Psyllid ID: psy11137

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-

NTRLPSGAPSPSHQKRISRTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQTPSATPNANAAASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL

cccccccccccccccccccccEEEEcccccccHHHcccHHHHHHcccccccEEEEEEEccccccccEEEEccccccccccccEEEEEEEEccccccccccccccHHHHHHHccccEEEEEEcccccEEEEccccccccccccEEEEccccccccccEEHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEcccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccEEccccccccEEEEEEccccccccccccccccccHHHHccccccccccccccccc

cccccccccccccccccccccEEEEccccccEEEEEcccHHHHcccccccccEEEEEEcccccEEEEEEEccHHHccHcHHcEEEEEEEcccccEEccccccccHHHHHHHccEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccHHHHHHHHHHcccccHHHHHHHHHccccEEccccHHHHHHHHccccccccccccccccccccccHccccccccHHHcccccccHHHHHHHHHHHHHHHcccccccccHcccccccccccHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccHccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHccHHHHHccccccccEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEccccccccccccEEEEccccccccccEEcHHHHHHHHHHcccccHHHHHHHHHccccEEccccHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHccccccccccccEEcccccccHHccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccHHHHHccccHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHccccccccccccccc

ntrlpsgapspshqkrisrtpiiiipaanTSLITMFVTTEAkraagskrenEILIQRskgdgttvpyrvidnplklartdwDRVVAVFVMgpawqfkgwpwdanpveiFSKNLAVSRNFiqttscnqiifgefswpkdvntnylHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAasnipvvprpyrKDILAYLNgevatsasidktapleiptqvkrvgteeletpakkprledsVHLQHVKQQLAARldapkeasvtldnikfgpgslteAMSVEKIAAIKAKRLAKKRTTIKrvatdtdgtdigdkdaekdNLKDMLAFDVDVTKNIISRERQWRTrtsifhtsgkiFSKNIFAILQSIKAreegrhrpapptplvpstpvnksvpqpivynrydqerfiksreetegfkidtmgtyhgmtlksvtegntprkpaltpstpahqtpsatpnanaaaspapyninkkEIIERENQIIfgefswpkdvntnylHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAasnipvvprpyrKDILAYLNgevatsasidktapleiptqvkrvgteeletpakkprledsVHLQHVKQQLAARldapkeasvtldnikfgpgslteAMSVEKIAAIKAKRLAKKRTTIKrvatdtdgtdigdkdaekdNLKDMLAFDVDVTKNIISRERQWRTrtsifhtsgkiFSKNIFAILQSIKAreegrhrpapptplvpstpvnksvpqpivynrydqerFIKSreetegfkidtmgkgHMFVIStqsvstepqcpfrcicfrttVRCMFQhleyvprvsndttil

ntrlpsgapspshqkrisrtpiIIIPAANTSLITMFVTTEakraagskreneiliqrskgdgttvpyrVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAaasnipvvprpyRKDILAYLNGEVatsasidktapleiptqvkrvgteeletpakkprledsvHLQHVKQQLAARLDAPKEASVTldnikfgpgslteamSVEKIAAIKAkrlakkrttikrvatdtdgtdigdkdaekdnlkdmlafdvdvtkniisrerqwrtrtsifhtsgkifskNIFAILQSIKAREEgrhrpapptplvpstpvnksvpqpivynrydqerfiksreetegfkidtmgtyHGMTLKSVTEGNTPRKPALTPSTPAHQTPsatpnanaaaspaPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAaasnipvvprpyRKDILAYLNGEVatsasidktapleiptqvkrvgteeletpakkprledsvHLQHVKQQLAARLDAPKEASVTldnikfgpgslteamSVEKIAAIKAkrlakkrttikrvatdtdgtdigdkdaekdnlkdmlafdvdvtkniisrerqwrtrtsifhtsgkifskNIFAILQSIKAREEgrhrpapptplvpstpvnksvpqpIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTqsvstepqcPFRCICFRTTVRCMFQhleyvprvsndttil

NTRLPSGAPSPSHQKRISRTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEkiaaikakrlakkrttikrVAtdtdgtdigdkdAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRpapptplvpstpvNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQtpsatpnanaaaspapYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEkiaaikakrlakkrttikrVAtdtdgtdigdkdAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRpapptplvpstpvNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL

*******************TPIIIIPAANTSLITMFVTTEA***********ILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASI*******************************************************LDNIKFG******AMSVEKIAAIKAKRL****************************LKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSI*****************************IVYNRYDQERFI*******GFKIDTMGTYHG*******************************************INKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASI*******************************************************LDNIKFG******AMSVEKIAAIKAKRL****************************LKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSI*****************************IVYNRYDQERFIK****TEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRV*******

**********************IIIPAANTSLITM*************************DGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV**************************************************************************************************************************AFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAIL******************************************************IDTM******************************************************IERENQIIFGEFSWPKDVNTNYLHY*******VKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV**************************************************************************************************************************AFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAI*******************************************************IDTMGKG************************TTVRCMFQHLEYVPRVS******

***************RISRTPIIIIPAANTSLITMFVTTEA********ENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPA********************ASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL

******************RTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV******************************************H*K*QL*ARLD****A*V******F*PGSLTEAMSVEKIAAIKAKRLAKKRT********************KDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREE*********************P*PIVYNRYDQERFIKSREETEGFKIDTMGTYHGMT*********************************AASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEV***********************************************L**RLD**KEASV*LDN*K**PGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVAT**************DNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREE**************************YN*YDQERFIKSREETEGFKIDTMGKGHMFVIST***STEPQCPFRCICFRTTVRCMFQHLEYVPRVSN*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		831	2.2.26 [Sep-21-2011]
Q5ZLM0		531	Parafibromin OS=Gallus ga	yes	N/A	0.373	0.583	0.564	8e-93
Q8JZM7		531	Parafibromin OS=Mus muscu	yes	N/A	0.373	0.583	0.567	2e-92
Q6P1J9		531	Parafibromin OS=Homo sapi	yes	N/A	0.373	0.583	0.567	2e-92
Q4V8C8		531	Parafibromin OS=Rattus no	yes	N/A	0.373	0.583	0.564	1e-91
A1KZ92		1463	Peroxidasin-like protein	no	N/A	0.054	0.030	0.413	0.0001
A4IGL7		1457	Peroxidasin OS=Xenopus tr	no	N/A	0.038	0.021	0.687	0.0001
Q3UQ28		1475	Peroxidasin homolog OS=Mu	no	N/A	0.038	0.021	0.656	0.0002
Q92626		1479	Peroxidasin homolog OS=Ho	no	N/A	0.038	0.021	0.656	0.0002

>sp\|Q5ZLM0\|CDC73_CHICK Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1	Back alignment and function desciption

 Score =  342 bits (877), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 193/342 (56%), Positives = 241/342 (70%), Gaps = 32/342 (9%)

Query: 126 NQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASN 185
           +++IFGEFSWPK+V TNY+ + + +EG  ++YYTL+ +LF L N+ L+H  YVR+AA  N
Sbjct: 23  DEVIFGEFSWPKNVKTNYVIWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAATEN 82

Query: 186 IPVVPRPYRKDILAYLNGEVATSASIDKTAPLEI----PTQVKRVGTEELETPAKKPRLE 241
           IPVV RP RKD+LAYLNGE +TS+SID++APLEI     TQVKR   +E+   AKKPR+E
Sbjct: 83  IPVVRRPDRKDLLAYLNGETSTSSSIDRSAPLEIGLQRSTQVKR-AADEILAEAKKPRIE 141

Query: 242 DSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTI 301
           D   ++  K++LAARL+  KE  V  + I+    SL+EAMSVEKIAAIKAK +AKKR+TI
Sbjct: 142 DEECVRLDKERLAARLEGHKEGIVQTEQIR----SLSEAMSVEKIAAIKAKIMAKKRSTI 197

Query: 302 KRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKN 361
           K        TD+ D D      +  +  +VDVT++I+SRER WRTRT+I  ++GK F+KN
Sbjct: 198 K--------TDLDD-DITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQSTGKNFAKN 248

Query: 362 IFAILQSIKAREEGR---HRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREETEG 418
           IFAILQS+KAREEGR    RPAP T     T  NK  P P  YNRYDQERF K +EETEG
Sbjct: 249 IFAILQSVKAREEGRAPEQRPAPNTAPTDPTLRNKQ-PIPAAYNRYDQERF-KGKEETEG 306

Query: 419 FKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQTPSATP 460
           FKIDTMGTYHGMTLKSVTEG + RK          QTP+A P
Sbjct: 307 FKIDTMGTYHGMTLKSVTEGASARK---------TQTPAAQP 339

Tumor suppressor probably involved in transcriptional and post-transcriptional control pathways. May be involved in cell cycle progression through the regulation of cyclin D1/PRAD1 expression. Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3).
Gallus gallus (taxid: 9031)

>sp\|Q8JZM7\|CDC73_MOUSE Parafibromin OS=Mus musculus GN=Cdc73 PE=2 SV=1	Back alignment and function description

>sp\|Q6P1J9\|CDC73_HUMAN Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	Back alignment and function description

>sp\|Q4V8C8\|CDC73_RAT Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV=1	Back alignment and function description

>sp\|A1KZ92\|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3	Back alignment and function description

>sp\|A4IGL7\|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1	Back alignment and function description

>sp\|Q3UQ28\|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2	Back alignment and function description

>sp\|Q92626\|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		831
242014565		505	parafibromin, putative [Pediculus humanu	0.393	0.647	0.662	1e-120
350411288		525	PREDICTED: parafibromin-like [Bombus imp	0.397	0.628	0.665	1e-118
322796360		525	hypothetical protein SINV_03909 [Solenop	0.398	0.630	0.662	1e-118
307196389		526	Parafibromin [Harpegnathos saltator]	0.400	0.633	0.658	1e-117
307171070		526	Parafibromin [Camponotus floridanus]	0.399	0.631	0.662	1e-117
328709727		522	PREDICTED: parafibromin-like [Acyrthosip	0.393	0.626	0.642	1e-117
332028937		526	Parafibromin [Acromyrmex echinatior]	0.400	0.633	0.658	1e-117
340729619		525	PREDICTED: parafibromin-like [Bombus ter	0.375	0.594	0.687	1e-117
380020635		525	PREDICTED: LOW QUALITY PROTEIN: parafibr	0.375	0.594	0.685	1e-117
66514122		525	PREDICTED: parafibromin [Apis mellifera]	0.375	0.594	0.685	1e-117

>gi\|242014565\|ref\|XP_002427957.1\| parafibromin, putative [Pediculus humanus corporis] gi\|212512456\|gb\|EEB15219.1\| parafibromin, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/350 (66%), Positives = 267/350 (76%), Gaps = 23/350 (6%)

Query: 126 NQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASN 185
            QIIFGEFSWPK+V TNYL + S ++GA K+YYTLECLLF LKN+ L H  YVR+AAA  
Sbjct: 23  GQIIFGEFSWPKNVKTNYLIWGSGKDGAPKEYYTLECLLFILKNVQLTHAVYVRQAAAEL 82

Query: 186 IPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPRLEDSVH 245
           IP V RP RKD+L YLNGE +TSASIDK+APLEIPTQVKR   E LE+ +KKPR E++  
Sbjct: 83  IPAVRRPDRKDLLTYLNGETSTSASIDKSAPLEIPTQVKRTADESLESVSKKPRFEET-Q 141

Query: 246 LQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVA 305
           +Q VK+QLAARLDAPKEASVT+DNIK    SL+EAMSVEKIAAIKAKRLAKKRTTIK   
Sbjct: 142 VQKVKEQLAARLDAPKEASVTVDNIK----SLSEAMSVEKIAAIKAKRLAKKRTTIK--- 194

Query: 306 TDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAI 365
              D   +G       +LK ML FDVDVTK+I+SRERQWRTRT+I  ++GK+F+KNIFAI
Sbjct: 195 -GNDDIGLG------SDLKVMLDFDVDVTKDIVSRERQWRTRTTILQSAGKVFAKNIFAI 247

Query: 366 LQSIKAREEGRHRPAPPTPLV-PSTPVNKSVPQPIVYNRYDQERFIKSREETEGFKIDTM 424
           LQSIKAREEGRHRP  P P+V P     +  PQP VYNRYDQERFI+ +EETEGF+IDTM
Sbjct: 248 LQSIKAREEGRHRPPVPAPMVTPRATPARPAPQPAVYNRYDQERFIRQKEETEGFQIDTM 307

Query: 425 GTYHGMTLKSVTEGNTPRKPALTPSTPAHQT------PSATPNANAAASP 468
           GTYHGMTLKSVTEG  P+K A TP  P  QT      PS TPN   + +P
Sbjct: 308 GTYHGMTLKSVTEGTQPKK-APTPMPPVVQTPSPSLRPSTTPNKKVSRTP 356

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|350411288\|ref\|XP_003489299.1\| PREDICTED: parafibromin-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|322796360\|gb\|EFZ18901.1\| hypothetical protein SINV_03909 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|307196389\|gb\|EFN77978.1\| Parafibromin [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307171070\|gb\|EFN63113.1\| Parafibromin [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|328709727\|ref\|XP_001951247.2\| PREDICTED: parafibromin-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|332028937\|gb\|EGI68955.1\| Parafibromin [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|340729619\|ref\|XP_003403095.1\| PREDICTED: parafibromin-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|380020635\|ref\|XP_003694187.1\| PREDICTED: LOW QUALITY PROTEIN: parafibromin-like [Apis florea]	Back alignment and taxonomy information

>gi\|66514122\|ref\|XP_395835.2\| PREDICTED: parafibromin [Apis mellifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		831
FB\|FBgn0037657		538	hyx "hyrax" [Drosophila melano	0.400	0.618	0.507	4.5e-82
ZFIN\|ZDB-GENE-040426-1309		521	cdc73 "cell division cycle 73,	0.368	0.587	0.510	3.5e-75
UNIPROTKB\|Q5ZLM0		531	CDC73 "Parafibromin" [Gallus g	0.369	0.578	0.507	2.2e-73
UNIPROTKB\|E1BPQ8		531	CDC73 "Uncharacterized protein	0.369	0.578	0.510	7.5e-73
UNIPROTKB\|A2SXS7		531	HRPT2 "Uncharacterized protein	0.369	0.578	0.510	7.5e-73
UNIPROTKB\|Q6P1J9		531	CDC73 "Parafibromin" [Homo sap	0.369	0.578	0.510	7.5e-73
MGI\|MGI:2384876		531	Cdc73 "cell division cycle 73,	0.369	0.578	0.510	7.5e-73
RGD\|1311766		531	Cdc73 "cell division cycle 73"	0.369	0.578	0.507	3.2e-72
WB\|WBGene00018064		517	F35F11.1 [Caenorhabditis elega	0.131	0.210	0.442	3.8e-18
TAIR\|locus:2077076		415	PHP "PLANT HOMOLOGOUS TO PARAF	0.107	0.214	0.401	2.4e-07

FB\|FBgn0037657 hyx "hyrax" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 805 (288.4 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 180/355 (50%), Positives = 228/355 (64%)

Query:   103 ANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLEC 162
             A+P+ +  +     +  ++  S  QIIFGEFSWPK V TNYL Y S ++GA ++YYTLEC
Sbjct:     2 ADPLSLLRQYNINKKEIVERDS--QIIFGEFSWPKSVKTNYLKYGSGKKGAPREYYTLEC 59

Query:   163 LLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQ 222
             LL+ LKN+ L H+ YVR+ AA +IP V RP RK++LAYLNGE  T ASIDK+APLEIPTQ
Sbjct:    60 LLYLLKNVMLQHSVYVRQCAAEDIPAVNRPDRKELLAYLNGETPTCASIDKSAPLEIPTQ 119

Query:   223 VKRVGTEE---LETPAKKPRLEDSVHLQHVKQQLAARLDA-PKEASVTLDNIKFGPGSLT 278
             VKR    E   +E  AKK R E++  +Q V++QLAAR D   KE +V +DNIK    SL+
Sbjct:   120 VKRAAEGEPSSVEVAAKKARFEET-QVQKVREQLAARWDVNQKETAVNMDNIK----SLS 174

Query:   279 EAMSVEXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXXAEKDNLKDMLAFDVDVTKNII 338
             E MSVE                                 A   +L+ +L +DVD TK+II
Sbjct:   175 ETMSVEKIAAIKAKRLANKRTTIKRT---------DNDEAMGTDLRAILDYDVDSTKDII 225

Query:   339 SRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRXXXXXXXXXXXXXNKSVPQP 398
             SRERQWRTRTSI  ++GKIF+KNIFA+LQ IKAREEGR+R               + PQP
Sbjct:   226 SRERQWRTRTSILQSTGKIFAKNIFAMLQGIKAREEGRNRPQVPNPIKMPEPARIAKPQP 285

Query:   399 IV--YNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTP 451
              +  YNRYDQERF + +EETEGFKIDT+GTYHGM+LKSVTEG+  ++ A   + P
Sbjct:   286 QLSQYNRYDQERFNRQKEETEGFKIDTLGTYHGMSLKSVTEGSLAQRKAQANNLP 340

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0016593 "Cdc73/Paf1 complex" evidence=IDA

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IGI;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

ZFIN\|ZDB-GENE-040426-1309 cdc73 "cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZLM0 CDC73 "Parafibromin" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BPQ8 CDC73 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A2SXS7 HRPT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6P1J9 CDC73 "Parafibromin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2384876 Cdc73 "cell division cycle 73, Paf1/RNA polymerase II complex component" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1311766 Cdc73 "cell division cycle 73" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

WB\|WBGene00018064 F35F11.1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

TAIR\|locus:2077076 PHP "PLANT HOMOLOGOUS TO PARAFIBROMIN" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8JZM7	CDC73_MOUSE	No assigned EC number	0.5672	0.3730	0.5838	yes	N/A
Q5ZLM0	CDC73_CHICK	No assigned EC number	0.5643	0.3730	0.5838	yes	N/A
Q4V8C8	CDC73_RAT	No assigned EC number	0.5643	0.3730	0.5838	yes	N/A
Q6P1J9	CDC73_HUMAN	No assigned EC number	0.5672	0.3730	0.5838	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		831
pfam05179		273	pfam05179, CDC73, RNA pol II accessory factor, Cdc	1e-36
pfam05179		273	pfam05179, CDC73, RNA pol II accessory factor, Cdc	1e-18
pfam05179		273	pfam05179, CDC73, RNA pol II accessory factor, Cdc	2e-11
COG5157		362	COG5157, CDC73, RNA polymerase II assessory factor	4e-08

>gnl\|CDD\|113931 pfam05179, CDC73, RNA pol II accessory factor, Cdc73 family	Back alignment and domain information

 Score =  139 bits (351), Expect = 1e-36
 Identities = 61/121 (50%), Positives = 73/121 (60%), Gaps = 18/121 (14%)

Query: 4   LPSGAPSPSHQKRISRTPIIIIPAANTSLITM-----------FVTTEAKRAAGSKRENE 52
                PS    K+ SR PII+IP+A +SLITM           +V  +AKR  G ++   
Sbjct: 105 DKQNGPS----KKGSRDPIILIPSAASSLITMYNIKDFLQEGKYVPVDAKRKQGCQKPEL 160

Query: 53  ILIQRSKG--DGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFS 110
           I IQR        TV YRV+DNP KL   DWDRVVAVFV GPAWQFKGWPW+ +PV+IF 
Sbjct: 161 IAIQRKFSRSKFVTVRYRVVDNPEKLKPDDWDRVVAVFVTGPAWQFKGWPWN-SPVDIFH 219

Query: 111 K 111
           K
Sbjct: 220 K 220

Length = 273

>gnl\|CDD\|113931 pfam05179, CDC73, RNA pol II accessory factor, Cdc73 family	Back alignment and domain information

>gnl\|CDD\|113931 pfam05179, CDC73, RNA pol II accessory factor, Cdc73 family	Back alignment and domain information

>gnl\|CDD\|227486 COG5157, CDC73, RNA polymerase II assessory factor [Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		831
KOG3786\|consensus		395		100.0
PF05179		273	CDC73: RNA pol II accessory factor, Cdc73 family;	100.0
KOG3786\|consensus		395		100.0
COG5157		362	CDC73 RNA polymerase II assessory factor [Transcri	99.94
COG5157		362	CDC73 RNA polymerase II assessory factor [Transcri	99.63
PF05179		273	CDC73: RNA pol II accessory factor, Cdc73 family;	99.03
smart00013		33	LRRNT Leucine rich repeat N-terminal domain.	96.63
PF01462		28	LRRNT: Leucine rich repeat N-terminal domain; Inte	95.36
KOG4237\|consensus		498		86.58

>KOG3786\|consensus	Back alignment and domain information

Probab=100.00  E-value=5.8e-43  Score=374.28  Aligned_cols=219  Identities=52%  Similarity=0.732  Sum_probs=186.7

Q ss_pred             ehhhHHHHHhccCCchhHHHHHHHhcCCCcccCCchhhHHHHhcCCCCCCCccCcCCCCCcccccccccccccCCcCCCC
Q psy11137        159 TLECLLFFLKNIGLNHTAYVRKAAASNIPVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKP  238 (831)
Q Consensus       159 tLesllf~lkn~~l~H~~Yvr~A~a~~ip~V~rpDRkdllayL~Ge~~~~~~id~~aple~~~~~~r~~~~e~~~~~kk~  238 (831)
                      ||||||||+||++|+|++||+.+++++||+|+|||||+||.||||                             +.+|+|
T Consensus         1 tl~sll~l~kn~~~~h~v~l~~~~~~s~~~v~~~drk~lL~~~ng-----------------------------~~~~~~   51 (395)
T KOG3786|consen    1 TLDSLLLLLKNVALKHDVYLRASAEESIPVVTRPDRKELLFYLNG-----------------------------PIAKKP   51 (395)
T ss_pred             ChhHHHHHHHHHhhcCCeeeecccccCCCccccccHHHHHhhcCC-----------------------------hhhccC
Confidence            799999999999999999999999999999999999999999999                             136889


Q ss_pred             CcchhhhHHHHHHHHHhhhcCCCcccccccccccCCCCccccccHHHHHHHHHHHHhhhcccccccccCCCCCCCCCccc
Q psy11137        239 RLEDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDKDA  318 (831)
Q Consensus       239 r~e~~~~~~~~k~~l~~~l~~~~~~~v~~~~ir~~~~sLse~msvEkIAaiKaKrla~Kr~tIk~~d~~~~~~~~~~~~~  318 (831)
                      |.|+. +++.+              .|....|+    +|+++|++|+||+||||++++|+++|+..+-    ++    .+
T Consensus        52 ~~e~~-~~~~d--------------~~~~~~i~----~l~~amsd~~ia~ykak~~~~~~~~~k~~~~----~d----~i  104 (395)
T KOG3786|consen   52 RTEET-ELEND--------------SVFDLRIK----SLSEAMSDESIAEYKAKCLAKKRTNIKFLVR----TD----LI  104 (395)
T ss_pred             Cccce-eeeec--------------ccccHHHH----HHHHHhccHHHHHHhHHHHHhcccchhcccc----hH----HH
Confidence            99888 54422              25577888    9999999999999999999999999987652    11    12


Q ss_pred             ccccchhhhchhhhhhhhhHhhhccccccccccccCCcchhHhHHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCCCCC
Q psy11137        319 EKDNLKDMLAFDVDVTKNIISRERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPP---TPLVPSTPVNKSV  395 (831)
Q Consensus       319 ~~~~~r~~ld~d~d~tr~i~sRER~wRtR~svLqs~~k~F~~nil~iL~svk~ree~~~~~~~~---~~p~~~~~~~~~~  395 (831)
                      .  .+....++|++++++|++|||+||||+++||+.+++|+||++++|+.++.+++++.....+   -+|.++ .....+
T Consensus       105 ~--~~~g~~~~d~d~~~~i~k~Er~~rt~~~il~~~~~~~~k~~~s~l~~~~~~~e~~~~v~~~~~~~~~v~~-~~~~~~  181 (395)
T KOG3786|consen  105 V--WLKGNTESDVDLIRDILKRERPWRTRTTILQSTGREFVKNIFSKLQEVKAREEDRKTVEEHNPNFMPVDP-AIRIDG  181 (395)
T ss_pred             H--HhhCCccccHHHHhhhhccCCccchHHHHHhhcchhhhhhHHHHhhccceeeecCcccccccccccCCCH-HHhcCC
Confidence            2  2233679999999999999999999999999999999999999999999999999865432   345544 445677


Q ss_pred             CCCcccccchhhhhcccccccCCeeecccccccccccceecccCCCCCC
Q psy11137        396 PQPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKP  444 (831)
Q Consensus       396 ~~p~~YnRYdQERF~~k~eet~gF~Idt~Gt~hg~~lksv~~G~~~~~~  444 (831)
                      |.|+.||||+||||.       .|+||++|| |||+|+++++|+..+..
T Consensus       182 p~~~~y~ryi~~rf~-------~~~~~~~Gs-~g~~l~~~~e~~~~~~~  222 (395)
T KOG3786|consen  182 PKPIDYNRYIQERFL-------SFGIDTYGS-HGMKLKPVHEGARKRRK  222 (395)
T ss_pred             ccchhhhhhhhhhhh-------ccccccccc-ccccCCccchhhhhccc
Confidence            779999999999993       299999999 99999999999965544

>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme	Back alignment and domain information

>KOG3786\|consensus	Back alignment and domain information

>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]	Back alignment and domain information

>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]	Back alignment and domain information

>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme	Back alignment and domain information

>smart00013 LRRNT Leucine rich repeat N-terminal domain	Back alignment and domain information

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>KOG4237\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		831
4dm4_A		167	The Conserved Domain Of Yeast Cdc73 Length = 167		4e-04
3v46_A		170	Crystal Structure Of Yeast Cdc73 C-Terminal Domain		7e-04

>pdb|4DM4|A Chain A, The Conserved Domain Of Yeast Cdc73 Length = 167

Back alignment and structure

Iteration: 1

Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 13/104 (12%) Query: 19 RTPIIIIPAANTSLITMF----VTTEAK----RAAGSKRENEILIQRSKGDGTTVPYR-- 68 + PII+IP+A +S++T+ E+K R S + I+++ + + P R Sbjct: 2 KDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPSVPNGLVNIEKN-FERISRPIRFI 60 Query: 69 VIDNPLKLARTD-WDRVVAVFVMGPAWQFKGWPWDANPVEIFSK 111 ++DN + + WDRVVA+F G WQF + W++ P E+F + Sbjct: 61 IVDNTRMFTKPEYWDRVVAIFTTGHTWQFNNYQWNS-PQELFQR 103

PyMOL of 4dm4

>pdb|3V46|A Chain A, Crystal Structure Of Yeast Cdc73 C-Terminal Domain Length = 170

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		831
3v46_A		170	Cell division control protein 73; RAS-like fold, n	1e-31
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04

>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} Length = 170	Back alignment and structure

 Score =  120 bits (302), Expect = 1e-31
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%)

Query: 7   GAPSPSHQKRISRTPIIIIPAANTSLITM-----------FVTTEAKRAAGSKRENEILI 55
           G    +      + PII+IP+A +S++T+           +V         S     + I
Sbjct: 1   GIDPFTSSGGPRKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLP---SVPNGLVNI 57

Query: 56  QRS-KGDGTTVPYRVIDNPLKLARTD-WDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNL 113
           +++ +     + + ++DN     + + WDRVVA+F  G  WQF  + W+ +P E+F +  
Sbjct: 58  EKNFERISRPIRFIIVDNTRMFTKPEYWDRVVAIFTTGHTWQFNNYQWN-SPQELFQRCK 116

Query: 114 AVSRNFIQTTSCNQI 128
               +F   +    +
Sbjct: 117 GYYFHFAGDSVPQHV 131

PyMOL of 3v46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		831
3v46_A		170	Cell division control protein 73; RAS-like fold, n	100.0

>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A	Back alignment and structure

Probab=100.00  E-value=5e-36  Score=294.87  Aligned_cols=142  Identities=24%  Similarity=0.489  Sum_probs=117.6

Q ss_pred             CCCCCCCEEEecCCccceeecccchHHHHHc-------C-CCCCCeEEEEeecCC-CceeeEEEEeCCCCCC-CCCCCeE
Q psy11137         15 KRISRTPIIIIPAANTSLITMFVTTEAKRAA-------G-SKRENEILIQRSKGD-GTTVPYRVIDNPLKLA-RTDWDRV   84 (831)
Q Consensus        15 kr~~k~PIIIVPss~TSLITL~Ni~d~l~~~-------g-~~~~~~V~I~R~~~~-g~~v~yrVVDn~~~f~-pedWdRV   84 (831)
                      ....++||||||+|+||||||+|+++||+..       . ....++|+|+|+... +.+++|+||||+.+|+ ||||+||
T Consensus         9 ~~~~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~~~~~~v~I~r~~~~~~~~~~f~VVD~~~~~tkpe~W~RV   88 (170)
T 3v46_A            9 GGPRKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPSVPNGLVNIEKNFERISRPIRFIIVDNTRMFTKPEYWDRV   88 (170)
T ss_dssp             --CCSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCCCTTSEEEEEECCTTSSSCEEEEEESSSTTCCSGGGGGGE
T ss_pred             CCCCCCCEEEECCCccchhhHHHHHHHHhcCeecChhhcccCCCCeEEEEEecCCCCcceEEEEEEChHHcCCccCCceE
Confidence            3456899999999999999999999999753       1 123467889888653 6899999999999995 8999999


Q ss_pred             EEEEeeCCcccccCCCCCCChHHHhhhcceeEEeeeccCCcceeEeccccccccccc-ceeEeeccCCCCccceeehhhH
Q psy11137         85 VAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNT-NYLHYQSSREGAVKKYYTLECL  163 (831)
Q Consensus        85 VAVFvtGq~WQFK~wpw~~dP~eLF~~V~Gfyv~f~~de~ds~VIFGd~a~pk~VkT-ny~~~~~~~~g~~~eyYtLesl  163 (831)
                      |||||+|++||||+|||+ +|++||+++||||++|+++.           .|.+|+. |..+....|.   +-+=.-+++
T Consensus        89 VAVFv~G~~WQFk~w~~~-~P~elF~~v~Gf~~~~~~~~-----------~p~~v~~WnV~~l~l~r~---kRh~D~~~~  153 (170)
T 3v46_A           89 VAIFTTGHTWQFNNYQWN-SPQELFQRCKGYYFHFAGDS-----------VPQHVQQWNVEKVELDKN---KRFKDVEVV  153 (170)
T ss_dssp             EEEECCSCGGGGTTSSSC-SHHHHHHHSEEEEEEETTSC-----------CCHHHHHSSEEEEEECSS---CCTTHHHHH
T ss_pred             EEEEeECchhhcCCCCCC-ChHHHhccceEEEEEecCCC-----------CChhHhhCCCEEEEeCcC---ccccHHHHH
Confidence            999999999999999999 99999999999999999888           5556665 6666666664   344567888


Q ss_pred             HHHHhccC
Q psy11137        164 LFFLKNIG  171 (831)
Q Consensus       164 lf~lkn~~  171 (831)
                      ..||+.++
T Consensus       154 ~~FW~~Le  161 (170)
T 3v46_A          154 RYFWHSLE  161 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764

PyMOL of 3v46

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		831
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1w8aa_		192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1ozna_		284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 798 PQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
           P CPFRC C    V+C    LE VP+ +  DT +L
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL 36

PyMOL of d1xkua_

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00