Psyllid ID: psy11001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEccccccccHHHHHHHHHHHHHHcccEcccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
ftgrvcpapcegacvlginepavtiKNIECAIIDHafeqgwikpeiptlrtgkkvaivgsgpsglgaAHQLNKEAGTELIK
Flexible Loop (DISEMBL)
ftgrvcpapcegACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGpsglgaahqlnkeagtelik
Low Complexity Region (SEG)
FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK
Disordered region (IsUnstruct)
****VCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG**********************
Disordered Region (DISOPRED)
FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK
Disordered Region (DISEMBL)
FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLN*********
Disordered Region (DISPRO)
**GRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q03460	2194	Glutamate synthase [NADH]	N/A	N/A	0.901	0.033	0.780	3e-28
Q9LV03	2208	Glutamate synthase 1 [NAD	yes	N/A	0.901	0.033	0.753	2e-27
Q0JKD0	2167	Glutamate synthase 1 [NAD	yes	N/A	0.901	0.033	0.739	1e-26
O34399	493	Glutamate synthase [NADPH	yes	N/A	0.901	0.148	0.726	3e-26
Q0DG35	2188	Glutamate synthase 2 [NAD	no	N/A	0.901	0.033	0.726	4e-26
Q9C102	2111	Putative glutamate syntha	yes	N/A	0.901	0.034	0.684	2e-24
Q12680	2145	Glutamate synthase [NADH]	yes	N/A	0.950	0.035	0.610	1e-22
P96219	488	Glutamate synthase [NADPH	yes	N/A	0.950	0.157	0.623	1e-22
P09832	472	Glutamate synthase [NADPH	N/A	N/A	0.864	0.148	0.527	1e-11
P37127	659	Protein AegA OS=Escherich	N/A	N/A	0.888	0.109	0.460	1e-09

>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/73 (78%), Positives = 62/73 (84%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI E  V+IKNIECAIID AFE+GW+ P  P  RTGK+VAIVGS
Sbjct: 1773 FTGRVCPAPCEGSCVLGIIENPVSIKNIECAIIDKAFEEGWMIPRPPVKRTGKRVAIVGS 1832

Query: 61   GPSGLGAAHQLNK 73
            GPSGL AA QLNK
Sbjct: 1833 GPSGLAAADQLNK 1845

Medicago sativa (taxid: 3879)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4

>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/73 (75%), Positives = 62/73 (84%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI E  V+IK+IECAIID AFE+GW+ P  P  RTGKKVAI+GS
Sbjct: 1794 FTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLKRTGKKVAIIGS 1853

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AA QLNK
Sbjct: 1854 GPAGLAAADQLNK 1866

Involved in glutamate biosynthesis. Required for non-photorespiratory ammonium assimilation. Probably involved in primary ammonium assimilation in roots.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/73 (73%), Positives = 61/73 (83%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI E  V+IK+IECAIID  FE+GW+ P  P  RTGKKVAI+GS
Sbjct: 1755 FTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKGFEEGWMVPRPPLQRTGKKVAIIGS 1814

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AA QLNK
Sbjct: 1815 GPAGLAAADQLNK 1827

Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain 168) GN=gltB PE=2 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 61/73 (83%)

Query: 1   FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
           FTGRVCPAPCEG+C L I++PAV+IKNIE  IID  FE GWI+P IP  RTGKKVAIVGS
Sbjct: 101 FTGRVCPAPCEGSCTLAISDPAVSIKNIERTIIDKGFENGWIQPRIPKKRTGKKVAIVGS 160

Query: 61  GPSGLGAAHQLNK 73
           GP+GL +A QLN+
Sbjct: 161 GPAGLASADQLNQ 173

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0555600 PE=2 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/73 (72%), Positives = 61/73 (83%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI +  V+IK+IECAIID  FE+GW+ P  P  RTGK+VAIVGS
Sbjct: 1773 FTGRVCPAPCEGSCVLGIIDNPVSIKSIECAIIDKGFEEGWMVPRPPLRRTGKRVAIVGS 1832

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AA QLNK
Sbjct: 1833 GPAGLAAADQLNK 1845

Involved in glutamate biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/73 (68%), Positives = 59/73 (80%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGAC LGI E  V IK++E AIID A+E+GWI P  P  RTG++VAI+GS
Sbjct: 1704 FTGRVCPAPCEGACTLGIIESPVGIKSVERAIIDKAWEEGWIVPRPPAERTGRRVAIIGS 1763

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AA QLN+
Sbjct: 1764 GPAGLAAADQLNR 1776

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLT1 PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGAC LGI E  V IK++E  IID+AF++GWIKP  P+ RTG  V ++GS
Sbjct: 1731 FTGRVCPAPCEGACTLGIIEDPVGIKSVERIIIDNAFKEGWIKPCPPSTRTGFTVGVIGS 1790

Query: 61   GPSGLGAAHQLNKEAGT 77
            GP+GL  A  LN+   T
Sbjct: 1791 GPAGLACADMLNRAGHT 1807

Forms L-glutamate from L-glutamine and 2-oxoglutarate. Represents an alternative pathway to L-glutamate dehydrogenase for the biosynthesis of L-glutamate. Participates with glutamine synthetase in ammonia assimilation processes. The enzyme is specific for NADH, L-glutamine and 2-oxoglutarate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P96219|GLTD_MYCTU Glutamate synthase [NADPH] small chain OS=Mycobacterium tuberculosis GN=gltD PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 1   FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
           FTGR+CPAPCE ACVLGIN+  VTIK IE  IID AF++GW++P  P   TG+ VA+VGS
Sbjct: 93  FTGRLCPAPCEPACVLGINQDPVTIKQIELEIIDKAFDEGWVQPRPPRKLTGQTVAVVGS 152

Query: 61  GPSGLGAAHQLNKEAGT 77
           GP+GL AA QL +   T
Sbjct: 153 GPAGLAAAQQLTRAGHT 169

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain K12) GN=gltD PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 4/74 (5%)

Query: 3   GRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLR-TGKKVAIVG 59
           GRVCP    CEG+C L     AVTI NIE  I D AFE GW +P++  ++ TGKKVAI+G
Sbjct: 95  GRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGW-RPDMSGVKQTGKKVAIIG 153

Query: 60  SGPSGLGAAHQLNK 73
           +GP+GL  A  L +
Sbjct: 154 AGPAGLACADVLTR 167

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P37127|AEGA_ECOLI Protein AegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 4/76 (5%)

Query: 1   FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTL-RTGKKVAI 57
            TGRVCP    CEGAC +     AVTI NIE  I D A  +GW +P++  + +  K+VAI
Sbjct: 274 ITGRVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGW-RPDLSHVTKVDKRVAI 332

Query: 58  VGSGPSGLGAAHQLNK 73
           +G+GP+GL  A  L +
Sbjct: 333 IGAGPAGLACADVLTR 348

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
328721168	2080	PREDICTED: putative glutamate synthase [	0.901	0.035	0.904	4e-34
195590926	2252	GD12441 [Drosophila simulans] gi|1941972	0.901	0.032	0.876	3e-33
350405948	2065	PREDICTED: putative glutamate synthase [	0.901	0.035	0.863	8e-33
350405946	2065	PREDICTED: putative glutamate synthase [	0.901	0.035	0.863	8e-33
340711712	2066	PREDICTED: putative glutamate synthase [	0.901	0.035	0.863	8e-33
111120011	2084	glutamate synthase [Aedes aegypti]	0.901	0.035	0.863	3e-32
307210154	2138	Putative glutamate synthase [NADPH] [Har	0.901	0.034	0.849	3e-32
157107014	2084	glutamate synthase [Aedes aegypti] gi|10	0.901	0.035	0.863	3e-32
195495005	2116	GE22188 [Drosophila yakuba] gi|194181184	0.901	0.034	0.876	4e-32
194872333	2114	GG15849 [Drosophila erecta] gi|190654793	0.901	0.034	0.876	4e-32

>gi|328721168|ref|XP_001948786.2| PREDICTED: putative glutamate synthase [NADPH]-like [Acyrthosiphon pisum]

 Score =  148 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/73 (90%), Positives = 68/73 (93%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPE P +R+GK VAIVGS
Sbjct: 1676 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEPPKIRSGKTVAIVGS 1735

Query: 61   GPSGLGAAHQLNK 73
            GPSGL  AHQLNK
Sbjct: 1736 GPSGLATAHQLNK 1748

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|195590926|ref|XP_002085195.1| GD12441 [Drosophila simulans] gi|194197204|gb|EDX10780.1| GD12441 [Drosophila simulans]

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/73 (87%), Positives = 70/73 (95%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI+EPAVTIKNIECAIIDHAFEQGWIKPEIP +RTGK+VAIVGS
Sbjct: 1721 FTGRVCPAPCEGSCVLGISEPAVTIKNIECAIIDHAFEQGWIKPEIPEVRTGKRVAIVGS 1780

Query: 61   GPSGLGAAHQLNK 73
            GPSGL A+ QLN+
Sbjct: 1781 GPSGLAASQQLNR 1793

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405948|ref|XP_003487604.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 2 [Bombus impatiens]

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGI+EPAVTIKNIECAIIDHAFEQGWI P  PT RTG++VA+VGS
Sbjct: 1662 FTGRVCPAPCEGACVLGISEPAVTIKNIECAIIDHAFEQGWIVPHPPTTRTGRRVAVVGS 1721

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AAHQLNK
Sbjct: 1722 GPAGLAAAHQLNK 1734

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350405946|ref|XP_003487603.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 1 [Bombus impatiens]

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGI+EPAVTIKNIECAIIDHAFEQGWI P  PT RTG++VA+VGS
Sbjct: 1662 FTGRVCPAPCEGACVLGISEPAVTIKNIECAIIDHAFEQGWIVPHPPTTRTGRRVAVVGS 1721

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AAHQLNK
Sbjct: 1722 GPAGLAAAHQLNK 1734

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340711712|ref|XP_003394415.1| PREDICTED: putative glutamate synthase [NADPH]-like [Bombus terrestris]

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGI+EPAVTIKNIECAIIDHAFEQGWI P  PT RTG++VA+VGS
Sbjct: 1663 FTGRVCPAPCEGACVLGISEPAVTIKNIECAIIDHAFEQGWIVPHPPTTRTGRRVAVVGS 1722

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AAHQLNK
Sbjct: 1723 GPAGLAAAHQLNK 1735

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|111120011|gb|AAV31916.2| glutamate synthase [Aedes aegypti]

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGI+EPAVTIKNIEC IIDHAFEQGWI P+IPT RTGK+VAI+GS
Sbjct: 1683 FTGRVCPAPCEGACVLGISEPAVTIKNIECTIIDHAFEQGWIVPQIPTERTGKRVAIIGS 1742

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AA QLNK
Sbjct: 1743 GPAGLAAAQQLNK 1755

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210154|gb|EFN86827.1| Putative glutamate synthase [NADPH] [Harpegnathos saltator]

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/73 (84%), Positives = 67/73 (91%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGI+EP VTIKNIECAIIDHAFEQGW+ P  PT RTGKK+A+VGS
Sbjct: 1734 FTGRVCPAPCEGACVLGISEPPVTIKNIECAIIDHAFEQGWVVPHPPTRRTGKKIAVVGS 1793

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AAHQLNK
Sbjct: 1794 GPAGLAAAHQLNK 1806

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|157107014|ref|XP_001649585.1| glutamate synthase [Aedes aegypti] gi|108868750|gb|EAT32975.1| AAEL014768-PA [Aedes aegypti]

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEGACVLGI+EPAVTIKNIEC IIDHAFEQGWI P+IPT RTGK+VAI+GS
Sbjct: 1683 FTGRVCPAPCEGACVLGISEPAVTIKNIECTIIDHAFEQGWIVPQIPTERTGKRVAIIGS 1742

Query: 61   GPSGLGAAHQLNK 73
            GP+GL AA QLNK
Sbjct: 1743 GPAGLAAAQQLNK 1755

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195495005|ref|XP_002095083.1| GE22188 [Drosophila yakuba] gi|194181184|gb|EDW94795.1| GE22188 [Drosophila yakuba]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 70/73 (95%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI+EPAVTIKNIECAIIDHAFEQGWIKPEIP +RTGK+VAIVGS
Sbjct: 1717 FTGRVCPAPCEGSCVLGISEPAVTIKNIECAIIDHAFEQGWIKPEIPEVRTGKRVAIVGS 1776

Query: 61   GPSGLGAAHQLNK 73
            GPSGL A+ QLN+
Sbjct: 1777 GPSGLAASQQLNR 1789

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194872333|ref|XP_001973010.1| GG15849 [Drosophila erecta] gi|190654793|gb|EDV52036.1| GG15849 [Drosophila erecta]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 70/73 (95%)

Query: 1    FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
            FTGRVCPAPCEG+CVLGI+EPAVTIKNIECAIIDHAFEQGWIKPEIP +RTGK+VAIVGS
Sbjct: 1715 FTGRVCPAPCEGSCVLGISEPAVTIKNIECAIIDHAFEQGWIKPEIPEVRTGKRVAIVGS 1774

Query: 61   GPSGLGAAHQLNK 73
            GPSGL A+ QLN+
Sbjct: 1775 GPSGLAASQQLNR 1787

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0036663	2114	CG9674 [Drosophila melanogaste	0.925	0.035	0.868	1.1e-30
CGD|CAL0000516	2126	GLT1 [Candida albicans (taxid:	0.925	0.035	0.75	6.8e-26
WB|WBGene00012326	2175	W07E11.1 [Caenorhabditis elega	0.987	0.036	0.712	1.5e-25
TAIR|locus:2178461	2208	GLT1 "NADH-dependent glutamate	0.901	0.033	0.753	3.6e-24
ASPGD|ASPL0000027159	2126	gltA [Emericella nidulans (tax	0.901	0.034	0.739	4.4e-24
UNIPROTKB|Q0JKD0	2167	LOC_Os01g48960 "Glutamate synt	0.901	0.033	0.739	9.3e-24
TIGR_CMR|CPS_0762	496	CPS_0762 "glutamate synthase,	0.925	0.151	0.684	9.1e-23
UNIPROTKB|P96219	488	gltD "Glutamate synthase [NADP	0.950	0.157	0.623	1.1e-21
POMBASE|SPAPB1E7.07	2111	glt1 "glutamate synthase Glt1	0.975	0.037	0.65	1.2e-21
UNIPROTKB|Q9KPJ3	489	VC_2374 "Glutamate synthase, s	0.888	0.147	0.652	1.4e-21

FB|FBgn0036663 CG9674 [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 66/76 (86%), Positives = 72/76 (94%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEG+CVLGI+EPAVTIKNIECAIIDHAFEQGWIKPEIP +RTGK+VAIVGS
Sbjct:  1715 FTGRVCPAPCEGSCVLGISEPAVTIKNIECAIIDHAFEQGWIKPEIPEVRTGKRVAIVGS 1774

Query:    61 GPSGLGAAHQLNKEAG 76
             GPSGL A+ QLN+ AG
Sbjct:  1775 GPSGLAASQQLNR-AG 1789

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

CGD|CAL0000516 GLT1 [Candida albicans (taxid:5476)]

 Score = 309 (113.8 bits), Expect = 6.8e-26, P = 6.8e-26
 Identities = 57/76 (75%), Positives = 63/76 (82%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGR+CPAPC GACVLGINE  V IK++ECAIIDH FEQGWIKP  P  RTGK VA++GS
Sbjct:  1715 FTGRICPAPCNGACVLGINEDPVNIKSVECAIIDHGFEQGWIKPTPPAHRTGKTVAVIGS 1774

Query:    61 GPSGLGAAHQLNKEAG 76
             GP+GL AA QLNK AG
Sbjct:  1775 GPAGLAAADQLNK-AG 1789

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

WB|WBGene00012326 W07E11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 306 (112.8 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEGAC LGI  PAVTIK+IECAIID+AF QGW+KP  P   TGK++AI+GS
Sbjct:  1763 FTGRVCPAPCEGACTLGIGSPAVTIKSIECAIIDYAFMQGWMKPCKPAFNTGKRIAIIGS 1822

Query:    61 GPSGLGAAHQLNKEAGTELI 80
             GPSGLGAA QL K   T ++
Sbjct:  1823 GPSGLGAAAQLVKVGHTVVV 1842

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

TAIR|locus:2178461 GLT1 "NADH-dependent glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 3.6e-24, P = 3.6e-24
 Identities = 55/73 (75%), Positives = 62/73 (84%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEG+CVLGI E  V+IK+IECAIID AFE+GW+ P  P  RTGKKVAI+GS
Sbjct:  1794 FTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLKRTGKKVAIIGS 1853

Query:    61 GPSGLGAAHQLNK 73
             GP+GL AA QLNK
Sbjct:  1854 GPAGLAAADQLNK 1866

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006537 "glutamate biosynthetic process" evidence=IEA;IDA;IMP

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0015930 "glutamate synthase activity" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA;IDA;IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042128 "nitrate assimilation" evidence=TAS

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009536 "plastid" evidence=TAS

ASPGD|ASPL0000027159 gltA [Emericella nidulans (taxid:162425)]

 Score = 292 (107.8 bits), Expect = 4.4e-24, P = 4.4e-24
 Identities = 54/73 (73%), Positives = 60/73 (82%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEGACVLGINE  V IK+IECAIID  FE GW+ P  P +RTGK VAI+GS
Sbjct:  1706 FTGRVCPAPCEGACVLGINEDPVGIKSIECAIIDRGFEMGWMVPRPPPVRTGKTVAIIGS 1765

Query:    61 GPSGLGAAHQLNK 73
             GP+GL AA QLN+
Sbjct:  1766 GPAGLAAADQLNR 1778

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISA;RCA;IMP

GO:0009064 "glutamine family amino acid metabolic process" evidence=IGI;RCA;IMP

GO:0005829 "cytosol" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q0JKD0 LOC_Os01g48960 "Glutamate synthase 1 [NADH], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 289 (106.8 bits), Expect = 9.3e-24, P = 9.3e-24
 Identities = 54/73 (73%), Positives = 61/73 (83%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEG+CVLGI E  V+IK+IECAIID  FE+GW+ P  P  RTGKKVAI+GS
Sbjct:  1755 FTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKGFEEGWMVPRPPLQRTGKKVAIIGS 1814

Query:    61 GPSGLGAAHQLNK 73
             GP+GL AA QLNK
Sbjct:  1815 GPAGLAAADQLNK 1827

GO:0006537 "glutamate biosynthetic process" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0019676 "ammonia assimilation cycle" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IEP

TIGR_CMR|CPS_0762 CPS_0762 "glutamate synthase, NADH/NADPH, small subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 269 (99.8 bits), Expect = 9.1e-23, P = 9.1e-23
 Identities = 52/76 (68%), Positives = 60/76 (78%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEGACVLGIN   V IK  E  IIDHAF++GW+  + P+ RTGK VA++GS
Sbjct:   102 FTGRVCPAPCEGACVLGINADPVAIKLHEKEIIDHAFKEGWVVAQPPSARTGKNVAVIGS 161

Query:    61 GPSGLGAAHQLNKEAG 76
             GP+GL AA QLNK AG
Sbjct:   162 GPAGLAAAAQLNK-AG 176

GO:0006537 "glutamate biosynthetic process" evidence=ISS

GO:0045181 "glutamate synthase activity, NAD(P)H as acceptor" evidence=ISS

UNIPROTKB|P96219 gltD "Glutamate synthase [NADPH] small chain" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 259 (96.2 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGR+CPAPCE ACVLGIN+  VTIK IE  IID AF++GW++P  P   TG+ VA+VGS
Sbjct:    93 FTGRLCPAPCEPACVLGINQDPVTIKQIELEIIDKAFDEGWVQPRPPRKLTGQTVAVVGS 152

Query:    61 GPSGLGAAHQLNKEAGT 77
             GP+GL AA QL +   T
Sbjct:   153 GPAGLAAAQQLTRAGHT 169

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

POMBASE|SPAPB1E7.07 glt1 "glutamate synthase Glt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 269 (99.8 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 52/80 (65%), Positives = 63/80 (78%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCEGAC LGI E  V IK++E AIID A+E+GWI P  P  RTG++VAI+GS
Sbjct:  1704 FTGRVCPAPCEGACTLGIIESPVGIKSVERAIIDKAWEEGWIVPRPPAERTGRRVAIIGS 1763

Query:    61 GPSGLGAAHQLNKEAGTELI 80
             GP+GL AA QLN+ AG  ++
Sbjct:  1764 GPAGLAAADQLNR-AGHHVV 1782

GO:0004355 "glutamate synthase (NADPH) activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006537 "glutamate biosynthetic process" evidence=ISO

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016040 "glutamate synthase (NADH) activity" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q9KPJ3 VC_2374 "Glutamate synthase, small subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 258 (95.9 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 47/72 (65%), Positives = 58/72 (80%)

Query:     1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
             FTGRVCPAPCE ACVLGIN+  +TI NIE  I++ A+++G+ KP+ P  RTGK VAI+GS
Sbjct:    93 FTGRVCPAPCETACVLGINQDPITICNIEKTIVERAYQEGYAKPKTPRSRTGKTVAIIGS 152

Query:    61 GPSGLGAAHQLN 72
             GP+GL AA QLN
Sbjct:   153 GPAGLAAAEQLN 164

GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS

GO:0006537 "glutamate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12680	GLT1_YEAST	1, ., 4, ., 1, ., 1, 4	0.6103	0.9506	0.0358	yes	N/A
Q9LV03	GLUT1_ARATH	1, ., 4, ., 1, ., 1, 4	0.7534	0.9012	0.0330	yes	N/A
O34399	GLTB_BACSU	1, ., 4, ., 1, ., 1, 3	0.7260	0.9012	0.1480	yes	N/A
Q0JKD0	GLT1_ORYSJ	1, ., 4, ., 1, ., 1, 4	0.7397	0.9012	0.0336	yes	N/A
Q9C102	GLT1_SCHPO	1, ., 4, ., 1, ., 1, 3	0.6849	0.9012	0.0345	yes	N/A
P96219	GLTD_MYCTU	1, ., 4, ., 1, ., 1, 3	0.6233	0.9506	0.1577	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-48
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	4e-40
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	4e-30
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-24
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	4e-21
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	4e-19
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	7e-17
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	2e-15
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	4e-13
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	5e-13
PRK12809	639	PRK12809, PRK12809, putative oxidoreductase Fe-S b	2e-11
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	4e-11
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	1e-10
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	7e-08
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	6e-07
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-05
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	3e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	5e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	6e-04
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	0.001
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	0.001
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	0.001
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.002

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score =  159 bits (404), Expect = 1e-48
 Identities = 53/73 (72%), Positives = 59/73 (80%)

Query: 1   FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
           FTGRVCPAPCEGAC L IN   VTIKNIE  IID AFE+GW+KP+ P  RTGKKVA+VGS
Sbjct: 92  FTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGS 151

Query: 61  GPSGLGAAHQLNK 73
           GP+GL AA QL +
Sbjct: 152 GPAGLAAADQLAR 164

Length = 471

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score =  136 bits (344), Expect = 4e-40
 Identities = 50/73 (68%), Positives = 60/73 (82%)

Query: 1   FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
           FTGRVCPAPCEGAC LGI+E  V IK+IE  IID  F++GW++P  P+ RTGKKVA+VGS
Sbjct: 92  FTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGS 151

Query: 61  GPSGLGAAHQLNK 73
           GP+GL AA QLN+
Sbjct: 152 GPAGLAAADQLNR 164

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score =  109 bits (275), Expect = 4e-30
 Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 2/76 (2%)

Query: 1   FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIV 58
            TGRVCP    CEGACVLGI E  V I  +E AI D A  +GWI  E+P  RTGKKVA++
Sbjct: 70  ITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVI 129

Query: 59  GSGPSGLGAAHQLNKE 74
           G+GP+GL AA  L++ 
Sbjct: 130 GAGPAGLAAADDLSRA 145

Length = 457

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 94.1 bits (235), Expect = 2e-24
 Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 2   TGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
            GRVCP    CEGACV G     V I  +E  I D A E GW+  +    +TGKKVA++G
Sbjct: 89  CGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAP-KTGKKVAVIG 147

Query: 60  SGPSGLGAAHQL 71
           +GP+GL AAH+L
Sbjct: 148 AGPAGLTAAHRL 159

Length = 457

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 84.9 bits (211), Expect = 4e-21
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 3   GRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGP 62
           GRVC  PCE  C  G  + AV I  +E  + D+A   GW K   P   TGK+VA++G GP
Sbjct: 89  GRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGW-KFPAPAPDTGKRVAVIGGGP 147

Query: 63  SGLGAAHQLNK 73
           +GL AA+ L +
Sbjct: 148 AGLSAAYHLRR 158

Length = 564

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 79.1 bits (195), Expect = 4e-19
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   TGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIP-TLRTGKKVAIV 58
            GRVCP    CEGAC L     AVTI N+E  I D A   GW +P++   + TGK+VA++
Sbjct: 89  CGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGW-RPDLSHVVPTGKRVAVI 147

Query: 59  GSGPSGLGAAHQLNKEAGTELI 80
           G+GP+GL  A  L + AG +++
Sbjct: 148 GAGPAGLACADILAR-AGVQVV 168

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 72.9 bits (179), Expect = 7e-17
 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 2   TGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLR-TGKKVAIV 58
           TGRVCP    CEGAC L     AVTI NIE  I D A  +GW +P++  +  + K+VAI+
Sbjct: 275 TGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGW-RPDLSQVTKSDKRVAII 333

Query: 59  GSGPSGLGAAHQL 71
           G+GP+GL  A  L
Sbjct: 334 GAGPAGLACADVL 346

Length = 654

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 2   TGRVCP--APCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
            GRVCP  + CEG CVLGI    V I  +E  + D A E G I       + GKKVA++G
Sbjct: 89  CGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENG-IDLSETEEKKGKKVAVIG 147

Query: 60  SGPSGLGAAHQLNK 73
           SGP+GL  A  L K
Sbjct: 148 SGPAGLTCAGDLAK 161

Length = 464

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 10/74 (13%)

Query: 3   GRVCPAPCEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPE--IPTLR--TGKKVAI 57
           GR+CPAPCE AC   G++EP V+I    CA+  +A ++     E  IP     +GKKVAI
Sbjct: 144 GRICPAPCEEACRRHGVDEP-VSI----CALKRYAADRDMESAERYIPERAPKSGKKVAI 198

Query: 58  VGSGPSGLGAAHQL 71
           +G+GP+GL AA+ L
Sbjct: 199 IGAGPAGLTAAYYL 212

Length = 652

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 2   TGRVCP--APCEGACVLGI-NEPAVTIKNIECAIIDHAFEQGWIKPEIPTL--RTGKKVA 56
            GRVCP    CE  C+ G   E AV I  +E  + D+  E G     +P +  + GKKVA
Sbjct: 378 CGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESG--NISVPEVAEKNGKKVA 435

Query: 57  IVGSGPSGLGAAHQLNK 73
           ++GSGP+GL  A  L K
Sbjct: 436 VIGSGPAGLSFAGDLAK 452

Length = 752

>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 3   GRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGK-KVAIVG 59
           GRVCP    CEGAC L  +  AV+I N+E  I D A   GW +P++  +     KVA++G
Sbjct: 259 GRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGW-RPDVSKVVPRSEKVAVIG 317

Query: 60  SGPSGLGAAHQLNKEAGTEL 79
           +GP+GLG A  L + AG ++
Sbjct: 318 AGPAGLGCADILAR-AGVQV 336

Length = 639

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 56.7 bits (137), Expect = 4e-11
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 3   GRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIK-PEIPTLRTGKKVAIVGSG 61
           GRVC   CE  C +G     + I+ ++  I+D+   + + +  +    +  KKVAIVGSG
Sbjct: 233 GRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSG 292

Query: 62  PSGLGAAHQLNK 73
           P+GL AA+ L  
Sbjct: 293 PAGLSAAYFLAT 304

Length = 604

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 2   TGRVCPAP--CEGACVLGINEP----AVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKV 55
            GRVCP    CEG C +G         V+I  +E  + D   + G          T KKV
Sbjct: 77  CGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKV 136

Query: 56  AIVGSGPSGLGAAHQLNK 73
           A++G+GP+GL  A +L K
Sbjct: 137 AVIGAGPAGLACASELAK 154

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 47.3 bits (113), Expect = 7e-08
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 2   TGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHA---FEQGWIKPEIPTLRTGKKVAIV 58
           TG +C   C+  C     + AV I+ ++   ++     ++Q W KP    + + KKVA++
Sbjct: 488 TGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKP--AGIGSRKKVAVI 545

Query: 59  GSGPSGLGAAHQLNKE 74
           G+GP+GL AA+ L + 
Sbjct: 546 GAGPAGLAAAYFLARA 561

Length = 1019

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 3   GRVCP--APCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
           GRVCP    CE  C++     +V I  +E  + D+A  +    P     +   KVAI GS
Sbjct: 381 GRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFS--KKLGKVAICGS 438

Query: 61  GPSGLGAAHQLNK 73
           GP+GL AA  L K
Sbjct: 439 GPAGLAAAADLVK 451

Length = 1006

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 2   TGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGK-KVAIVGS 60
           TG +C   C+  C     + +V I+ ++    +  +++   +   P  ++   KVA++G+
Sbjct: 486 TGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGA 545

Query: 61  GPSGLGAAHQLNKE 74
           GP+GL A + L + 
Sbjct: 546 GPAGLSAGYFLARA 559

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 50 RTGKKVAIVGSGPSGLGAA 68
           TGKKVAI+G+GP+GL AA
Sbjct: 16 PTGKKVAIIGAGPAGLAAA 34

Length = 352

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGT 77
           K+AI+G G +GL AA++L K    
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPD 25

Length = 444

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 12/20 (60%), Positives = 16/20 (80%)

Query: 54 KVAIVGSGPSGLGAAHQLNK 73
          K+AIVG G +GL AA++L K
Sbjct: 1  KIAIVGGGIAGLAAAYRLAK 20

Length = 434

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 17  GINEPAVTIKNIECAI-----IDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGL------ 65
           G  E A  +K +E A+     +  AFE+   + +   L T   + IVG GP+G+      
Sbjct: 118 GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLT---IVIVGGGPTGVELAGEL 174

Query: 66  -GAAHQLNKEAGTELIK 81
               H+L K+   +  +
Sbjct: 175 AERLHRLLKKFRVDPSE 191

Length = 405

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 23/88 (26%)

Query: 2   TGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQG-------------WIKPEI 46
           TGRVCP    C+G C     +  + I  +E  +  H                  W     
Sbjct: 249 TGRVCPQELQCQGVCTH--TKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVK 306

Query: 47  PTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
           P       +A+VGSGPSGL  A+ L  E
Sbjct: 307 P------PIAVVGSGPSGLINAYLLAVE 328

Length = 944

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47 PTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
            + T   VAI+G+G SGL AA+ L + 
Sbjct: 3  VGVATHTDVAIIGAGQSGLAAAYALKQA 30

Length = 443

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 55 VAIVGSGPSGLGAAHQLNKE 74
          VAIVG+GPSGL AA+ L K 
Sbjct: 28 VAIVGAGPSGLTAAYYLAKA 47

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.87
PRK12831	464	putative oxidoreductase; Provisional	99.87
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.86
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.85
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.85
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.84
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.84
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.84
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.83
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.82
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.81
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.81
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.79
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.79
KOG0399|consensus	2142		99.79
PRK13984	604	putative oxidoreductase; Provisional	99.77
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.75
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	99.08
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.56
KOG0029|consensus	501		98.55
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.52
PLN02487	569	zeta-carotene desaturase	98.51
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.51
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.5
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.47
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.46
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.45
PLN02852	491	ferredoxin-NADP+ reductase	98.45
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.45
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.43
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.42
PRK07233	434	hypothetical protein; Provisional	98.42
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.42
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.41
PRK10262	321	thioredoxin reductase; Provisional	98.4
PRK07045	388	putative monooxygenase; Reviewed	98.39
PRK06475	400	salicylate hydroxylase; Provisional	98.39
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.39
PRK10157	428	putative oxidoreductase FixC; Provisional	98.38
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.38
PRK06847	375	hypothetical protein; Provisional	98.38
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.37
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.37
PRK07236	386	hypothetical protein; Provisional	98.37
PRK09126	392	hypothetical protein; Provisional	98.37
PRK10015	429	oxidoreductase; Provisional	98.37
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.36
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.36
PRK06753	373	hypothetical protein; Provisional	98.35
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.35
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.35
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.35
PRK07208	479	hypothetical protein; Provisional	98.34
PRK08163	396	salicylate hydroxylase; Provisional	98.34
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.34
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.34
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.34
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.33
PRK08013	400	oxidoreductase; Provisional	98.33
PLN02268	435	probable polyamine oxidase	98.32
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.32
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.31
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.31
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.3
PRK06126	545	hypothetical protein; Provisional	98.3
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.29
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.29
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.29
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.29
PRK07588	391	hypothetical protein; Provisional	98.29
PRK06184	502	hypothetical protein; Provisional	98.29
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.28
PLN02576	496	protoporphyrinogen oxidase	98.28
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.28
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.28
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.27
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.27
PLN02463	447	lycopene beta cyclase	98.27
PRK08244	493	hypothetical protein; Provisional	98.26
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.26
PRK07538	413	hypothetical protein; Provisional	98.25
PRK06185	407	hypothetical protein; Provisional	98.25
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.25
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.24
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.24
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.24
PRK06116	450	glutathione reductase; Validated	98.23
PRK05868	372	hypothetical protein; Validated	98.23
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.22
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.22
PLN02612	567	phytoene desaturase	98.22
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.22
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.21
COG3349	485	Uncharacterized conserved protein [Function unknow	98.21
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.2
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.2
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.2
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.2
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.18
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.18
PTZ00188	506	adrenodoxin reductase; Provisional	98.18
PRK06834	488	hypothetical protein; Provisional	98.17
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.17
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.17
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.16
PLN02985	514	squalene monooxygenase	98.16
PLN02697	529	lycopene epsilon cyclase	98.15
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.15
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.14
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.14
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.13
COG2081	408	Predicted flavoproteins [General function predicti	98.13
KOG1399|consensus	448		98.13
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.13
PRK07190	487	hypothetical protein; Provisional	98.12
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.12
PRK06370	463	mercuric reductase; Validated	98.12
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.11
PRK14694	468	putative mercuric reductase; Provisional	98.11
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.11
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.1
PRK11445	351	putative oxidoreductase; Provisional	98.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.1
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.1
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.09
PTZ00367	567	squalene epoxidase; Provisional	98.09
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.08
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.07
TIGR02053	463	MerA mercuric reductase. This model represents the	98.07
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.06
KOG2614|consensus	420		98.06
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.05
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.04
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.04
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.03
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.03
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.03
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.02
PLN02529	738	lysine-specific histone demethylase 1	98.02
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.02
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.02
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.01
PTZ00052	499	thioredoxin reductase; Provisional	98.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.0
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.0
PLN02661	357	Putative thiazole synthesis	98.0
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.99
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.99
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.99
PRK08274	466	tricarballylate dehydrogenase; Validated	97.98
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.98
PRK13748	561	putative mercuric reductase; Provisional	97.98
PRK08294	634	phenol 2-monooxygenase; Provisional	97.98
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.96
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.96
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.95
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.95
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.93
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.91
PRK06996	398	hypothetical protein; Provisional	97.91
PRK08401	466	L-aspartate oxidase; Provisional	97.91
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.9
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.9
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.87
PRK07121	492	hypothetical protein; Validated	97.87
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.86
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.86
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.85
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.84
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.84
PLN02507	499	glutathione reductase	97.83
PLN02568	539	polyamine oxidase	97.82
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.82
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.82
PLN02676	487	polyamine oxidase	97.81
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
PTZ00058	561	glutathione reductase; Provisional	97.8
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.79
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.79
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.79
PLN02546	558	glutathione reductase	97.78
PRK14727	479	putative mercuric reductase; Provisional	97.73
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.72
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.71
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.71
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.71
PRK07804	541	L-aspartate oxidase; Provisional	97.7
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.7
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.7
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.69
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.69
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.67
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.66
PRK12839	572	hypothetical protein; Provisional	97.66
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.65
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.65
PLN03000	881	amine oxidase	97.65
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.64
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.64
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.63
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.63
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.63
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.63
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.62
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.62
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.62
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.6
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.59
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.58
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.56
KOG1276|consensus	491		97.56
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.55
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.55
PRK05257	494	malate:quinone oxidoreductase; Validated	97.53
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.53
PRK08275	554	putative oxidoreductase; Provisional	97.53
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.52
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.52
KOG0685|consensus	498		97.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.52
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.52
KOG1800|consensus	468		97.5
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.47
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.45
PLN02815	594	L-aspartate oxidase	97.44
KOG2820|consensus	399		97.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.43
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.42
PRK02106	560	choline dehydrogenase; Validated	97.42
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.4
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.39
PRK08071	510	L-aspartate oxidase; Provisional	97.39
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.38
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.38
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.38
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.38
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.37
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.37
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.37
PRK06175	433	L-aspartate oxidase; Provisional	97.36
PRK07395	553	L-aspartate oxidase; Provisional	97.36
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.36
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.34
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.34
KOG2415|consensus	621		97.33
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.33
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.33
PLN02976	1713	amine oxidase	97.32
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.31
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.3
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.29
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.28
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.27
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.27
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.27
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.22
PRK09077	536	L-aspartate oxidase; Provisional	97.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.2
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.11
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.11
PRK09897	534	hypothetical protein; Provisional	97.1
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.07
COG3573	552	Predicted oxidoreductase [General function predict	97.06
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.01
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.01
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.01
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.98
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.98
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.95
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.95
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.95
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.94
PRK07512	513	L-aspartate oxidase; Provisional	96.92
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.92
COG0579	429	Predicted dehydrogenase [General function predicti	96.88
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.87
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.85
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.82
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.8
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.8
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.75
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.75
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.74
TIGR02053	463	MerA mercuric reductase. This model represents the	96.73
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.71
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.71
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.7
PRK12831	464	putative oxidoreductase; Provisional	96.68
PRK06370	463	mercuric reductase; Validated	96.67
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.67
KOG0404|consensus	322		96.66
KOG1298|consensus	509		96.66
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.65
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.65
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.65
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.65
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.64
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.62
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.6
PRK07846	451	mycothione reductase; Reviewed	96.59
PRK13748	561	putative mercuric reductase; Provisional	96.59
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.57
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.57
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.57
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.56
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.55
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.54
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.53
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.52
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PRK14694	468	putative mercuric reductase; Provisional	96.51
PRK10262	321	thioredoxin reductase; Provisional	96.5
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.5
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.49
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.49
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.49
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.48
PRK07846	451	mycothione reductase; Reviewed	96.48
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.47
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.46
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.45
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.44
PTZ00052	499	thioredoxin reductase; Provisional	96.44
PRK14727	479	putative mercuric reductase; Provisional	96.41
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.41
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.4
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.4
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.39
PRK06116	450	glutathione reductase; Validated	96.39
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.37
PLN02785	587	Protein HOTHEAD	96.37
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.36
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.35
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.35
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.34
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.34
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.3
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.29
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.28
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.27
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.24
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.2
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.19
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.17
KOG2852|consensus	380		96.15
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.15
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.11
KOG1399|consensus	448		96.1
PLN02507	499	glutathione reductase	96.09
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.07
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.06
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.04
KOG1335|consensus	506		96.02
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.02
PTZ00058	561	glutathione reductase; Provisional	95.96
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.96
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.94
PRK11730	715	fadB multifunctional fatty acid oxidation complex	95.93
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.92
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.91
PRK04148	134	hypothetical protein; Provisional	95.91
KOG2960|consensus	328		95.89
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.84
PLN02546	558	glutathione reductase	95.81
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.78
KOG2311|consensus	679		95.77
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.76
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.75
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.75
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	95.75
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.71
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.67
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.66
KOG3923|consensus	342		95.65
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.64
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.62
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.58
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.57
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.57
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.56
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.56
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.55
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.51
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.49
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.48
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.46
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.46
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.45
KOG4716|consensus	503		95.39
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.36
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	95.35
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.33
KOG4254|consensus	561		95.31
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.27
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.27
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.23
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	95.22
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.19
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.19
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.17
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.13
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.12
KOG2844|consensus	856		95.11
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.08
PRK13984	604	putative oxidoreductase; Provisional	95.04
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	94.99
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	94.98
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.96
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.93
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.87
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	94.87
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.84
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.83
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	94.8
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.8
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.78
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.77
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.75
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.74
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.74
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.7
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.65
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.64
KOG2404|consensus	477		94.64
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.6
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.59
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.58
PRK07417	279	arogenate dehydrogenase; Reviewed	94.58
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.55
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	94.52
PRK08017	256	oxidoreductase; Provisional	94.46
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.44
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.44
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.43
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.43
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.43
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.42
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.38
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.37
PRK06223	307	malate dehydrogenase; Reviewed	94.35
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	94.33
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.27
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.21
KOG2665|consensus	453		94.2
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.19
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.16
PLN02572	442	UDP-sulfoquinovose synthase	94.16
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.12
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.12
PRK07774	250	short chain dehydrogenase; Provisional	94.11
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.09
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.09
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.09
KOG2495|consensus	491		94.08
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.06
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.05
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.02
PLN02214	342	cinnamoyl-CoA reductase	94.02
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.01
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.0
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.0
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.97
PRK06057	255	short chain dehydrogenase; Provisional	93.96
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.93
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	93.93
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.93
PRK09496	453	trkA potassium transporter peripheral membrane com	93.93
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.88
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.87
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.86
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.86
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.85
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	93.82
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	93.77
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	93.76
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.75
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.74
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.73
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.73
PLN02583	297	cinnamoyl-CoA reductase	93.72
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.68
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.63
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.61
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	93.6
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.59
PTZ00117	319	malate dehydrogenase; Provisional	93.58
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.58
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.57
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.57
PRK10669	558	putative cation:proton antiport protein; Provision	93.57
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	93.56

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.87  E-value=3.9e-22  Score=145.80  Aligned_cols=80  Identities=66%  Similarity=1.105  Sum_probs=70.4

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||||+|||||+.+|++...++||+|+.+++|+.++.....|..+..+.+...++|+|||+|+||+++|.+|+++|++|+|
T Consensus        92 ~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~v  171 (471)
T PRK12810         92 FTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTV  171 (471)
T ss_pred             HhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            69999999999999999999999999999999998887776222233445678999999999999999999999999987

>PRK12831 putative oxidoreductase; Provisional

Probab=99.87  E-value=5.3e-22  Score=145.25  Aligned_cols=79  Identities=44%  Similarity=0.686  Sum_probs=71.4

Q ss_pred             CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ||||+|||  |||.+|+++..++||+|+.+++|+.++....+|.. ..+.+.+.++|+|||+||||+++|++|+++|++|
T Consensus        88 ~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~-~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V  166 (464)
T PRK12831         88 VCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDV  166 (464)
T ss_pred             hhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCC-CCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeE
Confidence            69999998  99999999999999999999999999988877643 2344567899999999999999999999999999


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      +|
T Consensus       167 ~v  168 (464)
T PRK12831        167 TI  168 (464)
T ss_pred             EE
Confidence            87

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.86  E-value=1.2e-21  Score=153.67  Aligned_cols=80  Identities=23%  Similarity=0.444  Sum_probs=67.4

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCC-CccCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIP-TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      |||||||||||.+|+|+..++||+|+.+++++.++...........+ .+.+.++|+||||||||++||++|+++|++|+
T Consensus       485 icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VT  564 (1012)
T TIGR03315       485 ITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVT  564 (1012)
T ss_pred             HhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            69999999999999999999999999999999998765422111111 23456899999999999999999999999998


Q ss_pred             e
Q psy11001         80 I   80 (81)
Q Consensus        80 v   80 (81)
                      |
T Consensus       565 V  565 (1012)
T TIGR03315       565 V  565 (1012)
T ss_pred             E
Confidence            7

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.85  E-value=2.3e-21  Score=146.46  Aligned_cols=80  Identities=44%  Similarity=0.723  Sum_probs=70.6

Q ss_pred             CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ||||+||+  |||.+|+++..++||+|+.||+|+.++.....|.+...+.+.++++|+||||||||+++|.+|+++|++|
T Consensus       274 ~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V  353 (654)
T PRK12769        274 ITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAV  353 (654)
T ss_pred             HhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeE
Confidence            69999994  8999999999999999999999999999888875433223356789999999999999999999999999


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      +|
T Consensus       354 ~V  355 (654)
T PRK12769        354 TV  355 (654)
T ss_pred             EE
Confidence            87

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.85  E-value=3.3e-21  Score=141.13  Aligned_cols=80  Identities=43%  Similarity=0.719  Sum_probs=71.0

Q ss_pred             CccccCc--cchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCP--APCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~--~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ||||+||  +||+.+|+++..++||+|+.|++|+.++.....|.+...+.+.+.++|+|||+||+|+++|.+|+++|++|
T Consensus        88 ~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V  167 (467)
T TIGR01318        88 ICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQV  167 (467)
T ss_pred             hhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence            6999999  49999999999999999999999999998887776543334457789999999999999999999999998


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      +|
T Consensus       168 ~i  169 (467)
T TIGR01318       168 VV  169 (467)
T ss_pred             EE
Confidence            86

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.85  E-value=2.6e-21  Score=151.79  Aligned_cols=80  Identities=26%  Similarity=0.488  Sum_probs=68.1

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCC-CccCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIP-TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ||||+||||||.+|+|+..++||+|+.+++++.+............+ .+.++++|+||||||||+++|++|+++|++|+
T Consensus       487 icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~Vt  566 (1019)
T PRK09853        487 ITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVT  566 (1019)
T ss_pred             HhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            69999999999999999999999999999999988765432111112 24577899999999999999999999999998


Q ss_pred             e
Q psy11001         80 I   80 (81)
Q Consensus        80 v   80 (81)
                      |
T Consensus       567 V  567 (1019)
T PRK09853        567 V  567 (1019)
T ss_pred             E
Confidence            7

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.84  E-value=5.9e-21  Score=144.07  Aligned_cols=80  Identities=40%  Similarity=0.693  Sum_probs=71.9

Q ss_pred             CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ||||+||+  |||.+|+++..++||+|+.||+|+.++...++|.+...+.+.++++|+|||+||+|+++|++|+++|++|
T Consensus       257 ~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~V  336 (639)
T PRK12809        257 ICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQV  336 (639)
T ss_pred             hhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcE
Confidence            69999994  9999999999999999999999999999988886544344456899999999999999999999999999


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      +|
T Consensus       337 tv  338 (639)
T PRK12809        337 DV  338 (639)
T ss_pred             EE
Confidence            87

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.84  E-value=5.1e-21  Score=140.71  Aligned_cols=80  Identities=64%  Similarity=1.133  Sum_probs=71.0

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||||+|||+|+++|+++..++||+|+.+++|+.++.....|..+..+.+...++|+|||+|++|+++|.+|+++|++|+|
T Consensus        92 ~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v  171 (485)
T TIGR01317        92 FTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTV  171 (485)
T ss_pred             HHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            69999999999999999999999999999999998887776544333445668999999999999999999999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.84  E-value=5.3e-21  Score=150.27  Aligned_cols=79  Identities=35%  Similarity=0.518  Sum_probs=69.9

Q ss_pred             CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ||||+|||  |||.+|+++..++||.|+.+|+|+.++....++..+  +.+.+.++|+|||||||||++|.+|+++|++|
T Consensus       379 ~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~--~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~V  456 (1006)
T PRK12775        379 ICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPP--RFSKKLGKVAICGSGPAGLAAAADLVKYGVDV  456 (1006)
T ss_pred             HhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCC--CCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence            69999998  999999999999999999999999999887776432  22345789999999999999999999999999


Q ss_pred             eeC
Q psy11001         79 LIK   81 (81)
Q Consensus        79 ~v~   81 (81)
                      +|.
T Consensus       457 tV~  459 (1006)
T PRK12775        457 TVY  459 (1006)
T ss_pred             EEE
Confidence            873

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.83  E-value=1.6e-20  Score=136.80  Aligned_cols=80  Identities=35%  Similarity=0.611  Sum_probs=70.0

Q ss_pred             CccccCcc--chHHHhhcCC----CCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHc
Q psy11001          1 FTGRVCPA--PCEGACVLGI----NEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKE   74 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~----~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~   74 (81)
                      ||||+|||  +|+.+|+++.    .++||+|+.+++|+.++....++.....+.+.+.++|+|||+|++|+++|.+|+++
T Consensus        76 ~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~  155 (449)
T TIGR01316        76 ICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKA  155 (449)
T ss_pred             HhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHC
Confidence            69999999  9999999887    89999999999999998877665443334456778999999999999999999999


Q ss_pred             CCCeee
Q psy11001         75 AGTELI   80 (81)
Q Consensus        75 g~~v~v   80 (81)
                      |++|+|
T Consensus       156 G~~V~v  161 (449)
T TIGR01316       156 GHSVTV  161 (449)
T ss_pred             CCcEEE
Confidence            999987

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.82  E-value=4.9e-20  Score=139.51  Aligned_cols=80  Identities=36%  Similarity=0.532  Sum_probs=68.5

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||||+|||||++.|++...++|+.|..+++|..++.....+.....+.+...++|+|||+||||+++|.+|+++|++|+|
T Consensus       142 ~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv  221 (652)
T PRK12814        142 ILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTI  221 (652)
T ss_pred             eeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            69999999999999999999999999999999988766443322222345678999999999999999999999999987

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.81  E-value=4e-20  Score=144.69  Aligned_cols=79  Identities=25%  Similarity=0.497  Sum_probs=65.2

Q ss_pred             Ccc-ccCccchHHHhhcCCCCCccchhhHHHHHHHhhH-----------hhCCCCC----CCCCccCCCcEEEECCCHHH
Q psy11001          1 FTG-RVCPAPCEGACVLGINEPAVTIKNIECAIIDHAF-----------EQGWIKP----EIPTLRTGKKVAIVGSGPSG   64 (81)
Q Consensus         1 ~~~-riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~-----------~~~~~~~----~~~~~~~~~~v~viG~G~aG   64 (81)
                      +|| ||||+ ||.+|+++ .++||+|+.+|+|+.+..+           ..+|.+.    ..|.+.++++|+|||+||||
T Consensus       318 ~~G~RVCp~-CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAG  395 (1028)
T PRK06567        318 ATGHRICND-CSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAG  395 (1028)
T ss_pred             hhCCccCcc-hHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHH
Confidence            588 99995 99999999 8999999999999988532           2244321    12345678999999999999


Q ss_pred             HHHHHHHhHcCCCeeeC
Q psy11001         65 LGAAHQLNKEAGTELIK   81 (81)
Q Consensus        65 ~~~A~~L~~~g~~v~v~   81 (81)
                      +++|++|+++||+|+|.
T Consensus       396 LsAA~~La~~Gh~Vtv~  412 (1028)
T PRK06567        396 FSLSYYLLRSGHNVTAI  412 (1028)
T ss_pred             HHHHHHHHhCCCeEEEE
Confidence            99999999999999873

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.81  E-value=5.1e-20  Score=144.08  Aligned_cols=79  Identities=32%  Similarity=0.447  Sum_probs=64.2

Q ss_pred             CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCC------CCCCCC-CccCCCcEEEECCCHHHHHHHHHH
Q psy11001          1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGW------IKPEIP-TLRTGKKVAIVGSGPSGLGAAHQL   71 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~------~~~~~~-~~~~~~~v~viG~G~aG~~~A~~L   71 (81)
                      ||||+|||  +||.+|+++  ++||+|+.+|+|+.++......      .....+ .+.++++|+|||||||||++|++|
T Consensus       248 ~~GrVCp~~~~CE~~C~~~--~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~L  325 (944)
T PRK12779        248 VTGRVCPQELQCQGVCTHT--KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLL  325 (944)
T ss_pred             HhcCcCCCccCHHHhccCC--CcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHH
Confidence            69999999  799999998  6799999999999997554321      110011 234679999999999999999999


Q ss_pred             hHcCCCeeeC
Q psy11001         72 NKEAGTELIK   81 (81)
Q Consensus        72 ~~~g~~v~v~   81 (81)
                      +++||+|+|.
T Consensus       326 ar~G~~VtVf  335 (944)
T PRK12779        326 AVEGFPVTVF  335 (944)
T ss_pred             HHCCCeEEEE
Confidence            9999999873

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.80  E-value=2.1e-19  Score=137.52  Aligned_cols=80  Identities=39%  Similarity=0.591  Sum_probs=68.6

Q ss_pred             CccccCcc--chHHHhhcCCCC-CccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001          1 FTGRVCPA--PCEGACVLGINE-PAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~~-~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ||||+||+  +|+++|++...+ +||+|..+|+++.+......+...+.+.+.+.++|+||||||||+++|.+|+++|++
T Consensus       377 ~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~  456 (752)
T PRK12778        377 VCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYD  456 (752)
T ss_pred             HhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCe
Confidence            69999997  899999999988 899999999999998766543322222345778999999999999999999999999


Q ss_pred             eee
Q psy11001         78 ELI   80 (81)
Q Consensus        78 v~v   80 (81)
                      |+|
T Consensus       457 V~v  459 (752)
T PRK12778        457 VTV  459 (752)
T ss_pred             EEE
Confidence            987

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.79  E-value=2.5e-19  Score=133.43  Aligned_cols=79  Identities=42%  Similarity=0.724  Sum_probs=70.4

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||||+||||||.+|+|+..+.+|.|..++++..++.....|..+. +....+++|+|||+||+|+++|.+|+++|++|+|
T Consensus        87 ~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~-~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v  165 (564)
T PRK12771         87 VMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPA-PAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTI  165 (564)
T ss_pred             HhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            699999999999999999999999999999999988877765432 2345678999999999999999999999999876

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.79  E-value=3.5e-19  Score=129.58  Aligned_cols=79  Identities=47%  Similarity=0.820  Sum_probs=69.2

Q ss_pred             CccccCccc--hHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~~~--C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ||||+|||+  |++.|+++..++|++|+.+++++.++.....+..+. +.+...++|+||||||+|+++|.+|+++|++|
T Consensus        88 ~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V  166 (457)
T PRK11749         88 VCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFK-RAPKTGKKVAVIGAGPAGLTAAHRLARKGYDV  166 (457)
T ss_pred             hhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCC-CCccCCCcEEEECCCHHHHHHHHHHHhCCCeE
Confidence            699999998  999999998899999999999999988877664222 23456789999999999999999999999999


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      +|
T Consensus       167 ~l  168 (457)
T PRK11749        167 TI  168 (457)
T ss_pred             EE
Confidence            87

>KOG0399|consensus

Probab=99.79  E-value=1.1e-19  Score=143.17  Aligned_cols=80  Identities=71%  Similarity=1.244  Sum_probs=77.8

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++||+||+||+++|++|....||.|+.+|+.+.+..++++|..+.+|..+++++|+|||+|||||++|-.|-+.||.|+|
T Consensus      1734 ftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~v 1813 (2142)
T KOG0399|consen 1734 FTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTV 1813 (2142)
T ss_pred             ccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999987

>PRK13984 putative oxidoreductase; Provisional

Probab=99.77  E-value=7.8e-19  Score=131.43  Aligned_cols=80  Identities=33%  Similarity=0.512  Sum_probs=68.5

Q ss_pred             CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCC-CCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001          1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKP-EIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus         1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ||||+||++|+.+|+++..++|+.|+.+++++.+......+... ..+.+.+.++|+|||+|++|+++|..|+++|++|+
T Consensus       231 ~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~  310 (604)
T PRK13984        231 VCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVT  310 (604)
T ss_pred             hhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            69999999999999999999999999999999998765554321 12234567899999999999999999999999998


Q ss_pred             e
Q psy11001         80 I   80 (81)
Q Consensus        80 v   80 (81)
                      |
T Consensus       311 v  311 (604)
T PRK13984        311 V  311 (604)
T ss_pred             E
Confidence            7

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.75  E-value=1.4e-18  Score=127.71  Aligned_cols=80  Identities=54%  Similarity=0.920  Sum_probs=74.9

Q ss_pred             CccccCccc--hHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001          1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus         1 ~~~riC~~~--C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      +|||+||++  |+.+|++...+.|+.|+.+++++.+......|.+..++...+.++|+||||||||+++|..|++.||.|
T Consensus        70 ~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~V  149 (457)
T COG0493          70 ITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDV  149 (457)
T ss_pred             ccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeE
Confidence            699999986  999999998899999999999999999999998877666777899999999999999999999999999


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      ++
T Consensus       150 tv  151 (457)
T COG0493         150 TV  151 (457)
T ss_pred             EE
Confidence            97

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=99.08  E-value=3.2e-11  Score=74.37  Aligned_cols=40  Identities=50%  Similarity=1.002  Sum_probs=30.6

Q ss_pred             CccccCccc--hHHHhhcCCCCCccchhhHHHHHHHhhHhhCC
Q psy11001          1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGW   41 (81)
Q Consensus         1 ~~~riC~~~--C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~   41 (81)
                      ||||+||++  ||.+|+++ .++||+|+.|++|+.++..+++|
T Consensus        70 vcGrvCp~p~~Ce~~C~r~-~~~pV~I~~l~r~~~d~~~~~~~  111 (111)
T PF14691_consen   70 VCGRVCPHPKQCESACRRG-KGEPVAIRALERFIADYALEEGW  111 (111)
T ss_dssp             HHHHH--GGGSGGGG-GGG-ST-S--HHHHHHHHHHHHHHHT-
T ss_pred             cccCCCCCcchHHHHccCC-CCCCCcHHHHHHHHHHHHHHcCC
Confidence            589999998  99999999 44999999999999999999887

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.56  E-value=9.3e-08  Score=65.74  Aligned_cols=51  Identities=37%  Similarity=0.356  Sum_probs=38.1

Q ss_pred             cchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         23 VTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        23 i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +....+-+++.+..++.-.       ....-+|+|+|+|||||+||++|+++|++|.|
T Consensus         8 ~~E~~itraI~~~~~~~l~-------~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i   58 (262)
T COG1635           8 LREVKITRAITERYFEDLL-------DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAI   58 (262)
T ss_pred             hhhHHHHHHHHHHHHHHHH-------hhhhccEEEECcCcchHHHHHHHHhCCceEEE
Confidence            3334455667766665431       12345899999999999999999999999987

>KOG0029|consensus

Probab=98.55  E-value=9.2e-08  Score=71.53  Aligned_cols=33  Identities=36%  Similarity=0.465  Sum_probs=30.0

Q ss_pred             CccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+.++|+|||||+|||+||.+|.+.|++|+|
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~V   43 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLV   43 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            345678999999999999999999999999987

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.52  E-value=8.2e-08  Score=65.89  Aligned_cols=28  Identities=46%  Similarity=0.615  Sum_probs=24.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+||||||+|+++|..|+++|++|+|
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i   29 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTI   29 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhccccccc
Confidence            4799999999999999999999999987

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02487 zeta-carotene desaturase

Probab=98.51  E-value=2.5e-07  Score=70.13  Aligned_cols=53  Identities=26%  Similarity=0.401  Sum_probs=42.2

Q ss_pred             hHHHHHHHhhHhh--CCCCCCCCCcc--CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         27 NIECAIIDHAFEQ--GWIKPEIPTLR--TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        27 ~l~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+++.+.....  .|.++.+ ...  +.++|+|||+|++|+++|++|+++|++|+|
T Consensus        47 ~l~r~~~d~~~~~~~~~~~~~~-~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i  103 (569)
T PLN02487         47 SLDSNVSDMSVNAPKGLFPPEP-EAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDI  103 (569)
T ss_pred             HHHHHhhhhhccccccccCCCC-cccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEE
Confidence            7889999888766  5554332 222  345999999999999999999999999987

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.51  E-value=2.4e-07  Score=63.82  Aligned_cols=47  Identities=40%  Similarity=0.463  Sum_probs=35.8

Q ss_pred             hHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         27 NIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+-+.+.+..++.- .      ....++|+|||+||||+++|++|++.|++|+|
T Consensus         7 ~~~~~~~~~~~~~~-~------~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~l   53 (257)
T PRK04176          7 KITRAIVEEYFEKL-L------DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAV   53 (257)
T ss_pred             HHHHHHHHHHHHHH-H------HhccCCEEEECccHHHHHHHHHHHhCCCeEEE
Confidence            45566666655432 1      12347899999999999999999999999987

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.50  E-value=1.3e-07  Score=53.25  Aligned_cols=24  Identities=42%  Similarity=0.502  Sum_probs=22.1

Q ss_pred             EECCCHHHHHHHHHHhHcCCCeee
Q psy11001         57 IVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        57 viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |||+|++|+++|+.|+++|++|+|
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v   24 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTV   24 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEE
Confidence            899999999999999999999987

...

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.47  E-value=1.7e-07  Score=66.92  Aligned_cols=28  Identities=36%  Similarity=0.609  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+||||||||+++|+.|++.|++|+|
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l   28 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETIL   28 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            4799999999999999999999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.46  E-value=1.8e-07  Score=67.29  Aligned_cols=29  Identities=41%  Similarity=0.593  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+||||++||+.|+++|++|+|
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~Vlv   31 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLV   31 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEE
Confidence            47899999999999999999999999987

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.45  E-value=1.6e-07  Score=64.10  Aligned_cols=30  Identities=43%  Similarity=0.512  Sum_probs=24.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+||||+++|++|+++|++|.|
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v   45 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAV   45 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEE
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEE
Confidence            347899999999999999999999999987

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.45  E-value=2.9e-07  Score=68.72  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=29.0

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhH--cCCCeeeC
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNK--EAGTELIK   81 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~--~g~~v~v~   81 (81)
                      ....++|+||||||||+++|.+|++  .|++|+|.
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~   57 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDII   57 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEE
Confidence            3456899999999999999999997  79999873

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.45  E-value=3.2e-07  Score=67.55  Aligned_cols=32  Identities=31%  Similarity=0.478  Sum_probs=29.1

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....++|+||||||||+++|+.|+++|++|+|
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~Vll   67 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFL   67 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            34568999999999999999999999999986

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.43  E-value=2.8e-07  Score=65.79  Aligned_cols=29  Identities=34%  Similarity=0.352  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||+|+++|..|+++|++|+|
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v   46 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIAL   46 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEE
Confidence            57999999999999999999999999987

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.42  E-value=2.7e-07  Score=66.21  Aligned_cols=28  Identities=46%  Similarity=0.671  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      ++|+|||||+|||+||+.|++.|  ++|+|
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~v   30 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITL   30 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEE
Confidence            47999999999999999999988  88887

>PRK07233 hypothetical protein; Provisional

Probab=98.42  E-value=2.7e-07  Score=65.74  Aligned_cols=27  Identities=44%  Similarity=0.613  Sum_probs=25.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||+|||++|++|+++|++|+|
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~v   27 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTV   27 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            689999999999999999999999987

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.42  E-value=5.4e-07  Score=62.06  Aligned_cols=30  Identities=43%  Similarity=0.541  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+||||+++|+.|+++|++|+|
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~v   49 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCV   49 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            357899999999999999999999999887

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.41  E-value=3.3e-07  Score=61.89  Aligned_cols=28  Identities=36%  Similarity=0.566  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|+++|++|+|
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~v   28 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLL   28 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999987

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.40  E-value=4.1e-07  Score=63.38  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+||||+++|..|+++|+++++
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~   34 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVL   34 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence            457899999999999999999999998875

>PRK07045 putative monooxygenase; Reviewed

Probab=98.39  E-value=3.4e-07  Score=65.11  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+||||||+|+++|..|+++|++|+|
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v   33 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTV   33 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEE
Confidence            46899999999999999999999999987

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.39  E-value=4e-07  Score=65.24  Aligned_cols=29  Identities=31%  Similarity=0.345  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i   30 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGWAVTI   30 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            37899999999999999999999999987

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.39  E-value=3.5e-07  Score=62.84  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=25.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|++|+++|++|+++|++|+|
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l   27 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTL   27 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            589999999999999999999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.38  E-value=4.1e-07  Score=66.25  Aligned_cols=29  Identities=34%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||+++|+.|+++|++|+|
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~l   33 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLV   33 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            47999999999999999999999999987

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.38  E-value=3.5e-07  Score=67.73  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+.||++|..|+++|++|+|
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~V   31 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTV   31 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEE
Confidence            47899999999999999999999999987

>PRK06847 hypothetical protein; Provisional

Probab=98.38  E-value=4.7e-07  Score=63.80  Aligned_cols=29  Identities=41%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v   32 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDL   32 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999987

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.37  E-value=4.8e-07  Score=61.42  Aligned_cols=28  Identities=39%  Similarity=0.548  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||+||+++|..|+++|++|+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~l   28 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLI   28 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            4799999999999999999999999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.37  E-value=4.3e-07  Score=65.54  Aligned_cols=28  Identities=36%  Similarity=0.604  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+||||||||+++|+.|+++|++|+|
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~l   28 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFL   28 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEE
Confidence            4799999999999999999999999987

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07236 hypothetical protein; Provisional

Probab=98.37  E-value=5e-07  Score=64.37  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||++|+++|..|+++|++|+|
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v   34 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDV   34 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999999999987

>PRK09126 hypothetical protein; Provisional

Probab=98.37  E-value=4.3e-07  Score=64.40  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+||||||+|+++|..|+++|++|+|
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v   31 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTL   31 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            6899999999999999999999999987

>PRK10015 oxidoreductase; Provisional

Probab=98.37  E-value=4.6e-07  Score=66.09  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||+++|+.|+++|++|+|
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~Vll   33 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLV   33 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            47999999999999999999999999987

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.36  E-value=4.4e-07  Score=64.62  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+||||||+|+++|+.|+++|++|+|
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~l   34 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVAL   34 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEE
Confidence            357899999999999999999999999987

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.36  E-value=5.2e-07  Score=64.32  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+||||||+|+++|..|+++|++|+|
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l   31 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAV   31 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            5899999999999999999999999987

>PRK06753 hypothetical protein; Provisional

Probab=98.35  E-value=4.9e-07  Score=63.74  Aligned_cols=27  Identities=37%  Similarity=0.562  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++|+++|..|+++|++|+|
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v   28 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKV   28 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            699999999999999999999999987

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.35  E-value=4.4e-07  Score=64.89  Aligned_cols=28  Identities=29%  Similarity=0.332  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|+++|++|+|
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v   30 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLL   30 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999999999987

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.35  E-value=5.2e-07  Score=63.83  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+||||||+|+++|+.|++.|++|+|
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v   33 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVAL   33 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            46899999999999999999999999987

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.35  E-value=4.3e-07  Score=63.79  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=25.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+||||||+|+++|+.|+++|++|+|
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v   27 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIAL   27 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEE
Confidence            589999999999999999999999987

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07208 hypothetical protein; Provisional

Probab=98.34  E-value=6e-07  Score=65.50  Aligned_cols=29  Identities=41%  Similarity=0.583  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+|||++|++|+++|++|+|
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v   32 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTV   32 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.34  E-value=6.4e-07  Score=63.62  Aligned_cols=29  Identities=34%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v   32 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKL   32 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999987

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.34  E-value=6e-07  Score=57.93  Aligned_cols=27  Identities=44%  Similarity=0.767  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||+||+++|.+|++.|+++++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~i   27 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLI   27 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEE
Confidence            689999999999999999999999886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.34  E-value=4.8e-07  Score=66.18  Aligned_cols=28  Identities=32%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||||||.||+.|+++|++|+|
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~v   28 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLV   28 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            5899999999999999999999999987

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.34  E-value=5.2e-07  Score=64.05  Aligned_cols=30  Identities=27%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|..|+++|++|+|
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~l   33 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAV   33 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEE
Confidence            347999999999999999999999999987

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.33  E-value=7.1e-07  Score=65.98  Aligned_cols=31  Identities=35%  Similarity=0.623  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||+|||++|.+|++.|++|+|
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~v   38 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVV   38 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEE
Confidence            3468999999999999999999999999887

>PRK08013 oxidoreductase; Provisional

Probab=98.33  E-value=6.2e-07  Score=64.34  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ++|+||||||+|+++|+.|+++|++|+|.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~vi   32 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVL   32 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEE
Confidence            68999999999999999999999999873

>PLN02268 probable polyamine oxidase

Probab=98.32  E-value=6.1e-07  Score=64.77  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||.|||+||+.|.++|++|+|
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~v   28 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTL   28 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            4799999999999999999999999887

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.32  E-value=7e-07  Score=64.08  Aligned_cols=28  Identities=43%  Similarity=0.653  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+||||||+|+++|..|+++|++|+|
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v   30 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVI   30 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEE
Confidence            6899999999999999999999999987

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.31  E-value=6.7e-07  Score=63.29  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      ..+|+||||||+|+++|+.|+++   |++|+|
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v   34 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVAL   34 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEE
Confidence            36899999999999999999998   999987

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.31  E-value=1.5e-06  Score=64.59  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++||||||||+++|.+|++.|++|+|
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~l  239 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGI  239 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            457999999999999999999999999986

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.30  E-value=8e-07  Score=62.62  Aligned_cols=28  Identities=36%  Similarity=0.404  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||.+|+++|++|+++|++|+|
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l   28 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLL   28 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999987

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06126 hypothetical protein; Provisional

Probab=98.30  E-value=9.3e-07  Score=65.73  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ..+|+||||||+|+++|..|+++|++|+|.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~vi   36 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILV   36 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence            478999999999999999999999999873

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.29  E-value=9e-07  Score=63.41  Aligned_cols=30  Identities=37%  Similarity=0.460  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ..+|+||||||+|+++|..|++.|++|+|.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~   31 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLL   31 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence            368999999999999999999999999873

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.29  E-value=9.5e-07  Score=65.72  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+||||||||+++|.+|++.|++|+|
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~l  240 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAM  240 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            3458999999999999999999999999986

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.29  E-value=6.5e-07  Score=63.22  Aligned_cols=27  Identities=33%  Similarity=0.380  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +|+||||||+|+++|..|+++| ++|+|
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v   28 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIAL   28 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEE
Confidence            5899999999999999999999 99987

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.29  E-value=8.8e-07  Score=63.31  Aligned_cols=28  Identities=32%  Similarity=0.558  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+||+|+++|..|+++|++|+|
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v   30 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVV   30 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEE
Confidence            6799999999999999999999999987

>PRK07588 hypothetical protein; Provisional

Probab=98.29  E-value=9.1e-07  Score=63.00  Aligned_cols=27  Identities=33%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++|+++|..|+++|++|+|
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v   28 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTL   28 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEE
Confidence            799999999999999999999999987

>PRK06184 hypothetical protein; Provisional

Probab=98.29  E-value=9.7e-07  Score=65.12  Aligned_cols=29  Identities=34%  Similarity=0.517  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+||||||+|+++|..|+++|++|+|
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~v   31 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRL   31 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            36899999999999999999999999987

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.28  E-value=9.6e-07  Score=62.16  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.+|+++|++|+++|++|++
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~v   32 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTV   32 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            357999999999999999999999998886

>PLN02576 protoporphyrinogen oxidase

Probab=98.28  E-value=1.1e-06  Score=64.39  Aligned_cols=30  Identities=43%  Similarity=0.601  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      ..++|+|||||+|||++|++|+++ |++|+|
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~v   41 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLV   41 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEE
Confidence            346899999999999999999999 999987

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.28  E-value=1e-06  Score=66.11  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||+++|.+|+++|++|+|
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~l   32 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLI   32 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999987

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.28  E-value=9.1e-07  Score=62.76  Aligned_cols=29  Identities=31%  Similarity=0.636  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|+.|+++|++|+|
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~l   35 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVAL   35 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEE
Confidence            46899999999999999999999999987

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=9.8e-07  Score=62.43  Aligned_cols=29  Identities=38%  Similarity=0.458  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .++|+||||||||++||.+++|.|++ ++|
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li   32 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLI   32 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            47899999999999999999999988 443

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.27  E-value=9.7e-07  Score=63.28  Aligned_cols=30  Identities=30%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .++|+||||||+|+++|..|+++|++|+|.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~vi   33 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVI   33 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEE
Confidence            368999999999999999999999999873

>PLN02463 lycopene beta cyclase

Probab=98.27  E-value=1.5e-06  Score=64.12  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....++|+||||||||+++|..|+++|++|.|
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~l   56 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCC   56 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            34457999999999999999999999999987

>PRK08244 hypothetical protein; Provisional

Probab=98.26  E-value=1.1e-06  Score=64.55  Aligned_cols=28  Identities=32%  Similarity=0.468  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+||||||+|+++|..|+++|++|+|
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~v   30 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCV   30 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            6899999999999999999999999987

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.26  E-value=1.1e-06  Score=61.77  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~l   31 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLG   31 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999987

>PRK07538 hypothetical protein; Provisional

Probab=98.25  E-value=1.1e-06  Score=63.12  Aligned_cols=27  Identities=33%  Similarity=0.442  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++|+++|+.|+++|++|+|
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v   28 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVV   28 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            699999999999999999999999987

>PRK06185 hypothetical protein; Provisional

Probab=98.25  E-value=1.3e-06  Score=62.35  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|++.|++|+|
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~l   34 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTV   34 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47899999999999999999999999987

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.25  E-value=1.3e-06  Score=64.24  Aligned_cols=28  Identities=32%  Similarity=0.451  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++||++|..|+++|++|+|
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~v   29 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTL   29 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            5799999999999999999999999987

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.24  E-value=1.3e-06  Score=62.62  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||.+|+++|++|++.|++|+|
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~v   29 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTV   29 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            5899999999999999999999999987

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.24  E-value=1.1e-06  Score=62.47  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .+|+||||||+|+++|..|++.|++|+|.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~   30 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIF   30 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEe
Confidence            47999999999999999999999999873

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.24  E-value=1.4e-06  Score=63.10  Aligned_cols=28  Identities=46%  Similarity=0.529  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc----CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE----AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~----g~~v~v   80 (81)
                      ++|+|||||+|||++|++|+++    |++|+|
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~v   34 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTL   34 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEE
Confidence            5899999999999999999999    999987

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06116 glutathione reductase; Validated

Probab=98.23  E-value=1.5e-06  Score=63.24  Aligned_cols=29  Identities=14%  Similarity=0.362  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++||||||+|+++|..|+++|++|+|
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~l   32 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVAL   32 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            47899999999999999999999999987

>PRK05868 hypothetical protein; Validated

Probab=98.23  E-value=1.5e-06  Score=62.14  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|+++|++|+|
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~v   29 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTM   29 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            4799999999999999999999999987

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.7e-06  Score=63.18  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++||||||||+++|..|+++|++|.|
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~l   32 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAI   32 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            458999999999999999999999999987

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.22  E-value=1.5e-06  Score=63.11  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||+++|..|++.|++|+|
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~l   31 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVAL   31 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            47899999999999999999999999987

>PLN02612 phytoene desaturase

Probab=98.22  E-value=3.4e-06  Score=63.64  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=29.6

Q ss_pred             CccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+...++|+|||+|++|+++|++|+++|++|+|
T Consensus        89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~  121 (567)
T PLN02612         89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPIL  121 (567)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            345568999999999999999999999999886

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.22  E-value=1.5e-06  Score=63.60  Aligned_cols=30  Identities=17%  Similarity=0.413  Sum_probs=27.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .++|+|||+||+|+++|..|+++|++|+|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li   31 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLV   31 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEe
Confidence            479999999999999999999999999873

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.21  E-value=1.7e-06  Score=62.90  Aligned_cols=29  Identities=24%  Similarity=0.255  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||+|+++|..|+++|++|+|
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~l   31 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVAL   31 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEE
Confidence            37999999999999999999999999887

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=1.4e-06  Score=65.02  Aligned_cols=28  Identities=36%  Similarity=0.477  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +||+|+|||.|||+||++|+.+||+|+|
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~   28 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTL   28 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEE
Confidence            4799999999999999999999999987

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.20  E-value=1.8e-06  Score=62.99  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+++|..++++|++|+|
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~l   30 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAI   30 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47899999999999999999999999987

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.20  E-value=1.7e-06  Score=62.86  Aligned_cols=27  Identities=37%  Similarity=0.614  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|+||+++|++|.++|++|+|
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~v   27 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIV   27 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            589999999999999999999999987

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.20  E-value=1.8e-06  Score=60.78  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||.+|+++|++|+++|++|+|
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~v   28 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTV   28 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            3799999999999999999999999987

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.20  E-value=1.4e-06  Score=64.09  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=25.0

Q ss_pred             EEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|||||.+||+||..|+++|++|+|
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~V   26 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTV   26 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            68999999999999999999999987

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.18  E-value=2e-06  Score=63.54  Aligned_cols=28  Identities=36%  Similarity=0.455  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||||++|+.+|+.|+++|++|+|
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~L   30 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVEL   30 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            5899999999999999999999999987

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.18  E-value=1.9e-06  Score=61.13  Aligned_cols=28  Identities=29%  Similarity=0.533  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      +|+|||||+||+++|+.|++.|++|+|.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~li   28 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLI   28 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            5899999999999999999999999873

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.18  E-value=2.5e-06  Score=64.00  Aligned_cols=31  Identities=35%  Similarity=0.385  Sum_probs=26.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHh-HcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLN-KEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~-~~g~~v~v   80 (81)
                      ...++|+||||||||+.+|.+|+ +.|++|+|
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~Vtl   68 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDI   68 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEE
Confidence            35679999999999999999765 67999887

>PRK06834 hypothetical protein; Provisional

Probab=98.17  E-value=2.4e-06  Score=63.38  Aligned_cols=29  Identities=34%  Similarity=0.438  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+||+|+++|..|+++|++|+|
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~v   31 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAI   31 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            47899999999999999999999999987

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.17  E-value=1.8e-06  Score=61.39  Aligned_cols=28  Identities=32%  Similarity=0.349  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      ++|+||||||+|+++|..|++.|  ++|+|
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~l   31 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTV   31 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEE
Confidence            57999999999999999999996  88876

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.17  E-value=2.4e-06  Score=62.65  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++||||||+|+++|..|+++|++|.|
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~l   32 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTAL   32 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            358999999999999999999999999986

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.16  E-value=2.9e-06  Score=63.25  Aligned_cols=30  Identities=30%  Similarity=0.539  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+||+|+++|..|++.|++|+|
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~v   51 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVL   51 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            457999999999999999999999999987

>PLN02985 squalene monooxygenase

Probab=98.16  E-value=3e-06  Score=63.37  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....++|+|||||++|+++|..|+++|++|+|
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~v   71 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHV   71 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            34567999999999999999999999999987

>PLN02697 lycopene epsilon cyclase

Probab=98.15  E-value=3.6e-06  Score=63.41  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+||||+++|..|+++|++|.+
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~L  136 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGL  136 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            357999999999999999999999999986

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.15  E-value=2.8e-06  Score=62.44  Aligned_cols=28  Identities=29%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||+||+|+++|..++++|++|+|
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~l   31 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVAC   31 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            7899999999999999999999999987

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.14  E-value=2.7e-06  Score=61.91  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+||||||+|+++|..|+++|++|.|
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~l   29 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVAL   29 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            6899999999999999999999999976

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.14  E-value=2.7e-06  Score=61.97  Aligned_cols=29  Identities=34%  Similarity=0.523  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||+|+++|.+|++.|++|++
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~l   33 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAV   33 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            47899999999999999999999999986

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.13  E-value=3.2e-06  Score=64.49  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||.+|+++|++|+++|++|+|
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~V  288 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTL  288 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEE
Confidence            35899999999999999999999999987

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.13  E-value=2.8e-06  Score=62.21  Aligned_cols=30  Identities=37%  Similarity=0.467  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .++|+|||+|||||.+|..+++.|++|+|.
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~li   32 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLI   32 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEE
Confidence            468999999999999999999999999873

>KOG1399|consensus

Probab=98.13  E-value=2.8e-06  Score=62.94  Aligned_cols=29  Identities=41%  Similarity=0.765  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+|||++|..|.+.|+++++
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~v   34 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVV   34 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceE
Confidence            57999999999999999999999999987

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.13  E-value=2.4e-06  Score=62.11  Aligned_cols=28  Identities=39%  Similarity=0.552  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhH----cCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNK----EAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~----~g~~v~v   80 (81)
                      ++|+||||||+|+++|+.|++    +|++|+|
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~v   32 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLL   32 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEE
Confidence            479999999999999999999    8999987

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07190 hypothetical protein; Provisional

Probab=98.12  E-value=3.5e-06  Score=62.55  Aligned_cols=29  Identities=31%  Similarity=0.329  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+||||||+|+++|..|+++|.+|.|
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~l   33 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVI   33 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            36899999999999999999999999886

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.12  E-value=3.3e-06  Score=65.20  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+..+|+|||||++|+++|..|+++|++|+|
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V  109 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLV  109 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            3457999999999999999999999999987

>PRK06370 mercuric reductase; Validated

Probab=98.12  E-value=3.2e-06  Score=61.85  Aligned_cols=29  Identities=14%  Similarity=0.164  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+++|..|++.|++|+|
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~l   33 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVAL   33 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            47999999999999999999999999986

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.11  E-value=3.2e-06  Score=60.41  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=25.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||.+|+++|++|+++|++|+|
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~v   28 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTV   28 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            699999999999999999999999987

>PRK14694 putative mercuric reductase; Provisional

Probab=98.11  E-value=4.1e-06  Score=61.49  Aligned_cols=31  Identities=23%  Similarity=0.392  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++++||||||+|+++|..|++.|++|.|
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~l   34 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTL   34 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            3468999999999999999999999999886

>TIGR02730 carot_isom carotene isomerase

Probab=98.11  E-value=3.5e-06  Score=62.10  Aligned_cols=28  Identities=32%  Similarity=0.469  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||.+|+++|.+|+++|++|+|
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~v   28 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLV   28 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEE
Confidence            3699999999999999999999999987

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.10  E-value=3.6e-06  Score=60.50  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=25.2

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +|+|||||++|+++|..|+++| ++|+|
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v   29 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQL   29 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEE
Confidence            7999999999999999999998 48887

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK11445 putative oxidoreductase; Provisional

Probab=98.10  E-value=3.3e-06  Score=59.80  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=25.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+||||+++|..|+++ ++|+|
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~l   28 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIA   28 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEE
Confidence            5899999999999999999999 99886

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.10  E-value=3.4e-06  Score=61.39  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=24.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC------CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA------GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g------~~v~v   80 (81)
                      ++|+|||||+|||+||++|++.|      ++|+|
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~v   35 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLIL   35 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEE
Confidence            47999999999999999999863      77876

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=4.1e-06  Score=61.39  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+++|..|+++|++|+|
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~l   32 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAV   32 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            37999999999999999999999999986

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.09  E-value=4.4e-06  Score=62.23  Aligned_cols=31  Identities=35%  Similarity=0.509  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+||+|+++|..|+++|++|+|
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v   38 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLV   38 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            3457999999999999999999999999987

>PTZ00367 squalene epoxidase; Provisional

Probab=98.09  E-value=7.8e-06  Score=62.00  Aligned_cols=32  Identities=28%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      +..++|+|||||++|+++|..|+++|++|+|.
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~Vl   62 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLML   62 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence            34679999999999999999999999999873

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.08  E-value=4.1e-06  Score=59.89  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|+|||||.+|+++|++|+++  |++|+|
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~l   32 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAV   32 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEE
Confidence            5899999999999999999999  999987

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.07  E-value=6.4e-06  Score=58.35  Aligned_cols=31  Identities=48%  Similarity=0.614  Sum_probs=28.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|++|+++|.+|+++|++|++
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~l   46 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHV   46 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            4567999999999999999999999999886

>TIGR02053 MerA mercuric reductase

Probab=98.07  E-value=4.7e-06  Score=60.88  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++||||||+|+++|..|+++|++|+|
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~l   28 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAM   28 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999986

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.06  E-value=6.4e-06  Score=58.95  Aligned_cols=33  Identities=33%  Similarity=0.372  Sum_probs=28.2

Q ss_pred             CccCCCcEEEECCCHHHHHHHHHHhHc-CC-Ceee
Q psy11001         48 TLRTGKKVAIVGSGPSGLGAAHQLNKE-AG-TELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~G~aG~~~A~~L~~~-g~-~v~v   80 (81)
                      .....++|+|||||.+|+++|++|+++ |+ +|+|
T Consensus        26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~v   60 (407)
T TIGR01373        26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAV   60 (407)
T ss_pred             CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEE
Confidence            344568999999999999999999995 95 7876

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>KOG2614|consensus

Probab=98.06  E-value=5.2e-06  Score=60.95  Aligned_cols=29  Identities=34%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||.+|+++|.+|.|+|++|+|
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~V   30 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVV   30 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            36899999999999999999999999987

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.05  E-value=5.9e-06  Score=65.81  Aligned_cols=30  Identities=30%  Similarity=0.535  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||||||+||..|++.|++|+|
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~l  191 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVIL  191 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            357999999999999999999999999987

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.04  E-value=5.8e-06  Score=60.24  Aligned_cols=28  Identities=29%  Similarity=0.459  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++||||||+|+++|..|++.|++|.|
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~l   31 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVAL   31 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            7899999999999999999999999876

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.04  E-value=5.6e-06  Score=61.19  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++|+.+|+.|+++|++|+|
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~L   28 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVIL   28 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            699999999999999999999999987

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.03  E-value=5.9e-06  Score=59.20  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=23.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|.||+.||+.++++|.+|+|
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~l   27 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLL   27 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEE
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEE
Confidence            589999999999999999999999987

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.03  E-value=5.8e-06  Score=60.44  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||.||+.||+.++++|++|.+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~L   27 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLL   27 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            589999999999999999999999986

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.03  E-value=5.6e-06  Score=60.39  Aligned_cols=27  Identities=33%  Similarity=0.634  Sum_probs=22.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||+||++||+.+++.|.+|+|
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlL   27 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLL   27 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEE
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEE
Confidence            589999999999999999999999987

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.02  E-value=6.2e-06  Score=63.21  Aligned_cols=29  Identities=28%  Similarity=0.396  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+||+.||+.+++.|.+|.+
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~L   32 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLL   32 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEE
Confidence            47999999999999999999999999986

>PLN02529 lysine-specific histone demethylase 1

Probab=98.02  E-value=8.4e-06  Score=63.57  Aligned_cols=31  Identities=39%  Similarity=0.405  Sum_probs=28.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|++|+++|..|+++|++|+|
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v  188 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVV  188 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEE
Confidence            4567999999999999999999999999987

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.02  E-value=5.6e-06  Score=62.37  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=28.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-.++++|||||+||++||..|++.|++|++
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~L  152 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGFKVYL  152 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCCeEEE
Confidence            3468999999999999999999999999987

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.02  E-value=9.8e-06  Score=61.72  Aligned_cols=32  Identities=34%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHc----CCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKE----AGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~----g~~v~v   80 (81)
                      ....++++|||||.|||+||++|.+.    |++|+|
T Consensus        19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtI   54 (576)
T PRK13977         19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITI   54 (576)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEE
Confidence            34458999999999999999999996    678886

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.01  E-value=6.7e-06  Score=60.95  Aligned_cols=28  Identities=39%  Similarity=0.551  Sum_probs=25.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .+|+|||||+|||+||++|.+++  .+++|
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~l   30 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTL   30 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEE
Confidence            37999999999999999999999  77765

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.00  E-value=6.9e-06  Score=61.06  Aligned_cols=29  Identities=17%  Similarity=0.370  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+++|..|+++|++|.|
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~l   33 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVAL   33 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            47999999999999999999999999987

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.00  E-value=7.8e-06  Score=60.58  Aligned_cols=31  Identities=39%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+..+|+|+|+|.|||++|++|.+.||+|+|
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~i   35 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQI   35 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEE
Confidence            4567999999999999999999999999987

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.00  E-value=1e-05  Score=46.23  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++|||||+.|+..|..|++.|.+|++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtl   27 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTL   27 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEE
Confidence            689999999999999999999999886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02661 Putative thiazole synthesis

Probab=98.00  E-value=7e-06  Score=59.40  Aligned_cols=30  Identities=37%  Similarity=0.532  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      ...+|+|||+|++|+.+|++|+++ |++|+|
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~v  121 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAI  121 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEE
Confidence            457999999999999999999986 899887

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.99  E-value=1e-05  Score=59.24  Aligned_cols=30  Identities=37%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ...+|+|||||.+|+++|++|+++  |.+|+|
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~v   54 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLV   54 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence            346999999999999999999998  899987

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.99  E-value=9e-06  Score=59.89  Aligned_cols=29  Identities=24%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+.+|..|++.|++|+|
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~l   32 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVC   32 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            47999999999999999999999999986

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.99  E-value=9e-06  Score=60.31  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~L   34 (502)
T PRK13369          6 TYDLFVIGGGINGAGIARDAAGRGLKVLL   34 (502)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47899999999999999999999999987

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.98  E-value=8.7e-06  Score=59.47  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|+||+++|+.++++|.+|+|
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~v   32 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGASVLL   32 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999987

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.98  E-value=1.4e-05  Score=61.23  Aligned_cols=30  Identities=27%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||++||+.+++.|.+|+|
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~Vil   63 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKV   63 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence            356899999999999999999999999987

>PRK13748 putative mercuric reductase; Provisional

Probab=97.98  E-value=9.4e-06  Score=60.52  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+++|..|++.|++|.|
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~l  126 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTL  126 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            58999999999999999999999999976

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.98  E-value=8.6e-06  Score=62.29  Aligned_cols=29  Identities=45%  Similarity=0.486  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      ..+|+||||||+||++|..|++. |++|.|
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~I   61 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRI   61 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEE
Confidence            57999999999999999999995 999887

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.96  E-value=9.6e-06  Score=59.94  Aligned_cols=27  Identities=44%  Similarity=0.527  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|++|+++|++|+++|++|+|
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v   27 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDI   27 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            589999999999999999999999987

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.96  E-value=1e-05  Score=60.72  Aligned_cols=29  Identities=24%  Similarity=0.404  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||..|+++|++|+++|++|+|
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~L   34 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCIL   34 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            47899999999999999999999999987

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.95  E-value=1.3e-05  Score=63.02  Aligned_cols=31  Identities=32%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||++|+++|+.|+++|++|+|
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v  266 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVV  266 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            3457999999999999999999999999987

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.95  E-value=1.1e-05  Score=60.03  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||.+|+++|++|+++|++|+|
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~L   34 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLSVLL   34 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            47899999999999999999999999987

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.93  E-value=1.1e-05  Score=58.51  Aligned_cols=28  Identities=32%  Similarity=0.353  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|||||+||+++|..|++.|.+|+|
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~v   29 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLV   29 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            4799999999999999999999999887

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.91  E-value=1.3e-05  Score=58.96  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||||+++|..+++.|.+|+|
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~l   32 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVAC   32 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            47899999999999999999999999876

>PRK06996 hypothetical protein; Provisional

Probab=97.91  E-value=1.2e-05  Score=57.64  Aligned_cols=31  Identities=32%  Similarity=0.513  Sum_probs=26.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCC----Ceee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAG----TELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~----~v~v   80 (81)
                      ...++|+||||||+|+++|+.|++.|+    +|+|
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l   43 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIAL   43 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEE
Confidence            345799999999999999999999973    5765

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.91  E-value=1.3e-05  Score=59.01  Aligned_cols=28  Identities=46%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|.||+++|+.+++.|.+|+|
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~l   29 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTI   29 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEE
Confidence            5799999999999999999999999987

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.90  E-value=1.1e-05  Score=57.92  Aligned_cols=27  Identities=41%  Similarity=0.694  Sum_probs=25.0

Q ss_pred             cEEEECCCHHHHHHHHHH--hHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQL--NKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L--~~~g~~v~v   80 (81)
                      +|+|||+||||+++|+.|  ++.|++|.|
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vll   29 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLL   29 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEE
Confidence            589999999999999999  888998876

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.90  E-value=1.1e-05  Score=60.72  Aligned_cols=28  Identities=46%  Similarity=0.675  Sum_probs=23.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||+|||++|..|.+.|+++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~   29 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTC   29 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeE
Confidence            7899999999999999999999999876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.87  E-value=1.7e-05  Score=57.55  Aligned_cols=27  Identities=37%  Similarity=0.548  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +|+|||+|.||+++|+.++++| .+|+|
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~v   28 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVL   28 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEE
Confidence            5899999999999999999999 99887

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07121 hypothetical protein; Validated

Probab=97.87  E-value=2.7e-05  Score=57.50  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||+++|+.++++|.+|+|
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~Vil   48 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLV   48 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            357899999999999999999999999987

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.86  E-value=1.8e-05  Score=60.55  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ..++|+|||||..|.++|++|+++|++|+|.
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~Lv  100 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLV  100 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            3479999999999999999999999999873

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.86  E-value=1.9e-05  Score=56.73  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .++|+|||+|+||+++|..|+++|++
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~   28 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFT   28 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCC
Confidence            36899999999999999999999984

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.85  E-value=2.9e-05  Score=57.76  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||+++|+.+++.|.+|+|
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~Viv   89 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVI   89 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            457999999999999999999999999987

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.84  E-value=1.7e-05  Score=61.72  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      +|+||||||||+++|+.|+++  |++|+|
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~v   30 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTV   30 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence            699999999999999999998  899987

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.84  E-value=1.9e-05  Score=55.98  Aligned_cols=28  Identities=36%  Similarity=0.487  Sum_probs=26.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .|+|||+|++|+++|+.|+..|++|+|.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~   30 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVF   30 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEE
Confidence            6999999999999999999999999873

>PLN02507 glutathione reductase

Probab=97.83  E-value=2.4e-05  Score=58.18  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++++|||+||+|+.+|..+++.|.+|.|
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~l   53 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGI   53 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            3457999999999999999999999999986

>PLN02568 polyamine oxidase

Probab=97.82  E-value=2.4e-05  Score=58.99  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-----CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-----GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-----~~v~v   80 (81)
                      .++|+|||+|+|||++|..|++.|     ++|+|
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v   38 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTV   38 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEE
Confidence            368999999999999999999988     78776

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.82  E-value=2.7e-05  Score=58.71  Aligned_cols=29  Identities=31%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|++|+++|+.++++|++|+|
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~l   37 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVV   37 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            56899999999999999999999999987

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.82  E-value=2.4e-05  Score=57.31  Aligned_cols=27  Identities=26%  Similarity=0.494  Sum_probs=25.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++|||+||+|+++|..|++.|.+|+|
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~l   28 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTL   28 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            699999999999999999999999987

>PLN02676 polyamine oxidase

Probab=97.81  E-value=3e-05  Score=57.67  Aligned_cols=30  Identities=40%  Similarity=0.520  Sum_probs=26.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++|+|||+|++||++|..|+++|+ +|+|
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~v   55 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILI   55 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            45789999999999999999999998 4765

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=2.6e-05  Score=59.18  Aligned_cols=28  Identities=29%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|.||++||+.+++.|.+|+|
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~l   31 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDL   31 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEE
Confidence            4899999999999999999999999987

>PTZ00058 glutathione reductase; Provisional

Probab=97.80  E-value=2.9e-05  Score=58.89  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+.+|..+++.|.+|.|
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~Val   76 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVAL   76 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            457999999999999999999999999976

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.79  E-value=2.5e-05  Score=56.17  Aligned_cols=27  Identities=26%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      +|+|||||+||+++|+.|++.  |++|.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~l   29 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRV   29 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEE
Confidence            589999999999999999997  999876

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.79  E-value=3.2e-05  Score=57.01  Aligned_cols=30  Identities=43%  Similarity=0.555  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      +..+|+|||||++|+++|+.|.+.|.. ++|
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i   37 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVI   37 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            457999999999999999999999988 654

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.79  E-value=2.6e-05  Score=58.57  Aligned_cols=27  Identities=37%  Similarity=0.479  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|.||++||+.++++|.+|+|
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~l   27 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAV   27 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            589999999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02546 glutathione reductase

Probab=97.78  E-value=3.7e-05  Score=58.21  Aligned_cols=30  Identities=13%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+||+|+.+|..++++|.+|.|
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~l  107 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAV  107 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            357999999999999999999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=97.73  E-value=4.7e-05  Score=56.17  Aligned_cols=30  Identities=30%  Similarity=0.388  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+++|..|+++|.+|++
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~   44 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTI   44 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            457999999999999999999999999876

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.72  E-value=4.1e-05  Score=58.51  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~l   36 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAV   36 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            46899999999999999999999999987

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.71  E-value=4.5e-05  Score=56.88  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+| +|+++|+++++.|.+|+|
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~v   34 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVAL   34 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEE
Confidence            4689999999 999999999999999987

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.71  E-value=5e-05  Score=57.68  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~v   40 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAV   40 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            346899999999999999999999999987

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.71  E-value=4.8e-05  Score=58.36  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~Vil   78 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTAC   78 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEE
Confidence            46899999999999999999999999987

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.70  E-value=6.5e-05  Score=56.45  Aligned_cols=30  Identities=33%  Similarity=0.488  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~Vil   44 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLV   44 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEE
Confidence            347899999999999999999999999987

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.70  E-value=5.1e-05  Score=56.33  Aligned_cols=29  Identities=21%  Similarity=0.454  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|+.+|..++++|.+|.+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~l   30 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVML   30 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999976

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.70  E-value=4.7e-05  Score=57.14  Aligned_cols=29  Identities=34%  Similarity=0.503  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||++||+.+++.|.+|+|
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~Viv   32 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLL   32 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999999999987

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.69  E-value=5.9e-05  Score=57.37  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~l   40 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTAC   40 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence            346899999999999999999999999887

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.69  E-value=5.6e-05  Score=57.43  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~l   35 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCAL   35 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence            46899999999999999999999999987

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.67  E-value=4e-05  Score=52.57  Aligned_cols=28  Identities=32%  Similarity=0.427  Sum_probs=23.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ++++|||||++|..+|..|++.| .+|+|
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~Vlv   29 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLV   29 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEE
Confidence            47999999999999999999998 67876

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.66  E-value=6.5e-05  Score=56.77  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~l   33 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAV   33 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>PRK12839 hypothetical protein; Provisional

Probab=97.66  E-value=8.2e-05  Score=56.40  Aligned_cols=31  Identities=32%  Similarity=0.414  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|+|||+|.+|+++|+.++++|.+|+|
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~   36 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLV   36 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            4467999999999999999999999999886

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.65  E-value=6.6e-05  Score=55.25  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|+.|+++|++|+|
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~v   30 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVAL   30 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            36899999999999999999999999876

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.65  E-value=6.2e-05  Score=55.39  Aligned_cols=28  Identities=25%  Similarity=0.477  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||+|++|+.+|..++++|.+|++
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~   29 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTV   29 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            5799999999999999999999999976

>PLN03000 amine oxidase

Probab=97.65  E-value=7.3e-05  Score=59.40  Aligned_cols=31  Identities=39%  Similarity=0.438  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|++|+.+|.+|++.|++|+|
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~V  212 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTV  212 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            3468999999999999999999999999987

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.64  E-value=5.9e-05  Score=57.16  Aligned_cols=28  Identities=29%  Similarity=0.245  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+||+|+.+|..|+++|++|.|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~   28 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAM   28 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999987

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.64  E-value=4.3e-05  Score=55.81  Aligned_cols=30  Identities=37%  Similarity=0.577  Sum_probs=25.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|+|||+|.|||++|+.|+++ ++|++
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTL   35 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTL   35 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcc-cceEE
Confidence            3467999999999999999999887 77775

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.63  E-value=7.4e-05  Score=56.71  Aligned_cols=29  Identities=31%  Similarity=0.389  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+++|+.++++|.+|+|
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~Viv   39 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLV   39 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.63  E-value=6.4e-05  Score=57.43  Aligned_cols=30  Identities=27%  Similarity=0.262  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~l   57 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTAC   57 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence            356899999999999999999999999987

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=5.4e-05  Score=55.56  Aligned_cols=30  Identities=27%  Similarity=0.405  Sum_probs=27.0

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      .+..++|+|||+||||.++|.|.+|+|.+.
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRT  237 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRT  237 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHhhcchh
Confidence            345689999999999999999999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.63  E-value=6.5e-05  Score=57.81  Aligned_cols=29  Identities=17%  Similarity=0.310  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.++++|.+|+|
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~Viv   33 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIV   33 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEE
Confidence            45899999999999999999999999987

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.62  E-value=6.3e-05  Score=55.98  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      +|+|||||.+|+++|++|++.  |.+|+|
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~V   30 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITL   30 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEE
Confidence            699999999999999999997  899887

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.62  E-value=8.4e-05  Score=56.07  Aligned_cols=29  Identities=34%  Similarity=0.396  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.+|+++|+.++++|.+|+|
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~l   34 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLI   34 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.62  E-value=7.5e-05  Score=55.59  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      +.++++|||+||+|..+|..++++ |.+|.|
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~l   32 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAV   32 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence            357999999999999999999997 899976

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.60  E-value=7.3e-05  Score=56.45  Aligned_cols=29  Identities=34%  Similarity=0.379  Sum_probs=26.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA---GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g---~~v~v   80 (81)
                      ..+|+|||+|.||++||+.+++.|   .+|+|
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~l   36 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAV   36 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEE
Confidence            358999999999999999999998   88876

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.59  E-value=7.3e-05  Score=56.98  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.  |.+|+|
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~l   41 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLI   41 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEE
Confidence            36899999999999999999998  999887

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.58  E-value=6.9e-05  Score=57.12  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=24.8

Q ss_pred             EEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|||+|.||+.||+.+++.|.+|+|
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~Vil   26 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKL   26 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEE
Confidence            68999999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.56  E-value=9.5e-05  Score=53.53  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=23.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      +|+|||||++|+++|..|++.+.  +|+|
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtl   30 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITV   30 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEE
Confidence            79999999999999999999864  6665

>KOG1276|consensus

Probab=97.56  E-value=9.2e-05  Score=55.07  Aligned_cols=31  Identities=42%  Similarity=0.464  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+.+|+|+|||.+||++|++|++++-+++|
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i   39 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTI   39 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceE
Confidence            3467999999999999999999999998865

>TIGR00551 nadB L-aspartate oxidase

Probab=97.55  E-value=0.0001  Score=54.53  Aligned_cols=27  Identities=33%  Similarity=0.585  Sum_probs=24.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|.||+.||+.+++.|. |+|
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~l   29 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIV   29 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEE
Confidence            589999999999999999999997 765

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.55  E-value=0.00012  Score=55.16  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|++|+++|+.++++|.+|+|
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~l   35 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVV   35 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            46899999999999999999999999987

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.53  E-value=0.00011  Score=54.95  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=26.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ...+|+|||||+.|+++|++|++.  |.+|+|
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~V   35 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITM   35 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEE
Confidence            346899999999999999999985  778876

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.53  E-value=0.00014  Score=55.08  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=28.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|+|||+|.+|+++|+.++++|++|+|
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~   40 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIV   40 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            3467999999999999999999999999986

>PRK08275 putative oxidoreductase; Provisional

Probab=97.53  E-value=0.0001  Score=55.42  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.  |.+|+|
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~Vil   39 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLL   39 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEE
Confidence            46899999999999999999987  678876

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.52  E-value=0.00011  Score=55.59  Aligned_cols=28  Identities=29%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .+|+|||+|.||++||+.+++.|  .+|+|
T Consensus         4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~v   33 (575)
T PRK05945          4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAV   33 (575)
T ss_pred             ccEEEECccHHHHHHHHHHHHhcCCCcEEE
Confidence            57999999999999999999875  78876

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.52  E-value=0.0001  Score=56.52  Aligned_cols=27  Identities=33%  Similarity=0.461  Sum_probs=24.9

Q ss_pred             cEEEECCCHHHHHHHHHHh----HcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLN----KEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~----~~g~~v~v   80 (81)
                      +|+|||||.||+.||+.++    +.|.+|+|
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~Vil   31 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVL   31 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEE
Confidence            5899999999999999998    77999887

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG0685|consensus

Probab=97.52  E-value=0.00011  Score=54.91  Aligned_cols=29  Identities=31%  Similarity=0.513  Sum_probs=25.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ...+|+|||||.||++||..|.+.|++.+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~   48 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDV   48 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceE
Confidence            34699999999999999999998888744

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.52  E-value=0.00011  Score=47.02  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||.|+|+|..|.+.|..|+++|++|++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l   27 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTL   27 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEE
Confidence            689999999999999999999999986

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.52  E-value=0.00013  Score=56.45  Aligned_cols=29  Identities=28%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|..+|..+++.|.+|.|
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~l  144 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVII  144 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            57999999999999999999999999986

>KOG1800|consensus

Probab=97.50  E-value=0.00013  Score=53.72  Aligned_cols=31  Identities=39%  Similarity=0.542  Sum_probs=25.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ...++|.|||+||||+.+|..|.++  +..|+|
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi   50 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDI   50 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEe
Confidence            4456999999999999999999995  455654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.47  E-value=0.00012  Score=54.11  Aligned_cols=27  Identities=33%  Similarity=0.446  Sum_probs=23.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA---GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g---~~v~v   80 (81)
                      +|+|||||+||..+|..|++.+   ++|+|
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~l   30 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTL   30 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEE
Confidence            6999999999999999999999   77776

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.45  E-value=0.00017  Score=52.65  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|+|||||++|+.+|..|++.  +++|+|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~l   31 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIII   31 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEE
Confidence            4799999999999999999987  466665

>PLN02815 L-aspartate oxidase

Probab=97.44  E-value=0.00017  Score=54.99  Aligned_cols=28  Identities=29%  Similarity=0.307  Sum_probs=25.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++.| +|+|
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~Vvl   56 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAI   56 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEE
Confidence            468999999999999999999999 8776

>KOG2820|consensus

Probab=97.44  E-value=0.00014  Score=52.93  Aligned_cols=31  Identities=35%  Similarity=0.506  Sum_probs=27.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .....++|||+|..|++||++|+++|+++++
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~kill   35 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILL   35 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEE
Confidence            4567899999999999999999999988765

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.43  E-value=0.0002  Score=52.67  Aligned_cols=30  Identities=30%  Similarity=0.441  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|.+|+++|..|+++|++|++
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~   44 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTV   44 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            457899999999999999999999999876

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.43  E-value=0.00017  Score=54.07  Aligned_cols=28  Identities=32%  Similarity=0.397  Sum_probs=25.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+ +.|.+|+|
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~Vil   34 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVI   34 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEE
Confidence            36899999999999999999 99999987

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.42  E-value=0.00017  Score=57.11  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.+|+.+++.|.+|+|
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~l   41 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLL   41 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999999999987

>PRK02106 choline dehydrogenase; Validated

Probab=97.42  E-value=0.0002  Score=53.82  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v~   81 (81)
                      .++++|||||++|+..|..|++ .|++|+|.
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~~Vlvl   35 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLL   35 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCCeEEEe
Confidence            4789999999999999999999 89999873

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.40  E-value=0.00021  Score=55.02  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|+||+.+|..++++|.+|.+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~L   28 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLL   28 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEE
Confidence            4799999999999999999999999876

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.39  E-value=0.00023  Score=53.35  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      ..++|+|||||..|+++|++|++.+  .+|+|
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~V   75 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIAL   75 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEE
Confidence            4579999999999999999999964  57765

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.39  E-value=0.0002  Score=53.50  Aligned_cols=28  Identities=32%  Similarity=0.436  Sum_probs=25.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++ |.+|+|
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~l   30 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVII   30 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEE
Confidence            3589999999999999999976 889886

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.38  E-value=0.00024  Score=54.08  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.|||.||..++.+|.+|.+
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l   34 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVAL   34 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCCcEEE
Confidence            457999999999999999999999999876

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.00015  Score=52.78  Aligned_cols=28  Identities=25%  Similarity=0.483  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..|.|||+|.||..+||+++++|.+|.+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L   31 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVIL   31 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEE
Confidence            5699999999999999999999999986

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.38  E-value=0.00019  Score=53.08  Aligned_cols=29  Identities=17%  Similarity=0.107  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|.+|+.+|..|++.|.+|.+
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLh   32 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGKKVLH   32 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCCEEEE
Confidence            47899999999999999999999999986

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.38  E-value=0.00024  Score=52.49  Aligned_cols=28  Identities=32%  Similarity=0.442  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||+|++|+++|+.|+++|++|.|
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~l   28 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAI   28 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEE
Confidence            4799999999999999999999999876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00022  Score=51.92  Aligned_cols=29  Identities=31%  Similarity=0.421  Sum_probs=26.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||.||+++|+.|+++|.++.|
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~i   30 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAI   30 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEE
Confidence            36899999999999999999999999765

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.37  E-value=0.00021  Score=51.99  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.++|+|||||.||+.+|..|.+.+++|+|
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~Itl   38 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITV   38 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEE
Confidence            3457999999999999999999887888876

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.37  E-value=0.00021  Score=52.16  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||.|++|+++|.+|+++|++|++
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~   28 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVV   28 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence            589999999999999999999999875

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.36  E-value=0.00021  Score=52.31  Aligned_cols=28  Identities=39%  Similarity=0.406  Sum_probs=25.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||++||+.++ .|.+|+|
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~l   31 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILM   31 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEE
Confidence            368999999999999999975 7999887

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.36  E-value=0.00022  Score=53.89  Aligned_cols=28  Identities=36%  Similarity=0.278  Sum_probs=25.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||++||+.++ .|.+|+|
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~l   36 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-SHLRVGL   36 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-cCCCEEE
Confidence            468999999999999999986 5999887

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.36  E-value=0.00028  Score=52.54  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+||+|..+|..+++.|.+|.+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kval   32 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVAL   32 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            358999999999999999999999998544

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.34  E-value=0.00043  Score=52.42  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.+|+++|+.++++|++|+|
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l   44 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLL   44 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999986

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.34  E-value=0.00024  Score=53.96  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=25.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|+|||+|.||+.||+.++++  |.+|+|
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~l   33 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVAL   33 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEE
Confidence            5799999999999999999987  578876

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG2415|consensus

Probab=97.33  E-value=0.00012  Score=54.84  Aligned_cols=27  Identities=41%  Similarity=0.583  Sum_probs=22.8

Q ss_pred             CccCCCcEEEECCCHHHHHHHHHHhHc
Q psy11001         48 TLRTGKKVAIVGSGPSGLGAAHQLNKE   74 (81)
Q Consensus        48 ~~~~~~~v~viG~G~aG~~~A~~L~~~   74 (81)
                      ......+|+|||+|||||+||+.|.|.
T Consensus        72 R~~e~~Dv~IVG~GPAGLsaAIrlKQl   98 (621)
T KOG2415|consen   72 RESEEVDVVIVGAGPAGLSAAIRLKQL   98 (621)
T ss_pred             hhhccccEEEECCCchhHHHHHHHHHH
Confidence            344567999999999999999998764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.33  E-value=0.00025  Score=53.79  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .+|+|||+|.||+.||+.+++.|  .+|+|
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~l   34 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIAL   34 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEE
Confidence            58999999999999999999874  68876

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.33  E-value=0.00031  Score=52.77  Aligned_cols=31  Identities=19%  Similarity=0.139  Sum_probs=27.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      +...+|+|||||.+|+++|++|++.  +.+|+|
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~v   36 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEV   36 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEE
Confidence            3456899999999999999999999  788776

>PLN02976 amine oxidase

Probab=97.32  E-value=0.0003  Score=58.72  Aligned_cols=30  Identities=37%  Similarity=0.657  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+++|+.|++.|++|+|
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~V  721 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTV  721 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEE
Confidence            457899999999999999999999999887

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.31  E-value=0.00035  Score=45.18  Aligned_cols=32  Identities=31%  Similarity=0.411  Sum_probs=26.7

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+++|+|||+|.+++.+|..|++.|.+|++
T Consensus       164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~  195 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTL  195 (203)
T ss_dssp             GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred             hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence            34579999999999999999999999988775

...

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00016  Score=53.28  Aligned_cols=55  Identities=18%  Similarity=0.305  Sum_probs=43.0

Q ss_pred             cchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         23 VTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        23 i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..|..++.|-.+..++..|..   +....+|+|+|||+|.+|...|.+|++.|-+|++
T Consensus       149 P~~~G~~~f~g~~~HS~~~~~---~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~  203 (443)
T COG2072         149 PDFAGLDEFKGRILHSADWPN---PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTL  203 (443)
T ss_pred             CCCCCccCCCceEEchhcCCC---ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEE
Confidence            345556666666666666655   3456789999999999999999999999988875

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.29  E-value=0.00032  Score=49.20  Aligned_cols=30  Identities=37%  Similarity=0.513  Sum_probs=27.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .++++|+|+|+.|+.+|..|+++|++|++.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~  165 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLI  165 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence            479999999999999999999999998873

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.28  E-value=0.00031  Score=50.77  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ++.+|||||.+|+..|..|+++|++|.|.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIv   30 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIV   30 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEE
Confidence            57899999999999999999999999873

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.27  E-value=0.0002  Score=54.05  Aligned_cols=53  Identities=25%  Similarity=0.329  Sum_probs=40.4

Q ss_pred             hhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         25 IKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        25 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.++.|-.+..++..|..   +....+|+|+|||+|.+|...|.+|++...+|++
T Consensus       159 ~~G~e~F~G~i~HS~~yr~---~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~  211 (531)
T PF00743_consen  159 FPGLEKFKGEIIHSKDYRD---PEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYL  211 (531)
T ss_dssp             -CTGGGHCSEEEEGGG--T---GGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEE
T ss_pred             hhhhhcCCeeEEccccCcC---hhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEE
Confidence            5667777665556666544   4556789999999999999999999999888875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.27  E-value=0.00034  Score=53.06  Aligned_cols=28  Identities=29%  Similarity=0.429  Sum_probs=25.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++. .+|+|
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~Vil   32 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAV   32 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEE
Confidence            35899999999999999999976 88876

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.27  E-value=0.00041  Score=56.46  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|.||++||+.+++.|.+|+|
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~Viv  437 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVIL  437 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            347899999999999999999999999987

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.22  E-value=0.00061  Score=51.69  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|+|||+| +|+++|+.+++.|.+|+|
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v   43 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLI   43 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEE
Confidence            446899999999 899999999999999986

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.21  E-value=0.00047  Score=51.79  Aligned_cols=28  Identities=32%  Similarity=0.462  Sum_probs=25.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.+++. .+|+|
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~Vil   35 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAV   35 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEE
Confidence            46899999999999999999886 78876

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.20  E-value=0.00051  Score=49.99  Aligned_cols=30  Identities=43%  Similarity=0.632  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++++|+|+|.+|+.+|..|+++|++|++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~   33 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVIL   33 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            358899999999999999999999999986

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.11  E-value=0.00069  Score=44.44  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=24.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..+++.|++|++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l   27 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTL   27 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEE
Confidence            589999999999999999999999987

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.11  E-value=0.00059  Score=48.66  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ++++|||+|+||+.+|..|++++.+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~   27 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAH   27 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcC
Confidence            5899999999999999999987654

>PRK09897 hypothetical protein; Provisional

Probab=97.10  E-value=0.00059  Score=51.69  Aligned_cols=28  Identities=39%  Similarity=0.597  Sum_probs=23.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      ++|+|||+||+|+++|..|.+.+.  +|+|
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~l   31 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISI   31 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEE
Confidence            589999999999999999998754  4554

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.07  E-value=0.00053  Score=45.28  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+.+|..|+++||+|+-
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g   28 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIG   28 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEE
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEE
Confidence            799999999999999999999999873

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.06  E-value=0.00073  Score=49.72  Aligned_cols=29  Identities=38%  Similarity=0.503  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.+|.+|+..|.+|.|
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~i   33 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLI   33 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEE
Confidence            46899999999999999999999999987

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.01  E-value=0.00052  Score=51.75  Aligned_cols=26  Identities=38%  Similarity=0.442  Sum_probs=24.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|.|||++|+.|++. ++|+|
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~v   34 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTV   34 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEE
Confidence            799999999999999999998 88876

>TIGR01810 betA choline dehydrogenase

Probab=97.01  E-value=0.00062  Score=50.83  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=24.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +++|||||.+|+..|..|++.| ++|+|
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~Vlv   28 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLV   28 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEE
Confidence            4899999999999999999998 68876

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.01  E-value=0.0011  Score=47.36  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtl  169 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTL  169 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            47899999999999999999999999876

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.98  E-value=0.0011  Score=47.58  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  172 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTV  172 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47899999999999999999999999886

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.98  E-value=0.001  Score=50.51  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=28.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+++|||||..|+-+|..++.+|++|.+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~L   40 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVAL   40 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEE
Confidence            568999999999999999999999999987

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.95  E-value=0.0014  Score=40.97  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             EEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|+|+|..|...|++|++.|++|++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l   26 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTL   26 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEE
Confidence            68999999999999999999999876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.95  E-value=0.00082  Score=47.45  Aligned_cols=27  Identities=7%  Similarity=0.148  Sum_probs=22.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      +|+|||||+||+.+|..|+++   +++|+|
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~l   30 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTL   30 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEE
Confidence            589999999999999999754   567765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.95  E-value=0.00081  Score=50.79  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|.+|...|..|+..|++|+|
T Consensus         6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~Vll   35 (542)
T COG2303           6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLV   35 (542)
T ss_pred             CCCCEEEECCCchhHHHHHHhcCCCCeEEE
Confidence            458999999999999999999999999987

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.94  E-value=0.00047  Score=51.13  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             CccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+++|+|||+|.+|+..|.+|++.+.+|++
T Consensus       200 ~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l  232 (461)
T PLN02172        200 DPFKNEVVVVIGNFASGADISRDIAKVAKEVHI  232 (461)
T ss_pred             cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEE
Confidence            345678999999999999999999999998876

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.92  E-value=0.00095  Score=49.93  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=23.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|.||+.||+.++  |.+|+|
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~l   35 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVV   35 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEE
Confidence            468999999999999999987  557776

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.92  E-value=0.0014  Score=48.26  Aligned_cols=29  Identities=31%  Similarity=0.297  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtl  208 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTV  208 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999886

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.88  E-value=0.0013  Score=48.71  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=26.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .++|+|||||..|+++|++|++..  ++|.|
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~l   33 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVAL   33 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEE
Confidence            478999999999999999999999  88876

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.87  E-value=0.0016  Score=47.31  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtl  185 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTV  185 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            46899999999999999999999999886

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.85  E-value=0.0018  Score=46.77  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+.+|.+|++.|.+|++
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  165 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTL  165 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47999999999999999999999999876

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.82  E-value=0.0021  Score=43.06  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|||+|.+|...+..|.+.|.+|+|
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtV   37 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRV   37 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            3468999999999999999999999999887

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.80  E-value=0.0022  Score=46.78  Aligned_cols=29  Identities=17%  Similarity=0.291  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  198 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTV  198 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            47999999999999999999999999876

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.80  E-value=0.0011  Score=50.74  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||-||..||+..+|.|.++.+
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlL   32 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLL   32 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEE
Confidence            38999999999999999999999999875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.75  E-value=0.0022  Score=46.83  Aligned_cols=29  Identities=21%  Similarity=0.283  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl  200 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTI  200 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47899999999999999999999999876

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.75  E-value=0.0011  Score=39.68  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|+|||+|..|..-+..|.+.|.+|+|
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~v   35 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTV   35 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            568999999999999999999999999887

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.74  E-value=0.0028  Score=40.83  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.1

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-.+++|+|||||..|..-+..|.+.|++|+|
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~V   41 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTV   41 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            34678999999999999999999999999987

>TIGR02053 MerA mercuric reductase

Probab=96.73  E-value=0.0023  Score=46.84  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtl  194 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTI  194 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            47899999999999999999999999886

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.71  E-value=0.0038  Score=38.98  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      -++++++|+|+|-+|..++..|...|.+ ++|
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i   41 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITI   41 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence            3568999999999999999999999988 554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.71  E-value=0.0028  Score=46.71  Aligned_cols=30  Identities=17%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtl  202 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTV  202 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            357999999999999999999999999976

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.70  E-value=0.0027  Score=46.30  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtl  197 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTV  197 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            347999999999999999999999999886

>PRK12831 putative oxidoreductase; Provisional

Probab=96.68  E-value=0.0027  Score=47.02  Aligned_cols=31  Identities=35%  Similarity=0.488  Sum_probs=28.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|..|+.+|..|.+.|.+|++
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtl  309 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHI  309 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            3568999999999999999999999999876

>PRK06370 mercuric reductase; Validated

Probab=96.67  E-value=0.0027  Score=46.50  Aligned_cols=29  Identities=21%  Similarity=0.344  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl  199 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTV  199 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999886

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.67  E-value=0.0028  Score=46.60  Aligned_cols=30  Identities=20%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|||+|..|+.+|..|++.|.+|++
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtl  300 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLGAEVHC  300 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            467999999999999999999999999876

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG0404|consensus

Probab=96.66  E-value=0.002  Score=45.04  Aligned_cols=29  Identities=31%  Similarity=0.446  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-+|+|||+|||+-.+|++++++.++.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPll   36 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLL   36 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceE
Confidence            35899999999999999999999988765

>KOG1298|consensus

Probab=96.66  E-value=0.0024  Score=47.47  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ...+|+|||+|.+|.+.|+.|+|.|.+|+|.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVI   74 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVI   74 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEE
Confidence            3468999999999999999999999999873

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.65  E-value=0.0029  Score=46.43  Aligned_cols=29  Identities=24%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl  198 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTI  198 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            46899999999999999999999999876

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.65  E-value=0.003  Score=46.40  Aligned_cols=29  Identities=28%  Similarity=0.315  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl  194 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHL  194 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            47999999999999999999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.65  E-value=0.0029  Score=46.14  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtl  203 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTL  203 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            57999999999999999999999999886

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.65  E-value=0.0029  Score=46.22  Aligned_cols=29  Identities=21%  Similarity=0.229  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  176 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTL  176 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999886

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.64  E-value=0.003  Score=46.62  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtl  202 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDV  202 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            47899999999999999999999999987

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.62  E-value=0.0031  Score=46.29  Aligned_cols=29  Identities=28%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|++
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtl  200 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTI  200 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999876

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.60  E-value=0.0032  Score=43.68  Aligned_cols=28  Identities=29%  Similarity=0.250  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|+++|++|++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l   31 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTI   31 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            5799999999999999999999999876

>PRK07846 mycothione reductase; Reviewed

Probab=96.59  E-value=0.0033  Score=46.24  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  194 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTV  194 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999886

>PRK13748 putative mercuric reductase; Provisional

Probab=96.59  E-value=0.0035  Score=46.90  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  298 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTI  298 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47899999999999999999999999886

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.57  E-value=0.0036  Score=43.37  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|+++|++|++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~   29 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTL   29 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEE
Confidence            4799999999999999999999999986

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.57  E-value=0.0044  Score=41.44  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||+|-.|...|..|.+.|.+|+|
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~V   38 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVV   38 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4578999999999999999999999999887

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.0032  Score=45.78  Aligned_cols=29  Identities=34%  Similarity=0.442  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|+|+|.+|+++|..|+++|++|++
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~   33 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTV   33 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEE
Confidence            57899999999999999999999999875

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.57  E-value=0.0033  Score=44.04  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|++|++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v   30 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRL   30 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEE
Confidence            3699999999999999999999999986

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.56  E-value=0.0045  Score=44.27  Aligned_cols=29  Identities=24%  Similarity=0.171  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|.|||+|..|...|..+++.|++|++
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l   35 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVA   35 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            46899999999999999999999999986

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.55  E-value=0.0029  Score=44.18  Aligned_cols=29  Identities=28%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .+|.|||+|..|...|..|++.|++|++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~   34 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVF   34 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEE
Confidence            48999999999999999999999999873

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.54  E-value=0.0038  Score=43.09  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+|..|...|..|++.|++|++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~   28 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTF   28 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEE
Confidence            699999999999999999999999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.53  E-value=0.0043  Score=44.97  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+..|.+|++.|.+|++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl  177 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRI  177 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence            47999999999999999999999999876

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.52  E-value=0.0035  Score=49.21  Aligned_cols=29  Identities=34%  Similarity=0.340  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|+|
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtv  168 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSV  168 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            47899999999999999999999999886

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.0036  Score=46.07  Aligned_cols=29  Identities=34%  Similarity=0.321  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|+|.|.+|+++|..|+++|++|++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~   42 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTA   42 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEE
Confidence            57899999999999999999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=96.51  E-value=0.0039  Score=45.85  Aligned_cols=29  Identities=10%  Similarity=0.260  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtl  206 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTV  206 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999886

>PRK10262 thioredoxin reductase; Provisional

Probab=96.50  E-value=0.0043  Score=43.21  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|..|+..|.+|++.|.+|++
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtl  174 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIASEVHL  174 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            467999999999999999999999998876

>TIGR03452 mycothione_red mycothione reductase

Probab=96.50  E-value=0.0042  Score=45.64  Aligned_cols=29  Identities=24%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl  197 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTI  197 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47999999999999999999999999887

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.49  E-value=0.0045  Score=45.65  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|++
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl  211 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTI  211 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999886

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.49  E-value=0.0044  Score=41.96  Aligned_cols=30  Identities=33%  Similarity=0.436  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+..|.+|++.+.+|++
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~  169 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTL  169 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEE
Confidence            457999999999999999999999988875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.49  E-value=0.0039  Score=46.59  Aligned_cols=30  Identities=37%  Similarity=0.534  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|+.|+.+|..|++.|.+|++
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtl  380 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTV  380 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCcEEEE
Confidence            357999999999999999999999998876

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.48  E-value=0.0047  Score=45.93  Aligned_cols=29  Identities=21%  Similarity=0.098  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  208 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTV  208 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEE
Confidence            36899999999999999999999999987

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07846 mycothione reductase; Reviewed

Probab=96.48  E-value=0.0035  Score=46.09  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=22.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||+||+|..+|..  +.|.+|.+
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~~V~l   27 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADKRIAI   27 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCCeEEE
Confidence            689999999999998875  46999876

>TIGR03452 mycothione_red mycothione reductase

Probab=96.47  E-value=0.0037  Score=45.92  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=22.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+||+|..+|.  +..|.+|.+
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~l   28 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAI   28 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEE
Confidence            379999999999999875  457999876

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.46  E-value=0.0053  Score=43.08  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|..|...|..|++.|++|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~   33 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHF   33 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            35899999999999999999999999876

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.45  E-value=0.0047  Score=42.85  Aligned_cols=28  Identities=36%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|+++|++|++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l   32 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLL   32 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence            5799999999999999999999999886

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.0046  Score=46.05  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|.|.+|++++.+|.++|++|++
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~   40 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTV   40 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEE
Confidence            457899999999999999999999999875

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.44  E-value=0.0055  Score=43.44  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=26.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .++++|||+|+.|+..|.+|++.|.+ |+|
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtv  201 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYL  201 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            57999999999999999999999987 766

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.44  E-value=0.0048  Score=46.01  Aligned_cols=29  Identities=31%  Similarity=0.233  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  210 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTV  210 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            35899999999999999999999999987

>PRK14727 putative mercuric reductase; Provisional

Probab=96.41  E-value=0.0049  Score=45.60  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtl  216 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTI  216 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47899999999999999999999999886

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.41  E-value=0.0054  Score=39.57  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=25.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|+|+|.+|..|+..|...|.+|++
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~   48 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVV   48 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEE
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEe
Confidence            347999999999999999999999999875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.40  E-value=0.005  Score=42.35  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|..|...|..|++.|++|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~   28 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTL   28 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            599999999999999999999999876

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.40  E-value=0.0045  Score=46.74  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|+.|+..|.+|++.|.+|++
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtl  171 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTV  171 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccCCEEEE
Confidence            467999999999999999999999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.39  E-value=0.0048  Score=46.07  Aligned_cols=30  Identities=37%  Similarity=0.546  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|||+|.+|+.+|.+|+..+.+|++
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtl  379 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTV  379 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            467999999999999999999999998876

>PRK06116 glutathione reductase; Validated

Probab=96.39  E-value=0.0052  Score=44.84  Aligned_cols=29  Identities=31%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  195 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHL  195 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999876

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.0054  Score=44.80  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|+|.|.+|+++|.+|+++|++|++
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~   33 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAA   33 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            57899999999999999999999999875

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.37  E-value=0.0053  Score=42.60  Aligned_cols=28  Identities=32%  Similarity=0.457  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|+++|++|++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l   31 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTI   31 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEE
Confidence            5799999999999999999999999876

>PLN02785 Protein HOTHEAD

Probab=96.37  E-value=0.0048  Score=47.19  Aligned_cols=28  Identities=25%  Similarity=0.352  Sum_probs=25.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|.||+..|..|++ +++|+|
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLl   82 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLL   82 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEE
Confidence            5899999999999999999999 688876

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.36  E-value=0.0049  Score=45.69  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++|+|+|.|.+|.++|.+|.++|.+|++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~   36 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQAL   36 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEE
Confidence            57899999999999999999999999876

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.35  E-value=0.0049  Score=49.00  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=24.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc----CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE----AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~----g~~v~v   80 (81)
                      ++|+|||+|+||+.+|..|+++    +++|+|
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itv   35 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITV   35 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEE
Confidence            5899999999999999999865    467776

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.35  E-value=0.0058  Score=44.72  Aligned_cols=29  Identities=17%  Similarity=0.105  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl  194 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTL  194 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            47899999999999999999999999886

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.34  E-value=0.0061  Score=41.34  Aligned_cols=28  Identities=29%  Similarity=0.539  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|||+|..|...|..|.+.|+.|++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~   28 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVL   28 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEE
Confidence            3689999999999999999999999876

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.34  E-value=0.005  Score=45.45  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=25.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .++|+|+|||.+|+.+|..|.++-  .++++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itL   33 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITL   33 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEE
Confidence            578999999999999999999985  65554

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.30  E-value=0.0062  Score=44.89  Aligned_cols=29  Identities=21%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|..|+..|.+|++.|.+|++
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtl  205 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTL  205 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            46899999999999999999999999886

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.29  E-value=0.007  Score=44.88  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|+|.|-+|+++|.+|.++|++|++
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~   43 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVV   43 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence            3457899999999999999999999998875

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.28  E-value=0.0043  Score=46.58  Aligned_cols=23  Identities=48%  Similarity=0.537  Sum_probs=21.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA   75 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g   75 (81)
                      ++|+|||+|++|+.+|.+|.+.-
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~   24 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSP   24 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCC
Confidence            68999999999999999999863

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.27  E-value=0.006  Score=48.52  Aligned_cols=29  Identities=34%  Similarity=0.405  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|+|
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~Vtv  173 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHV  173 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            46899999999999999999999999886

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.24  E-value=0.0068  Score=41.85  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|++|++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~   31 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVM   31 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEE
Confidence            4799999999999999999999999876

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.21  E-value=0.0075  Score=42.36  Aligned_cols=28  Identities=21%  Similarity=0.170  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|+|+|..|...|.+|++.|++|++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~l   30 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRL   30 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEE
Confidence            4799999999999999999999999876

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.20  E-value=0.0057  Score=45.17  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|+|+|..|++.|.-|++.||+|+.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~   28 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVC   28 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEE
Confidence            689999999999999999999999874

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.19  E-value=0.008  Score=44.85  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=28.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .-+++++|||||+.|+..|..+++.|.+|+|.
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTii  202 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVV  202 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            34578999999999999999999999999973

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.17  E-value=0.0081  Score=44.09  Aligned_cols=30  Identities=27%  Similarity=0.534  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++|+|||+|..|+.+|..|++.|. +|++
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtl  302 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTI  302 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            46899999999999999999999998 6765

>KOG2852|consensus

Probab=96.15  E-value=0.0021  Score=46.24  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=23.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEA   75 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g   75 (81)
                      ...++|+|+|||..|..+|+||++++
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~   33 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHP   33 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCC
Confidence            34589999999999999999999998

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.15  E-value=0.0082  Score=42.22  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|++|++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~   30 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTL   30 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence            3699999999999999999999999875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.11  E-value=0.0097  Score=43.33  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtl  186 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTI  186 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999999999886

>KOG1399|consensus

Probab=96.10  E-value=0.005  Score=45.92  Aligned_cols=50  Identities=24%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             HHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         28 IECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        28 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.|-.+..+++.+..   +.....++|+|||+|.+|+..|.++++...+|.+
T Consensus       165 ~~~f~G~~iHS~~Yk~---~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~  214 (448)
T KOG1399|consen  165 IESFKGKIIHSHDYKS---PEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHL  214 (448)
T ss_pred             hhhcCCcceehhhccC---cccccCceEEEECCCccHHHHHHHHHHhccCcce
Confidence            4455555555555543   4456779999999999999999999988877654

>PLN02507 glutathione reductase

Probab=96.09  E-value=0.0091  Score=44.59  Aligned_cols=29  Identities=17%  Similarity=0.169  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl  231 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDL  231 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            47899999999999999999999999987

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.07  E-value=0.0077  Score=44.28  Aligned_cols=31  Identities=26%  Similarity=0.191  Sum_probs=27.4

Q ss_pred             cCCCcEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLG-AAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~-~A~~L~~~g~~v~v   80 (81)
                      .+.++|+|+|.|-+|++ +|.+|.++|++|++
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~   36 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSG   36 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEE
Confidence            34568999999999999 59999999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.06  E-value=0.0067  Score=47.67  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             EEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001         55 VAIVGSGPSGLGAAHQLNKEA---GTELI   80 (81)
Q Consensus        55 v~viG~G~aG~~~A~~L~~~g---~~v~v   80 (81)
                      |+|||+|+||+.+|..|++++   ++|+|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itv   29 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITI   29 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEE
Confidence            689999999999999988754   56766

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.04  E-value=0.012  Score=39.17  Aligned_cols=30  Identities=33%  Similarity=0.501  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++++|+|.|-.|..+|..|.+.|++|++
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv   56 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIV   56 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            467899999999999999999999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG1335|consensus

Probab=96.02  E-value=0.0074  Score=44.95  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+||.|-.||...++.|++...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTac   67 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTAC   67 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEE
Confidence            468999999999999999999999998653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.02  E-value=0.011  Score=46.09  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .+++|+|||+|..|+.+|..|.+.|.+ |++
T Consensus       569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtl  599 (752)
T PRK12778        569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTI  599 (752)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            468999999999999999999999987 776

>PTZ00058 glutathione reductase; Provisional

Probab=95.96  E-value=0.011  Score=44.98  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl  265 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYI  265 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence            57999999999999999999999999986

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.014  Score=40.77  Aligned_cols=28  Identities=25%  Similarity=0.493  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|++.|++|++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~   32 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVL   32 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            5799999999999999999999999875

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.94  E-value=0.011  Score=41.50  Aligned_cols=27  Identities=26%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|+++|++|++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l   28 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNL   28 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            589999999999999999999999875

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.93  E-value=0.027  Score=44.09  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      -++|.|||+|..|...|..+++.|++|+++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~  342 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMK  342 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCCCeEEEE
Confidence            468999999999999999999999999874

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.92  E-value=0.01  Score=43.56  Aligned_cols=29  Identities=38%  Similarity=0.538  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|.|+|.|-+|+++|.+|.++|++|++
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~   37 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIA   37 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999999999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.91  E-value=0.011  Score=44.00  Aligned_cols=29  Identities=28%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|+|.|-+|+++|..|.++|++|++
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~   35 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRV   35 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999999999875

>PRK04148 hypothetical protein; Provisional

Probab=95.91  E-value=0.0073  Score=38.40  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=25.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++||.| +|...|..|++.|++|+.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~Via   44 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIV   44 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEE
Confidence            4689999999 999999999999999874

>KOG2960|consensus

Probab=95.89  E-value=0.0012  Score=45.93  Aligned_cols=54  Identities=24%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             cchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         23 VTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        23 i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      +.+..+.+....+.+.++|..+.  .....-+|+|+|+|.+||++|++.+++.-.+
T Consensus        49 F~FaPIrEStVSRaMTrRYf~Dl--dkyAesDvviVGAGSaGLsAAY~I~~~rPdl  102 (328)
T KOG2960|consen   49 FKFAPIRESTVSRAMTRRYFKDL--DKYAESDVVIVGAGSAGLSAAYVIAKNRPDL  102 (328)
T ss_pred             ccccchhHHHHHHHHHHHHHHHH--HhhhccceEEECCCccccceeeeeeccCCCc
Confidence            44444544444444443332111  1123458999999999999999999776544

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.84  E-value=0.013  Score=45.56  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTL  340 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVS  340 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            46899999999999999999999999887

>PLN02546 glutathione reductase

Probab=95.81  E-value=0.015  Score=44.32  Aligned_cols=30  Identities=30%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl  280 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHV  280 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            357999999999999999999999999886

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.78  E-value=0.014  Score=40.54  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|++.|++|++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~   32 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWL   32 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            5799999999999999999999999876

>KOG2311|consensus

Probab=95.77  E-value=0.01  Score=45.33  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||-||..||...+|.|-+.++
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlL   56 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLL   56 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEE
Confidence            3468999999999999999999999988665

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.76  E-value=0.013  Score=43.00  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|+..|..|+++|++|+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~   31 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIG   31 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEE
Confidence            5799999999999999999999999875

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.75  E-value=0.022  Score=39.02  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|||||..+..-+..|.+.|-+|+|
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtV   53 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYI   53 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            44578999999999999999999999999887

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.75  E-value=0.012  Score=42.74  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+..|..|+++|++|++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~   28 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTG   28 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEE
Confidence            599999999999999999999999875

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=95.75  E-value=0.015  Score=45.57  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ..-++|.|||+|..|...|..+++.|++|+++
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~  342 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMK  342 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhCCCeEEEE
Confidence            34578999999999999999999999999874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.71  E-value=0.016  Score=40.82  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -+|.|||+|..|...|..|+++|++|++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~   32 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRL   32 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999876

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.67  E-value=0.013  Score=43.38  Aligned_cols=29  Identities=21%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|.|.+|.++|.+|.+ |.+|++
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v   33 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIV   33 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEE
Confidence            35789999999999999999994 998876

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.66  E-value=0.019  Score=41.62  Aligned_cols=30  Identities=33%  Similarity=0.365  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+++|+|+|.+|+.+|..|.+.|.+|++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v  195 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTI  195 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEE
Confidence            346799999999999999999999998765

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG3923|consensus

Probab=95.65  E-value=0.0083  Score=43.13  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ..+|+|||+|..|+++|+.+.+.++.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~   28 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHS   28 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhh
Confidence            46899999999999999999987644

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.64  E-value=0.016  Score=43.73  Aligned_cols=29  Identities=28%  Similarity=0.431  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ++|.|||+|..|...|..|++.|++|++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~   34 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLY   34 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence            57999999999999999999999999873

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.016  Score=43.62  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      -++|.|||+|..|...|..|++.|++|+++
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~   36 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLY   36 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            367999999999999999999999999873

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.58  E-value=0.019  Score=40.71  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|+|+|..|...|+.|+++|.+|++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~   28 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTL   28 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEE
Confidence            799999999999999999999977764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.57  E-value=0.019  Score=46.30  Aligned_cols=30  Identities=30%  Similarity=0.549  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|||+|..|+.+|..+.+.|.+|++
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtl  475 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTI  475 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            568999999999999999999999998875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.57  E-value=0.022  Score=38.04  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ...+|+|+|+|-.|...|..|++.|+. +++
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~l   50 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLIL   50 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence            457899999999999999999999995 554

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.56  E-value=0.024  Score=39.76  Aligned_cols=29  Identities=24%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||+|..|...|..|+++|++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~   32 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRV   32 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEE
Confidence            35799999999999999999999999876

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.56  E-value=0.02  Score=40.48  Aligned_cols=28  Identities=25%  Similarity=0.459  Sum_probs=24.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+|.|||+|..|...|+.|+.+|+ +|++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvl   30 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVL   30 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEE
Confidence            479999999999999999999987 6654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.55  E-value=0.023  Score=41.96  Aligned_cols=30  Identities=20%  Similarity=0.472  Sum_probs=25.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCC-Cee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAG-TEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~-~v~   79 (81)
                      ...++|+|||+|..|+.+|..+.+.|. +|+
T Consensus       279 ~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt  309 (471)
T PRK12810        279 AKGKHVVVIGGGDTGMDCVGTAIRQGAKSVT  309 (471)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence            346899999999999999999899886 454

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.51  E-value=0.026  Score=36.88  Aligned_cols=31  Identities=32%  Similarity=0.354  Sum_probs=26.9

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||+|- +|..+|..|.++|.+|++
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v   73 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTV   73 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEE
Confidence            3568999999996 699999999999988765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.49  E-value=0.015  Score=43.45  Aligned_cols=29  Identities=45%  Similarity=0.563  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|+|-|-+|+++|.+|.++|.+|++
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v   35 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTV   35 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEE
Confidence            68999999999999999999999999886

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.48  E-value=0.021  Score=41.59  Aligned_cols=29  Identities=34%  Similarity=0.488  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|+|-|-+|++++..|+++|++|++
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~   34 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRV   34 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999999999875

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.46  E-value=0.026  Score=39.75  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|+|.|.+|..++..|.++|.+|++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v  180 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTV  180 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            468999999999999999999999998775

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.46  E-value=0.023  Score=39.49  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|++.|++|++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~   29 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTL   29 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            699999999999999999999999875

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.45  E-value=0.029  Score=36.63  Aligned_cols=30  Identities=33%  Similarity=0.601  Sum_probs=26.6

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|+ |..|...|..|++.|++|++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l   57 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVL   57 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            3578999997 99999999999999988775

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG4716|consensus

Probab=95.39  E-value=0.022  Score=42.08  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +..++.+|||+|.+||++|-+.++.|.+|.+
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~   47 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVAC   47 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEE
Confidence            4568999999999999999999999999865

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.36  E-value=0.027  Score=39.53  Aligned_cols=30  Identities=20%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|+|.|..|...|..|...|.+|++
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v  179 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFV  179 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEE
Confidence            468999999999999999999999998875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.36  E-value=0.019  Score=41.73  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=25.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.|||-|-+|+++|..|.++|++|++
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~   27 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTV   27 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEE
Confidence            489999999999999999999999875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=95.35  E-value=0.027  Score=44.30  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ..-++|.|||+|..|...|..+++.|++|+++
T Consensus       333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~  364 (737)
T TIGR02441       333 RPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK  364 (737)
T ss_pred             CcccEEEEECCCHhHHHHHHHHHhCCCcEEEe
Confidence            34568999999999999999999999999874

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.33  E-value=0.028  Score=43.35  Aligned_cols=30  Identities=30%  Similarity=0.481  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .+++|+|||+|..|+.+|..|++.|.+ |++
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtl  352 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTI  352 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence            468999999999999999999999974 665

>KOG4254|consensus

Probab=95.31  E-value=0.017  Score=43.67  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +..++++|||+|.-||.+|.+|+|-|.+|.|
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~v   42 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAV   42 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEE
Confidence            4568999999999999999999999999876

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.27  E-value=0.026  Score=42.23  Aligned_cols=28  Identities=25%  Similarity=0.210  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|++|++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v   32 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAV   32 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            4799999999999999999999999986

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.27  E-value=0.023  Score=41.57  Aligned_cols=29  Identities=21%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..-|+|+|-|-+|+++|..|.++|++|++
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~   34 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAV   34 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEE
Confidence            35799999999999999999999999875

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.23  E-value=0.029  Score=42.52  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|++|+.++..+...|.+|++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a  193 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRA  193 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            367999999999999999999999987654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=95.22  E-value=0.03  Score=41.83  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      .++++|||+|+.|+..|..++..   |.+|+|
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl  218 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL  218 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence            47899999999999999877654   888886

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.19  E-value=0.035  Score=38.85  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ..++++|+|+|-+|.++|+.|++.|.+ ++|
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I  156 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTI  156 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            347899999999999999999999984 554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.19  E-value=0.029  Score=41.30  Aligned_cols=28  Identities=32%  Similarity=0.557  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      .+|+|||+|-.|..+|..|+++| ++|++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~i   30 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTI   30 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEE
Confidence            58999999999999999999999 88876

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.17  E-value=0.034  Score=41.15  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|.|+.|+.+|..+...|.+|++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV  230 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIV  230 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            468999999999999999999999998775

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.13  E-value=0.072  Score=38.60  Aligned_cols=30  Identities=30%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|.||| .|..|-+.|..|.++|++|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~  127 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRI  127 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEE
Confidence            457899999 899999999999999999876

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.12  E-value=0.037  Score=38.15  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|+|-+|.+.|..|++.|+++++
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v  145 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADCNVII  145 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence            357899999999999999999999988765

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG2844|consensus

Probab=95.11  E-value=0.026  Score=44.49  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-+++|||+|.+|..+|++|++.|.+..+
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~g~k~av   67 (856)
T KOG2844|consen   39 TADVVVIGGGSLGCSTAYHLAKRGMKGAV   67 (856)
T ss_pred             cccEEEEcCCchhHHHHHHHHHccccceE
Confidence            35899999999999999999999998543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.08  E-value=0.029  Score=40.25  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ...++|+|||||.++...+..|.+.+.
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~  214 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGP  214 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-T
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCC
Confidence            456899999999999999999999976

>PRK13984 putative oxidoreductase; Provisional

Probab=95.04  E-value=0.036  Score=42.11  Aligned_cols=26  Identities=12%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ..++|+|||||..|+.+|..|++.|.
T Consensus       417 ~~k~VvVIGGG~~g~e~A~~l~r~~~  442 (604)
T PRK13984        417 IPRSLVVIGGGNVAMDIARSMARLQK  442 (604)
T ss_pred             CCCcEEEECCchHHHHHHHHHHhccc
Confidence            35799999999999999999998864

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.00  E-value=0.036  Score=40.04  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|+|+|.-|-+.|..|+++|+.|.+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~l   29 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRL   29 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEE
Confidence            4799999999999999999999999976

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.99  E-value=0.033  Score=43.48  Aligned_cols=31  Identities=32%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHh-HcCCCeeeC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLN-KEAGTELIK   81 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~-~~g~~v~v~   81 (81)
                      .-++|.|||+|..|...|..++ +.|++|++.
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~  339 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIK  339 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence            3478999999999999999999 889999873

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=94.98  E-value=0.027  Score=40.24  Aligned_cols=30  Identities=33%  Similarity=0.427  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      -++|.|||+|..|...|..++..||+|+++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~   32 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLK   32 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEE
Confidence            368999999999999999999988999874

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.96  E-value=0.038  Score=39.86  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=24.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC--------CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA--------GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g--------~~v~v   80 (81)
                      +|.|||+|.-|.+.|..|+++|        ++|.+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~l   35 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRM   35 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEE
Confidence            5899999999999999999999        88875

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.93  E-value=0.041  Score=41.69  Aligned_cols=30  Identities=23%  Similarity=0.426  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|+|-+|.++|+.|++.|.++++
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i  407 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGARVVI  407 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            357899999999999999999999997765

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.87  E-value=0.046  Score=33.78  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=23.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ..+|+|+|+|..|...|..|++.|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~   27 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVG   27 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999986

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.046  Score=38.82  Aligned_cols=31  Identities=32%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|||+|-+++..|.+|++.+-+|++
T Consensus       141 ~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtl  171 (305)
T COG0492         141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTL  171 (305)
T ss_pred             ccCCeEEEEcCCHHHHHHHHHHHHhcCeEEE
Confidence            4567999999999999999999999988876

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.84  E-value=0.035  Score=40.39  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||-|.+|+++|..|.++|++|+.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g   31 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIG   31 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEE
Confidence            5799999999999999999999998764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.83  E-value=0.047  Score=34.89  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.+||-|..|...|..|+++||+|.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~   29 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTV   29 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEe
Confidence            4799999999999999999999999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=94.80  E-value=0.036  Score=43.26  Aligned_cols=31  Identities=39%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHh-HcCCCeeeC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLN-KEAGTELIK   81 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~-~~g~~v~v~   81 (81)
                      .-++|.|||+|..|...|..++ +.|++|++.
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~  334 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIK  334 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEE
Confidence            3468999999999999999988 589999873

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.80  E-value=0.059  Score=37.71  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=26.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ..++++|+|+|=+|.++|..|++.|.+ |+|
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I  155 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITI  155 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            357899999999999999999999987 665

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.78  E-value=0.054  Score=38.78  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|.|+ |..|...+.+|.++||+|+.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~   50 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIA   50 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEE
Confidence            45689999998 99999999999999999874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.77  E-value=0.049  Score=36.38  Aligned_cols=27  Identities=37%  Similarity=0.639  Sum_probs=24.6

Q ss_pred             cEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.||| +|..|.+.|..|+++|++|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v   29 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIII   29 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEE
Confidence            589997 799999999999999998875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.75  E-value=0.047  Score=39.79  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=19.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhH
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNK   73 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~   73 (81)
                      ++++|||+|++|+..|.+|+.
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~  194 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELAD  194 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHH
Confidence            589999999999999999986

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.74  E-value=0.058  Score=36.61  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=24.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      +..+++|+|+|-+|..+|..|.+.|.+
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~   50 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAK   50 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcC
Confidence            347899999999999999999999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.74  E-value=0.047  Score=38.49  Aligned_cols=23  Identities=43%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      +|.|||+|..|.+.|+.|+++|+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~   24 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGL   24 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC
Confidence            69999999999999999999994

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.70  E-value=0.051  Score=38.18  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=22.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ++|+|||+|.+|.+.|+.|+.+|.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~   24 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGI   24 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC
Confidence            379999999999999999999995

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.65  E-value=0.06  Score=37.33  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=26.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ..++++|+|+|-+|.+++..|+..| .+|+|
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v  152 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLDLGVAEITI  152 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE
Confidence            4578999999999999999999999 56665

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.64  E-value=0.059  Score=38.72  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ...+|+|||+|-.|...|..|++.|..
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg   49 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIG   49 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999984

>KOG2404|consensus

Probab=94.64  E-value=0.037  Score=40.72  Aligned_cols=27  Identities=26%  Similarity=0.621  Sum_probs=24.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+|||+|.|||+|+..+..+|-.|++
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~l   37 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVIL   37 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEE
Confidence            599999999999999999999887765

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.60  E-value=0.046  Score=37.82  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=25.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|...|..|+++|++|++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~   27 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHV   27 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEE
Confidence            489999999999999999999999875

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.029  Score=41.59  Aligned_cols=26  Identities=42%  Similarity=0.608  Sum_probs=22.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEA   75 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g   75 (81)
                      .++|+|+|||+|-+|..+|..|+--=
T Consensus       352 F~gK~VAVIGGGNSGvEAAIDLAGiv  377 (520)
T COG3634         352 FKGKRVAVIGGGNSGVEAAIDLAGIV  377 (520)
T ss_pred             cCCceEEEECCCcchHHHHHhHHhhh
Confidence            45799999999999999999998543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.58  E-value=0.064  Score=38.23  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=22.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      .||+|||+|..|...|+.|+..|+
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl   30 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNL   30 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            689999999999999999999997

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.58  E-value=0.046  Score=37.81  Aligned_cols=27  Identities=30%  Similarity=0.235  Sum_probs=24.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|.+.|..|+++|++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~   28 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYG   28 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence            689999999999999999999998864

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.55  E-value=0.018  Score=36.11  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ....+|.|||+|-.|-..|..|.++||.|.
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~   37 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVV   37 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            345799999999999999999999999874

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.52  E-value=0.041  Score=43.39  Aligned_cols=28  Identities=25%  Similarity=0.179  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHH-HHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGA-AHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~-A~~L~~~g~~v~v   80 (81)
                      ++++|+|-|-+|+++ |..|.++|++|++
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~   33 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSG   33 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEE
Confidence            579999999999999 9999999999975

>PRK08017 oxidoreductase; Provisional

Probab=94.46  E-value=0.065  Score=35.51  Aligned_cols=28  Identities=36%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|.|+ |..|...|..|+++|++|++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~   31 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLA   31 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            46999998 99999999999999998765

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.44  E-value=0.1  Score=29.99  Aligned_cols=29  Identities=34%  Similarity=0.577  Sum_probs=24.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~   79 (81)
                      ..++++|+|+|-+|..++..|.+.+ .++.
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~   51 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVV   51 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            4578999999999999999999984 4444

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.44  E-value=0.069  Score=39.22  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+.+++|+|+|..|..++..|...|. ++++
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v  211 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITV  211 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCCCeEEE
Confidence            45799999999999999999999997 4544

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.43  E-value=0.056  Score=40.58  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=23.2

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC--CCee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA--GTEL   79 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g--~~v~   79 (81)
                      +|.|||.|..|+.+|..|+++|  ++|+
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~   30 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVV   30 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEE
Confidence            6999999999999999999996  5564

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.43  E-value=0.073  Score=33.72  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             EEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|+|| |..|...+..|.++|++|+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~   27 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTA   27 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEE
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            789997 99999999999999999875

...

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.43  E-value=0.059  Score=39.37  Aligned_cols=26  Identities=23%  Similarity=0.380  Sum_probs=23.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+..|..|+. ||+|+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~Vig   27 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVA   27 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEE
Confidence            58999999999999988885 999875

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.42  E-value=0.071  Score=34.73  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      +|+|||+|-.|...|..|++.|.. +++
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~l   28 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKL   28 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEE
Confidence            589999999999999999999986 443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.38  E-value=0.068  Score=39.27  Aligned_cols=30  Identities=37%  Similarity=0.572  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ...+++|+|+|..|..+|..|...| .+|++
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v  209 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGVGKILI  209 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCCCEEEE
Confidence            4579999999999999999999999 55654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.37  E-value=0.089  Score=34.98  Aligned_cols=27  Identities=30%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ...+|+|||.|-.|...|..|++.|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~   46 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVG   46 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999974

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.35  E-value=0.069  Score=37.25  Aligned_cols=28  Identities=32%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .||.|||+|..|...|..|+++|+ ++.+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L   31 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVL   31 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence            589999999999999999999886 5543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=94.33  E-value=0.084  Score=37.27  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK   73 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~   73 (81)
                      .++++|||+|++|+..|..|++
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~  166 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRR  166 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHH
Confidence            4689999999999999999985

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=94.27  E-value=0.1  Score=32.44  Aligned_cols=30  Identities=33%  Similarity=0.447  Sum_probs=25.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +.++++|+|+|..|...|..|++.| +++++
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v   48 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVI   48 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            3578999999999999999999986 66654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.21  E-value=0.077  Score=39.23  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|+|.|+.|...|..|...|.+|++
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV  223 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIV  223 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEE
Confidence            3578999999999999999999999999876

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>KOG2665|consensus

Probab=94.20  E-value=0.046  Score=40.09  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=26.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ...++.+|||+|..|++.|.+|.-+  +.+|.|
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~v   78 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAV   78 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEe
Confidence            4568999999999999999999888  777655

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.19  E-value=0.077  Score=37.72  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             cCCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+||| ++..|.-.|..|.++|++|++
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv  187 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTI  187 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEE
Confidence            4679999999 999999999999999999986

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.16  E-value=0.096  Score=35.15  Aligned_cols=31  Identities=23%  Similarity=0.199  Sum_probs=27.1

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|+|+ |..|...+..|+++|++|+.
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~   46 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKA   46 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence            34679999995 99999999999999999864

>PLN02572 UDP-sulfoquinovose synthase

Probab=94.16  E-value=0.11  Score=38.30  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             ccCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+.++|+|.|| |..|...+..|+++|++|++
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~   76 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAI   76 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence            345678999997 99999999999999999875

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.12  E-value=0.098  Score=34.84  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|.|+ |..|...|..|+++|++|++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~   39 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVIL   39 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEE
Confidence            3578999997 78999999999999999875

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.12  E-value=0.059  Score=39.44  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=24.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|-|-+|+++|.+|. +|++|++
T Consensus         2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~   27 (401)
T PRK03815          2 KISLFGYGKTTKALAKFLK-KFGGVDI   27 (401)
T ss_pred             eEEEEeECHHHHHHHHHHh-CCCeEEE
Confidence            5899999999999999999 9999875

>PRK07774 short chain dehydrogenase; Provisional

Probab=94.11  E-value=0.1  Score=34.46  Aligned_cols=29  Identities=24%  Similarity=0.418  Sum_probs=26.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|.|+ |..|...|.+|+++|++|++
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~   35 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGASVVV   35 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            468999998 88999999999999999875

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.09  E-value=0.1  Score=37.01  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=24.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      +...||.|||+|..|.+.|+.|+.+|+.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~   31 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIA   31 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCC
Confidence            3457999999999999999999999874

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.09  E-value=0.092  Score=36.65  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ..++++|+|+|=++.++++.|++.|.+ ++|
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I  154 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITV  154 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEE
Confidence            357899999999999999999999975 554

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.09  E-value=0.087  Score=39.17  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|+|.|..|...|..|+..|.+|++
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV  240 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIV  240 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            568999999999999999999999998876

>KOG2495|consensus

Probab=94.08  E-value=0.034  Score=41.77  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK   73 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~   73 (81)
                      --+++||||||.|...|.+|+.
T Consensus       218 lLh~VVVGGGPTGVEFAaEL~D  239 (491)
T KOG2495|consen  218 LLHFVVVGGGPTGVEFAAELAD  239 (491)
T ss_pred             eEEEEEECCCCcceeehHHHHH
Confidence            3489999999999999999875

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.06  E-value=0.1  Score=34.46  Aligned_cols=30  Identities=23%  Similarity=0.264  Sum_probs=26.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|.|+ |..|...|..|+++|++|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~   34 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVG   34 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            3578999997 67899999999999998865

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.05  E-value=0.11  Score=34.24  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=26.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.++|+|+ |..|...|..|+++|++|++
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~   34 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGAKLAL   34 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            568999998 99999999999999998765

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.02  E-value=0.086  Score=36.22  Aligned_cols=29  Identities=24%  Similarity=0.162  Sum_probs=26.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|.|+ |..|...+..|.++|++|++
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~   33 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKA   33 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEE
Confidence            478999995 99999999999999999864

>PLN02214 cinnamoyl-CoA reductase

Probab=94.02  E-value=0.12  Score=36.47  Aligned_cols=30  Identities=23%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|.|+ |..|...+..|.++|++|+.
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~   39 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKG   39 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            4578999998 99999999999999999863

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.01  E-value=0.056  Score=40.98  Aligned_cols=25  Identities=48%  Similarity=0.521  Sum_probs=21.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      .+++=|||+|.|+|++|.+|-|.|.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~   26 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAK   26 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCC
Confidence            3678899999999999999998764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.00  E-value=0.092  Score=40.45  Aligned_cols=30  Identities=13%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+++|+|||+|..|+.+|..+.+.|. +|++
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~  497 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTC  497 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            46899999999999999999999997 4665

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.00  E-value=0.11  Score=34.18  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|||-|.-|.+-|.-|+..|++|+|
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~V   32 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIV   32 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence            368999999999999999999999999886

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.97  E-value=0.11  Score=34.97  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=25.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ...+|+|||+|-.|...|..|++.|..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg   53 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVG   53 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999987

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.96  E-value=0.11  Score=34.67  Aligned_cols=29  Identities=31%  Similarity=0.523  Sum_probs=26.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++++|+|+ |.-|...+.+|+++|++|++
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~   36 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVV   36 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence            578999999 78999999999999999875

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.93  E-value=0.11  Score=35.12  Aligned_cols=31  Identities=35%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|||||-.|..=|..|.+.|-+|+|
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~V   40 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTV   40 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999999999887

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=93.93  E-value=0.11  Score=38.80  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=25.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ...++|+|||+|..|+.+|..+.+.|- .|++
T Consensus       281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~v  312 (485)
T TIGR01317       281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQ  312 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            356899999999999999888888875 4654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.93  E-value=0.092  Score=35.51  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=24.6

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+ |..|...+.+|.++|++|++
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~   28 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVA   28 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence            5899997 99999999999999999874

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.93  E-value=0.093  Score=38.10  Aligned_cols=27  Identities=33%  Similarity=0.510  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+|..|...|..|.++|++|++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~v   28 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTV   28 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999999876

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.88  E-value=0.11  Score=36.64  Aligned_cols=31  Identities=29%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|+|.|- +|...|..|.++|..|++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv  188 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTI  188 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEE
Confidence            4568999999997 999999999999998875

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.87  E-value=0.11  Score=37.38  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=24.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ...+|+|||+|-.|...|..|++.|..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg   49 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVG   49 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCC
Confidence            357899999999999999999999984

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.86  E-value=0.11  Score=37.82  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-------CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-------GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-------~~v~v   80 (81)
                      ...+|.|||+|.-|.+.|..|+++|       ++|.+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~l   46 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRM   46 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEE
Confidence            3458999999999999999999998       67765

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.86  E-value=0.089  Score=40.03  Aligned_cols=29  Identities=28%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|+|+.|+.++..+...|..|++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v  192 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRA  192 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46999999999999999999999988765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.85  E-value=0.1  Score=37.33  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=23.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+||.||.++..+...|...++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi  197 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVI  197 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            799999999999999988888876544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.82  E-value=0.11  Score=35.11  Aligned_cols=29  Identities=41%  Similarity=0.629  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      .+++++|.|.|-.|..+|..|.++|.+++
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV   50 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVL   50 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEE
Confidence            46899999999999999999999998765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=93.77  E-value=0.072  Score=39.07  Aligned_cols=27  Identities=26%  Similarity=0.224  Sum_probs=24.7

Q ss_pred             cEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLG-AAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~-~A~~L~~~g~~v~v   80 (81)
                      ++.+||.|-+|++ +|.+|+++|++|++
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~   28 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSG   28 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEE
Confidence            4789999999998 99999999999875

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=93.76  E-value=0.14  Score=36.58  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|+|+|..|...+..+.+.|++|++
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~   40 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEAQRLGVEVIA   40 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            456899999999999999999999998865

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.75  E-value=0.11  Score=38.62  Aligned_cols=30  Identities=17%  Similarity=0.378  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|||+|..|+.+|..+.+.|. +|+|
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtv  311 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTC  311 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence            46899999999999999999999995 5765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.74  E-value=0.06  Score=39.84  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ...++|+|||+.|...|.+|+..-+
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~  179 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLH  179 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHH
Confidence            3579999999999999999987644

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.73  E-value=0.13  Score=36.59  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=24.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ..||.|||+|..|.+.|+.|+.+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~   29 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLAD   29 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence            359999999999999999999998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.73  E-value=0.12  Score=36.15  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ...+|+|+|.|-.|..+|..|++.|..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg   55 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIG   55 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCC
Confidence            457899999999999999999999954

>PLN02583 cinnamoyl-CoA reductase

Probab=93.72  E-value=0.13  Score=35.47  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=26.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.|+|.|+ |..|...+..|.++|++|++
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~   35 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHA   35 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            468999997 89999999999999999864

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.68  E-value=0.11  Score=32.79  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~   77 (81)
                      ||.|||+ |..|.+.|+.|...++-
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~   26 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLA   26 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCC
Confidence            7999999 99999999999999864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.63  E-value=0.14  Score=35.47  Aligned_cols=28  Identities=25%  Similarity=0.162  Sum_probs=24.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ..+++|+|+|+.|+.++..+..+|.+++
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v  172 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPP  172 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceE
Confidence            5689999999999999998888998854

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.61  E-value=0.14  Score=36.06  Aligned_cols=30  Identities=17%  Similarity=0.070  Sum_probs=26.5

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|.|+ |..|...+.+|+++|++|++
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~   39 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHA   39 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            4568999996 99999999999999999874

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=93.60  E-value=0.11  Score=35.92  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|...|..|++.|++|++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~   30 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVV   30 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEE
Confidence            3699999999999999999999998865

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.59  E-value=0.15  Score=34.37  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ...+|+|+|+|-.|...|..|++.|..-
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~   47 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGK   47 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCE
Confidence            3578999999999999999999999863

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.58  E-value=0.13  Score=36.48  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=23.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      +..+|+|||+|..|.+.|+.|+..|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~   29 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNL   29 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCC
Confidence            35699999999999999999999994

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.58  E-value=0.15  Score=36.32  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=23.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ...+|.|+|+|.-|.+.|..|+++|.
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g~   31 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRGP   31 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            34589999999999999999999994

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.57  E-value=0.15  Score=35.91  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=26.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+...|.+|++
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~  201 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYV  201 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            457899999999999999999999988664

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.57  E-value=0.13  Score=36.14  Aligned_cols=29  Identities=28%  Similarity=0.201  Sum_probs=26.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++|+|.|+ |..|...+..|+++|++|++
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~   33 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYG   33 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCCEEEE
Confidence            478999997 99999999999999999864

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.57  E-value=0.21  Score=37.81  Aligned_cols=29  Identities=17%  Similarity=0.163  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|.|..|...|..|.++|+++++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvv  445 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVV  445 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEE
Confidence            46899999999999999999999999876

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=93.56  E-value=0.12  Score=36.52  Aligned_cols=30  Identities=37%  Similarity=0.462  Sum_probs=24.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ...+|+|||+|..|..++..|..+|. +|++
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v  207 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITI  207 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            46799999999999999999998774 4543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
2vdc_G	456	The 9.5 A Resolution Structure Of Glutamate Synthas		7e-07

>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 456

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 3   GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIV 58
           GR+CP    CEG CV+      AVTI ++E  I D A++QGW+KP  P+   G  V ++
Sbjct: 70  GRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVI 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	5e-45
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	8e-24
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	7e-21
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	6e-08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	7e-07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	1e-06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	3e-06
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	5e-06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	9e-06
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-05
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-05
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	3e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	3e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	4e-05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	4e-05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-05
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	5e-05
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	6e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	6e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	7e-05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	8e-05
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	1e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	2e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-04
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	3e-04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	3e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	3e-04
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	3e-04
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	4e-04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	6e-04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	7e-04
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	8e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	8e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	8e-04
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	8e-04

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score =  148 bits (376), Expect = 5e-45
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 1   FTGRVCPAP--CEGACVLGIN-EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAI 57
             GR+CP    CEG CV+  +   AVTI ++E  I D A++QGW+KP  P+   G  V +
Sbjct: 68  ICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGV 127

Query: 58  VGSGPSGLGAAHQLNK 73
           +G+GP+GL AA +L  
Sbjct: 128 IGAGPAGLAAAEELRA 143

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 91.2 bits (225), Expect = 8e-24
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 11 EGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQ 70
          + A  L +  PA T ++++   +D   + G   P  P     K++ IVG+G +GL A   
Sbjct: 8  QLARELLLVGPAPTNEDLKLRYLDVLIDNGLNPPGPP-----KRILIVGAGIAGLVAGDL 62

Query: 71 LNKEAGTE 78
          L + AG +
Sbjct: 63 LTR-AGHD 69

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 83.7 bits (207), Expect = 7e-21
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 3   GRVCPAP--CEGACVLG-INEPAVTIKNIECAIIDHAFEQGWIKPEIPTL--------RT 51
           G VCP    C G C L    E ++ I  ++    +        +   P L          
Sbjct: 127 GMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAY 186

Query: 52  GKKVAIVGSGPSGLGAAHQLNK 73
             K+A++G+GP+ +  A  L +
Sbjct: 187 SAKIALLGAGPASISCASFLAR 208

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460

 Score = 46.8 bits (111), Expect = 6e-08
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 48 TLRTGKKVAIVGSGPSGLGAAHQLNK 73
          T     ++ +VGSGP+G   A  L K
Sbjct: 2  TQEQTPQICVVGSGPAGFYTAQHLLK 27

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
          ++    ++AI+G+GP+GL A   L ++AG
Sbjct: 2  SISKDSRIAIIGAGPAGLAAGMYL-EQAG 29

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 43.7 bits (102), Expect = 7e-07
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
            V ++G+GP+GLGAA +LN+  G
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDG 34

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80
           K+ I+G+GP+GLGAA +L +       
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWH 37

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
          I  ++    V ++G GP+GL +A +L ++AG
Sbjct: 5  IGKVKGSHSVVVLGGGPAGLCSAFEL-QKAG 34

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
           L T +K+AI+G+GPSGL  A  L  E   + +
Sbjct: 2  CLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQV 34

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 40.6 bits (95), Expect = 9e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
           +  +      K V IVG+G +GL AA+ L   AG
Sbjct: 23 ARNGLKATSNPKHVVIVGAGMAGLSAAYVL-AGAG 56

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 12 GACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
          G    G +  A T   I+ +I+     + ++   I    T   V +VG+G +GL AA+++
Sbjct: 1  GRGSAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAET--DVVVVGAGSAGLSAAYEI 58

Query: 72 NKEAG 76
          +K   
Sbjct: 59 SKNPN 63

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 3/31 (9%)

Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
          +PTL+  + VAIVG+GPSGL AA  L ++AG
Sbjct: 1  VPTLQ--RDVAIVGAGPSGLAAATAL-RKAG 28

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 13  ACVLGINEPAVTIKNIECAI---IDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
            C + I+   +    + C         + +GW   +    +    V IVG+GPSG  AA 
Sbjct: 347 GCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAAR 406

Query: 70  QL 71
            L
Sbjct: 407 VL 408

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
          K V I+G G +GL AA  + KE  
Sbjct: 6  KHVVIIGGGITGLAAAFYMEKEIK 29

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
          G+ V ++G G SGL A++ L++
Sbjct: 2  GRTVVVLGGGISGLAASYHLSR 23

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEA 75
          + K++ IVG G +GL AA+   +  
Sbjct: 3  SSKRLVIVGGGITGLAAAYYAERAF 27

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 39.1 bits (89), Expect = 4e-05
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 50 RTGKKVAIVGSGPSGLGAAHQLNKEA 75
              ++AIVG G  G+ A ++L + A
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLA 79

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76
           G +V +VG+G SG+ AA +L  EAG
Sbjct: 3  VGPRVIVVGAGMSGISAAKRL-SEAG 27

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 51 TGKKVAIVGSGPSGLGAAHQLNK 73
          + K+VA++G+G SGL AA++L  
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKLKI 34

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 54 KVAIVGSGPSGLGAAHQLNK 73
           +AIVGSGPS   AA  L K
Sbjct: 5  YIAIVGSGPSAFFAAASLLK 24

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 47 PTLRTGKKVAIVGSGPSGLGAAHQLNK 73
              TG  VA+VG G SGL  AH L  
Sbjct: 11 MPRTTGMNVAVVGGGISGLAVAHHLRS 37

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 38.5 bits (89), Expect = 6e-05
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
          KK+ IVG+G SG     QL +
Sbjct: 4  KKILIVGAGFSGAVIGRQLAE 24

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 38.1 bits (88), Expect = 7e-05
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
              IVGSG  G   A++L K
Sbjct: 2  YDYIIVGSGLFGAVCANELKK 22

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKE 74
           ++AI+G+GPSG+         
Sbjct: 3  TRIAILGAGPSGMAQLRAFQSA 24

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
          H      + P        K++ IVG+G +GL     L + 
Sbjct: 7  HHHHSSGLVPRGS--HMKKRIGIVGAGTAGLHLGLFLRQH 44

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76
            KKV I+G+G +GL AA  L  + G
Sbjct: 7  AKKKVIIIGAGIAGLKAASTL-HQNG 31

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
            + +VGSG  GL  A ++  +  
Sbjct: 8  FDLFVVGSGFFGLTIAERVATQLD 31

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 55 VAIVGSGPSGLGAAH---QLNKEAGTEL 79
          V IVG+GP+GL AA    QL  +   +L
Sbjct: 38 VVIVGAGPAGLSAATRLKQLAAQHEKDL 65

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 54 KVAIVGSGPSGLGAAHQLNKEAGTEL 79
             ++G+G  G+ A H+L+ E G   
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTT 35

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 36.3 bits (83), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 1  FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
                   C    V   +        I  + +  A    + K       +   V IVG+
Sbjct: 16 HLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVS--DVIIVGA 73

Query: 61 GPSGLGAAHQLNKEA 75
          G SGL AA+ + K  
Sbjct: 74 GSSGLSAAYVIAKNR 88

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 26  KNIECAI---IDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAA 68
             I C     +   + +GW    I    +  +V +VG+GPSGL AA
Sbjct: 362 SPIRCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAA 407

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 35.9 bits (82), Expect = 4e-04
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 13/73 (17%)

Query: 2   TGRVCPAPCEGACVLG-INEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
              + P     A     I E  V+      A+    F       E         + IVG+
Sbjct: 40  LLELMPTLGTDAFTFSPIRESTVSR-----AMTRRYFADLDAHAET-------DIVIVGA 87

Query: 61  GPSGLGAAHQLNK 73
           G  GL AA+ L+ 
Sbjct: 88  GSCGLSAAYVLST 100

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
          V ++G G SGL A + L + +G
Sbjct: 6  VVVIGGGQSGLSAGYFL-RRSG 26

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 54 KVAIVGSGPSGLGAAHQLNKEAG 76
           V +VG+G SGL A ++L +E G
Sbjct: 18 DVLVVGAGFSGLYALYRL-RELG 39

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
            V +VG G SG+ AA  L  ++G
Sbjct: 5  CDVVVVGGGISGMAAAKLL-HDSG 27

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 35.1 bits (80), Expect = 8e-04
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
              IVG+G +G   A +L  
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS 50

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 9/38 (23%), Positives = 12/38 (31%)

Query: 43 KPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
            E         V ++G G  GL A   L       L+
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLL 67

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 54 KVAIVGSGPSGLGAAHQLNKE 74
          +  +VG+G  GL A   L + 
Sbjct: 2  RAVVVGAGLGGLLAGAFLARN 22

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.86
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.74
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.37
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.15
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.07
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.9
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.87
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.77
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.7
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.7
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.67
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.66
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.62
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.62
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.59
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.58
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.58
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.58
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.56
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.51
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.51
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.49
3dme_A	369	Conserved exported protein; structural genomics, P	98.47
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.44
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.44
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.43
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.42
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.42
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.42
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.42
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.4
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.4
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.39
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.39
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.39
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.39
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.39
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.38
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.37
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.37
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.37
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.37
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.37
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.36
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.36
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.36
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.36
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.36
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.35
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.33
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.33
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.33
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.33
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.32
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.32
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.32
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.32
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.32
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.32
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.31
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.31
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.31
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.31
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.31
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.3
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.3
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.3
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.3
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.3
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.3
3atr_A	453	Conserved archaeal protein; saturating double bond	98.3
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.29
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.29
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.29
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.28
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.28
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.28
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.28
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.27
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.27
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.27
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.27
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.27
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.26
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.24
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.24
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.24
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.23
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.23
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.22
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.22
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.22
4dna_A	463	Probable glutathione reductase; structural genomic	98.21
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.21
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.21
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.21
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.2
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.2
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.2
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.19
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.19
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.19
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.18
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.18
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.18
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.17
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.16
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.16
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.16
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.16
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.15
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.15
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.14
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.14
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.13
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.13
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.12
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.12
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.12
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.12
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.12
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.11
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.1
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.1
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.1
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.1
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.1
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.1
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.09
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.09
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.09
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.08
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.08
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.07
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.07
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.07
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.06
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.06
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.06
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.05
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.05
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.05
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.05
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.05
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.05
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.04
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.04
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.04
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.04
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.03
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.02
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.02
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.02
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.01
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.01
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.01
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.0
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.99
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.99
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.99
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.98
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.97
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.96
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.96
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.96
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.95
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.95
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.95
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.94
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.94
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.94
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.93
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.93
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.92
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.92
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.92
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.92
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.91
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.91
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.9
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.89
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.88
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.88
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.87
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.86
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.85
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.82
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.8
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.78
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.78
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.76
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.75
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.51
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.34
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.33
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.33
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.33
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.32
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.29
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.28
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.28
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.28
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.27
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.17
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.17
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.13
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.11
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.09
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.04
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.03
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.02
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.99
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.98
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.97
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.97
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.96
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.95
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.95
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.93
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.93
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.93
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.92
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.91
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.88
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.88
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.88
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.86
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.86
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.85
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.83
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.82
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.8
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.79
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.78
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.77
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.76
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.75
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.74
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.74
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.73
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.73
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.73
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.72
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.72
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.71
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.69
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.69
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.68
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.67
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.66
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.61
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.61
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.61
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.59
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.58
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.57
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.57
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.56
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.55
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.55
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.55
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.55
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.54
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.54
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.53
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.53
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.52
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.5
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.5
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.49
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.46
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.46
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.43
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.43
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.42
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.39
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.38
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.34
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.33
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.3
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.29
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.28
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.26
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.25
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.25
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.24
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.23
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.22
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.2
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.19
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.18
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.17
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.16
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.16
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.14
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.13
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.11
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.08
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.07
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.07
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.04
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.04
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.02
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.02
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.0
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.98
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.96
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.94
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.94
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.93
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.92
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.92
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.91
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.9
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.88
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.87
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.87
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.85
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.84
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.83
4dna_A	463	Probable glutathione reductase; structural genomic	95.83
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.83
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.81
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.8
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.79
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.79
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.76
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.75
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.75
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.71
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.7
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.69
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.65
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.62
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.61
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.61
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.59
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.59
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.58
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.58
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.57
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.55
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.53
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.5
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.5
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.49
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.49
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.49
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.45
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.45
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.42
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.41
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.38
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	95.35
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.35
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.29
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.28
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.27
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.26
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.25
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.25
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.24
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.24
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.22
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.21
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.2
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.18
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.17
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.17
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.17
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.17
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.17
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.16
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.16
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.14
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.14
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.14
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.1
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.09
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.08
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.08
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.08
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.07
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.06
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.05
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.03
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.01
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.99
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.97
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.95
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.93
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.91
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.91
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.9
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.9
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.89
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.89
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.88
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.86
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	94.86
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.85
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.83
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.82
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.82
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.81
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	94.8
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.77
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.76
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.75
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.75
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.73
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	94.72
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.72
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.71
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	94.69
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.68
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.67
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.62
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.61
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.6
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.58
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.57
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	94.56
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.55
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.55
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.55
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.54
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.53
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.53
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.53
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	94.5
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.5
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.48
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.48
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.48
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.43
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.42
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.42
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	94.41
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.4
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.37
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.34
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.33
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.31
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.24
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.2
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.19
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.19
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	94.18
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.17
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.12
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	94.12
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.11
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.1
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	94.09
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.09
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.08
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.07
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.06
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.06
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.03
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.03
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.99
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.97
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	93.94
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	93.94
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	93.94
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.94
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.93
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	93.9
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	93.89
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.89
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.89
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	93.86
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	93.83
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.83
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	93.82
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	93.81
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.79
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	93.78
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.78
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.76
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.74
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	93.7

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.86  E-value=4.9e-22  Score=143.65  Aligned_cols=80  Identities=41%  Similarity=0.814  Sum_probs=72.3

Q ss_pred             CccccCcc--chHHHhhcCCC-CCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001          1 FTGRVCPA--PCEGACVLGIN-EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~-~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ||||+||+  |||.+|+++.. ++||.|+.+++++.+..+..+|..+..+.+.+.++|+||||||||+++|++|+++|++
T Consensus        68 ~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~  147 (456)
T 2vdc_G           68 ICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGYE  147 (456)
T ss_dssp             HHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             cccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence            58999999  99999999987 9999999999999999888888765444446678999999999999999999999999


Q ss_pred             eee
Q psy11001         78 ELI   80 (81)
Q Consensus        78 v~v   80 (81)
                      |+|
T Consensus       148 V~v  150 (456)
T 2vdc_G          148 VHV  150 (456)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.74  E-value=1.3e-18  Score=135.34  Aligned_cols=80  Identities=24%  Similarity=0.355  Sum_probs=67.3

Q ss_pred             CccccCcc--chHHHhhcCCC-CCccchhhHHHHHHHhhHhhCCCCCCCC--------CccCCCcEEEECCCHHHHHHHH
Q psy11001          1 FTGRVCPA--PCEGACVLGIN-EPAVTIKNIECAIIDHAFEQGWIKPEIP--------TLRTGKKVAIVGSGPSGLGAAH   69 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~-~~~i~i~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~viG~G~aG~~~A~   69 (81)
                      ||||+||+  +|+.+|+++.. ++||+|+.+|+|+.++....+|.....|        ...+.++|+||||||||+++|.
T Consensus       125 ~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpAGl~aA~  204 (1025)
T 1gte_A          125 TCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCAS  204 (1025)
T ss_dssp             HHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHHHHHHHH
T ss_pred             hhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHHHHHHHH
Confidence            58999997  99999999874 6899999999999999877776532222        1135689999999999999999


Q ss_pred             HHhHcCC-Ceee
Q psy11001         70 QLNKEAG-TELI   80 (81)
Q Consensus        70 ~L~~~g~-~v~v   80 (81)
                      +|+++|+ +|+|
T Consensus       205 ~L~~~G~~~Vtv  216 (1025)
T 1gte_A          205 FLARLGYSDITI  216 (1025)
T ss_dssp             HHHHTTCCCEEE
T ss_pred             HHHhcCCCcEEE
Confidence            9999999 6876

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.37  E-value=6.3e-14  Score=101.79  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             CccccCcc---chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCC---------CCCCCCccCCCcEEEECCCHHHHHHH
Q psy11001          1 FTGRVCPA---PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWI---------KPEIPTLRTGKKVAIVGSGPSGLGAA   68 (81)
Q Consensus         1 ~~~riC~~---~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~v~viG~G~aG~~~A   68 (81)
                      +|||+||+   +|+..|.+ ..+.++.+..++.+.........+.         +.........++|+|||||++|+++|
T Consensus        30 ~~~rvc~~~~~l~~~~g~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA  108 (497)
T 2bry_A           30 LCQDVLSSFQGLCRALGVE-SGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAA  108 (497)
T ss_dssp             SHHHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHH
Confidence            68999998   79999999 4677888888877654432211110         01111234568999999999999999


Q ss_pred             HHHhHcCCCeee
Q psy11001         69 HQLNKEAGTELI   80 (81)
Q Consensus        69 ~~L~~~g~~v~v   80 (81)
                      ..|+++|++|+|
T Consensus       109 ~~La~~G~~V~l  120 (497)
T 2bry_A          109 VELALLGARVVL  120 (497)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             HHHHHCCCeEEE
Confidence            999999999987

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.15  E-value=2.9e-11  Score=82.86  Aligned_cols=68  Identities=21%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             ccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhH--cCCCee
Q psy11001          2 TGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNK--EAGTEL   79 (81)
Q Consensus         2 ~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~--~g~~v~   79 (81)
                      |++.|++.++.++    ..+|+.+..+++++.++.+..-       .+...++|+||||||||++||++|++  .|++|+
T Consensus        26 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~   94 (326)
T 3fpz_A           26 LSDIVKKEDWSDF----KFAPIRESTVSRAMTSRYFKDL-------DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVC   94 (326)
T ss_dssp             TTTTCCSTTCTTC----CCCCCCHHHHHHHHHHHHHHHH-------HHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEE
T ss_pred             hhhhccccccccc----ccCCccHHHHHHHHHHHHHhhh-------hhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEE
Confidence            5666776555433    3468888889988887766542       12345789999999999999999975  599998


Q ss_pred             e
Q psy11001         80 I   80 (81)
Q Consensus        80 v   80 (81)
                      |
T Consensus        95 v   95 (326)
T 3fpz_A           95 I   95 (326)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.07  E-value=4.1e-11  Score=90.52  Aligned_cols=75  Identities=27%  Similarity=0.402  Sum_probs=48.3

Q ss_pred             cccCccchHHHhhcC-CCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          3 GRVCPAPCEGACVLG-INEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         3 ~riC~~~C~~~C~~~-~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|.|++ |+. |.+. ..+++..+-.++.+.. ......|.+...+.....++|+|||||+||+++|..|+++|++|+|
T Consensus       342 ~~~ci~-Cn~-C~~~~~~~~~~~~C~~n~~~g-~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtl  417 (729)
T 1o94_A          342 IRVCIG-CNV-CISRWEIGGPPMICTQNATAG-EEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHL  417 (729)
T ss_dssp             CCCCCC-CCH-HHHHHHHSSSCCCCSSCTTTT-THHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cccccc-cch-hcccccccCCceeeccCcccc-ccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            478998 885 9865 3333333333332222 1222334322222334568999999999999999999999999987

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.07  E-value=2.2e-10  Score=88.44  Aligned_cols=72  Identities=25%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             chHHHhhcCCCCCccchhhHHHHHHHhhHhh-CCCCCC-CCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          9 PCEGACVLGINEPAVTIKNIECAIIDHAFEQ-GWIKPE-IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         9 ~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|...|.+...++|+.|..+++|+.+..+.+ ++.... .+.....++|+|||+|++||++|++|+++|++|+|
T Consensus       233 ~~~~~~~r~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v  306 (852)
T 2xag_A          233 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTL  306 (852)
T ss_dssp             HHHHHCCTTTTSCHHHHHHHHHHHHHTTSSSCSSCBCSSCCCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhCCCcccCCcHHHHHHHHHHHHHHHHhcCcccccCCcccCCCCeEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            4788899999999999999999999877654 332221 22234568999999999999999999999999987

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.05  E-value=1.6e-10  Score=72.51  Aligned_cols=28  Identities=32%  Similarity=0.507  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+||||||||+++|+.|+++|++|+|
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v   30 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHL   30 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            5799999999999999999999999987

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.04  E-value=2.2e-10  Score=85.64  Aligned_cols=72  Identities=25%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             chHHHhhcCCCCCccchhhHHHHHHHhhHhh-CCCCC-CCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          9 PCEGACVLGINEPAVTIKNIECAIIDHAFEQ-GWIKP-EIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         9 ~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|..++.|...++|+.|..+++++.+..+.+ ++... ..+.....++|+|||+|++|+++|+.|+++|++|+|
T Consensus        62 ~~~~~~~r~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~  135 (662)
T 2z3y_A           62 ATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTL  135 (662)
T ss_dssp             HHHHHSCTTGGGCHHHHHHHHHHHHHTTSSSCSSCBCSSCCCSSCCCEEEEECCBHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHhcCCCccCChHHHHHHHHHHHHHHHHhcCCccccCCCcccCCCeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            5777788888899999999999999877654 43332 122335668999999999999999999999999987

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.90  E-value=5.7e-10  Score=82.16  Aligned_cols=75  Identities=23%  Similarity=0.457  Sum_probs=56.4

Q ss_pred             ccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCC--------------ccCCCcEEEECCCHHHHHH
Q psy11001          2 TGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPT--------------LRTGKKVAIVGSGPSGLGA   67 (81)
Q Consensus         2 ~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~viG~G~aG~~~   67 (81)
                      +|++   +| .+|.+...+.++.+...+.+..+......|..+..+.              +...++|+|||+|++|+++
T Consensus        66 ~g~v---~C-~~Ch~~~~~~~~~c~~ch~~~~d~p~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~a  141 (572)
T 1d4d_A           66 IGEI---AC-TSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAA  141 (572)
T ss_dssp             CSCC---CG-GGTSCSSSCCCCGGGGTCCCCCCCTTCCCCCCCCCCTTSSHHHHHHHHHSCCCEECSEEEECCSHHHHHH
T ss_pred             CCCC---Cc-ccccccccCCCCcccccccccccCCCccccccCCccccccHHHHHHHhhccCCCCCCEEEECCCHHHHHH
Confidence            3555   79 8999998888888888887654444444565433221              1235699999999999999


Q ss_pred             HHHHhHcCCCeee
Q psy11001         68 AHQLNKEAGTELI   80 (81)
Q Consensus        68 A~~L~~~g~~v~v   80 (81)
                      |+.|+++|++|+|
T Consensus       142 a~~~~~~g~~v~~  154 (572)
T 1d4d_A          142 AVSARDAGAKVIL  154 (572)
T ss_dssp             HHHHHSSSCCEEE
T ss_pred             HHHHHHCCCcEEE
Confidence            9999999999987

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.87  E-value=4.6e-10  Score=84.11  Aligned_cols=32  Identities=34%  Similarity=0.546  Sum_probs=29.3

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....++|+|||||+||+++|+.|+++|++|+|
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~l  419 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVL  419 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            34568999999999999999999999999987

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.77  E-value=4.6e-09  Score=71.66  Aligned_cols=29  Identities=34%  Similarity=0.418  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||+++|+.|+++|++|+|
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v   32 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLM   32 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            37899999999999999999999999987

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.70  E-value=2.1e-08  Score=72.92  Aligned_cols=64  Identities=16%  Similarity=0.066  Sum_probs=47.6

Q ss_pred             CCCCCccchhhHHHHHHHhhHhhCCC---CCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         17 GINEPAVTIKNIECAIIDHAFEQGWI---KPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        17 ~~~~~~i~i~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++++.|..+++++.+.....+..   ....+.....++|+|||||++|+++|..|++.|++|+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~l   71 (523)
T 1mo9_A            5 NARNDHLTINQWATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLI   71 (523)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHHCTTCCCEEEECCTTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccchhhccchhhhhHHHhhccccchhhhccCCCCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            35789999999987777655442211   11112234457999999999999999999999999987

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.70  E-value=9e-09  Score=73.35  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=27.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|+|||||++||+||++|+++|++|+|
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~V   29 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLL   29 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEE
Confidence            6899999999999999999999999987

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.67  E-value=1.6e-08  Score=68.22  Aligned_cols=29  Identities=28%  Similarity=0.477  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||++||++|+|+|++|+|
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~l   34 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIAL   34 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999987

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.66  E-value=1.8e-08  Score=67.50  Aligned_cols=29  Identities=31%  Similarity=0.433  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||++||.+|+++|++|+|
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~l   32 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVM   32 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            47899999999999999999999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.62  E-value=2.1e-08  Score=67.43  Aligned_cols=31  Identities=32%  Similarity=0.473  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||++|+++|..|+++|++|+|
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~v   50 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPIL   50 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            4568999999999999999999999999987

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.62  E-value=2.7e-08  Score=67.02  Aligned_cols=29  Identities=28%  Similarity=0.510  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||||+++|.+|+++|++|+|
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~l   34 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVM   34 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            58999999999999999999999999987

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.59  E-value=3.7e-08  Score=68.74  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+.++|+|||||++|+++|+.|+++|++|+|
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v   51 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDV   51 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            34568999999999999999999999999987

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.58  E-value=8.1e-09  Score=72.46  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             CCccchhhHHHHHHHhhHhhCCCCCCCCC--c-----------------cCCCcEEEECCCHHHHHHHHHHhHc--CCCe
Q psy11001         20 EPAVTIKNIECAIIDHAFEQGWIKPEIPT--L-----------------RTGKKVAIVGSGPSGLGAAHQLNKE--AGTE   78 (81)
Q Consensus        20 ~~~i~i~~l~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~v~viG~G~aG~~~A~~L~~~--g~~v   78 (81)
                      .-.+++..+++++.++.....|..+..+.  .                 ...++|+|||+|++|+++|+.|+++  |++|
T Consensus        14 ~~~v~~~~~er~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V   93 (326)
T 2gjc_A           14 QLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV   93 (326)
T ss_dssp             --CGGGSCCCCTTTTTCCSTTCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCE
T ss_pred             ccccchHHHHHHHHHHHHhcCCCccccccccccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCeE
Confidence            34677777999988887777775433211  0                 1124899999999999999999999  9998


Q ss_pred             ee
Q psy11001         79 LI   80 (81)
Q Consensus        79 ~v   80 (81)
                      +|
T Consensus        94 ~v   95 (326)
T 2gjc_A           94 CI   95 (326)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.58  E-value=3.6e-08  Score=67.73  Aligned_cols=28  Identities=36%  Similarity=0.437  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -||+||||||+|+++|..|+++|++|+|
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v   29 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTI   29 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEE
Confidence            3799999999999999999999999987

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.58  E-value=1.2e-08  Score=76.22  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=28.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||+||+++|..|+++|++|+|
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~l  401 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTL  401 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            4568999999999999999999999999987

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.56  E-value=3.3e-08  Score=70.25  Aligned_cols=31  Identities=39%  Similarity=0.685  Sum_probs=27.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      ....+|+|||||++||+||++|+++ |++|+|
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~V   39 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMI   39 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEE
Confidence            3457999999999999999999985 999987

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.51  E-value=7.2e-08  Score=66.23  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||++|+++|++|+++|++|+|
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~l   45 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTAL   45 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            3457999999999999999999999999987

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.51  E-value=1.6e-07  Score=66.80  Aligned_cols=62  Identities=19%  Similarity=0.291  Sum_probs=42.4

Q ss_pred             chHHHhhcCCC------CCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          9 PCEGACVLGIN------EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         9 ~C~~~C~~~~~------~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+..|++...      .+++.+...+. +    ..++  .   +.....++|+|||||++|+++|+.|+++|++|+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~----~~~~--~---~~~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~V   72 (376)
T 2e1m_A            5 TYEQLARELLLVGPAPTNEDLKLRYLDV-L----IDNG--L---NPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTI   72 (376)
T ss_dssp             HHHHHHHHHHTBCCTTTCCBHHHHHHHH-H----HTSC--S---SSCCSCCEEEEECCBHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHhhhccCcccCCCCCChhHHHH-H----Hhcc--C---CCCCCCceEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            68999998765      33333322221 1    1112  1   2223467999999999999999999999999987

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.49  E-value=1.1e-07  Score=63.35  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||+||+++|..|+++|++|+|
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   32 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVV   32 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence            347999999999999999999999999987

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.47  E-value=1.3e-07  Score=64.14  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~v   32 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLV   32 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999987

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.44  E-value=1.4e-07  Score=65.72  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|++|+++|++|+|
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~v   28 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEV   28 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEE
Confidence            4799999999999999999999999987

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.44  E-value=2.2e-07  Score=68.81  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|+.|+++|++|+|
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~V  135 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPII  135 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            347999999999999999999999999987

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.42  E-value=1.8e-07  Score=61.78  Aligned_cols=28  Identities=36%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|+++|++|+|
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~l   30 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILL   30 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            6899999999999999999999999987

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.42  E-value=4e-08  Score=72.21  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+||||||||+++|..|+++|++|+|
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~l  135 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAV  135 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEE
Confidence            357999999999999999999999999987

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.42  E-value=1.9e-07  Score=62.24  Aligned_cols=29  Identities=34%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   43 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLV   43 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            47999999999999999999999999987

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.40  E-value=1.8e-07  Score=65.14  Aligned_cols=29  Identities=34%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v   33 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKI   33 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            36899999999999999999999999987

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.40  E-value=2.9e-07  Score=64.26  Aligned_cols=30  Identities=33%  Similarity=0.613  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ..++|+|||||++|+++|++|+++| ++|+|
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v   35 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTI   35 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEE
Confidence            3478999999999999999999999 89987

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.39  E-value=2.2e-07  Score=65.06  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|++|+++|++|+|
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~v   28 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIV   28 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            3799999999999999999999999987

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.39  E-value=3.1e-07  Score=64.51  Aligned_cols=29  Identities=24%  Similarity=0.362  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|+ +|+|
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~v   35 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTV   35 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            4789999999999999999999999 8887

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.39  E-value=2.4e-07  Score=62.08  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+||+++|..|+++|++|+|
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   35 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKI   35 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            46899999999999999999999999987

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.39  E-value=1.7e-07  Score=66.51  Aligned_cols=30  Identities=27%  Similarity=0.415  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+||||||+|+++|+.|+++|++|+|
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~v   50 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTV   50 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence            347899999999999999999999999987

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.39  E-value=2.1e-07  Score=65.03  Aligned_cols=28  Identities=36%  Similarity=0.497  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|+++|++|+|
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~v   29 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLL   29 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            5799999999999999999999999987

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.38  E-value=2.9e-07  Score=63.83  Aligned_cols=28  Identities=36%  Similarity=0.617  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||||++|+++|++|+++|++|+|
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~v   32 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLV   32 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            6899999999999999999999999987

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.37  E-value=3e-07  Score=64.10  Aligned_cols=29  Identities=31%  Similarity=0.366  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v   33 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDV   33 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999987

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.37  E-value=4.4e-07  Score=66.50  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|+||+++|+.|+++|++|+|
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~v  154 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVIL  154 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            357999999999999999999999999987

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.37  E-value=3.2e-07  Score=65.36  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++||++|+.|+++|++|+|
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v   39 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTV   39 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            357999999999999999999999999987

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.37  E-value=3.4e-07  Score=62.94  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~l   33 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTV   33 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999999999987

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.37  E-value=3.4e-07  Score=62.89  Aligned_cols=29  Identities=34%  Similarity=0.479  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||++|+++|++|+++|++|+|
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~v   34 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHI   34 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            46899999999999999999999999987

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.36  E-value=4.2e-07  Score=59.63  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|.+|+|
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~l   31 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGL   31 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            36899999999999999999999999987

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.36  E-value=2.2e-07  Score=65.66  Aligned_cols=28  Identities=29%  Similarity=0.557  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      ++|+|||||++||++|++|+++|+  +|+|
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~v   32 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVL   32 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEE
Confidence            589999999999999999999999  8887

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.36  E-value=3.6e-07  Score=62.76  Aligned_cols=29  Identities=34%  Similarity=0.508  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||++|+++|++|+++|++|+|
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~v   31 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLL   31 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999987

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.36  E-value=3.3e-07  Score=63.47  Aligned_cols=28  Identities=43%  Similarity=0.653  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|+++|++|+|
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v   30 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVI   30 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            5899999999999999999999999987

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.36  E-value=2.7e-07  Score=63.13  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||||++|+++|++|+++|++|+|
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~v   30 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLM   30 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            5899999999999999999999999987

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.35  E-value=2.2e-07  Score=63.47  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=27.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||++|+++|++|+ +|++|+|
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~V~v   36 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHGRVVV   36 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTSCEEE
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCCCEEE
Confidence            34689999999999999999999 6999987

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.33  E-value=3.8e-07  Score=65.66  Aligned_cols=29  Identities=31%  Similarity=0.449  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~v   32 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVV   32 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            36899999999999999999999999987

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.33  E-value=6.3e-07  Score=68.64  Aligned_cols=57  Identities=25%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             chhhHHHHHHHhhHhhC-CC-----CCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         24 TIKNIECAIIDHAFEQG-WI-----KPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        24 ~i~~l~~~~~~~~~~~~-~~-----~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+..+++++.+..+.+. +.     ....+.....++|+|||+|++|+++|+.|+++|++|+|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v  364 (776)
T 4gut_A          302 EVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTV  364 (776)
T ss_dssp             HHHHHHHHHHHHTSSSCTTCCCCGGGCSSCGGGTSCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHhhhhhcccccccccccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            44566667666654321 10     01122334568999999999999999999999999987

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.33  E-value=4.3e-07  Score=62.87  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~v   39 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRL   39 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            47999999999999999999999999987

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.33  E-value=4.5e-07  Score=62.58  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhH-cC-CCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNK-EA-GTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~-~g-~~v~v   80 (81)
                      ....+|+|||||++|+++|++|++ +| ++|+|
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~v   51 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAV   51 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEE
Confidence            345799999999999999999999 99 99987

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.32  E-value=3.9e-07  Score=63.53  Aligned_cols=29  Identities=38%  Similarity=0.571  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v   54 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSV   54 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            46999999999999999999999999987

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.32  E-value=1.9e-07  Score=65.42  Aligned_cols=29  Identities=38%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC------CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA------GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g------~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|      ++|+|
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~v   39 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTL   39 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEE
Confidence            468999999999999999999999      89887

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.32  E-value=5.6e-07  Score=67.39  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|++|+++|++|+|
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~v  292 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTL  292 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEE
Confidence            357999999999999999999999999987

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.32  E-value=5.1e-07  Score=63.19  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++ |+|
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v   33 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTL   33 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            36899999999999999999999999 987

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.32  E-value=4.2e-07  Score=61.20  Aligned_cols=29  Identities=31%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~l   44 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAI   44 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999887

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.32  E-value=4.4e-07  Score=61.09  Aligned_cols=28  Identities=32%  Similarity=0.490  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|+++|++|+|
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~v   31 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVI   31 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            6899999999999999999999999987

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.31  E-value=4.4e-07  Score=63.03  Aligned_cols=29  Identities=24%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~v   34 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVV   34 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            36899999999999999999999999987

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.31  E-value=3.8e-07  Score=61.15  Aligned_cols=29  Identities=31%  Similarity=0.456  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   33 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVL   33 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            36899999999999999999999999876

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.31  E-value=5.1e-07  Score=64.45  Aligned_cols=30  Identities=27%  Similarity=0.475  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|+.|+++|++|+|
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~l   55 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLV   55 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            357999999999999999999999999987

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.31  E-value=4.7e-07  Score=61.12  Aligned_cols=29  Identities=38%  Similarity=0.557  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~l   36 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLI   36 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            47899999999999999999999999886

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.31  E-value=5.5e-07  Score=64.33  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|+.|+++|++|+|
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~v   39 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLH   39 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            47899999999999999999999999987

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.30  E-value=4.6e-07  Score=60.59  Aligned_cols=28  Identities=36%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|++|+++|..|+++|++|+|
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~l   29 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGL   29 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            5899999999999999999999999876

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.30  E-value=4.2e-07  Score=65.58  Aligned_cols=29  Identities=41%  Similarity=0.611  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      .++|+|||||+|||+||+.|+++| ++|+|
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~V   37 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLV   37 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEE
Confidence            368999999999999999999999 99987

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.30  E-value=5.7e-07  Score=65.26  Aligned_cols=30  Identities=27%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+||+|+++|..|+++|++|+|
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~v   39 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVV   39 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            347899999999999999999999999987

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.30  E-value=4.4e-07  Score=64.24  Aligned_cols=29  Identities=41%  Similarity=0.703  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v   44 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVL   44 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            47899999999999999999999999987

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.30  E-value=5.6e-07  Score=64.65  Aligned_cols=29  Identities=21%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~l   53 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAV   53 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            47999999999999999999999999987

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.30  E-value=5.2e-07  Score=60.93  Aligned_cols=29  Identities=31%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   33 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRF   33 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            36899999999999999999999999887

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.30  E-value=4e-07  Score=64.71  Aligned_cols=29  Identities=34%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~v   34 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILL   34 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            36899999999999999999999999987

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.29  E-value=4.7e-07  Score=61.53  Aligned_cols=30  Identities=30%  Similarity=0.483  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+++|..|+++|++|+|
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~l   42 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLV   42 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            457999999999999999999999999876

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.29  E-value=5.7e-07  Score=65.24  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+||||||+|+++|..|+++|++|+|
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~v   40 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMV   40 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            457999999999999999999999999987

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.29  E-value=6.3e-07  Score=61.37  Aligned_cols=29  Identities=31%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~l   42 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRI   42 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999999999987

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.28  E-value=5.5e-07  Score=60.76  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~l   36 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLL   36 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999886

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.28  E-value=6.2e-07  Score=66.87  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|++|+++|++|+|
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~v  300 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTL  300 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            347999999999999999999999999987

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.28  E-value=5.6e-07  Score=63.33  Aligned_cols=29  Identities=48%  Similarity=0.690  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v   33 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAV   33 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.28  E-value=7.3e-07  Score=63.64  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~l   31 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTAL   31 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEE
Confidence            47999999999999999999999999987

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.27  E-value=6.4e-07  Score=59.90  Aligned_cols=28  Identities=29%  Similarity=0.525  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ++|+|||+|++|+++|..|+++|+ +|+|
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~l   30 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVL   30 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEE
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEE
Confidence            579999999999999999999999 9876

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.27  E-value=8e-07  Score=63.33  Aligned_cols=30  Identities=37%  Similarity=0.523  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|+.|+++|++|+|
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~l   54 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLL   54 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEE
Confidence            447999999999999999999999999987

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.27  E-value=6.2e-07  Score=63.93  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=27.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|++|+++|++|+++|++|+|
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v   67 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLL   67 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEE
Confidence            6999999999999999999999999987

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.27  E-value=6.7e-07  Score=64.21  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~l   54 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAI   54 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEE
Confidence            47999999999999999999999999987

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.27  E-value=7.6e-07  Score=55.74  Aligned_cols=28  Identities=43%  Similarity=0.579  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||+|++|+.+|..|++.|.+|++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~l   29 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLV   29 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            5799999999999999999999999987

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.26  E-value=6.7e-07  Score=64.75  Aligned_cols=29  Identities=31%  Similarity=0.455  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||++|+++|+.|+++|++|+|
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~v   33 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLV   33 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            46899999999999999999999999987

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.24  E-value=7.3e-07  Score=61.95  Aligned_cols=28  Identities=36%  Similarity=0.498  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|+|||||++|+++|..|+++  |++|+|
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v   30 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDI   30 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEE
Confidence            3799999999999999999999  999987

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.24  E-value=9.1e-07  Score=63.12  Aligned_cols=30  Identities=37%  Similarity=0.449  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|+.|+++|++|+|
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~v   61 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTV   61 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            357999999999999999999999999987

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.24  E-value=7.5e-07  Score=63.52  Aligned_cols=29  Identities=38%  Similarity=0.551  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v   41 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTV   41 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            47999999999999999999999999987

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.23  E-value=8.6e-07  Score=60.46  Aligned_cols=28  Identities=39%  Similarity=0.598  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ++|+|||||++|+++|..|++.|+ +|+|
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~l   33 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVII   33 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEE
Confidence            689999999999999999999999 8876

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.23  E-value=7.3e-07  Score=64.48  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~l   35 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLL   35 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999999999987

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.22  E-value=9.6e-07  Score=65.63  Aligned_cols=29  Identities=41%  Similarity=0.520  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~L   51 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTI   51 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEE
Confidence            47999999999999999999999999987

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.22  E-value=1.2e-06  Score=61.95  Aligned_cols=29  Identities=34%  Similarity=0.399  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .++|+|||+|++|+++|+.|+++  |++|+|
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~L  109 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITI  109 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEE
Confidence            47899999999999999999998  999887

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.22  E-value=5.6e-07  Score=61.43  Aligned_cols=28  Identities=29%  Similarity=0.287  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhH---cCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNK---EAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~---~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|++   .|++|+|
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v   32 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAV   32 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEE
Confidence            479999999999999999999   9999887

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.21  E-value=9.1e-07  Score=63.11  Aligned_cols=29  Identities=14%  Similarity=0.258  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|+++|++|+|
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~l   33 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAI   33 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEE
Confidence            47899999999999999999999999987

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.21  E-value=1.2e-06  Score=62.13  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|+++|++|+|
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~v   32 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTV   32 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEE
Confidence            6899999999999999999999999987

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.21  E-value=1.2e-06  Score=61.74  Aligned_cols=29  Identities=28%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++ |++|+|
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v   36 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLV   36 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999999 999987

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.21  E-value=1.1e-06  Score=62.94  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|..|++.|++|+|
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~l   37 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVAC   37 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            457999999999999999999999999987

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.21  E-value=8.5e-07  Score=62.22  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++  |++|+|
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~v   66 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLL   66 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEE
Confidence            46899999999999999999999  999987

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.21  E-value=8.1e-07  Score=65.12  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|++|+++|+.|+++|++|+|
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~v  149 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVIL  149 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            456899999999999999999999999987

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.20  E-value=1.1e-06  Score=64.41  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ...++|+|||||+||+++|..|+++  |++|+|
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~v   66 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIM   66 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEE
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEE
Confidence            4467999999999999999999999  888886

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.20  E-value=1e-06  Score=62.46  Aligned_cols=29  Identities=31%  Similarity=0.405  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|  ++|+|
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v   34 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITL   34 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEE
Confidence            368999999999999999999999  99887

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.20  E-value=1.4e-06  Score=61.06  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      ++|+|||+|+||+++|..|+++|+  +|+|
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~l   31 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIAL   31 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEE
Confidence            689999999999999999999999  6765

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.19  E-value=1e-06  Score=59.44  Aligned_cols=29  Identities=34%  Similarity=0.530  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++ |++|+|
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~v   68 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAI   68 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEE
Confidence            46899999999999999999997 999987

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.19  E-value=8.4e-07  Score=60.65  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC------CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA------GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g------~~v~v   80 (81)
                      +|+|||||++|+++|++|+++|      ++|+|
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~v   34 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKV   34 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEE
Confidence            7999999999999999999998      88886

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.19  E-value=1.4e-06  Score=62.36  Aligned_cols=30  Identities=17%  Similarity=0.379  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|..|+++|++|+|
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~l   48 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAV   48 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            357999999999999999999999999987

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.18  E-value=1.4e-06  Score=63.41  Aligned_cols=30  Identities=33%  Similarity=0.392  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+||||||||+++|.+|+++|++|+|
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~l  240 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGL  240 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEE
Confidence            357899999999999999999999999876

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.18  E-value=1.6e-06  Score=61.98  Aligned_cols=31  Identities=32%  Similarity=0.368  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||||++|+++|++|+++|++|+|
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v   57 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLI   57 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEE
Confidence            3457999999999999999999999999987

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.18  E-value=1.4e-06  Score=61.86  Aligned_cols=29  Identities=41%  Similarity=0.606  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|+  +|+|
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v   36 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTL   36 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEE
Confidence            4799999999999999999999999  8876

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.18  E-value=1.6e-06  Score=61.89  Aligned_cols=29  Identities=24%  Similarity=0.385  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~l   32 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTL   32 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999999999887

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.17  E-value=1.4e-06  Score=64.29  Aligned_cols=30  Identities=33%  Similarity=0.482  Sum_probs=26.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|+.|+++|++|+|
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~V   77 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALV   77 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            347999999999999999999999999987

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.16  E-value=1.6e-06  Score=61.90  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~l   30 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTAC   30 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999987

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.16  E-value=1.5e-06  Score=63.08  Aligned_cols=29  Identities=31%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH---cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK---EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~---~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|++   .|++|+|
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~l   36 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITL   36 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            4689999999999999999999   9999987

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.16  E-value=1.7e-06  Score=62.51  Aligned_cols=29  Identities=24%  Similarity=0.408  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~l   31 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLM   31 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEE
Confidence            36899999999999999999999999987

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.16  E-value=9.7e-07  Score=62.22  Aligned_cols=29  Identities=34%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++| ++|+|
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~v   52 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLV   52 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEE
Confidence            468999999999999999999999 99987

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.16  E-value=1.9e-06  Score=61.33  Aligned_cols=30  Identities=27%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+++|..|++.|++|+|
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~l   34 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTC   34 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            357899999999999999999999999987

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.15  E-value=1.5e-06  Score=62.96  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|++|+++|+.|+++|++|+|
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~v   69 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLV   69 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.15  E-value=1.7e-06  Score=63.24  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+||||||+|+++|..|+++|++|+|
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~v   54 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLV   54 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            36899999999999999999999999987

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.14  E-value=1.7e-06  Score=61.86  Aligned_cols=28  Identities=29%  Similarity=0.465  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|++.|++|+|
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~l   32 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLM   32 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            6899999999999999999999999987

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.14  E-value=1.6e-06  Score=62.32  Aligned_cols=30  Identities=17%  Similarity=0.355  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||++|+++|..|++.|++|+|
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~l   34 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAV   34 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            347999999999999999999999999987

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.13  E-value=1.9e-06  Score=62.12  Aligned_cols=29  Identities=17%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|++ .|++|+|
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~l   32 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAV   32 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEE
Confidence            4789999999999999999999 9999987

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.13  E-value=1.8e-06  Score=61.58  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~l   33 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTAC   33 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999987

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.12  E-value=2.1e-06  Score=62.76  Aligned_cols=29  Identities=34%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH---cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK---EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~---~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|++   .|++|+|
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~l   56 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITL   56 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEE
Confidence            5789999999999999999999   9999987

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.12  E-value=2e-06  Score=60.10  Aligned_cols=28  Identities=36%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||||++|+++|+.|+++|++|+|
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v   29 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLV   29 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            4799999999999999999999999987

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.12  E-value=1.8e-06  Score=60.60  Aligned_cols=30  Identities=33%  Similarity=0.417  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC--eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT--ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~--v~v   80 (81)
                      ..++|+|||+|+||+++|..|+++|++  |+|
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~l   39 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLV   39 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEE
Confidence            347899999999999999999999998  665

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.12  E-value=1.3e-06  Score=62.81  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhH---cCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNK---EAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~---~g~~v~v   80 (81)
                      ++|+|||||++|+++|+.|++   .|++|+|
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~l   33 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTL   33 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            589999999999999999999   9999987

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.12  E-value=2e-06  Score=61.30  Aligned_cols=28  Identities=29%  Similarity=0.406  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~l   31 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAI   31 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            6899999999999999999999999987

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.11  E-value=2.5e-06  Score=60.66  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~l   31 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTI   31 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            6899999999999999999999999987

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.11  E-value=2.4e-06  Score=59.43  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=25.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      +|||+|||||+||+++|.+|++.+.  +|+|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtl   32 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTL   32 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEE
Confidence            6899999999999999999999886  4554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.10  E-value=2.5e-06  Score=61.11  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~l   32 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVAL   32 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47899999999999999999999999987

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.10  E-value=3e-06  Score=61.59  Aligned_cols=30  Identities=23%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+||+|+++|..|++.|++|+|
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~l   60 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMV   60 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            357999999999999999999999999987

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.10  E-value=2.4e-06  Score=60.76  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|++|+++|..|++.|++|+|
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~l   29 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGV   29 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEE
Confidence            5899999999999999999999999987

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.10  E-value=2.3e-06  Score=63.23  Aligned_cols=29  Identities=38%  Similarity=0.555  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc------CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE------AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~------g~~v~v   80 (81)
                      .++|+|||||+||+++|+.|++.      |++|+|
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~v   69 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCL   69 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEE
Confidence            47999999999999999999999      999987

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.10  E-value=2.1e-06  Score=60.02  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhH---cCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNK---EAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~---~g~~v~v   80 (81)
                      ++|+|||||++|+++|.+|++   .|++|+|
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~v   32 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKV   32 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEE
Confidence            579999999999999999999   8999987

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.10  E-value=1.9e-06  Score=62.14  Aligned_cols=29  Identities=31%  Similarity=0.590  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+||||||+|+++|..|++.|++|+|
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~l   36 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVL   36 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            37999999999999999999999999987

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=2.6e-06  Score=60.87  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||++|+++|..|++.|++|+|
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~l   33 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVL   33 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999999999987

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=2.3e-06  Score=61.40  Aligned_cols=29  Identities=17%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~l   39 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLL   39 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEE
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEE
Confidence            47899999999999999999999999987

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.09  E-value=2e-06  Score=62.36  Aligned_cols=29  Identities=24%  Similarity=0.232  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH------------cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK------------EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~------------~g~~v~v   80 (81)
                      .++|+|||||+||+++|..|++            .|++|+|
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~l   47 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITL   47 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEE
Confidence            4689999999999999999999            9999987

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.08  E-value=2.6e-06  Score=62.69  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|+.|+++|++|+|
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~L   46 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGL   46 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47999999999999999999999999987

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.08  E-value=2.6e-06  Score=60.86  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~l   34 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVC   34 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999987

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.08  E-value=3.2e-06  Score=61.05  Aligned_cols=28  Identities=18%  Similarity=0.458  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||||++|+++|..|++.|++|+|
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~l   30 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVAL   30 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            6899999999999999999999999987

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.07  E-value=2.3e-06  Score=61.12  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ++|+|||||++|+++|..|+++  |++|+|
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtv   33 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTM   33 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEE
Confidence            6899999999999999999999  899887

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.07  E-value=2.3e-06  Score=62.29  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             CCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         47 PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        47 ~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |....+++|+|||||+||+++|..|++++++|+|
T Consensus        37 p~~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtL   70 (502)
T 4g6h_A           37 PQHSDKPNVLILGSGWGAISFLKHIDTKKYNVSI   70 (502)
T ss_dssp             CCSCSSCEEEEECSSHHHHHHHHHSCTTTCEEEE
T ss_pred             CCCCCCCCEEEECCcHHHHHHHHHhhhCCCcEEE
Confidence            3344567999999999999999999999999987

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.06  E-value=3.4e-06  Score=60.82  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||+|++|+++|+.|+++|++|+|
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~v   27 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTL   27 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            589999999999999999999999987

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.06  E-value=3e-06  Score=63.12  Aligned_cols=29  Identities=41%  Similarity=0.486  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      ..+|+||||||+|+++|+.|++ .|++|+|
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~v   61 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCI   61 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEE
Confidence            4689999999999999999999 9999987

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.06  E-value=2.7e-06  Score=60.66  Aligned_cols=29  Identities=10%  Similarity=0.201  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~l   32 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCAL   32 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999987

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.05  E-value=2.9e-06  Score=61.34  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++ .|++|+|
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~l   36 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAV   36 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEE
Confidence            4789999999999999999999 9999987

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.05  E-value=4.4e-06  Score=60.32  Aligned_cols=29  Identities=38%  Similarity=0.645  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++| ++|+|
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v   38 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHL   38 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEE
Confidence            578999999999999999999999 78876

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.05  E-value=3.6e-06  Score=63.69  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||+||+++|+.|+++|.+|+|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlL   56 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLL   56 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEE
Confidence            357999999999999999999999999987

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.05  E-value=3.4e-06  Score=59.30  Aligned_cols=28  Identities=39%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|++|+++|+.|+++|++|+|
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v   31 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHI   31 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            5899999999999999999999999987

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.05  E-value=3e-06  Score=60.24  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ++|+|||||+||+++|..|+++  |++|+|
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~v   32 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISL   32 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEE
Confidence            5899999999999999999999  888886

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.05  E-value=3.5e-06  Score=59.81  Aligned_cols=29  Identities=31%  Similarity=0.473  Sum_probs=26.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .++|+|||||+||+++|..|++.  |++|+|
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~v   33 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKV   33 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEE
Confidence            36899999999999999999998  778876

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.05  E-value=4.1e-06  Score=61.74  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~L   60 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGL   60 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            47899999999999999999999999987

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.04  E-value=4e-06  Score=61.00  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|+||+.+|++|+++|++|+|
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~l   29 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRL   29 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEE
Confidence            5799999999999999999999999987

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.04  E-value=3.4e-06  Score=60.49  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~l   34 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAI   34 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999987

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.04  E-value=4.2e-06  Score=58.93  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=25.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCC--eee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGT--ELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~--v~v   80 (81)
                      ++|+|||+|+||+++|..|+++|++  |+|
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~l   32 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISL   32 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEE
Confidence            5899999999999999999999998  665

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.04  E-value=4.2e-06  Score=63.22  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||+||+++|+.|++.|.+|+|
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlL   55 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAM   55 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            357999999999999999999999999987

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.03  E-value=4e-06  Score=63.35  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||||+||+++|+.|+++|.+|+|
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlL   49 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLL   49 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            457999999999999999999999999987

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.02  E-value=4.6e-06  Score=59.87  Aligned_cols=28  Identities=25%  Similarity=0.595  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhH---cCCC---eee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNK---EAGT---ELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~---~g~~---v~v   80 (81)
                      ++|+|||||++|+++|..|++   .|++   |+|
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v   36 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVC   36 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEE
Confidence            689999999999999999999   9999   876

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.02  E-value=3.9e-06  Score=60.00  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|++.|++|+|
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~l   34 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLA   34 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999987

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.02  E-value=3.7e-06  Score=60.98  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=25.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ++|+|||||+||+++|..|+++  |++|+|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~l   31 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIM   31 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEE
Confidence            5899999999999999999999  788876

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.01  E-value=4.2e-06  Score=61.02  Aligned_cols=29  Identities=31%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~i   44 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHV   44 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEE
Confidence            46999999999999999999999999887

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.01  E-value=2.9e-06  Score=60.02  Aligned_cols=29  Identities=31%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-----CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-----GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-----~~v~v   80 (81)
                      .++|+|||+|++|+++|..|++.|     ++|+|
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~l   63 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLF   63 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEE
Confidence            468999999999999999999999     88876

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.01  E-value=4.6e-06  Score=61.81  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||+||+++|+.|+++|++|+|
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~v   35 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCAL   35 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.00  E-value=4.7e-06  Score=62.39  Aligned_cols=29  Identities=28%  Similarity=0.343  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|+||+++|+.|+++|++|+|
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~v   46 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTAC   46 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence            46999999999999999999999999987

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.99  E-value=5.4e-06  Score=63.15  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..+|+|||||++|+++|++|+++|+ +|+|
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~v   33 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITV   33 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEE
Confidence            4689999999999999999999998 8887

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.99  E-value=3.2e-06  Score=60.86  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=26.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      ++|+|||||++|+++|..|++.   |++|+|
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~l   33 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTV   33 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEE
Confidence            6899999999999999999999   999887

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.99  E-value=4.7e-06  Score=58.65  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++.||+|||||+||+++|..|++.+++|+|
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itl   37 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITM   37 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEE
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEE
Confidence            4557999999999999999999888999887

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.98  E-value=5.5e-06  Score=58.71  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=24.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      ++|+|||||+||+++|..|++.+  ++|+|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~Vtl   32 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITL   32 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEE
Confidence            68999999999999999999987  56665

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.97  E-value=7e-06  Score=58.36  Aligned_cols=29  Identities=14%  Similarity=0.130  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|++|+|
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~   34 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLH   34 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.96  E-value=3.2e-06  Score=64.56  Aligned_cols=30  Identities=33%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC--------CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA--------GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g--------~~v~v   80 (81)
                      ..++|+|||+|++||++|++|+++|        ++|+|
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v   92 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQI   92 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEE
Confidence            3478999999999999999999999        88876

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.96  E-value=5.6e-06  Score=62.35  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||||.||+++|+.|+++|++|+|
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~v   33 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIV   33 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEE
Confidence            36899999999999999999999999987

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.96  E-value=7.5e-06  Score=57.68  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC--eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT--ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~--v~v   80 (81)
                      ..++|+|||+|++|+++|..|+++|++  |+|
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~l   37 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITV   37 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEE
Confidence            357899999999999999999999985  665

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.95  E-value=6.4e-06  Score=59.32  Aligned_cols=30  Identities=33%  Similarity=0.513  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      ..++|+|||+|++|+.+|..|+++|  ++|+|
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~v   36 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDI   36 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEE
Confidence            3579999999999999999999999  88876

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.95  E-value=5.5e-06  Score=60.94  Aligned_cols=29  Identities=31%  Similarity=0.405  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~i   49 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRA   49 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999887

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.95  E-value=6.8e-06  Score=61.66  Aligned_cols=29  Identities=41%  Similarity=0.440  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-----cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-----EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-----~g~~v~v   80 (81)
                      ..+|+||||||+|+++|..|++     .|++|+|
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~v   41 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRI   41 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEE
Confidence            4689999999999999999999     9999987

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.94  E-value=7.9e-06  Score=60.05  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++.|++|+|
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~i   37 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLG   37 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999886

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.94  E-value=5e-06  Score=58.89  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH---cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK---EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~---~g~~v~v   80 (81)
                      .++|+|||||++|+++|..|++   .|++|+|
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtl   35 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTL   35 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEE
Confidence            3689999999999999999999   8999987

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.94  E-value=7.3e-06  Score=60.93  Aligned_cols=29  Identities=31%  Similarity=0.412  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      ..+|+|||+|+||+++|+.|+++|  ++|+|
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~v   35 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIAL   35 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEE
Confidence            368999999999999999999999  99887

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.93  E-value=6.2e-06  Score=60.48  Aligned_cols=28  Identities=32%  Similarity=0.508  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|+||+++|+.|++ |++|+|
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~v   35 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIV   35 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEE
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEE
Confidence            4689999999999999999999 999987

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.93  E-value=6.8e-06  Score=58.33  Aligned_cols=28  Identities=25%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ++|+|||||++|+++|..|++.  |++|+|
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~l   30 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTA   30 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEE
Confidence            4799999999999999999999  999886

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.92  E-value=8.3e-06  Score=57.88  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|+  +|+|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~l   34 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   34 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEE
Confidence            4789999999999999999999998  5665

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.92  E-value=8.7e-06  Score=56.60  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .++|+|||||+||+++|..|+++|++
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~   29 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGE   29 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSS
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCC
Confidence            37899999999999999999999965

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.92  E-value=8.4e-06  Score=57.99  Aligned_cols=29  Identities=41%  Similarity=0.643  Sum_probs=26.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .++|+|||+|++|+++|+.|+++|+ +|+|
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~   33 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLI   33 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEE
Confidence            4689999999999999999999998 7876

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.92  E-value=7e-06  Score=61.29  Aligned_cols=29  Identities=34%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|.+|++.|++|+|
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~l   74 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAM   74 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999987

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.91  E-value=6.9e-06  Score=58.53  Aligned_cols=28  Identities=25%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCC--eee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGT--ELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~--v~v   80 (81)
                      +||+|||||+||+++|..|++.|++  |+|
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~l   30 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIII   30 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEE
Confidence            4799999999999999999999964  554

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.91  E-value=6e-06  Score=59.40  Aligned_cols=29  Identities=41%  Similarity=0.362  Sum_probs=26.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-c------CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-E------AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~------g~~v~v   80 (81)
                      .++|+||||||||+++|..|++ +      |++|+|
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~l   38 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDM   38 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEE
Confidence            4689999999999999999999 7      898876

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.90  E-value=7.1e-06  Score=57.21  Aligned_cols=29  Identities=41%  Similarity=0.676  Sum_probs=25.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.+++|||+|+||+++|..|++.| +|+|
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~l   35 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTV   35 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEE
Confidence            4578999999999999999999999 8876

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.89  E-value=8.9e-06  Score=57.66  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ++|+|||+|++|+++|..|++.  |++|+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~l   30 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQW   30 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEE
Confidence            3799999999999999999998  888886

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.88  E-value=8.3e-06  Score=59.87  Aligned_cols=29  Identities=24%  Similarity=0.344  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHh-HcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLN-KEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~-~~g~~v~v   80 (81)
                      ..+|+|||||++|+++|..|+ +.|++|+|
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~v   37 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVG   37 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEE
Confidence            368999999999999999999 99999886

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.88  E-value=1e-05  Score=61.00  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc------CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE------AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~------g~~v~v   80 (81)
                      ...+|+|||||+||+++|+.|+++      |++|+|
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~v   56 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILL   56 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEE
Confidence            347999999999999999999998      999987

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.87  E-value=9.6e-06  Score=63.14  Aligned_cols=29  Identities=31%  Similarity=0.646  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+||||+++|..|++.|++|+|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~l  156 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVML  156 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            47899999999999999999999999987

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.86  E-value=8.5e-06  Score=58.85  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ..++|+|||+|+||+++|..|+++  |++|+|
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~l   41 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLI   41 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEE
Confidence            357899999999999999999988  778876

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.85  E-value=1.1e-05  Score=60.18  Aligned_cols=30  Identities=30%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHh---H-cCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLN---K-EAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~---~-~g~~v~v   80 (81)
                      ...+|+|||||+||+++|+.|+   + +|.+|+|
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~v   54 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTL   54 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEE
Confidence            3468999999999999999999   6 8999987

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.82  E-value=1.1e-05  Score=58.07  Aligned_cols=29  Identities=17%  Similarity=0.402  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA---GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g---~~v~v   80 (81)
                      .++|+|||+|++|+++|..|+++|   ++|+|
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~l   66 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVV   66 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEE
Confidence            479999999999999999999998   88876

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.80  E-value=1.5e-05  Score=57.14  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .++|+|||+|++|+++|..|++.  |++|+|
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~l   66 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVT   66 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEE
Confidence            36899999999999999999997  888876

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.78  E-value=2e-05  Score=57.35  Aligned_cols=30  Identities=37%  Similarity=0.547  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+.+|..|++.|++|+|
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~Vlv   35 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLL   35 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            457999999999999999999999999987

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.78  E-value=1e-05  Score=58.48  Aligned_cols=28  Identities=43%  Similarity=0.627  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+|++|+++|.+|++. ++|+|
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~v  135 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVAL  135 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEE
Confidence            46899999999999999999999 99887

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.76  E-value=1.8e-05  Score=58.41  Aligned_cols=29  Identities=21%  Similarity=0.520  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+++|||+||+|+++|..+++.|.+|.|
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kVal   70 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLL   70 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            47999999999999999999999999987

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.75  E-value=2e-05  Score=57.58  Aligned_cols=30  Identities=20%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+++|+.|+++|++|+|
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~   48 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILV   48 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            347999999999999999999999999987

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.51  E-value=6.7e-05  Score=53.82  Aligned_cols=29  Identities=28%  Similarity=0.417  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      .++++|||||+||+..|..|++ .|++|+|
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLv   46 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLL   46 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEE
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEE
Confidence            6899999999999999999997 7789987

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.34  E-value=0.0001  Score=53.91  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||.||+.+|..|++ |.+|+|
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~Vlv   53 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLV   53 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEE
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEE
Confidence            4799999999999999999999 999987

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.33  E-value=0.00018  Score=48.18  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|+|
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtl  173 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTI  173 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            47999999999999999999999999987

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.33  E-value=0.00017  Score=52.20  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|++|+|
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~   33 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLM   33 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999886

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.33  E-value=0.00012  Score=53.00  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .-++|+|||+||+||++|..|.+.|..
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~   64 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDP   64 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCT
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCC
Confidence            447899999999999999999987754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.32  E-value=0.00029  Score=43.30  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=28.0

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .....+|+|+|+|..|...|..|.+.|++|++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~v   47 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVV   47 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            34567999999999999999999999998875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.29  E-value=0.00019  Score=51.43  Aligned_cols=30  Identities=33%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||.|.+|+++|..|+++|++|++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~   37 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTV   37 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEE
Confidence            468999999999999999999999999975

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.28  E-value=0.00022  Score=47.39  Aligned_cols=30  Identities=27%  Similarity=0.428  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|..|+..|..|++.|.+|++
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~  180 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVII  180 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeee
Confidence            357999999999999999999999999987

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.28  E-value=0.00022  Score=51.75  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+.+|..|++.|++|.|
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~   39 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQI   39 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            347999999999999999999999999886

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.28  E-value=0.0002  Score=51.10  Aligned_cols=30  Identities=30%  Similarity=0.446  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||.|.+|+++|..|+++|++|++
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~   33 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRV   33 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEE
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEE
Confidence            357899999999999999999999999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.27  E-value=0.00053  Score=41.56  Aligned_cols=31  Identities=16%  Similarity=0.137  Sum_probs=28.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+++|+|.|..|...|..|.+.|++|++
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~v   35 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIPLVV   35 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            3456899999999999999999999999876

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.17  E-value=0.00039  Score=49.16  Aligned_cols=30  Identities=27%  Similarity=0.405  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+.+|..|++.|.+|++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtl  177 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTV  177 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            457999999999999999999999999886

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.17  E-value=0.00038  Score=48.89  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtv  174 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASI  174 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            47899999999999999999999999986

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.13  E-value=0.0004  Score=49.49  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  199 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSV  199 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            57999999999999999999999999886

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.11  E-value=0.0003  Score=52.22  Aligned_cols=30  Identities=33%  Similarity=0.403  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ..++++|||||.||+.+|..|++.| .+|+|
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLl   35 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLI   35 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEE
Confidence            3489999999999999999999998 68876

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.09  E-value=0.00059  Score=48.36  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~l  195 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIV  195 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47899999999999999999999999876

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.04  E-value=0.00061  Score=48.26  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  198 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTI  198 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            57999999999999999999999999886

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.03  E-value=0.00061  Score=48.59  Aligned_cols=29  Identities=17%  Similarity=0.386  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++.|.+|+|
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  197 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTL  197 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            47999999999999999999999999986

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.03  E-value=0.00094  Score=40.09  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|+|+|..|...|..|.++|++|++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~   34 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLA   34 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999999999876

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.02  E-value=0.00044  Score=50.69  Aligned_cols=29  Identities=24%  Similarity=0.396  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      .++++|||+|++|+.+|..|++. |++|+|
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~   42 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVAL   42 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEE
Confidence            47999999999999999999998 899876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.99  E-value=0.00088  Score=39.56  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|+|+|..|...|..|.+.|++|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~   32 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVL   32 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            5799999999999999999999998875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.98  E-value=0.00072  Score=48.10  Aligned_cols=29  Identities=21%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  211 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTV  211 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            57999999999999999999999999986

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.97  E-value=0.00035  Score=51.27  Aligned_cols=31  Identities=23%  Similarity=0.485  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|.+|+..|..|++.|.+|++
T Consensus       176 ~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv  206 (540)
T 3gwf_A          176 LAGRRVGVIGTGSTGQQVITSLAPEVEHLTV  206 (540)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             cccceEEEECCCchHHHHHHHHHhhCCEEEE
Confidence            4568999999999999999999999999876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.97  E-value=0.00078  Score=38.68  Aligned_cols=29  Identities=21%  Similarity=0.262  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      .++|+|+|+|..|...+..|.+.| ++|++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~   34 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTV   34 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence            468999999999999999999999 87764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.96  E-value=0.00089  Score=46.38  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  173 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDV  173 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            57999999999999999999999999886

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.95  E-value=0.00059  Score=50.51  Aligned_cols=30  Identities=27%  Similarity=0.343  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      ..++++|||+|++|+++|..|++ .|++|+|
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~   53 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLV   53 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEE
Confidence            34799999999999999999999 8999886

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.95  E-value=0.00091  Score=45.33  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+..|..|++.|.+|++
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~l  194 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIAL  194 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEE
Confidence            356999999999999999999999999876

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.93  E-value=0.0008  Score=48.16  Aligned_cols=31  Identities=32%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|.+|+..|..|++.|.+|++
T Consensus       195 ~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~l  225 (464)
T 2xve_A          195 FKDKTVLLVGSSYSAEDIGSQCYKYGAKKLI  225 (464)
T ss_dssp             GTTSEEEEECCSTTHHHHHHHHHHTTCSEEE
T ss_pred             cCCCEEEEEcCCCCHHHHHHHHHHhCCeEEE
Confidence            3568999999999999999999999999876

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.93  E-value=0.00066  Score=47.18  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|++|+..|..|++.|.+|++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  171 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKL  171 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            37899999999999999999999999886

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.93  E-value=0.00095  Score=46.86  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  173 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSL  173 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            57999999999999999999999999886

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.92  E-value=0.0013  Score=38.94  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=26.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|+|+|..|...|..|.+.|++|++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~   34 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLA   34 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46799999999999999999999998875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.91  E-value=0.00063  Score=50.64  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      ..++++|||||.||+.+|..|++. +++|+|
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLl   48 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLV   48 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEE
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEE
Confidence            458999999999999999999975 788886

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.88  E-value=0.0011  Score=47.54  Aligned_cols=30  Identities=27%  Similarity=0.453  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtl  222 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVL  222 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            357999999999999999999999999886

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.88  E-value=0.0011  Score=47.07  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  195 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHL  195 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            47999999999999999999999999886

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.88  E-value=0.0016  Score=39.77  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|+|..|...|..|.+.|++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~v   31 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTV   31 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            46899999999999999999999999876

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.86  E-value=0.001  Score=47.00  Aligned_cols=31  Identities=23%  Similarity=0.219  Sum_probs=28.1

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ...++|+|||+|.+|+..|..|++.|.+ |++
T Consensus       210 ~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l  241 (447)
T 2gv8_A          210 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQ  241 (447)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred             cCCCEEEEEccCcCHHHHHHHHHHHhCCcEEE
Confidence            3568999999999999999999999998 775

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.86  E-value=0.0018  Score=40.53  Aligned_cols=30  Identities=30%  Similarity=0.365  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      ...+|+|+|.|..|...|..|.+. |++|++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~v   68 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLG   68 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEE
Confidence            456899999999999999999999 999876

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.85  E-value=0.0013  Score=46.98  Aligned_cols=29  Identities=31%  Similarity=0.399  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtl  194 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTV  194 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            47999999999999999999999999886

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.83  E-value=0.00056  Score=50.71  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=26.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      .++++|||+|.||+..|..|++ .|++|+|
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~Vll   31 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLV   31 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEE
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEE
Confidence            3689999999999999999998 7899886

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.82  E-value=0.0012  Score=43.86  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+..|..|++.|.+|++
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  171 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYL  171 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            358999999999999999999999998876

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.80  E-value=0.0016  Score=47.79  Aligned_cols=29  Identities=21%  Similarity=0.233  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|..|+.+|..|++.|.+|++
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  314 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTV  314 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            46899999999999999999999999886

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.79  E-value=0.00049  Score=50.54  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=28.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|++|+..|..|++.+.+|++
T Consensus       183 ~~~krV~VIG~G~tgve~a~~la~~~~~Vtv  213 (545)
T 3uox_A          183 FTGKRVGVIGTGATGVQIIPIAAETAKELYV  213 (545)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHTTTBSEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHHhhCCEEEE
Confidence            4568999999999999999999999998876

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.78  E-value=0.0015  Score=45.63  Aligned_cols=29  Identities=28%  Similarity=0.200  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|..|...|..+++.|++|++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l   34 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKL   34 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEE
Confidence            46899999999999999999999999987

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.77  E-value=0.0012  Score=47.17  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtl  213 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDV  213 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            57999999999999999999999999886

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.76  E-value=0.0011  Score=47.38  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+.+|..|++.|.+|++
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  214 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRM  214 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            457999999999999999999999999876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.75  E-value=0.0016  Score=46.08  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtl  177 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTL  177 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            57999999999999999999999999876

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.74  E-value=0.0019  Score=42.97  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-.+++|+|||+|..|...+..|.+.|.+|+|
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtV   59 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITV   59 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            34678999999999999999999999999987

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.74  E-value=0.0017  Score=46.70  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtl  202 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKV  202 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            357999999999999999999999999886

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.73  E-value=0.0015  Score=46.33  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  199 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTI  199 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            57999999999999999999999999886

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.73  E-value=0.0015  Score=46.44  Aligned_cols=29  Identities=14%  Similarity=0.272  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  206 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTA  206 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            47999999999999999999999999886

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.73  E-value=0.0014  Score=45.07  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLG-AAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~-~A~~L~~~g~~v~v   80 (81)
                      ..++|.+||.|.+|++ +|..|.++|++|++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~   33 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSG   33 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEE
Confidence            3478999999999997 78999999999975

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.72  E-value=0.0019  Score=47.68  Aligned_cols=30  Identities=20%  Similarity=0.142  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|||||+.|+..|..+++.|.+|+|
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTi  251 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTV  251 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            347899999999999999999999999987

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.72  E-value=0.0013  Score=43.60  Aligned_cols=30  Identities=37%  Similarity=0.546  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+..|..|++.|.+|++
T Consensus       143 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  172 (310)
T 1fl2_A          143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTL  172 (310)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCEEEE
Confidence            357999999999999999999999988876

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.71  E-value=0.0018  Score=45.43  Aligned_cols=29  Identities=28%  Similarity=0.291  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtv  171 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTI  171 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            57999999999999999999999999876

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.69  E-value=0.002  Score=45.58  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  176 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTM  176 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            457999999999999999999999999876

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.69  E-value=0.0015  Score=43.67  Aligned_cols=30  Identities=30%  Similarity=0.457  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+..|..|++.|.+|++
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  180 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTKFADEVTV  180 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            357999999999999999999999999876

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.68  E-value=0.0013  Score=46.59  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  205 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTV  205 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            57999999999999999999999999886

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.67  E-value=0.0016  Score=43.24  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+..|..|++.|.+|++
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtl  173 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHL  173 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            457999999999999999999999999876

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.66  E-value=0.0016  Score=43.52  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|.+|+..|..|++.|.+|++
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~l  187 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYI  187 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEE
Confidence            457999999999999999999999999876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0021  Score=46.00  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  213 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHL  213 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            47999999999999999999999999886

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.61  E-value=0.0019  Score=43.56  Aligned_cols=30  Identities=23%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+..|..|++.|.+|++
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l  183 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTL  183 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEE
Confidence            458999999999999999999999999876

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.61  E-value=0.0022  Score=45.86  Aligned_cols=30  Identities=17%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  226 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTV  226 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            357999999999999999999999999886

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.59  E-value=0.0019  Score=46.50  Aligned_cols=29  Identities=28%  Similarity=0.360  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  204 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYI  204 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEE
Confidence            57999999999999999999999999886

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.58  E-value=0.002  Score=42.83  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++++|||+|++|+..|..|++.|.+|++
T Consensus       171 ~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~  201 (338)
T 3itj_A          171 FRNKPLAVIGGGDSACEEAQFLTKYGSKVFM  201 (338)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            3467999999999999999999999998876

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.57  E-value=0.0023  Score=45.44  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  204 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTV  204 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            57999999999999999999999999876

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.57  E-value=0.0025  Score=46.08  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  179 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTL  179 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence            56999999999999999999999999876

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.56  E-value=0.003  Score=45.78  Aligned_cols=29  Identities=21%  Similarity=0.098  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtl  238 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTV  238 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            46799999999999999999999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.55  E-value=0.0031  Score=45.13  Aligned_cols=30  Identities=20%  Similarity=0.140  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  213 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTV  213 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            346899999999999999999999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.55  E-value=0.0024  Score=45.46  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  215 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSL  215 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            47999999999999999999999999886

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.55  E-value=0.0017  Score=44.48  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|||+|..|...+..|.+.|.+|+|
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtV   41 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTL   41 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCEEEE
Confidence            3568999999999999999999999999987

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.55  E-value=0.0023  Score=45.40  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  175 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTL  175 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCccee
Confidence            46899999999999999999999999986

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.54  E-value=0.0031  Score=42.62  Aligned_cols=29  Identities=28%  Similarity=0.417  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|.|||+|..|...|..|++.|++|++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~   43 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVL   43 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999876

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.54  E-value=0.0015  Score=45.94  Aligned_cols=30  Identities=30%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ..++|+|||+|.+|+..|..|++.  |.+|++
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~  257 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADM  257 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEE
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEE
Confidence            467999999999999999999999  888775

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.53  E-value=0.0019  Score=47.38  Aligned_cols=31  Identities=29%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|.+|+..|..|++.+.+|++
T Consensus       189 ~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv  219 (549)
T 4ap3_A          189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFV  219 (549)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             cCCCEEEEECCCchHHHHHHHHHhhCCEEEE
Confidence            3568999999999999999999999999876

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.53  E-value=0.0026  Score=42.80  Aligned_cols=28  Identities=21%  Similarity=0.189  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|+++|++|++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l   32 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTA   32 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            6899999999999999999999999876

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.52  E-value=0.0026  Score=45.17  Aligned_cols=29  Identities=17%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  202 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTV  202 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEE
Confidence            57999999999999999999999999886

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.50  E-value=0.0019  Score=43.26  Aligned_cols=30  Identities=37%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|.+|+..|..|++.|.+|++
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~  180 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTARRITL  180 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            467999999999999999999999998876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.50  E-value=0.0028  Score=46.07  Aligned_cols=34  Identities=15%  Similarity=0.084  Sum_probs=29.3

Q ss_pred             CCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         47 PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        47 ~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |......+|.|||.|..|+.+|..|+++|++|+.
T Consensus        16 p~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g   49 (444)
T 3vtf_A           16 PRGSHMASLSVLGLGYVGVVHAVGFALLGHRVVG   49 (444)
T ss_dssp             CTTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEE
Confidence            3444567999999999999999999999999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.49  E-value=0.0024  Score=45.15  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  177 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQNYNVNL  177 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcCCEEEE
Confidence            357899999999999999999999999876

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.46  E-value=0.0023  Score=42.71  Aligned_cols=30  Identities=33%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+..|..|++.|.+|++
T Consensus       154 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~  183 (319)
T 3cty_A          154 KGKRVVTIGGGNSGAIAAISMSEYVKNVTI  183 (319)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHTTTBSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCcEEE
Confidence            357899999999999999999999988875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.46  E-value=0.0034  Score=44.65  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  200 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHI  200 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            357999999999999999999999999876

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.43  E-value=0.003  Score=43.17  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|..|...|..|++.|++|++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l   47 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVIL   47 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            457899999999999999999999999876

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.43  E-value=0.0034  Score=43.84  Aligned_cols=29  Identities=31%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtv  180 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTL  180 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            67999999999999999999999999876

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.42  E-value=0.0033  Score=43.83  Aligned_cols=29  Identities=24%  Similarity=0.269  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtv  170 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDV  170 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            57899999999999999999999999876

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.39  E-value=0.0043  Score=44.55  Aligned_cols=31  Identities=19%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ..+++|+|||+|.+|+.+|..+.+.|.+ |++
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vti  293 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKC  293 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEE
Confidence            4578999999999999999999999985 765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.38  E-value=0.0041  Score=44.16  Aligned_cols=30  Identities=17%  Similarity=0.299  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  208 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTV  208 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            357999999999999999999999999876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.34  E-value=0.0036  Score=41.73  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|.+|+..|..|++.| +|++
T Consensus       161 ~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~  190 (357)
T 4a9w_A          161 FAGMRVAIIGGGNSGAQILAEVSTVA-ETTW  190 (357)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTS-EEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhhC-CEEE
Confidence            34689999999999999999999998 4654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.33  E-value=0.0045  Score=44.17  Aligned_cols=30  Identities=27%  Similarity=0.251  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  215 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTV  215 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            347899999999999999999999999886

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.30  E-value=0.0033  Score=45.62  Aligned_cols=30  Identities=37%  Similarity=0.546  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|.+|+.+|..|++.|.+|++
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtl  383 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTL  383 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            468999999999999999999999998876

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.29  E-value=0.004  Score=42.50  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|..|...|..|++.|++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~   30 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSV   30 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            4799999999999999999999999876

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.28  E-value=0.0048  Score=40.64  Aligned_cols=31  Identities=29%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|.|||.|..|...|..|+++|++|++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~   47 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTI   47 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            3467999999999999999999999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.26  E-value=0.0029  Score=41.36  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=26.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+..|..|++.| +|++
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~  168 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG-ETTF  168 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS-EEEE
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC-cEEE
Confidence            4679999999999999999999998 8765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.25  E-value=0.0049  Score=43.63  Aligned_cols=30  Identities=33%  Similarity=0.511  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|..|+..|..|++.|.+|++
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl  175 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHV  175 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            457999999999999999999999999886

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.25  E-value=0.004  Score=45.28  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-+|.|||.|..|+..|..|+++|++|++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~   36 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFC   36 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEE
Confidence            35899999999999999999999999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.24  E-value=0.005  Score=42.24  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|..|...|..|++.|++|++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~   31 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINV   31 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            5799999999999999999999999876

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.23  E-value=0.0033  Score=42.71  Aligned_cols=30  Identities=40%  Similarity=0.517  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+..|..|++.|.+|++
T Consensus       162 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~l  191 (360)
T 3ab1_A          162 KGKRVVIVGGGDSALDWTVGLIKNAASVTL  191 (360)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            467999999999999999999999998876

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.22  E-value=0.005  Score=40.57  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~  182 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYL  182 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEE
Confidence            457999999999999999999999998876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.21  E-value=0.0048  Score=40.69  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=25.3

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|++.|++|++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~   28 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQG   28 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEE
Confidence            699999999999999999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.20  E-value=0.0051  Score=44.89  Aligned_cols=30  Identities=13%  Similarity=0.293  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  215 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGIEVTL  215 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            357999999999999999999999999876

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.19  E-value=0.0044  Score=39.86  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+|..|...|..|.++|++|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~v   28 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVI   28 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            699999999999999999999999876

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.18  E-value=0.006  Score=44.12  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=26.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ..+|+|+|||+|.+|...+..|++.  +.+|++
T Consensus       244 ~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~  276 (501)
T 4b63_A          244 SKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTL  276 (501)
T ss_dssp             TSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEE
T ss_pred             cCCcEEEEECCcHHHHHHHHHHHhcCCCceEEE
Confidence            4678999999999999999999986  555553

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.17  E-value=0.0044  Score=42.13  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|..|.+.|..|++.|++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~   30 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHF   30 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999876

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.16  E-value=0.005  Score=44.37  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.   |.+|++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtl  222 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTL  222 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEE
Confidence            47999999999999999999999   999886

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.16  E-value=0.0053  Score=40.89  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=25.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|++.|++|++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~   31 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTL   31 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            4799999999999999999999999875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.14  E-value=0.0049  Score=40.52  Aligned_cols=30  Identities=27%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~  175 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICSKIYL  175 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSSEEEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            457999999999999999999999998875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.13  E-value=0.0069  Score=41.17  Aligned_cols=31  Identities=19%  Similarity=0.161  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|.|||.|..|...|..|++.|++|++
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~   49 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTV   49 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEE
Confidence            3446899999999999999999999999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.11  E-value=0.018  Score=43.87  Aligned_cols=29  Identities=38%  Similarity=0.412  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+|.|||+|..|...|..|+++|++|++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l  340 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVIL  340 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEE
Confidence            46899999999999999999999999986

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.08  E-value=0.008  Score=41.66  Aligned_cols=29  Identities=28%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..+|+|||+|..|...|..|+++|+ +|.+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L   38 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVL   38 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            4689999999999999999999998 7554

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.07  E-value=0.0058  Score=43.89  Aligned_cols=29  Identities=24%  Similarity=0.233  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.   |.+|++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtl  218 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDL  218 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEE
Confidence            47999999999999999999999   999886

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.07  E-value=0.0064  Score=44.33  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-++|.|||+|..|...|..|++.|++|++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l   82 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFL   82 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            346899999999999999999999999986

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.04  E-value=0.0059  Score=44.20  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-++.|||.|..|+..|..|+++||+|++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~   36 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVC   36 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEE
Confidence            35899999999999999999999999975

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.04  E-value=0.0066  Score=41.72  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|+|||..|..+|+.+.+.|++|++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~   29 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVL   29 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            6899999999999999999999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.02  E-value=0.006  Score=43.99  Aligned_cols=28  Identities=25%  Similarity=0.266  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|+..|..|+++|++|++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~   30 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRC   30 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEE
Confidence            4799999999999999999999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.02  E-value=0.0089  Score=42.85  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl  210 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTV  210 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            57999999999999999999999999876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.00  E-value=0.007  Score=43.81  Aligned_cols=28  Identities=14%  Similarity=0.278  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||+|..|+..|..|++.|.+|++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtl  242 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVM  242 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            8999999999999999999999999876

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.98  E-value=0.007  Score=40.81  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|.-|...|..|++.|++|++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~   30 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTL   30 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.96  E-value=0.0083  Score=40.58  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=25.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      .+|+|||+|..|...|..|++.|+  +|++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l   37 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVL   37 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEE
Confidence            589999999999999999999998  7764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.94  E-value=0.0085  Score=38.64  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|.|||+|..|...|..|++.|++|++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~   47 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTY   47 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            346899999999999999999999998875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.94  E-value=0.0082  Score=42.62  Aligned_cols=29  Identities=31%  Similarity=0.291  Sum_probs=27.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~-g~~v~v   80 (81)
                      .++++|||+|++|+..|..|++. |.+|++
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtl  188 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTV  188 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEE
Confidence            57999999999999999999999 999876

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.93  E-value=0.0078  Score=41.33  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|.|||+|..|...|..|+ .|++|++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v   39 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVL   39 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEE
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEE
Confidence            4589999999999999999999 9999986

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.92  E-value=0.0086  Score=40.96  Aligned_cols=29  Identities=17%  Similarity=0.317  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||+|..|...|..|++.|++|++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~   42 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVIL   42 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            36899999999999999999999999876

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.92  E-value=0.0027  Score=38.41  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|..|...|..|.+.|++|++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v   49 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTV   49 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            57899999999999999999999988654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.91  E-value=0.0074  Score=43.54  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|||+|.+|...+..|.+.|.+|+|
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~v   40 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGARLTV   40 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEE
Confidence            3468999999999999999999999999887

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.90  E-value=0.0096  Score=39.89  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|+|-+|..+|..|++.|.+|++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v  147 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTI  147 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            357899999999999999999999988775

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.88  E-value=0.0089  Score=43.13  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-.+|.|||+|..|...|..|+++|++|++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l   65 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVA   65 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            346899999999999999999999999876

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.87  E-value=0.0068  Score=40.14  Aligned_cols=30  Identities=37%  Similarity=0.450  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|++|+..|..|++.|.+|++
T Consensus       153 ~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~  182 (332)
T 3lzw_A          153 AGRRVAILGGGDSAVDWALMLEPIAKEVSI  182 (332)
T ss_dssp             BTCEEEEECSSHHHHHHHHHHTTTBSEEEE
T ss_pred             CCCEEEEECCCHhHHHHHHHHHhhCCeEEE
Confidence            468999999999999999999999988875

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.87  E-value=0.0078  Score=40.66  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|++.|++|++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~   28 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRI   28 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            689999999999999999999999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.85  E-value=0.0099  Score=41.47  Aligned_cols=29  Identities=31%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|+|+|.+|+.++..|...|.+|++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v  195 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQI  195 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            47999999999999999999999997765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.85  E-value=0.012  Score=38.65  Aligned_cols=28  Identities=29%  Similarity=0.359  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|.|+|..|...+..|.++|++|++
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~   31 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTG   31 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            5899999999999999999999999875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.84  E-value=0.0097  Score=42.82  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|+|+|.+|+.+|..|...|.+|++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v  218 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSA  218 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            457999999999999999999999998875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.83  E-value=0.0053  Score=44.54  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=26.7

Q ss_pred             cCCCcEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLG-AAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~-~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||.|-+|++ +|..|.++|++|++
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~   51 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISG   51 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEE
Confidence            44689999999999997 69999999999975

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.83  E-value=0.01  Score=42.04  Aligned_cols=30  Identities=13%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~  198 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTL  198 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            357999999999999999999999999876

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.83  E-value=0.0098  Score=45.07  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|+|+|..|...|..|++.|.+|++
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~   36 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLH   36 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEE
Confidence            58999999999999999999999999986

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.81  E-value=0.01  Score=41.68  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|.+|+.++..+...|.+|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~  200 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMA  200 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            467999999999999999999999988664

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.80  E-value=0.011  Score=39.89  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             ccCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+.++|+|.|| |..|...+..|+++|++|++
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~   48 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRG   48 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEE
Confidence            345679999998 99999999999999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.79  E-value=0.01  Score=42.15  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=26.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|.+|+.+|..+...|.+|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v  200 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRA  200 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            367999999999999999999999987764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.79  E-value=0.0094  Score=40.54  Aligned_cols=28  Identities=29%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|++.|++|++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~   32 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLA   32 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            4899999999999999999999999875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.76  E-value=0.0073  Score=43.04  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+..|..|+++|++|++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~   28 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIG   28 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            689999999999999999999999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.75  E-value=0.013  Score=37.83  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|.|||+|..|...|..|++.|++|++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~   56 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVV   56 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence            346899999999999999999999998865

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.75  E-value=0.01  Score=42.41  Aligned_cols=30  Identities=17%  Similarity=0.204  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|+|+|..|+.+|..|...|.+|++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v  212 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTG  212 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEE
Confidence            457999999999999999999999998875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.71  E-value=0.013  Score=41.84  Aligned_cols=30  Identities=23%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtl  219 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTL  219 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            357999999999999999999999998876

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.70  E-value=0.01  Score=41.54  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||+|.-|.+.|..|+++|++|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l   57 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRL   57 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEE
Confidence            35899999999999999999999999876

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.69  E-value=0.012  Score=40.12  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=25.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|+ +|++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l   33 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVL   33 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence            589999999999999999999998 7654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.65  E-value=0.013  Score=39.09  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|...|..|+++|++|++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~   29 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTI   29 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.62  E-value=0.014  Score=40.81  Aligned_cols=30  Identities=27%  Similarity=0.273  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|+|+|..|..+|..|+..|.+|++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~  194 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTI  194 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            457999999999999999999999998765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.61  E-value=0.012  Score=42.38  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH----cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK----EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~----~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++    .|.+|++
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~  212 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQ  212 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEE
Confidence            5799999999999999999987    4666664

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.61  E-value=0.013  Score=42.64  Aligned_cols=28  Identities=32%  Similarity=0.515  Sum_probs=26.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||+|..|...|..|+++|++|++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l   33 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLL   33 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            5899999999999999999999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.59  E-value=0.0053  Score=45.78  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=25.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ..++|+|||+|..|+..|.+|++.|.+|+
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            45799999999999999999999997654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.59  E-value=0.014  Score=39.68  Aligned_cols=29  Identities=24%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|+|+|-+|.+++..|++.|.+++|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V  146 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSV  146 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            68999999999999999999999977765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.58  E-value=0.015  Score=37.22  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=26.9

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|.|+ |..|...+..|+++|++|++
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~   50 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVA   50 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEE
Confidence            34679999998 99999999999999999875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.58  E-value=0.013  Score=39.99  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|+|+|.+|..+|..|++.|. +|+|
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v  170 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDM  170 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEE
Confidence            35789999999999999999999998 6765

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.57  E-value=0.015  Score=40.23  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=25.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+|+|||+|..|...|..|+++|+ +|.+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L   43 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYM   43 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            589999999999999999999999 7554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.55  E-value=0.0098  Score=39.92  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=27.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|+|-+|...|..|++.|.+|+|
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v  147 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVL  147 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            357899999999999999999999988776

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.53  E-value=0.015  Score=39.21  Aligned_cols=29  Identities=31%  Similarity=0.357  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|...|..|++.|++|++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~   35 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWG   35 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999999876

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.50  E-value=0.015  Score=38.13  Aligned_cols=28  Identities=11%  Similarity=0.018  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|.|+|..|...+..|.++|++|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~   33 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIG   33 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            6899999999999999999999999875

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.50  E-value=0.01  Score=43.39  Aligned_cols=28  Identities=29%  Similarity=0.320  Sum_probs=26.3

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc-CC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE-AG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~-g~-~v~v   80 (81)
                      .+|.|||.|..|+..|..|+++ |+ +|++
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~   48 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLG   48 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEE
Confidence            5899999999999999999999 99 8875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.49  E-value=0.016  Score=40.70  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|+|..|..+|..+...|.+|++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~  196 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTV  196 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            467999999999999999999999998764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.49  E-value=0.013  Score=41.95  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHh
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLN   72 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~   72 (81)
                      ..++++|||+|..|+.+|..|+
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~  165 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILL  165 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHh
Confidence            4689999999999999999999

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.49  E-value=0.011  Score=44.76  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVG--SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG--~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||  +|..|+..|..|++.|.+|++
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtl  558 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTI  558 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEE
Confidence            357999998  999999999999999999886

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.45  E-value=0.022  Score=38.34  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=28.8

Q ss_pred             CCccCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         47 PTLRTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        47 ~~~~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.....++|+|.|+ |..|...+..|+++|++|++
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~   49 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILV   49 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            33445678999998 99999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.45  E-value=0.015  Score=39.69  Aligned_cols=27  Identities=33%  Similarity=0.422  Sum_probs=24.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      +|+|||+|..|...|..|+++|+  +|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L   30 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVL   30 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEE
Confidence            79999999999999999999998  6654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.42  E-value=0.015  Score=39.65  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|.|||.|..|...|..|++.|++|++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~   59 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQV   59 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEE
Confidence            346899999999999999999999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.41  E-value=0.017  Score=45.29  Aligned_cols=29  Identities=14%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .++|+|||+|..|+.+|..|++.|. +|++
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtv  361 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFL  361 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEE
Confidence            4699999999999999999999996 6775

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.38  E-value=0.014  Score=38.94  Aligned_cols=28  Identities=18%  Similarity=0.138  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|...|..|+++|++|++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~   29 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTV   29 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999876

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=95.35  E-value=0.018  Score=44.20  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=28.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      ..-++|.|||+|..|...|..+++.|++|+++
T Consensus       314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~  345 (742)
T 3zwc_A          314 QPVSSVGVLGLGTMGRGIAISFARVGISVVAV  345 (742)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccccEEEEEcccHHHHHHHHHHHhCCCchhcc
Confidence            34579999999999999999999999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.35  E-value=0.015  Score=39.59  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|+|+|-+|.++|..|++.|. +|+|
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v  146 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTV  146 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            45789999999999999999999998 6765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.29  E-value=0.011  Score=41.29  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=24.8

Q ss_pred             cEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      +|.|||+|..|...|..|++ .|++|++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~   31 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRV   31 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999998 5999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.28  E-value=0.018  Score=38.23  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ...+|+|||+|-.|..+|..|++.|. ++++
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~l   60 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTL   60 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEE
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEE
Confidence            34789999999999999999999997 4443

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.27  E-value=0.015  Score=42.17  Aligned_cols=31  Identities=29%  Similarity=0.648  Sum_probs=28.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|.+|+..|..|++.|.+|++
T Consensus       184 ~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv  214 (542)
T 1w4x_A          184 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFV  214 (542)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             cCCCEEEEECCCccHHHHHHHHhhcCceEEE
Confidence            3578999999999999999999999988875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.26  E-value=0.019  Score=38.02  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=25.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|.|| |..|...+..|.++||+|++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~   29 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTL   29 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            5999998 99999999999999999875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.25  E-value=0.022  Score=39.62  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|+|..|...+..+.+.|++|++
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~   42 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAV   42 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            467999999999999999999999999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.25  E-value=0.022  Score=39.48  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=26.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+++++|+|+|-+|.++|..|++.|. +|+|
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i  183 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISI  183 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999998 5665

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.24  E-value=0.018  Score=36.52  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|+| +|..|...|..|+++|++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~   29 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVV   29 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEE
Confidence            689999 999999999999999998865

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.22  E-value=0.012  Score=45.89  Aligned_cols=29  Identities=17%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|+|
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtv  312 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAV  312 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEE
Confidence            47899999999999999999999999876

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.21  E-value=0.024  Score=38.29  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++.|||.|..|...|..|...|.+|++
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~  183 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKV  183 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEE
Confidence            468999999999999999999999998765

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.20  E-value=0.021  Score=37.48  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=25.2

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|...|..|++.|++|++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~   28 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVT   28 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEE
Confidence            689999999999999999999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.18  E-value=0.024  Score=39.21  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..+|.|||+|..|...|+.|+++|+ ++++
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l   37 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVL   37 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            4689999999999999999999999 6654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.17  E-value=0.023  Score=40.15  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=27.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|+|..|..+|..|.+.|.+|++
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv  201 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVV  201 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEE
Confidence            468999999999999999999999999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.17  E-value=0.025  Score=40.39  Aligned_cols=29  Identities=24%  Similarity=0.271  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|+|.|..|...|..|.+.|++|++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvv   32 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVV   32 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            45799999999999999999999999886

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.17  E-value=0.016  Score=39.14  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|...|..|+++|++|++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~   43 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTV   43 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            35899999999999999999999999876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.17  E-value=0.025  Score=38.26  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.++++.|||.|..|...|..|...|.+|++
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~  185 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKV  185 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEE
Confidence            3468999999999999999999999998765

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.17  E-value=0.015  Score=38.85  Aligned_cols=28  Identities=21%  Similarity=0.064  Sum_probs=25.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc-----C-CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE-----A-GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~-----g-~~v~v   80 (81)
                      .+|.|||+|..|...|..|++.     | ++|++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~   42 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSW   42 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEE
Confidence            4799999999999999999999     9 88875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.16  E-value=0.025  Score=37.90  Aligned_cols=30  Identities=30%  Similarity=0.586  Sum_probs=26.9

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|+| +|.+|...|..|++.|.+|++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i  148 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVL  148 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            457899999 899999999999999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.16  E-value=0.011  Score=40.86  Aligned_cols=27  Identities=30%  Similarity=0.397  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|++.|++|++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~   43 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCV   43 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            799999999999999999999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.14  E-value=0.015  Score=37.63  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=26.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||+|..|...|..|++.|++|++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~   51 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAII   51 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            35899999999999999999999999876

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.14  E-value=0.02  Score=38.97  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=24.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||+|..|...|..|+ .|++|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~   29 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTV   29 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEE
Confidence            47999999999999999999 9998875

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.14  E-value=0.016  Score=41.03  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+..|..|++ |++|++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~   27 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTI   27 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEE
Confidence            68999999999999999999 999875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.10  E-value=0.026  Score=38.94  Aligned_cols=28  Identities=25%  Similarity=0.280  Sum_probs=24.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|+ +|.+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L   33 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVL   33 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            589999999999999999999998 6443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.09  E-value=0.033  Score=37.76  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|...|..|++.|++|++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~   37 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAI   37 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999999999876

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.08  E-value=0.02  Score=38.36  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|-+|.+.|..|.+.|++|++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v  157 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFL  157 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEE
Confidence            47899999999999999999999987665

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.08  E-value=0.038  Score=36.78  Aligned_cols=31  Identities=19%  Similarity=0.102  Sum_probs=27.5

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|.|+ |..|...+..|+++|++|++
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~   40 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRG   40 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEE
Confidence            34578999998 99999999999999999874

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.08  E-value=0.031  Score=36.90  Aligned_cols=29  Identities=21%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|.|+ |..|...+..|+++|++|++
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~   36 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTV   36 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            578999999 99999999999999999875

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.07  E-value=0.028  Score=38.06  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|+|+|-+|.++|..|++.|. +|+|
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i  149 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVI  149 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEE
Confidence            46899999999999999999999996 6654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.06  E-value=0.039  Score=37.17  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||+|..|...|..|++.|++|++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~   58 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTV   58 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEE
Confidence            36899999999999999999999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.05  E-value=0.029  Score=38.21  Aligned_cols=30  Identities=23%  Similarity=0.173  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ..++++|+|+|-+|.+++..|++.|.+ ++|
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i  156 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQV  156 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            467999999999999999999999984 665

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.03  E-value=0.007  Score=42.05  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=25.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC-------CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA-------GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g-------~~v~v   80 (81)
                      .+|.|||+|..|...|..|++.|       ++|++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~   56 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRM   56 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEE
Confidence            57999999999999999999999       88875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.01  E-value=0.019  Score=41.51  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|+..|..|++ |++|++
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~   63 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVA   63 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEE
Confidence            489999999999999999998 999875

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.00  E-value=0.025  Score=43.03  Aligned_cols=30  Identities=30%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-.+|.|||+|..|...|..|++.|++|++
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l  342 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILM  342 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEE
Confidence            346899999999999999999999999986

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.99  E-value=0.029  Score=38.85  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|+|+|-+|.+++..|++.|. +++|
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v  177 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKL  177 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence            46799999999999999999999998 5654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.97  E-value=0.028  Score=35.41  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=24.9

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|.|+ |..|...+..|+++|++|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~   29 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLA   29 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEE
Confidence            5899998 99999999999999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.95  E-value=0.026  Score=41.01  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|.|||.|..|...|..|+++|++|++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v   43 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSI   43 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEE
Confidence            46899999999999999999999999876

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.93  E-value=0.025  Score=38.63  Aligned_cols=30  Identities=13%  Similarity=0.236  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|+|+|-+|.+++..|++.|. +|+|
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v  151 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYV  151 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence            46799999999999999999999998 5655

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.91  E-value=0.021  Score=41.22  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.+..|||.|..|+..|..|+++||+|++
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~   39 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLG   39 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEE
Confidence            456899999999999999999999999975

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.91  E-value=0.03  Score=35.04  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|.|+ |..|...+..|+++|++|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~   29 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTA   29 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEE
Confidence            6999996 99999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.90  E-value=0.026  Score=38.42  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=26.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..+|.|||.|..|...|..|++.|+ +|++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~   53 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAA   53 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEE
Confidence            4689999999999999999999999 7765

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.90  E-value=0.028  Score=39.73  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+++|+|+|+|..|..+|..|...|. +|++
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v  196 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLV  196 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEE
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEE
Confidence            46799999999999999999999998 6654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.89  E-value=0.029  Score=37.06  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|.+.|++|++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~   28 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIG   28 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence            689999999999999999999998765

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.89  E-value=0.029  Score=37.90  Aligned_cols=29  Identities=31%  Similarity=0.177  Sum_probs=26.5

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.||| .|..|.+.|..|++.|++|++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~   50 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISI   50 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEE
Confidence            35899999 999999999999999999875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.88  E-value=0.033  Score=34.40  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=25.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|.|+ |..|...+..|+++|++|++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~   32 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTV   32 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEE
Confidence            57999998 99999999999999998865

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.86  E-value=0.032  Score=38.41  Aligned_cols=25  Identities=36%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ..||+|||+|..|...|..|+.+|+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~   31 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQT   31 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999999987

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=94.86  E-value=0.036  Score=38.20  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=27.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|+|+|..|...+..+.+.|++|++
T Consensus         9 ~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~   39 (391)
T 1kjq_A            9 PAATRVMLLGSGELGKEVAIECQRLGVEVIA   39 (391)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            4557999999999999999999999998764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.85  E-value=0.026  Score=38.68  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      +|.|||+|..|...|..|++.|+  +|++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l   30 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVL   30 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEE
Confidence            69999999999999999999998  7664

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.83  E-value=0.033  Score=36.24  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             CccCCCcEEEECCC---HHHHHHHHHHhHcCCCeee
Q psy11001         48 TLRTGKKVAIVGSG---PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~G---~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+.++++|.|+.   --|...|..|+++|++|++
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~   45 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAF   45 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEE
Confidence            34567899999963   6899999999999999875

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.82  E-value=0.031  Score=38.05  Aligned_cols=30  Identities=17%  Similarity=0.381  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..++++|+|+|-+|...+..|++.|. +|+|
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v  155 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITV  155 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEE
Confidence            46799999999999999999999997 6665

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.82  E-value=0.031  Score=38.42  Aligned_cols=29  Identities=17%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      ..+|.|||+|..|...|+.|+.+|+  ++.+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L   44 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVL   44 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            4689999999999999999999998  5544

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.81  E-value=0.029  Score=36.67  Aligned_cols=27  Identities=26%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +|.|||+|..|...|..|++.| ++|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~   29 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYI   29 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEE
Confidence            6899999999999999999999 88865

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=94.80  E-value=0.028  Score=40.62  Aligned_cols=30  Identities=27%  Similarity=0.326  Sum_probs=26.8

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLG-AAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~-~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||-|-+|++ +|..|.++|++|.+
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~   48 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISG   48 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEE
Confidence            4568999999999998 89999999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.77  E-value=0.027  Score=38.49  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=26.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ..+|.|||.|..|...|..|+++| ++|++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~   53 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAA   53 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEE
Confidence            368999999999999999999999 98875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.76  E-value=0.033  Score=38.11  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=24.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Cee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TEL   79 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~   79 (81)
                      .+|.|||+|..|...|..|+.+|+ ++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~   30 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIV   30 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence            479999999999999999999997 644

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.75  E-value=0.034  Score=38.95  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|...|..|+++|++|++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v   50 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVV   50 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEE
Confidence            46899999999999999999999999876

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.75  E-value=0.036  Score=36.90  Aligned_cols=29  Identities=28%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++|+|.|+ |..|...+..|+++|++|++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~   32 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYG   32 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            468999998 99999999999999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.73  E-value=0.034  Score=36.78  Aligned_cols=28  Identities=29%  Similarity=0.214  Sum_probs=24.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      .+|.|||+|..|...|..|++.|+  +|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~   31 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG   31 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEE
Confidence            479999999999999999999998  6654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=94.72  E-value=0.027  Score=37.94  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|+|-.|.+.|..|++.| +|++
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v  155 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-NIII  155 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEE
Confidence            3578999999999999999999999 8775

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.72  E-value=0.038  Score=38.38  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..+|.|||+|..|.+.|..|+..|+ ++++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L   36 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVL   36 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            4689999999999999999999998 6544

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.71  E-value=0.039  Score=38.37  Aligned_cols=25  Identities=32%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ..+|.|||+|..|.+.|..|++.|+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~   29 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGI   29 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999999997

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=94.69  E-value=0.025  Score=40.62  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=26.8

Q ss_pred             CCCcEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLG-AAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~-~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||-|-+|++ +|..|.++|++|.+
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~   47 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISG   47 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEE
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEE
Confidence            4568999999999998 89999999999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.68  E-value=0.057  Score=37.76  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      ...+|.|||+|..|...|+.|+.+|+  ++.+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L   51 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVAL   51 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEE
Confidence            45799999999999999999999997  4543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.67  E-value=0.048  Score=38.04  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ....+|.|||+|..|.+.|+.|+.+|+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~   43 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDL   43 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            445799999999999999999999997

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.62  E-value=0.039  Score=37.31  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=25.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .++++|+|+|-+|.+++..|++.|. +++|
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v  148 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKI  148 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            4689999999999999999999997 5665

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.042  Score=40.14  Aligned_cols=29  Identities=10%  Similarity=0.048  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|...|..|+++|++|++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v   38 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCA   38 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence            46899999999999999999999999876

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.60  E-value=0.029  Score=36.63  Aligned_cols=30  Identities=27%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             CCCcEEEECC-CH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      +++.++|.|+ |. -|...|..|+++|++|++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~   52 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVI   52 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEE
Confidence            4678999998 75 999999999999999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.58  E-value=0.033  Score=37.81  Aligned_cols=28  Identities=29%  Similarity=0.506  Sum_probs=24.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      .+|.|||+|..|...|..|+++|  ++|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l   31 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVF   31 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEE
Confidence            37999999999999999999999  56654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.57  E-value=0.037  Score=37.80  Aligned_cols=27  Identities=26%  Similarity=0.537  Sum_probs=23.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      +|+|||+|..|...|..|+++  |++|++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l   30 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVL   30 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEE
Confidence            699999999999999999996  677764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=94.56  E-value=0.043  Score=38.19  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|+|+|..|...+..+.+.|++|++
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv   40 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVV   40 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            457899999999999999999999999875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.55  E-value=0.016  Score=41.91  Aligned_cols=28  Identities=32%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      =+|+|+|+|..|...|..|...|++|+|
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~v   31 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITI   31 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            3799999999999999999999999987

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.55  E-value=0.04  Score=40.53  Aligned_cols=30  Identities=27%  Similarity=0.510  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|+|+|..|..+|..|+..|.+|++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv  293 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIV  293 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            468999999999999999999999998875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.55  E-value=0.03  Score=37.25  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+|..|...|..|++.|++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~   33 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVV   33 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEE
Confidence            3799999999999999999999998865

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.54  E-value=0.035  Score=36.88  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|...|..|++.|++|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~   28 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLII   28 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEE
Confidence            689999999999999999999999875

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=94.53  E-value=0.04  Score=38.00  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|+|+|..|...+..|.+.|+++++
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~   29 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIV   29 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            5799999999999999999999998764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.53  E-value=0.028  Score=37.27  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=25.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|...|..|++.|++|++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~   31 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHV   31 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEE
Confidence            4799999999999999999999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.53  E-value=0.025  Score=40.95  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=25.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|.|||.|..|+..|..|+++  |++|++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~   39 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTV   39 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            4899999999999999999999  688865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=94.50  E-value=0.05  Score=37.54  Aligned_cols=29  Identities=38%  Similarity=0.536  Sum_probs=26.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|.+.|..|++.|++|++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~   44 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTV   44 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEE
Confidence            46899999999999999999999998865

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.50  E-value=0.044  Score=38.15  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ...+|+|||+|..|.+.|+.|+..|+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~   33 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGI   33 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            45699999999999999999999988

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.48  E-value=0.04  Score=36.52  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|.|+ |..|...+..|+++|++|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~   31 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVG   31 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEE
Confidence            367999998 99999999999999999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.48  E-value=0.036  Score=39.64  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE   74 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~   74 (81)
                      ..++|+|||+|.+|+..|..|++.
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~  169 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTD  169 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhh
Confidence            467999999999999999999974

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.48  E-value=0.048  Score=36.65  Aligned_cols=30  Identities=23%  Similarity=0.123  Sum_probs=26.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|.|| |..|...+..|.++|++|++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~   54 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIG   54 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            3578999996 99999999999999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.43  E-value=0.041  Score=36.68  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=25.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||+ |..|...|..|++.|++|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~   40 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAA   40 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            48999999 99999999999999998875

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.42  E-value=0.055  Score=36.22  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=25.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+ +++|+|+|-+|.+++..|.+.|. +++|
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v  137 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWV  137 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            35 89999999999999999999998 6665

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.42  E-value=0.037  Score=37.62  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+||.+||-|..|...|..|+++||+|++
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v   33 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVV   33 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEE
Confidence            35899999999999999999999999986

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=94.41  E-value=0.034  Score=41.59  Aligned_cols=30  Identities=27%  Similarity=0.138  Sum_probs=27.2

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVG--SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG--~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||  +|..|+.+|.+|++.|.+|++
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtl  553 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSI  553 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEE
Confidence            356899999  999999999999999999876

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.40  E-value=0.049  Score=35.16  Aligned_cols=33  Identities=30%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             CccCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         48 TLRTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .....++++|.|+ |-.|...|..|+++|++|++
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~   43 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVII   43 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            3456788999997 45899999999999999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.37  E-value=0.058  Score=35.66  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=25.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++|||+|-.|...|..|.+.|++|++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v  144 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWV  144 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            899999999999999999999987765

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.34  E-value=0.029  Score=40.32  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=25.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|.|||.|..|+..|..|+++  |++|++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~   35 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTV   35 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            4799999999999999999999  788875

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.33  E-value=0.16  Score=35.25  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-.++++.|||-|..|...|..|...|++|+.
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~  165 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGMHVIG  165 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCCEEEE
Confidence            34578999999999999999999999998864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.31  E-value=0.043  Score=36.55  Aligned_cols=28  Identities=32%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|...|..|++.|++|++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~   32 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYA   32 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEE
Confidence            5799999999999999999999998865

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.24  E-value=0.025  Score=38.58  Aligned_cols=28  Identities=39%  Similarity=0.431  Sum_probs=25.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC-------CCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA-------GTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g-------~~v~v   80 (81)
                      .+|.|||+|..|...|..|++.|       ++|++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~   43 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTM   43 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEE
Confidence            47999999999999999999999       88765

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.20  E-value=0.059  Score=37.31  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=25.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ..+|.|||+|..|.+.|..|++.|+ ++.+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l   34 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVL   34 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence            3589999999999999999999998 5443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.19  E-value=0.053  Score=39.27  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|...|..|+++|++|++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v   29 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAV   29 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEE
Confidence            699999999999999999999999875

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.19  E-value=0.056  Score=38.34  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|+|..|...+..+.+.|++|++
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v   63 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAV   63 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            467999999999999999999999999875

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=94.18  E-value=0.071  Score=37.40  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|+|+|..|...+..+.+.|++|++
T Consensus        18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~~   47 (433)
T 2dwc_A           18 SAQKILLLGSGELGKEIAIEAQRLGVEVVA   47 (433)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            346899999999999999999999999864

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.17  E-value=0.056  Score=35.70  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|.|+ |..|...+..|+++|++|++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~   29 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVV   29 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEE
Confidence            6999999 99999999999999999865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.12  E-value=0.059  Score=35.36  Aligned_cols=28  Identities=14%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .+|.|||+|..|...|..|++.|++ |.+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~   39 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQV   39 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEE
Confidence            4799999999999999999999998 554

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=94.12  E-value=0.05  Score=37.35  Aligned_cols=27  Identities=19%  Similarity=0.034  Sum_probs=24.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+|..|...+..+.+.|+++++
T Consensus         1 ~iliiG~g~~g~~~~~a~~~~G~~v~~   27 (369)
T 3aw8_A            1 MIGILGGGQLGRMLALAGYPLGLSFRF   27 (369)
T ss_dssp             CEEEECCSHHHHHHHHHHTTBTCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            589999999999999999999998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.11  E-value=0.057  Score=39.66  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|+|.|..|..+|..|...|.+|++
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv  302 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSV  302 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence            3568999999999999999999999998765

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.10  E-value=0.061  Score=34.33  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|.|+ |..|...|..|+++|++|++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~   30 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIG   30 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEE
Confidence            46899987 88999999999999999875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=94.09  E-value=0.042  Score=36.27  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|..|...|..|++ |++|++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~   28 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLV   28 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEE
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEE
Confidence            69999999999999999999 999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.09  E-value=0.057  Score=39.05  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.|||.|..|...|..|+++|++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v   30 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCA   30 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.08  E-value=0.057  Score=37.00  Aligned_cols=29  Identities=28%  Similarity=0.166  Sum_probs=25.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      ..+|.|||.|..|.+.|..|++.|+  +|++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~   63 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYG   63 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEE
Confidence            3689999999999999999999999  6654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.07  E-value=0.05  Score=37.27  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=24.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      +|.|||+|..|.+.|..|+++|+  ++.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L   30 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIAL   30 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEE
Confidence            69999999999999999999998  5554

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.06  E-value=0.057  Score=38.73  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ...+|+|+|+|.+|..+|..|...|. ++++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v  221 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVA  221 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEE
Confidence            45799999999999999999999998 4544

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.06  E-value=0.063  Score=37.92  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|+|.|..|..+|..|...|.+|++
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~GakVvv  203 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLV  203 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            3578999999999999999999999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.03  E-value=0.025  Score=36.57  Aligned_cols=28  Identities=21%  Similarity=0.253  Sum_probs=24.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|+|..|...|..|.+.|+ |++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~v   36 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVL   36 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEE
Confidence            4689999999999999999999998 765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.03  E-value=0.078  Score=37.01  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=26.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|.|||.|..|-+.|..|.++|++|++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~   36 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFG   36 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence            36799999999999999999999999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.99  E-value=0.041  Score=34.74  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=25.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|.|| |..|...+..|+++|++|++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~   33 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTA   33 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEE
Confidence            68999995 99999999999999998875

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.97  E-value=0.067  Score=35.97  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=26.5

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|.|+ |..|...+..|+++|++|++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~   56 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTV   56 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEE
Confidence            4578999998 99999999999999999874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=93.94  E-value=0.056  Score=37.52  Aligned_cols=31  Identities=32%  Similarity=0.385  Sum_probs=27.3

Q ss_pred             cCCCcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||.| ..|..+|..|.++|..|++
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv  194 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTI  194 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence            467899999965 5899999999999999886

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=93.94  E-value=0.056  Score=35.73  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=27.5

Q ss_pred             CccCCCcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         48 TLRTGKKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        48 ~~~~~~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+++++|.|++ --|...|..|+++|++|++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~   43 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVS   43 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            34567889999984 4899999999999999875

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=93.94  E-value=0.075  Score=36.61  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|.|||.|..|...|..|+..|++|++
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~  183 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFL  183 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCCEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence            4567999999999999999999999999864

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.94  E-value=0.053  Score=39.63  Aligned_cols=30  Identities=20%  Similarity=0.120  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCHHHHHH-HHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGA-AHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~-A~~L~~~g~~v~v   80 (81)
                      ..++|.+||-|-+|+++ |..|.++|++|++
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~   48 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTG   48 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEE
Confidence            45789999999999985 8889999999975

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.93  E-value=0.064  Score=37.71  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|+|+|..|...+..+.+.|++|++
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~   52 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNV   52 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            57999999999999999999999999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=93.90  E-value=0.049  Score=38.03  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=27.3

Q ss_pred             cCCCcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||+| ..|..+|..|.++|.+|++
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv  206 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGATVYS  206 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEE
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCCEEEE
Confidence            357899999999 5799999999999988875

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=93.89  E-value=0.071  Score=35.25  Aligned_cols=28  Identities=18%  Similarity=0.140  Sum_probs=25.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|.|| |..|...+..|+++|++|++
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~   30 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGYSVNT   30 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCCEEEE
Confidence            67999995 99999999999999999864

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.89  E-value=0.082  Score=35.39  Aligned_cols=28  Identities=21%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|.|+ |..|...+..|+++|++|++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~   31 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGYLPVV   31 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            57999986 99999999999999999875

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.89  E-value=0.062  Score=35.37  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=25.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|.|| |..|...+..|+++|++|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~   31 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYA   31 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEE
Confidence            357999997 99999999999999999865

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=93.86  E-value=0.08  Score=33.81  Aligned_cols=30  Identities=13%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|.|+ |..|...|..|+++|++|++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~   36 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVA   36 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence            3578999998 78999999999999999875

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=93.83  E-value=0.055  Score=32.17  Aligned_cols=28  Identities=36%  Similarity=0.439  Sum_probs=23.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHc-CCCe
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTE   78 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v   78 (81)
                      ..++++|+|+|..|...+..|.+. ||++
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~v   31 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHP   31 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEE
Confidence            357899999999999999998875 6664

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.83  E-value=0.079  Score=35.76  Aligned_cols=29  Identities=24%  Similarity=0.173  Sum_probs=26.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|.|+ |..|...+..|.+.|++|++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~   39 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYI   39 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEE
Confidence            468999999 99999999999999999875

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=93.82  E-value=0.082  Score=33.82  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=26.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|.|+ |..|...|..|+++|++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~   36 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVA   36 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            3578999998 78999999999999999875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=93.81  E-value=0.061  Score=37.11  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=27.3

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||. +..|..+|..|+++|..|++
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv  190 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTV  190 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEE
Confidence            35789999995 56999999999999999876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.80  E-value=0.079  Score=36.16  Aligned_cols=31  Identities=23%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+.+|+|+|+|..|+.++..+...|.+|+.
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~  205 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSV  205 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence            3467999999999999999999999998764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.79  E-value=0.062  Score=33.59  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+| +|..|..++..++..|.+|++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~   68 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYT   68 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEE
Confidence            457899999 599999999999999998764

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=93.78  E-value=0.058  Score=39.38  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=24.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|+|+|-+|.++|..|++.|.+|++
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~~V~i  392 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGAKVVI  392 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC-CEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            357899999999999999999999998765

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.78  E-value=0.081  Score=35.68  Aligned_cols=29  Identities=24%  Similarity=0.062  Sum_probs=26.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|.|+ |..|...+..|+++|++|++
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~   56 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVG   56 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence            468999998 99999999999999999875

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.76  E-value=0.08  Score=38.40  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC---Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG---TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~---~v~v   80 (81)
                      ...+++|+|+|-||.++|..|.+.|.   +++|
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~v  217 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRV  217 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEE
Confidence            35789999999999999999999998   4554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.74  E-value=0.08  Score=36.59  Aligned_cols=31  Identities=26%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|.|||.|..|...|..|+..|++|++
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~  178 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILY  178 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEE
Confidence            3567999999999999999999999998865

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=93.70  E-value=0.067  Score=37.17  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=27.9

Q ss_pred             cCCCcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||+| ..|..+|..|.++|..|++
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv  194 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTT  194 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEE
Confidence            357899999999 5899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1gtea1	182	a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,	3e-16
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	9e-13
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	2e-12
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	5e-10
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	6e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-07
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	1e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-06
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	3e-06
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-06
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	6e-06
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	1e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-05
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	3e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	7e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	8e-05
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	7e-04
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.003

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 182

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.9 bits (163), Expect = 3e-16
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 1   FTGRVCPAP--CEGACVLG-INEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKV 55
             G VCP    C G C L    E ++ I  ++    +        +   P L + +K+
Sbjct: 124 TCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKM 181

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (142), Expect = 9e-13
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 10 CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
          C    V   +        I  + +  A    + K           V IVG+G SGL AA+
Sbjct: 10 CLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDK--FAVSDVIIVGAGSSGLSAAY 67

Query: 70 QL 71
           +
Sbjct: 68 VI 69

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 57.5 bits (137), Expect = 2e-12
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 9  PCEGA--CVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLG 66
           C G   C+         +   + A     + +GW   +    +    V IVG+GPSG  
Sbjct: 4  VCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSE 63

Query: 67 AAHQLNK 73
          AA  L +
Sbjct: 64 AARVLME 70

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.4 bits (122), Expect = 5e-10
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 22 AVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
          A T   I+ +I+     + ++   I        V +VG+G +GL AA++++K    ++ 
Sbjct: 5  AFTFDPIKESIVSREMTRRYMTDMIT--YAETDVVVVGAGSAGLSAAYEISKNPNVQVA 61

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 42.9 bits (100), Expect = 6e-07
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
          KK+ IVG+G SG     QL +
Sbjct: 3  KKILIVGAGFSGAVIGRQLAE 23

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 42.9 bits (99), Expect = 6e-07
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
           K+VA++G+G SGL AA++L  
Sbjct: 1  AKRVAVIGAGVSGLAAAYKLKI 22

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 53 KKVAIVGSGPSGLGAAHQLNKE 74
          +K+AI+G+GPSGL  A  L  E
Sbjct: 5  RKIAIIGAGPSGLVTAKALLAE 26

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 41.3 bits (95), Expect = 2e-06
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
           +  +      K V IVG+G +GL AA+ L  
Sbjct: 20 ARNGLKATSNPKHVVIVGAGMAGLSAAYVLAG 51

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.9 bits (94), Expect = 3e-06
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 51 TGKKVAIVGSGPSGLGAAHQLNK 73
             K+A++G+GP+ +  A  L +
Sbjct: 3  YSAKIALLGAGPASISCASFLAR 25

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-06
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 47 PTLRTGKKVAIVGSGPSGLGAAHQLNK 73
          PT +T  KV I+GSG SGL AA QL  
Sbjct: 1  PTKKT-GKVIIIGSGVSGLAAARQLQS 26

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (91), Expect = 6e-06
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
            +AIVGSGPS   AA  L K
Sbjct: 3  YYIAIVGSGPSAFFAAASLLK 23

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
           ++ +VGSGP+G   A  L K
Sbjct: 2  PQICVVGSGPAGFYTAQHLLK 22

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 3e-05
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
              IVGSG  G   A++L K
Sbjct: 2  YDYIIVGSGLFGAVCANELKK 22

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 38.2 bits (87), Expect = 3e-05
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 54 KVAIVGSGPSGLGAAHQLNK 73
           VA+VG G SGL  AH L  
Sbjct: 2  NVAVVGGGISGLAVAHHLRS 21

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 36.7 bits (84), Expect = 7e-05
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80
           V +VG+G SGL A ++L +E G  + 
Sbjct: 9  DVLVVGAGFSGLYALYRL-RELGRSVH 34

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 36.9 bits (83), Expect = 8e-05
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 54 KVAIVGSGPSGLGAAHQLNK 73
          +V +VG+G SG+ AA +L++
Sbjct: 2  RVIVVGAGMSGISAAKRLSE 21

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 3e-04
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 55 VAIVGSGPSGLGAAHQLNK 73
          V +VG G SG+ AA  L+ 
Sbjct: 2  VVVVGGGISGMAAAKLLHD 20

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 34.7 bits (78), Expect = 4e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 51 TGKKVAIVGSGPSGLGAAHQLNK 73
          T  ++A+VG   SGL AA  L  
Sbjct: 3  TTDRIAVVGGSISGLTAALMLRD 25

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.1 bits (77), Expect = 7e-04
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 54 KVAIVGSGPSGLGAAHQLNK 73
          +VAI+G+GPSGL     L+K
Sbjct: 4  QVAIIGAGPSGLLLGQLLHK 23

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 32.8 bits (74), Expect = 0.002
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 10 CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
          C  AC+  I       K   C + +         P +P     K +A+VG+GP+GL  A 
Sbjct: 7  CNQACLDQIFVG----KVTSCLV-NPRACHETKMPILPA-VQKKNLAVVGAGPAGLAFAI 60

Query: 70 QLNK 73
              
Sbjct: 61 NAAA 64

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 32.4 bits (72), Expect = 0.003
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 54 KVAIVGSGPSGLGAAHQLNK 73
           + I G+G  GL  A  L++
Sbjct: 3  DILIAGAGIGGLSCALALHQ 22

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.37
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.37
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.15
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	99.12
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.08
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.04
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.99
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.98
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.97
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.93
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.92
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.91
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.87
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.87
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.82
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.8
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.79
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.74
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.73
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.73
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.72
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.7
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.7
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.7
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.69
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.67
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.67
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.67
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.66
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.66
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.62
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.62
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.6
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.59
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.57
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.55
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.54
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.51
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.5
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.49
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.44
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.42
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.4
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.4
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.4
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.4
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.39
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.38
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.38
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.3
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.28
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.28
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.27
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.26
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.25
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.25
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.23
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.22
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.21
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.21
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.19
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.18
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.16
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.13
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.13
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.1
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.08
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.06
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.05
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.01
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.01
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.99
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.93
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.91
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.91
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.79
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.73
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.63
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.6
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.56
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.53
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.52
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.52
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.49
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.46
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.4
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.4
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.36
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.31
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.31
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.29
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.29
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.28
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.14
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.02
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.01
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.89
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.88
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.84
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.73
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.72
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.63
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.57
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.55
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.48
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.38
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.37
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.37
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.37
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.35
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.31
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.28
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.21
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.16
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.15
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.13
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.1
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.08
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.08
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.07
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.03
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.02
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.02
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.99
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.97
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.96
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.93
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.89
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.74
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.66
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.62
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.62
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.56
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.56
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.53
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.49
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.42
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.4
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.37
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.13
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.09
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.09
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.99
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.98
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.94
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.86
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.83
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.79
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.77
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.76
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.75
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.72
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.67
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.58
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.54
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.51
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.49
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.4
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.27
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.21
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.15
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.13
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.12
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.04
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.03
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.98
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.91
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.87
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.86
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.62
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.57
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.56
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.44
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.23
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.22
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.21
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	93.15
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.11
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.99
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.97
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.96
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.96
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.94
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.9
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.88
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.67
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.63
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.59
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.57
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.51
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.51
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.47
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.44
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.41
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.41
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.4
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.39
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.34
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.32
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.26
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.19
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.17
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.17
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.11
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.05
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.02
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.01
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.99
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.93
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.93
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.88
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.79
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.78
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.74
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.68
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.62
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.61
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.59
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.58
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.56
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.55
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.51
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.5
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.36
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.23
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	91.19
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.18
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.15
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.09
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.07
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	91.03
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.98
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.96
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.9
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.82
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	90.79
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.78
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.67
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	90.59
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.58
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.48
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.46
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.08
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	89.8
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.46
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	89.4
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.94
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.87
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	88.72
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.68
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.6
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	88.52
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	88.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.31
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.03
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	87.96
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	87.92
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.71
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.45
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.2
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.16
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.44
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	86.35
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	86.3
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	86.16
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.96
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	85.61
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	85.55
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	85.5
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.4
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.15
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	85.03
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.81
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.7
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.66
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	84.57
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	84.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.48
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.3
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	84.13
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	83.78
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.68
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	83.24
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.21
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	82.71
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	82.14
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.98
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	81.42
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.56
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	80.28

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.37  E-value=6.7e-14  Score=90.94  Aligned_cols=74  Identities=27%  Similarity=0.415  Sum_probs=54.1

Q ss_pred             ccCccchHHHhhcCC-CCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001          4 RVCPAPCEGACVLGI-NEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus         4 riC~~~C~~~C~~~~-~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|.. |+..|.+.. .+.++  .-++.....+....+|.+...+...+.++|+||||||||+++|.+|+++|++|+|
T Consensus         3 r~c~~-c~~c~~~~~~~~~~~--~c~~n~~~~~e~~~~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l   77 (233)
T d1djqa3           3 RVCIG-CNVCISRWEIGGPPM--ICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHL   77 (233)
T ss_dssp             CCCCC-CCHHHHHHHHSSSCC--CCSSCTTTTTHHHHCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccchh-hHHHHcccccCCcee--eeecCcccChHHhcCCCCCccCcccCCceEEEEcccHHHHHHHHHHHHhccceee
Confidence            67866 888787753 33443  2344444455566666654445556789999999999999999999999999987

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=2.2e-14  Score=91.89  Aligned_cols=70  Identities=23%  Similarity=0.318  Sum_probs=46.1

Q ss_pred             ccCccchHHHhhcCC-CCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001          4 RVCPAPCEGACVLGI-NEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus         4 riC~~~C~~~C~~~~-~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      |.|.. |++.|.... .+.++..     ..+.... +.+..+. ....+.++|+|||||||||++|++|+++||+|+|.
T Consensus         2 r~Ci~-C~~~C~~~~~~~~~~~C-----~~Np~~g-~e~~~~~-~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~   72 (179)
T d1ps9a3           2 NTCIG-CNQACLDQIFVGKVTSC-----LVNPRAC-HETKMPI-LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLF   72 (179)
T ss_dssp             CCCCC-CCTTTHHHHHTTCCCCC-----SSCTTTT-CTTTSCC-CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccccc-cHHHHhhHhhcCCeeEE-----eeCcccc-Ccccccc-CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEE
Confidence            67887 888887653 3344432     1111111 1122222 23456789999999999999999999999999873

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=3.1e-12  Score=85.84  Aligned_cols=74  Identities=24%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             cCcc-chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001          5 VCPA-PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus         5 iC~~-~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      .+|. +|...|.+....+++.+..+++....+.+..+|..+.  .....++|+|||+||+|+++|++|+++  |++|+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~   80 (311)
T d2gjca1           4 STPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDL--DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCI   80 (311)
T ss_dssp             GSCCCCTTTTTCCSTTCTTCCCCCCCHHHHHHHHHHHHHHHH--HHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEE
T ss_pred             cchhhhhhhhheeccccccceeeechhhHHHHHHHhhhcccc--ccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence            4563 7999999998778899999988888777766654322  224457899999999999999999976  999987

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.12  E-value=8e-12  Score=80.25  Aligned_cols=55  Identities=24%  Similarity=0.360  Sum_probs=43.5

Q ss_pred             CccccCcc--chHHHhhcCCC-CCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcE
Q psy11001          1 FTGRVCPA--PCEGACVLGIN-EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKV   55 (81)
Q Consensus         1 ~~~riC~~--~C~~~C~~~~~-~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v   55 (81)
                      ||||+||+  +|+.+|+++.. ++||+|+.|++|+.++....++.....|...++++|
T Consensus       124 icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~~~~~~~~~~~~P~~Pt~kKV  181 (182)
T d1gtea1         124 TCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKM  181 (182)
T ss_dssp             HHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGS
T ss_pred             HHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence            68999987  59999999876 569999999999999999888755444444455554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.08  E-value=4e-11  Score=77.48  Aligned_cols=31  Identities=35%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.++|+|||||++||++|++|+++|++|+|
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~v   58 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTV   58 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence            4568999999999999999999999999987

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.08  E-value=3.3e-11  Score=75.98  Aligned_cols=29  Identities=38%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|||+|||||+|||+||++|+++|++|+|
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~v   29 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTV   29 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEE
Confidence            47899999999999999999999999987

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.7e-11  Score=74.74  Aligned_cols=31  Identities=42%  Similarity=0.496  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+..||+|||||+|||+||+.|+++|++|+|
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~V   33 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTL   33 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            3457899999999999999999999999987

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.99  E-value=1.7e-10  Score=70.78  Aligned_cols=28  Identities=39%  Similarity=0.587  Sum_probs=25.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      ++|+|||||+|||++|++|+++|+ +|+|
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~v   29 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLI   29 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEE
Confidence            479999999999999999999997 5876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=2.1e-10  Score=70.49  Aligned_cols=30  Identities=20%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|||||++|+++|..|+++|++|+|
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~v   33 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLH   33 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            458899999999999999999999999987

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.93  E-value=4e-10  Score=71.31  Aligned_cols=30  Identities=33%  Similarity=0.480  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.+||+|||||++|+++|++|+++|++|+|
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~v   34 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHI   34 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEE
Confidence            457899999999999999999999999987

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.92  E-value=4e-10  Score=69.79  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .++||+||||||+||++|.+|+++|++ |+|
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v   33 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITI   33 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEE
Confidence            358999999999999999999999995 766

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.91  E-value=3.8e-10  Score=71.30  Aligned_cols=27  Identities=41%  Similarity=0.690  Sum_probs=26.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++||++|++|+++|++|+|
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~v   28 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVL   28 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            699999999999999999999999987

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.87  E-value=9.8e-10  Score=68.96  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..|+++||||||||+++|.+|+|+|++|+|
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~v   31 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTAL   31 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            468999999999999999999999999987

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.87  E-value=9.2e-10  Score=70.44  Aligned_cols=30  Identities=33%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +..||+||||||+|+++|..|+++|++|+|
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v   32 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDV   32 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            457899999999999999999999999987

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=6.7e-10  Score=70.38  Aligned_cols=25  Identities=52%  Similarity=0.541  Sum_probs=23.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      .++|+|||||||||+||++|+++||
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~   26 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAAD   26 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCC
Confidence            3699999999999999999999995

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.80  E-value=1.6e-09  Score=73.14  Aligned_cols=29  Identities=38%  Similarity=0.453  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+||+++|+.|+++|++|+|
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~v   30 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHI   30 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.9e-09  Score=70.03  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++||++|++|+++|++|+|
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~V   27 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVV   27 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            589999999999999999999999987

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2.4e-09  Score=67.67  Aligned_cols=30  Identities=27%  Similarity=0.363  Sum_probs=28.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|||+||||+++|.+|++.|++|+|
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~l   33 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTAC   33 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            458999999999999999999999999987

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.74  E-value=4.5e-09  Score=67.10  Aligned_cols=29  Identities=38%  Similarity=0.548  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+||+++|+.|+++|++|+|
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~l   30 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLL   30 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            37899999999999999999999999987

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.73  E-value=4.3e-09  Score=68.33  Aligned_cols=30  Identities=37%  Similarity=0.519  Sum_probs=28.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|||||++|+++|++|+++|++|+|
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~v   31 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLL   31 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            458999999999999999999999999987

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.73  E-value=5.1e-09  Score=65.83  Aligned_cols=30  Identities=27%  Similarity=0.337  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+||||+++|.+++++|++|+|
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~v   31 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTC   31 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            358999999999999999999999999987

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=4.1e-09  Score=67.09  Aligned_cols=28  Identities=36%  Similarity=0.565  Sum_probs=25.2

Q ss_pred             CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      +||+|||||||||+||.+|++.  |++|+|
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v   31 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDI   31 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEE
Confidence            5899999999999999999886  678876

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.72  E-value=4e-09  Score=68.07  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||++|+++|++|+++|++|+|
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~G~~V~v   32 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKENKNTAL   32 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999987

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=5.6e-09  Score=66.42  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+|+||||||||+++|.++++.|++|.|
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~v   31 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMV   31 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            57999999999999999999999999987

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.70  E-value=3.4e-09  Score=66.44  Aligned_cols=30  Identities=30%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+||||||+|+++|.+|+|.|++|+|
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~v   33 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLL   33 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence            458999999999999999999999999876

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.2e-09  Score=66.17  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+||||||+||++|.+|+|.|.+|+|
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~i   33 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVL   33 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEE
Confidence            457899999999999999999999999987

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.69  E-value=4.4e-09  Score=67.12  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+||||+++|.+|++.|++|+|
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~v   34 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAI   34 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            458999999999999999999999999987

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.67  E-value=6.8e-09  Score=71.65  Aligned_cols=31  Identities=35%  Similarity=0.554  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhH------cCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNK------EAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~------~g~~v~v   80 (81)
                      ...++|+||||||||++||+.|+|      +|++|+|
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~Vll   66 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCL   66 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEE
Confidence            345899999999999999999998      8999987

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.67  E-value=7.9e-09  Score=67.77  Aligned_cols=54  Identities=19%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             CCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhH-cCCCeee
Q psy11001         20 EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        20 ~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      -.|+......+...++.+...-       .....+|+||||||||+++|++|++ .|++|+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~-------~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~v   62 (278)
T d1rp0a1           8 FDPIKESIVSREMTRRYMTDMI-------TYAETDVVVVGAGSAGLSAAYEISKNPNVQVAI   62 (278)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHH-------HHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEE
T ss_pred             eecchHHHHhHHHHHhhhcccc-------cccCCCEEEECCCHHHHHHHHHHHHccCCeEEE
Confidence            3566666677776666554331       1234789999999999999999987 5999987

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.67  E-value=8.9e-09  Score=66.63  Aligned_cols=29  Identities=31%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+||+.+|+.|+++|++|+|
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~v   32 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTV   32 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            36899999999999999999999999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.7e-09  Score=63.44  Aligned_cols=28  Identities=36%  Similarity=0.412  Sum_probs=26.8

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+||||||+|+++|.+++++|.+|+|
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~i   29 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGL   29 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            6899999999999999999999999886

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.4e-09  Score=69.06  Aligned_cols=28  Identities=36%  Similarity=0.373  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|||||+||+++|..|+++|++|+|
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~i   29 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLV   29 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEE
Confidence            5799999999999999999999999987

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=9.6e-09  Score=64.70  Aligned_cols=29  Identities=10%  Similarity=0.201  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+++||||||||+++|..+++.|++|+|
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~i   30 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCAL   30 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999999999987

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.62  E-value=1.6e-08  Score=63.32  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++||||||||+++|.++++.|.+|+|
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~v   31 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTI   31 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            37899999999999999999999999987

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=1.5e-08  Score=65.88  Aligned_cols=28  Identities=43%  Similarity=0.653  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+||||||+|+++|..|+++|++|+|
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~v   30 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVI   30 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            4899999999999999999999999987

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.59  E-value=1.8e-08  Score=66.22  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=28.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|||+|++|+++|++|+++|++|+|
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~l   44 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVIL   44 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            458999999999999999999999999987

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=2.3e-08  Score=63.63  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+|+||||||||+++|..|+++|+ +|+|
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V   30 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTL   30 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEE
Confidence            589999999999999999999996 7765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.55  E-value=2.4e-08  Score=66.19  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||||+|||+||++|+++|++|+|
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~l   33 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLSTIV   33 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEE
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            36899999999999999999999999987

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=1.3e-08  Score=64.05  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=25.2

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|||||++|+++|++|+++|++|++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v   28 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQ   28 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceE
Confidence            699999999999999999999998764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.5e-08  Score=62.00  Aligned_cols=29  Identities=17%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+++||||||+|+++|.++++.|.+|+|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~v   31 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAV   31 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999999999987

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=3.7e-08  Score=62.25  Aligned_cols=30  Identities=23%  Similarity=0.377  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++||||||+|+++|.++++.|.+|+|
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~l   33 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVL   33 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence            357999999999999999999999999987

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=5.7e-08  Score=63.83  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|+|+|||||+||++||++++|+|.++.+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktll   30 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGL   30 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            48999999999999999999999999876

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.49  E-value=5.7e-08  Score=61.15  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      +.|+++|||+||||+++|.++++.|.+ |.|
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~i   32 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAV   32 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            468999999999999999999999975 443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.44  E-value=9.5e-08  Score=62.43  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=25.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+|+|||||.+|+++|++|+++|. +|+|
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~l   30 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITV   30 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEE
Confidence            479999999999999999999996 5876

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.43  E-value=7.8e-08  Score=64.43  Aligned_cols=30  Identities=30%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||||++||++|..|+++|++++|
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i   35 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHV   35 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEE
Confidence            457899999999999999999999999887

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.42  E-value=7.2e-08  Score=64.35  Aligned_cols=29  Identities=41%  Similarity=0.602  Sum_probs=25.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v   80 (81)
                      -|+|+|||||+||+++|..|++.|  ++|+|
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~v   34 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTL   34 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEE
Confidence            478999999999999999998877  47765

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.40  E-value=7.9e-08  Score=63.60  Aligned_cols=30  Identities=33%  Similarity=0.327  Sum_probs=28.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK   81 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~   81 (81)
                      .++++|||||++|+++|..|++.|++|+|.
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvL   33 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMF   33 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEE
Confidence            478999999999999999999999999873

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.40  E-value=8.4e-08  Score=63.77  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||+|+||+++|++|+++|.+|+|
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~v   47 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVIL   47 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEE
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            357899999999999999999999999987

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.40  E-value=1.2e-07  Score=61.46  Aligned_cols=28  Identities=18%  Similarity=0.458  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+++||||||+|+.+|..+++.|++|.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~l   29 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVAL   29 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            6899999999999999999999999987

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.40  E-value=8.8e-08  Score=63.53  Aligned_cols=29  Identities=31%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+|+|||+|+||+++|+.|+++|++|+|
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~l   51 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVIL   51 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEE
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            35899999999999999999999999987

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.39  E-value=8.6e-08  Score=61.09  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=26.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      +.|+++|||+||||+++|.++++.|.+ |.|
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~v   32 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAV   32 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            468999999999999999999999975 544

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.38  E-value=9.4e-08  Score=62.72  Aligned_cols=30  Identities=43%  Similarity=0.464  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHh-----HcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLN-----KEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~-----~~g~~v~v   80 (81)
                      ..++|+||||||+|+++|..|+     ++|++|+|
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~v   40 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRI   40 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEE
Confidence            4589999999999999999997     57999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=7e-08  Score=64.59  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.++|+|||+|+|||++|++++++|.+|+|
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~l   35 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCAL   35 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence            3457999999999999999999999999987

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.30  E-value=3e-07  Score=55.04  Aligned_cols=27  Identities=33%  Similarity=0.532  Sum_probs=24.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ++||+|||||++|+.+|.+|++.+.++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~   28 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSI   28 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCC
Confidence            589999999999999999999999753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.28  E-value=5e-07  Score=52.65  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||||+.|+.+|..|++.|.+|++
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtl   50 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTI   50 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEE
Confidence            347899999999999999999999999987

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=4.8e-07  Score=52.89  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+.+|..|++.|.+|+|
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtl   49 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHL   49 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEE
Confidence            47899999999999999999999999987

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.27  E-value=3.3e-07  Score=61.25  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|||||++|+.+|..|+++|++|+|
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~Vlv   30 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLM   30 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEE
Confidence            699999999999999999999999987

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.26  E-value=4.8e-07  Score=54.98  Aligned_cols=30  Identities=30%  Similarity=0.406  Sum_probs=27.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+|+|||||++|+.+|..|++.|.+++|
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            357899999999999999999999999765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.25  E-value=5.8e-07  Score=52.34  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++++|||||+.|+.+|..|++.|.+|++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtl   49 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSV   49 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEE
Confidence            47899999999999999999999999987

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=2.8e-07  Score=60.68  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=26.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++|+|||+|+|||+||+.+++.| +|+|
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~l   34 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIV   34 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEE
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEE
Confidence            45689999999999999999999988 8876

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.24  E-value=5.7e-07  Score=58.23  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.++++|||+|++|+.+|..|++.|.+|++
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~v   70 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLI   70 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            3568999999999999999999999999886

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=8.5e-07  Score=49.98  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=28.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|+|.|.+|+++|.+|.++|.+|++
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~   33 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRV   33 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEE
Confidence            4578999999999999999999999999986

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.22  E-value=7.7e-07  Score=52.53  Aligned_cols=30  Identities=27%  Similarity=0.405  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||||+.|+.+|..|++.|.+|++
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtl   58 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTV   58 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEE
Confidence            357999999999999999999999999987

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.21  E-value=4.8e-07  Score=60.62  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+++|||||++|+.+|..|+++|++|+|
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~Vlv   35 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQI   35 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence            447899999999999999999999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.21  E-value=7.6e-07  Score=52.59  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+.|+.+|..|+++|.+|++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl   58 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSL   58 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEE
Confidence            47999999999999999999999999987

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.19  E-value=6.9e-07  Score=59.22  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=26.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH----cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK----EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~----~g~~v~v   80 (81)
                      ..+|+|||+|+||++||+.|++    +|++|+|
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~v   53 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTL   53 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEE
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEE
Confidence            4689999999999999999986    7999987

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.18  E-value=9.1e-07  Score=52.91  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||++|+.+|..|+++|.+|++
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtv   63 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTL   63 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceee
Confidence            57999999999999999999999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.16  E-value=7.2e-07  Score=52.46  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+.|+.+|..|+++|++|++
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtl   60 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKL   60 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEE
Confidence            47899999999999999999999999987

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.13  E-value=1.2e-06  Score=50.54  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             chhhHHHHHHH----hhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         24 TIKNIECAIID----HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        24 ~i~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+.++.|...    ..+...|..   +.+..+++|+|||+|.+|+..|.+|++.+-++++
T Consensus         3 ~ipGl~~f~~~~~G~i~Hs~~y~~---~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~   60 (107)
T d2gv8a2           3 NIKGLDEYAKAVPGSVLHSSLFRE---PELFVGESVLVVGGASSANDLVRHLTPVAKHPIY   60 (107)
T ss_dssp             CCBTHHHHHHHSTTSEEEGGGCCC---GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEE
T ss_pred             CCCChHHHhccCCccEEECCcCcc---hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEE
Confidence            35667766533    334555554   4557789999999999999999999998877653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=1.9e-06  Score=50.82  Aligned_cols=29  Identities=21%  Similarity=0.098  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+.|+..|..|++.|.+|+|
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vti   48 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTV   48 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEE
Confidence            46899999999999999999999999987

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.10  E-value=1.5e-06  Score=50.94  Aligned_cols=29  Identities=28%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+.|+..|..|++.|.+|++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtl   50 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYI   50 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccccee
Confidence            47899999999999999999999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=2.3e-06  Score=50.35  Aligned_cols=29  Identities=21%  Similarity=0.376  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+.|+..|..|++.|.+|+|
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vti   51 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTV   51 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeE
Confidence            47999999999999999999999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.06  E-value=2.6e-06  Score=49.87  Aligned_cols=30  Identities=17%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++++|||||+.|+..|..|++.|.+|++
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vti   50 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTV   50 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEE
Confidence            447899999999999999999999999987

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.06  E-value=1.7e-06  Score=58.50  Aligned_cols=30  Identities=37%  Similarity=0.547  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++++|||||++|+..|..|++.|++|+|
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~Vlv   30 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLL   30 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEE
Confidence            358999999999999999999999999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.8e-06  Score=50.07  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||+|+.|+..|..|++.|.+|++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtl   50 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSL   50 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEE
Confidence            47999999999999999999999999987

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.05  E-value=1.5e-06  Score=52.32  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|+|+|..|..+|.+|+++||+|+|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v   30 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTV   30 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence            58999999999999999999999999987

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.01  E-value=2.7e-06  Score=51.81  Aligned_cols=29  Identities=28%  Similarity=0.328  Sum_probs=27.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++++|||+|..|+..|..|+++|++|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~   29 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLA   29 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEE
Confidence            37899999999999999999999999986

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=1.8e-06  Score=55.05  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      +|+|||+||||+++|.++++.|.+
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~   26 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPE   26 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCC
Confidence            799999999999999999888765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.99  E-value=2.7e-06  Score=52.06  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=25.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+|||||++|+.+|..|++.|+++.|
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEE
Confidence            4699999999999999999999998765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.93  E-value=6.4e-06  Score=47.68  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++++|||||+.|+..|..|++.|.+|++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~   50 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVM   50 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheE
Confidence            57999999999999999999999999876

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=4.4e-06  Score=55.42  Aligned_cols=29  Identities=31%  Similarity=0.412  Sum_probs=25.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v   80 (81)
                      ..+|+|||+|+||++||+.++++  |.+|+|
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~l   35 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIAL   35 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEE
Confidence            36899999999999999999987  667776

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.91  E-value=5.1e-06  Score=48.84  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|..|+..|..|++.|.+|+|
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtv   53 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTV   53 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEE
Confidence            347999999999999999999999999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.83  E-value=1.1e-05  Score=47.80  Aligned_cols=30  Identities=20%  Similarity=0.229  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|||+|+.|+..|..|++.|.+|++
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vti   54 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDV   54 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEE
Confidence            357999999999999999999999999987

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.79  E-value=7.5e-06  Score=49.02  Aligned_cols=26  Identities=42%  Similarity=0.658  Sum_probs=23.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|||||++|+.+|..|++ +.+|+|
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtv   27 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTV   27 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEE
Confidence            79999999999999999975 678776

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.73  E-value=1e-05  Score=55.19  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +.++++|||||+||+..|..|++.| ++|+|
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLl   53 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLV   53 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEE
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEE
Confidence            4599999999999999999999998 78886

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.70  E-value=1.6e-05  Score=49.12  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ||+|||||++|+.+|..|++.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~   25 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPD   25 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTT
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCC
Confidence            699999999999999999998665

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.63  E-value=3.5e-05  Score=44.42  Aligned_cols=29  Identities=24%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v   80 (81)
                      +++++|||||+.|+..|..|++.   |.+|++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtl   49 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDL   49 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccce
Confidence            47999999999999999876654   777765

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.60  E-value=2e-05  Score=53.46  Aligned_cols=30  Identities=27%  Similarity=0.388  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      ..++++|||||.+|+..|..|++.+ ++|+|
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLv   46 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLV   46 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEE
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEE
Confidence            3589999999999999999999876 88887

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=6.3e-05  Score=45.76  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             CCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         47 PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        47 ~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      +.+...++|+|||||-+|+.+|..|.+.|.+.
T Consensus        40 ~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~   71 (153)
T d1gtea3          40 PLPSIRGAVIVLGAGDTAFDCATSALRCGARR   71 (153)
T ss_dssp             CCCCCCSEEEEECSSHHHHHHHHHHHHTTCSE
T ss_pred             ccccCCCEEEEECCChhHHHHHHHHHHcCCcc
Confidence            44566789999999999999999999999774

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.53  E-value=6.9e-05  Score=43.29  Aligned_cols=29  Identities=21%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC---Ceee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG---TELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~---~v~v   80 (81)
                      +++++|||||+.|+..|.+|.+.|.   +|++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtl   51 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTL   51 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEE
Confidence            4799999999999999988776654   5765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.2e-05  Score=47.99  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|||+|..|...|+.++++|++|++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l   32 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVL   32 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence            6899999999999999999999999986

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=4.3e-05  Score=45.52  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=25.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|||+|..|...|..|++.|++|++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~   28 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQG   28 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEE
Confidence            699999999999999999999999986

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.49  E-value=2.5e-05  Score=52.51  Aligned_cols=30  Identities=30%  Similarity=0.367  Sum_probs=26.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++++|||||+||+..|..|+++ ++|+|
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae~-~kVLv   53 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSEK-YKVLV   53 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTT-SCEEE
T ss_pred             cCCccEEEECccHHHHHHHHHhcCC-CCEEE
Confidence            3458999999999999999999986 88887

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.46  E-value=2.7e-05  Score=48.35  Aligned_cols=54  Identities=20%  Similarity=0.400  Sum_probs=38.8

Q ss_pred             hhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         25 IKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        25 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++.++.|-.+..++..|..  .+...++|+|+|||+|-+|..+|.+|++.+.++++
T Consensus         7 ~pG~e~F~G~v~HS~~~~~--~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~   60 (235)
T d1w4xa2           7 FPGLKDFAGNLYHTGNWPH--EPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV   60 (235)
T ss_dssp             CTTGGGCCSEEEEGGGCCS--SCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCChhhCCCcEEecCcCCC--CCCCCCCCEEEEECCCccHHHHHHHHHhhhccccc
Confidence            4455555544455556532  22345789999999999999999999999887654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.40  E-value=7.5e-05  Score=46.50  Aligned_cols=30  Identities=30%  Similarity=0.359  Sum_probs=27.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +-++|+|||+|..|...|..++++|++|++
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l   32 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILM   32 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            347899999999999999999999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.5e-05  Score=47.60  Aligned_cols=26  Identities=15%  Similarity=0.317  Sum_probs=23.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .++++|||||++|+.+|..|+++|+.
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~   29 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPG   29 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTT
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCC
Confidence            46799999999999999999999886

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=6.5e-05  Score=44.97  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||||..|+..|..|.+.|-+|+|
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtV   41 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTL   41 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            3578999999999999999999999999987

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.31  E-value=9.9e-05  Score=45.54  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||+|.-|.+.|..|+++|++|.+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l   28 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRI   28 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            689999999999999999999999986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=8.1e-05  Score=46.60  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+..|..|+++|++|+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g   28 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIG   28 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEE
Confidence            589999999999999999999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00013  Score=43.15  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH----cCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK----EAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~----~g~~v~v   80 (81)
                      .++++|||||++|+..|..|++    .|.+|++
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~   69 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQ   69 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            5789999999999999999964    5788775

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.00013  Score=41.75  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=28.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|||+|..|...|..|.+.|.+|++
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v   40 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTV   40 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4578999999999999999999999999876

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00015  Score=42.14  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+++|+|.|..|...|..|.+.|++|++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvv   28 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLA   28 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            5799999999999999999999999886

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=6.2e-05  Score=45.05  Aligned_cols=29  Identities=34%  Similarity=0.555  Sum_probs=26.1

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      ..+++|+|||+|..|+.+|..|++.|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            34689999999999999999999999764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.14  E-value=0.00011  Score=46.01  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .||+|||+|.-|.+.|..|+++|++|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l   35 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCV   35 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            5799999999999999999999999876

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.06  E-value=0.00034  Score=41.60  Aligned_cols=29  Identities=24%  Similarity=0.226  Sum_probs=25.3

Q ss_pred             CCcEEEE--CCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIV--GSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~vi--G~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.++|+  |+|..|+.+|..|+++|.+|++
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtl   69 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTI   69 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEE
Confidence            3456665  9999999999999999999987

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.02  E-value=0.00034  Score=40.77  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|+|..|...|..|.++|++|++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~v   28 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVL   28 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcce
Confidence            699999999999999999999999876

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.01  E-value=0.00029  Score=41.62  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             cEEEE-CCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIV-GSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~vi-G~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|| |+|.-|.+.|..|++.|++|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l   29 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVV   29 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEE
Confidence            58999 6799999999999999999986

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0005  Score=40.23  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=28.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..+++|+|||+|-+++..|.+|++..-+|++
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~l   55 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHL   55 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEE
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEE
Confidence            5679999999999999999999999888876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.88  E-value=0.0005  Score=41.18  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||.|||.|..|.+.|..|.++|++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~   28 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIG   28 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence            689999999999999999999999875

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.84  E-value=0.0006  Score=40.37  Aligned_cols=30  Identities=30%  Similarity=0.171  Sum_probs=27.4

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-++|.||| .|..|.+.|..|.++||+|.+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~   38 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISI   38 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEe
Confidence            447999999 699999999999999999976

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00072  Score=39.56  Aligned_cols=32  Identities=38%  Similarity=0.521  Sum_probs=28.5

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+++|+|||+|-+++..|.+|++..-+|++
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~l   58 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL   58 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEE
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEE
Confidence            35679999999999999999999998888775

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00099  Score=39.65  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=28.0

Q ss_pred             ccCCCcEEEECCCH-----------HHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGP-----------SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~-----------aG~~~A~~L~~~g~~v~v   80 (81)
                      ....++|+|+|+||           ++..++..|.+.|+++++
T Consensus         4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~il   46 (127)
T d1a9xa3           4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVIN   46 (127)
T ss_dssp             CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEE
Confidence            35668999999987           788999999999999876

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.63  E-value=0.00075  Score=37.99  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             CCccCCCcEEEECCCHHHHHH-HHHHhHcCCCee
Q psy11001         47 PTLRTGKKVAIVGSGPSGLGA-AHQLNKEAGTEL   79 (81)
Q Consensus        47 ~~~~~~~~v~viG~G~aG~~~-A~~L~~~g~~v~   79 (81)
                      |...+.+++.+||-|=+|+++ |..|.++|++|+
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~Vs   36 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQIS   36 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEE
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEE
Confidence            334567899999999999999 999999999986

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.57  E-value=0.0012  Score=38.88  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=28.8

Q ss_pred             ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|+|||+|-+++..|.+|++..-+|++
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~l   62 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYI   62 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEE
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEE
Confidence            35689999999999999999999999888876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0016  Score=39.48  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|+|+|+|=++.++++.|.+.|.+++|
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I   46 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTI   46 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEe
Confidence            468999999999999999999999988665

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.55  E-value=0.00081  Score=41.35  Aligned_cols=26  Identities=35%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.|||.|..|+..|..|+ +|++|+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g   27 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTI   27 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEE
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEE
Confidence            6899999999999999887 5999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.48  E-value=0.0014  Score=40.64  Aligned_cols=29  Identities=31%  Similarity=0.274  Sum_probs=26.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-+|+|+|+|.+|+.++..+.+.|-+|++
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~   60 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQI   60 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEE
Confidence            46999999999999999999999999876

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.38  E-value=0.0017  Score=40.74  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=26.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .-+|+|+|+|.+|+.||.-..+.|-.|++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v   57 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMA   57 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEE
Confidence            35899999999999999999999998875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.37  E-value=0.0022  Score=38.68  Aligned_cols=28  Identities=29%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .+.+||.|||+|..|.+.|+.|+.+++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~   32 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELA   32 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCc
Confidence            4568999999999999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.37  E-value=0.0024  Score=38.07  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+..+|.+|++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~   55 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVC   55 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccc
Confidence            356899999999999999999999998765

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0022  Score=37.80  Aligned_cols=30  Identities=20%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-----------SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-----------aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|+|+||           ++..++..|.+.|+++++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~Il   43 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIM   43 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEE
Confidence            457999999996           788999999999999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.35  E-value=0.0025  Score=37.89  Aligned_cols=30  Identities=27%  Similarity=0.149  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+...|.+|++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~   56 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAA   56 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccce
Confidence            356899999999999999999999988764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.31  E-value=0.002  Score=40.17  Aligned_cols=30  Identities=13%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +++||+|+|| |..|...+..|.++|++|++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~   32 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFL   32 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence            4679999998 99999999999999999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.28  E-value=0.0022  Score=40.41  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.||+|+|| |..|...+..|.++|++|++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~   32 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYV   32 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            467999997 99999999999999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.0026  Score=38.03  Aligned_cols=28  Identities=21%  Similarity=0.378  Sum_probs=24.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ..++||.|||+|-.|.+.|+.|+.+|+-
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~   31 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIA   31 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCC
Confidence            3467999999999999999999999873

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.16  E-value=0.0024  Score=37.93  Aligned_cols=26  Identities=35%  Similarity=0.449  Sum_probs=23.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ++||.|||+|..|.+.|+.|+++++.
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~   26 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELG   26 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcc
Confidence            36899999999999999999999873

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0037  Score=37.45  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=25.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+..+|.. |++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~   56 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVV   56 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEe
Confidence            356899999999999999999999985 543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.14  E-value=0.0024  Score=38.20  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ..||.|||+|..|.+.|+.|+++|+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~   29 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGI   29 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4699999999999999999999986

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0033  Score=37.66  Aligned_cols=30  Identities=30%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+...|.+|++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~   56 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYV   56 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccc
Confidence            457899999999999999999999998764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.10  E-value=0.0027  Score=38.07  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=22.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      +||.|||+|..|.+.|+.|+.+|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~   25 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV   25 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC
Confidence            789999999999999999999986

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0046  Score=35.46  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ....+|.|+|||.-|...|....+.|+++.+
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v   39 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIA   39 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEE
Confidence            3456899999999999999999999999876

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.08  E-value=0.0026  Score=38.11  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.+||-|..|...|..|.++||+|.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~   29 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNV   29 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999999875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.07  E-value=0.0037  Score=37.67  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|-|||-|..|...|..|+++||+|.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~   29 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAV   29 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEE
Confidence            689999999999999999999999976

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0043  Score=37.06  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+...|.++++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~   59 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVA   59 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchh
Confidence            467899999999999999999999988764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.02  E-value=0.0027  Score=37.93  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||.|||-|..|...|..|+++||+|++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~   28 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVV   28 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEE
Confidence            589999999999999999999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.004  Score=37.61  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      +.++|+|+|+|=++.++++.|.+.|.+ ++|
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I   46 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKI   46 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            357899999999999999999999974 444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.99  E-value=0.0047  Score=37.26  Aligned_cols=30  Identities=30%  Similarity=0.399  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v   80 (81)
                      ..++++|||+|-.|...+..|..+|.+ ++|
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v   53 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLV   53 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEE
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence            458999999999999999999999985 554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.99  E-value=0.0041  Score=36.99  Aligned_cols=28  Identities=32%  Similarity=0.312  Sum_probs=24.6

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|||.|.-|.+.|..|.+.|+.+.|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I   29 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKI   29 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEE
Confidence            4799999999999999999999986543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.97  E-value=0.0038  Score=36.84  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=25.4

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||.|||.|..|...|..|+++||++++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~   28 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVT   28 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEE
Confidence            689999999999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.96  E-value=0.00022  Score=44.94  Aligned_cols=31  Identities=13%  Similarity=0.097  Sum_probs=28.2

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...++++|+|+|..|+.+|.+|++.|.+|++
T Consensus       178 ~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  208 (233)
T d1djqa3         178 DAEAPRLIADATFTGHRVAREIEEANPQIAI  208 (233)
T ss_dssp             GGTSCCCHHHHHHHHHHHHHTTTSSCTTSCC
T ss_pred             ccCCceeEecCchHHHHHHHHHHhcCCceEE
Confidence            4567899999999999999999999999876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.94  E-value=0.0054  Score=36.94  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+...|.++++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~   57 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIII   57 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceee
Confidence            467899999999999999999999988654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.93  E-value=0.0042  Score=36.69  Aligned_cols=30  Identities=27%  Similarity=0.192  Sum_probs=26.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|.|+|+.|+.++..+...|.+|++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~   56 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVA   56 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEec
Confidence            357899999999999999999999998764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.92  E-value=0.0047  Score=37.33  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=26.4

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.+||-|..|...|..|+++||+|++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v   30 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCA   30 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEE
Confidence            5799999999999999999999999976

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.005  Score=37.15  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      .+.+|+|+|+|+.|+.++..+..+|. +|++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~   58 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIV   58 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEE
T ss_pred             CCCEEEEECCCccchhheecccccccccccc
Confidence            46789999999999999999999997 4543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.74  E-value=0.0067  Score=39.49  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=27.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.|+|+|+|| |..|...+..|.++||+|.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~   32 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRA   32 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEE
Confidence            4689999997 99999999999999999875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.66  E-value=0.006  Score=36.21  Aligned_cols=24  Identities=38%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      .||.|||+|-.|.+.|+.|..+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l   25 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT   25 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC
Confidence            589999999999999999999987

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.62  E-value=0.0088  Score=36.34  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ..+||.|||+|..|.+.|+.|..+|+-
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~   45 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLA   45 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCC
Confidence            357999999999999999999999973

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0073  Score=36.81  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=26.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+||+|+|| |..|...+..|.++|++|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~   32 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTV   32 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEE
Confidence            478999995 99999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.56  E-value=0.008  Score=36.37  Aligned_cols=29  Identities=21%  Similarity=0.341  Sum_probs=25.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC-ee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-EL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~   79 (81)
                      .+.+|+|+|+|+.|+.++..+...|.+ |+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi   56 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRII   56 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEE
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccc
Confidence            466899999999999999999999974 54

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.56  E-value=0.01  Score=35.92  Aligned_cols=30  Identities=23%  Similarity=0.352  Sum_probs=26.1

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ..+..|+|+|+|+.|+.++..+...|.+.+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~V   56 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRI   56 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCcee
Confidence            345789999999999999999999998644

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.53  E-value=0.0075  Score=38.98  Aligned_cols=30  Identities=27%  Similarity=0.194  Sum_probs=27.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|+|.|| |..|...+..|.++|++|..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~   37 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKG   37 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            5689999995 89999999999999999874

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.49  E-value=0.0074  Score=35.93  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .||.|||+|..|.+.|+.|+.+|+-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~   26 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIA   26 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCC
Confidence            5799999999999999999999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.011  Score=35.83  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      .+++|+|+|+|-++.++++.|.+.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~   44 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKE   44 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCce
Confidence            4689999999999999999999999863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.40  E-value=0.0067  Score=36.68  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++++|+|+|+|-++-++++.|.+.| +++|
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I   45 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIII   45 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceee
Confidence            4689999999999999999998877 5544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.37  E-value=0.01  Score=36.22  Aligned_cols=31  Identities=29%  Similarity=0.546  Sum_probs=27.4

Q ss_pred             cCCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -++++++|.| +|-.|...|..|+++|.+|++
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~   52 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVL   52 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhh
Confidence            3578999999 578999999999999999876

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.011  Score=38.05  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .|||+|.|| |..|...+.+|.++|++|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~   30 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTV   30 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            378999998 99999999999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.13  E-value=0.017  Score=34.80  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=25.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ..+..|+|+|+|+.|+.++..+...|...+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~V   55 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRI   55 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCcee
Confidence            446789999999999999999999997643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.09  E-value=0.017  Score=35.57  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=24.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      .+..|+|+|+|+.|+.++..+...|...+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~V   53 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVV   53 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccce
Confidence            45689999999999999999888887543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.018  Score=33.69  Aligned_cols=28  Identities=14%  Similarity=0.234  Sum_probs=26.1

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -+++|+|.|..|...+..|.++|+++++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~v   31 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTV   31 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            4799999999999999999999999876

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.99  E-value=0.017  Score=35.03  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=24.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCe
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v   78 (81)
                      +++|+|.|| |..|...+.+|.++|+.+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~   29 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLA   29 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeE
Confidence            589999999 999999999999999853

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.98  E-value=0.011  Score=35.84  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=26.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|+|+|-++.++++.|.+.+-+++|
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I   46 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVL   46 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeee
Confidence            468999999999999999999988776665

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.97  E-value=0.018  Score=34.27  Aligned_cols=29  Identities=38%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +..|+|+|+|+.|+.++..+..+|..+++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv   61 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVI   61 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccc
Confidence            56899999999999999999888876543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.012  Score=35.69  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      +..||.|||+|-.|.+.|+.|..+|+-
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~   44 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLA   44 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCC
Confidence            345899999999999999999999873

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.86  E-value=0.013  Score=34.38  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=21.6

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAG   76 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~   76 (81)
                      ||.|||+|..|.+.|+.|+.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l   24 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL   24 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC
Confidence            69999999999999999999986

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.84  E-value=0.012  Score=34.86  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ||.|||+|..|.+.|+.|+.+|.-
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~   25 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDV   25 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcC
Confidence            689999999999999999998863

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.83  E-value=0.02  Score=37.22  Aligned_cols=29  Identities=21%  Similarity=0.171  Sum_probs=26.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~   79 (81)
                      ++++|+|.|| |..|...+.+|.++|++|.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~   39 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVR   39 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEE
Confidence            4789999998 8999999999999999985

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.79  E-value=0.018  Score=36.00  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|+|-|.|-.|..+|.+|.+.|.+|++
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv   55 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLV   55 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            3578999999999999999999999999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.013  Score=34.51  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=22.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ||.|||+|-.|.+.|+.|+.+++-
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~   25 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFA   25 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCC
Confidence            799999999999999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.76  E-value=0.016  Score=36.92  Aligned_cols=28  Identities=18%  Similarity=0.115  Sum_probs=25.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|+|.|| |..|...+.+|.++||+|+.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~   29 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHG   29 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEE
Confidence            57999998 99999999999999999863

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.75  E-value=0.015  Score=38.29  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=25.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++||+|.|| |.-|...+.+|.++||+|++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~   30 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCI   30 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            368999997 99999999999999999864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.73  E-value=0.036  Score=35.42  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=25.3

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|.++|.|| +--|.++|..|++.|++|++
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga~Vii   54 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVI   54 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            45677777775 44899999999999999976

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.72  E-value=0.0095  Score=35.44  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~   77 (81)
                      ||.|||+ |..|.+.|+.|+.+|+-
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~   26 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLV   26 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCcc
Confidence            7999996 99999999999999873

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.014  Score=37.16  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=26.4

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++||+|.|| |.-|...+.+|+++|+.+++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~   31 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELV   31 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEE
Confidence            468999998 99999999999999998875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.023  Score=36.73  Aligned_cols=28  Identities=21%  Similarity=0.285  Sum_probs=25.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +||+|.|| |..|...+.+|.++|++|++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~   31 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVV   31 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            68999997 99999999999999999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.54  E-value=0.017  Score=34.41  Aligned_cols=29  Identities=17%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|+|.|| |..|...+..|.++|+++.+
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v   32 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVA   32 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEE
Confidence            468999995 99999999999999998654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.51  E-value=0.032  Score=33.64  Aligned_cols=30  Identities=17%  Similarity=0.350  Sum_probs=25.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCC-ee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT-EL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~-v~   79 (81)
                      +.+..|+|+|+|+.|+.+...+..+|.. |+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi   58 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRII   58 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEE
Confidence            3456899999999999999999999965 44

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.014  Score=31.64  Aligned_cols=28  Identities=18%  Similarity=0.120  Sum_probs=26.0

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|+|+|--|...+....+.|+++.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~v   29 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWP   29 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEE
Confidence            5799999999999999999999999876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.49  E-value=0.029  Score=33.14  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+..|+|+|+|..|+.++..+...|..+++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi   57 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRII   57 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceE
Confidence            456899999999999999999999977543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.40  E-value=0.034  Score=32.89  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=25.9

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.+.+|+|+|+|+.|+.++..++..|-..++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi   57 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRII   57 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchhe
Confidence            3456799999999999999999999876443

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.27  E-value=0.029  Score=36.45  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+-||+|.|| |..|...+..|.++||+|++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~   44 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIA   44 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEE
Confidence            4568999995 99999999999999999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.21  E-value=0.019  Score=34.13  Aligned_cols=23  Identities=43%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCC
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAG   76 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~   76 (81)
                      ||.|||+ |..|.+.|+.|+.+|+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l   25 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF   25 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc
Confidence            6999995 9999999999999986

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.029  Score=35.24  Aligned_cols=29  Identities=31%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ...+|+|+|+|-.|..+|..|++.|..-+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i   57 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNL   57 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEE
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeE
Confidence            35799999999999999999999998643

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.13  E-value=0.022  Score=33.55  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=25.0

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||.+||+|-.|.+.|..|.++|+++++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v   28 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELII   28 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEE
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEE
Confidence            689999999999999999999999876

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.13  E-value=0.046  Score=32.42  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=25.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      +.+..|+|+|+|..|+.++..++..|...+
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~V   56 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARI   56 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceE
Confidence            345689999999999999999999997544

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.12  E-value=0.031  Score=35.47  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=27.2

Q ss_pred             ccCCCcEEEECCC---HHHHHHHHHHhHcCCCeee
Q psy11001         49 LRTGKKVAIVGSG---PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        49 ~~~~~~v~viG~G---~aG~~~A~~L~~~g~~v~v   80 (81)
                      +-++|.++|.|++   =-|.+.|..|++.|.+|++
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi   39 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILV   39 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEE
Confidence            3467899999975   3899999999999999875

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.04  E-value=0.027  Score=35.93  Aligned_cols=28  Identities=21%  Similarity=0.033  Sum_probs=25.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+++|.|| |..|...+.+|.++||+|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~   30 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHG   30 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEE
Confidence            67888887 99999999999999999863

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.031  Score=35.52  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=27.1

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|.++|.||.- -|.+.|..|+++|++|++
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil   43 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVV   43 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            4578899999876 899999999999999875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.00  E-value=0.017  Score=35.80  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|.|| |..|...+.+|.++||+|+.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~   30 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIP   30 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            5999998 99999999999999999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.98  E-value=0.042  Score=32.70  Aligned_cols=25  Identities=28%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      .||.|||+|..|.+.|+.|.+++..
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~   28 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLG   28 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCC
Confidence            5899999999999999999888764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.92  E-value=0.0078  Score=34.92  Aligned_cols=27  Identities=26%  Similarity=0.115  Sum_probs=20.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhH-cCCCe
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNK-EAGTE   78 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v   78 (81)
                      .++|+|+|+|-+|.+.+.+|.+ .+|++
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~i   30 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFEL   30 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEE
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEE
Confidence            4699999999999988877643 34443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.91  E-value=0.029  Score=30.83  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             CcEEEECCCHHHHHH-HHHHhHcCCCee
Q psy11001         53 KKVAIVGSGPSGLGA-AHQLNKEAGTEL   79 (81)
Q Consensus        53 ~~v~viG~G~aG~~~-A~~L~~~g~~v~   79 (81)
                      -||.+||-|=+||++ |..|.++|++|.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~Vs   29 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVY   29 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEE
Confidence            478899998899966 899999999986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.87  E-value=0.1  Score=31.68  Aligned_cols=42  Identities=21%  Similarity=0.178  Sum_probs=31.9

Q ss_pred             hCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         39 QGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        39 ~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..|........-.++++.|||.|..|-..|..|...|.+|..
T Consensus        29 ~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~   70 (181)
T d1qp8a1          29 GDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRG   70 (181)
T ss_dssp             TCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCCCCcccCceEEEeccccccccceeeeecccccccc
Confidence            345433222234678999999999999999999999998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.042  Score=32.57  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=26.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|.|+ |+.|+.+...+..+|.+|++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~   58 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILG   58 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCccccc
Confidence            4568999996 99999999999999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.03  Score=36.20  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|+|| |..|...+..|.++|++|++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~   29 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVII   29 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEE
Confidence            5899987 99999999999999999875

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.62  E-value=0.036  Score=34.81  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=25.2

Q ss_pred             CCCcEEEECCCH---HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP---SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~---aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|+.-   -|.++|..|++.|++|++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i   39 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVAL   39 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEE
Confidence            568899999632   799999999999999875

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.57  E-value=0.037  Score=35.77  Aligned_cols=28  Identities=18%  Similarity=0.288  Sum_probs=25.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+|.| +|..|...+.+|.++|++|.+
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v   31 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHV   31 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEE
Confidence            6899999 599999999999999998654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.56  E-value=0.035  Score=32.84  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHhHcCCC
Q psy11001         54 KVAIVG-SGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        54 ~v~viG-~G~aG~~~A~~L~~~g~~   77 (81)
                      ||.||| +|..|.+.|+.|..+++-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~   26 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIA   26 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCC
Confidence            799999 699999999999999874

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.036  Score=34.58  Aligned_cols=30  Identities=20%  Similarity=0.463  Sum_probs=24.8

Q ss_pred             CCCcEEEECCCH---HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP---SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~---aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|+.-   -|.+.|..|++.|++|++
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i   36 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAF   36 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEE
Confidence            467889988753   578899999999999875

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.04  Score=35.30  Aligned_cols=28  Identities=25%  Similarity=0.150  Sum_probs=24.6

Q ss_pred             CcE-EEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKV-AIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v-~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||| +|.|| |..|...+.+|.++||+|+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~   30 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHG   30 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEE
Confidence            578 78887 89999999999999999863

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.23  E-value=0.042  Score=34.29  Aligned_cols=30  Identities=13%  Similarity=0.276  Sum_probs=25.0

Q ss_pred             CCCcEEEECC-CH--HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GP--SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~--aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|+++|.|+ |-  -|.+.|..|++.|.+|++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil   37 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVL   37 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEE
Confidence            4688999994 43  688999999999999875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.22  E-value=0.039  Score=34.86  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.2

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+|.++|.||+- -|..+|..|+++|++|++
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi   35 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVV   35 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            3567888888765 899999999999999875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.21  E-value=0.071  Score=31.31  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=23.3

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVG-SGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG-~G~aG~~~A~~L~~~g~~   77 (81)
                      .+.+|+|+| +|+.|+.++..+...|..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~   54 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGA   54 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccc
Confidence            356899999 599999999999999964

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.044  Score=35.75  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=26.4

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|.++|.||+- -|.+.|..|+++|++|++
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi   36 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVV   36 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            4567888888876 889999999999999876

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.11  E-value=0.049  Score=34.30  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.++|..|++.|++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~   34 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVA   34 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            468889999865 899999999999999876

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.99  E-value=0.061  Score=34.57  Aligned_cols=30  Identities=23%  Similarity=0.060  Sum_probs=26.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++++|.|| |..|...+.+|.++|++|+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~   45 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVG   45 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEE
Confidence            3478999987 99999999999999999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.052  Score=34.14  Aligned_cols=30  Identities=23%  Similarity=0.524  Sum_probs=26.3

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.+.|..|++.|++|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~   36 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVA   36 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            578899999865 789999999999999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.96  E-value=0.035  Score=35.18  Aligned_cols=31  Identities=13%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|.++|.||+- -|.++|..|++.|++|++
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i   38 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAV   38 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            3568888889866 899999999999999876

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.96  E-value=0.052  Score=34.24  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=24.3

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|.|| |..|.....+|.++|++|+.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~   29 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIV   29 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            6888887 99999999999999999864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.94  E-value=0.047  Score=34.29  Aligned_cols=30  Identities=30%  Similarity=0.325  Sum_probs=25.5

Q ss_pred             CCCcEEEECC-C--HHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-G--PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G--~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|+ |  =-|.+.|..|++.|++|++
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i   36 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAF   36 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            4688999995 3  2799999999999999976

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.058  Score=35.18  Aligned_cols=28  Identities=25%  Similarity=0.126  Sum_probs=24.8

Q ss_pred             CcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVG-SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG-~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |.|+|.| +|..|...+.+|.++|++|+.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~   30 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHG   30 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEE
Confidence            5677989 699999999999999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.056  Score=33.60  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=25.6

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|+++|++|++
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~   34 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVL   34 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467788888865 899999999999999875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.67  E-value=0.061  Score=33.51  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.+.|..|++.|++|++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~   33 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTI   33 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            468899999855 899999999999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.63  E-value=0.055  Score=33.66  Aligned_cols=29  Identities=10%  Similarity=0.084  Sum_probs=25.6

Q ss_pred             CCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|+|.|+.- -|.+.|..|+++|++|.+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~   31 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVAS   31 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            68999999854 899999999999999874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.59  E-value=0.062  Score=33.72  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|.++|.|++- -|.+.|..|++.|++|++
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~   36 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAV   36 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            4678899999865 899999999999999875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.57  E-value=0.067  Score=31.15  Aligned_cols=27  Identities=26%  Similarity=0.252  Sum_probs=23.2

Q ss_pred             cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEA-GTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v   80 (81)
                      +|.+||+|--|.+.|..|.+.| +++.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v   29 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYI   29 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEE
Confidence            6899999999999999888887 76654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.087  Score=32.02  Aligned_cols=30  Identities=30%  Similarity=0.464  Sum_probs=28.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|+++|+|-|..|...|..|+..|-+|++
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v   52 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVII   52 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEe
Confidence            578999999999999999999999999886

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.51  E-value=0.067  Score=33.98  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=26.2

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|+++|++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~   34 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVL   34 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEE
Confidence            468899999875 888999999999999875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.47  E-value=0.066  Score=33.95  Aligned_cols=30  Identities=20%  Similarity=0.207  Sum_probs=25.0

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i   35 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVI   35 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            457788888755 899999999999999876

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.44  E-value=0.069  Score=33.75  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i   34 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVV   34 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467889999865 789999999999999876

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.41  E-value=0.067  Score=31.80  Aligned_cols=30  Identities=23%  Similarity=0.260  Sum_probs=25.6

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|.|+ |+.|+.+...+..+|.+|+.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~   57 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLA   57 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccc
Confidence            3568999996 99999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.41  E-value=0.047  Score=33.86  Aligned_cols=29  Identities=24%  Similarity=0.178  Sum_probs=25.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ..||+|.||.- -|.+.|..|+++|++|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~   31 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLN   31 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            46899999855 899999999999999875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.069  Score=33.82  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.+.|..|++.|++|++
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~   39 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVG   39 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467889999865 899999999999999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.39  E-value=0.082  Score=33.43  Aligned_cols=30  Identities=27%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||.- -|.+.|..|+++|.+|++
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii   34 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFV   34 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEE
Confidence            467899999865 799999999999999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.34  E-value=0.052  Score=34.31  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=23.9

Q ss_pred             CCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      +|.++|.|++- -|.++|..|++.|++|++
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~   33 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVL   33 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            56677777755 788999999999999876

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.32  E-value=0.087  Score=33.53  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=27.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+++|+|-|.|-.|..+|.+|.+.|.++++
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~   67 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNTEGAKLVV   67 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEe
Confidence            578999999999999999999999999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.26  E-value=0.074  Score=33.34  Aligned_cols=30  Identities=20%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.+.|..|+++|++|++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~   34 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVA   34 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888989876 899999999999999976

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.19  E-value=0.077  Score=33.59  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=25.7

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~   34 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIAL   34 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888889865 889999999999999875

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.17  E-value=0.049  Score=32.16  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCC
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAG   76 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~   76 (81)
                      -||.|||| |..|.+.|+.|++..+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccc
Confidence            48999996 9999999999998775

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.17  E-value=0.07  Score=32.58  Aligned_cols=28  Identities=18%  Similarity=0.243  Sum_probs=23.2

Q ss_pred             CcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      |.++|.||. =-|.++|..|+++|++|++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i   30 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVV   30 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            567777874 3888999999999999876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.11  E-value=0.079  Score=33.27  Aligned_cols=30  Identities=23%  Similarity=0.281  Sum_probs=25.6

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~   34 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVA   34 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            457888888755 899999999999999875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.05  E-value=0.13  Score=31.65  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHh
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLN   72 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~   72 (81)
                      ...++|+|||+|-.++-+|..|+
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccCceEEEECCCchhHhhhhhhc
Confidence            35689999999999999999887

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.02  E-value=0.079  Score=34.68  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=23.9

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|+|.|| |.-|...+.+|+++|+++++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~   29 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVV   29 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEE
Confidence            5899987 99999999999999998653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.01  E-value=0.081  Score=33.54  Aligned_cols=30  Identities=13%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|+.- -|.+.|..|+++|++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i   35 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYT   35 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            568899999754 888999999999999876

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.067  Score=33.65  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=24.0

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++ --|.+.|..|+++|++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~   35 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIA   35 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            35667777764 4899999999999999875

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.93  E-value=0.056  Score=34.20  Aligned_cols=30  Identities=30%  Similarity=0.339  Sum_probs=25.6

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.++|..|++.|++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~   34 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAI   34 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888999855 889999999999999876

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.93  E-value=0.086  Score=33.25  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.+.|..|++.|++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~   34 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVAL   34 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888888654 888999999999999875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.088  Score=33.14  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||.- -|.++|..|+++|.+|++
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i   32 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVAL   32 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            356788888755 899999999999999876

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.79  E-value=0.099  Score=33.66  Aligned_cols=28  Identities=21%  Similarity=0.243  Sum_probs=24.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      |-|+|.|| |.-|...+.+|.++|++|++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~   30 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVV   30 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEE
Confidence            45777776 89999999999999999875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.78  E-value=0.066  Score=34.08  Aligned_cols=30  Identities=30%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.+.|..|++.|++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l   34 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTI   34 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEE
Confidence            457788888755 788999999999999876

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.74  E-value=0.092  Score=33.25  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=25.5

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+. -|.++|..|++.|++|.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i   33 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSL   33 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            457788889865 889999999999999876

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.68  E-value=0.036  Score=32.78  Aligned_cols=25  Identities=12%  Similarity=0.190  Sum_probs=21.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCC
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAG   76 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~   76 (81)
                      .-||.|||| |..|.+.|+.|++.+.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHh
Confidence            358999995 9999999999987654

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.62  E-value=0.11  Score=32.18  Aligned_cols=30  Identities=37%  Similarity=0.519  Sum_probs=28.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +.++|+|||=|.=|-+-|.-|+..|++|+|
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~V   44 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTV   44 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEE
Confidence            468999999999999999999999999986

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.61  E-value=0.088  Score=33.16  Aligned_cols=28  Identities=36%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             CcE-EEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         53 KKV-AIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v-~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ||| +|.||+- -|.+.|..|++.|++|++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~   30 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAI   30 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEE
Confidence            466 5557755 899999999999999875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.59  E-value=0.099  Score=32.97  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=25.1

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.++|..|++.|++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~   35 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVF   35 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            457788888854 788999999999999875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.099  Score=32.96  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      .++.++|.||+. -|...|..|+++|.+|++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l   36 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVL   36 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            456777778876 899999999999999876

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.56  E-value=0.093  Score=33.44  Aligned_cols=29  Identities=38%  Similarity=0.399  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      .+++|+|=|.|-.|..+|.+|.+.|.+|+
T Consensus        30 ~g~~v~IqGfGnVG~~~a~~L~~~Gakvv   58 (242)
T d1v9la1          30 EGKTVAIQGMGNVGRWTAYWLEKMGAKVI   58 (242)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            46899999999999999999999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.097  Score=33.91  Aligned_cols=31  Identities=16%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -++|.++|.||+- -|.++|..|++.|++|++
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi   41 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVI   41 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            3578888888865 889999999999999876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.51  E-value=0.099  Score=33.08  Aligned_cols=30  Identities=17%  Similarity=0.292  Sum_probs=25.9

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.+.|..|++.|++|++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~   37 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYT   37 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888889865 899999999999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.50  E-value=0.1  Score=33.30  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=25.8

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i   34 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAV   34 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888989854 899999999999999876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.11  Score=32.89  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=25.7

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++. -|.+.|..|++.|++|++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i   35 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVI   35 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467889999754 889999999999999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.23  E-value=0.1  Score=30.74  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=25.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|.|+ |..|+.++..+..+|.++++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~   55 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYT   55 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhcccccccee
Confidence            3568999886 99999999999999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=91.19  E-value=0.06  Score=31.39  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=21.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      .+.+|+.+|+|.. - -|.+|+++|++|+
T Consensus        20 ~~~rvLd~GCG~G-~-~a~~la~~G~~V~   46 (201)
T d1pjza_          20 PGARVLVPLCGKS-Q-DMSWLSGQGYHVV   46 (201)
T ss_dssp             TTCEEEETTTCCS-H-HHHHHHHHCCEEE
T ss_pred             CCCEEEEecCcCC-H-HHHHHHHcCCceE
Confidence            3579999999955 3 5568899999986

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.18  E-value=0.084  Score=33.57  Aligned_cols=30  Identities=30%  Similarity=0.415  Sum_probs=24.7

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.+.|..|++.|++|++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~   36 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVV   36 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            467778888644 899999999999999875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.091  Score=32.99  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=24.8

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+. -|.+.|..|++.|++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~   33 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIG   33 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            456777778755 789999999999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.09  E-value=0.088  Score=33.33  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             CCCcEEEECCC-HHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||. --|.++|..|+++|++|++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi   47 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIV   47 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            46788888864 3788999999999999875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.07  E-value=0.086  Score=33.59  Aligned_cols=30  Identities=40%  Similarity=0.451  Sum_probs=25.2

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~   33 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTI   33 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            467788888755 788999999999999876

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.03  E-value=0.14  Score=36.04  Aligned_cols=30  Identities=17%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ..++|+|+|-|..=...|..|++.|.+|+.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLH   34 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLH   34 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEE
Confidence            458999999999999999999999999974

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.079  Score=33.54  Aligned_cols=30  Identities=23%  Similarity=0.374  Sum_probs=25.4

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~   40 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVV   40 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            467888888754 899999999999999876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.96  E-value=0.15  Score=30.97  Aligned_cols=31  Identities=32%  Similarity=0.437  Sum_probs=28.7

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|+|=|..|-..|..|+..|-+|+|
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V   51 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYI   51 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEE
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEE
Confidence            3579999999999999999999999999987

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.90  E-value=0.094  Score=33.24  Aligned_cols=30  Identities=13%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.++|..|++.|++|++
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~   37 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHT   37 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            467888888765 788999999999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.11  Score=30.60  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=18.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHhHc
Q psy11001         54 KVAIVG-SGPSGLGAAHQLNKE   74 (81)
Q Consensus        54 ~v~viG-~G~aG~~~A~~L~~~   74 (81)
                      ||.||| +|..|.+.|+.|+.+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~   23 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQ   23 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCChHHHHHHHHHHhC
Confidence            689999 599999999988654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.79  E-value=0.12  Score=30.39  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~   77 (81)
                      +++|+|||+ |.+|...-.-|.++.+.
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp   27 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLP   27 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCC
Confidence            478999999 99999999888888654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.78  E-value=0.13  Score=31.91  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.4

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHc
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKE   74 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~   74 (81)
                      ...++|+|||+|-.++-+|..|.+.
T Consensus        37 ~~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          37 LSCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TTSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             ccCceEEEECCchhHHHHHHHHhcC
Confidence            3578999999999999999999884

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.67  E-value=0.14  Score=32.14  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=25.1

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.+.|..|++.|++|++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~   34 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAI   34 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            457788888754 889999999999999876

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.59  E-value=0.1  Score=30.43  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ||.+||-|..|...|..|.++|+.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~   27 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV   27 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE
Confidence            69999999999999999999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.58  E-value=0.1  Score=32.91  Aligned_cols=30  Identities=27%  Similarity=0.283  Sum_probs=23.9

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||+- -|.+.|..|++.|++|++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~   34 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTI   34 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEE
Confidence            346667777644 899999999999999875

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.48  E-value=0.11  Score=32.82  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=24.2

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.|++- -|.++|..|++.|++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~   35 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAF   35 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            356777778654 788999999999999875

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.46  E-value=0.15  Score=33.57  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=27.3

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      -.+++|+|=|.|-.|..+|.+|.+.|.+|+
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Gakvv   63 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCV   63 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            356899999999999999999999999875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.08  E-value=0.12  Score=32.47  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.++|.||.- -|.+.|..|++.|++|++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~   35 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMI   35 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            456777778654 788999999999999876

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.80  E-value=0.13  Score=32.64  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~   79 (81)
                      ||+|.|| |..|...+.+|.++|++|.
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~   28 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDV   28 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence            5889987 9999999999999999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.60  E-value=0.17  Score=31.05  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=22.1

Q ss_pred             cEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -|+|.|++- -|.++|..|++.|++|++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga~V~~   30 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGHQIVG   30 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            457778643 899999999999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.46  E-value=0.15  Score=32.04  Aligned_cols=29  Identities=24%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      +|-++|.||+- -|.++|..|++.|++|++
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~   39 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVIC   39 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            45667778754 888999999999999875

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=89.40  E-value=0.17  Score=32.55  Aligned_cols=29  Identities=34%  Similarity=0.523  Sum_probs=27.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      ++++|+|=|.|-.|..+|.+|.+.|.+++
T Consensus        35 ~g~~v~IQGfGnVG~~~a~~L~e~Gakvv   63 (255)
T d1bgva1          35 VGKTVALAGFGNVAWGAAKKLAELGAKAV   63 (255)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            46899999999999999999999999875

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.16  Score=34.76  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=24.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ..||+|||+|-.|...|..|++.|+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg   62 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFR   62 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCC
Confidence            45899999999999999999999985

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.87  E-value=0.2  Score=30.48  Aligned_cols=31  Identities=23%  Similarity=0.203  Sum_probs=26.5

Q ss_pred             cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||- ...|.=.|..|+++|..|++
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~   58 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYS   58 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEE
Confidence            46799999994 56899999999999988764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=88.72  E-value=0.24  Score=30.45  Aligned_cols=31  Identities=16%  Similarity=0.196  Sum_probs=27.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|.|||-|..|...|..|.-.|.+|+.
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~fg~~V~~   71 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT   71 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCeEEEecccccchhHHHhHhhhcccccc
Confidence            4578999999999999999999999998864

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=0.86  Score=27.28  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=27.6

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -..+++.|+|.|..|...|..|.-.|.+|..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~   72 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGMYVYF   72 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceEEEEeecccchhhhhhhcccccceEee
Confidence            4578999999999999999999999988764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.60  E-value=0.25  Score=30.36  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=21.3

Q ss_pred             EEEECC-CHHHHHHHHHHhHcCC-Ceee
Q psy11001         55 VAIVGS-GPSGLGAAHQLNKEAG-TELI   80 (81)
Q Consensus        55 v~viG~-G~aG~~~A~~L~~~g~-~v~v   80 (81)
                      |+|.|| |..|...+..|.++|+ +|++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~   29 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILV   29 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEE
Confidence            567776 8999999999999996 5653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.37  E-value=0.24  Score=28.82  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHhHcCCC
Q psy11001         53 KKVAIVGS-GPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        53 ~~v~viG~-G~aG~~~A~~L~~~g~~   77 (81)
                      -+|+|||+ |..|.....-|.+++|.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP   28 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFP   28 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCC
Confidence            57999998 99999999999877765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.31  E-value=0.26  Score=30.83  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             CcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      |-++|.||.. -|.+.|..|++.|++|++
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i   31 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFV   31 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            4446667754 899999999999999876

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.03  E-value=0.27  Score=29.64  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcC
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEA   75 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g   75 (81)
                      +..+|.|+|| |..|.+.|+.|++..
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCc
Confidence            3458999996 999999999998854

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.96  E-value=0.32  Score=30.73  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=23.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGT   77 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~   77 (81)
                      ...++++.|+|.||+..|..|...+.+
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~   51 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVK   51 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhccc
Confidence            347899999999999999999888766

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=87.92  E-value=0.31  Score=29.76  Aligned_cols=31  Identities=23%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.++++.|||.|..|-..|..|...|.+|..
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~   77 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLF   77 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             eeCceEEEeccccccccceeeeeccccceee
Confidence            3568999999999999999999999988763

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.71  E-value=0.15  Score=31.33  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|.|| |..|.....+|.++|+.|.+
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~   29 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIAL   29 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            5899997 99999999999999986654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.37  Score=29.35  Aligned_cols=29  Identities=21%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCC--Ceee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAG--TELI   80 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~--~v~v   80 (81)
                      .++|+|.|| |..|.....+|.++|.  +|++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~   45 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTL   45 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEE
Confidence            468999998 9999999999999995  5543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.20  E-value=0.13  Score=29.01  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             CcEEEECCCHHHHHHHHHHhHcC
Q psy11001         53 KKVAIVGSGPSGLGAAHQLNKEA   75 (81)
Q Consensus        53 ~~v~viG~G~aG~~~A~~L~~~g   75 (81)
                      ++++|+|.|..|...+..|...+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~   23 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE   23 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC
Confidence            57999999999999999986544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.16  E-value=0.34  Score=29.61  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=27.5

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++|.|||.|..|...|..|.-.|.+|+.
T Consensus        43 l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~   73 (199)
T d1dxya1          43 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA   73 (199)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceeeeeeecccccccccccccccceeeec
Confidence            3568999999999999999999999988764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.36  Score=30.58  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=22.4

Q ss_pred             cEEEECC-CHHHHHHHHHHhHcCC-Cee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNKEAG-TEL   79 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~~g~-~v~   79 (81)
                      ||+|.|| |..|...+.+|.++|+ +|.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~   29 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVY   29 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEE
Confidence            5899997 9999999999999995 554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.44  E-value=0.47  Score=28.52  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=26.8

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      -.++++.|||.|..|...|..|...|.+|.
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~v~   71 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDVHLH   71 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCEEE
T ss_pred             ccccceeeccccccchhhhhhhhccCceEE
Confidence            457899999999999999999999988875

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=0.32  Score=30.99  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             CcEEEE-CCCH-HHHHHHHHHhHcCCCee
Q psy11001         53 KKVAIV-GSGP-SGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        53 ~~v~vi-G~G~-aG~~~A~~L~~~g~~v~   79 (81)
                      +||++| ||.. -|.+.|..|++.|.+++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~   30 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSF   30 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeE
Confidence            577766 6543 77889999999998864

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.30  E-value=0.4  Score=26.21  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.1

Q ss_pred             cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         54 KVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        54 ~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ||+|||+|-=-=+.|+.|.+...++.+
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~   28 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHF   28 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEE
Confidence            799999998888889999988877654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.16  E-value=0.31  Score=30.21  Aligned_cols=26  Identities=31%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             CcEEEECCCH-HHHHHHHHHhHcCCCe
Q psy11001         53 KKVAIVGSGP-SGLGAAHQLNKEAGTE   78 (81)
Q Consensus        53 ~~v~viG~G~-aG~~~A~~L~~~g~~v   78 (81)
                      +.|+|.||.- -|.+.|..|++.|..+
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~   30 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIR   30 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCC
Confidence            6788888764 6779999999999753

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.46  Score=29.76  Aligned_cols=29  Identities=31%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             CCcEEEECCCH--HHHHHHHHHhHc-CCCeee
Q psy11001         52 GKKVAIVGSGP--SGLGAAHQLNKE-AGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G~--aG~~~A~~L~~~-g~~v~v   80 (81)
                      +++|+||=||-  -|+++|..|+++ |..|++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~   33 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVL   33 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            67897773333  667888999986 888775

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=85.61  E-value=0.51  Score=27.13  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=24.2

Q ss_pred             CCcEEEECCC----HHHHHHHHHHhHcCCCeee
Q psy11001         52 GKKVAIVGSG----PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        52 ~~~v~viG~G----~aG~~~A~~L~~~g~~v~v   80 (81)
                      .++|+|||+.    -.|-..+.+|.+.||++.+
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~   45 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLP   45 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceE
Confidence            4789999984    4888888999999998764

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=85.55  E-value=0.45  Score=29.66  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             CCHHHHHHHHHHhHcCCCeee
Q psy11001         60 SGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        60 ~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      +|-.|.+.|.++.++|++|++
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~l   51 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTL   51 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEE
T ss_pred             cHHHHHHHHHHHHHcCCchhh
Confidence            599999999999999999987

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=85.50  E-value=0.99  Score=27.28  Aligned_cols=31  Identities=19%  Similarity=0.086  Sum_probs=27.1

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.++++.|||.|..|...|..|.-.|.++..
T Consensus        45 l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~   75 (191)
T d1gdha1          45 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDY   75 (191)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             ecccceEEeecccchHHHHHHHHhhcccccc
Confidence            3578999999999999999999999888753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.40  E-value=0.28  Score=30.41  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             CcEEEEC-CCH----HHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVG-SGP----SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG-~G~----aG~~~A~~L~~~g~~v~v   80 (81)
                      +.|+|.| ||.    .....|+.|+++|++|.+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVll   34 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV   34 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEE
Confidence            4677887 443    345568899999999976

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.15  E-value=0.67  Score=24.33  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      ...+++|.|+ |-.|..+...+...|++|+.
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~   61 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVA   61 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEE
Confidence            3567888877 88999999999999999864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=85.03  E-value=0.52  Score=29.18  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             EEEE-CCC-HHHHHHHHHHhHcCCCeee
Q psy11001         55 VAIV-GSG-PSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~vi-G~G-~aG~~~A~~L~~~g~~v~v   80 (81)
                      |+|| ||+ =-|.++|..|++.|.+|++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i   31 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCL   31 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            5555 654 4899999999999999875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.81  E-value=0.47  Score=27.60  Aligned_cols=30  Identities=13%  Similarity=0.079  Sum_probs=23.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001         51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v   80 (81)
                      .+.+|+|.|+ |..|+.+...+...|.+|++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~   58 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIG   58 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEee
Confidence            3568999955 55999999998999988765

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.70  E-value=0.59  Score=29.53  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=25.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhH-cCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNK-EAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~-~g~~v~   79 (81)
                      .+++|+|-|.|-.|..+|.+|.+ .|.+++
T Consensus        31 ~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv   60 (239)
T d1gtma1          31 KGKTIAIQGYGNAGYYLAKIMSEDFGMKVV   60 (239)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCccee
Confidence            56899999999999999999976 587764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.66  E-value=0.5  Score=29.31  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             CcE-EEECCCH-HHHHHHHHHhHcCCC
Q psy11001         53 KKV-AIVGSGP-SGLGAAHQLNKEAGT   77 (81)
Q Consensus        53 ~~v-~viG~G~-aG~~~A~~L~~~g~~   77 (81)
                      |+| +|.|++. -|.+.|..|+++|++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~   27 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARH   27 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCcc
Confidence            454 4567755 788999999999987

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=84.57  E-value=0.88  Score=27.91  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=22.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHhHcCCCee
Q psy11001         52 GKKVAIVGS-GPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~   79 (81)
                      ...++|.|+ |=-|...|..|+++|.+++
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~v   37 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHL   37 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEE
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEE
Confidence            467899996 4488999999999999743

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.48  E-value=0.53  Score=26.37  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             CcEEEECCC----HHHHHHHHHHhHcCCCee
Q psy11001         53 KKVAIVGSG----PSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        53 ~~v~viG~G----~aG~~~A~~L~~~g~~v~   79 (81)
                      |+|+|||+.    -.|-.....|.+.||+|+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~   32 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVL   32 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEE
Confidence            579999974    478899999999999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.48  E-value=0.04  Score=33.22  Aligned_cols=27  Identities=7%  Similarity=-0.021  Sum_probs=22.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKEAGTE   78 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~g~~v   78 (81)
                      .++|.+||+|..|+..|..+.+.|.+|
T Consensus       177 ~~~i~~iG~g~~g~ela~~~~~~G~~v  203 (217)
T d1gesa1         177 IEGIYAVGDNTGAVELTPVAVAAGRRL  203 (217)
T ss_dssp             STTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred             CCcEEEECCCccHHHHHHHHHHHHHHH
Confidence            468999999999998888888887665

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.5  Score=28.52  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=27.7

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||-+. .|.-.|..|.++|..|++
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~   66 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTV   66 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEE
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhccccc
Confidence            3579999999877 999999999999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.26  Score=30.15  Aligned_cols=27  Identities=11%  Similarity=0.103  Sum_probs=21.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~   79 (81)
                      .+.+|+.+|+|. | ..+.+|+++|++|+
T Consensus        45 ~~~rvLd~GCG~-G-~~a~~LA~~G~~V~   71 (229)
T d2bzga1          45 SGLRVFFPLCGK-A-VEMKWFADRGHSVV   71 (229)
T ss_dssp             CSCEEEETTCTT-C-THHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCC-c-HHHHHHHhCCCcEE
Confidence            456999999995 5 34688899999986

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.78  E-value=0.61  Score=26.98  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             CCcEEEECCCH----HHHHHHHHHhHcCCCee
Q psy11001         52 GKKVAIVGSGP----SGLGAAHQLNKEAGTEL   79 (81)
Q Consensus        52 ~~~v~viG~G~----aG~~~A~~L~~~g~~v~   79 (81)
                      .++|+|||+..    .|-..+..|.++||+|+
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~   50 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVY   50 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEE
Confidence            47899999854    78889999999999875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.68  E-value=0.39  Score=29.91  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             EEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.||+- -|.++|..|++.|++|++
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i   30 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLV   30 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            45556543 889999999999999875

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.24  E-value=0.67  Score=29.11  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHhH-cCCCee
Q psy11001         51 TGKKVAIVGSGPSGLGAAHQLNK-EAGTEL   79 (81)
Q Consensus        51 ~~~~v~viG~G~aG~~~A~~L~~-~g~~v~   79 (81)
                      .+++|+|=|.|-.|..+|.+|.+ .|.+++
T Consensus        30 ~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv   59 (234)
T d1b26a1          30 KKATVAVQGFGNVGQFAALLISQELGSKVV   59 (234)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHHCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCceE
Confidence            46899999999999999999975 588765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.69  Score=27.89  Aligned_cols=31  Identities=19%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      -.+++++|||-+. .|.-.|..|+++|..|++
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~   68 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTT   68 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             cccceEEEEecCCccchHHHHHHHhccCceEE
Confidence            4679999999866 999999999999998875

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=82.71  E-value=0.55  Score=29.15  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CcEEEECCCH-----HHHHHHHHHhHcCCCeee
Q psy11001         53 KKVAIVGSGP-----SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        53 ~~v~viG~G~-----aG~~~A~~L~~~g~~v~v   80 (81)
                      |||+|.+||-     ..++.|.+|.++||+|+.
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~   33 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRW   33 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEE
Confidence            5889998763     256788999999999864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.14  E-value=0.49  Score=28.94  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             EEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      .+|.||+- -|.+.|..|+++|++|++
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi   30 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVV   30 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            45666654 899999999999999876

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.98  E-value=0.77  Score=29.60  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             cEEEECC-CHHHHHHHHHHhH-cCCCeee
Q psy11001         54 KVAIVGS-GPSGLGAAHQLNK-EAGTELI   80 (81)
Q Consensus        54 ~v~viG~-G~aG~~~A~~L~~-~g~~v~v   80 (81)
                      ||+|.|| |.-|...+.+|.+ .|++|++
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~~~~~V~~   32 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRDTNHSVVI   32 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhCCCEEEE
Confidence            6899887 9999999999875 7898864

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.42  E-value=0.5  Score=29.40  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             EEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001         55 VAIVGSGP-SGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        55 v~viG~G~-aG~~~A~~L~~~g~~v~v   80 (81)
                      ++|.|++- -|..+|..|++.|++|++
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i   29 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVAC   29 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            56777755 799999999999999876

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.56  E-value=1.1  Score=26.88  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=27.1

Q ss_pred             cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001         50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI   80 (81)
Q Consensus        50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v   80 (81)
                      -.++++.|+|.|..|...|..|...|.+|..
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~   72 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA   72 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEe
Confidence            4578999999999999999999988887753

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=80.28  E-value=0.7  Score=30.50  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHhHc
Q psy11001         52 GKKVAIVGSGPSGLGAAHQLNKE   74 (81)
Q Consensus        52 ~~~v~viG~G~aG~~~A~~L~~~   74 (81)
                      ..++++.|+|.||+..|..|.+.
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~   47 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQ   47 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHH
T ss_pred             HcEEEEECcCHHHHHHHHHHHHH
Confidence            46899999999999988887654