Psyllid ID: psy1102

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGLSVPTGGFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQSLNWNLLGSASPF
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHcHccHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHccccccc
Coil and Loop (DISEMBL)
mglsvptggflGTELALLISWCFLLSEYHVEyfsenstnineeQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRtrtrhshtDFINLACGSMICQtvwtwwggappqslnwnllgsaspf
Flexible Loop (DISEMBL)
mglsvptgGFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTgkhletgyriaiETEKIATDVLKDLESQRETlqrtrtrhshtDFINLACGSMICQTVWTWWGGAPPQSLnwnllgsaspf
Low Complexity Region (SEG)
MGLSVPTGGFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQSLNWNLLGSASPF
Disordered region (IsUnstruct)
******TGGFLGTELALLISWCFLLSEYHVEYFS***************************LETGYRIAIETEKIATDVLK****************SHTDFINLACGSMICQTVWTWWGGAPPQSLNWNLL******
Disordered Region (DISOPRED)
*****PTGGFLGTELALLISWCFLLSEYH**************************************IAIETEKIATDVLKDLESQRETLQRT**RH**************************PQSLNWNLLGSASP*
Disordered Region (DISEMBL)
MGLSVPTGGFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQ***********SHTDFINLACGSMICQTVWTWWGGAPPQSLNWNLLGSASPF
Disordered Region (DISPRO)
***SVPTGGFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQSLNWNLLGS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLSVPTGGFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETxxxxxxxxxxxxxxxxxxxxxxxxxxxxDFINLACGSMICQTVWTWWGGAPPQSLNWNLLGSASPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q96AJ9	217	Vesicle transport through	yes	N/A	0.528	0.336	0.445	2e-09
O89116	217	Vesicle transport through	yes	N/A	0.550	0.350	0.415	3e-09
Q9JI51	224	Vesicle transport through	yes	N/A	0.565	0.348	0.430	6e-09
Q04338	217	t-SNARE VTI1 OS=Saccharom	yes	N/A	0.427	0.271	0.423	9e-07
O88384	232	Vesicle transport through	no	N/A	0.594	0.353	0.360	2e-05
P58200	232	Vesicle transport through	no	N/A	0.594	0.353	0.348	6e-05
Q9UEU0	232	Vesicle transport through	no	N/A	0.594	0.353	0.348	8e-05
Q2KIU0	232	Vesicle transport through	yes	N/A	0.594	0.353	0.337	0.0001

>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 39  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
           N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R  
Sbjct: 109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLR 168

Query: 99  HTDFINLACGSMIC 112
            TD  NL   S I 
Sbjct: 169 ETD-ANLGKSSRIL 181

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence.
Homo sapiens (taxid: 9606)

>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 36  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
           ++ N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R 
Sbjct: 106 DAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARD 165

Query: 96  RHSHTDFINLACGSMIC 112
           R    D  NL   S I 
Sbjct: 166 RLRDAD-ANLGKSSRIL 181

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be concerned with increased secretion of cytokines associated with cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 34  SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRT 93
           SEN      E+   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR 
Sbjct: 111 SENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRA 170

Query: 94  RTRHSHTDFINLACGSMIC 112
           R R   TD  NL   S I 
Sbjct: 171 RERLRETD-ANLGKSSRIL 188

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2 (By similarity). May be concerned with increased secretion of cytokines associated with cellular senescence.

Rattus norvegicus (taxid: 10116)

>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 40/59 (67%)

Query: 36  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTR 94
           N++NI+++Q Q+LL     ++++G  L+   RIA ETE I + ++ DL SQRETL+  R
Sbjct: 108 NASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENAR 166

t-SNARE found in various SNARE complexes involved in multiple transport pathways. The composition of the t-SNARE complexes is specific for a limited number of v-SNAREs and therefore allows only the vesicles carrying the matching v-SNARE to fuse.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 32  YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
           Y  EN  ++N  QSQR  LL  +E + R  + +E  +RIA ET++I T+++++L  QR+ 
Sbjct: 115 YTLENE-HLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQ 173

Query: 90  LQRTRTRHSHTDFINLACGSMICQTV 115
           L+RT++R  +T+  NL+    I +++
Sbjct: 174 LERTKSRLVNTNE-NLSKSRKILRSM 198

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Mus musculus (taxid: 10090)

>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 32  YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
           Y  EN  ++N  QSQR  LL  +E + R  + +E  +RIA ET++I ++++++L  QR+ 
Sbjct: 115 YTLENE-HLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQ 173

Query: 90  LQRTRTRHSHTDFINLACGSMICQTV 115
           L+RT++R  +T+  NL+    I +++
Sbjct: 174 LERTKSRLVNTNE-NLSKSRKILRSM 198

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Rattus norvegicus (taxid: 10116)

>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 32  YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
           Y  EN  ++N  QSQR  LL  +E + R  + +E  +RIA ET++I ++++++L  QR+ 
Sbjct: 115 YAVENE-HMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQ 173

Query: 90  LQRTRTRHSHTDFINLACGSMICQTV 115
           L+RT++R  +T   NL+    I +++
Sbjct: 174 LERTKSRLVNTSE-NLSKSRKILRSM 198

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 32  YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
           Y  EN  ++N  QSQR  LL  ++ + R  + +E  +RIA ET++I ++++++L  QR+ 
Sbjct: 115 YAVENE-HMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQ 173

Query: 90  LQRTRTRHSHTDFINLACGSMICQTV 115
           L+RT++R  +T   NL+    I +++
Sbjct: 174 LERTKSRLVNTSE-NLSKSRKILRSM 198

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
270012334	211	hypothetical protein TcasGA2_TC006472 [T	0.478	0.312	0.545	7e-13
307178357	219	Vesicle transport through interaction wi	0.456	0.287	0.587	7e-13
91088835	218	PREDICTED: similar to CG3279 CG3279-PA [	0.478	0.302	0.545	7e-13
383857557	217	PREDICTED: vesicle transport through int	0.521	0.331	0.540	1e-12
332026915	217	Vesicle transport through interaction wi	0.456	0.290	0.571	2e-12
350422666	219	PREDICTED: vesicle transport through int	0.521	0.328	0.527	2e-12
340723947	219	PREDICTED: vesicle transport through int	0.521	0.328	0.527	2e-12
170041713	220	SNARE Vti1a protein [Culex quinquefascia	0.478	0.3	0.545	2e-12
328785300	219	PREDICTED: vesicle transport through int	0.521	0.328	0.540	2e-12
322778811	226	hypothetical protein SINV_07175 [Solenop	0.456	0.278	0.555	3e-12

>gi|270012334|gb|EFA08782.1| hypothetical protein TcasGA2_TC006472 [Tribolium castaneum]

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 36  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
           N   I+ +Q QRLLD SE +ERTG+ LE GYR+ +ET+ I T VL++L  QRET++RTR+
Sbjct: 101 NDVRISSDQKQRLLDNSERMERTGRQLEEGYRVVLETQDIGTQVLQNLNEQRETIKRTRS 160

Query: 96  RHSHTD 101
           R   TD
Sbjct: 161 RLRETD 166

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178357|gb|EFN67106.1| Vesicle transport through interaction with t-SNAREs-like protein 1A [Camponotus floridanus]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query: 39  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
           N+ E+Q +RLLD SE IERTG+ L+ GYR+A+ETE+I + VLK+L  QRET+QR+R R  
Sbjct: 110 NVTEDQRKRLLDASERIERTGRTLQNGYRMALETEEIGSQVLKELHEQRETIQRSRGRLR 169

Query: 99  HTD 101
            TD
Sbjct: 170 ETD 172

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088835|ref|XP_970611.1| PREDICTED: similar to CG3279 CG3279-PA [Tribolium castaneum]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 36  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
           N   I+ +Q QRLLD SE +ERTG+ LE GYR+ +ET+ I T VL++L  QRET++RTR+
Sbjct: 108 NDVRISSDQKQRLLDNSERMERTGRQLEEGYRVVLETQDIGTQVLQNLNEQRETIKRTRS 167

Query: 96  RHSHTD 101
           R   TD
Sbjct: 168 RLRETD 173

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857557|ref|XP_003704271.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Megachile rotundata]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 2/74 (2%)

Query: 30  VEYFSENS--TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQR 87
           +E   E+S   NI E+Q +RLLDTSE I+R+G+ L+ GYR+ +ETE+I T VLK+L  QR
Sbjct: 99  IEIGREDSWENNITEDQKKRLLDTSERIDRSGRTLQNGYRMVLETEEIGTQVLKELHDQR 158

Query: 88  ETLQRTRTRHSHTD 101
           ET+QR R R   TD
Sbjct: 159 ETIQRGRARLRDTD 172

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026915|gb|EGI67016.1| Vesicle transport through interaction with t-SNAREs-like protein 1A [Acromyrmex echinatior]

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 49/63 (77%)

Query: 39  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
           N+ E+Q +RLLD SE IER+G+ L+ GYR+A+ETE+I + VLK+L  QRET+QR+R R  
Sbjct: 110 NVTEDQRKRLLDASERIERSGRTLQNGYRMALETEEIGSQVLKELHEQRETIQRSRGRLR 169

Query: 99  HTD 101
            TD
Sbjct: 170 ETD 172

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422666|ref|XP_003493243.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Bombus impatiens]

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 30  VEYFSENS--TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQR 87
           +E   E+S   NI E+Q +RLLDTSE+I+RTG+ L+ GYR+ +ETE+I + VLK+L  QR
Sbjct: 99  IEISREDSWENNITEDQKKRLLDTSEQIDRTGRTLQNGYRMVLETEEIGSQVLKELHEQR 158

Query: 88  ETLQRTRTRHSHTD 101
           ET+Q+ R R   TD
Sbjct: 159 ETIQKGRARLRDTD 172

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723947|ref|XP_003400348.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Bombus terrestris]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)

Query: 30  VEYFSENS--TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQR 87
           +E   E+S   NI E+Q +RLLDTSE+I+RTG+ L+ GYR+ +ETE+I + VLK+L  QR
Sbjct: 99  IEISREDSWENNITEDQKKRLLDTSEQIDRTGRTLQNGYRMVLETEEIGSQVLKELHEQR 158

Query: 88  ETLQRTRTRHSHTD 101
           ET+Q+ R R   TD
Sbjct: 159 ETIQKGRARLRDTD 172

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041713|ref|XP_001848598.1| SNARE Vti1a protein [Culex quinquefasciatus] gi|167865258|gb|EDS28641.1| SNARE Vti1a protein [Culex quinquefasciatus]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%)

Query: 36  NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
           +   I E+Q +RLLD SE +ERTG HL+  YR+ +ETE+I T VL+DL  QRET+QR R 
Sbjct: 110 DEIGIQEDQKRRLLDNSERLERTGNHLKDSYRVVLETEQIGTQVLQDLSDQRETIQRARG 169

Query: 96  RHSHTD 101
           R   TD
Sbjct: 170 RLRETD 175

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785300|ref|XP_623763.3| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Apis mellifera]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 2/74 (2%)

Query: 30  VEYFSENS--TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQR 87
           +E   E+S   NI E+Q +RLLDTSE I+RTG+ L+ GYR+ +ETE+I + VLK+L  QR
Sbjct: 99  IEISREDSWENNITEDQKKRLLDTSERIDRTGRTLQNGYRMVLETEEIGSQVLKELHEQR 158

Query: 88  ETLQRTRTRHSHTD 101
           ET+QR R R   TD
Sbjct: 159 ETIQRGRGRLRDTD 172

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778811|gb|EFZ09227.1| hypothetical protein SINV_07175 [Solenopsis invicta]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 50/63 (79%)

Query: 39  NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
           N+ E+Q +RLLD SE+IER+G+ L+ GYR+A+ETE+I + VLK+L  QRET+QR+R +  
Sbjct: 119 NVTEDQRKRLLDASEKIERSGRTLQNGYRMALETEEIGSQVLKELHEQRETIQRSRGKLR 178

Query: 99  HTD 101
            TD
Sbjct: 179 ETD 181

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0260862	230	Vti1 [Drosophila melanogaster	0.492	0.295	0.529	2.7e-13
ZFIN|ZDB-GENE-050809-135	191	vti1a "vesicle transport throu	0.601	0.434	0.4	2.8e-11
UNIPROTKB|E1BYU6	187	VTI1A "Uncharacterized protein	0.521	0.385	0.452	3.5e-11
UNIPROTKB|Q96AJ9	217	VTI1A "Vesicle transport throu	0.521	0.331	0.452	3.5e-11
UNIPROTKB|J9NRK3	217	VTI1A "Uncharacterized protein	0.521	0.331	0.438	4.5e-11
RGD|621490	224	Vti1a "vesicle transport throu	0.557	0.343	0.435	7.4e-11
MGI|MGI:1855699	217	Vti1a "vesicle transport throu	0.521	0.331	0.438	1.5e-10
UNIPROTKB|E1BUX5	232	VTI1B "Uncharacterized protein	0.463	0.275	0.434	7e-09
SGD|S000004810	217	VTI1 "Protein involved in cis-	0.427	0.271	0.423	3.4e-08
MGI|MGI:1855688	232	Vti1b "vesicle transport throu	0.5	0.297	0.388	4.5e-08

FB|FBgn0260862 Vti1 [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 36/68 (52%), Positives = 44/68 (64%)

Query:    34 SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRT 93
             S    +I+ +Q QRLLD SE IERTG  L  GYR+A+ETE++   VL DL  QRETLQ  
Sbjct:   110 SYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQLGAQVLNDLHHQRETLQGA 169

Query:    94 RTRHSHTD 101
             R R   T+
Sbjct:   170 RARLRETN 177

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-050809-135 vti1a "vesicle transport through interaction with t-SNAREs homolog 1A (yeast)" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 34/85 (40%), Positives = 52/85 (61%)

Query:    27 EYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQ 86
             E   E   ++ ++ +E Q   LLD +E +ER+ + LE GY+IA+ETE++  ++L +L S 
Sbjct:    98 EVRNELLGDDGSS-SETQRAHLLDNTERLERSSRRLEAGYQIAVETEQVGQEILANLHSD 156

Query:    87 RETLQRTRTRHSHTDFINLACGSMI 111
             RE +QR+R R   TD  NL   S I
Sbjct:   157 REKIQRSRDRLRETD-ANLGKSSRI 180

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BYU6 VTI1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query:    39 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
             N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R  
Sbjct:   109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLR 168

Query:    99 HTDFINLACGSMI 111
              TD  NL   S I
Sbjct:   169 ETD-ANLGKSSRI 180

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

UNIPROTKB|Q96AJ9 VTI1A "Vesicle transport through interaction with t-SNAREs homolog 1A" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query:    39 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
             N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R  
Sbjct:   109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLR 168

Query:    99 HTDFINLACGSMI 111
              TD  NL   S I
Sbjct:   169 ETD-ANLGKSSRI 180

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0031201 "SNARE complex" evidence=TAS

UNIPROTKB|J9NRK3 VTI1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/73 (43%), Positives = 46/73 (63%)

Query:    39 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
             N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R  
Sbjct:   109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLR 168

Query:    99 HTDFINLACGSMI 111
              TD  NL   S +
Sbjct:   169 ETD-ANLGKSSRV 180

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|621490 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 34/78 (43%), Positives = 47/78 (60%)

Query:    34 SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRT 93
             SEN      E+   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR 
Sbjct:   111 SENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRA 170

Query:    94 RTRHSHTDFINLACGSMI 111
             R R   TD  NL   S I
Sbjct:   171 RERLRETD-ANLGKSSRI 187

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

MGI|MGI:1855699 Vti1a "vesicle transport through interaction with t-SNAREs 1A" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/73 (43%), Positives = 45/73 (61%)

Query:    39 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
             N +E Q   LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R  
Sbjct:   109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLR 168

Query:    99 HTDFINLACGSMI 111
               D  NL   S I
Sbjct:   169 DAD-ANLGKSSRI 180

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

UNIPROTKB|E1BUX5 VTI1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 30/69 (43%), Positives = 47/69 (68%)

Query:    34 SENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQ 91
             +E STN+   QSQR  LL  +E + R  + +E  +RIA ET++I TD++++L  QRE L+
Sbjct:   119 NEQSTNL---QSQRVLLLQGTESLNRASQSIERSHRIAAETDQIGTDIIEELGEQREQLE 175

Query:    92 RTRTRHSHT 100
             RT++R  +T
Sbjct:   176 RTKSRLVNT 184

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

SGD|S000004810 VTI1 "Protein involved in cis-Golgi membrane traffic" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 127 (49.8 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%)

Query:    36 NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTR 94
             N++NI+++Q Q+LL     ++++G  L+   RIA ETE I + ++ DL SQRETL+  R
Sbjct:   108 NASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENAR 166

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IMP

GO:0006896 "Golgi to vacuole transport" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0031201 "SNARE complex" evidence=IPI

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

MGI|MGI:1855688 Vti1b "vesicle transport through interaction with t-SNAREs 1B" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 28/72 (38%), Positives = 48/72 (66%)

Query:    32 YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
             Y  EN  ++N  QSQR  LL  +E + R  + +E  +RIA ET++I T+++++L  QR+ 
Sbjct:   115 YTLENE-HLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQ 173

Query:    90 LQRTRTRHSHTD 101
             L+RT++R  +T+
Sbjct:   174 LERTKSRLVNTN 185

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	1e-08
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	0.004

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTR 96
          E + R    L+  +RIA ET  I   +L+DL SQRETL+R R +
Sbjct: 1  ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNK 44

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 42 EEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTR 96
          ++   R  +  EE+E+         +   E ++I  D+  +LE Q E L R    
Sbjct: 1  QQALAREEERDEELEQLE-------KSIQELKQIFLDMGTELEEQGEQLDRIEDN 48

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG1666|consensus	220		99.91
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.48
KOG3065|consensus	273		97.75
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	97.19
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	97.18
KOG3251|consensus	213		90.88
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	89.01
KOG0812|consensus	311		87.26
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	80.1

>KOG1666|consensus

Probab=99.91  E-value=4.7e-25  Score=180.45  Aligned_cols=90  Identities=36%  Similarity=0.497  Sum_probs=82.6

Q ss_pred             hhhhhhhccCCCCC---CCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccc
Q psy1102          26 SEYHVEYFSENSTN---INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDF  102 (138)
Q Consensus        26 ~~~~~elf~~~~~~---~s~dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs  102 (138)
                      +-++++++.....+   .+++||++||+||++|+||+++|++|+|||.|||+||.+|++||+.|||+|+|||.+|+++|+
T Consensus        98 ~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~  177 (220)
T KOG1666|consen   98 AGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDA  177 (220)
T ss_pred             cchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            55777777744433   589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhHhhh
Q psy1102         103 INLACGSMICQTVW  116 (138)
Q Consensus       103 ~~L~~S~ri~~~~~  116 (138)
                      + +++|++|+.+|-
T Consensus       178 ~-lgkS~kiL~tM~  190 (220)
T KOG1666|consen  178 N-LGKSRKILTTMT  190 (220)
T ss_pred             h-hhHHHHHHHHHH
Confidence            6 999999999885

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.48  E-value=5e-14  Score=93.33  Aligned_cols=63  Identities=32%  Similarity=0.424  Sum_probs=60.3

Q ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhh
Q psy1102          53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW  116 (138)
Q Consensus        53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~  116 (138)
                      |.|.+++++|++|++++.||+++|.+|+.+|..|||+|.+++.+|++++.. +..|++++..|.
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~-l~~s~~~l~~I~   63 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSN-LPKSNSLLKRIS   63 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999997 999999998874

>KOG3065|consensus

Probab=97.75  E-value=0.00012  Score=62.13  Aligned_cols=83  Identities=16%  Similarity=0.083  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhh-------
Q psy1102          40 INEEQSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMI-------  111 (138)
Q Consensus        40 ~s~dQR~rLL~~t-erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri-------  111 (138)
                      ...+..+.|.+.. ..-+.|..+..++.++|.|++..|..++..|..|+|||.+++..+++++.. +..+.+.       
T Consensus        58 ~~~~~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d-~~~~er~l~~l~~~  136 (273)
T KOG3065|consen   58 EEDEEVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVD-LKRAERNLTELKGL  136 (273)
T ss_pred             cchHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHH-HHHHHHHHHHHHHH
Confidence            3344555555555 667788999999999999999999999999999999999999999999998 8888664       


Q ss_pred             hHhhhhhhccCC
Q psy1102         112 CQTVWTWWGGAP  123 (138)
Q Consensus       112 ~~~~~~~w~~~~  123 (138)
                      |..+|+=|...+
T Consensus       137 ~g~~~~p~~~~~  148 (273)
T KOG3065|consen  137 FGLLVKPFKKKR  148 (273)
T ss_pred             hcccCCccccCC
Confidence            455555555444

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=97.19  E-value=0.00078  Score=47.61  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhh
Q psy1102          56 ERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW  116 (138)
Q Consensus        56 erTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~  116 (138)
                      ...++.|.++++++.++-+-|...++.|.+|.++|..+++..+++++. +.+|++++.++.
T Consensus         4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~-l~~s~~ll~~l~   63 (92)
T PF03908_consen    4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSL-LKKSRKLLKKLE   63 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999996 999999888764

>smart00397 t_SNARE Helical region found in SNAREs

Probab=97.18  E-value=0.0011  Score=41.90  Aligned_cols=62  Identities=23%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHh
Q psy1102          52 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQT  114 (138)
Q Consensus        52 terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~  114 (138)
                      ...++...+.|++..+.+.|..+++..|...+..|.+.|.+....++.++.. +.++.+-+.+
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~-~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN-LKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhc
Confidence            3567788889999999999999999999999999999999999999999997 8877765554

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3251|consensus

Probab=90.88  E-value=0.4  Score=39.98  Aligned_cols=53  Identities=17%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchh
Q psy1102          57 RTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSM  110 (138)
Q Consensus        57 rTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~r  110 (138)
                      +-.++|.+|++.+.|.=.-|.+|+++|..||-.|..|+.+++++-.. |+=|+.
T Consensus       126 ~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~nt-LGlSn~  178 (213)
T KOG3251|consen  126 QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNT-LGLSNQ  178 (213)
T ss_pred             HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHH
Confidence            44556777777777777889999999999999999999999998887 888864

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=89.01  E-value=0.81  Score=28.18  Aligned_cols=52  Identities=21%  Similarity=0.141  Sum_probs=43.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhh
Q psy1102          60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMIC  112 (138)
Q Consensus        60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~  112 (138)
                      +.|..-...+.|..+++..|...+..|.|.|.+....+..++.. +.++.+-+
T Consensus         6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~-~~~~~~~l   57 (60)
T cd00193           6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN-VKRANKRL   57 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            45667777788889999999999999999999999999988886 66665433

>KOG0812|consensus

Probab=87.26  E-value=4.8  Score=35.40  Aligned_cols=79  Identities=19%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             CCCCCCCHHHHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhH
Q psy1102          35 ENSTNINEEQSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQ  113 (138)
Q Consensus        35 ~~~~~~s~dQR~rLL~~t-erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~  113 (138)
                      +.+....++|...||+.+ +..+.=...+++..-...|--+|=.+++.=...|+|.+.|..++++++|.. ++-+.+.+.
T Consensus       201 ~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~ln-I~gA~~ell  279 (311)
T KOG0812|consen  201 MGDSSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLN-IEGAHSELL  279 (311)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhh-hHHHHHHHH
Confidence            334455667777777777 666666667777777788888888888888999999999999999999995 777765443


Q ss_pred             h
Q psy1102         114 T  114 (138)
Q Consensus       114 ~  114 (138)
                      +
T Consensus       280 K  280 (311)
T KOG0812|consen  280 K  280 (311)
T ss_pred             H
Confidence            3

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=80.10  E-value=4.3  Score=25.82  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhH
Q psy1102          60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQ  113 (138)
Q Consensus        60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~  113 (138)
                      +.|..-...+.+.-+++..|-.++..|-+.|.+....++.+... +.++..-+.
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~-l~~~~~~l~   56 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN-LKKGNKKLK   56 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34666677778888899999999999999999999999999986 777765433

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
2nps_C	81	Crystal Structure Of The Early Endosomal Snare Comp		3e-09

>pdb|2NPS|C Chain C, Crystal Structure Of The Early Endosomal Snare Complex Length = 81

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 48  LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLAC 107
           LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R   TD  NL  
Sbjct: 7   LLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA-NLGK 65
Query: 108 GSMIC 112
            S I 
Sbjct: 66  SSRIL 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2nps_C	81	Vesicle transport through interaction with T- snar	8e-16
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	5e-13

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 66.4 bits (162), Expect = 8e-16
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 44  QSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTD 101
               LLD +E +ER+ + LE GY+IA+ETE+I  ++L++L   RE +QR R R   TD
Sbjct: 3   MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETD 60

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 59.0 bits (143), Expect = 5e-13
 Identities = 17/47 (36%), Positives = 34/47 (72%)

Query: 55  IERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTD 101
           + R  + +E  +RIA ET++I T+++++L  QR+ L+RT++R  +T+
Sbjct: 4   MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTN 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2nps_C	81	Vesicle transport through interaction with T- snar	99.89
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.79
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.59
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	99.28
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	98.62
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	98.57

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.89  E-value=2.5e-24  Score=150.39  Aligned_cols=74  Identities=39%  Similarity=0.602  Sum_probs=71.6

Q ss_pred             HHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhh
Q psy1102          43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWT  117 (138)
Q Consensus        43 dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~  117 (138)
                      +||++||+++++|++|+++|++|+++|+|||+||.+|+++|++|||+|++++++|+++|++ +++|++||..|..
T Consensus         2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~-l~~s~k~l~~M~r   75 (81)
T 2nps_C            2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDAN-LGKSSRILTGMLR   75 (81)
T ss_dssp             TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhH-HHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999997 9999999999864

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.79  E-value=2.3e-20  Score=125.49  Aligned_cols=63  Identities=30%  Similarity=0.481  Sum_probs=58.1

Q ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhh
Q psy1102          53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW  116 (138)
Q Consensus        53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~  116 (138)
                      ++|++|+++|++|+++|.|||+||.+|+.+|++|||+|+|++++|+++|++ +++|++++..|.
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~-l~~s~k~L~~m~   64 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNEN-LSKSRKILRSMS   64 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC--
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhH-HHHHHHHHHhhc
Confidence            689999999999999999999999999999999999999999999999997 999999998874

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.59  E-value=1.3e-15  Score=106.00  Aligned_cols=69  Identities=12%  Similarity=0.070  Sum_probs=64.7

Q ss_pred             HHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhh
Q psy1102          48 LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWT  117 (138)
Q Consensus        48 LL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~  117 (138)
                      ....++++++|+++++++.++|.|||+||.+|+.+|+.|||+|.|++.+|+++|.+ +++|.+++..|.|
T Consensus        11 ~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~-l~~a~k~L~~m~k   79 (79)
T 1n7s_C           11 QRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD-MKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH-HHHHHHHHhhhcC
Confidence            33556999999999999999999999999999999999999999999999999997 9999999998865

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=99.28  E-value=1.4e-12  Score=84.73  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102          62 LETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV  115 (138)
Q Consensus        62 L~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~  115 (138)
                      -.++.++|.|||++|..++.+|+.|||||.|+++.|+++|++ +++|.+++..|
T Consensus         2 t~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~-l~~a~k~L~~m   54 (54)
T 1nhl_A            2 TRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD-MRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH-HHHHHHHHhcC
Confidence            468999999999999999999999999999999999999997 99999988754

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=98.62  E-value=4.5e-08  Score=68.92  Aligned_cols=63  Identities=11%  Similarity=0.077  Sum_probs=57.1

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102          52 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV  115 (138)
Q Consensus        52 terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~  115 (138)
                      ...-+.|.++..++.++|.|++++|..++..|+.|+|+|.|++..|+++|.. ++.|-+.+..+
T Consensus        19 ~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d-l~~Aek~L~~L   81 (83)
T 1l4a_C           19 NQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD-MKDAEKNLEGM   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSGGGCTTC-
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence            3677889999999999999999999999999999999999999999999997 99887766543

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.57  E-value=6.3e-08  Score=66.20  Aligned_cols=62  Identities=11%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102          53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV  115 (138)
Q Consensus        53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~  115 (138)
                      ..-+.|.++..++.++|.|+|++|..++..|+.|+|+|.|++..|+++|.. +..+.+.+..+
T Consensus         5 ~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~-~k~aek~l~~L   66 (70)
T 3b5n_C            5 FTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQ-NKVADEKVAEL   66 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            345778899999999999999999999999999999999999999999997 88776655443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00