Psyllid ID: psy10988
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1857 | 2.2.26 [Sep-21-2011] | |||||||
| Q15643 | 1979 | Thyroid receptor-interact | yes | N/A | 0.180 | 0.169 | 0.311 | 4e-28 |
| >sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 OS=Homo sapiens GN=TRIP11 PE=1 SV=3 | Back alignment and function desciption |
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Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 203/385 (52%), Gaps = 49/385 (12%)
Query: 1487 QEREVVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRLNQNTLYNENERLKQH 1546
QE+ VV Q +ER+++ L L+ Q E T L E+ LR + E ERL+ H
Sbjct: 1536 QEKTVVFQ--------QERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNH 1587
Query: 1547 LLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVRSNQQVEALTSQVKS 1606
LL++E+ T E + AE L K+ EE++ SS+ A +AS +++ QVE+L Q+
Sbjct: 1588 LLESEDSYTREALAAEDREAKLRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQLNV 1647
Query: 1607 LTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSYA 1666
+++Q+++ +L +++ V+++ SL NLQ+VLE FQ E+ + LE Q +L +
Sbjct: 1648 VSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEK-QKQLIAEWK 1706
Query: 1667 KNNE-LTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEE-LNKKE 1724
KN E L + +LQ L EA +L +A RL++QL+ K + I+EL ++ N+L +E L+ +
Sbjct: 1707 KNAENLEGKVISLQECLDEANAALDSASRLTEQLDVKEEQIEEL-KRQNELRQEMLDDVQ 1765
Query: 1725 AKLKEVNNG--GKVDKCLVTNMIVNFLTAPSRPSRHQALQILASVIDMTPQDRQKI---- 1778
KL + N GKVDK L+ N+ + P + RH+ L+++ S++ + ++ +++
Sbjct: 1766 KKLMSLANSSEGKVDKVLMRNLFIGHFHTP-KNQRHEVLRLMGSILGVRREEMEQLFHDD 1824
Query: 1779 --GLE--------------PSQAFNPNQ------SLSEAFIQFLESES-----SPRSKAQ 1811
G+ P+ PNQ S SE F++FLE+ES P+
Sbjct: 1825 QGGVTRWMTGWLGGGSKSVPNTPLRPNQQSVVNSSFSELFVKFLETESHPSIPPPKLSVH 1884
Query: 1812 SSTPV---SRRTSSTTSPLLFPESA 1833
P+ RR T +P F ++A
Sbjct: 1885 DMKPLDSPGRRKRDTNAPESFKDTA 1909
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Binds the ligand binding domain of the thyroid receptor (THRB) in the presence of triiodothyronine and enhances THRB-modulated transcription. Golgi auto-antigen; probably involved in maintaining cis-Golgi structure. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1857 | ||||||
| 345485931 | 1560 | PREDICTED: hypothetical protein LOC10012 | 0.509 | 0.607 | 0.292 | 1e-59 | |
| 383852380 | 1497 | PREDICTED: uncharacterized protein LOC10 | 0.237 | 0.294 | 0.350 | 3e-57 | |
| 91079616 | 1231 | PREDICTED: similar to slender lobes, put | 0.352 | 0.532 | 0.305 | 5e-56 | |
| 328779679 | 1535 | PREDICTED: hypothetical protein LOC41134 | 0.241 | 0.292 | 0.326 | 8e-55 | |
| 350421329 | 1463 | PREDICTED: hypothetical protein LOC10074 | 0.229 | 0.291 | 0.323 | 2e-51 | |
| 340709950 | 1463 | PREDICTED: hypothetical protein LOC10065 | 0.251 | 0.319 | 0.312 | 2e-51 | |
| 242023727 | 1179 | conserved hypothetical protein [Pediculu | 0.167 | 0.263 | 0.404 | 8e-51 | |
| 307191658 | 1303 | Thyroid receptor-interacting protein 11 | 0.164 | 0.234 | 0.397 | 7e-50 | |
| 332030898 | 1514 | Thyroid receptor-interacting protein 11 | 0.168 | 0.206 | 0.418 | 1e-48 | |
| 357608343 | 974 | putative slender lobes protein [Danaus p | 0.225 | 0.430 | 0.328 | 2e-46 |
| >gi|345485931|ref|XP_001604465.2| PREDICTED: hypothetical protein LOC100120872 [Nasonia vitripennis] | Back alignment and taxonomy information |
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Score = 239 bits (609), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 331/1131 (29%), Positives = 561/1131 (49%), Gaps = 184/1131 (16%)
Query: 831 EASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAPVDDN--------IVIENQ 882
EAS ++ L ET++L+AE++A +S + E + AA +D IE+
Sbjct: 503 EASEERVASLETETESLQAEILALRKSKADMSSELKAIKAAIREDGGGGGVELATRIESL 562
Query: 883 QLKQN-LESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQYEDKCIEL--ES 939
+QN +S K L+ L A + I+ +EL + +E+CK D+ IEL E
Sbjct: 563 LAEQNKSKSSKDPAELLQATLDENTALR-RRIDVLESELRVSLERCKGL-DENIELIEEL 620
Query: 940 TLDAKLTDFSTKEQLNKNKMAE--LSAMLES---VQAENISIKQMNEELQALTETLKQTS 994
LD + K L+ NK E L+ + E+ V A+N + + E+L+A + L S
Sbjct: 621 KLDLENARRELKIALSNNKRLENSLTILQETKNEVDADNEVLSREKEQLEADLKLLSSGS 680
Query: 995 NTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLR-SYTHVENEL 1053
+ + D L E +++++ + KE +D L ++ NEL
Sbjct: 681 DLKKSDGDALAELREQLK----------------------KSKEEKDDLEYDIRNMRNEL 718
Query: 1054 GQYRSKVYELEQIQA-RLEAERTQWIHEFEVKTNT-----LSDLQTQ-LDTYNAKITHAA 1106
Q LEQ++A R E E+ Q +E K N S+ Q + LD + T
Sbjct: 719 DQS------LEQLEANRAEIEKLQLDNERLAKENGKLLDQFSETQKENLDKVDLLNTEMT 772
Query: 1107 LVEQELGEMKNQMQ-TLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVMKSDNASLL 1165
L++QEL K++++ T+ Y L ++E+ + LKNE + L S +K + L
Sbjct: 773 LLQQELDGNKDELEKTMRY-----LSDMEEKILT---LKNENERLNVEASKIKENEIEFL 824
Query: 1166 -----LEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELAR-------- 1212
LE+ +L TK L+A LK+L++ E + + E ++L +EL R
Sbjct: 825 KLKEQLEERSLDHTKEELDAALKKLSELEEKVSML----ESENKRLQDELIRTSDVDSEN 880
Query: 1213 ------------------RDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKD 1254
+A T + +S+E+ + ++ L+++ +++E+
Sbjct: 881 KRLVEAIEEKQKEIAKNEEEAANVTTKLKCTENYISSLEDESQILESKLAQVDQENESAK 940
Query: 1255 KTLQEMQAALE----------KHLSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNEMK 1304
K ++E++ LE K LS YQ E + L+ E L+ +L +K++ E +++
Sbjct: 941 KEIEELRQQLESERRQKEADGKELSSTYQTELDKLKGENERLKSEL---DKLLVEKRDVE 997
Query: 1305 QSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQYNLQ 1364
+ S V ++EE Q L +L +E + EI+N+K TI+ ++ + Q
Sbjct: 998 VNTR-ASSDAQVSLTEEERSQLLDQL---SEKFK--------EIENLKATISK-DKDSAQ 1044
Query: 1365 LSK------SQESSTT---LTLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNG 1415
+++ SQ S+ L L + + R ++V++V KH ES YH EI RL
Sbjct: 1045 MARETVENLSQLISSKDNELIKLNATVDMFRNERDEVVKLVQEKHNESLQYHAEIQRLTQ 1104
Query: 1416 ILSEELPKLKDLGGQVATLEKQLKTTSETLAT---KERQLAETKEQLSLAQSQLEEVTQL 1472
++S+ Q A L+K + TLA+ KE QL T+ +L + + +L+ + +
Sbjct: 1105 LISD----------QTANLQKAIAEKDATLASLQEKESQLLWTQNELQVVKQRLQNIEE- 1153
Query: 1473 MSSNDRPEADGEPAQEREVVAQHVAPVETSRERNELALRLQNLQEEKTMLLTEINDLRLN 1532
SN+ E G E ++++HV+ +E + E A+ LQ+ Q L ++ + +
Sbjct: 1154 --SNNHGERCG--IAEHTLLSKHVSTLEEKSKAMEAAI-LQD-QSNIRYLQEQLTEAQSK 1207
Query: 1533 QNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATAYTSASVR 1592
+ E +RL+ HL++ E + T E +++E+ + L +L +AEE++K+S+T YTSASVR
Sbjct: 1208 ETIALKEVDRLRNHLVEMEANYTEEALQSEEIQRTLQARLMQAEEKLKNSSTMYTSASVR 1267
Query: 1593 SNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQ 1652
+NQQVE L Q+ + +Q++ LQ K+ AED V + ASLTNLQ+VLEQFQ +K+ +I
Sbjct: 1268 ANQQVETLQQQLALIVQQRDDLQNKISSAEDKVLSYSASLTNLQLVLEQFQRDKEKDIQA 1327
Query: 1653 SLEFLQGELNNSYAKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEK 1712
+ E L+ EL SY K +EL I++L+ QL EA+E L AA RL++QL +KS+ I+ L ++
Sbjct: 1328 ATEKLRVELQQSYKKQDELVSEITSLKEQLAEAKECLRAASRLTEQLEKKSERIELLNQE 1387
Query: 1713 VNQLMEELNKKEAKLKEVNNG--GKVDKCLVTNMIVNFLTAPSRPSRHQALQILASVIDM 1770
VN+L E +N + +++E GKVD+ LV N+++ ++++P + + L++ A+V+D
Sbjct: 1388 VNRLTELVNTADQRIEEAKKSGEGKVDRSLVKNLLLGYISSP-QNDKTSVLRVFANVLDF 1446
Query: 1771 TPQDRQKIGLEPSQAFNP----------------NQSLSEAFIQFLESESSPRSKAQ--- 1811
+R+K GL S A N SLS AFI+FLESES P+ +
Sbjct: 1447 NETEREKSGLTDSAAKNSWFSSLVNSSPASSKEQEASLSSAFIKFLESESQPKPQLPALP 1506
Query: 1812 -SSTPVSRRTSSTTSPLLFPES-------ALPSLPQF-STMGSGSMLKDVL 1853
S++P+SR S S LP+ P F +GS+LK+VL
Sbjct: 1507 ISNSPISRPGHSRQHSSSSTHSTLLLSNVTLPTFPDFVPARNTGSILKEVL 1557
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383852380|ref|XP_003701706.1| PREDICTED: uncharacterized protein LOC100881350 [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|91079616|ref|XP_967067.1| PREDICTED: similar to slender lobes, putative [Tribolium castaneum] gi|270003380|gb|EEZ99827.1| hypothetical protein TcasGA2_TC002608 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|328779679|ref|XP_394822.4| PREDICTED: hypothetical protein LOC411348 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|350421329|ref|XP_003492808.1| PREDICTED: hypothetical protein LOC100741270 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|340709950|ref|XP_003393562.1| PREDICTED: hypothetical protein LOC100651552 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|242023727|ref|XP_002432282.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517705|gb|EEB19544.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|307191658|gb|EFN75132.1| Thyroid receptor-interacting protein 11 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|332030898|gb|EGI70534.1| Thyroid receptor-interacting protein 11 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|357608343|gb|EHJ65945.1| putative slender lobes protein [Danaus plexippus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1857 | ||||||
| UNIPROTKB|F1SD86 | 1975 | TRIP11 "Uncharacterized protei | 0.721 | 0.677 | 0.236 | 4.1e-68 | |
| UNIPROTKB|Q15643 | 1979 | TRIP11 "Thyroid receptor-inter | 0.722 | 0.677 | 0.228 | 2.5e-65 | |
| UNIPROTKB|E1C1F2 | 1980 | TRIP11 "Uncharacterized protei | 0.721 | 0.676 | 0.22 | 1.1e-64 | |
| UNIPROTKB|D4ABD7 | 1976 | Trip11 "Protein Trip11" [Rattu | 0.719 | 0.676 | 0.233 | 5.1e-63 | |
| UNIPROTKB|H0YJ97 | 1695 | TRIP11 "Thyroid receptor-inter | 0.709 | 0.777 | 0.226 | 2.8e-60 | |
| FB|FBgn0027287 | 1398 | Gmap "Golgi microtubule-associ | 0.626 | 0.832 | 0.239 | 3.4e-59 | |
| UNIPROTKB|E2QUU0 | 1977 | TRIP11 "Uncharacterized protei | 0.721 | 0.677 | 0.218 | 2.2e-58 | |
| ZFIN|ZDB-GENE-030131-9833 | 1984 | trip11 "thyroid hormone recept | 0.690 | 0.646 | 0.223 | 5.9e-58 | |
| TAIR|locus:2152985 | 1586 | CIP1 "COP1-interactive protein | 0.684 | 0.801 | 0.206 | 1.1e-50 | |
| UNIPROTKB|Q02224 | 2701 | CENPE "Centromere-associated p | 0.673 | 0.462 | 0.227 | 1.4e-49 |
| UNIPROTKB|F1SD86 TRIP11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Score = 667 (239.9 bits), Expect = 4.1e-68, Sum P(3) = 4.1e-68
Identities = 346/1463 (23%), Positives = 655/1463 (44%)
Query: 380 DNDKLA----TLQQENKVLNEKVSELQTQLLSVE---EALKKKE-NDLXXXXXXXXXXTG 431
DN KL L++EN +LN++ ELQT LL + E +K+ D+
Sbjct: 414 DNLKLKMHVQVLEKENSLLNQEKEELQTSLLKLNSEYEIIKRATVRDMNLDSELRDLRLN 473
Query: 432 NSTELNNLRAKCSEFEKTIVEL----KSQEELLKQALIDKENELSEWGQTNEWGSPSSSD 487
+ L +E E I EL K +E K ++ K+ +LS+ Q NE + S
Sbjct: 474 LEAKEQELNQSIAEKEILIAELEELDKQNQEATKHMILVKD-QLSK--QQNEGDNAISKL 530
Query: 488 LNTLREESGLLRQKLSEQKVIISK-LKTQLEAAQQGT---SSHSHPVDQQVQDR-ESRIE 542
L++E + Q L + K+ I+K L Q E Q + H Q+++D+ E ++
Sbjct: 531 KEDLKDEKKRVHQ-LEDDKMNITKELDVQKEKLIQSELVLNDDIHLTKQKLEDKVEDLVD 589
Query: 543 MLSREN-EGLRTRVEQLGLVIENNYVQESDPMNNSLDNTAQLTAEKERLDEEVTVLSQEN 601
L++ + + L + E L + + ++ + ++ D Q + + +L +
Sbjct: 590 QLNKSHTQNLNIQKENFEL--QEHIKRKEEELSRVRDELTQSLNQDSNSSFKDDLLKERE 647
Query: 602 IELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLE-SKDQVDDSIEKTLRNEIQELHAK 660
E++ L+Q + + + L E ++++ D E+L + + V +E+++ Q K
Sbjct: 648 AEVRN-LKQNLSEMEQLNENLKKVAFDLKTENEKLNLACEDVRHQLEESIAGNNQISLEK 706
Query: 661 LINVEAL-VNQAQVEKQALDGKYEELKE--KYEQMSEKFENQTGKDSVDIDTLIKNLQSK 717
VEAL + + Q+E + + L+E KYE+ E+ + ++ T LQ +
Sbjct: 707 NAAVEALKMEKGQLEAELCRAEKRLLEEANKYERTIEELSHAR-----NLST--SALQLE 759
Query: 718 KEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQ 777
E L +L EK+ L+ ++++K N+E Q+D T++++ L S + + ++++L N
Sbjct: 760 HERLIKLNQEKD-LEIVELKK-NIE-QMD---TDHKETKGILSSSLEE-QKQLTQLVN-- 810
Query: 778 HNKNNEINDLNKR-ISLFEENNAFLQRSILDLERNLDEKLKE-FNEKEISYNENIEASNH 835
K I L R + L EE + Q L +N E L++ EK+ S E +NH
Sbjct: 811 -EKEVFIEKLKGRNLELQEELGKYTQT----LRKN--ETLRQTIEEKDRSLGSMKEENNH 863
Query: 836 KIQQLTQ-ETDTLKAELVAQAESTQLVKQ-EQALLAAAPVDDNIVIENQQLKQNLESVKQ 893
++L + +A VA+ + V E +L + DN+ +++K + + ++
Sbjct: 864 LKEELERLREQQSRAAPVAEPKPLDSVTGLESEVLQLNVIKDNL---EKEIKHHQKVIED 920
Query: 894 ENTLVVENLQNLIAQKDY--EINAKVTELSIIMEKCKQYEDKCIE-LESTLDAKLTDFST 950
+N ++ LQ+L QK E + ++S+ + +D+ I+ L+ T++ T
Sbjct: 921 QNQSKIQLLQSLQEQKKEMDEFKYQHEQMSVSHTQLFLEKDEEIKNLQKTIEQIKTQLHE 980
Query: 951 KEQLNKNKMAELSAMLESVQAENISIKQMNEE---LQALTETLKQTSNTHEEDRKILDEY 1007
+ Q + E S + + + + ++I+ +E+ +A TE L + E + K+L+E
Sbjct: 981 ERQ---DVQTENSDIFQETKVQGLNIENGSEKHDLSKAETERLVKGIKERELEIKLLNEK 1037
Query: 1008 K-QRVQELDAKLAEEIASKTSIIQTLEIQVKELQDKLRSYTHVENELGQYRSKVYELEQI 1066
+++D +E+ T IIQ +++++ L ++ S ++ ++ VY +Q+
Sbjct: 1038 NISLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYTQDV-------VYLQQQL 1090
Query: 1067 QARLEAERTQWIHEFEVKTNTLSDLQTQ----LDTYNAKITHAALVEQELGEMKNQMQTX 1122
QA ER Q + KT S L+T+ +D AK AAL +L + ++ T
Sbjct: 1091 QA-YAMEREQVLAVLSEKTRENSQLKTEYHKMMDIVAAK--EAAL--NKLQDENKKLSTR 1145
Query: 1123 XXXXXXXXXXXXXXSIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQL 1182
+++ + +++ DA S ++L NT E Q
Sbjct: 1146 FESSGQDMFRETVQNLSRIIREKDIEI--DALSQKCQTLLTVLQTSNTSDEVGGVNSNQF 1203
Query: 1183 KELADNETQYKQMQIVYEDTQRKLN---EELARRDATIAT-LNTTGAPDLNASIENILKE 1238
+EL + KQ E+ ++++ + + A + L+ A L S N +
Sbjct: 1204 EELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNNSKLQ 1263
Query: 1239 KDAT-LSEMLKKSEAKDKTLQEMQAALEKHLSEKYQFEKEALELRTEDLEYKLQEKEKMI 1297
D T L + +++E K K + A ++ + + K+ L + + + +L +
Sbjct: 1264 VDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCN-TKDLLLGKLDIISPQLPSGASLT 1322
Query: 1298 QELNEMKQSFFIGDSKDSVRYSDEE---HVQE----LRELQLMNESLQNEVLR-SATEID 1349
+ E ++ S DS + EE +QE +R LQ N L + + S E
Sbjct: 1323 SQSAESLRTITSDVSSDSSKQEIEELRKSLQEKDETIRTLQENNHRLSDSIAATSELERK 1382
Query: 1350 NMKETITYLEQYNXXXXXXXXXXXXXXXXXXXXXXXR-TLNQQLVQIVNTKHTESNNYHQ 1408
++T + ++Q +LN+ VN E+ Q
Sbjct: 1383 EHEQTDSEIKQLKEKQDVLQKSLKEKDLLIKAKSDQLLSLNENFTNKVN----ENELLRQ 1438
Query: 1409 EILRLNG---ILSEELPKLKDLGGQVATL----EKQLKTTSETLATKERQLAETK-EQLS 1460
+ L IL ++ KLK ++ E + + ET A L E + E S
Sbjct: 1439 AVTNLKERILILEMDICKLKGENEKIVETSRGKETEYQALQETNAKFSMMLREKEFECHS 1498
Query: 1461 LAQSQLEEVTQLMSSNDRPEADGEPAQEREVV-AQHVAPVETSRERNELALRLQNLQEEK 1519
L + L QL+ ++ + GE Q V + + +ER+++ L L+ Q E
Sbjct: 1499 LKEKALA-FEQLLKEKEQGKT-GELNQLLNAVKSMQEKTIIFQQERDQVMLALKQKQMEN 1556
Query: 1520 TMLLTEINDLRLNQNTLYNENERLKQHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERV 1579
T L E+ LR + L E ERL+ HLL++E+ T E++ AE L K+ EE++
Sbjct: 1557 TALQNEVQHLRDKELRLNQELERLRNHLLESEDSYTREVLAAEDREAKLRKKVTVLEEKL 1616
Query: 1580 KSSATAYTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVL 1639
SS+ A SAS ++ QVE+L Q+ +++Q+++ +L +++ V+++ SL+NLQ+VL
Sbjct: 1617 VSSSNAMESASHQATLQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLSNLQMVL 1676
Query: 1640 EQFQAEKDNEIAQSLEFLQGELNNSYAKNNELT--QLISTLQHQLQEARESLSAAGRLSD 1697
E FQ E+ + LE +L + K E QL+S LQ +L EA +L +A RL++
Sbjct: 1677 EHFQQEEKAMYSTELE-KHRQLTAEWKKKAENLEGQLVS-LQERLDEANAALDSASRLTE 1734
Query: 1698 QLNQKSQTIQELTEK--VNQXXXXXXXXXXXXXXXXXGGKVDKCLVTNMIVNFLTAPSRP 1755
QL+ K + I+EL ++ + Q GKVDK L+ N+ + P
Sbjct: 1735 QLDLKEEQIEELKKQNELRQEMLDDVQKKLMNLVNSTEGKVDKVLMRNLFIGHFHTPKN- 1793
Query: 1756 SRHQALQILASVIDMTPQDRQKI 1778
RH+AL+++ S++ + ++ +++
Sbjct: 1794 QRHEALRLMGSILGIKKEEMEQL 1816
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| UNIPROTKB|Q15643 TRIP11 "Thyroid receptor-interacting protein 11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C1F2 TRIP11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D4ABD7 Trip11 "Protein Trip11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|H0YJ97 TRIP11 "Thyroid receptor-interacting protein 11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0027287 Gmap "Golgi microtubule-associated protein" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QUU0 TRIP11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-9833 trip11 "thyroid hormone receptor interactor 11" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1857 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-13 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-11 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-10 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-10 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 5e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-07 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 3e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-07 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 5e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 4e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-06 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 5e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 6e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 7e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-05 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-05 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 4e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-05 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 5e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 5e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-05 | |
| PRK11281 | 1113 | PRK11281, PRK11281, hypothetical protein; Provisio | 6e-05 | |
| PRK11281 | 1113 | PRK11281, PRK11281, hypothetical protein; Provisio | 8e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 2e-04 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 5e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 6e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 8e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.001 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 0.001 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.002 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.002 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 0.002 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.002 | |
| PRK11281 | 1113 | PRK11281, PRK11281, hypothetical protein; Provisio | 0.002 | |
| PHA02562 | 562 | PHA02562, 46, endonuclease subunit; Provisional | 0.002 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 0.002 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.002 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 0.002 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 0.003 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.004 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.004 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-15
Identities = 146/755 (19%), Positives = 320/755 (42%), Gaps = 64/755 (8%)
Query: 581 AQLTAEKERLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLESKD 640
+LTAE + L+E++ L E EL++++E+ ++ L EI +LE+ ILRE+L
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA--- 312
Query: 641 QVDDSIEKTLRNEIQELHAKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSEKFENQT 700
++ +E+ L +++EL +KL + + + + + + L + E L+ + E++ + E
Sbjct: 313 NLERQLEE-LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
Query: 701 GKDSVDIDTLIKNLQSK-KEELCRLLDEKNTLDNIKVEKENLEIQLDNLNTNYQDKINTL 759
+ +++ ++ L+SK + ++ N ++ ++ E LE + + L ++ + L
Sbjct: 372 SR-LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
Query: 760 IQS-KNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERNLDEK--- 815
++ +L+A++ EL E+ L + + E ++++ ER L +
Sbjct: 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
Query: 816 ---LKEFNEKEISYNENIEASNHKIQQLTQETDTLKAELVAQAESTQLVKQEQALLAAAP 872
L+ E ++E ++A L+ L +EL++ E E A+ AA
Sbjct: 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDE-----GYEAAIEAALG 544
Query: 873 VD-DNIVIEN-QQLKQNLESVKQENTLVVENLQNLIAQKDYEINAKVTELSIIMEKCKQY 930
+V+EN K+ + +KQ V L L + K EI E+ +E
Sbjct: 545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQGNDREILKNIEGFLGV 603
Query: 931 EDKCIELESTLDAKLTDF-----------STKEQLNKNKMAELSAML--ESVQAENISIK 977
++ + L L+ + E K + L + V+ +
Sbjct: 604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
Query: 978 QMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVK 1037
+ ++ E EE + ++E ++++ EL+ LAE + + LE K
Sbjct: 664 GSAKTNSSILE----RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
Query: 1038 ELQDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIHEFEVKTNTLSDLQTQLDT 1097
EL++ R + + +L + ++V +LE+ A+L E T+ E E L + + +L
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
Query: 1098 YNAKITHAALVEQELGEMKNQMQTLEYEKQELLKQIQEESIASNFLKNELQSLQDAFSVM 1157
A+I +E ++ ++K +++ L EL ++ + + L+ L+SL+ +
Sbjct: 780 AEAEI---EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-- 834
Query: 1158 KSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLNEELARRDATI 1217
+ L + + +E +++ + ++++ + E+ + +L L R +
Sbjct: 835 --------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
Query: 1218 ATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALEK----------H 1267
L + L+E ++ SE+ ++ E + L +++ LE
Sbjct: 887 EALAL--LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
Query: 1268 LSEKYQFEKEALELRTEDLEYKLQEKEKMIQELNE 1302
LSE+Y E E +E +E + ++ L
Sbjct: 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1857 | |||
| KOG0161|consensus | 1930 | 100.0 | ||
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 100.0 | |
| KOG0161|consensus | 1930 | 99.97 | ||
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.97 | |
| KOG4674|consensus | 1822 | 99.95 | ||
| KOG4674|consensus | 1822 | 99.93 | ||
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.93 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.93 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.86 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.83 | |
| KOG0996|consensus | 1293 | 99.82 | ||
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.8 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.78 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.78 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.68 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.64 | |
| KOG0964|consensus | 1200 | 99.59 | ||
| KOG0018|consensus | 1141 | 99.56 | ||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.55 | |
| KOG0250|consensus | 1074 | 99.53 | ||
| KOG0933|consensus | 1174 | 99.51 | ||
| KOG0996|consensus | 1293 | 99.4 | ||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.38 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.29 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.17 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.11 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.01 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.0 | |
| KOG0018|consensus | 1141 | 98.95 | ||
| KOG0933|consensus | 1174 | 98.92 | ||
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.74 | |
| KOG0250|consensus | 1074 | 98.67 | ||
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.62 | |
| KOG0979|consensus | 1072 | 98.5 | ||
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.41 | |
| KOG0964|consensus | 1200 | 98.38 | ||
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.37 | |
| KOG0971|consensus | 1243 | 98.36 | ||
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.23 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.21 | |
| KOG0976|consensus | 1265 | 98.15 | ||
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.12 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 98.1 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.1 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 98.06 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.94 | |
| KOG0977|consensus | 546 | 97.93 | ||
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.93 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.92 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.84 | |
| PF06470 | 120 | SMC_hinge: SMC proteins Flexible Hinge Domain; Int | 97.79 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.79 | |
| KOG0971|consensus | 1243 | 97.74 | ||
| KOG0962|consensus | 1294 | 97.72 | ||
| KOG4673|consensus | 961 | 97.71 | ||
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.68 | |
| KOG4643|consensus | 1195 | 97.68 | ||
| KOG4673|consensus | 961 | 97.67 | ||
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.65 | |
| KOG0977|consensus | 546 | 97.6 | ||
| KOG4643|consensus | 1195 | 97.58 | ||
| KOG0612|consensus | 1317 | 97.58 | ||
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.56 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.56 | |
| KOG0978|consensus | 698 | 97.51 | ||
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.47 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.47 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.43 | |
| KOG0963|consensus | 629 | 97.21 | ||
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.17 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.12 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.12 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.12 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.03 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.03 | |
| KOG0612|consensus | 1317 | 96.96 | ||
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 96.94 | |
| KOG1029|consensus | 1118 | 96.93 | ||
| KOG0994|consensus | 1758 | 96.92 | ||
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 96.86 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 96.83 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.8 | |
| PF01465 | 46 | GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g | 96.79 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.77 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 96.77 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 96.67 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 96.61 | |
| KOG0963|consensus | 629 | 96.56 | ||
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.53 | |
| KOG0980|consensus | 980 | 96.51 | ||
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 96.48 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.47 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.46 | |
| KOG0995|consensus | 581 | 96.44 | ||
| KOG0994|consensus | 1758 | 96.41 | ||
| KOG0976|consensus | 1265 | 96.34 | ||
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 96.2 | |
| smart00755 | 46 | Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin- | 96.12 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.09 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 96.07 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 96.01 | |
| KOG0995|consensus | 581 | 96.01 | ||
| PF10375 | 19 | GRAB: GRIP-related Arf-binding domain ; InterPro: | 96.0 | |
| KOG1029|consensus | 1118 | 95.99 | ||
| KOG0962|consensus | 1294 | 95.95 | ||
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 95.92 | |
| KOG0946|consensus | 970 | 95.89 | ||
| KOG0946|consensus | 970 | 95.86 | ||
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 95.82 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.8 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 95.68 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.67 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 95.58 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 95.57 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 95.38 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 95.37 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 95.34 | |
| KOG0980|consensus | 980 | 95.32 | ||
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.2 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 94.92 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 94.89 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.88 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 94.8 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.74 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 94.72 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 94.52 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.42 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 94.26 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 94.03 | |
| KOG1003|consensus | 205 | 93.79 | ||
| PRK09039 | 343 | hypothetical protein; Validated | 93.55 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 93.37 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.09 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 93.04 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 93.0 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 92.99 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 92.97 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 92.93 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 92.79 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 92.73 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 92.32 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 92.22 | |
| PF13166 | 712 | AAA_13: AAA domain | 92.21 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 92.16 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 91.74 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 91.72 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 91.51 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 91.48 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 91.39 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 91.25 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 91.17 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 91.14 | |
| PF06705 | 247 | SF-assemblin: SF-assemblin/beta giardin | 91.03 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 90.48 | |
| KOG0978|consensus | 698 | 90.36 | ||
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 89.69 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 89.67 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 89.58 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 89.55 | |
| KOG4593|consensus | 716 | 89.45 | ||
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 88.97 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 88.84 | |
| PF12795 | 240 | MscS_porin: Mechanosensitive ion channel porin dom | 88.72 | |
| KOG1003|consensus | 205 | 88.69 | ||
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 88.52 | |
| PF13514 | 1111 | AAA_27: AAA domain | 88.46 | |
| PF13514 | 1111 | AAA_27: AAA domain | 88.41 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 88.35 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 88.16 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 87.91 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 87.42 | |
| COG4026 | 290 | Uncharacterized protein containing TOPRIM domain, | 87.29 | |
| PF11932 | 251 | DUF3450: Protein of unknown function (DUF3450); In | 87.16 | |
| KOG4360|consensus | 596 | 86.79 | ||
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 86.76 | |
| KOG1853|consensus | 333 | 86.68 | ||
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 86.54 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 86.48 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 86.33 | |
| KOG0249|consensus | 916 | 85.81 | ||
| PRK11281 | 1113 | hypothetical protein; Provisional | 85.79 | |
| KOG0249|consensus | 916 | 85.59 | ||
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 85.49 | |
| PF04912 | 388 | Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit | 85.45 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 84.91 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 84.71 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 84.4 | |
| PF12795 | 240 | MscS_porin: Mechanosensitive ion channel porin dom | 84.22 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 83.6 | |
| KOG2129|consensus | 552 | 83.34 | ||
| PRK10869 | 553 | recombination and repair protein; Provisional | 82.71 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 82.27 | |
| KOG0982|consensus | 502 | 82.2 | ||
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 82.0 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 81.37 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 81.2 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 81.01 | |
| PF09304 | 107 | Cortex-I_coil: Cortexillin I, coiled coil; InterPr | 80.96 | |
| PF04912 | 388 | Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit | 80.87 |
| >KOG0161|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-113 Score=1115.65 Aligned_cols=968 Identities=26% Similarity=0.355 Sum_probs=941.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH---------hHHHHHHHHH
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK---------TLRNEIQELH 658 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~---------~l~~~i~el~ 658 (1857)
+-+++...+..++..+++++.+.+..+++||...+++..++++|..+|++ ++.+++++++ +++..++++.
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~ 914 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELK 914 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999 9999999998 9999999999
Q ss_pred HhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh---hhhhccCCCccchhhhhhhhhh----hHHHHHHHHhhhhhh
Q psy10988 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE---KFENQTGKDSVDIDTLIKNLQS----KKEELCRLLDEKNTL 731 (1857)
Q Consensus 659 ~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~---k~e~~~~~ek~~~~~~ik~l~~----~~e~i~kl~kEkk~l 731 (1857)
.+++++++.+..+..++++++++|++|++.|++++. |++. ++++++++|++|++ +++.|+||+++||.+
T Consensus 915 ~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~----Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l 990 (1930)
T KOG0161|consen 915 ERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLEL----EKNAAENKLKNLEEEINSLDENISKLSKEKKEL 990 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999 99999999999999 899999999999999
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHHhHHHHHHHHHhhhhhhhhHHHhhhhhhhchHHHHHHHHHHHHh
Q psy10988 732 DNIKVEKENLEIQLDNLNTNYQDKINTLIQSKNDLEAKISELNNAQHNKNNEINDLNKRISLFEENNAFLQRSILDLERN 811 (1857)
Q Consensus 732 ~e~~~~~~~~~~~ld~l~~~eedK~n~l~k~k~klE~~i~dle~~l~~e~~~r~dlek~krk~E~~~~~~qe~i~dle~~ 811 (1857)
+++ ++.+.++|+. +++|+++|+|.+++||++|+||+..++++++.|++++|.+|||||+++.+|++|+++...
T Consensus 991 Ee~------~~~l~~~l~~-~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 991 EER------IRELQDDLQA-EEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999 9999999999 999999999999999999999999999999999999999999999999999999998888
Q ss_pred ---HHHHhhhhhhhhhh-hhhchHH-------HHHhHH----------------------------HhHHHHHHHHHHHH
Q psy10988 812 ---LDEKLKEFNEKEIS-YNENIEA-------SNHKIQ----------------------------QLTQETDTLKAELV 852 (1857)
Q Consensus 812 ---l~e~lkk~~e~e~~-~~~~~e~-------~qkkik----------------------------dL~~Ele~l~~~L~ 852 (1857)
++..|+++ +.|++ +++++++ ++++|+ ||.+++++|+.+|+
T Consensus 1064 ~~el~~~l~kk-e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1064 KEELDNQLKKK-ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999 9999999 666666 99999999999999
Q ss_pred HhhchhhhhHHHHhhhhcCCcchh--hHHHHHHHHHhHHHhh-------------h-----hhhHHHHHHHHHHHHh---
Q psy10988 853 AQAESTQLVKQEQALLAAAPVDDN--IVIENQQLKQNLESVK-------------Q-----ENTLVVENLQNLIAQK--- 909 (1857)
Q Consensus 853 e~~~~t~~~~~~~~~~~~aq~e~n--re~e~~klrr~lEe~~-------------~-----e~~~~~~~lq~~k~~~--- 909 (1857)
++||+|. ||+++| +++|+++|+++|++.+ | +++.|++++++.|+++
T Consensus 1143 e~~~~t~-----------~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~leke 1211 (1930)
T KOG0161|consen 1143 EQGGTTA-----------AQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKE 1211 (1930)
T ss_pred HHhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999 9999999999999998 2 9999999999999999
Q ss_pred hHHHHHhhhHHHHHH-----------HHhHhHHHHHHHHHhhHHh---hhchhhhHHHHhhhhhHHHHHHHHHhhhhhhh
Q psy10988 910 DYEINAKVTELSIIM-----------EKCKQYEDKCIELESTLDA---KLTDFSTKEQLNKNKMAELSAMLESVQAENIS 975 (1857)
Q Consensus 910 k~~~~~e~~dl~~~~-----------~~~k~~E~~~~e~~~k~~~---~~~d~~~~~~~~~~e~~el~~~le~~e~~~~~ 975 (1857)
|+.+.++++++...+ ++|+.||.++++++.++++ .++||+.++++++++++++.+++++.++ .
T Consensus 1212 k~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~---~ 1288 (1930)
T KOG0161|consen 1212 KSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA---K 1288 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH---H
Confidence 999999999999998 8999999999999999999 8999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHhhhhHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHhhhHHHH
Q psy10988 976 IKQMNEELQALTETLKQTSNTHEEDRKILDEYKQRVQELDAKLAEEIASKTSIIQTLEIQVKELQ----DKLRSYTHVEN 1051 (1857)
Q Consensus 976 ~~q~~~~~~~~t~~~~~~~~~~eee~k~~~~~~~~~~~~~~~la~~~~~~~~~~~~l~e~~ee~q----~~~r~~~~~~~ 1051 (1857)
++++++.+++||+++++++++++++++.+. +|+++++++.|+|+.|++++++++ +++|.++++++
T Consensus 1289 ~~~~~r~~~~~~~qle~~k~qle~e~r~k~-----------~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1289 LSALSRDKQALESQLEELKRQLEEETREKS-----------ALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999 89999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhhhhhhHHHHhh-hhhhhHHHHhHHhhhhhhhhhHHHHHHhhhhhhhhcchHHHHHHHH
Q psy10988 1052 ELGQYRSKVYELEQIQARLEAERTQWIHEFEVK-TNTLSDLQTQLDTYNAKITHAALVEQELGEMKNQMQTLEYEKQELL 1130 (1857)
Q Consensus 1052 e~~q~r~k~ye~~~i~~~~e~~~~~~lee~k~k-~~~l~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~~~~le~~k~~L~ 1130 (1857)
++++||+| |+.+++++.++ +++.|++ +.+++.++++++++|++|+ +||+++++|+
T Consensus 1358 e~~~~~~k-~e~~~~~~~ee------lee~kk~l~~~lq~~qe~~e~~~~~~~-----------------~Lek~k~~l~ 1413 (1930)
T KOG0161|consen 1358 ELAQWKKK-FEEEVLQRLEE------LEELKKKLQQRLQELEEQIEAANAKNA-----------------SLEKAKNRLQ 1413 (1930)
T ss_pred HHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 99999999 99999999999 9999999 9999999999999999999 9999999999
Q ss_pred hhhHHHHH---HhHHhHHHHHhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy10988 1131 KQIQEESI---ASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQYKQMQIVYEDTQRKLN 1207 (1857)
Q Consensus 1131 ~e~ed~~i---~~n~~~~~l~kkQ~~fd~~~~e~~~~~~~k~~~~e~~~ele~~~ke~r~~~te~~~~~~~~ee~~~~le 1207 (1857)
++++|+++ +.+.+++.|+++|+.||+.+++ ||.++++++.++|++++++|..+|++|++++.|+++.++++
T Consensus 1414 ~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e------~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e 1487 (1930)
T KOG0161|consen 1414 QELEDLQLDLERSRAAVAALEKKQKRFEKLLAE------WKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE 1487 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999 8899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccccCCCCcchhhhhhhhhhhhhhhHHHHHhhHhHHHHHHHHHHHHH-------HhhhhhhhHHHHHHh
Q psy10988 1208 EELARRDATIATLNTTGAPDLNASIENILKEKDATLSEMLKKSEAKDKTLQEMQAALE-------KHLSEKYQFEKEALE 1280 (1857)
Q Consensus 1208 ~~l~renk~l~~~~~~e~~dl~~~~~~~l~e~~~~~~El~k~~~~~e~e~~elq~ale-------~~e~~~~r~~~e~~q 1280 (1857)
+++|+|++++ .+|.||+ .+++++|+++|||+|.+|+++.++.+||++|+ .++++++|+++++.+
T Consensus 1488 -~l~renk~l~----~ei~dl~----~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1488 -ELRRENKNLS----QEIEDLE----EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQ 1558 (1930)
T ss_pred -HHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999 9999999 99999999999999999999999999999998 889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccchhHHHHHHhHHHHHHHHHHHHHhhhhhhHhhhhhhHhHHhh
Q psy10988 1281 LRTEDLEYKLQEKEKMIQELNEMKQSFFIGDSKDSVRYSDEEHVQELRELQLMNESLQNEVLRSATEIDNMKETITYLEQ 1360 (1857)
Q Consensus 1281 ~~~~~~~~~l~ekee~~e~~r~~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~mq~~L~~E~~~~~~e~~~~k~~~~~le~ 1360 (1857)
+|+ +++++|++|+++|+++| ++|++.| ++|+++|++|.++ +++++++|| |||+
T Consensus 1559 ~r~-e~er~l~ek~Ee~E~~r-------------------k~~~~~i---~~~q~~Le~E~r~-k~e~~r~KK---kle~ 1611 (1930)
T KOG0161|consen 1559 LRS-EIERRLQEKDEEIEELR-------------------KNLQRQL---ESLQAELEAETRS-KSEALRSKK---KLEG 1611 (1930)
T ss_pred HHH-HHHHHHHhhhHHHHHHH-------------------HHHHHHH---HHHHHhhhHHHHH-HHHHHhhhh---hhhc
Confidence 999 99999999999999999 9999999 9999999999999 999999999 9999
Q ss_pred hhHHHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHhh
Q psy10988 1361 YNLQLSKSQESSTTL-TLLQSELAEQRTLNQQLVQIVNTKHTESNNYHQEILRLNGILSEELPKLKDLGGQVATLEKQLK 1439 (1857)
Q Consensus 1361 ~~~~le~~l~~a~~~-~e~q~~~~~~k~l~~~lv~~v~~KH~Es~~Yh~eIqrLq~~L~ee~~~~eeL~eq~~~le~rl~ 1439 (1857)
|||+|+++++|||+. ++++ |++ +.||.+++++|.++++.++..+++.+++..+++|+.
T Consensus 1612 di~elE~~ld~ank~~~d~~------K~l---------------kk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~ 1670 (1930)
T KOG0161|consen 1612 DINELEIQLDHANKANEDAQ------KQL---------------KKLQAQLKELQRELEDAQRAREELLEQLAEAERRLA 1670 (1930)
T ss_pred chHHHHHHHHHHHHhhHHHH------HHH---------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 8888 888 999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhhcccCCCc--ccCcchhHhHHHHhhcccccc--hHHHHHHHHHHHHH
Q psy10988 1440 TTSETLATKERQLAETKEQLSLAQSQLEEVTQLMSSNDRPE--ADGEPAQEREVVAQHVAPVET--SRERNELALRLQNL 1515 (1857)
Q Consensus 1440 ~~~~~~~~~e~~~~~~~~~l~l~qae~EEl~~l~eq~er~r--Ae~El~eksE~v~~~~~~~~t--~~ERdklel~Lkql 1515 (1857)
.+++++++++...++.+|++ ||.++.|..|.++..+++ ++ ..++++++..|.++
T Consensus 1671 ---------------------~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~-~s~l~~~KrklE~~i~~l 1728 (1930)
T KOG0161|consen 1671 ---------------------ALQAELEELREKLEALERARRQAELELEELAERVNELNAQ-NSSLTAEKRKLEAEIAQL 1728 (1930)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHH
Confidence 88999999999999999999 999999999999998888 55 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHHH----------HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10988 1516 QEEKTMLLTEINDLRLNQNTLYNENERLK----------QHLLKTEEDNTSELVKAEQTIQDLHVKLREAEERVKSSATA 1585 (1857)
Q Consensus 1516 Q~E~eelq~E~~~lrEKe~kl~~ELERLR----------~HLlE~EesyTqEal~aE~r~kELr~RL~elEEkl~~SS~A 1585 (1857)
+.++++.+.+.+.+.|+.++++.++.++. .|+..+.. .+|..+++|+.||++||..
T Consensus 1729 ~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~-------~LE~~~kdLq~rL~e~E~~------- 1794 (1930)
T KOG0161|consen 1729 QSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK-------SLERQVKDLQLRLDEAEQA------- 1794 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-------
Confidence 99999999999999999999999999998 78888888 9999999999999999999
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q psy10988 1586 YTSASVRSNQQVEALTSQVKSLTEQKEKLQEKLYQAEDVVQKHQASLTNLQIVLEQFQAEKDNEIAQSLEFLQGELNNSY 1665 (1857)
Q Consensus 1586 ~tsAs~ra~qQVEsLQ~Ql~~Le~QRDeeq~qls~sek~~rk~e~sL~NLQ~VLEQFQ~EeEr~i~aalerlr~qL~e~~ 1665 (1857)
|..+++.+|.+|+.+|+.|+.++|.+..+...+.+.+++.+++++.|+ ||.++|++ +.+++++.+
T Consensus 1795 ---a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~-----~q~eed~k---~~~~~q~~~---- 1859 (1930)
T KOG0161|consen 1795 ---ALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQ-----FQVEEDKK---NIERLQDLV---- 1859 (1930)
T ss_pred ---hhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHH-----HHhhhhhh---HHHHHHHHH----
Confidence 999999999999999999999999999999999999999999999999 99999999 999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q psy10988 1666 AKNNELTQLISTLQHQLQEARESLSAAGRLSDQLNQKSQTIQELTEKVNQLMEELNKKEAKLKEVNNGGKVD 1737 (1857)
Q Consensus 1666 ~k~ekLq~kv~sLQ~QLeEAee~L~aAsRLs~QLrkKq~qIeeLkeeaeil~E~L~kar~KL~~~~~egKVD 1737 (1857)
++++.++..|++||++|++. |+++...++..++.++++.++++.++..++.++.+++.....+.+|
T Consensus 1860 ---dkl~~k~~~~krQleeaE~~---~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r~~~~~~~~~ 1925 (1930)
T KOG0161|consen 1860 ---DKLQAKIKQYKRQLEEAEEE---ANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLRSTGTKKPIG 1925 (1930)
T ss_pred ---HHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999998 9999999999999999999999999999999999999876325544
|
|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >KOG0018|consensus | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0018|consensus | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0979|consensus | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >KOG0962|consensus | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0978|consensus | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0963|consensus | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG0963|consensus | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245 | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >KOG0962|consensus | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0946|consensus | Back alignment and domain information |
|---|
| >KOG0946|consensus | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG1003|consensus | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF06705 SF-assemblin: SF-assemblin/beta giardin | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0978|consensus | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG4593|consensus | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF12795 MscS_porin: Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
| >KOG1003|consensus | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] | Back alignment and domain information |
|---|
| >PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
| >KOG4360|consensus | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >KOG1853|consensus | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG0249|consensus | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0249|consensus | Back alignment and domain information |
|---|
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
| >PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF12795 MscS_porin: Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >KOG2129|consensus | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG0982|consensus | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) | Back alignment and domain information |
|---|
| >PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 3e-23
Identities = 97/637 (15%), Positives = 215/637 (33%), Gaps = 154/637 (24%)
Query: 678 LDGKYEELKEKYEQMSEKFENQTGKD--SVDIDTLIKNLQSKKEELCRLLDEKNT----- 730
+D + E + +Y+ + FE+ + D+ + K++ SK EE+ ++ K+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTL 65
Query: 731 --LDNIKVEKENLEIQL--DNLNTNYQ---DKINTLIQSKNDLEAKISELNNAQHNKNNE 783
+ ++E + + + L NY+ I T + + + E + +N N
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 784 INDLN-KRISLFEE-NNAFLQ----------------RSILDLERNLDEKLKEFNEKEIS 825
N R+ + + A L+ ++ + L+ L K++ + +I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 826 YNENIEASNHKIQQLTQETDTLKAELVAQAEST-QLVKQEQALLAAAPVDDNIVIEN-QQ 883
+ L + S +++ Q LL + ++
Sbjct: 186 W-------------LN----------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 884 LKQNLESVKQENTLVVENLQNLIAQKDYE----INAKVTELSIIMEKCKQYEDKCIELES 939
+K + S++ E L+ L+ K YE + V + C L +
Sbjct: 223 IKLRIHSIQAE-------LRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLT 271
Query: 940 TLDAKLTDFSTKEQLNKNKMAELSAMLESVQAENISIKQMNEELQALTETLKQTSNTH-- 997
T ++TDF + + S L + +++ +K ++ Q L + T+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 998 ------EEDRKILDEYKQR------------VQELDAKLAEEIASKTSI--------IQT 1031
+ D +K + L+ ++ + S+
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 1032 LEI--------QVKELQDKLRSYTHVENELGQYRSKVYELEQIQARLEAERTQWIH---- 1079
L + V + +KL Y+ VE + + + + ++ +++ E +H
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIV 450
Query: 1080 -EFEVK----TNTLSDLQTQLDTYNAK-IT-HAALVEQELGEMKNQMQTLEYEKQELLKQ 1132
+ + ++ L LD Y I H +E E+ L +
Sbjct: 451 DHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEH-------------PERMTLFRM 495
Query: 1133 IQEESIASNFLKNELQSLQDAFSVMKSDNASLLLEKNTLMETKLTLEAQLKELADNETQY 1192
+ + FL+ +++ A++ + S+L NTL L+ + DN+ +Y
Sbjct: 496 V---FLDFRFLEQKIRHDSTAWNA----SGSIL---NTL----QQLKFYKPYICDNDPKY 541
Query: 1193 KQMQIVYEDTQRKLNEELARRDAT----IATLNTTGA 1225
+++ D K+ E L T IA + A
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409 | Back alignment and structure |
|---|
| >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409 | Back alignment and structure |
|---|
| >4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} Length = 877 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1857 | |||
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 99.43 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 99.34 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 99.16 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 99.12 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.69 | |
| 1gxl_A | 213 | SMC, chromosome segregation SMC protein; SMC dimer | 98.42 | |
| 3nwc_A | 189 | SMC protein; structural maintenance of chromosomes | 98.39 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 98.38 | |
| 3bas_A | 89 | Myosin heavy chain, striated muscle/general contro | 98.28 | |
| 1gxj_A | 186 | SMC, chromosome segregation SMC protein; SMC dimer | 98.16 | |
| 3l51_B | 166 | Structural maintenance of chromosomes protein 4; s | 97.91 | |
| 2wd5_B | 213 | Structural maintenance of chromosomes protein 3; D | 97.49 | |
| 2wd5_A | 233 | Structural maintenance of chromosomes protein 1A; | 97.36 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 97.29 | |
| 3l51_A | 161 | Structural maintenance of chromosomes protein 2; s | 97.19 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.93 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.81 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.75 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 95.49 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 95.09 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 94.91 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 94.79 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 94.1 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 92.1 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 91.79 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 91.69 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 91.02 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 90.81 | |
| 1upt_B | 60 | Golgi autoantigen, golgin subfamily A member 4; hy | 88.96 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 88.03 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 88.01 | |
| 3s84_A | 273 | Apolipoprotein A-IV; four helix bundle, transport | 84.21 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 81.49 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 80.97 |
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-13 Score=135.08 Aligned_cols=106 Identities=24% Similarity=0.419 Sum_probs=103.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHhhh-ccccchhHhH---------hHHHHHHHHH
Q psy10988 589 RLDEEVTVLSQENIELKKKLEQAVEKQKGLEEEIQQLEEDTSILREQLES-KDQVDDSIEK---------TLRNEIQELH 658 (1857)
Q Consensus 589 ~~~~~~~~~~~e~~~~k~~l~~~~~~~k~lee~~~~l~~ek~~L~~ql~~-~~~~~d~ee~---------~l~~~i~el~ 658 (1857)
+-++++..+.+++.+++++|.+.++.|++|+.++++|.+++|+|+.||++ ++.++|++|+ +|+.+|++++
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999 9999999999 9999999999
Q ss_pred HhhhhHHHhhHHHHHHHHhhhHHHHHHHHhHHHhhh
Q psy10988 659 AKLINVEALVNQAQVEKQALDGKYEELKEKYEQMSE 694 (1857)
Q Consensus 659 ~rl~~~E~~~~~l~~~k~kle~~~~eLk~~~e~~e~ 694 (1857)
+||+++|+.++.|++.|++|+++|++|+++|++++.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1 | Back alignment and structure |
|---|
| >3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A | Back alignment and structure |
|---|
| >1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A | Back alignment and structure |
|---|
| >3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0 | Back alignment and structure |
|---|
| >2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} | Back alignment and structure |
|---|
| >2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E* | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1857 | ||||
| d1u19a_ | 348 | f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: | 2e-04 |
| >d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Family A G protein-coupled receptor-like superfamily: Family A G protein-coupled receptor-like family: Rhodopsin-like domain: Rhodopsin species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 16/94 (17%)
Query: 1739 CLVTNMIVNFLTAPSRPSRHQALQILASVIDMTPQDRQKIGLEPSQAFNP------NQSL 1792
C + V F + S + + + +NP N+
Sbjct: 264 CWLPYAGVAFYIFTHQGSDFGPIFMTIPAF---------FAKTSA-VYNPVIYIMMNKQF 313
Query: 1793 SEAFIQFLESESSPRSKAQSSTPVSRRTSSTTSP 1826
+ L +P ++ST VS+ +S +P
Sbjct: 314 RNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAP 347
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1857 | |||
| d1gxja_ | 161 | Smc hinge domain {Thermotoga maritima [TaxId: 2336 | 98.46 | |
| d2ap3a1 | 185 | Hypothetical protein MW0975 (SA0943) {Staphylococc | 84.52 |
| >d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Smc hinge domain superfamily: Smc hinge domain family: Smc hinge domain domain: Smc hinge domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=2.4e-08 Score=101.96 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=70.6
Q ss_pred hhHHHHHHHHhhcccccccCCCCCCCCcCccchhHhhhhhcchhHHHHHHHhhHHHHhchheecCchHHh---HhhhccC
Q psy10988 403 TQLLSVEEALKKKENDLEDWGEGDDWGTGNSTELNNLRAKCSEFEKTIVELKSQEELLKQALIDKENELS---EWGQTNE 479 (1857)
Q Consensus 403 gf~~svk~l~k~~~~~~~~~~~~~~W~kg~~~lLsDli~~v~eEy~~AVE~~~Lee~L~~~VVd~~dea~---e~L~~ne 479 (1857)
||+.|++++++ ++....|..|.|+|+|. |++.|.+||++ +||++++++||++.+.|. +||+.+.
T Consensus 1 G~~~gvr~il~-----------~~~~~~gv~G~v~dli~-v~~~y~~Ave~-aLG~~l~~vVV~~~~~A~~~i~~lk~~~ 67 (161)
T d1gxja_ 1 GFSRAVRAVFE-----------EKERFPGLVDVVSNLIE-VDEKYSLAVSV-LLGGTAQNIVVRNVDTAKAIVEFLKQNE 67 (161)
T ss_dssp CCCHHHHHHHH-----------TGGGCTTEEEEHHHHCB-CCGGGHHHHHH-HHGGGGGCEEESSHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHh-----------ccccCCCceEEHHHhCc-cCHHHHHHHHH-HhhhhhceEEECCHHHHHHHHHHHhhcc
Confidence 79999999998 44556677799999999 99999999999 999999999999999877 9999999
Q ss_pred CCCcccccCcchh
Q psy10988 480 WGSPSSSDLNTLR 492 (1857)
Q Consensus 480 kGra~ff~Ld~~~ 492 (1857)
.|+++|+|+|.+.
T Consensus 68 ~Gr~tfipl~~i~ 80 (161)
T d1gxja_ 68 AGRVTILPLDLID 80 (161)
T ss_dssp CCCEEEEETTTCC
T ss_pred CceEEEEeccccc
Confidence 9999999999765
|
| >d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|