Psyllid ID: psy11246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MEKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEcccccccccHHHHHHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccEHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHEEEEEEccccccccccHHHHHcHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEKKDLQAEIESHKDVYSSLNTSGkrllgsltsqDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSvtlqpgiqypidtlafttlsditsliwyk
Flexible Loop (DISEMBL)
MEKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Low Complexity Region (SEG)
MEKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Disordered region (IsUnstruct)
*******************************************LDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWY*
Disordered Region (DISOPRED)
****DLQAEIESHKDVYSS********************LQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Disordered Region (DISEMBL)
**************DVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Disordered Region (DISPRO)
***KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MExxxxxxxxxxxxxxxxxxxxxGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSDITSLIWYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9VDW3	1669	Dystrophin, isoform B OS=	yes	N/A	0.584	0.035	0.711	5e-19
Q9VDW6	3598	Dystrophin, isoforms A/C/	no	N/A	0.584	0.016	0.711	5e-19
Q0KI50	1854	Dystrophin, isoform D OS=	no	N/A	0.584	0.031	0.694	8e-19
Q5GN48	3674	Dystrophin OS=Sus scrofa	yes	N/A	0.584	0.016	0.525	1e-12
P11533	3660	Dystrophin OS=Gallus gall	yes	N/A	0.584	0.016	0.525	3e-12
O97592	3680	Dystrophin OS=Canis famil	yes	N/A	0.584	0.016	0.525	3e-12
P11532	3685	Dystrophin OS=Homo sapien	no	N/A	0.574	0.015	0.542	5e-12
P11531	3678	Dystrophin OS=Mus musculu	yes	N/A	0.514	0.014	0.508	2e-11
P46939	3433	Utrophin OS=Homo sapiens	no	N/A	0.574	0.016	0.440	2e-10

>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 55/59 (93%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
           KDLQ+EIE+H+ VY  L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct: 685 KDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 743

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1 SV=3

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+ VY  L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct: 2513 KDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 2571

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. Both det and Dg are required for maintenance of early dpp signaling in the presumptive crossvein. Isoform A is not required to maintain muscle integrity, but plays a role in neuromuscular homeostasis by regulating neurotransmitter release. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 55/59 (93%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
           +DLQ+EIE+H+ VY  L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct: 870 QDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 928

Required for the maintenance of appropriate synaptic retrograde communication and the stabilization of muscle cell architecture or physiology. May play a role in anchoring the cytoskeleton to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +DLQ EIE+H D+Y +L+ +G+++L SL   DDA++LQRRLD MN +W  L+ +SL IR
Sbjct: 2728 QDLQGEIEAHTDIYHNLDENGQKILRSLEGSDDAILLQRRLDNMNFKWSELRKKSLNIR 2786

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Sus scrofa (taxid: 9823)

>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 46/59 (77%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +DLQAEI++H D++ +L+ +G+++L SL   +DAV+LQRRLD MN RW  L+ +SL IR
Sbjct: 2736 QDLQAEIDAHTDIFHNLDENGQKILRSLEGSEDAVLLQRRLDNMNFRWSELRKKSLNIR 2794

May play a role in anchoring the cytoskeleton to the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +DLQ EIE+H D+Y +L+ +G+++L SL   DDA +LQRRLD MN +W  L+ +SL IR
Sbjct: 2734 QDLQGEIEAHTDIYHNLDENGQKVLRSLEGSDDAALLQRRLDNMNFKWSELRKKSLNIR 2792

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Canis familiaris (taxid: 9615)

>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct: 2739 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 2797

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Homo sapiens (taxid: 9606)

>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +DLQ EIE+H D+Y +L+ +G+++L SL   D+A +LQRRLD MN +W  L+ +SL IR
Sbjct: 2732 QDLQGEIETHTDIYHNLDENGQKILRSLEGSDEAPLLQRRLDNMNFKWSELQKKSLNIR 2790

Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.

Mus musculus (taxid: 10090)

>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 47/59 (79%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +D+QAEI++H D++ S++ + ++++ +L + ++A MLQ RLD+MNQRW+ LK +S +IR
Sbjct: 2493 QDIQAEIDAHNDIFKSIDGNRQKMVKALGNSEEATMLQHRLDDMNQRWNDLKAKSASIR 2551

May play a role in anchoring the cytoskeleton to the plasma membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
242011409	952	dystrophin, putative [Pediculus humanus	0.574	0.060	0.827	2e-21
350413111	4082	PREDICTED: dystrophin, isoforms A/C/F/G/	0.584	0.014	0.779	1e-20
383862415	4129	PREDICTED: dystrophin, isoforms A/C/F/G/	0.584	0.014	0.779	2e-20
350413109	3622	PREDICTED: dystrophin, isoforms A/C/F/G/	0.584	0.016	0.779	2e-20
380022121	4111	PREDICTED: LOW QUALITY PROTEIN: dystroph	0.584	0.014	0.779	2e-20
350413107	3658	PREDICTED: dystrophin, isoforms A/C/F/G/	0.584	0.016	0.779	2e-20
328792482	4079	PREDICTED: dystrophin, isoforms A/C/F/G/	0.584	0.014	0.779	2e-20
357610026	649	hypothetical protein KGM_19575 [Danaus p	0.594	0.092	0.75	3e-20
340709163	4082	PREDICTED: LOW QUALITY PROTEIN: dystroph	0.584	0.014	0.762	4e-20
322785412	69	hypothetical protein SINV_12191 [Solenop	0.584	0.855	0.762	7e-20

>gi|242011409|ref|XP_002426443.1| dystrophin, putative [Pediculus humanus corporis] gi|212510548|gb|EEB13705.1| dystrophin, putative [Pediculus humanus corporis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 56/58 (96%)

Query: 5  DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
          DLQ+EIESH+DV+SSLN +GK+LLGSL SQDDAVMLQRRLDEMNQRWHHLK++S+AIR
Sbjct: 42 DLQSEIESHRDVFSSLNGAGKKLLGSLASQDDAVMLQRRLDEMNQRWHHLKDKSMAIR 99

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413111|ref|XP_003489883.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 3 [Bombus impatiens]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 3130 KDLQSEIETHRDVYASLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 3188

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862415|ref|XP_003706679.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like [Megachile rotundata]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 3177 KDLQSEIETHRDVYASLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 3235

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413109|ref|XP_003489882.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 2 [Bombus impatiens]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 2706 KDLQSEIETHRDVYASLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 2764

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022121|ref|XP_003694902.1| PREDICTED: LOW QUALITY PROTEIN: dystrophin, isoforms A/C/F/G/H-like [Apis florea]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 3159 KDLQSEIETHRDVYTSLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 3217

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413107|ref|XP_003489881.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like isoform 1 [Bombus impatiens]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 2706 KDLQSEIETHRDVYASLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 2764

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792482|ref|XP_003251732.1| PREDICTED: dystrophin, isoforms A/C/F/G/H-like [Apis mellifera]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            KDLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 3127 KDLQSEIETHRDVYTSLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 3185

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610026|gb|EHJ66794.1| hypothetical protein KGM_19575 [Danaus plexippus]

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 56/60 (93%)

Query: 3   KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
           + DLQ+EIE+H+DVY+SL  +G+RLLGSL+SQ+DAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 414 ESDLQSEIETHRDVYASLTGTGRRLLGSLSSQEDAVMLQRRLDEMNQRWHHLKAKSMAIR 473

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709163|ref|XP_003393182.1| PREDICTED: LOW QUALITY PROTEIN: dystrophin, isoforms A/C/F/G/H-like [Bombus terrestris]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 55/59 (93%)

Query: 4    KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +DLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 3130 QDLQSEIETHRDVYASLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 3188

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785412|gb|EFZ12085.1| hypothetical protein SINV_12191 [Solenopsis invicta]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 55/59 (93%)

Query: 4  KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
          +DLQ+EIE+H+DVY+SLN +G++LL SL SQDDAVMLQRRLDEMNQRWHHLK +S+AIR
Sbjct: 11 QDLQSEIETHRDVYASLNGTGRKLLSSLASQDDAVMLQRRLDEMNQRWHHLKAKSMAIR 69

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0260003	3598	Dys "Dystrophin" [Drosophila m	0.584	0.016	0.711	1.7e-16
ZFIN|ZDB-GENE-010426-1	3633	dmd "dystrophin" [Danio rerio	0.584	0.016	0.525	2.1e-11
UNIPROTKB|F5GZY3	1115	DMD "Dystrophin" [Homo sapiens	0.584	0.052	0.542	3.1e-11
UNIPROTKB|E7EQR9	1133	DMD "Dystrophin" [Homo sapiens	0.584	0.052	0.542	3.2e-11
UNIPROTKB|E7EQS5	1225	DMD "Dystrophin" [Homo sapiens	0.584	0.048	0.542	3.5e-11
UNIPROTKB|F8VX32	1230	DMD "Dystrophin" [Homo sapiens	0.584	0.047	0.542	3.5e-11
UNIPROTKB|E7ESB2	1243	DMD "Dystrophin" [Homo sapiens	0.584	0.047	0.542	3.5e-11
UNIPROTKB|H0Y304	1386	DMD "Dystrophin" [Homo sapiens	0.584	0.042	0.542	4e-11
UNIPROTKB|H0Y8D5	1424	DMD "Dystrophin" [Homo sapiens	0.584	0.041	0.542	4.2e-11
UNIPROTKB|Q5GN48	3674	DMD "Dystrophin" [Sus scrofa (	0.584	0.016	0.525	4.5e-11

FB|FBgn0260003 Dys "Dystrophin" [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 42/59 (71%), Positives = 55/59 (93%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             KDLQ+EIE+H+ VY  L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct:  2513 KDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 2571

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005198 "structural molecule activity" evidence=ISS

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=ISS;NAS;IPI

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007517 "muscle organ development" evidence=ISS;IMP

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0007274 "neuromuscular synaptic transmission" evidence=IDA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0050699 "WW domain binding" evidence=IPI

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0046928 "regulation of neurotransmitter secretion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-010426-1 dmd "dystrophin" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 31/59 (52%), Positives = 47/59 (79%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQAEI++H++ Y SL+ +G R++ SL   D+AV+LQ+RLD+M QRWH L N+ ++IR
Sbjct:  2672 QDLQAEIDAHRETYHSLDENGHRIVSSLEGTDNAVVLQKRLDDMGQRWHELCNKVMSIR 2730

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IDA

GO:0016203 "muscle attachment" evidence=IGI;IMP

GO:0048741 "skeletal muscle fiber development" evidence=IMP

GO:0007525 "somatic muscle development" evidence=IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=NAS

GO:0045214 "sarcomere organization" evidence=IMP

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0061053 "somite development" evidence=IMP

UNIPROTKB|F5GZY3 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   279 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 337

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E7EQR9 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   279 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 337

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E7EQS5 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   279 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 337

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008065 "establishment of blood-nerve barrier" evidence=IEA

GO:0014904 "myotube cell development" evidence=IEA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=IEA

GO:0021629 "olfactory nerve structural organization" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030055 "cell-substrate junction" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0044306 "neuron projection terminus" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045213 "neurotransmitter receptor metabolic process" evidence=IEA

GO:0046716 "muscle cell homeostasis" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0051647 "nucleus localization" evidence=IEA

GO:0060857 "establishment of glial blood-brain barrier" evidence=IEA

UNIPROTKB|F8VX32 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   279 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 337

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E7ESB2 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   279 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 337

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H0Y304 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   435 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 493

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H0Y8D5 DMD "Dystrophin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 32/59 (54%), Positives = 44/59 (74%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H DVY +L+ + +++L SL   DDAV+LQRRLD MN +W  L+ +SL IR
Sbjct:   468 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 526

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5GN48 DMD "Dystrophin" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:     4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             +DLQ EIE+H D+Y +L+ +G+++L SL   DDA++LQRRLD MN +W  L+ +SL IR
Sbjct:  2728 QDLQGEIEAHTDIYHNLDENGQKILRSLEGSDDAILLQRRLDNMNFKWSELRKKSLNIR 2786

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O97592	DMD_CANFA	No assigned EC number	0.5254	0.5841	0.0160	yes	N/A
Q5GN48	DMD_PIG	No assigned EC number	0.5254	0.5841	0.0160	yes	N/A
P11531	DMD_MOUSE	No assigned EC number	0.5084	0.5148	0.0141	yes	N/A
P11533	DMD_CHICK	No assigned EC number	0.5254	0.5841	0.0161	yes	N/A
Q9VDW3	DMDB_DROME	No assigned EC number	0.7118	0.5841	0.0353	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
smart00150	101	smart00150, SPEC, Spectrin repeats	4e-07
cd00176	213	cd00176, SPEC, Spectrin repeats, found in several	5e-06
cd00176	213	cd00176, SPEC, Spectrin repeats, found in several	9e-05
pfam00435	105	pfam00435, Spectrin, Spectrin repeat	7e-04

>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           +  +AE+E+H++   +LN  G++L+       DA  ++ RL+E+N+RW  LK      R 
Sbjct: 41  EAFEAELEAHEERVEALNELGEQLIEE--GHPDAEEIEERLEELNERWEELKEL-AEERR 97

Query: 64  QSL 66
           Q L
Sbjct: 98  QKL 100

Length = 101

>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + L+AE+ +H++   +LN  G++L+       DA  +Q RL+E+NQRW  L+      R 
Sbjct: 43  EALEAELAAHEERVEALNELGEQLIEE--GHPDAEEIQERLEELNQRWEELREL-AEERR 99

Query: 64  QSL 66
           Q L
Sbjct: 100 QRL 102

Length = 213

>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           K+L+ E+E+H+    SLN   + LL       D   ++ +L+E+N+RW  L       R 
Sbjct: 149 KELEEELEAHEPRLKSLNELAEELLEEGHPDADEE-IEEKLEELNERWEELLEL-AEERQ 206

Query: 64  QSL 66
           + L
Sbjct: 207 KKL 209

Length = 213

>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           K L+AE+ +H+D   +LN   ++L+       + +  Q RL+E+N+RW  L     A R 
Sbjct: 44  KALEAELAAHQDRVEALNELAEKLIAEGHYASEEI--QERLEELNERWEQLLEL-AAERK 100

Query: 64  QSL 66
           Q L
Sbjct: 101 QKL 103

Spectrin repeat-domains are found in several proteins involved in cytoskeletal structure. These include spectrin, alpha-actinin and dystrophin. The sequence repeat used in this family is taken from the structural repeat in reference. The spectrin domain- repeat forms a three helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C. Although the domain occurs in ultiple repeats along sequences, the domains are actually stable on their own - ie they act, biophysically, like domains rather than repeats that along function when aggregated. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG4286|consensus	966		99.69
cd00176	213	SPEC Spectrin repeats, found in several proteins i	98.9
smart00150	101	SPEC Spectrin repeats.	98.79
PF00435	105	Spectrin: Spectrin repeat; InterPro: IPR002017 Spe	98.67
cd00176	213	SPEC Spectrin repeats, found in several proteins i	97.96
KOG0517|consensus	2473		96.65
KOG0517|consensus	2473		95.57
KOG0040|consensus	2399		83.9
KOG0040|consensus	2399		81.24

>KOG4286|consensus

Probab=99.69  E-value=1.4e-17  Score=146.65  Aligned_cols=79  Identities=35%  Similarity=0.482  Sum_probs=75.0

Q ss_pred             chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246          2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY   81 (101)
Q Consensus         2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E   81 (101)
                      ++++++++|++     ++++.+|++|+.+|++++++++|+  +  ||+||++||+|+++||+|||+++++|++|+.+|+|
T Consensus        40 ~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~--~--mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~e  110 (966)
T KOG4286|consen   40 QWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ--L--MNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQE  110 (966)
T ss_pred             HHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            57899999999     689999999999999999999999  3  99999999999999999999999999999999999


Q ss_pred             hhhhhhhh
Q psy11246         82 PIDTLAFT   89 (101)
Q Consensus        82 li~WL~~~   89 (101)
                      |+.||+..
T Consensus       111 l~~wl~~k  118 (966)
T KOG4286|consen  111 LLVWLQLK  118 (966)
T ss_pred             HHHHHHhh
Confidence            99999865

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=98.90  E-value=6.5e-09  Score=72.47  Aligned_cols=87  Identities=25%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246          2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY   81 (101)
Q Consensus         2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E   81 (101)
                      +.+.++.+|..|.+.+..++..|+.|+...  ++++..+..+++.||.||+.|++.+.+++.+|+...+.+..++..+. 
T Consensus        41 ~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~--~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-  117 (213)
T cd00176          41 KHEALEAELAAHEERVEALNELGEQLIEEG--HPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-  117 (213)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            356889999999999999999999999987  38999999999999999999999999999999999999999987665 


Q ss_pred             hhhhhhhhhh
Q psy11246         82 PIDTLAFTTL   91 (101)
Q Consensus        82 li~WL~~~~~   91 (101)
                      +..|+..+..
T Consensus       118 l~~wl~~~e~  127 (213)
T cd00176         118 LEQWLEEKEA  127 (213)
T ss_pred             HHHHHHHHHH
Confidence            9999987753

>smart00150 SPEC Spectrin repeats

Probab=98.79  E-value=1.6e-08  Score=63.82  Aligned_cols=62  Identities=32%  Similarity=0.560  Sum_probs=57.9

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      .+.++.+|..|++.+..++..|..|+..  +++++..++.+++.||.||..|+..+.+++.+|+
T Consensus        40 ~~~~~~e~~~~~~~v~~~~~~~~~L~~~--~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~  101 (101)
T smart00150       40 HEALEAELEAHEERVEALNELGEQLIEE--GHPDAEEIEERLEELNERWEELKELAEERRQKLE  101 (101)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5689999999999999999999999987  6788999999999999999999999999999884

>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure

Probab=98.67  E-value=9e-08  Score=60.40  Aligned_cols=64  Identities=33%  Similarity=0.439  Sum_probs=58.7

Q ss_pred             chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246          2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLI   67 (101)
Q Consensus         2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~   67 (101)
                      +.+.++++|..|++-+..++..|..| ... +++++..++.+++.||.||..|+..+.+++.+|+.
T Consensus        42 ~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~-~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee  105 (105)
T PF00435_consen   42 KHKELQEEIESRQERLESLNEQAQQL-IDS-GPEDSDEIQEKLEELNQRWEALCELVEERRQKLEE  105 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHT-THTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHH-HHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            35689999999999999999999999 454 69999999999999999999999999999999974

These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=97.96  E-value=2.8e-05  Score=54.12  Aligned_cols=65  Identities=26%  Similarity=0.384  Sum_probs=59.5

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF   68 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~   68 (101)
                      .+.++.+|..|++.+..++..|..++... .++++..++.+++.++.+|..|+..+.+++.+|+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~  212 (213)
T cd00176         148 HKELEEELEAHEPRLKSLNELAEELLEEG-HPDADEEIEEKLEELNERWEELLELAEERQKKLEEA  212 (213)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999888 666669999999999999999999999999999764

>KOG0517|consensus

Probab=96.65  E-value=0.0043  Score=60.57  Aligned_cols=84  Identities=13%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhh
Q psy11246          4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPI   83 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli   83 (101)
                      +.|+.||.+|.+.+..+...|+.+|..-  ++.++-++.|++.|+.+|..+..-+..+++||+.+. ..-.|..+.+++-
T Consensus       673 KalE~E~~~~~a~~~~~~~~G~~Lvae~--~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~-~~~QffaDAdd~~  749 (2473)
T KOG0517|consen  673 KALEDEMRGRDAHLKQMIREGEELVAEG--HPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEAR-ELYQFFADADDAE  749 (2473)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHH
Confidence            5799999999999999999999999875  444557899999999999999999999999998765 4678999999999


Q ss_pred             hhhhhhh
Q psy11246         84 DTLAFTT   90 (101)
Q Consensus        84 ~WL~~~~   90 (101)
                      .||-++-
T Consensus       750 sWl~d~~  756 (2473)
T KOG0517|consen  750 SWLRDAL  756 (2473)
T ss_pred             HHHHHHH
Confidence            9997653

>KOG0517|consensus

Probab=95.57  E-value=0.041  Score=54.16  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=74.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.|++||..|+|-+..+=.+|+.++.+  +.++|..+..++..+-+-|.+++.....++.+|..+- ..-.|--+-.|+
T Consensus      1522 ~q~Lq~EI~~H~prI~~vl~~gq~Li~~--~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~-kaQQY~fDaaE~ 1598 (2473)
T KOG0517|consen 1522 NQTLQAEIKGHQPRINDVLERGQSLIDS--GHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAV-KAQQYYFDAAEA 1598 (2473)
T ss_pred             hHHHHHHHHhcchHHHHHHHHhHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence            4689999999999999998999887766  5779999999999999999999999999999997654 456777889999


Q ss_pred             hhhhhhhhh
Q psy11246         83 IDTLAFTTL   91 (101)
Q Consensus        83 i~WL~~~~~   91 (101)
                      =.|+.+..+
T Consensus      1599 EaWm~Eqel 1607 (2473)
T KOG0517|consen 1599 EAWMGEQEL 1607 (2473)
T ss_pred             HHHHhhhHH
Confidence            999987644

>KOG0040|consensus

Probab=83.90  E-value=1.8  Score=42.91  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=67.6

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.+.++|.+|.+...++-+.|-+++..+  +--+.....++..+|+-|+.++++..-+|.-|+..... -++..++.|=
T Consensus       826 ~q~~~~~ia~he~ri~~i~~r~~~m~~~~--~f~aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q~-~qy~ad~~ea  902 (2399)
T KOG0040|consen  826 HQALLAEIANHEPRIQEVTSRGNKMVEEG--HFAAEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQA-QQYLADANEA  902 (2399)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH-HHHHHHHhhH
Confidence            46889999999999999999999999886  44566679999999999999999999888888766544 4555666666


Q ss_pred             hhhhhh
Q psy11246         83 IDTLAF   88 (101)
Q Consensus        83 i~WL~~   88 (101)
                      -.|...
T Consensus       903 e~w~~e  908 (2399)
T KOG0040|consen  903 ESWMRE  908 (2399)
T ss_pred             HHHhhc
Confidence            667543

>KOG0040|consensus

Probab=81.24  E-value=6.8  Score=39.18  Aligned_cols=85  Identities=25%  Similarity=0.221  Sum_probs=67.8

Q ss_pred             HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhh
Q psy11246          4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPI   83 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli   83 (101)
                      +-+++.|.+|.+-|.++|.--.-++.+  |.-+.+-.+++-+..|+|--.|+.=...+|++|...-..---+++.++| -
T Consensus      1633 qlle~di~a~ed~~kd~n~qadSll~s--~~f~~~~i~dkr~~i~~r~~~V~~laa~~r~kl~ea~~L~qff~d~~De-e 1709 (2399)
T KOG0040|consen 1633 QLLEADIVAHEDRLKDLNTQADSLLES--GQFDTDQIVEKRDNINKRFLNVKELAAARRAKLNEALALHQFFRDIDDE-E 1709 (2399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhh--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-H
Confidence            357899999999999999887555544  3457778899999999999999999999999998776655555555544 8


Q ss_pred             hhhhhhhh
Q psy11246         84 DTLAFTTL   91 (101)
Q Consensus        84 ~WL~~~~~   91 (101)
                      .|+.+.-+
T Consensus      1710 swikek~l 1717 (2399)
T KOG0040|consen 1710 SWIKEKKL 1717 (2399)
T ss_pred             HHHHHHHH
Confidence            89987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3lbx_A	161	Spectrin alpha chain, erythrocyte; tetramer, compl	2e-07
3f31_A	149	Spectrin alpha chain, brain; LONE helix followed b	2e-07
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	5e-07
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	3e-06
2iak_A	224	Bullous pemphigoid antigen 1, isoform 5; triple he	5e-06
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	9e-06
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	5e-05
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	1e-05
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	9e-04
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	1e-05
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	2e-05
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	6e-05
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	2e-04
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	6e-05
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	1e-04
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	1e-04
3lbx_B	185	Beta-I spectrin, spectrin beta chain, erythrocyte;	2e-04

>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A Length = 161

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + L+AE+++   + S L  + +       S  +    +  ++E+   W  L   +L    
Sbjct: 98  QSLEAEVQTKSRLMSELEKTREERFTMGHSAHEET--KAHIEELRHLWDLLLELTLEKGD 155

Query: 64  Q 64
           Q
Sbjct: 156 Q 156

>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} Length = 149

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           +  +AE++++      L+ +G  ++        +  ++ RL E++++W  L  +     +
Sbjct: 88  QAFEAEVQANSGAIVKLDETGNLMISE--GHFASETIRTRLMELHRQWELLLEKMREKGI 145

Query: 64  Q 64
           +
Sbjct: 146 K 146

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Length = 218

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
              + E+               RL  +  + + A  +Q +  E++  W  L +     R 
Sbjct: 150 TAFERELHLLGVQVQQFQDVATRLQ-TAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRT 208

Query: 64  Q 64
           Q
Sbjct: 209 Q 209

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens} Length = 210

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
             L  E+E  +     L  +G RLL           ++     +  +W  +      I 
Sbjct: 148 SALMRELELKEKKIKELQNAGDRLL--REDHPARPTVESFQAALQTQWSWMLQLCCCIE 204

>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} Length = 224

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
            +L  E+E  ++   ++    ++LL    +    + ++     M  +W  +      + 
Sbjct: 163 AELMRELEQKEESIKAVQEIAEQLLLE--NHPARLTIEAYRAAMQTQWSWILQLCQCVE 219

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
           K L+AE+ +H+     +  +GK+L     +      +Q+RL +    W  LK  + A  
Sbjct: 152 KRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARG 208

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + L+A+I +H+D    LN+    L+ S  S  D   ++ + + +N R+  +K+ + A R 
Sbjct: 46  QLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSMAAARRA 103

Query: 64  Q 64
           +
Sbjct: 104 K 104

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
              + ++               RL  +  + + A  +Q +  E++  W  L +     R 
Sbjct: 259 TAFERDVHLLGVQVQQFQDVATRLQTAY-AGEKAEAIQNKEQEVSAAWQALLDACAGRRT 317

Query: 64  Q 64
           Q
Sbjct: 318 Q 318

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326

 Score = 35.7 bits (82), Expect = 9e-04
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
              Q  +E +      L +  + LL +     +   + R   ++++ +  LK+ +   R 
Sbjct: 47  LRQQRAVEDYGRNIKQLASRAQGLLSA--GHPEGEQIIRLQGQVDKHYAGLKDVAEE-RK 103

Query: 64  QSL 66
           + L
Sbjct: 104 RKL 106

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens} Length = 283

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
             L  E+E  +     L  +G RLL           ++     +  +W  +      I  
Sbjct: 51  SALMRELELKEKKIKELQNAGDRLLRE--DHPARPTVESFQAALQTQWSWMLQLCCCIEA 108

Query: 64  Q 64
            
Sbjct: 109 H 109

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Length = 214

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
             ++ EI+ H+D Y  +  SG++++    +  + ++L +RL+ ++  W  L  R    R 
Sbjct: 43  AGIKDEIDGHQDSYQRVKESGEKVI-QGQTDPEYLLLGQRLEGLDTGWDALG-RMWESRS 100

Query: 64  QSL 66
            +L
Sbjct: 101 HTL 103

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           ++ + EI++    + +    G++LL        +  ++++LD ++Q    L+   +  RM
Sbjct: 56  QEHRTEIDARAGTFQAFEQFGQQLLAH--GHYASPEIKQKLDILDQERADLEKAWVQRRM 113

Query: 64  Q 64
            
Sbjct: 114 M 114

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Length = 218

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
           +D    I   ++  ++L     +L+ +         +  R +E+  RW  LK + +  R
Sbjct: 162 EDFDKAINVQEEKIAALQAFADQLIAA--GHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + L+A+I +H+D    LN+    L+ S  S  D   ++ + + +N R+  +K+   A R 
Sbjct: 46  QLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSM-AAARR 102

Query: 64  QSL 66
             L
Sbjct: 103 AKL 105

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
           K L+AE+ +H+     +  +GK+L     +      +Q+RL +    W  LK  + A  
Sbjct: 152 KRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARG 208

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Length = 213

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 4  KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
          K L+AE+ +H+    S+  +GK+L     +      +Q+RL +    W  LK  + A  
Sbjct: 43 KRLEAELAAHEPAIQSVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARG 99

>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Length = 185

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + + AEIE+    +S+    G+ LL        +  ++ +L ++  R   +  +  A   
Sbjct: 47  QGINAEIETRSKNFSACLELGESLLQR--QHQASEEIREKLQQVMSRRKEMNEKWEARWE 104

Query: 64  Q 64
           +
Sbjct: 105 R 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	99.17
3uun_A	119	Dystrophin; triple helical, cell structure and sta	99.13
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	99.09
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	99.07
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	99.04
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	98.98
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	98.97
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	98.88
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	98.87
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	98.84
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	98.79
3lbx_B	185	Beta-I spectrin, spectrin beta chain, erythrocyte;	98.78
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	98.77
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	98.66
3lbx_A	161	Spectrin alpha chain, erythrocyte; tetramer, compl	98.65
1quu_A	250	Human skeletal muscle alpha-actinin 2; triple-heli	98.64
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	98.63
3f31_A	149	Spectrin alpha chain, brain; LONE helix followed b	98.51
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	98.49
3lbx_A	161	Spectrin alpha chain, erythrocyte; tetramer, compl	98.49
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	98.43
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	98.4
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.31
3f31_A	149	Spectrin alpha chain, brain; LONE helix followed b	98.29
2spc_A	107	Spectrin; cytoskeleton; 1.80A {Drosophila melanoga	98.29
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	98.27
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.27
2iak_A	224	Bullous pemphigoid antigen 1, isoform 5; triple he	98.2
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	98.2
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	98.11
2iak_A	224	Bullous pemphigoid antigen 1, isoform 5; triple he	97.94
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	97.8
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	97.75
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	97.45
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	97.36
1quu_A	250	Human skeletal muscle alpha-actinin 2; triple-heli	96.41
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	93.03
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	92.78
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	91.99
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	91.59
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	87.56

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=99.17  E-value=8.5e-11  Score=76.93  Aligned_cols=67  Identities=19%  Similarity=0.345  Sum_probs=61.0

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccC-CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLT-SQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY   69 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~-s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~   69 (101)
                      .+.++++|.+|++.|.+++.+|+.++.... +++++..++.+++.||.||+.|+.++.+++.+|+.+-
T Consensus        45 h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL  112 (118)
T 3uul_A           45 HETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDAL  112 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999997642 5778999999999999999999999999999998763

>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=75.54  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=62.4

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhccc-CCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSL-TSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS   72 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L-~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~   72 (101)
                      .+.++.+|.+|++.+.+++.+|+.|+..- .+++++..++.+++.||.||..|+..+.+++.+|+.+-..+
T Consensus        45 h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~  115 (119)
T 3uun_A           45 HEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL  115 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999998754 25778999999999999999999999999999998775443

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1

Probab=99.09  E-value=2e-10  Score=81.92  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++.+|.+|++.+.+++..|..++..  ++.|+..++.+++.+|.||..|+..+..+|.+|+.+.. +..|..+++++
T Consensus        45 h~~le~~i~~~~~~v~~l~~~~~~L~~~--~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-l~qf~~~~~~~  121 (216)
T 1u5p_A           45 HQLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDE  121 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4689999999999999999999999876  57789999999999999999999999999999998876 68899999999


Q ss_pred             hhhhhhh
Q psy11246         83 IDTLAFT   89 (101)
Q Consensus        83 i~WL~~~   89 (101)
                      ..||...
T Consensus       122 ~~Wl~e~  128 (216)
T 1u5p_A          122 ESWIKEK  128 (216)
T ss_dssp             HHHHHHH
T ss_pred             HhHHHHH
Confidence            9999886

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=99.07  E-value=3.7e-10  Score=80.42  Aligned_cols=86  Identities=16%  Similarity=0.295  Sum_probs=78.3

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .++++++|.+|++.|.++..+|+.|+..- +.++++.++.+|+.|+.+|+.|+..+..++.+|+..-+ +..|..+..++
T Consensus        42 h~~~~~ei~~~~~~~~~~~~~g~~L~~~~-~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~-l~~F~~~~~~~  119 (214)
T 1s35_A           42 HAGIKDEIDGHQDSYQRVKESGEKVIQGQ-TDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQA  119 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            46899999999999999999999999874 45688999999999999999999999999999997765 89999999999


Q ss_pred             hhhhhhhh
Q psy11246         83 IDTLAFTT   90 (101)
Q Consensus        83 i~WL~~~~   90 (101)
                      ..||...-
T Consensus       120 ~~Wl~~~E  127 (214)
T 1s35_A          120 EAILSNQE  127 (214)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998653

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A

Probab=99.04  E-value=4.7e-10  Score=79.40  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++.+|.+|++.+.++..+|+.++..  +..++..++.+++.+|.+|..|+..+..++.+|+...+ ...|..+++++
T Consensus        42 h~~~~~ei~~~~~~v~~v~~~g~~L~~~--~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-~~~f~~~~~e~  118 (213)
T 1cun_A           42 HKRLEAELAAHEPAIQSVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEE  118 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4578999999999999999999999886  56788999999999999999999999999999999886 48999999999


Q ss_pred             hhhhhhh
Q psy11246         83 IDTLAFT   89 (101)
Q Consensus        83 i~WL~~~   89 (101)
                      ..||.+.
T Consensus       119 ~~Wl~~~  125 (213)
T 1cun_A          119 EAWINEK  125 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999985

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=98.98  E-value=1.1e-09  Score=82.20  Aligned_cols=86  Identities=14%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++.+|.+|++.+.+++..|..|+... +++++..++.+++.||.+|..|+..+.++|.+|+.... +..|...++++
T Consensus       154 h~~~~~~l~~~~~~v~~l~~~a~~L~~~~-~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~-~~~F~~~~~~l  231 (323)
T 3edv_A          154 HTTFEHDIQALGTQVRQLQEDAARLQAAY-AGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGD-KFRFFSMVRDL  231 (323)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            35788999999999999999999999876 56788999999999999999999999999999999875 68999999999


Q ss_pred             hhhhhhhh
Q psy11246         83 IDTLAFTT   90 (101)
Q Consensus        83 i~WL~~~~   90 (101)
                      ..||..+.
T Consensus       232 ~~Wl~~~~  239 (323)
T 3edv_A          232 MLWMEDVI  239 (323)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A

Probab=98.97  E-value=1.4e-09  Score=78.53  Aligned_cols=85  Identities=13%  Similarity=0.070  Sum_probs=77.2

Q ss_pred             hHHHHHHHhh-hhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246          3 KKDLQAEIES-HKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY   81 (101)
Q Consensus         3 ~~eLqaeI~s-h~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E   81 (101)
                      +++++.++.+ |++-+.++|..|..++..  ++++++.++.+++.||.||..++..+..++.+|+.+. .+.+|..++.+
T Consensus        43 ~~~f~~el~~~~~~~v~~v~~~~~~L~~~--~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~F~~~~~e  119 (218)
T 3edu_A           43 FRDFARETGAIGQERVDNVNAFIERLIDA--GHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAE  119 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4578899998 899999999999999985  5678899999999999999999999999999999885 78899999999


Q ss_pred             hhhhhhhhh
Q psy11246         82 PIDTLAFTT   90 (101)
Q Consensus        82 li~WL~~~~   90 (101)
                      +..||.++.
T Consensus       120 ~~~Wl~ek~  128 (218)
T 3edu_A          120 ILGLIDEKH  128 (218)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1

Probab=98.88  E-value=4e-09  Score=78.62  Aligned_cols=85  Identities=18%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++++|.+|.+.+..+...|+.|+..  +..++..++.+++.|+.+|..|+..+..++.||+..-. +..|..+..++
T Consensus       151 h~~l~~el~~~~~~i~~l~~~g~~L~~~--~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~~~~-~~qf~~~~~~~  227 (322)
T 1u4q_A          151 HKRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEE  227 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4578999999999999999999999875  46688999999999999999999999999999998655 78999999999


Q ss_pred             hhhhhhhh
Q psy11246         83 IDTLAFTT   90 (101)
Q Consensus        83 i~WL~~~~   90 (101)
                      ..||.+.-
T Consensus       228 ~~Wl~~~e  235 (322)
T 1u4q_A          228 EAWINEKM  235 (322)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=98.87  E-value=5.2e-09  Score=78.43  Aligned_cols=85  Identities=12%  Similarity=0.128  Sum_probs=77.0

Q ss_pred             hHHHHHHHhh-hhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246          3 KKDLQAEIES-HKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY   81 (101)
Q Consensus         3 ~~eLqaeI~s-h~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E   81 (101)
                      +.+++.++.+ |++.+.++|..|..++..  ++++++.++.+++.+|.||..|+..+..++.+|+.+. .+..|..++.+
T Consensus        48 ~~~f~~el~~~~~~~v~~v~~~~~~L~~~--~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~f~~~~~e  124 (323)
T 3edv_A           48 FREFARDTGNIGQERVDTVNHLADELINS--GHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKE  124 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4578889998 889999999999999886  5778999999999999999999999999999999877 67889999999


Q ss_pred             hhhhhhhhh
Q psy11246         82 PIDTLAFTT   90 (101)
Q Consensus        82 li~WL~~~~   90 (101)
                      +..||+...
T Consensus       125 ~~~Wl~~k~  133 (323)
T 3edv_A          125 IFGRIQDKH  133 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999753

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1

Probab=98.84  E-value=6.2e-09  Score=77.59  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++.+|.+|++.+..++..|..++..  ++.|+..++.++..++.||..|+..+.++|.+|+.... +..|..++.++
T Consensus        45 h~~le~~i~~~~~~v~~l~~~a~~l~~~--~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-l~~f~~~~~~~  121 (322)
T 1u4q_A           45 HQLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDE  121 (322)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHTTC--CSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4578999999999999999999999873  67889999999999999999999999999999998887 78899999999


Q ss_pred             hhhhhhh
Q psy11246         83 IDTLAFT   89 (101)
Q Consensus        83 i~WL~~~   89 (101)
                      ..||...
T Consensus       122 ~~Wl~e~  128 (322)
T 1u4q_A          122 ESWIKEK  128 (322)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A

Probab=98.79  E-value=1.3e-08  Score=76.21  Aligned_cols=85  Identities=12%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++.+|.+|++.+..++..|+.++..  +.+|+..++.+++.++.+|..|+..+.++|.+|+... .+..|...+.++
T Consensus        46 h~~~~~el~~~~~~v~~l~~~~~~L~~~--~~~~~~~i~~~l~~l~~~w~~L~~~~~~R~~~Le~~l-~l~~f~~~~~~l  122 (326)
T 3kbt_A           46 HLRQQRAVEDYGRNIKQLASRAQGLLSA--GHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMY-HLFQLKRETDDL  122 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            4578999999999999999999999875  4568999999999999999999999999999999887 668999999999


Q ss_pred             hhhhhhhh
Q psy11246         83 IDTLAFTT   90 (101)
Q Consensus        83 i~WL~~~~   90 (101)
                      ..||..+.
T Consensus       123 ~~Wl~~~e  130 (326)
T 3kbt_A          123 EQWISEKE  130 (326)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}

Probab=98.78  E-value=1.7e-08  Score=71.75  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .++++.+|.+|++.|..+...|+.++..-  .++++.++.+|+.|+.+|.++++....++.+|+..-+ +..|..++.++
T Consensus        46 H~~~~~ei~~~~~~~~~l~~~G~~L~~~~--~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~-l~~F~~d~~~~  122 (185)
T 3lbx_B           46 HQGINAEIETRSKNFSACLELGESLLQRQ--HQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLE-VCQFSRDASVA  122 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHH
Confidence            36899999999999999999999999874  5678899999999999999999999999999997764 56899999999


Q ss_pred             hhhhhhh
Q psy11246         83 IDTLAFT   89 (101)
Q Consensus        83 i~WL~~~   89 (101)
                      ..||...
T Consensus       123 ~~Wl~~~  129 (185)
T 3lbx_B          123 EAWLIAQ  129 (185)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=98.77  E-value=1.7e-08  Score=72.81  Aligned_cols=84  Identities=14%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .++++++|.+|++.|.++...|+.++..-  .++++.++.+|+.|+.+|.+|++....++.+|+..-+ +..|..++.++
T Consensus        55 H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~--~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~q~l~-l~~F~~d~~~~  131 (218)
T 3fb2_A           55 HQEHRTEIDARAGTFQAFEQFGQQLLAHG--HYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE-LQLFHRDCEQA  131 (218)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            46899999999999999999999999874  4567889999999999999999999999999998774 58999999999


Q ss_pred             hhhhhhh
Q psy11246         83 IDTLAFT   89 (101)
Q Consensus        83 i~WL~~~   89 (101)
                      ..||...
T Consensus       132 ~~WL~~~  138 (218)
T 3fb2_A          132 ENWMAAR  138 (218)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A

Probab=98.66  E-value=5.3e-08  Score=72.81  Aligned_cols=85  Identities=13%  Similarity=0.051  Sum_probs=75.9

Q ss_pred             hHHHHHHHhh-hhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246          3 KKDLQAEIES-HKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY   81 (101)
Q Consensus         3 ~~eLqaeI~s-h~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E   81 (101)
                      .++++.++.+ |.+.+..++..|..++..-  +++++.++.+++.+|.||..|+..+..++.+|+.+. .+..|...+++
T Consensus       152 ~~~f~~el~~~~~~~v~~l~~~~~~L~~~~--~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~-~~~~f~~~~~e  228 (326)
T 3kbt_A          152 FRDFARETGAIGQERVDNVNAFIERLIDAG--HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAE  228 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4578889988 7889999999999999874  557889999999999999999999999999999886 57789999999


Q ss_pred             hhhhhhhhh
Q psy11246         82 PIDTLAFTT   90 (101)
Q Consensus        82 li~WL~~~~   90 (101)
                      +..||.+..
T Consensus       229 ~~~Wl~ek~  237 (326)
T 3kbt_A          229 ILGLIDEKH  237 (326)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A

Probab=98.65  E-value=5.7e-08  Score=68.81  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF   68 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~   68 (101)
                      .+.++++|.+|++.+..++..|+.++..  ++.++..++.|+++|+.+|..|+.++.+++.||+.+
T Consensus        97 H~afe~El~a~~~~~~~l~~~g~~Li~~--~~~~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eA  160 (161)
T 3lbx_A           97 HQSLEAEVQTKSRLMSELEKTREERFTM--GHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA  160 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999999999986  678999999999999999999999999999999764

>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=98.64  E-value=8.2e-08  Score=70.64  Aligned_cols=86  Identities=13%  Similarity=0.140  Sum_probs=77.8

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh-------hh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV-------TL   75 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~-------~L   75 (101)
                      .+.++++|.+|++.+..+...|+.++..  +..++..+..|++.++.+|..|+..+..+|.+|+..-....       .|
T Consensus        57 h~~~~~el~~~~~~v~~l~~~~~~L~~~--~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF  134 (250)
T 1quu_A           57 HEAFESDLAAHQDRVEQIAAIAQELNEL--DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEF  134 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999887  56778889999999999999999999999999998887775       89


Q ss_pred             hccCchhhhhhhhhh
Q psy11246         76 QPGIQYPIDTLAFTT   90 (101)
Q Consensus        76 ~~~L~Eli~WL~~~~   90 (101)
                      ....+++..||+++.
T Consensus       135 ~~~a~~~~~Wl~~~e  149 (250)
T 1quu_A          135 AKRAAPFNNWMEGAM  149 (250)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHH
Confidence            999999999997764

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=98.63  E-value=6.7e-08  Score=75.92  Aligned_cols=86  Identities=13%  Similarity=0.140  Sum_probs=76.6

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh-------hh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV-------TL   75 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~-------~L   75 (101)
                      .+.++.+|.+|++.+.++...|+.++..  +..++..++.|++.|+.+|..|+..+.++|.+|+.......       .|
T Consensus       174 h~~~~~~l~~~~~~v~~l~~~~~~L~~~--~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~~~~~~~~e~l~~~f  251 (476)
T 1hci_A          174 HEAFESDLAAHQDRVEQIAAIAQELNEL--DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEF  251 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhC--cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999876  56788899999999999999999999999999999877665       78


Q ss_pred             hccCchhhhhhhhhh
Q psy11246         76 QPGIQYPIDTLAFTT   90 (101)
Q Consensus        76 ~~~L~Eli~WL~~~~   90 (101)
                      .....++..||+.+.
T Consensus       252 ~~~a~~~~~Wl~~~~  266 (476)
T 1hci_A          252 AKRAAPFNNWMEGAM  266 (476)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            889999999997653

>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0

Probab=98.51  E-value=1.9e-07  Score=64.95  Aligned_cols=62  Identities=16%  Similarity=0.375  Sum_probs=57.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      .+.++++|.+|++.+..++..|+.++..  ++.++..++.|++.|+.+|..|+.++.+++.+|.
T Consensus        87 H~afe~El~a~~~~l~~v~~~g~~Li~~--~~~~~~~I~~rl~~l~~~W~~L~~~~~~r~~~L~  148 (149)
T 3f31_A           87 HQAFEAEVQANSGAIVKLDETGNLMISE--GHFASETIRTRLMELHRQWELLLEKMREKGIKLL  148 (149)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3589999999999999999999999987  5789999999999999999999999999999984

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1

Probab=98.49  E-value=1.5e-07  Score=66.86  Aligned_cols=64  Identities=23%  Similarity=0.323  Sum_probs=57.6

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF   68 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~   68 (101)
                      .+.++++|.+|++.+.++...|+.|+..  ++.++..++.+++.++.+|..|+..+..++.||+.+
T Consensus       151 h~~~~~el~~~~~~i~~l~~~g~~L~~~--~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a  214 (216)
T 1u5p_A          151 HKRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES  214 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999875  567888999999999999999999999999999865

>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A

Probab=98.49  E-value=4.3e-08  Score=69.45  Aligned_cols=68  Identities=16%  Similarity=0.105  Sum_probs=50.4

Q ss_pred             hhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhhhhhhhh
Q psy11246         16 VYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTT   90 (101)
Q Consensus        16 v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~WL~~~~   90 (101)
                      --...+++|.+|+.      ++..++.|++.++.||+.++.++.++|.+|+++. .+..|..+++|+..||....
T Consensus         9 ~~~~~~~~~~k~~e------~a~~I~~r~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~~Wi~ek~   76 (161)
T 3lbx_A            9 KETVVESSGPKVLE------TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKV   76 (161)
T ss_dssp             -------------C------CSTTGGGHHHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccCCCCcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            33456789999866      5667899999999999999999999999999998 67799999999999998764

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A

Probab=98.43  E-value=2.1e-07  Score=67.07  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy11246          2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYS   70 (101)
Q Consensus         2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~   70 (101)
                      +.+.++.+|.+|++.+.+|+..|..|++.- +++++..++.+++.|+.+|..|+.++.++|.+|+.+.+
T Consensus       148 ~h~~~e~dL~~~~~~v~~l~~~a~~L~~~~-~~~~a~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~  215 (218)
T 3edu_A          148 VHTAFERELHLLGVQVQQFQDVATRLQTAY-AGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTAD  215 (218)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999998875 46789999999999999999999999999999987654

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A

Probab=98.40  E-value=6.8e-07  Score=63.03  Aligned_cols=65  Identities=9%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY   69 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~   69 (101)
                      .+.++++|..|.+.+.++...|+.|++.  ++.++..++.+++.++.+|..|+..+..+|.+|+.+.
T Consensus       148 h~~~~~el~~~~~~i~~l~~~~~~L~~~--~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~~a~  212 (213)
T 1cun_A          148 HEAFETDFTVHKDRVNDVCANGEDLIKK--NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS  212 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4578999999999999999999999987  4668899999999999999999999999999998764

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.31  E-value=1.4e-06  Score=67.06  Aligned_cols=82  Identities=13%  Similarity=0.169  Sum_probs=74.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.|+++|.+|++.+..+...|+.++..  +.+++..++.|++.++..|..|+..+..++.||+++.+ .-.|..+..|+
T Consensus        50 h~~le~El~a~e~~v~~v~~~g~~L~~~--~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~-~~qF~~da~e~  126 (283)
T 3pe0_A           50 YSALMRELELKEKKIKELQNAGDRLLRE--DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAA-YFQFFSDVREA  126 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4589999999999999999999999875  57789999999999999999999999999999997765 46699999999


Q ss_pred             hhhhh
Q psy11246         83 IDTLA   87 (101)
Q Consensus        83 i~WL~   87 (101)
                      ..||.
T Consensus       127 e~Wl~  131 (283)
T 3pe0_A          127 EGQLQ  131 (283)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0

Probab=98.29  E-value=2.1e-07  Score=64.75  Aligned_cols=65  Identities=22%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             cccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhhhhhhhh
Q psy11246         19 SLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTT   90 (101)
Q Consensus        19 sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~WL~~~~   90 (101)
                      |++.+|.+|...      +..++.|++.++.||+.|+..+.++|.+|+++.. +..|..+++|+..||....
T Consensus         2 ~~~~~~~~~~~~------a~~I~~r~~~l~~r~~~L~~~a~~R~~~Le~s~~-l~~F~~d~~el~~Wi~ek~   66 (149)
T 3f31_A            2 SMDPSGVKVLET------AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYR-FQFFQRDAEELEKWIQEKL   66 (149)
T ss_dssp             -----------C------TTHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            455677777553      4468999999999999999999999999999994 8999999999999998864

>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1

Probab=98.29  E-value=9.3e-07  Score=57.58  Aligned_cols=62  Identities=19%  Similarity=0.403  Sum_probs=57.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      .++++.+|.+|.+.+.++...|..++..  +..++..+..|.+.|+.||+.++..+..+|.+|+
T Consensus        45 h~~fe~~~~~~~~~i~~l~~~a~~L~~~--~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr~~L~  106 (107)
T 2spc_A           45 HEDFDKAINGHEQKIAALQTVADQLIAQ--NHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3588999999999999999999999887  6788999999999999999999999999999996

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}

Probab=98.27  E-value=2e-06  Score=62.44  Aligned_cols=79  Identities=14%  Similarity=0.073  Sum_probs=68.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.|+.+|.+|.+.+.+++..+..+     ++++...++.|+..++.+|..|+.-+..+|.+|+    .+-+|.....++
T Consensus        47 H~~le~ei~~~~~~v~~l~~~a~~l-----~~~~~~~i~~rl~~l~~~~~~L~~~a~~R~~~L~----~L~~f~~~~~~~  117 (210)
T 3pdy_A           47 HRGLHQSIEEFRAKIERARSDEGQL-----SPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLE----SLHSFVAAATKE  117 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            3588999999999999999888654     4555566999999999999999999999999998    568899999999


Q ss_pred             hhhhhhhh
Q psy11246         83 IDTLAFTT   90 (101)
Q Consensus        83 i~WL~~~~   90 (101)
                      ..||....
T Consensus       118 ~~Wl~eke  125 (210)
T 3pdy_A          118 LMWLNEKE  125 (210)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.27  E-value=2e-06  Score=72.62  Aligned_cols=86  Identities=10%  Similarity=0.082  Sum_probs=77.0

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh-------hh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV-------TL   75 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~-------~L   75 (101)
                      .+.++++|.+|++.+..+...|+.++..  +..++..++.|++.++.||..|+..+..+|.+|+.+.....       .|
T Consensus       413 h~~f~~el~~~~~~v~~l~~~~~~L~~~--~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f  490 (863)
T 1sjj_A          413 HEAFESDLAAHQDRVEQIAAIAQELNEL--DYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEY  490 (863)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999854  67789999999999999999999999999999999877775       77


Q ss_pred             hccCchhhhhhhhhh
Q psy11246         76 QPGIQYPIDTLAFTT   90 (101)
Q Consensus        76 ~~~L~Eli~WL~~~~   90 (101)
                      .....++..||+.+.
T Consensus       491 ~~~a~~~~~Wl~~~e  505 (863)
T 1sjj_A          491 AKRAAPFNNWMEGAM  505 (863)
T ss_dssp             HHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788899999999765

>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}

Probab=98.20  E-value=1.1e-06  Score=64.15  Aligned_cols=61  Identities=11%  Similarity=0.253  Sum_probs=50.4

Q ss_pred             HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      +.++++|++|++.|.++...|+.|+..  +.+++..++.+++.|+.+|..|+..+..++.+|+
T Consensus       163 ~~l~~el~~~~~~v~~v~~~g~~L~~~--~h~~~~~I~~~~~~l~~~W~~L~~l~~~R~~~L~  223 (224)
T 2iak_A          163 AELMRELEQKEESIKAVQEIAEQLLLE--NHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQ  223 (224)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999885  5678889999999999999999999999999986

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=98.20  E-value=3.2e-06  Score=69.55  Aligned_cols=84  Identities=10%  Similarity=0.069  Sum_probs=76.0

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.|+++|.+|++.+..+...|+.++..  +.+.+..++.|++.|+.+|..|+.....++.||+.... .-.|..+.+|.
T Consensus       135 hq~l~~EL~~~e~~i~~v~~~G~~Li~~--~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~-~~QF~~Da~Ea  211 (450)
T 3r6n_A          135 FSIRMSQLEVKEKELNKLKQESDQLVLN--QHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAA-YFQFFEEAQST  211 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHchHHHHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence            4689999999999999999999999876  67789999999999999999999999999999987654 45899999999


Q ss_pred             hhhhhhh
Q psy11246         83 IDTLAFT   89 (101)
Q Consensus        83 i~WL~~~   89 (101)
                      -.||.+.
T Consensus       212 esWL~ek  218 (450)
T 3r6n_A          212 EAYLKGL  218 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999853

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=98.11  E-value=5.6e-06  Score=58.63  Aligned_cols=64  Identities=13%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF   68 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~   68 (101)
                      .++++.+|.+|.+.+.++...|+.++..  +..++..++.+++.++.||..++.++.+++.+|+.+
T Consensus       149 h~~f~~~l~~~~~~i~~l~~~a~~L~~~--~h~~~~~I~~~~~~l~~rw~~l~~~~~~R~~~L~~~  212 (214)
T 1s35_A          149 FEDFLGSMENNRDKVLSPVDSGNKLVAE--GNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDN  212 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3578899999999999999999999877  567888999999999999999999999999999864

>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}

Probab=97.94  E-value=1e-05  Score=58.87  Aligned_cols=79  Identities=11%  Similarity=0.075  Sum_probs=66.0

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP   82 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El   82 (101)
                      .+.++.+|.+|++-+..++..+..+     .++++..+..+++.++.||..|+..+..+|.+|+    .+..|..++.++
T Consensus        62 h~~~e~ei~~~~~~v~~~~~~~~~~-----~~~~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le----~l~~F~~~~~~~  132 (224)
T 2iak_A           62 HKNVHRAIEEFESSLKEAKISEIQM-----TAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLD----TLHNFVTRATNE  132 (224)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGC-----CTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            3578888888887777776554333     2256788999999999999999999999999998    888999999999


Q ss_pred             hhhhhhhh
Q psy11246         83 IDTLAFTT   90 (101)
Q Consensus        83 i~WL~~~~   90 (101)
                      ..||...-
T Consensus       133 ~~Wi~eke  140 (224)
T 2iak_A          133 LIWLNEKE  140 (224)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}

Probab=97.80  E-value=3.8e-05  Score=55.66  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=57.1

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLI   67 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~   67 (101)
                      +..++.++++|++.+.+++..|+.|+..  +.+++..++.+.+.||.+|+.|+.-+.-+..||+.
T Consensus       147 ~~~f~~el~~~~~~v~~l~~~~~~Ll~~--~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~hLk~  209 (210)
T 3pdy_A          147 YSALMRELELKEKKIKELQNAGDRLLRE--DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE  209 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4578999999999999999999999887  56688899999999999999999999999999865

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=97.75  E-value=1.7e-05  Score=62.26  Aligned_cols=87  Identities=8%  Similarity=0.060  Sum_probs=70.0

Q ss_pred             HHHHHHHhhhhhhhhcc---cchhhhhhcccCCc--hhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhh-------
Q psy11246          4 KDLQAEIESHKDVYSSL---NTSGKRLLGSLTSQ--DDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSL-------   71 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~sL---n~tG~~I~~~L~s~--~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~-------   71 (101)
                      +.++++|+.+...+.++   ...|..++.....+  .+.+.++.+++.++.||..|+..+..++.+|+..-..       
T Consensus       289 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L  368 (476)
T 1hci_A          289 EQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERL  368 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            46777788887766666   56778887765211  2566788999999999999999999999999988775       


Q ss_pred             HhhhhccCchhhhhhhhhh
Q psy11246         72 SVTLQPGIQYPIDTLAFTT   90 (101)
Q Consensus        72 ~~~L~~~L~Eli~WL~~~~   90 (101)
                      ...|.....++..||.++.
T Consensus       369 ~~~F~~~a~~~~~Wl~e~e  387 (476)
T 1hci_A          369 RRQFAAQANAIGPWIQNKM  387 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3689999999999998874

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=97.45  E-value=0.00012  Score=52.52  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=48.7

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR   62 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR   62 (101)
                      .++++.++.++.+.+.+|...|..++..  +..++..++.+++.++.||..|+..+.++|
T Consensus       161 h~~f~~~l~~~~~~v~~l~~~~~~L~~~--~h~~~~~I~~~~~~l~~rW~~l~~~l~~rr  218 (218)
T 3fb2_A          161 HEDFDKAINVQEEKIAALQAFADQLIAA--GHYAKGDISSRRNEVLDRWRRLKAQMIEKR  218 (218)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4578899999999999999999999976  466788999999999999999999988876

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=97.36  E-value=4.3e-05  Score=64.55  Aligned_cols=87  Identities=7%  Similarity=0.008  Sum_probs=67.7

Q ss_pred             HHHHHHHhhhhhhhhcccchhhhhhcc---cC--CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh-------hh
Q psy11246          4 KDLQAEIESHKDVYSSLNTSGKRLLGS---LT--SQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY-------SL   71 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~---L~--s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~-------~~   71 (101)
                      ++++++|.+|++-+.+++..|+.+...   ..  +..+.+..+.+++.++.||.+|+..+..+|.+|+.+.       ..
T Consensus       528 ~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l  607 (863)
T 1sjj_A          528 EQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERL  607 (863)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            467778888877778888888766542   10  1223445567899999999999999999999999876       55


Q ss_pred             HhhhhccCchhhhhhhhhh
Q psy11246         72 SVTLQPGIQYPIDTLAFTT   90 (101)
Q Consensus        72 ~~~L~~~L~Eli~WL~~~~   90 (101)
                      +..|....+++..||....
T Consensus       608 ~~~F~~~a~~~~~Wi~e~e  626 (863)
T 1sjj_A          608 RKQFGAQANVIGPWIQTKM  626 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7888899999999998764

>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=96.41  E-value=0.0019  Score=47.16  Aligned_cols=66  Identities=9%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             HHHHHHhhhh---hhhhcccchhhhhhcccCCc--hhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy11246          5 DLQAEIESHK---DVYSSLNTSGKRLLGSLTSQ--DDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYS   70 (101)
Q Consensus         5 eLqaeI~sh~---~v~~sLn~tG~~I~~~L~s~--~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~   70 (101)
                      .+++.+..+.   ..+..++..+..+++...++  .+.+..+.+++.++.||..|+..+..++.+|+.+-.
T Consensus       173 ~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~  243 (250)
T 1quu_A          173 QFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA  243 (250)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4553334433   33444455557777665211  145567899999999999999999999999987643

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=93.03  E-value=0.056  Score=48.34  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             HHHHHHHhhhhhhhh-cccchhhhhhcccCCchhHHHHHHhHHHHH-HHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246          4 KDLQAEIESHKDVYS-SLNTSGKRLLGSLTSQDDAVMLQRRLDEMN-QRWHHLKNRSLAIRMQSLIFYSLS   72 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~-sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN-~RW~~l~~ks~~iR~RLe~~~~~~   72 (101)
                      +.++++|.+|++-+. .+...|+.|++.  ...++..+..|.+.++ ++|..|+...+.+|.+|+.+-+..
T Consensus       929 ea~e~dl~a~e~ri~~~l~~~a~eL~~~--~y~~~~~I~~R~~~L~~~~W~~L~~la~~Rk~~Le~~lq~~  997 (1010)
T 1g8x_A          929 EAFDGECQSLEGQSNSDLLSILAQLTEL--NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL  997 (1010)
T ss_dssp             HHHTTTTTHHHHTHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHTTHHHHHHHHTHHHHTTTTTTTSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888887766 788888887655  6789999999999996 899999999999999998765543

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=92.78  E-value=0.02  Score=51.00  Aligned_cols=67  Identities=16%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             HHHHHHHhhhhhhhh-cccchhhhhhcccCCchhHHHHHHhHHHH-HHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246          4 KDLQAEIESHKDVYS-SLNTSGKRLLGSLTSQDDAVMLQRRLDEM-NQRWHHLKNRSLAIRMQSLIFYSLS   72 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~-sLn~tG~~I~~~L~s~~Da~~Lq~kLd~m-N~RW~~l~~ks~~iR~RLe~~~~~~   72 (101)
                      ..++++|.+|++-+. .+...|+.++..  +..++..+..|.+.+ .+||..|+..+..+|.+|+.+-+..
T Consensus       921 ea~e~dl~a~e~ri~~~l~~~a~~L~~~--~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~~~  989 (995)
T 2ycu_A          921 EAFDGECQSLEGQSNSDLLSILAQLTEL--NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL  989 (995)
T ss_dssp             HHHHHHHHHTTTCSCSSHHHHHHHHTTT--HHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888887765 777888777554  678899999999999 5999999999999999998765543

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=91.99  E-value=0.22  Score=40.81  Aligned_cols=43  Identities=7%  Similarity=-0.017  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhhhhhhh
Q psy11246         43 RLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFT   89 (101)
Q Consensus        43 kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~WL~~~   89 (101)
                      ++..+..||.+|+.-+..+|.+|+    .+-+|..+..+...||.+.
T Consensus        70 ~~~~L~~~y~~L~~~a~~Rr~~Le----~L~qFl~d~~ee~~Wi~EK  112 (450)
T 3r6n_A           70 AIYQLEEEYENLLKASFERMDHLR----QLQNIIQATSREIMWINDC  112 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999997    4778999999999999875

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A

Probab=91.59  E-value=0.38  Score=36.24  Aligned_cols=58  Identities=9%  Similarity=0.112  Sum_probs=50.1

Q ss_pred             HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy11246          4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM   63 (101)
Q Consensus         4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~   63 (101)
                      ..++..|.+|+.-+..++.....+. .. ..+++..+..|...++.||..++.++..++.
T Consensus       168 e~ie~dL~~~e~~i~~l~~~a~~L~-~~-~y~~a~~i~~r~~~l~~~w~~L~~~~~~r~~  225 (235)
T 2odv_A          168 GEVERDLDKADSMIRLLFNDVQTLK-DG-RHPQGEQMYRRVYRLHKRLVAIRTEYNLRLK  225 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999988877764 44 7999999999999999999999999977764

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=87.56  E-value=1.3  Score=26.65  Aligned_cols=36  Identities=11%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246         32 TSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLI   67 (101)
Q Consensus        32 ~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~   67 (101)
                      +++.|...|+..+++|-.+...++++..+.++||+.
T Consensus        16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1cuna2	104	a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken	4e-05
d1u5pa1	110	a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicke	5e-05
d1u5pa2	101	a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicke	7e-05
d2spca_	107	a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp.	1e-04
d1quua1	124	a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapie	1e-04

>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 104

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.9 bits (85), Expect = 4e-05
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 4  KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
          +  + +   HKD  + +  +G+ L+    +      +  ++  +  +   L+  + A R 
Sbjct: 40 EAFETDFTVHKDRVNDVCANGEDLIKK--NNHHVENITAKMKGLKGKVSDLEKAA-AQRK 96

Query: 64 QSL 66
            L
Sbjct: 97 AKL 99

>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 110

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.9 bits (85), Expect = 5e-05
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + L+A+I +H+D    LN+    L+   +S  D   ++ + + +N R+  +K+ + A R 
Sbjct: 45  QLLEADISAHEDRLKDLNSQADSLMT--SSAFDTSQVKDKRETINGRFQRIKSMA-AARR 101

Query: 64  QSL 66
             L
Sbjct: 102 AKL 104

>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 101

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.5 bits (84), Expect = 7e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 5   DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQ 64
            L+AE+ +H+     +  +GK+L     +      +Q+RL +    W  LK  + A R Q
Sbjct: 42  RLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLA-AARGQ 98

Query: 65  SL 66
            L
Sbjct: 99  RL 100

>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]} Length = 107

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Drosophila sp. [TaxId: 7242]

 Score = 36.1 bits (83), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           +D    I  H+   ++L T   +L+    +   + ++  +  ++ +RW HLK      + 
Sbjct: 46  EDFDKAINGHEQKIAALQTVADQLIAQ--NHYASNLVDEKRKQVLERWRHLKEGL-IEKR 102

Query: 64  QSL 66
             L
Sbjct: 103 SRL 105

>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           +  ++++ +H+D    +    + L        DAV +  R  ++  +W  L   +   R 
Sbjct: 58  EAFESDLAAHQDRVEQIAAIAQELNEL--DYHDAVNVNDRCQKICDQWDRLGTLT-QKRR 114

Query: 64  QSL 66
           ++L
Sbjct: 115 EAL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1s35a1	106	Spectrin beta chain {Human (Homo sapiens) [TaxId:	98.86
d1quua1	124	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1cuna2	104	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	98.84
d1u5pa2	101	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	98.72
d2spca_	107	Spectrin alpha chain {Drosophila sp. [TaxId: 7242]	98.7
d1owaa_	156	Spectrin alpha chain {Human (Homo sapiens) [TaxId:	98.65
d1u5pa1	110	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	98.65
d1s35a2	105	Spectrin beta chain {Human (Homo sapiens) [TaxId:	98.59
d1hcia4	114	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1owaa_	156	Spectrin alpha chain {Human (Homo sapiens) [TaxId:	98.13
d1quua2	124	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	97.85

>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.8e-09  Score=66.58  Aligned_cols=65  Identities=18%  Similarity=0.401  Sum_probs=59.9

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF   68 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~   68 (101)
                      .++++.+|++|++.|..+...|+.++... +++++..++.+|+.|+.+|..|+..+.+++.+|+.+
T Consensus        41 h~~l~~ei~~~~~~~~~~~~~g~~L~~~~-~~~~~~~I~~~l~~L~~~w~~L~~~~~~R~~~Le~a  105 (106)
T d1s35a1          41 HAGIKDEIDGHQDSYQRVKESGEKVIQGQ-TDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQC  105 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999886 667889999999999999999999999999999753

>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.5e-09  Score=68.76  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=61.6

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSL   71 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~   71 (101)
                      .++++.+|.+|++.+..++..|+.++..-  ++++..++.+++.||.||+.|+..+.++|.+|+.+.+.
T Consensus        57 h~~~~~~i~~~~~~v~~l~~~~~~L~~~~--~~~~~~i~~~~~~l~~rW~~L~~~~~~R~~~L~~a~~l  123 (124)
T d1quua1          57 HEAFESDLAAHQDRVEQIAAIAQELNELD--YHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKL  123 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999874  67899999999999999999999999999999987654

>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.84  E-value=3.6e-09  Score=66.98  Aligned_cols=65  Identities=9%  Similarity=0.189  Sum_probs=60.4

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY   69 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~   69 (101)
                      .++++.+|.+|++.|..+..+|+.++..  +++++..++.+++.++.+|..|+..+..+|.+|+.+.
T Consensus        39 h~~~~~ei~~~~~~~~~l~~~g~~L~~~--~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le~s~  103 (104)
T d1cuna2          39 HEAFETDFTVHKDRVNDVCANGEDLIKK--NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999887  4678999999999999999999999999999998753

>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.72  E-value=7.8e-09  Score=64.60  Aligned_cols=62  Identities=24%  Similarity=0.363  Sum_probs=57.6

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      .+.++.+|.+|++.+.++...|+.++..  +++++..++.+++.|+.||..|+..+..+|.+|+
T Consensus        40 h~~~~~~i~~~~~~~~~l~~~~~~l~~~--~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le  101 (101)
T d1u5pa2          40 HKRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE  101 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            5689999999999999999999999976  4678999999999999999999999999999985

>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Drosophila sp. [TaxId: 7242]

Probab=98.70  E-value=9.3e-09  Score=64.68  Aligned_cols=62  Identities=19%  Similarity=0.403  Sum_probs=58.2

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      .++++.+|.+|.+.+.++...|..++..  +++++..++.|++.++.+|+.|+..+..+|.+|+
T Consensus        45 h~~~~~ei~~~~~~~~~l~~~~~~L~~~--~~~~~~~I~~~~~~l~~~w~~L~~~~~~r~~~Le  106 (107)
T d2spca_          45 HEDFDKAINGHEQKIAALQTVADQLIAQ--NHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHcC
Confidence            4689999999999999999999999986  5788999999999999999999999999999996

>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.2e-08  Score=66.72  Aligned_cols=62  Identities=18%  Similarity=0.298  Sum_probs=58.0

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL   66 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe   66 (101)
                      .+.++.+|.+|++.|..++..|..|+..  +++++..++.+++.||.||..|++.+.+++.+|.
T Consensus        94 h~~l~~ei~~~~~~~~~l~~~g~~L~~~--~~~~~~~i~~~l~~l~~~W~~L~~~~~~R~~~L~  155 (156)
T d1owaa_          94 HQSLEAEVQTKSRLMSELEKTREERFTM--GHSAHEETKAHIEELRHLWDLLLELTLEKGDQLL  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4689999999999999999999999876  6889999999999999999999999999999984

>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.65  E-value=2.6e-08  Score=63.15  Aligned_cols=65  Identities=25%  Similarity=0.325  Sum_probs=59.8

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY   69 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~   69 (101)
                      .+.++.+|.+|.+.+..+...|..++..  ++.++..++.+++.|+.||..|+..+.+++.+|+.+-
T Consensus        44 h~~~~~ei~~~~~~i~~l~~~~~~L~~~--~~~~~~~i~~~~~~l~~~w~~l~~~~~~R~~~L~ea~  108 (110)
T d1u5pa1          44 HQLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5689999999999999999999999875  5778889999999999999999999999999998764

>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.1e-08  Score=61.61  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLI   67 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~   67 (101)
                      .+.|+.+|.+|++.+..++..|..|+..  +++++..++.+++.++.||..|+..+..+|.||+.
T Consensus        42 h~~l~~~l~~~~~~v~~l~~~a~~L~~~--~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~~L~d  104 (105)
T d1s35a2          42 FEDFLGSMENNRDKVLSPVDSGNKLVAE--GNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRD  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            4689999999999999999999999986  67789999999999999999999999999999974

>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6e-08  Score=62.66  Aligned_cols=63  Identities=11%  Similarity=0.060  Sum_probs=58.0

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLI   67 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~   67 (101)
                      .+.++++|.+|++.+..+...|+.|+..  .+.+...++.++++|+.+|..|+..+..+++.|+.
T Consensus        46 h~~~e~el~~~~~~i~~l~~~g~~L~~~--~~~~~~~i~~~~~~L~~~W~~L~~~~~~R~~~Le~  108 (114)
T d1hcia4          46 LKQYEHNIINYKNNIDKLEGDHQLIQEA--LVFDNKHTNYTMEHIRVGWELLLTTIARTINEVET  108 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999876  46788899999999999999999999999999965

>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.4e-07  Score=60.71  Aligned_cols=68  Identities=16%  Similarity=0.102  Sum_probs=58.2

Q ss_pred             hhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhhhhhhh
Q psy11246         15 DVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFT   89 (101)
Q Consensus        15 ~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~WL~~~   89 (101)
                      |-+..++++|..++.      .+..++.+++.++.||+.|+..+.+++.+|+..- .+..|...+.++..||...
T Consensus         5 p~~~~~~~~g~~l~e------~~~~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~-~~~~F~~~~~~l~~Wl~e~   72 (156)
T d1owaa_           5 PKETVVESSGPKVLE------TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEK   72 (156)
T ss_dssp             CCCCCTTSSSCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            445678889988853      3556999999999999999999999999999765 5789999999999999764

>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.7e-06  Score=54.92  Aligned_cols=67  Identities=9%  Similarity=0.098  Sum_probs=55.8

Q ss_pred             hHHHHHHHhhhhhhhhcccchhhhhhcccC-----CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy11246          3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLT-----SQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY   69 (101)
Q Consensus         3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~-----s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~   69 (101)
                      .+.++.+|.+|++.+.++...|..|+..-.     .+++...++.++++++.+|..|+..+.+++.+|+.+-
T Consensus        47 h~~fe~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~R~~~L~e~l  118 (124)
T d1quua2          47 HEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEEL  118 (124)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999876541     1233445678899999999999999999999998654