Psyllid ID: psy11195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVVKTW
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEEEEEEEEEEccccccEEEEEEEccccccccEEEEHHHHHHHHHHccHHEEEEcEEEEEEccccccccccEEEEEEccEEEcccccccEEEEEEEEEEEEEEEccccccccccccEEEEEEEEEEcccEEEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEEcEEEEEcccEEEEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEEEEEEEEEcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHccHHHHEEEcHHHEccccEEEccccEEEEEEccEEEccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEcccccEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHcccEEccccEEEccccEEEEcccccHHHHHHccccccccccccccccHHHEEEEEEcccccEHHHHHEEEEHHHccccccEEEEEEEEEEEEEEccccccEEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MWNSLSVLRINLSIGLACIQQVstkvtfspmiyRTFEFIFtnlvpgntrhFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKelkmlprehiYSQYQGvwnlssdqgnlgvfMATNIRVVWYADMnesfnislpyIQIASIRLRESKFGLALVIESYEQsggyvlgfridpqetMQTVCKELQSYhrihtttpeygvdyVVSDVAilaeeapvvQEDIAeleeddnmldlsntltlysadhmgggtasanrklvfspelglcveqpkpgftmARLWEvipssdmnesfnislpYIQIASIRLRESKFGLALVIESYEQsggyvlgfridpqvrtkkincrgdvvvktw
Flexible Loop (DISEMBL)
MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYraynssklyrdlklrgAIVRrkelkmlprEHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGfridpqvrtkkincrgdvvvktw
Low Complexity Region (SEG)
MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVVKTW
Disordered region (IsUnstruct)
****LSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVV***
Disordered Region (DISOPRED)
MW*****LRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYV***********************DDNMLDLSNTLTLYSADHM***********VFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVVKTW
Disordered Region (DISEMBL)
MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVVKTW
Disordered Region (DISPRO)
MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVVKTW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRTFEFIFTNLVPGNTRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDxxxxxxxxxxxxxxxxxxxxxDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKINCRGDVVVKTW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q7ZWB7	342	Bardet-Biedl syndrome 5 p	yes	N/A	0.777	0.786	0.498	3e-79
Q4R649	341	Bardet-Biedl syndrome 5 p	N/A	N/A	0.777	0.788	0.491	3e-79
Q9CZQ9	341	Bardet-Biedl syndrome 5 p	yes	N/A	0.777	0.788	0.494	5e-79
Q8N3I7	341	Bardet-Biedl syndrome 5 p	yes	N/A	0.777	0.788	0.487	3e-78
Q66IS6	365	Bardet-Biedl syndrome 5 p	N/A	N/A	0.647	0.613	0.525	1e-70

>sp|Q7ZWB7|BBS5_DANRE Bardet-Biedl syndrome 5 protein homolog OS=Danio rerio GN=bbs5 PE=2 SV=1

 Score =  295 bits (756), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 205/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLS+G  CI  ++T+   S +  +T             FEFIFTN+VPG+
Sbjct: 59  IWHSLALPRVNLSVGYNCIINITTRTANSKLRGQTEALYILTKSNNTRFEFIFTNVVPGS 118

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRDLKLRGA+++ K+L++LP+E +Y +  GVWNLSSDQGNL
Sbjct: 119 PRLFTSVIAVHRAYETSKMYRDLKLRGALIQNKQLRLLPQEQVYDKINGVWNLSSDQGNL 178

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MNESFN+S+PY+QI SIR+R+SKFGLALVIES +Q+GGYVLGF+I
Sbjct: 179 GTFFITNVRIVWHANMNESFNVSIPYLQIRSIRIRDSKFGLALVIESSQQTGGYVLGFKI 238

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP + +Q   KE+ S H++++  P +GV+Y + +     EE  V Q  D  E+E D++  
Sbjct: 239 DPMDKLQDAVKEINSLHKVYSANPIFGVEYEMEEKPQPLEELTVEQPPDDVEIEPDEH-- 296

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++  T Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 297 --TDAFTAYFAD----GNKQHDREPVFSEELGLAIEKLKDGFTLQGLWEVM 341

Required for ciliogenesis.
Danio rerio (taxid: 7955)

>sp|Q4R649|BBS5_MACFA Bardet-Biedl syndrome 5 protein homolog OS=Macaca fascicularis GN=BBS5 PE=2 SV=2

 Score =  295 bits (755), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 143/291 (49%), Positives = 204/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+N+S+G  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  LWHSLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct: 238 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Macaca fascicularis (taxid: 9541)

>sp|Q9CZQ9|BBS5_MOUSE Bardet-Biedl syndrome 5 protein homolog OS=Mus musculus GN=Bbs5 PE=2 SV=1

 Score =  295 bits (754), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 204/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  IWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYILTKCNTTRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVIAVHRAYETSKMYRDFKLRSAVIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GV+Y + +     E   V Q +D  E++ DD+  
Sbjct: 238 DPVEKLQESVKEINSLHKVYSASPIFGVNYEMEEKPQPLEALTVEQIQDDVEIDSDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Mus musculus (taxid: 10090)

>sp|Q8N3I7|BBS5_HUMAN Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=1 SV=1

 Score =  292 bits (747), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/291 (48%), Positives = 203/291 (69%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+N+S+G  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  LWHSLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ D +  
Sbjct: 238 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane.

Homo sapiens (taxid: 9606)

>sp|Q66IS6|BBS5_XENLA Bardet-Biedl syndrome 5 protein homolog OS=Xenopus laevis GN=bbs5 PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 177/238 (74%), Gaps = 14/238 (5%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NL++G  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 59  IWHSLALPRVNLAVGYNCIINITTRTANSKLRGQTEALYILTKCNNTRFEFIFTNLVPGS 118

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRDLKLRGA+++ K+LK+LPRE +Y +  GVWNLSSDQGNL
Sbjct: 119 PRLFTSVIAVHRAYETSKMYRDLKLRGALIQNKQLKLLPREQVYDKINGVWNLSSDQGNL 178

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 179 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 238

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDN 224
           DP E +Q   KE+ S HR+++ +P +GV+Y + +     EE  + Q +D  E+E D++
Sbjct: 239 DPVEKLQDSVKEINSLHRVYSASPIFGVEYEMEEKPQALEELTIEQVQDDVEIEADEH 296

Required for ciliogenesis.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
91076058	338	PREDICTED: similar to Bardet-Biedl syndr	0.783	0.801	0.517	6e-79
242024669	378	conserved hypothetical protein [Pediculu	0.815	0.746	0.52	2e-78
348585675	341	PREDICTED: Bardet-Biedl syndrome 5 prote	0.774	0.785	0.506	2e-78
149730701	341	PREDICTED: Bardet-Biedl syndrome 5 prote	0.777	0.788	0.498	5e-78
432098391	341	Bardet-Biedl syndrome 5 protein like pro	0.777	0.788	0.498	6e-78
395519691	320	PREDICTED: Bardet-Biedl syndrome 5 prote	0.777	0.840	0.494	1e-77
335302951	341	PREDICTED: Bardet-Biedl syndrome 5 prote	0.777	0.788	0.498	1e-77
345797102	341	PREDICTED: Bardet-Biedl syndrome 5 prote	0.777	0.788	0.498	1e-77
281348190	327	hypothetical protein PANDA_004637 [Ailur	0.777	0.822	0.498	1e-77
41053537	342	Bardet-Biedl syndrome 5 protein homolog	0.777	0.786	0.498	2e-77

>gi|91076058|ref|XP_966616.1| PREDICTED: similar to Bardet-Biedl syndrome 5 [Tribolium castaneum] gi|270014685|gb|EFA11133.1| hypothetical protein TcasGA2_TC004734 [Tribolium castaneum]

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 151/292 (51%), Positives = 203/292 (69%), Gaps = 21/292 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+S++  R+NLSIG  C+  ++TKV  S +   T             FEFIFTNLVPG+
Sbjct: 55  LWHSVTSPRVNLSIGFNCVVTINTKVVNSKLRGTTQALHILTSSNGTRFEFIFTNLVPGS 114

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
           TRHFTSV+GV++AY SSKLYR+LKLRGA++  K+LK+LP E ++S   GVWNLSSDQG+L
Sbjct: 115 TRHFTSVMGVHKAYISSKLYRELKLRGAVIHNKQLKILPLEQVFSTLHGVWNLSSDQGSL 174

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F+ TN+R VW+ADMNE FNISLPY+QI+SI++R+SKFG ALV+ S E SG YVLGFR+
Sbjct: 175 GTFIVTNVRFVWFADMNEGFNISLPYLQISSIKIRDSKFGTALVVTSTEISGTYVLGFRV 234

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLD 227
           DP+E ++ + KEL S H ++ T+P +GV+Y        A     + ED+ E+EE     +
Sbjct: 235 DPEEKLRILYKELVSLHSVYKTSPIFGVEYKWCKGEEQANRK--LMEDVVEIEEPRG--E 290

Query: 228 LSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPS 279
           +SN L  Y AD         +R +V+SPELGL +E  K GFT+ +LWEV+PS
Sbjct: 291 MSNVLAAYLADE----GHEKDRPVVYSPELGLAIEGVKEGFTLQKLWEVLPS 338

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024669|ref|XP_002432749.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518234|gb|EEB20011.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/300 (52%), Positives = 205/300 (68%), Gaps = 18/300 (6%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPM------IY-------RTFEFIFTNLVPGN 47
           +W+SLS  R++LSIGL  I   +TK   S +      +Y         +EFIFTNL+PG 
Sbjct: 75  LWHSLSSPRVSLSIGLNTILNATTKNVISKLRGPVEALYLLTKTANNKYEFIFTNLMPGT 134

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
           TR FTSV+GV+RAY SSK+YR+LKLRGAI++ K+L++LP E I     GVWNLSSDQGNL
Sbjct: 135 TRLFTSVIGVHRAYLSSKMYRELKLRGAIIKHKQLQLLPLEQIVRTENGVWNLSSDQGNL 194

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F+ TNIR+VW+ADMNE FNISLPY+QIA +++RESKFG+ALVIES E SGGYV+GF+I
Sbjct: 195 GSFIITNIRIVWHADMNEHFNISLPYLQIALVKIRESKFGVALVIESVETSGGYVMGFKI 254

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNMLD 227
           DPQE ++ V KE+ S H +++  P  GV+Y +S+ AIL E+ P + E   EL+    +  
Sbjct: 255 DPQERLKMVYKEILSLHTVYSKCPILGVEYTLSNEAILPEDPPTLPEPEKELDLSSEI-- 312

Query: 228 LSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVIPSSDMNESFN 287
           +S  +  Y AD       S  R  V+ P+LGL VE+ K GFTM  LWEV+P S+  +  N
Sbjct: 313 ISRAINSYIADD---DPESMPRPPVYCPDLGLAVEELKEGFTMQDLWEVLPPSEFVQKQN 369

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348585675|ref|XP_003478596.1| PREDICTED: Bardet-Biedl syndrome 5 protein homolog [Cavia porcellus]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/290 (50%), Positives = 202/290 (69%), Gaps = 22/290 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  IWHSLALPRVNLSIGYNCILNITTRTANSKLQGQTEALYILTKSNSVRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A++R K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVIAVHRAYETSKMYRDFKLRSALIRNKQLRLLPQEHVYDKISGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++  P +GVDY + +     E   V Q +D  E+E DD+  
Sbjct: 238 DPVEKLQESVKEINSLHKVYSANPIFGVDYEMEEKPQPLEALTVEQIQDDVEIESDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEV 276
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEV 339

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149730701|ref|XP_001497772.1| PREDICTED: Bardet-Biedl syndrome 5 protein homolog [Equus caballus]

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 203/291 (69%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ RINLS+G  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  IWHSLAISRINLSVGYNCILNITTRTANSKLRGQTEALYILTKCNNTRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKISGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++  P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct: 238 DPLEKLQESVKEINSLHKVYSANPIFGVDYEMEEKPQSLEALTVEQIQDDVEIDSDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432098391|gb|ELK28191.1| Bardet-Biedl syndrome 5 protein like protein [Myotis davidii]

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 203/291 (69%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNL+PG+
Sbjct: 58  IWHSLALPRVNLSIGYNCILNITTRTAISKLRGQTEALYILTKCNSTRFEFIFTNLIPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ KEL++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVIAVHRAYETSKMYRDFKLRSALIQNKELRLLPQEHVYDKINGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct: 238 DPVEKLQASVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
              +    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --PDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395519691|ref|XP_003763976.1| PREDICTED: Bardet-Biedl syndrome 5 protein homolog [Sarcophilus harrisii]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 206/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ RINLS+G  C+  ++T+   S +  +T             FEFIFTN+VPGN
Sbjct: 37  IWHSLALSRINLSVGYNCVLSITTRTANSKLRGQTEALYILTKCNNTRFEFIFTNVVPGN 96

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YR+LKLR A+++ K+L++LP+E +Y +  GVWNLSSDQGNL
Sbjct: 97  PRLFTSVIAVHRAYETSKMYRELKLRSALIQNKQLRLLPQEQVYDKINGVWNLSSDQGNL 156

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES++QSGGYVLGF+I
Sbjct: 157 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKVRDSKFGLALVIESFQQSGGYVLGFKI 216

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S HR+++ +P +GVDY + +     E+  V Q +D  E+E D++  
Sbjct: 217 DPVEKLQESVKEINSLHRVYSASPVFGVDYEMEEKPQPLEDLTVEQIQDDVEIESDEH-- 274

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 275 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 319

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|335302951|ref|XP_001926383.3| PREDICTED: Bardet-Biedl syndrome 5 protein homolog [Sus scrofa]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 204/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  IWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct: 238 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQVQDDVEIDSDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345797102|ref|XP_535948.3| PREDICTED: Bardet-Biedl syndrome 5 protein homolog isoform 3 [Canis lupus familiaris]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 204/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 58  IWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 117

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 118 PRLFTSVIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct: 238 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDDH-- 295

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281348190|gb|EFB23774.1| hypothetical protein PANDA_004637 [Ailuropoda melanoleuca]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 204/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct: 44  IWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 103

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct: 104 PRLFTSVIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 163

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct: 164 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 223

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct: 224 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDDH-- 281

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 282 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 326

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41053537|ref|NP_956593.1| Bardet-Biedl syndrome 5 protein homolog [Danio rerio] gi|82209688|sp|Q7ZWB7.1|BBS5_DANRE RecName: Full=Bardet-Biedl syndrome 5 protein homolog gi|29436501|gb|AAH49492.1| Bardet-Biedl syndrome 5 [Danio rerio]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/291 (49%), Positives = 205/291 (70%), Gaps = 22/291 (7%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
           +W+SL++ R+NLS+G  CI  ++T+   S +  +T             FEFIFTN+VPG+
Sbjct: 59  IWHSLALPRVNLSVGYNCIINITTRTANSKLRGQTEALYILTKSNNTRFEFIFTNVVPGS 118

Query: 48  TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
            R FTSV+ V+RAY +SK+YRDLKLRGA+++ K+L++LP+E +Y +  GVWNLSSDQGNL
Sbjct: 119 PRLFTSVIAVHRAYETSKMYRDLKLRGALIQNKQLRLLPQEQVYDKINGVWNLSSDQGNL 178

Query: 108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
           G F  TN+R+VW+A+MNESFN+S+PY+QI SIR+R+SKFGLALVIES +Q+GGYVLGF+I
Sbjct: 179 GTFFITNVRIVWHANMNESFNVSIPYLQIRSIRIRDSKFGLALVIESSQQTGGYVLGFKI 238

Query: 168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
           DP + +Q   KE+ S H++++  P +GV+Y + +     EE  V Q  D  E+E D++  
Sbjct: 239 DPMDKLQDAVKEINSLHKVYSANPIFGVEYEMEEKPQPLEELTVEQPPDDVEIEPDEH-- 296

Query: 227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
             ++  T Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct: 297 --TDAFTAYFAD----GNKQHDREPVFSEELGLAIEKLKDGFTLQGLWEVM 341

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
ZFIN|ZDB-GENE-040426-1083	342	bbs5 "Bardet-Biedl syndrome 5"	0.777	0.786	0.498	3.2e-72
MGI|MGI:1919819	341	Bbs5 "Bardet-Biedl syndrome 5	0.777	0.788	0.494	1.1e-71
UNIPROTKB|Q8N3I7	341	BBS5 "Bardet-Biedl syndrome 5	0.777	0.788	0.487	3.7e-71
UNIPROTKB|A6QLF9	341	BBS5 "Uncharacterized protein"	0.777	0.788	0.484	1.3e-70
UNIPROTKB|E1C569	342	BBS5 "Uncharacterized protein"	0.774	0.783	0.5	2.1e-70
UNIPROTKB|F1S1V8	544	LOC100156983 "Uncharacterized	0.673	0.428	0.505	3.7e-64
FB|FBgn0037280	381	CG1126 [Drosophila melanogaste	0.702	0.637	0.470	8.8e-57
UNIPROTKB|A8HWI3	352	BBS5 "Bardet-biedl syndrome 5	0.777	0.764	0.435	8.6e-56
WB|WBGene00010974	361	bbs-5 [Caenorhabditis elegans	0.693	0.664	0.453	4.4e-52
UNIPROTKB|Q21626	361	bbs-5 "Protein BBS-5" [Caenorh	0.693	0.664	0.453	4.4e-52

ZFIN|ZDB-GENE-040426-1083 bbs5 "Bardet-Biedl syndrome 5" [Danio rerio (taxid:7955)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 145/291 (49%), Positives = 205/291 (70%)

Query:     1 MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
             +W+SL++ R+NLS+G  CI  ++T+   S +  +T             FEFIFTN+VPG+
Sbjct:    59 IWHSLALPRVNLSVGYNCIINITTRTANSKLRGQTEALYILTKSNNTRFEFIFTNVVPGS 118

Query:    48 TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
              R FTSV+ V+RAY +SK+YRDLKLRGA+++ K+L++LP+E +Y +  GVWNLSSDQGNL
Sbjct:   119 PRLFTSVIAVHRAYETSKMYRDLKLRGALIQNKQLRLLPQEQVYDKINGVWNLSSDQGNL 178

Query:   108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
             G F  TN+R+VW+A+MNESFN+S+PY+QI SIR+R+SKFGLALVIES +Q+GGYVLGF+I
Sbjct:   179 GTFFITNVRIVWHANMNESFNVSIPYLQIRSIRIRDSKFGLALVIESSQQTGGYVLGFKI 238

Query:   168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQE-DIAELEEDDNML 226
             DP + +Q   KE+ S H++++  P +GV+Y + +     EE  V Q  D  E+E D++  
Sbjct:   239 DPMDKLQDAVKEINSLHKVYSANPIFGVEYEMEEKPQPLEELTVEQPPDDVEIEPDEH-- 296

Query:   227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
               ++  T Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct:   297 --TDAFTAYFAD----GNKQHDREPVFSEELGLAIEKLKDGFTLQGLWEVM 341

GO:0001947 "heart looping" evidence=IMP

GO:0032402 "melanosome transport" evidence=IMP

GO:0046907 "intracellular transport" evidence=IMP

GO:0051877 "pigment granule aggregation in cell center" evidence=IMP

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060170 "cilium membrane" evidence=IEA

MGI|MGI:1919819 Bbs5 "Bardet-Biedl syndrome 5 (human)" [Mus musculus (taxid:10090)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 144/291 (49%), Positives = 204/291 (70%)

Query:     1 MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
             +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct:    58 IWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYILTKCNTTRFEFIFTNLVPGS 117

Query:    48 TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
              R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct:   118 PRLFTSVIAVHRAYETSKMYRDFKLRSAVIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query:   108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
             G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct:   178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query:   168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
             DP E +Q   KE+ S H++++ +P +GV+Y + +     E   V Q +D  E++ DD+  
Sbjct:   238 DPVEKLQESVKEINSLHKVYSASPIFGVNYEMEEKPQPLEALTVEQIQDDVEIDSDDH-- 295

Query:   227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
               ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct:   296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO

GO:0034464 "BBSome" evidence=ISO;IDA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q8N3I7 BBS5 "Bardet-Biedl syndrome 5 protein" [Homo sapiens (taxid:9606)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 142/291 (48%), Positives = 203/291 (69%)

Query:     1 MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
             +W+SL++ R+N+S+G  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct:    58 LWHSLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 117

Query:    48 TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
              R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct:   118 PRLFTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query:   108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
             G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct:   178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query:   168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
             DP E +Q   KE+ S H++++ +P +GVDY + +     E   V Q +D  E++ D +  
Sbjct:   238 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGH-- 295

Query:   227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
               ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct:   296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0060170 "cilium membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0034464 "BBSome" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0032402 "melanosome transport" evidence=ISS

GO:0001947 "heart looping" evidence=ISS

GO:0005932 "microtubule basal body" evidence=ISS

GO:0009296 "flagellum assembly" evidence=ISS

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

UNIPROTKB|A6QLF9 BBS5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 141/291 (48%), Positives = 204/291 (70%)

Query:     1 MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
             +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct:    58 VWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYVLTKCNSTRFEFIFTNLVPGS 117

Query:    48 TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
              R +TS++ V+RAY +SK+YRD KLR A+++ K+L++LP+E++Y++  GVWNLSSDQGNL
Sbjct:   118 PRLYTSLIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQENVYNKINGVWNLSSDQGNL 177

Query:   108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
             G F  TN+R+VW+A+MN+SFN+S+PY+QI S+++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct:   178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSVKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query:   168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ-EDIAELEEDDNML 226
             DP E +Q   KE+ S H++++  P +GVDY + +     E   V Q +D  E++ DD+  
Sbjct:   238 DPVEKLQESVKEINSLHKVYSANPIFGVDYEMEEKPQPLEALTVKQIQDDVEIDSDDH-- 295

Query:   227 DLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
               ++    Y AD    G    +R+ VFS ELGL +E+ K GFT+  LWEV+
Sbjct:   296 --TDAFVAYFAD----GNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVM 340

GO:0042384 "cilium assembly" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

UNIPROTKB|E1C569 BBS5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 146/292 (50%), Positives = 202/292 (69%)

Query:     1 MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
             +W SLS+ R+NLS+G  CI  ++T+   S +  +T             FEFIFTN+VPG+
Sbjct:    59 IWRSLSLPRVNLSVGYNCIINITTRTANSKLRGQTEALYILTKCNNTRFEFIFTNVVPGS 118

Query:    48 TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
              R FTSV+ V+RAY +SK+YRDLKLR A+++ K+L++LP+E IY +  GVWNLSSDQGNL
Sbjct:   119 PRLFTSVIAVHRAYETSKMYRDLKLRSALIQNKQLRLLPQEQIYDKINGVWNLSSDQGNL 178

Query:   108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
             G F  TN+RVVW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct:   179 GTFFITNVRVVWHANMNDSFNVSIPYLQIRSIKVRDSKFGLALVIESSQQSGGYVLGFKI 238

Query:   168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPV--VQEDIAELEEDDNM 225
             DP E +Q   KE+ S H++++  P +GVDY + +     E+  V  VQ+D+ E+E  +  
Sbjct:   239 DPVEKLQEAVKEINSLHKVYSANPIFGVDYEMEEKPQSLEDLTVEQVQDDV-EIEPGEQ- 296

Query:   226 LDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
                ++    Y AD         +R+ VFS ELGL VE+ K GFT+  LWEV+
Sbjct:   297 ---TDAFVAYFADE----NKQHDREPVFSEELGLAVEKLKDGFTLQGLWEVM 341

GO:0005932 "microtubule basal body" evidence=IEA

GO:0034464 "BBSome" evidence=IEA

UNIPROTKB|F1S1V8 LOC100156983 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 128/253 (50%), Positives = 182/253 (71%)

Query:     1 MWNSLSVLRINLSIGLACIQQVSTKVTFSPMIYRT-------------FEFIFTNLVPGN 47
             +W+SL++ R+NLSIG  CI  ++T+   S +  +T             FEFIFTNLVPG+
Sbjct:    58 IWHSLALPRVNLSIGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGS 117

Query:    48 TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNL 107
              R FTSV+ V+RAY +SK+YRD KLR A+++ K+L++LP+EH+Y +  GVWNLSSDQGNL
Sbjct:   118 PRLFTSVIAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNL 177

Query:   108 GVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRI 167
             G F  TN+R+VW+A+MN+SFN+S+PY+QI SI++R+SKFGLALVIES +QSGGYVLGF+I
Sbjct:   178 GTFFITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKI 237

Query:   168 DPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPV--VQEDIAELEEDDNM 225
             DP E +Q   KE+ S H++++ +P +GVDY + +     E   V  VQ+D+ E++ DD+ 
Sbjct:   238 DPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQVQDDV-EIDSDDH- 295

Query:   226 LDLSNTLTLYSAD 238
                ++    Y AD
Sbjct:   296 ---TDAFVAYFAD 305

GO:0034464 "BBSome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

FB|FBgn0037280 CG1126 [Drosophila melanogaster (taxid:7227)]

 Score = 547 (197.6 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 121/257 (47%), Positives = 158/257 (61%)

Query:    36 FEFIFTNLVPGNTRH-----FTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHI 90
             FEF+FT+ V G T       F SV  VY  Y  + LYRDLKLRGAIV+  +L +LP E +
Sbjct:   120 FEFLFTD-VSGETSRRDQPIFASVFDVYHLYQRTYLYRDLKLRGAIVQAGQLVILPDEEV 178

Query:    91 YSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLAL 150
             +S  QGVWNLSSDQGNLG F+ TNIR+VW+AD NE+FNISLPY+QI S+R+RESK+G AL
Sbjct:   179 FSHVQGVWNLSSDQGNLGSFVVTNIRLVWFADANETFNISLPYLQIESLRVRESKYGPAL 238

Query:   151 VIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDV-----AIL 205
             VI++ E  GGYVLGFR+DP E +  + KEL S H ++   P +G+ Y  +D      A  
Sbjct:   239 VIQTAETGGGYVLGFRVDPAERLNELFKELSSLHTVYGEHPNFGIQYNANDARRRLEAAS 298

Query:   206 AEEAPVVQEDIAELEEDDNMLDLS-NT-LTLYSADH-MGGGTASANRKLVFSPELGLCVE 262
              E A   Q  +   EE D   +   NT L  Y A+  +G   +   R  V+  ELG  +E
Sbjct:   299 EEAAQASQIKVDNFEELDERQEREINTKLNSYLAEGCLGKVPSQGERAPVYCKELGFAME 358

Query:   263 QPKPGFTMARLWEVIPS 279
                 G+ +  LW V+P+
Sbjct:   359 PIGDGYKLQDLWNVMPT 375

GO:0042384 "cilium assembly" evidence=ISM;IEP

UNIPROTKB|A8HWI3 BBS5 "Bardet-biedl syndrome 5 protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 128/294 (43%), Positives = 182/294 (61%)

Query:     2 WNSLSVLRINLSIGLACIQQVSTKVTFSPM------IY-------RTFEFIFTNLVPGNT 48
             W +    R N+ IG  CI  V+ +   S +      +Y       + FEFIFT     + 
Sbjct:    66 WVNKKNRRTNICIGHNCITTVNVRAATSRIKGSTQSLYVLTKYHNQRFEFIFTATASESA 125

Query:    49 RH--FTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGN 106
                 F S+ GV+RAY+SS+LYRDLKLRGA++  +EL++LP E  YS+  GVWNLS++QGN
Sbjct:   126 TDSLFASMQGVFRAYDSSRLYRDLKLRGALIMDRELRLLPLEQTYSRVNGVWNLSAEQGN 185

Query:   107 LGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFR 166
             LG F  +N+RVVWYA++ E+FN+S+PY+QI S+++RESKFG ALVIE+   SGGYVLGF+
Sbjct:   186 LGTFFISNVRVVWYANLAENFNVSIPYLQIRSVKVRESKFGQALVIETSPASGGYVLGFK 245

Query:   167 IDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVV---QEDIAELEEDD 223
             +DP+ET+  V KE+ S  +++   P +GV+Y   D + LA  A  +   ++D+  +E  D
Sbjct:   246 VDPKETLDYVFKEISSLWQVYAANPVFGVEYR-PDASGLAGAASGILPSEQDVEIVEPAD 304

Query:   224 NMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
                   + L  Y AD  G G   A+R   +  ELGL VE  K G T+ +LW V+
Sbjct:   305 R----GDALAQYYAD--GAGGKGADRDPTYCAELGLAVEGLKEGLTVEQLWSVL 352

GO:0009296 "flagellum assembly" evidence=IMP

WB|WBGene00010974 bbs-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 111/245 (45%), Positives = 161/245 (65%)

Query:    36 FEFIFTNLVPGN-TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRK-ELKMLPREHIYSQ 93
             FEFIFT   P + ++ F ++  + RAY ++K+YR+LK+RG  +R    LK+LP+E I  +
Sbjct:   114 FEFIFTTTNPASHSKLFNTISSISRAYETTKMYRELKMRGVFIREDGTLKILPQETIIEK 173

Query:    94 YQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIE 153
               GVWNLS++ G+LGVF+ TNIRVVWYA+MN  +N+S+PYI + S+R+RESKFG+ALV+E
Sbjct:   174 VNGVWNLSTETGSLGVFVITNIRVVWYAEMNIGYNVSVPYITLYSVRVRESKFGMALVLE 233

Query:   154 SYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ 213
             +   SG YVLGFR+DP E +Q + K +QS H+ H   P +GV YV  ++A   E      
Sbjct:   234 TTTSSGEYVLGFRVDPAERLQNLLKTVQSLHKAHLLKPIFGVSYV-KEIAEKVEPRKDDD 292

Query:   214 E-DIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKL-VFSPELGLCVEQPKPGFTMA 271
             E DI +  EDD  +D       +++   G  TA+  ++L V +PELGL +E  + GFT+ 
Sbjct:   293 EIDIIDNNEDDVEIDDKIRPDAFASYFDGEHTATDEKQLPVLNPELGLAIEPIRNGFTLH 352

Query:   272 RLWEV 276
              LW +
Sbjct:   353 DLWNI 357

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004427 "inorganic diphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006796 "phosphate-containing compound metabolic process" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0031513 "nonmotile primary cilium" evidence=IDA

UNIPROTKB|Q21626 bbs-5 "Protein BBS-5" [Caenorhabditis elegans (taxid:6239)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 111/245 (45%), Positives = 161/245 (65%)

Query:    36 FEFIFTNLVPGN-TRHFTSVLGVYRAYNSSKLYRDLKLRGAIVRRK-ELKMLPREHIYSQ 93
             FEFIFT   P + ++ F ++  + RAY ++K+YR+LK+RG  +R    LK+LP+E I  +
Sbjct:   114 FEFIFTTTNPASHSKLFNTISSISRAYETTKMYRELKMRGVFIREDGTLKILPQETIIEK 173

Query:    94 YQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIE 153
               GVWNLS++ G+LGVF+ TNIRVVWYA+MN  +N+S+PYI + S+R+RESKFG+ALV+E
Sbjct:   174 VNGVWNLSTETGSLGVFVITNIRVVWYAEMNIGYNVSVPYITLYSVRVRESKFGMALVLE 233

Query:   154 SYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ 213
             +   SG YVLGFR+DP E +Q + K +QS H+ H   P +GV YV  ++A   E      
Sbjct:   234 TTTSSGEYVLGFRVDPAERLQNLLKTVQSLHKAHLLKPIFGVSYV-KEIAEKVEPRKDDD 292

Query:   214 E-DIAELEEDDNMLDLSNTLTLYSADHMGGGTASANRKL-VFSPELGLCVEQPKPGFTMA 271
             E DI +  EDD  +D       +++   G  TA+  ++L V +PELGL +E  + GFT+ 
Sbjct:   293 EIDIIDNNEDDVEIDDKIRPDAFASYFDGEHTATDEKQLPVLNPELGLAIEPIRNGFTLH 352

Query:   272 RLWEV 276
              LW +
Sbjct:   353 DLWNI 357

GO:0005932 "microtubule basal body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N3I7	BBS5_HUMAN	No assigned EC number	0.4879	0.7774	0.7888	yes	N/A
Q9CZQ9	BBS5_MOUSE	No assigned EC number	0.4948	0.7774	0.7888	yes	N/A
Q7ZWB7	BBS5_DANRE	No assigned EC number	0.4982	0.7774	0.7865	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	346
pfam07289	339	pfam07289, DUF1448, Protein of unknown function (D	1e-112
pfam07289	339	pfam07289, DUF1448, Protein of unknown function (D	6e-24
smart00683	55	smart00683, DM16, Repeats in sea squirt COS41	2e-21
pfam07289	339	pfam07289, DUF1448, Protein of unknown function (D	9e-05
smart00683	55	smart00683, DM16, Repeats in sea squirt COS41	0.002

>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448)

 Score =  329 bits (846), Expect = e-112
 Identities = 131/295 (44%), Positives = 189/295 (64%), Gaps = 26/295 (8%)

Query: 1   MWNSLSVLRINLSIGLACIQQVSTKVTFS------PMIYRT-------FEFIFTNLVPGN 47
           +W+S    R+NLSIG   I  ++T+   S        +Y         FEFIFTN+   +
Sbjct: 53  IWHSKVNPRVNLSIGYNTITNINTRTVNSRLRGSTEALYILAKAGSTRFEFIFTNVSRES 112

Query: 48  TRH--FTSVLGVYRAYNSSKLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQG 105
           +    F SV  V+RAY +++LYR+LKLRGAI++  +L +LP E + S+  GVWNLSSDQG
Sbjct: 113 SSQSLFASVFDVWRAYQTTRLYRELKLRGAIIQDGQLNLLPDEQVISRVNGVWNLSSDQG 172

Query: 106 NLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGF 165
           NLG F  TNIR+VW+A+MNESFNIS+PY+QI+S+R+RESKFG ALVIE+    GGYVLGF
Sbjct: 173 NLGTFFVTNIRLVWFAEMNESFNISIPYLQISSLRVRESKFGPALVIETSSTGGGYVLGF 232

Query: 166 RIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQ---EDIAELEED 222
           R+DP E +  + KE  S H+++T  P +G++Y + + A    E   VQ   +D+ E++ +
Sbjct: 233 RVDPAEKLDELFKECNSLHKVYTENPIFGIEYEL-EDADQRLEGKAVQRREDDVEEVDTE 291

Query: 223 DNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI 277
            N    ++    Y AD   GG+   +R+ V+ PELGL +E+ + G+T+  LW V+
Sbjct: 292 IN----TDAFAAYYAD---GGSGGEDREPVYCPELGLAIEKLRNGYTLQDLWNVV 339

This family consists of several eukaryotic proteins of around 375 residues in length. The function of this family is unknown. It appears that this family includes a divergent GRAM domain. Length = 339

>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448)

 Score =  100 bits (250), Expect = 6e-24
 Identities = 35/52 (67%), Positives = 45/52 (86%)

Query: 280 SDMNESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVR 331
           ++MNESFNIS+PY+QI+S+R+RESKFG ALVIE+    GGYVLGFR+DP  +
Sbjct: 188 AEMNESFNISIPYLQISSLRVRESKFGPALVIETSSTGGGYVLGFRVDPAEK 239

This family consists of several eukaryotic proteins of around 375 residues in length. The function of this family is unknown. It appears that this family includes a divergent GRAM domain. Length = 339

>gnl|CDD|128926 smart00683, DM16, Repeats in sea squirt COS41

 Score = 85.8 bits (213), Expect = 2e-21
 Identities = 24/55 (43%), Positives = 39/55 (70%)

Query: 88  EHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLR 142
           E + ++  GV +   + G+LGVF  TN+R+VW++D N  FNIS+ Y+QI ++R+R
Sbjct: 1   ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVRVR 55

4, worm R01H10.6, fly CG1126 etc. Length = 55

>gnl|CDD|219365 pfam07289, DUF1448, Protein of unknown function (DUF1448)

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 80  KELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASI 139
            +LK+ P E + +    V +   + G+ GV + TN+R++W++ +N   N+S+ Y  I +I
Sbjct: 15  SKLKLRPGEKLLALLSSVEDTKGNNGDRGVLLVTNLRLIWHSKVNPRVNLSIGYNTITNI 74

Query: 140 RLRE 143
             R 
Sbjct: 75  NTRT 78

This family consists of several eukaryotic proteins of around 375 residues in length. The function of this family is unknown. It appears that this family includes a divergent GRAM domain. Length = 339

>gnl|CDD|128926 smart00683, DM16, Repeats in sea squirt COS41

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 280 SDMNESFNISLPYIQIASIRLR 301
           SD N  FNIS+ Y+QI ++R+R
Sbjct: 34  SDTNPRFNISVGYLQITNVRVR 55

4, worm R01H10.6, fly CG1126 etc. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	100.0
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	100.0
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	99.94
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	98.94
PF14470	96	bPH_3: Bacterial PH domain	97.7
PF03517	135	Voldacs: Regulator of volume decrease after cellul	96.03
PF08000	124	bPH_1: Bacterial PH domain; InterPro: IPR012544 Th	95.83
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	95.04
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	95.04
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	94.63
KOG3294|consensus	261		85.52
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	82.63

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=100.00  E-value=1.1e-103  Score=764.46  Aligned_cols=269  Identities=55%  Similarity=0.954  Sum_probs=256.6

Q ss_pred             CcccccCCceeEEEeeeeEEeEEEEeeecc------cce-------eeEEEEEeecCCCCc--cchhhHHHHHHHhhhch
Q psy11195          1 MWNSLSVLRINLSIGLACIQQVSTKVTFSP------MIY-------RTFEFIFTNLVPGNT--RHFTSVLGVYRAYNSSK   65 (346)
Q Consensus         1 iW~s~~~~r~NlSIG~~~i~~i~~~~~~sk------aL~-------~rfEFiFt~~~~~~~--rlf~~v~~v~raY~ts~   65 (346)
                      ||||.++||+|||||||||++|++|+++||      |||       +|||||||+++++++  |||++|++|||||+|||
T Consensus        53 iW~s~~~~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ts~  132 (339)
T PF07289_consen   53 IWHSLKRPRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYETSR  132 (339)
T ss_pred             EEeccCCCceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecCCceEEEEeccCCCCCccchHHHHHHHHHHHHHHHh
Confidence            799999999999999999999999999998      899       999999999999999  89999999999999999


Q ss_pred             hhhhhhhccceeccCcccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeecc
Q psy11195         66 LYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESK  145 (346)
Q Consensus        66 lyRelklR~~~I~~~~L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~SK  145 (346)
                      ||||||||||||++|+|+|||+|+++++++||||+|+|||++|+|+|||+|+||||++|++|||||||+||.+|++|+||
T Consensus       133 lYRelklR~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne~fNVSiPylqi~~i~ir~SK  212 (339)
T PF07289_consen  133 LYRELKLRGAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNESFNVSIPYLQIKSIRIRDSK  212 (339)
T ss_pred             HhhhhhhheeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCccccccchHhhheeeeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEEeccccEEEEEEeCCchhHHHHHHHHHHHHHHHhcCCCcceeeeeeehhhhcccCcccccccccccccccc
Q psy11195        146 FGLALVIESYEQSGGYVLGFRIDPQETMQTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAELEEDDNM  225 (346)
Q Consensus       146 fG~ALvI~T~~~sg~y~fgFridp~ekl~~lfkei~sLhraY~~spiygve~~~e~~~~~~~~~~~~q~~i~~~~~d~e~  225 (346)
                      ||+||||+|++++|+|+||||+||+|||+++||||++||++|.++|+|||+|..|+++++.+.     ..+.+.+||+|+
T Consensus       213 fG~aLVieT~~~sGgYVLGFRvDP~ErL~~l~KEi~sLh~vy~~~PifGVe~~~E~~~~~~~~-----~~~~~~~ddvE~  287 (339)
T PF07289_consen  213 FGPALVIETSESSGGYVLGFRVDPEERLQELFKEIQSLHKVYSANPIFGVEYELEDAPQSLES-----PTVQRFEDDVEI  287 (339)
T ss_pred             cceEEEEEEeccCCcEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCCcCceeeeccccccccc-----cccCccccceee
Confidence            999999999999999999999999999999999999999999999999999999999887765     456667777774


Q ss_pred             ---cccccceeEeeeccCCCCcccCCCceeeecCcceeeecCCCCceEeeeeEEe
Q psy11195        226 ---LDLSNTLTLYSADHMGGGTASANRKLVFSPELGLCVEQPKPGFTMARLWEVI  277 (346)
Q Consensus       226 ---~~~~~~l~~y~a~~~~g~~~~~~re~Vys~eLGLaiE~l~~G~tl~~LW~vv  277 (346)
                         +...|++++|+++++++   ..+|+||||+|||||||++|+|+||++||+|+
T Consensus       288 i~~~~~~d~~aaY~a~~~~~---~~dr~Pvys~eLGLAIEkL~~G~TLqdLW~Vi  339 (339)
T PF07289_consen  288 IDEEIETDAFAAYYADGNSK---GEDREPVYSPELGLAIEKLPEGFTLQDLWEVI  339 (339)
T ss_pred             eccccccchhhheecccccc---CCCCCCccchhhCeeeecCCCCCcHHHhhcCC
Confidence               55567999999998765   68899999999999999999999999999885

It consists of eukaryotic proteins of around 375 residues in length.

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=100.00  E-value=1.3e-71  Score=540.40  Aligned_cols=235  Identities=33%  Similarity=0.484  Sum_probs=212.8

Q ss_pred             hhhhhhhhccceeccCcccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeec
Q psy11195         65 KLYRDLKLRGAIVRRKELKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRES  144 (346)
Q Consensus        65 ~lyRelklR~~~I~~~~L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~S  144 (346)
                      .+|+|-.+|++ ++.++|+|+|||.+++++++|||||||+|+.|+|.|||||++|||..+|++||||||+||.+|++|..
T Consensus         1 ~~WqDreirFD-~~~~~l~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~r~NlSIG~~~i~~i~~~~~   79 (339)
T PF07289_consen    1 TLWQDREIRFD-VSASQLKLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRPRINLSIGYNCITNISTKTV   79 (339)
T ss_pred             CCcccceEEec-CChhhcccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCCceeEEeeceeEEEEEEEEe
Confidence            37899999999 79999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             --cc-e--eEEEEEEEeccccEEEEEEeCCchhH-HHHHHHHHHHHHHHhcCCCcceeeeeeehhhhcccCccccccccc
Q psy11195        145 --KF-G--LALVIESYEQSGGYVLGFRIDPQETM-QTVCKELQSYHRIHTTTPEYGVDYVVSDVAILAEEAPVVQEDIAE  218 (346)
Q Consensus       145 --Kf-G--~ALvI~T~~~sg~y~fgFridp~ekl-~~lfkei~sLhraY~~spiygve~~~e~~~~~~~~~~~~q~~i~~  218 (346)
                        |. |  +||||+|++++.||||+||....+.. ++||++++++||||+++++|| |++++                  
T Consensus        80 ~sklrg~teaL~i~~k~~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ts~lYR-elklR------------------  140 (339)
T PF07289_consen   80 NSKLRGNTEALYILAKFNNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYETSRLYR-ELKLR------------------  140 (339)
T ss_pred             eccccCceeEEEEeeecCCceEEEEeccCCCCCccchHHHHHHHHHHHHHHHhHhh-hhhhh------------------
Confidence              43 5  89999999999999999995444433 379999999999999999998 33322                  


Q ss_pred             ccccccccccccceeEeeeccCCCCcccCCCceeeecCcc---eeeecCCCCceEeeeeEEeeccCCCcccccceeeEEE
Q psy11195        219 LEEDDNMLDLSNTLTLYSADHMGGGTASANRKLVFSPELG---LCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQI  295 (346)
Q Consensus       219 ~~~d~e~~~~~~~l~~y~a~~~~g~~~~~~re~Vys~eLG---LaiE~l~~G~tl~~LW~vv~~a~~~~~~nvsipy~q~  295 (346)
                                       ++....|++...|+|.||+..-|   |+.|+++.|+++.++-|+||||++||+||||||||||
T Consensus       141 -----------------~aii~~~~L~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne~fNVSiPylqi  203 (339)
T PF07289_consen  141 -----------------GAIIRDGQLKLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNESFNVSIPYLQI  203 (339)
T ss_pred             -----------------eeeeeCCeEeeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCccccccchHhhh
Confidence                             22233344557888999998888   9999999999999999999999999999999999999


Q ss_pred             eeeeeecccceeeEEEEEecccCcEEEEEeeChhhhhcccc
Q psy11195        296 ASIRLRESKFGLALVIESYEQSGGYVLGFRIDPQVRTKKIN  336 (346)
Q Consensus       296 ~~~~~r~skfg~alvi~t~~~~g~yvlgfr~dp~~~l~~~~  336 (346)
                      ++|++|+||||+||||||+++||||||||||||+|||++++
T Consensus       204 ~~i~ir~SKfG~aLVieT~~~sGgYVLGFRvDP~ErL~~l~  244 (339)
T PF07289_consen  204 KSIRIRDSKFGPALVIETSESSGGYVLGFRVDPEERLQELF  244 (339)
T ss_pred             eeeeeeccccceEEEEEEeccCCcEEEEEEcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999873

It consists of eukaryotic proteins of around 375 residues in length.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=99.94  E-value=1.2e-27  Score=178.97  Aligned_cols=55  Identities=44%  Similarity=0.857  Sum_probs=54.2

Q ss_pred             ceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEe
Q psy11195         88 EHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLR  142 (346)
Q Consensus        88 E~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR  142 (346)
                      |+++++++||||+|||||++|+|+|||||+||||+++++|||||||+||.++++|
T Consensus         1 E~v~~~~~~Ved~kgn~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i~~r   55 (55)
T smart00683        1 ERVLTRINGVEDTKGNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVRVR   55 (55)
T ss_pred             CEEEeeecCeEecCCCCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEEEeC
Confidence            8999999999999999999999999999999999999999999999999999987

4, worm R01H10.6, fly CG1126 etc.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=98.94  E-value=9.1e-10  Score=82.85  Aligned_cols=43  Identities=30%  Similarity=0.411  Sum_probs=35.9

Q ss_pred             eeeecCCCCceEeeeeEEeeccCCCcccccceeeEEEeeeeee
Q psy11195        259 LCVEQPKPGFTMARLWEVIPSSDMNESFNISLPYIQIASIRLR  301 (346)
Q Consensus       259 LaiE~l~~G~tl~~LW~vv~~a~~~~~~nvsipy~q~~~~~~r  301 (346)
                      +.-+++..|..+.++-|++|||++++.||+||||+||.++++|
T Consensus        13 ~kgn~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i~~r   55 (55)
T smart00683       13 TKGNNGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNVRVR   55 (55)
T ss_pred             cCCCCCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEEEeC
Confidence            3444555666667777999999999999999999999999987

4, worm R01H10.6, fly CG1126 etc.

>PF14470 bPH_3: Bacterial PH domain

Probab=97.70  E-value=0.00061  Score=53.95  Aligned_cols=92  Identities=20%  Similarity=0.251  Sum_probs=74.7

Q ss_pred             ccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccC--CceeeeecceeEEEEEEeeccceeEEEEEEEeccccE
Q psy11195         84 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMN--ESFNISLPYIQIASIRLRESKFGLALVIESYEQSGGY  161 (346)
Q Consensus        84 LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n--~~fNlSIpY~qI~sI~iR~SKfG~ALvI~T~~~sg~y  161 (346)
                      |.|||.|.....|..+.. .....|.+++||=||+-+....  .....+|||..|.++..+...++..+-|+|  ++..+
T Consensus         1 L~~~E~I~~~~~~~~~~~-~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~--~~~~~   77 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYF-FTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET--NGEKI   77 (96)
T ss_pred             CcCCCEEEEEEEEEEeec-ccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE--CCEEE
Confidence            679999999999997766 6778999999999999998863  356799999999999999888888888888  66777


Q ss_pred             EEEEEeCCchhHHHHHHHH
Q psy11195        162 VLGFRIDPQETMQTVCKEL  180 (346)
Q Consensus       162 ~fgFridp~ekl~~lfkei  180 (346)
                      .+..-  +.+..+++.+.|
T Consensus        78 ~i~~i--~k~~~~~~~~~i   94 (96)
T PF14470_consen   78 KIDNI--QKGDVKEFYEYI   94 (96)
T ss_pred             EEEEc--CHHHHHHHHHHH
Confidence            77642  445566555443

>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation

Probab=96.03  E-value=0.032  Score=48.54  Aligned_cols=48  Identities=25%  Similarity=0.425  Sum_probs=28.6

Q ss_pred             eeEEEEeeEEEEEeccCCceeeeecceeE--EEEEEee--ccceeEEEEEEE
Q psy11195        108 GVFMATNIRVVWYADMNESFNISLPYIQI--ASIRLRE--SKFGLALVIESY  155 (346)
Q Consensus       108 GtliVTNLRiVW~A~~n~~fNlSIpY~qI--~sI~iR~--SKfG~ALvI~T~  155 (346)
                      |+|+|||=||+|++......-++|||-.|  +.|+--.  +...++||++--
T Consensus         1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld   52 (135)
T PF03517_consen    1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLD   52 (135)
T ss_dssp             EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE
T ss_pred             CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEe
Confidence            89999999999999544677778888754  4544222  344589999973

Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.

>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins

Probab=95.83  E-value=0.12  Score=45.01  Aligned_cols=87  Identities=20%  Similarity=0.314  Sum_probs=55.7

Q ss_pred             ccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEe---ccCCceee-eecceeEEEEEEeeccce---eEEEEEEEe
Q psy11195         84 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYA---DMNESFNI-SLPYIQIASIRLRESKFG---LALVIESYE  156 (346)
Q Consensus        84 LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A---~~n~~fNl-SIpY~qI~sI~iR~SKfG---~ALvI~T~~  156 (346)
                      |+|||+|+..+..+         +..++.||-|+|=.-   .......+ ||||-.|....+..+-..   --|-|  .-
T Consensus        27 L~~gE~I~~ayk~i---------RD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki--~i   95 (124)
T PF08000_consen   27 LLDGEEIEAAYKLI---------RDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKI--WI   95 (124)
T ss_dssp             SSTT--EEEEEEES---------SEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEE--EE
T ss_pred             cCCCCeeeeeehhh---------ceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEE--EE
Confidence            67999999999988         457999999999876   34455666 999999999999987321   22333  22


Q ss_pred             ccccEEEEEEeCCchhHHHHHHHHH
Q psy11195        157 QSGGYVLGFRIDPQETMQTVCKELQ  181 (346)
Q Consensus       157 ~sg~y~fgFridp~ekl~~lfkei~  181 (346)
                      .++.+..-|.........++++.+.
T Consensus        96 ~~~~~~i~~~f~k~~di~~i~k~L~  120 (124)
T PF08000_consen   96 SGQGFPIEFEFKKKTDIYEIYKALA  120 (124)
T ss_dssp             TTESSEEEEEEGTTSHHHHHHHHHH
T ss_pred             CCCcEEEEEecCCCCCHHHHHHHHH
Confidence            3334433333333344555655443

; PDB: 3DCX_E 3HSA_C 3B77_D.

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=95.04  E-value=0.069  Score=40.46  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=39.4

Q ss_pred             ccccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCc--eeeeecceeEEEEEEe
Q psy11195         82 LKMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNES--FNISLPYIQIASIRLR  142 (346)
Q Consensus        82 L~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~--fNlSIpY~qI~sI~iR  142 (346)
                      -.|-++|.+++..+ .+-.++.....|+|+|||=|+.-+|.....  ..+.||+..|.+|+..
T Consensus         7 F~lp~~E~li~~~~-c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~   68 (69)
T PF02893_consen    7 FKLPEEERLIEEYS-CALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE   68 (69)
T ss_dssp             ----TT--EEEEEE-ETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred             ccCCCCCeEEEEEE-EEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence            34778899988876 222222677899999999999999954444  3799999999999753

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=95.04  E-value=0.072  Score=39.42  Aligned_cols=56  Identities=18%  Similarity=0.331  Sum_probs=45.5

Q ss_pred             ccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCc-e-eeeecceeEEEEEE
Q psy11195         84 MLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNES-F-NISLPYIQIASIRL  141 (346)
Q Consensus        84 LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~-f-NlSIpY~qI~sI~i  141 (346)
                      |.++|.+++...--..  ++.-.-|+++|||=|+.-+|..... . .+.||+-.|.+|+.
T Consensus         2 l~~~E~l~~~~~C~l~--~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k   59 (61)
T smart00568        2 LPEEEKLIADYSCYLS--RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK   59 (61)
T ss_pred             cCCCcEEEEEEEeEEC--CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence            6789999998775554  5567799999999999999965444 4 79999999998853

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=94.63  E-value=0.07  Score=43.81  Aligned_cols=68  Identities=25%  Similarity=0.310  Sum_probs=46.6

Q ss_pred             cCcccccCCceEeeeecCeee----ccCCCCceeeEEEEeeEEEEEeccCCc-eeeeecceeEEEEEEeeccc
Q psy11195         79 RKELKMLPREHIYSQYQGVWN----LSSDQGNLGVFMATNIRVVWYADMNES-FNISLPYIQIASIRLRESKF  146 (346)
Q Consensus        79 ~~~L~LlpgE~vid~l~gVen----tkgnqG~lGtliVTNLRiVW~A~~n~~-fNlSIpY~qI~sI~iR~SKf  146 (346)
                      .++-.|.|+|.++-.-+||-=    .|..+=.-|++++|+-||+|.-+..+. ..++||...|..+..-.+-|
T Consensus         5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~   77 (89)
T PF11605_consen    5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL   77 (89)
T ss_dssp             CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT
T ss_pred             ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc
Confidence            466679999999999999953    344445589999999999998776664 58999999999996554433

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>KOG3294|consensus

Probab=85.52  E-value=1.1  Score=43.29  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=60.9

Q ss_pred             cCc-ccccCCceEeeeecCeeecc---CC------CCceeeEEEEeeEEEEEeccC--CceeeeecceeEEEEEEeeccc
Q psy11195         79 RKE-LKMLPREHIYSQYQGVWNLS---SD------QGNLGVFMATNIRVVWYADMN--ESFNISLPYIQIASIRLRESKF  146 (346)
Q Consensus        79 ~~~-L~LlpgE~vid~l~gVentk---gn------qG~lGtliVTNLRiVW~A~~n--~~fNlSIpY~qI~sI~iR~SKf  146 (346)
                      +++ ..+..||.+++..|||+=+=   .+      --..|++++||.|||.-+...  .-..-=+|++-|+++++..--|
T Consensus        10 ~G~gvl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQPvF   89 (261)
T KOG3294|consen   10 NGRGVLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQPVF   89 (261)
T ss_pred             CCceeEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCccc
Confidence            444 67888999999999998321   11      124899999999999999872  2234558899999999888777


Q ss_pred             e---eEEEEEEEecc-----ccEEEEEE
Q psy11195        147 G---LALVIESYEQS-----GGYVLGFR  166 (346)
Q Consensus       147 G---~ALvI~T~~~s-----g~y~fgFr  166 (346)
                      |   .+=.|++-...     -.|-+-|+
T Consensus        90 ~aNyikGtV~pvpgGg~~g~as~Kl~F~  117 (261)
T KOG3294|consen   90 GANYIKGTVQPVPGGGWEGEASFKLTFN  117 (261)
T ss_pred             ccceeeeeEeecCCCCccceeEEEEEec
Confidence            5   22233443333     35777776

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=82.63  E-value=3.5  Score=33.05  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             eeEEEEeeE--EEEEeccCCcee-eeecceeEEEEEEeec-cceeEEEEEEEec
Q psy11195        108 GVFMATNIR--VVWYADMNESFN-ISLPYIQIASIRLRES-KFGLALVIESYEQ  157 (346)
Q Consensus       108 GtliVTNLR--iVW~A~~n~~fN-lSIpY~qI~sI~iR~S-KfG~ALvI~T~~~  157 (346)
                      |+|.+|+=|  +.|-........ +||+|..|.+.++-.. +-...|=|-.+..
T Consensus        14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~   67 (79)
T PF08567_consen   14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDD   67 (79)
T ss_dssp             EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTS
T ss_pred             cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecC
Confidence            999999999  999998888876 9999999999877643 2224555554444

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	97.35
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	97.23
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	96.99
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	96.66
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	95.4
3b77_A	193	Uncharacterized protein; pleckstrin-homology domai	93.04
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	91.05
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	90.69
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	89.18

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=97.35  E-value=0.0005  Score=72.33  Aligned_cols=119  Identities=18%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             chhhhhhh-hcccee--ccCcccccCCceEeeeecCeeeccCCC-CceeeEEEEeeEEEEEeccC-CceeeeecceeEEE
Q psy11195         64 SKLYRDLK-LRGAIV--RRKELKMLPREHIYSQYQGVWNLSSDQ-GNLGVFMATNIRVVWYADMN-ESFNISLPYIQIAS  138 (346)
Q Consensus        64 s~lyRelk-lR~~~I--~~~~L~LlpgE~vid~l~gVentkgnq-G~lGtliVTNLRiVW~A~~n-~~fNlSIpY~qI~s  138 (346)
                      +.+-+|++ ||.+..  ....+.|||||.++...++|--..... ...|+|++||-||++.+... +.+.+.||+.+|..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~  137 (657)
T 1lw3_A           58 DNFSPDLRVLRESNKLAEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINR  137 (657)
T ss_dssp             -------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEE
T ss_pred             cchhhhhhhhhcccccccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEE
Confidence            33445555 555432  235788999999999999997544333 36899999999999998643 46889999999999


Q ss_pred             EEEee--cccee-EEEEEEEecccc-EEEEEEeCCchhHHHHHHHHHHH
Q psy11195        139 IRLRE--SKFGL-ALVIESYEQSGG-YVLGFRIDPQETMQTVCKELQSY  183 (346)
Q Consensus       139 I~iR~--SKfG~-ALvI~T~~~sg~-y~fgFridp~ekl~~lfkei~sL  183 (346)
                      |....  +..|. .-.|+-.+..-+ +.|.|.-+. +...++|..+..+
T Consensus       138 Iekv~g~s~~g~~~~~l~I~CKDfR~~~f~f~~~~-~~~~~v~~~L~~~  185 (657)
T 1lw3_A          138 VEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEG-RTRRSIFENLMKY  185 (657)
T ss_dssp             EEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGG-CCHHHHHHHHHHH
T ss_pred             EEecCCCcccCCCCceEEEEecCCcEEEEEeCCcc-chHHHHHHHHHHH
Confidence            97653  12221 223444555555 667775221 2345688777654

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=97.23  E-value=0.00084  Score=69.04  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=71.7

Q ss_pred             ccCcccccCCceEeeeecCeeeccCC-CCceeeEEEEeeEEEEEeccC-CceeeeecceeEEEEEEeec--ccee-EEEE
Q psy11195         78 RRKELKMLPREHIYSQYQGVWNLSSD-QGNLGVFMATNIRVVWYADMN-ESFNISLPYIQIASIRLRES--KFGL-ALVI  152 (346)
Q Consensus        78 ~~~~L~LlpgE~vid~l~gVentkgn-qG~lGtliVTNLRiVW~A~~n-~~fNlSIpY~qI~sI~iR~S--KfG~-ALvI  152 (346)
                      +...+.|||||.++...++|.-.... .+..|+|.+||-|+++.+... +.+.++||+.+|..|.....  ..|. .-.|
T Consensus         3 ~~~~~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l   82 (528)
T 1zsq_A            3 SMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGL   82 (528)
T ss_dssp             -CCCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEE
T ss_pred             CCCCCccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceE
Confidence            45678899999999999999865432 356899999999999998643 36889999999999976531  2222 2234


Q ss_pred             EEEecccc-EEEEEEeCCc-hhHHHHHHHHHHH
Q psy11195        153 ESYEQSGG-YVLGFRIDPQ-ETMQTVCKELQSY  183 (346)
Q Consensus       153 ~T~~~sg~-y~fgFridp~-ekl~~lfkei~sL  183 (346)
                      +-.+..-+ +.|.|.  +. +..+++|..+..+
T Consensus        83 ~I~CKDfr~~~f~f~--~~~~~~~~v~~~L~~~  113 (528)
T 1zsq_A           83 ETVCKDIRNLRFAHK--PEGRTRRSIFENLMKY  113 (528)
T ss_dssp             EEEETTTEEEEEECC--GGGCCHHHHHHHHHHH
T ss_pred             EEEccCCeEEEEEec--CchHHHHHHHHHHHHH
Confidence            44454555 556664  33 2245688776654

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=96.99  E-value=0.0035  Score=54.28  Aligned_cols=95  Identities=15%  Similarity=0.082  Sum_probs=72.5

Q ss_pred             eccCcccccCCceEeeeecCeeeccC----CCCceeeEEEEeeEEEEEeccCCc-eeeeecceeEEEEEEeecccee---
Q psy11195         77 VRRKELKMLPREHIYSQYQGVWNLSS----DQGNLGVFMATNIRVVWYADMNES-FNISLPYIQIASIRLRESKFGL---  148 (346)
Q Consensus        77 I~~~~L~LlpgE~vid~l~gVentkg----nqG~lGtliVTNLRiVW~A~~n~~-fNlSIpY~qI~sI~iR~SKfG~---  148 (346)
                      ..+++-.|+|||.++-..++|.=--|    .+=+-|++++||=||||-....+. ..+|+|+..|.++.+...-||.   
T Consensus        18 t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~fg~s~K   97 (145)
T 2cay_A           18 TSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPR   97 (145)
T ss_dssp             CTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCE
T ss_pred             ccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCccccCce
Confidence            45678889999999999999863333    345689999999999999888777 8999999999999998766652   


Q ss_pred             -EEEEEE-EeccccEEEEEEeCCch
Q psy11195        149 -ALVIES-YEQSGGYVLGFRIDPQE  171 (346)
Q Consensus       149 -ALvI~T-~~~sg~y~fgFridp~e  171 (346)
                       .|.+.. .....-+-|-|+--.+.
T Consensus        98 i~l~~~p~~~~~~~~KLsFk~GGa~  122 (145)
T 2cay_A           98 LILFFKDPSSSTEFVQLSFRKSDGV  122 (145)
T ss_dssp             EEEEESSCSSTTCCEEEEESSSCCH
T ss_pred             EEEEecCCCCCceEEEEEEcCCCch
Confidence             333333 23444689999865543

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=96.66  E-value=0.011  Score=50.64  Aligned_cols=91  Identities=16%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             CcccccCCceEeeeecCeeeccCC---CCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeecccee----EEEE
Q psy11195         80 KELKMLPREHIYSQYQGVWNLSSD---QGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGL----ALVI  152 (346)
Q Consensus        80 ~~L~LlpgE~vid~l~gVentkgn---qG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~SKfG~----ALvI  152 (346)
                      ++-.|.|||.++-..++|.=--|+   +=..|++++|+-||+|.....+..-++||+..|.++.....-||.    .|.+
T Consensus         9 ~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l   88 (140)
T 2hth_B            9 TSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHL   88 (140)
T ss_dssp             CCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTTSSCCEEEEEE
T ss_pred             CCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeeccccccCceEEEEe
Confidence            445589999999999999633333   346899999999999998877789999999999999988765543    3555


Q ss_pred             EEEe-----------ccccEEEEEEeCCc
Q psy11195        153 ESYE-----------QSGGYVLGFRIDPQ  170 (346)
Q Consensus       153 ~T~~-----------~sg~y~fgFridp~  170 (346)
                      ....           .+.-+-|-|+.-.+
T Consensus        89 ~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~  117 (140)
T 2hth_B           89 HPAPPNKEPGPFQSSKNSYIKLSFKEHGQ  117 (140)
T ss_dssp             CCCCCCSSSCCCSTTSCCEEEEEETTSCH
T ss_pred             cCCCccCCCCCcccccCcEEEEEEcCCCC
Confidence            4422           23448999986544

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}

Probab=95.40  E-value=0.05  Score=48.48  Aligned_cols=69  Identities=16%  Similarity=0.236  Sum_probs=42.4

Q ss_pred             CC--ceEeeeecCeeeccCCC-CceeeEEEEeeEEEEEeccCCceeeeecceeE--EEEEEeeccc-eeEEEEEEEe
Q psy11195         86 PR--EHIYSQYQGVWNLSSDQ-GNLGVFMATNIRVVWYADMNESFNISLPYIQI--ASIRLRESKF-GLALVIESYE  156 (346)
Q Consensus        86 pg--E~vid~l~gVentkgnq-G~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI--~sI~iR~SKf-G~ALvI~T~~  156 (346)
                      |+  |.|.-+.++|.=.=+.. --.|+|+||+=||+|++.  ....+||||-+|  ..|.--.+.| .++||++-..
T Consensus        19 p~~~E~v~~~~~~v~~vl~~~~~g~GtLyVt~~~l~W~~~--~~~G~sI~YpsIsLHAIsrd~~~~p~~clY~Qld~   93 (171)
T 1zyi_A           19 PGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDG--SGLGFSLEYPTISLHAVSRDLNAYPREHLYVMVNA   93 (171)
T ss_dssp             --------CBCSSEEEEBTTBCCCEEEEEEETTEEEEEET--TTEEEEESSCCCSEEECCSSCSSCCSCCEEEEEEC
T ss_pred             CCCccceEEEcCCEEEEECCCccCceEEEEEcCEEEEEcC--CCcEEEeecCeEEEEEEecCCCCCCCceEEEEEec
Confidence            55  66655555554322221 126999999999999998  568888888764  4553333444 4899999764

>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13

Probab=93.04  E-value=0.77  Score=41.64  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             cccC--CceEeeeecCeeeccCCCCceeeEEEEeeEEEEEec----cCCceeeeecce--eEEEEEEeec-cceeEEEEE
Q psy11195         83 KMLP--REHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYAD----MNESFNISLPYI--QIASIRLRES-KFGLALVIE  153 (346)
Q Consensus        83 ~Llp--gE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~----~n~~fNlSIpY~--qI~sI~iR~S-KfG~ALvI~  153 (346)
                      -|+|  ||+|+..+..+-|         .++.||-|||=.-.    ....-=.||||.  .|..+.+..+ .|-.--=|.
T Consensus        21 ~Ll~EdgE~I~~ayk~irD---------~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaElk   91 (193)
T 3b77_A           21 YVLHEDGEKIYFLIKSKTD---------EYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVEIK   91 (193)
T ss_dssp             GSCGGGTCCEEEEEECSSE---------EEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEEEE
T ss_pred             hccCCCCCEEeeeeeecce---------EEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCccEE
Confidence            3789  9999999998876         79999999998872    223445699999  9999999976 332221222


Q ss_pred             EEeccccEEEEEEeCCchhHHHHHHHHHHHHHH
Q psy11195        154 SYEQSGGYVLGFRIDPQETMQTVCKELQSYHRI  186 (346)
Q Consensus       154 T~~~sg~y~fgFridp~ekl~~lfkei~sLhra  186 (346)
                      -.-.++.|.+=|.=...+..++++|.+..|-..
T Consensus        92 i~i~~~~~~Ief~K~~~~di~~lyk~L~~is~~  124 (193)
T 3b77_A           92 FEIGGKHYSIDVDKKQLEHVKDLYKALLAIAEK  124 (193)
T ss_dssp             EEETTEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCceEEEEeCCcchhhHHHHHHHHHHHHHH
Confidence            222344577766532245677888887777443

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=91.05  E-value=1.7  Score=36.83  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             cccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEecc----CCceeeeecceeEEEEEEeec-cce--eEEEEEEE
Q psy11195         83 KMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADM----NESFNISLPYIQIASIRLRES-KFG--LALVIESY  155 (346)
Q Consensus        83 ~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~----n~~fNlSIpY~qI~sI~iR~S-KfG--~ALvI~T~  155 (346)
                      -|.|||+++..+..+-         ..++.||-|+|=.-..    ...-=.||||-.|....+.++ .|-  --|-|-++
T Consensus        27 ~L~~gE~I~~ayk~iR---------D~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~is   97 (126)
T 3hsa_A           27 ILGDNEELQLAYXMVR---------DLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWIS   97 (126)
T ss_dssp             GSCTTCCEEEEEECSS---------EEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEET
T ss_pred             hcCCCCEEEEEehhcC---------ceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEc
Confidence            4899999999998875         5799999999987643    233456999999999999986 443  13444444


Q ss_pred             eccccEEEEEEeCCchhHHHHHHHH
Q psy11195        156 EQSGGYVLGFRIDPQETMQTVCKEL  180 (346)
Q Consensus       156 ~~sg~y~fgFridp~ekl~~lfkei  180 (346)
                      ...--+++-|+=+  ....++++.+
T Consensus        98 g~~~pi~~~f~k~--~di~~i~k~L  120 (126)
T 3hsa_A           98 GQHEPLVXELXRG--TDVVGIQXTI  120 (126)
T ss_dssp             TCSSCEEEEECTT--SCHHHHHHHH
T ss_pred             CCceEEEEeccCc--ccHHHHHHHH
Confidence            4433378888532  3455555543

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=90.69  E-value=0.9  Score=37.68  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             CCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEee-ccceeEEEEEEEeccccEEEE
Q psy11195         86 PREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRE-SKFGLALVIESYEQSGGYVLG  164 (346)
Q Consensus        86 pgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~-SKfG~ALvI~T~~~sg~y~fg  164 (346)
                      ..|+++=+++.|--=|.+    |+|.++.=||.|-.+..+.+-+|++|..|.+.++-. .|-.--|=|--+ +.+.|.|-
T Consensus         4 ~~~~~ll~v~~v~yKK~d----GtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~-~~~~~~F~   78 (108)
T 1pfj_A            4 SSEEVLLIVKKVRQKKQD----GALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLH-AGDTTNFH   78 (108)
T ss_dssp             SSCCEEEEESCCBCSSCB----CEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECS-SSCEEEEE
T ss_pred             cchheeEEehhheeecCC----ceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEe-CCCceEEE
Confidence            467888888888766666    999999999999999999999999999999987764 232233433333 25789999


Q ss_pred             EEeCC
Q psy11195        165 FRIDP  169 (346)
Q Consensus       165 Fridp  169 (346)
                      |+...
T Consensus        79 Ftn~~   83 (108)
T 1pfj_A           79 FSNES   83 (108)
T ss_dssp             CCCSS
T ss_pred             EcCcH
Confidence            98743

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=89.18  E-value=1.5  Score=44.93  Aligned_cols=86  Identities=15%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             eeecCeeecc----CCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeec-cceeEEEEEEEecccc-EEEEE
Q psy11195         92 SQYQGVWNLS----SDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRES-KFGLALVIESYEQSGG-YVLGF  165 (346)
Q Consensus        92 d~l~gVentk----gnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~S-KfG~ALvI~T~~~sg~-y~fgF  165 (346)
                      .++++|--+.    +..+..|+|.+||-|++..++...  -+.||+..|.+|..+.. .-|..|.|.+  ..-+ +.|.|
T Consensus         7 ~~v~~V~l~~~~~~~~~~~~GtL~lTn~~LiF~~~~~~--e~wi~~~~I~~VeK~~~~~~~~~l~I~C--KDfr~~~f~f   82 (512)
T 2yf0_A            7 TKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQK--ETWILHHHIASVEKLALTTSGCPLVIQC--KNFRTVHFIV   82 (512)
T ss_dssp             EEEEECCCC--------CCEEEEEECSSEEEEEESSSC--EEEEEGGGEEEEEECCCBTTBEEEEEEE--TTSCEEEEEE
T ss_pred             CccccEEEEeccCCCCCceeEEEEEECCEEEEeCCCCC--ceEecccceeEEEEecCCCCCceEEEEe--cCCcEEEEEe
Confidence            4566665432    356889999999999999996544  36789999999976542 3344555444  4444 56666


Q ss_pred             EeCCchhHHHHHHHHHHH
Q psy11195        166 RIDPQETMQTVCKELQSY  183 (346)
Q Consensus       166 ridp~ekl~~lfkei~sL  183 (346)
                      .  ..+...++|..+..+
T Consensus        83 ~--~~~~~~~v~~sL~~~   98 (512)
T 2yf0_A           83 P--RERDCHDIYNSLLQL   98 (512)
T ss_dssp             S--CHHHHHHHHHHHHHH
T ss_pred             C--ChHHHHHHHHHHHhh
Confidence            4  334455688777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	97.66
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	97.32
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	96.96
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	95.18
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	93.85

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00019  Score=58.47  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             cccccCCceEeeeecCeeeccCC-CCceeeEEEEeeEEEEEe-ccCCceeeeecceeEEEEEEeeccc-----eeEEEEE
Q psy11195         81 ELKMLPREHIYSQYQGVWNLSSD-QGNLGVFMATNIRVVWYA-DMNESFNISLPYIQIASIRLRESKF-----GLALVIE  153 (346)
Q Consensus        81 ~L~LlpgE~vid~l~gVentkgn-qG~lGtliVTNLRiVW~A-~~n~~fNlSIpY~qI~sI~iR~SKf-----G~ALvI~  153 (346)
                      +-.|+|||.++...++|-=...- ..-.|+|.+||-|++-.+ +..+.+.++||+.+|.++.......     ...|-|-
T Consensus         2 ~~~llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~   81 (125)
T d1zsqa1           2 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV   81 (125)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEE
T ss_pred             CCCcCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEE
Confidence            45799999999999998443322 245799999999999986 4566789999999999997654311     1345444


Q ss_pred             EEecccc-EEEEEEeCCchhHHHHHHHHHHH
Q psy11195        154 SYEQSGG-YVLGFRIDPQETMQTVCKELQSY  183 (346)
Q Consensus       154 T~~~sg~-y~fgFridp~ekl~~lfkei~sL  183 (346)
                        +...| +.|.|.-.+.+ -+++|+.++.+
T Consensus        82 --CKDfr~~~f~f~~e~~~-~~~v~~~L~~~  109 (125)
T d1zsqa1          82 --CKDIRNLRFAHKPEGRT-RRSIFENLMKY  109 (125)
T ss_dssp             --ETTTEEEEEECCGGGCC-HHHHHHHHHHH
T ss_pred             --eccCeEEEEEEcCCccH-HHHHHHHHHHh
Confidence              44444 55666322222 34588776655

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00064  Score=55.60  Aligned_cols=86  Identities=16%  Similarity=0.223  Sum_probs=65.9

Q ss_pred             cccCCceEeeeecCee----eccCCCCceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEeecccee----EEEEEE
Q psy11195         83 KMLPREHIYSQYQGVW----NLSSDQGNLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRESKFGL----ALVIES  154 (346)
Q Consensus        83 ~LlpgE~vid~l~gVe----ntkgnqG~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~SKfG~----ALvI~T  154 (346)
                      .|.|||.++-.-+||.    |-|. +=.-|++++||-||||.....+...+|||+..|.++.+...-||.    .+++..
T Consensus         8 ll~~~E~~l~~~~~V~lydG~~k~-~~~~G~l~LTthRli~~~~~~~~~s~~lpl~~i~~~e~~~~~fg~s~ki~l~l~~   86 (129)
T d2hthb1           8 LLEINETLVIQQRGVRIYDGEEKI-KFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHP   86 (129)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTCSS-CCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTTSSCCEEEEEECC
T ss_pred             CCCCCcEEEEEeCCEEeecCCCcc-cccceEEEEEeceEEEecCCCCceEEEEEhHHceeeeEEcccccCCceEEEEEcc
Confidence            3789999999999997    3333 225699999999999998888888899999999999998877763    455544


Q ss_pred             Eec-----------cccEEEEEEeCC
Q psy11195        155 YEQ-----------SGGYVLGFRIDP  169 (346)
Q Consensus       155 ~~~-----------sg~y~fgFridp  169 (346)
                      ...           ..-+-|.|+--.
T Consensus        87 ~~~~~~~gp~~~s~~~~~KLsFk~GG  112 (129)
T d2hthb1          87 APPNKEPGPFQSSKNSYIKLSFKEHG  112 (129)
T ss_dssp             CCCCSSSCCCSTTSCCEEEEEETTSC
T ss_pred             CCcCCcCCCcCcCCceEEEEEECCCC
Confidence            321           112669998644

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00041  Score=57.23  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             eeccCcccccCCceEeeeecCeeeccCCC----CceeeEEEEeeEEEEEeccCCce-eeeecceeEEEEEEeeccce---
Q psy11195         76 IVRRKELKMLPREHIYSQYQGVWNLSSDQ----GNLGVFMATNIRVVWYADMNESF-NISLPYIQIASIRLRESKFG---  147 (346)
Q Consensus        76 ~I~~~~L~LlpgE~vid~l~gVentkgnq----G~lGtliVTNLRiVW~A~~n~~f-NlSIpY~qI~sI~iR~SKfG---  147 (346)
                      +..+++-.|.+||.++-.-+||.=--|++    -..|++++||-||||....++.+ -+|||+..|.++.+...-||   
T Consensus         9 ~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~~~ss~   88 (130)
T d2caya1           9 TTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSP   88 (130)
T ss_dssp             BCTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSC
T ss_pred             cccCCCeEccCCeEEEEEeCCEEEEECCccCccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccccCCCC
Confidence            34678899999999999999996444433    34799999999999999888766 49999999999998775444   


Q ss_pred             -eEEEEEEEe-ccccEEEEEEeCC
Q psy11195        148 -LALVIESYE-QSGGYVLGFRIDP  169 (346)
Q Consensus       148 -~ALvI~T~~-~sg~y~fgFridp  169 (346)
                       -.|.+.... .+.-.-|-||---
T Consensus        89 KI~l~l~~~~~~~~~vklsFr~gg  112 (130)
T d2caya1          89 RLILFFKDPSSSTEFVQLSFRKSD  112 (130)
T ss_dssp             EEEEEESSCSSTTCCEEEEESSSC
T ss_pred             eEEEEeCCCCCCCCEEEEEEcCCC
Confidence             133332222 2233677887543

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=95.18  E-value=0.065  Score=43.06  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=57.4

Q ss_pred             cccCCceEeeeecCeeeccCCCCceeeEEEEeeEEEEEec---cCCceee-eecceeEEEEEEeec-cce--eEEEEEEE
Q psy11195         83 KMLPREHIYSQYQGVWNLSSDQGNLGVFMATNIRVVWYAD---MNESFNI-SLPYIQIASIRLRES-KFG--LALVIESY  155 (346)
Q Consensus        83 ~LlpgE~vid~l~gVentkgnqG~lGtliVTNLRiVW~A~---~n~~fNl-SIpY~qI~sI~iR~S-KfG--~ALvI~T~  155 (346)
                      -|.|||+++..+..+-         ..+++||.|+|=.-.   .-....+ ||||-.|....+.++ .|-  --|-|-++
T Consensus        18 lL~~gE~i~~~yk~~r---------D~~~FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~~siEtAGtfD~DsElki~~~   88 (116)
T d3dcxa1          18 IMGDNEQLALAYRVIR---------DMFVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTFDMDAELKLWIS   88 (116)
T ss_dssp             GSCTTCCEEEEEEETT---------EEEEEESSEEEEEEEESSSCCEEEEEEEEGGGEEEEEEECCSSTTSCEEEEEEET
T ss_pred             hcCCCCEEEEEEEeec---------ceEEEecceEEEEeccccccceEEEEEEehhHeEEEEEEeCccccCcccEEEEEe
Confidence            4899999999998774         467889999998872   3344554 999999999999976 331  35777777


Q ss_pred             eccccEEEEEE
Q psy11195        156 EQSGGYVLGFR  166 (346)
Q Consensus       156 ~~sg~y~fgFr  166 (346)
                      .....+++-|+
T Consensus        89 ~~~~~i~~ef~   99 (116)
T d3dcxa1          89 GQKDPLVKELK   99 (116)
T ss_dssp             TCSSCEEEEEC
T ss_pred             cCceEEEEEeC
Confidence            66667777776

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.18  Score=39.87  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             ceeeEEEEeeEEEEEeccCCceeeeecceeEEEEEEee-ccceeEEEEEEEeccccEEEEEEeCCc
Q psy11195        106 NLGVFMATNIRVVWYADMNESFNISLPYIQIASIRLRE-SKFGLALVIESYEQSGGYVLGFRIDPQ  170 (346)
Q Consensus       106 ~lGtliVTNLRiVW~A~~n~~fNlSIpY~qI~sI~iR~-SKfG~ALvI~T~~~sg~y~fgFridp~  170 (346)
                      .-|+|.+|.=||.|-.+......++++|..|.+.++-. ++-...|=|-.+ .+..|.|-|+..|.
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~-~~~s~~F~Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLH-AGDTTNFHFSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECCTTCSSEEEEEEET-TSCEEEEEECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCCCCcccceeEEEEe-CCCeEEEEECChHH
Confidence            45999999999999999999999999999999988775 333366766555 45569999996443