
Q psy10892          4 YSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAP   48 (135)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~   48 (135)
                      ..+.+++..+....+++.+.+|...|.+..|.|+-|+..+.|...
T Consensus       164 ~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~  208 (214)
T d1orna_         164 TLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREG  208 (214)
T ss_dssp             HHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHH
T ss_pred             hhhhcCccccHHHHHHHHHHHHHHHCcCCCCCCCCCCCcccChhh
Confidence            445677888888899999999999999999999999999999543