Psyllid ID: psy11137


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-
NTRLPSGAPSPSHQKRISRTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQTPSATPNANAAASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL
cccccccccccccccccccccEEEEcccccccHHHcccHHHHHHcccccccEEEEEEEccccccccEEEEccccccccccccEEEEEEEEccccccccccccccHHHHHHHccccEEEEEEcccccEEEEccccccccccccEEEEccccccccccEEHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEcccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccEEccccccccEEEEEEccccccccccccccccccHHHHccccccccccccccccc
cccccccccccccccccccccEEEEccccccEEEEEcccHHHHcccccccccEEEEEEcccccEEEEEEEccHHHccHcHHcEEEEEEEcccccEEccccccccHHHHHHHccEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccHHHHHHHHHHcccccHHHHHHHHHccccEEccccHHHHHHHHccccccccccccccccccccccHccccccccHHHcccccccHHHHHHHHHHHHHHHcccccccccHcccccccccccHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccHccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHccHHHHHccccccccEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEccccccccccccEEEEccccccccccEEcHHHHHHHHHHcccccHHHHHHHHHccccEEccccHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHccccccccccccEEcccccccHHccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccHHHHHccccHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHccccccccccccccc
ntrlpsgapspshqkrisrtpiiiipaanTSLITMFVTTEAkraagskrenEILIQRskgdgttvpyrvidnplklartdwDRVVAVFVMgpawqfkgwpwdanpveiFSKNLAVSRNFiqttscnqiifgefswpkdvntnylHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAasnipvvprpyrKDILAYLNgevatsasidktapleiptqvkrvgteeletpakkprledsVHLQHVKQQLAARldapkeasvtldnikfgpgslteAMSVEKIAAIKAKRLAKKRTTIKrvatdtdgtdigdkdaekdNLKDMLAFDVDVTKNIISRERQWRTrtsifhtsgkiFSKNIFAILQSIKAreegrhrpapptplvpstpvnksvpqpivynrydqerfiksreetegfkidtmgtyhgmtlksvtegntprkpaltpstpahqtpsatpnanaaaspapyninkkEIIERENQIIfgefswpkdvntnylHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAasnipvvprpyrKDILAYLNgevatsasidktapleiptqvkrvgteeletpakkprledsVHLQHVKQQLAARldapkeasvtldnikfgpgslteAMSVEKIAAIKAKRLAKKRTTIKrvatdtdgtdigdkdaekdNLKDMLAFDVDVTKNIISRERQWRTrtsifhtsgkiFSKNIFAILQSIKAreegrhrpapptplvpstpvnksvpqpivynrydqerFIKSreetegfkidtmgkgHMFVIStqsvstepqcpfrcicfrttVRCMFQhleyvprvsndttil
ntrlpsgapspshqkrisrtpiIIIPAANTSLITMFVTTEakraagskreneiliqrskgdgttvpyrVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAaasnipvvprpyRKDILAYLNGEVatsasidktapleiptqvkrvgteeletpakkprledsvHLQHVKQQLAARLDAPKEASVTldnikfgpgslteamSVEKIAAIKAkrlakkrttikrvatdtdgtdigdkdaekdnlkdmlafdvdvtkniisrerqwrtrtsifhtsgkifskNIFAILQSIKAREEgrhrpapptplvpstpvnksvpqpivynrydqerfiksreetegfkidtmgtyHGMTLKSVTEGNTPRKPALTPSTPAHQTPsatpnanaaaspaPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAaasnipvvprpyRKDILAYLNGEVatsasidktapleiptqvkrvgteeletpakkprledsvHLQHVKQQLAARLDAPKEASVTldnikfgpgslteamSVEKIAAIKAkrlakkrttikrvatdtdgtdigdkdaekdnlkdmlafdvdvtkniisrerqwrtrtsifhtsgkifskNIFAILQSIKAREEgrhrpapptplvpstpvnksvpqpIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTqsvstepqcPFRCICFRTTVRCMFQhleyvprvsndttil
NTRLPSGAPSPSHQKRISRTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEkiaaikakrlakkrttikrVAtdtdgtdigdkdAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRpapptplvpstpvNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQtpsatpnanaaaspapYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEkiaaikakrlakkrttikrVAtdtdgtdigdkdAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRpapptplvpstpvNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL
*******************TPIIIIPAANTSLITMFVTTEA***********ILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASI*******************************************************LDNIKFG******AMSVEKIAAIKAKRL****************************LKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSI*****************************IVYNRYDQERFI*******GFKIDTMGTYHG*******************************************INKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASI*******************************************************LDNIKFG******AMSVEKIAAIKAKRL****************************LKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSI*****************************IVYNRYDQERFIK****TEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRV*******
**********************IIIPAANTSLITM*************************DGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV**************************************************************************************************************************AFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAIL******************************************************IDTM******************************************************IERENQIIFGEFSWPKDVNTNYLHY*******VKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV**************************************************************************************************************************AFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAI*******************************************************IDTMGKG************************TTVRCMFQHLEYVPRVS******
***************RISRTPIIIIPAANTSLITMFVTTEA********ENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPA********************ASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL
******************RTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV******************************************H*K*QL*ARLD****A*V******F*PGSLTEAMSVEKIAAIKAKRLAKKRT********************KDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREE*********************P*PIVYNRYDQERFIKSREETEGFKIDTMGTYHGMT*********************************AASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV***********************************************L**RLD**KEASV*LDN*K**PGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVAT**************DNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREE**************************YN*YDQERFIKSREETEGFKIDTMGKGHMFVIST***STEPQCPFRCICFRTTVRCMFQHLEYVPRVSN*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NTRLPSGAPSPSHQKRISRTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQTPSATPNANAAASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query831 2.2.26 [Sep-21-2011]
Q5ZLM0531 Parafibromin OS=Gallus ga yes N/A 0.373 0.583 0.564 8e-93
Q8JZM7531 Parafibromin OS=Mus muscu yes N/A 0.373 0.583 0.567 2e-92
Q6P1J9531 Parafibromin OS=Homo sapi yes N/A 0.373 0.583 0.567 2e-92
Q4V8C8531 Parafibromin OS=Rattus no yes N/A 0.373 0.583 0.564 1e-91
A1KZ92 1463 Peroxidasin-like protein no N/A 0.054 0.030 0.413 0.0001
A4IGL7 1457 Peroxidasin OS=Xenopus tr no N/A 0.038 0.021 0.687 0.0001
Q3UQ28 1475 Peroxidasin homolog OS=Mu no N/A 0.038 0.021 0.656 0.0002
Q92626 1479 Peroxidasin homolog OS=Ho no N/A 0.038 0.021 0.656 0.0002
>sp|Q5ZLM0|CDC73_CHICK Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1 Back     alignment and function desciption
 Score =  342 bits (877), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 193/342 (56%), Positives = 241/342 (70%), Gaps = 32/342 (9%)

Query: 126 NQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASN 185
           +++IFGEFSWPK+V TNY+ + + +EG  ++YYTL+ +LF L N+ L+H  YVR+AA  N
Sbjct: 23  DEVIFGEFSWPKNVKTNYVIWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAATEN 82

Query: 186 IPVVPRPYRKDILAYLNGEVATSASIDKTAPLEI----PTQVKRVGTEELETPAKKPRLE 241
           IPVV RP RKD+LAYLNGE +TS+SID++APLEI     TQVKR   +E+   AKKPR+E
Sbjct: 83  IPVVRRPDRKDLLAYLNGETSTSSSIDRSAPLEIGLQRSTQVKR-AADEILAEAKKPRIE 141

Query: 242 DSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTI 301
           D   ++  K++LAARL+  KE  V  + I+    SL+EAMSVEKIAAIKAK +AKKR+TI
Sbjct: 142 DEECVRLDKERLAARLEGHKEGIVQTEQIR----SLSEAMSVEKIAAIKAKIMAKKRSTI 197

Query: 302 KRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKN 361
           K        TD+ D D      +  +  +VDVT++I+SRER WRTRT+I  ++GK F+KN
Sbjct: 198 K--------TDLDD-DITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQSTGKNFAKN 248

Query: 362 IFAILQSIKAREEGR---HRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEG 418
           IFAILQS+KAREEGR    RPAP T     T  NK  P P  YNRYDQERF K +EETEG
Sbjct: 249 IFAILQSVKAREEGRAPEQRPAPNTAPTDPTLRNKQ-PIPAAYNRYDQERF-KGKEETEG 306

Query: 419 FKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQTPSATP 460
           FKIDTMGTYHGMTLKSVTEG + RK          QTP+A P
Sbjct: 307 FKIDTMGTYHGMTLKSVTEGASARK---------TQTPAAQP 339




Tumor suppressor probably involved in transcriptional and post-transcriptional control pathways. May be involved in cell cycle progression through the regulation of cyclin D1/PRAD1 expression. Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3).
Gallus gallus (taxid: 9031)
>sp|Q8JZM7|CDC73_MOUSE Parafibromin OS=Mus musculus GN=Cdc73 PE=2 SV=1 Back     alignment and function description
>sp|Q6P1J9|CDC73_HUMAN Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1 Back     alignment and function description
>sp|Q4V8C8|CDC73_RAT Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV=1 Back     alignment and function description
>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3 Back     alignment and function description
>sp|A4IGL7|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1 Back     alignment and function description
>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2 Back     alignment and function description
>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query831
242014565505 parafibromin, putative [Pediculus humanu 0.393 0.647 0.662 1e-120
350411288525 PREDICTED: parafibromin-like [Bombus imp 0.397 0.628 0.665 1e-118
322796360525 hypothetical protein SINV_03909 [Solenop 0.398 0.630 0.662 1e-118
307196389526 Parafibromin [Harpegnathos saltator] 0.400 0.633 0.658 1e-117
307171070526 Parafibromin [Camponotus floridanus] 0.399 0.631 0.662 1e-117
328709727522 PREDICTED: parafibromin-like [Acyrthosip 0.393 0.626 0.642 1e-117
332028937526 Parafibromin [Acromyrmex echinatior] 0.400 0.633 0.658 1e-117
340729619525 PREDICTED: parafibromin-like [Bombus ter 0.375 0.594 0.687 1e-117
380020635525 PREDICTED: LOW QUALITY PROTEIN: parafibr 0.375 0.594 0.685 1e-117
66514122525 PREDICTED: parafibromin [Apis mellifera] 0.375 0.594 0.685 1e-117
>gi|242014565|ref|XP_002427957.1| parafibromin, putative [Pediculus humanus corporis] gi|212512456|gb|EEB15219.1| parafibromin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/350 (66%), Positives = 267/350 (76%), Gaps = 23/350 (6%)

Query: 126 NQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASN 185
            QIIFGEFSWPK+V TNYL + S ++GA K+YYTLECLLF LKN+ L H  YVR+AAA  
Sbjct: 23  GQIIFGEFSWPKNVKTNYLIWGSGKDGAPKEYYTLECLLFILKNVQLTHAVYVRQAAAEL 82

Query: 186 IPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVH 245
           IP V RP RKD+L YLNGE +TSASIDK+APLEIPTQVKR   E LE+ +KKPR E++  
Sbjct: 83  IPAVRRPDRKDLLTYLNGETSTSASIDKSAPLEIPTQVKRTADESLESVSKKPRFEET-Q 141

Query: 246 LQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVA 305
           +Q VK+QLAARLDAPKEASVT+DNIK    SL+EAMSVEKIAAIKAKRLAKKRTTIK   
Sbjct: 142 VQKVKEQLAARLDAPKEASVTVDNIK----SLSEAMSVEKIAAIKAKRLAKKRTTIK--- 194

Query: 306 TDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAI 365
              D   +G       +LK ML FDVDVTK+I+SRERQWRTRT+I  ++GK+F+KNIFAI
Sbjct: 195 -GNDDIGLG------SDLKVMLDFDVDVTKDIVSRERQWRTRTTILQSAGKVFAKNIFAI 247

Query: 366 LQSIKAREEGRHRPAPPTPLV-PSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTM 424
           LQSIKAREEGRHRP  P P+V P     +  PQP VYNRYDQERFI+ +EETEGF+IDTM
Sbjct: 248 LQSIKAREEGRHRPPVPAPMVTPRATPARPAPQPAVYNRYDQERFIRQKEETEGFQIDTM 307

Query: 425 GTYHGMTLKSVTEGNTPRKPALTPSTPAHQT------PSATPNANAAASP 468
           GTYHGMTLKSVTEG  P+K A TP  P  QT      PS TPN   + +P
Sbjct: 308 GTYHGMTLKSVTEGTQPKK-APTPMPPVVQTPSPSLRPSTTPNKKVSRTP 356




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411288|ref|XP_003489299.1| PREDICTED: parafibromin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322796360|gb|EFZ18901.1| hypothetical protein SINV_03909 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307196389|gb|EFN77978.1| Parafibromin [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307171070|gb|EFN63113.1| Parafibromin [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328709727|ref|XP_001951247.2| PREDICTED: parafibromin-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332028937|gb|EGI68955.1| Parafibromin [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340729619|ref|XP_003403095.1| PREDICTED: parafibromin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380020635|ref|XP_003694187.1| PREDICTED: LOW QUALITY PROTEIN: parafibromin-like [Apis florea] Back     alignment and taxonomy information
>gi|66514122|ref|XP_395835.2| PREDICTED: parafibromin [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query831
FB|FBgn0037657538 hyx "hyrax" [Drosophila melano 0.400 0.618 0.507 4.5e-82
ZFIN|ZDB-GENE-040426-1309521 cdc73 "cell division cycle 73, 0.368 0.587 0.510 3.5e-75
UNIPROTKB|Q5ZLM0531 CDC73 "Parafibromin" [Gallus g 0.369 0.578 0.507 2.2e-73
UNIPROTKB|E1BPQ8531 CDC73 "Uncharacterized protein 0.369 0.578 0.510 7.5e-73
UNIPROTKB|A2SXS7531 HRPT2 "Uncharacterized protein 0.369 0.578 0.510 7.5e-73
UNIPROTKB|Q6P1J9531 CDC73 "Parafibromin" [Homo sap 0.369 0.578 0.510 7.5e-73
MGI|MGI:2384876531 Cdc73 "cell division cycle 73, 0.369 0.578 0.510 7.5e-73
RGD|1311766531 Cdc73 "cell division cycle 73" 0.369 0.578 0.507 3.2e-72
WB|WBGene00018064517 F35F11.1 [Caenorhabditis elega 0.131 0.210 0.442 3.8e-18
TAIR|locus:2077076415 PHP "PLANT HOMOLOGOUS TO PARAF 0.107 0.214 0.401 2.4e-07
FB|FBgn0037657 hyx "hyrax" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 805 (288.4 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 180/355 (50%), Positives = 228/355 (64%)

Query:   103 ANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLEC 162
             A+P+ +  +     +  ++  S  QIIFGEFSWPK V TNYL Y S ++GA ++YYTLEC
Sbjct:     2 ADPLSLLRQYNINKKEIVERDS--QIIFGEFSWPKSVKTNYLKYGSGKKGAPREYYTLEC 59

Query:   163 LLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQ 222
             LL+ LKN+ L H+ YVR+ AA +IP V RP RK++LAYLNGE  T ASIDK+APLEIPTQ
Sbjct:    60 LLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNGETPTCASIDKSAPLEIPTQ 119

Query:   223 VKRVGTEE---LETPAKKPRLEDSVHLQHVKQQLAARLDA-PKEASVTLDNIKFGPGSLT 278
             VKR    E   +E  AKK R E++  +Q V++QLAAR D   KE +V +DNIK    SL+
Sbjct:   120 VKRAAEGEPSSVEVAAKKARFEET-QVQKVREQLAARWDVNQKETAVNMDNIK----SLS 174

Query:   279 EAMSVEXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXXAEKDNLKDMLAFDVDVTKNII 338
             E MSVE                                 A   +L+ +L +DVD TK+II
Sbjct:   175 ETMSVEKIAAIKAKRLANKRTTIKRT---------DNDEAMGTDLRAILDYDVDSTKDII 225

Query:   339 SRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRXXXXXXXXXXXXXNKSVPQP 398
             SRERQWRTRTSI  ++GKIF+KNIFA+LQ IKAREEGR+R               + PQP
Sbjct:   226 SRERQWRTRTSILQSTGKIFAKNIFAMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQP 285

Query:   399 IV--YNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTP 451
              +  YNRYDQERF + +EETEGFKIDT+GTYHGM+LKSVTEG+  ++ A   + P
Sbjct:   286 QLSQYNRYDQERFNRQKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLP 340


GO:0016055 "Wnt receptor signaling pathway" evidence=IMP
GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0008407 "chaeta morphogenesis" evidence=IMP
GO:0001745 "compound eye morphogenesis" evidence=IMP
GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP
GO:0016593 "Cdc73/Paf1 complex" evidence=IDA
GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IGI;IMP
GO:0008134 "transcription factor binding" evidence=IPI
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP
GO:0043234 "protein complex" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
ZFIN|ZDB-GENE-040426-1309 cdc73 "cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLM0 CDC73 "Parafibromin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPQ8 CDC73 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A2SXS7 HRPT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P1J9 CDC73 "Parafibromin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2384876 Cdc73 "cell division cycle 73, Paf1/RNA polymerase II complex component" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311766 Cdc73 "cell division cycle 73" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00018064 F35F11.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2077076 PHP "PLANT HOMOLOGOUS TO PARAFIBROMIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8JZM7CDC73_MOUSENo assigned EC number0.56720.37300.5838yesN/A
Q5ZLM0CDC73_CHICKNo assigned EC number0.56430.37300.5838yesN/A
Q4V8C8CDC73_RATNo assigned EC number0.56430.37300.5838yesN/A
Q6P1J9CDC73_HUMANNo assigned EC number0.56720.37300.5838yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query831
pfam05179273 pfam05179, CDC73, RNA pol II accessory factor, Cdc 1e-36
pfam05179273 pfam05179, CDC73, RNA pol II accessory factor, Cdc 1e-18
pfam05179 273 pfam05179, CDC73, RNA pol II accessory factor, Cdc 2e-11
COG5157362 COG5157, CDC73, RNA polymerase II assessory factor 4e-08
>gnl|CDD|113931 pfam05179, CDC73, RNA pol II accessory factor, Cdc73 family Back     alignment and domain information
 Score =  139 bits (351), Expect = 1e-36
 Identities = 61/121 (50%), Positives = 73/121 (60%), Gaps = 18/121 (14%)

Query: 4   LPSGAPSPSHQKRISRTPIIIIPAANTSLITM-----------FVTTEAKRAAGSKRENE 52
                PS    K+ SR PII+IP+A +SLITM           +V  +AKR  G ++   
Sbjct: 105 DKQNGPS----KKGSRDPIILIPSAASSLITMYNIKDFLQEGKYVPVDAKRKQGCQKPEL 160

Query: 53  ILIQRSKG--DGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFS 110
           I IQR        TV YRV+DNP KL   DWDRVVAVFV GPAWQFKGWPW+ +PV+IF 
Sbjct: 161 IAIQRKFSRSKFVTVRYRVVDNPEKLKPDDWDRVVAVFVTGPAWQFKGWPWN-SPVDIFH 219

Query: 111 K 111
           K
Sbjct: 220 K 220


Length = 273

>gnl|CDD|113931 pfam05179, CDC73, RNA pol II accessory factor, Cdc73 family Back     alignment and domain information
>gnl|CDD|113931 pfam05179, CDC73, RNA pol II accessory factor, Cdc73 family Back     alignment and domain information
>gnl|CDD|227486 COG5157, CDC73, RNA polymerase II assessory factor [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 831
KOG3786|consensus395 100.0
PF05179273 CDC73: RNA pol II accessory factor, Cdc73 family; 100.0
KOG3786|consensus 395 100.0
COG5157362 CDC73 RNA polymerase II assessory factor [Transcri 99.94
COG5157362 CDC73 RNA polymerase II assessory factor [Transcri 99.63
PF05179 273 CDC73: RNA pol II accessory factor, Cdc73 family; 99.03
smart0001333 LRRNT Leucine rich repeat N-terminal domain. 96.63
PF0146228 LRRNT: Leucine rich repeat N-terminal domain; Inte 95.36
KOG4237|consensus498 86.58
>KOG3786|consensus Back     alignment and domain information
Probab=100.00  E-value=5.8e-43  Score=374.28  Aligned_cols=219  Identities=52%  Similarity=0.732  Sum_probs=186.7

Q ss_pred             ehhhHHHHHhccCCchhHHHHHHHhcCCCcccCCchhhHHHHhcCCCCCCCccCcCCCCCcccccccccccccCCcCCCC
Q psy11137        159 TLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKP  238 (831)
Q Consensus       159 tLesllf~lkn~~l~H~~Yvr~A~a~~ip~V~rpDRkdllayL~Ge~~~~~~id~~aple~~~~~~r~~~~e~~~~~kk~  238 (831)
                      ||||||||+||++|+|++||+.+++++||+|+|||||+||.||||                             +.+|+|
T Consensus         1 tl~sll~l~kn~~~~h~v~l~~~~~~s~~~v~~~drk~lL~~~ng-----------------------------~~~~~~   51 (395)
T KOG3786|consen    1 TLDSLLLLLKNVALKHDVYLRASAEESIPVVTRPDRKELLFYLNG-----------------------------PIAKKP   51 (395)
T ss_pred             ChhHHHHHHHHHhhcCCeeeecccccCCCccccccHHHHHhhcCC-----------------------------hhhccC
Confidence            799999999999999999999999999999999999999999999                             136889


Q ss_pred             CcchhhhHHHHHHHHHhhhcCCCcccccccccccCCCCccccccHHHHHHHHHHHHhhhcccccccccCCCCCCCCCccc
Q psy11137        239 RLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDA  318 (831)
Q Consensus       239 r~e~~~~~~~~k~~l~~~l~~~~~~~v~~~~ir~~~~sLse~msvEkIAaiKaKrla~Kr~tIk~~d~~~~~~~~~~~~~  318 (831)
                      |.|+. +++.+              .|....|+    +|+++|++|+||+||||++++|+++|+..+-    ++    .+
T Consensus        52 ~~e~~-~~~~d--------------~~~~~~i~----~l~~amsd~~ia~ykak~~~~~~~~~k~~~~----~d----~i  104 (395)
T KOG3786|consen   52 RTEET-ELEND--------------SVFDLRIK----SLSEAMSDESIAEYKAKCLAKKRTNIKFLVR----TD----LI  104 (395)
T ss_pred             Cccce-eeeec--------------ccccHHHH----HHHHHhccHHHHHHhHHHHHhcccchhcccc----hH----HH
Confidence            99888 54422              25577888    9999999999999999999999999987652    11    12


Q ss_pred             ccccchhhhchhhhhhhhhHhhhccccccccccccCCcchhHhHHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCCCCC
Q psy11137        319 EKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPP---TPLVPSTPVNKSV  395 (831)
Q Consensus       319 ~~~~~r~~ld~d~d~tr~i~sRER~wRtR~svLqs~~k~F~~nil~iL~svk~ree~~~~~~~~---~~p~~~~~~~~~~  395 (831)
                      .  .+....++|++++++|++|||+||||+++||+.+++|+||++++|+.++.+++++.....+   -+|.++ .....+
T Consensus       105 ~--~~~g~~~~d~d~~~~i~k~Er~~rt~~~il~~~~~~~~k~~~s~l~~~~~~~e~~~~v~~~~~~~~~v~~-~~~~~~  181 (395)
T KOG3786|consen  105 V--WLKGNTESDVDLIRDILKRERPWRTRTTILQSTGREFVKNIFSKLQEVKAREEDRKTVEEHNPNFMPVDP-AIRIDG  181 (395)
T ss_pred             H--HhhCCccccHHHHhhhhccCCccchHHHHHhhcchhhhhhHHHHhhccceeeecCcccccccccccCCCH-HHhcCC
Confidence            2  2233679999999999999999999999999999999999999999999999999865432   345544 445677


Q ss_pred             CCCcccccchhhhhcccccccCCeeecccccccccccceecccCCCCCC
Q psy11137        396 PQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKP  444 (831)
Q Consensus       396 ~~p~~YnRYdQERF~~k~eet~gF~Idt~Gt~hg~~lksv~~G~~~~~~  444 (831)
                      |.|+.||||+||||.       .|+||++|| |||+|+++++|+..+..
T Consensus       182 p~~~~y~ryi~~rf~-------~~~~~~~Gs-~g~~l~~~~e~~~~~~~  222 (395)
T KOG3786|consen  182 PKPIDYNRYIQERFL-------SFGIDTYGS-HGMKLKPVHEGARKRRK  222 (395)
T ss_pred             ccchhhhhhhhhhhh-------ccccccccc-ccccCCccchhhhhccc
Confidence            779999999999993       299999999 99999999999965544



>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme Back     alignment and domain information
>KOG3786|consensus Back     alignment and domain information
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription] Back     alignment and domain information
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription] Back     alignment and domain information
>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme Back     alignment and domain information
>smart00013 LRRNT Leucine rich repeat N-terminal domain Back     alignment and domain information
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>KOG4237|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query831
4dm4_A167 The Conserved Domain Of Yeast Cdc73 Length = 167 4e-04
3v46_A170 Crystal Structure Of Yeast Cdc73 C-Terminal Domain 7e-04
>pdb|4DM4|A Chain A, The Conserved Domain Of Yeast Cdc73 Length = 167 Back     alignment and structure

Iteration: 1

Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 19 RTPIIIIPAANTSLITMF----VTTEAK----RAAGSKRENEILIQRSKGDGTTVPYR-- 68 + PII+IP+A +S++T+ E+K R S + I+++ + + P R Sbjct: 2 KDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPSVPNGLVNIEKN-FERISRPIRFI 60 Query: 69 VIDNPLKLARTD-WDRVVAVFVMGPAWQFKGWPWDANPVEIFSK 111 ++DN + + WDRVVA+F G WQF + W++ P E+F + Sbjct: 61 IVDNTRMFTKPEYWDRVVAIFTTGHTWQFNNYQWNS-PQELFQR 103
>pdb|3V46|A Chain A, Crystal Structure Of Yeast Cdc73 C-Terminal Domain Length = 170 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query831
3v46_A170 Cell division control protein 73; RAS-like fold, n 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
2v9t_B 220 SLIT homolog 2 protein N-product; structural prote 1e-04
2v70_A 220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 4e-04
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 5e-04
1xku_A 330 Decorin; proteoglycan, leucine-rich repeat, struct 5e-04
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} Length = 170 Back     alignment and structure
 Score =  120 bits (302), Expect = 1e-31
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%)

Query: 7   GAPSPSHQKRISRTPIIIIPAANTSLITM-----------FVTTEAKRAAGSKRENEILI 55
           G    +      + PII+IP+A +S++T+           +V         S     + I
Sbjct: 1   GIDPFTSSGGPRKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLP---SVPNGLVNI 57

Query: 56  QRS-KGDGTTVPYRVIDNPLKLARTD-WDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNL 113
           +++ +     + + ++DN     + + WDRVVA+F  G  WQF  + W+ +P E+F +  
Sbjct: 58  EKNFERISRPIRFIIVDNTRMFTKPEYWDRVVAIFTTGHTWQFNNYQWN-SPQELFQRCK 116

Query: 114 AVSRNFIQTTSCNQI 128
               +F   +    +
Sbjct: 117 GYYFHFAGDSVPQHV 131


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query831
3v46_A170 Cell division control protein 73; RAS-like fold, n 100.0
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A Back     alignment and structure
Probab=100.00  E-value=5e-36  Score=294.87  Aligned_cols=142  Identities=24%  Similarity=0.489  Sum_probs=117.6

Q ss_pred             CCCCCCCEEEecCCccceeecccchHHHHHc-------C-CCCCCeEEEEeecCC-CceeeEEEEeCCCCCC-CCCCCeE
Q psy11137         15 KRISRTPIIIIPAANTSLITMFVTTEAKRAA-------G-SKRENEILIQRSKGD-GTTVPYRVIDNPLKLA-RTDWDRV   84 (831)
Q Consensus        15 kr~~k~PIIIVPss~TSLITL~Ni~d~l~~~-------g-~~~~~~V~I~R~~~~-g~~v~yrVVDn~~~f~-pedWdRV   84 (831)
                      ....++||||||+|+||||||+|+++||+..       . ....++|+|+|+... +.+++|+||||+.+|+ ||||+||
T Consensus         9 ~~~~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~~~~~~v~I~r~~~~~~~~~~f~VVD~~~~~tkpe~W~RV   88 (170)
T 3v46_A            9 GGPRKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPSVPNGLVNIEKNFERISRPIRFIIVDNTRMFTKPEYWDRV   88 (170)
T ss_dssp             --CCSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCCCTTSEEEEEECCTTSSSCEEEEEESSSTTCCSGGGGGGE
T ss_pred             CCCCCCCEEEECCCccchhhHHHHHHHHhcCeecChhhcccCCCCeEEEEEecCCCCcceEEEEEEChHHcCCccCCceE
Confidence            3456899999999999999999999999753       1 123467889888653 6899999999999995 8999999


Q ss_pred             EEEEeeCCcccccCCCCCCChHHHhhhcceeEEeeeccCCcceeEeccccccccccc-ceeEeeccCCCCccceeehhhH
Q psy11137         85 VAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNT-NYLHYQSSREGAVKKYYTLECL  163 (831)
Q Consensus        85 VAVFvtGq~WQFK~wpw~~dP~eLF~~V~Gfyv~f~~de~ds~VIFGd~a~pk~VkT-ny~~~~~~~~g~~~eyYtLesl  163 (831)
                      |||||+|++||||+|||+ +|++||+++||||++|+++.           .|.+|+. |..+....|.   +-+=.-+++
T Consensus        89 VAVFv~G~~WQFk~w~~~-~P~elF~~v~Gf~~~~~~~~-----------~p~~v~~WnV~~l~l~r~---kRh~D~~~~  153 (170)
T 3v46_A           89 VAIFTTGHTWQFNNYQWN-SPQELFQRCKGYYFHFAGDS-----------VPQHVQQWNVEKVELDKN---KRFKDVEVV  153 (170)
T ss_dssp             EEEECCSCGGGGTTSSSC-SHHHHHHHSEEEEEEETTSC-----------CCHHHHHSSEEEEEECSS---CCTTHHHHH
T ss_pred             EEEEeECchhhcCCCCCC-ChHHHhccceEEEEEecCCC-----------CChhHhhCCCEEEEeCcC---ccccHHHHH
Confidence            999999999999999999 99999999999999999888           5556665 6666666664   344567888


Q ss_pred             HHHHhccC
Q psy11137        164 LFFLKNIG  171 (831)
Q Consensus       164 lf~lkn~~  171 (831)
                      ..||+.++
T Consensus       154 ~~FW~~Le  161 (170)
T 3v46_A          154 RYFWHSLE  161 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 831
d1xkua_ 305 c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 5e-05
d1w8aa_ 192 c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga 8e-05
d1ozna_ 284 c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept 8e-04
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]
 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 798 PQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
           P CPFRC C    V+C    LE VP+ +  DT +L
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL 36


>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00