Psyllid ID: psy11283

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MNFVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA
cccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEcccEEEEEEcccHHHHcccccccccccccHHHHcccccccEEEcccHHHHHHHHHHHHcccccccccccccEEccccccccccccccccccEEEEEEEccEEEEEEcccccccc
cccccccEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHccccccEEEccccccccccccccccccHHHHEEEEEEEEccEEEEEEEEccccHHHcEcHHHHHHHHHHHHHHHHHcccEEEEEEEccEcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcHHHHHHHHccEEEEEccccEEEcccHHHHHHHHcccccHHHHHEHHHHHHccccccEEEccHHHHHHHHHHHHHcccccccccccHHHHcHHHcEEEEcccccccEEEEEEEEccEEEEEEEEcccccc
mnfvgrmyysyndvdhLMRVRGQIDSMRAIALqgggtksiqaqhnkgkLTARERVELLcdpgtfveydmfmehrcvdfnmsekkipgdsvvtgrgsvngrtvFIFSqdftvfggslsSVHAEKICKIMDQAMltgapivglndsggaRIQEGVESLAAYSSVFQRNIlasgvvpqislilgpcaggavyspaitdfTFMVEHssylfitgpdviksvtnedisqeelggakthtsvsgvahnafsndIDAIQNVRHLlgflpmnntqkppirrcydsreffeiQPKYAKNIIVGFARinghsvgivanqpkvaa
MNFVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGggtksiqaqhnkgkltareRVELLCDPGTFVEYDMFMEHRCVDFnmsekkipgdsvVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGflpmnntqkppIRRCYDSREFFEIQPKYAKNIIVGFARINGHsvgivanqpkvaa
MNFVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA
**FVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGGG***********KLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTN***************SVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVA*******
**********************************************GKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV**
MNFVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGG*************LTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA
*NFVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVA*
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MNFVGRMYYSYNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDSREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
P05166 539 Propionyl-CoA carboxylase yes N/A 0.939 0.547 0.632 1e-122
P79384 539 Propionyl-CoA carboxylase yes N/A 0.939 0.547 0.629 1e-121
Q2TBR0 539 Propionyl-CoA carboxylase yes N/A 0.939 0.547 0.629 1e-121
Q99MN9 541 Propionyl-CoA carboxylase yes N/A 0.939 0.545 0.629 1e-121
P07633 541 Propionyl-CoA carboxylase yes N/A 0.939 0.545 0.623 1e-120
P53003 546 Propionyl-CoA carboxylase yes N/A 0.891 0.512 0.515 8e-88
P96885 548 Probable propionyl-CoA ca yes N/A 0.914 0.523 0.498 4e-83
P54541 507 Putative propionyl-CoA ca yes N/A 0.917 0.568 0.487 2e-82
P53002 549 Probable propionyl-CoA ca yes N/A 0.891 0.510 0.485 2e-79
Q8GBW6 611 Methylmalonyl-CoA carboxy N/A N/A 0.920 0.472 0.454 7e-75
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=PCCB PE=1 SV=3 Back     alignment and function desciption
 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/329 (63%), Positives = 250/329 (75%), Gaps = 34/329 (10%)

Query: 20  VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFN 79
           V  +I++ R  AL GGG + I AQH +GKLTARER+ LL DPG+FVE DMF+EHRC DF 
Sbjct: 35  VNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFG 94

Query: 80  MS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAP 137
           M+  + K PGDSVVTGRG +NGR V++FSQDFTVFGGSLS  HA+KICKIMDQA+  GAP
Sbjct: 95  MAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAP 154

Query: 138 IVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFT 197
           ++GLNDSGGARIQEGVESLA Y+ +F RN+ ASGV+PQISLI+GPCAGGAVYSPA+TDFT
Sbjct: 155 VIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFT 214

Query: 198 FMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHL 257
           FMV+ +SYLFITGPDV+KSVTNED++QEELGGAKTHT++SGVAH AF ND+DA+ N+R  
Sbjct: 215 FMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDF 274

Query: 258 LGFLPMNNTQKPPIRRCY--------------------------------DSREFFEIQP 285
             +LP+++    P+R C+                                D REFFEI P
Sbjct: 275 FNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMP 334

Query: 286 KYAKNIIVGFARINGHSVGIVANQPKVAA 314
            YAKNIIVGFAR+NG +VGIV NQPKVA+
Sbjct: 335 NYAKNIIVGFARMNGRTVGIVGNQPKVAS 363

Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 3
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa GN=PCCB PE=2 SV=1 Back     alignment and function description
>sp|Q2TBR0|PCCB_BOVIN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus GN=PCCB PE=2 SV=1 Back     alignment and function description
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Pccb PE=1 SV=2 Back     alignment and function description
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus GN=Pccb PE=2 SV=1 Back     alignment and function description
>sp|P53003|PCCB_SACEN Propionyl-CoA carboxylase beta chain OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=pccB PE=3 SV=2 Back     alignment and function description
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium tuberculosis GN=accD5 PE=1 SV=1 Back     alignment and function description
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis (strain 168) GN=yqjD PE=3 SV=2 Back     alignment and function description
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium leprae (strain TN) GN=accD5 PE=3 SV=1 Back     alignment and function description
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit OS=Propionibacterium freudenreichii subsp. shermanii PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
346464557 440 hypothetical protein [Amblyomma maculatu 0.987 0.704 0.628 1e-125
443728924 539 hypothetical protein CAPTEDRAFT_170203 [ 0.987 0.575 0.628 1e-124
432936660 560 PREDICTED: propionyl-CoA carboxylase bet 0.964 0.541 0.644 1e-123
348510789 560 PREDICTED: propionyl-CoA carboxylase bet 0.964 0.541 0.639 1e-123
395528703 542 PREDICTED: propionyl-CoA carboxylase bet 0.939 0.544 0.647 1e-122
427783013 542 Putative 3-methylcrotonyl-coa carboxylas 0.993 0.575 0.610 1e-122
405978690 544 Propionyl-CoA carboxylase beta chain, mi 0.952 0.549 0.634 1e-122
147904714 541 propionyl CoA carboxylase, beta polypept 0.955 0.554 0.635 1e-122
334329603 761 PREDICTED: propionyl-CoA carboxylase bet 0.939 0.387 0.638 1e-121
38511450 541 MGC68650 protein [Xenopus laevis] 0.955 0.554 0.635 1e-121
>gi|346464557|gb|AEO32123.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 256/342 (74%), Gaps = 32/342 (9%)

Query: 5   GRMYYSYNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTF 64
           G++   Y  V + +RV+ +ID  R  AL  GG K I  QH KGKL+ARER+ +L DPGTF
Sbjct: 26  GQLSLRYCSVANTLRVKKEIDEKRKAALLAGGEKRIAKQHEKGKLSARERISILLDPGTF 85

Query: 65  VEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKI 124
           VEYDMFMEH C DF  +E+K  GDSVVTG G ++GR VF+FSQDFTVFGGSLSSVHA+KI
Sbjct: 86  VEYDMFMEHTCSDFWNAEEKYSGDSVVTGHGEIHGRQVFVFSQDFTVFGGSLSSVHAKKI 145

Query: 125 CKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCA 184
           CKIMDQAML GAP++GLNDSGGARIQEGVESLA Y+ +FQRN+L+SGVVPQIS+I+GPCA
Sbjct: 146 CKIMDQAMLVGAPVIGLNDSGGARIQEGVESLAGYADIFQRNVLSSGVVPQISVIMGPCA 205

Query: 185 GGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAF 244
           GGAVYSPAITDF FMV+ +SYLFITGPDV+K+VTNED++QEELGGAKTHT  SGVAH AF
Sbjct: 206 GGAVYSPAITDFIFMVKDTSYLFITGPDVVKAVTNEDVTQEELGGAKTHTVTSGVAHKAF 265

Query: 245 SNDIDAIQNVRHLLGFLPMNNTQKPPIRRCYDS--------------------------- 277
            ND+DA+  +R    F+PMNN   PP+R+C+D+                           
Sbjct: 266 ENDVDAMMELRRFYDFIPMNNKSGPPVRKCFDAWDRLVPSLDSVVPLETTAAYNMLDVIL 325

Query: 278 -----REFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA 314
                R+FFEI P YAKN+IVGFAR+NG +VGIV N PK AA
Sbjct: 326 DVVDDRDFFEIMPTYAKNLIVGFARMNGQTVGIVGNNPKSAA 367

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|443728924|gb|ELU15042.1| hypothetical protein CAPTEDRAFT_170203 [Capitella teleta] Back     alignment and taxonomy information
>gi|432936660|ref|XP_004082216.1| PREDICTED: propionyl-CoA carboxylase beta chain, mitochondrial-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|348510789|ref|XP_003442927.1| PREDICTED: propionyl-CoA carboxylase beta chain, mitochondrial-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|395528703|ref|XP_003766466.1| PREDICTED: propionyl-CoA carboxylase beta chain, mitochondrial [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|427783013|gb|JAA56958.1| Putative 3-methylcrotonyl-coa carboxylase non-biotin [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|405978690|gb|EKC43060.1| Propionyl-CoA carboxylase beta chain, mitochondrial [Crassostrea gigas] Back     alignment and taxonomy information
>gi|147904714|ref|NP_001083656.1| propionyl CoA carboxylase, beta polypeptide [Xenopus laevis] gi|62740260|gb|AAH94074.1| MGC68650 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|334329603|ref|XP_001364997.2| PREDICTED: propionyl-CoA carboxylase beta chain, mitochondrial-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|38511450|gb|AAH61665.1| MGC68650 protein [Xenopus laevis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
ZFIN|ZDB-GENE-040426-2467 558 pccb "propionyl Coenzyme A car 0.834 0.469 0.704 2e-115
UNIPROTKB|F1PTU4 554 PCCB "Uncharacterized protein" 0.818 0.463 0.702 1.1e-114
UNIPROTKB|C9JQS9 559 PCCB "Propionyl-CoA carboxylas 0.818 0.459 0.687 9.9e-114
UNIPROTKB|E9PDR0 550 PCCB "Propionyl-CoA carboxylas 0.818 0.467 0.687 9.9e-114
UNIPROTKB|F8WBI9405 PCCB "Propionyl-CoA carboxylas 0.818 0.634 0.687 9.9e-114
UNIPROTKB|P05166 539 PCCB "Propionyl-CoA carboxylas 0.818 0.476 0.687 9.9e-114
UNIPROTKB|P79384 539 PCCB "Propionyl-CoA carboxylas 0.818 0.476 0.687 1.3e-113
MGI|MGI:1914154 541 Pccb "propionyl Coenzyme A car 0.818 0.475 0.691 2.1e-113
UNIPROTKB|Q2TBR0 539 PCCB "Propionyl-CoA carboxylas 0.818 0.476 0.683 2.1e-113
UNIPROTKB|E7EX59 570 PCCB "Propionyl-CoA carboxylas 0.541 0.298 0.723 9.3e-113
ZFIN|ZDB-GENE-040426-2467 pccb "propionyl Coenzyme A carboxylase, beta polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 996 (355.7 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
 Identities = 186/264 (70%), Positives = 219/264 (82%)

Query:    18 MRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVD 77
             M V+ +I+  R  AL GGG   I AQH +GKLTARERVELL D  +FVEYDMF+EHRC D
Sbjct:    49 MSVQERIEQKRQAALTGGGQLRIAAQHKRGKLTARERVELLLDADSFVEYDMFVEHRCSD 108

Query:    78 FNMS--EKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTG 135
             F M   + K PGDSVVTG+G +NGR V++FSQDFTVFGGSLS  HA+KICKIMDQAML G
Sbjct:   109 FGMEADQNKYPGDSVVTGQGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMLVG 168

Query:   136 APIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITD 195
             AP++GLNDSGGARIQEGVESLA Y+ +F RN++ASGVVPQISLI+GPCAGGAVYSPA+TD
Sbjct:   169 APVIGLNDSGGARIQEGVESLAGYADIFLRNVMASGVVPQISLIMGPCAGGAVYSPALTD 228

Query:   196 FTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVR 255
             FTFMV+ +SYLFITGPDV+KSVTNED++QEELGGAKTHT+VSGVAH AF NDIDA+ N+R
Sbjct:   229 FTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTAVSGVAHRAFENDIDALLNLR 288

Query:   256 HLLGFLPMNNTQKPPIRRCYDSRE 279
                 FLP++N    P+  C+D R+
Sbjct:   289 DFFNFLPLSNKDSAPVVECHDPRD 312
GO:0016874 "ligase activity" evidence=IEA
UNIPROTKB|F1PTU4 PCCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C9JQS9 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PDR0 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8WBI9 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P05166 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P79384 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914154 Pccb "propionyl Coenzyme A carboxylase, beta polypeptide" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBR0 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E7EX59 PCCB "Propionyl-CoA carboxylase beta chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53003PCCB_SACEN6, ., 4, ., 1, ., 30.51560.89170.5128yesN/A
P05166PCCB_HUMAN6, ., 4, ., 1, ., 30.63220.93940.5473yesN/A
Q2TBR0PCCB_BOVIN6, ., 4, ., 1, ., 30.62910.93940.5473yesN/A
B8FTK7ACCD_DESHD6, ., 4, ., 1, ., 20.30560.64330.6644yesN/A
Q99MN9PCCB_MOUSE6, ., 4, ., 1, ., 30.62910.93940.5452yesN/A
P79384PCCB_PIG6, ., 4, ., 1, ., 30.62910.93940.5473yesN/A
P07633PCCB_RAT6, ., 4, ., 1, ., 30.62310.93940.5452yesN/A
Q24XY8ACCD_DESHY6, ., 4, ., 1, ., 20.30560.64330.6644yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.4.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
TIGR01117 512 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase a 1e-142
COG4799 526 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyl 1e-142
pfam01039 487 pfam01039, Carboxyl_trans, Carboxyl transferase do 1e-133
PLN02820 569 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxyla 5e-42
TIGR00515285 TIGR00515, accD, acetyl-CoA carboxylase, carboxyl 4e-22
COG0777294 COG0777, AccD, Acetyl-CoA carboxylase beta subunit 6e-22
PRK05654292 PRK05654, PRK05654, acetyl-CoA carboxylase subunit 3e-20
TIGR03133274 TIGR03133, malonate_beta, malonate decarboxylase, 8e-17
PRK07189301 PRK07189, PRK07189, malonate decarboxylase subunit 1e-16
CHL00174296 CHL00174, accD, acetyl-CoA carboxylase beta subuni 2e-12
PRK12319256 PRK12319, PRK12319, acetyl-CoA carboxylase subunit 0.003
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit Back     alignment and domain information 
 Score =  410 bits (1056), Expect = e-142
 Identities = 175/315 (55%), Positives = 219/315 (69%), Gaps = 32/315 (10%)

Query: 32  LQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVV 91
            QGGG K I+ QH +GK+TARER+ LL DPG+FVE D F++HRC +F M +K++P + VV
Sbjct: 14  KQGGGEKRIEKQHAQGKMTARERLALLFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVV 73

Query: 92  TGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQE 151
           TG G+++GR V+ F+QDFTV GGSL  +HA KI KIMD AM  GAP+VGLNDSGGARIQE
Sbjct: 74  TGYGTIDGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQE 133

Query: 152 GVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGP 211
            V++L  Y  +F RN +ASGVVPQIS I+GPCAGGAVYSPA+TDF +MV+++S +FITGP
Sbjct: 134 AVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGP 193

Query: 212 DVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLPMNNTQKPPI 271
            VIK+VT E+++ E+LGGA  H SVSGVAH    +D D I  +R LL FLP NN +K P+
Sbjct: 194 QVIKTVTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPSNNMEKAPL 253

Query: 272 RRC----------------------YDSR----------EFFEIQPKYAKNIIVGFARIN 299
            +                       YD R          ++ E+QP YA NII  FARIN
Sbjct: 254 VKTGDDPTRETPELYDLLPDNPNKPYDMRDVITAIVDNGDYLEVQPYYAPNIITCFARIN 313

Query: 300 GHSVGIVANQPKVAA 314
           G SVGI+ANQPKV A
Sbjct: 314 GQSVGIIANQPKVMA 328

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds]. Length = 512
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain Back     alignment and domain information
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain Back     alignment and domain information
>gnl|CDD|129606 TIGR00515, accD, acetyl-CoA carboxylase, carboxyl transferase, beta subunit Back     alignment and domain information
>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|235547 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|188285 TIGR03133, malonate_beta, malonate decarboxylase, beta subunit Back     alignment and domain information
>gnl|CDD|235954 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|214384 CHL00174, accD, acetyl-CoA carboxylase beta subunit; Reviewed Back     alignment and domain information
>gnl|CDD|183435 PRK12319, PRK12319, acetyl-CoA carboxylase subunit alpha; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
COG4799 526 Acetyl-CoA carboxylase, carboxyltransferase compon 100.0
TIGR01117 512 mmdA methylmalonyl-CoA decarboxylase alpha subunit 100.0
PLN02820 569 3-methylcrotonyl-CoA carboxylase, beta chain 100.0
PF01039 493 Carboxyl_trans: Carboxyl transferase domain; Inter 100.0
KOG0540|consensus 536 100.0
PRK07189301 malonate decarboxylase subunit beta; Reviewed 100.0
TIGR03133274 malonate_beta malonate decarboxylase, beta subunit 100.0
CHL00174296 accD acetyl-CoA carboxylase beta subunit; Reviewed 100.0
PRK05654292 acetyl-CoA carboxylase subunit beta; Validated 100.0
TIGR00515285 accD acetyl-CoA carboxylase, carboxyl transferase, 100.0
COG0777294 AccD Acetyl-CoA carboxylase beta subunit [Lipid me 100.0
PRK12319256 acetyl-CoA carboxylase subunit alpha; Provisional 100.0
KOG0368|consensus 2196 99.98
CHL00198322 accA acetyl-CoA carboxylase carboxyltransferase al 99.97
TIGR00513316 accA acetyl-CoA carboxylase, carboxyl transferase, 99.97
PRK05724319 acetyl-CoA carboxylase carboxyltransferase subunit 99.97
PLN03229 762 acetyl-coenzyme A carboxylase carboxyl transferase 99.97
TIGR01117512 mmdA methylmalonyl-CoA decarboxylase alpha subunit 99.96
PLN03230431 acetyl-coenzyme A carboxylase carboxyl transferase 99.96
COG4799526 Acetyl-CoA carboxylase, carboxyltransferase compon 99.95
PLN02820569 3-methylcrotonyl-CoA carboxylase, beta chain 99.94
KOG0540|consensus536 99.94
PF01039493 Carboxyl_trans: Carboxyl transferase domain; Inter 99.92
TIGR03134238 malonate_gamma malonate decarboxylase, gamma subun 99.89
COG0825317 AccA Acetyl-CoA carboxylase alpha subunit [Lipid m 99.86
PF03255145 ACCA: Acetyl co-enzyme A carboxylase carboxyltrans 98.83
PF06833234 MdcE: Malonate decarboxylase gamma subunit (MdcE); 98.37
cd07020187 Clp_protease_NfeD_1 Nodulation formation efficienc 98.11
cd06558195 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy 97.93
PRK07854243 enoyl-CoA hydratase; Provisional 97.93
TIGR00513 316 accA acetyl-CoA carboxylase, carboxyl transferase, 97.92
PRK05724 319 acetyl-CoA carboxylase carboxyltransferase subunit 97.89
PRK07112255 polyketide biosynthesis enoyl-CoA hydratase; Valid 97.86
PRK08150255 enoyl-CoA hydratase; Provisional 97.83
PLN03230 431 acetyl-coenzyme A carboxylase carboxyl transferase 97.78
PRK11423261 methylmalonyl-CoA decarboxylase; Provisional 97.78
PRK09674255 enoyl-CoA hydratase-isomerase; Provisional 97.76
PRK05869222 enoyl-CoA hydratase; Validated 97.74
PRK06142272 enoyl-CoA hydratase; Provisional 97.73
PLN02267239 enoyl-CoA hydratase/isomerase family protein 97.72
COG1024257 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi 97.72
PRK07110249 polyketide biosynthesis enoyl-CoA hydratase; Valid 97.71
PRK05981266 enoyl-CoA hydratase; Provisional 97.7
TIGR03189251 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy 97.69
PRK09120275 p-hydroxycinnamoyl CoA hydratase/lyase; Validated 97.68
PF00378245 ECH: Enoyl-CoA hydratase/isomerase family; InterPr 97.68
cd07021178 Clp_protease_NfeD_like Nodulation formation effici 97.68
TIGR02280256 PaaB1 phenylacetate degradation probable enoyl-CoA 97.67
PRK07468262 enoyl-CoA hydratase; Provisional 97.66
PLN02664275 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA 97.65
PRK07511260 enoyl-CoA hydratase; Provisional 97.64
CHL00198 322 accA acetyl-CoA carboxylase carboxyltransferase al 97.64
PRK08140262 enoyl-CoA hydratase; Provisional 97.64
PRK08260296 enoyl-CoA hydratase; Provisional 97.63
PRK07659260 enoyl-CoA hydratase; Provisional 97.63
PRK05809260 3-hydroxybutyryl-CoA dehydratase; Validated 97.62
PRK08138261 enoyl-CoA hydratase; Provisional 97.62
PRK08252254 enoyl-CoA hydratase; Provisional 97.6
PRK09076258 enoyl-CoA hydratase; Provisional 97.6
PRK06495257 enoyl-CoA hydratase; Provisional 97.59
PRK12319 256 acetyl-CoA carboxylase subunit alpha; Provisional 97.58
PRK06190258 enoyl-CoA hydratase; Provisional 97.58
PRK08272302 enoyl-CoA hydratase; Provisional 97.56
PRK05862257 enoyl-CoA hydratase; Provisional 97.56
PRK06563255 enoyl-CoA hydratase; Provisional 97.56
PRK08139266 enoyl-CoA hydratase; Validated 97.55
PRK07827260 enoyl-CoA hydratase; Provisional 97.54
PRK06023251 enoyl-CoA hydratase; Provisional 97.54
PRK07260255 enoyl-CoA hydratase; Provisional 97.54
PLN02600251 enoyl-CoA hydratase 97.53
PRK06213229 enoyl-CoA hydratase; Provisional 97.52
PRK07327268 enoyl-CoA hydratase; Provisional 97.51
PRK06688259 enoyl-CoA hydratase; Provisional 97.51
PRK05674265 gamma-carboxygeranoyl-CoA hydratase; Validated 97.51
PRK05995262 enoyl-CoA hydratase; Provisional 97.51
PRK08258277 enoyl-CoA hydratase; Provisional 97.51
PRK07657260 enoyl-CoA hydratase; Provisional 97.48
PRK06143256 enoyl-CoA hydratase; Provisional 97.46
TIGR03210256 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb 97.46
PRK05870249 enoyl-CoA hydratase; Provisional 97.43
PRK06127269 enoyl-CoA hydratase; Provisional 97.42
PRK07938249 enoyl-CoA hydratase; Provisional 97.41
PRK05864276 enoyl-CoA hydratase; Provisional 97.41
PRK05654 292 acetyl-CoA carboxylase subunit beta; Validated 97.41
PRK06144262 enoyl-CoA hydratase; Provisional 97.41
PRK08321302 naphthoate synthase; Validated 97.4
PRK06210272 enoyl-CoA hydratase; Provisional 97.4
PRK07799263 enoyl-CoA hydratase; Provisional 97.4
PRK07509262 enoyl-CoA hydratase; Provisional 97.39
PRK07396273 dihydroxynaphthoic acid synthetase; Validated 97.39
TIGR01929259 menB naphthoate synthase (dihydroxynaphthoic acid 97.39
PLN03229 762 acetyl-coenzyme A carboxylase carboxyl transferase 97.38
PRK09245266 enoyl-CoA hydratase; Provisional 97.36
PRK08259254 enoyl-CoA hydratase; Provisional 97.36
PRK05980260 enoyl-CoA hydratase; Provisional 97.31
PLN02888265 enoyl-CoA hydratase 97.28
PRK07658257 enoyl-CoA hydratase; Provisional 97.28
cd07015172 Clp_protease_NfeD Nodulation formation efficiency 97.27
PRK06072248 enoyl-CoA hydratase; Provisional 97.25
PRK03580261 carnitinyl-CoA dehydratase; Provisional 97.24
PRK08290288 enoyl-CoA hydratase; Provisional 97.23
PRK06494259 enoyl-CoA hydratase; Provisional 97.21
TIGR00515 285 accD acetyl-CoA carboxylase, carboxyl transferase, 97.2
PLN02921327 naphthoate synthase 97.15
PLN03214278 probable enoyl-CoA hydratase/isomerase; Provisiona 97.1
cd07016160 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- 97.08
KOG0368|consensus 2196 97.04
PRK12478298 enoyl-CoA hydratase; Provisional 97.0
PRK08788287 enoyl-CoA hydratase; Validated 96.88
TIGR03222 546 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p 96.88
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 96.87
cd00394161 Clp_protease_like Caseinolytic protease (ClpP) is 96.76
PRK05617 342 3-hydroxyisobutyryl-CoA hydrolase; Provisional 96.75
COG1030 436 NfeD Membrane-bound serine protease (ClpP class) [ 96.67
PRK11730 715 fadB multifunctional fatty acid oxidation complex 96.62
TIGR03200360 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy 96.59
cd07019211 S49_SppA_1 Signal peptide peptidase A (SppA), a se 96.56
PLN02874 379 3-hydroxyisobutyryl-CoA hydrolase-like protein 96.54
cd07023208 S49_Sppa_N_C Signal peptide peptidase A (SppA), a 96.47
TIGR02437 714 FadB fatty oxidation complex, alpha subunit FadB. 96.46
KOG1680|consensus290 96.38
PLN02157 401 3-hydroxyisobutyryl-CoA hydrolase-like protein 96.32
TIGR02440 699 FadJ fatty oxidation complex, alpha subunit FadJ. 96.3
PF03255145 ACCA: Acetyl co-enzyme A carboxylase carboxyltrans 96.23
cd07022214 S49_Sppa_36K_type Signal peptide peptidase A (SppA 96.21
TIGR00706207 SppA_dom signal peptide peptidase SppA, 36K type. 96.21
PRK08184 550 benzoyl-CoA-dihydrodiol lyase; Provisional 96.18
TIGR02441 737 fa_ox_alpha_mit fatty acid oxidation complex, alph 96.17
PLN02851 407 3-hydroxyisobutyryl-CoA hydrolase-like protein 96.13
PRK11154 708 fadJ multifunctional fatty acid oxidation complex 95.99
PRK07189 301 malonate decarboxylase subunit beta; Reviewed 95.89
PRK08184550 benzoyl-CoA-dihydrodiol lyase; Provisional 95.78
cd07013162 S14_ClpP Caseinolytic protease (ClpP) is an ATP-de 95.76
COG0447282 MenB Dihydroxynaphthoic acid synthase [Coenzyme me 95.54
KOG0016|consensus266 95.53
TIGR03222546 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p 95.38
PRK12553207 ATP-dependent Clp protease proteolytic subunit; Re 95.13
PLN02988 381 3-hydroxyisobutyryl-CoA hydrolase 95.12
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 94.61
COG0825 317 AccA Acetyl-CoA carboxylase alpha subunit [Lipid m 94.61
CHL00174 296 accD acetyl-CoA carboxylase beta subunit; Reviewed 94.57
PRK00277200 clpP ATP-dependent Clp protease proteolytic subuni 94.52
cd07017171 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- 94.29
COG0616317 SppA Periplasmic serine proteases (ClpP class) [Po 94.03
TIGR00705584 SppA_67K signal peptide peptidase SppA, 67K type. 93.87
PRK14512197 ATP-dependent Clp protease proteolytic subunit; Pr 93.21
PRK11778330 putative inner membrane peptidase; Provisional 93.12
TIGR03133 274 malonate_beta malonate decarboxylase, beta subunit 92.44
TIGR00493191 clpP ATP-dependent Clp protease, proteolytic subun 92.19
PRK12551196 ATP-dependent Clp protease proteolytic subunit; Re 91.26
PF00574182 CLP_protease: Clp protease; InterPro: IPR001907 In 91.14
PF01972285 SDH_sah: Serine dehydrogenase proteinase; InterPro 90.57
PRK14514221 ATP-dependent Clp protease proteolytic subunit; Pr 90.09
CHL00028200 clpP ATP-dependent Clp protease proteolytic subuni 89.65
KOG1679|consensus291 89.55
PRK14513201 ATP-dependent Clp protease proteolytic subunit; Pr 86.8
PRK10949618 protease 4; Provisional 84.12
KOG1682|consensus287 82.87
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-78  Score=596.27  Aligned_cols=301  Identities=53%  Similarity=0.886  Sum_probs=284.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcE
Q psy11283         11 YNDVDHLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSV   90 (314)
Q Consensus        11 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gv   90 (314)
                      ..+...+...++||+++++++..+|++++++++|++||+|+||||+.|+|+|||.|+++++.+..   +...+..+++|+
T Consensus         5 ~~~~~~~~~~~~e~~~~~~~~~~~gg~~~~~~~~~~GkltaReRv~~LlD~Gsf~El~~~a~~~~---~~~~~~~~~dGv   81 (526)
T COG4799           5 GMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGSFLELGALAGHRM---GGDANELPGDGV   81 (526)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCHHHhhhccccCcCcHHHHHHHHcCCCchhhhhhhhhccc---ccccccCCCCee
Confidence            45677889999999999999999999999999999999999999999999999999999988754   223345789999


Q ss_pred             EEEEEEECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhc
Q psy11283         91 VTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILAS  170 (314)
Q Consensus        91 VtG~G~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~  170 (314)
                      |||+|+||||+|+++++|+|++|||+++.+++|+.|++++|.++++|+|+|.||+|+|+|+|..++.+++++|++++++|
T Consensus        82 VtG~G~i~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~S  161 (526)
T COG4799          82 VTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARAS  161 (526)
T ss_pred             EEeeeeeCCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccCccccccchHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHH
Q psy11283        171 GVVPQISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDA  250 (314)
Q Consensus       171 ~~VP~isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a  250 (314)
                      +.||||++|+|+|+||++|+++++|++||++++++||++||++||.+|||+++.++|||+++|+.+||++|++++||.++
T Consensus       162 g~IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~V~~e~LGGa~vh~~~sGva~~~a~dd~~A  241 (526)
T COG4799         162 GVIPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAEELGGAQVHARKSGVADLLAEDDEDA  241 (526)
T ss_pred             cCCCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcEeehhhccchhhhcccccceeeeecCHHHH
Confidence            99999999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCccC--------------------------------CCCCceeEecccCCCceeEEEEEE
Q psy11283        251 IQNVRHLLGFLPMNNTQKPPIRRC--------------------------------YDSREFFEIQPKYAKNIIVGFARI  298 (314)
Q Consensus       251 ~~~ir~~l~~lP~~~~~~~p~~~~--------------------------------~d~~~f~E~~~~~a~~vvtg~arl  298 (314)
                      ++.+|+||+|||+|+.+++|+.+.                                .|++||+|+|+.||+++|||||||
T Consensus       242 i~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~F~E~~~~~a~~iV~GfaRi  321 (526)
T COG4799         242 IELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYAKNIVTGFARI  321 (526)
T ss_pred             HHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCccHHHHHhhhCcceEEEEEEE
Confidence            999999999999999888775311                                137899999999999999999999


Q ss_pred             CCeEEEEEeeCCccCC
Q psy11283        299 NGHSVGIVANQPKVAA  314 (314)
Q Consensus       299 ~G~~VGvvAn~p~~~~  314 (314)
                      +|+|||||||||++++
T Consensus       322 ~G~pVGiIANqp~~~~  337 (526)
T COG4799         322 DGRPVGIIANQPRHLG  337 (526)
T ss_pred             CCEEEEEEecCccccc
Confidence            9999999999999864

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit Back     alignment and domain information
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain Back     alignment and domain information
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] Back     alignment and domain information
>KOG0540|consensus Back     alignment and domain information
>PRK07189 malonate decarboxylase subunit beta; Reviewed Back     alignment and domain information
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit Back     alignment and domain information
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed Back     alignment and domain information
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated Back     alignment and domain information
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit Back     alignment and domain information
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional Back     alignment and domain information
>KOG0368|consensus Back     alignment and domain information
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional Back     alignment and domain information
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit Back     alignment and domain information
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit Back     alignment and domain information
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional Back     alignment and domain information
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] Back     alignment and domain information
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain Back     alignment and domain information
>KOG0540|consensus Back     alignment and domain information
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] Back     alignment and domain information
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit Back     alignment and domain information
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] Back     alignment and domain information
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 Back     alignment and domain information
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins Back     alignment and domain information
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily Back     alignment and domain information
>PRK07854 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit Back     alignment and domain information
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated Back     alignment and domain information
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK08150 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional Back     alignment and domain information
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional Back     alignment and domain information
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional Back     alignment and domain information
>PRK05869 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK06142 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02267 enoyl-CoA hydratase/isomerase family protein Back     alignment and domain information
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] Back     alignment and domain information
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK05981 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase Back     alignment and domain information
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated Back     alignment and domain information
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix Back     alignment and domain information
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB Back     alignment and domain information
>PRK07468 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase Back     alignment and domain information
>PRK07511 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional Back     alignment and domain information
>PRK08140 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08260 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07659 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated Back     alignment and domain information
>PRK08138 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08252 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK09076 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06495 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional Back     alignment and domain information
>PRK06190 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08272 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05862 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06563 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08139 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK07827 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06023 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07260 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02600 enoyl-CoA hydratase Back     alignment and domain information
>PRK06213 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07327 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06688 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK05995 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08258 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07657 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06143 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase Back     alignment and domain information
>PRK05870 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06127 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07938 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05864 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated Back     alignment and domain information
>PRK06144 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08321 naphthoate synthase; Validated Back     alignment and domain information
>PRK06210 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07799 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07509 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07396 dihydroxynaphthoic acid synthetase; Validated Back     alignment and domain information
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PRK09245 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08259 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05980 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02888 enoyl-CoA hydratase Back     alignment and domain information
>PRK07658 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>PRK06072 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK03580 carnitinyl-CoA dehydratase; Provisional Back     alignment and domain information
>PRK08290 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06494 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit Back     alignment and domain information
>PLN02921 naphthoate synthase Back     alignment and domain information
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional Back     alignment and domain information
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>KOG0368|consensus Back     alignment and domain information
>PRK12478 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08788 enoyl-CoA hydratase; Validated Back     alignment and domain information
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease Back     alignment and domain information
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional Back     alignment and domain information
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed Back     alignment and domain information
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase Back     alignment and domain information
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB Back     alignment and domain information
>KOG1680|consensus Back     alignment and domain information
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ Back     alignment and domain information
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 Back     alignment and domain information
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type Back     alignment and domain information
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional Back     alignment and domain information
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial Back     alignment and domain information
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed Back     alignment and domain information
>PRK07189 malonate decarboxylase subunit beta; Reviewed Back     alignment and domain information
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional Back     alignment and domain information
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] Back     alignment and domain information
>KOG0016|consensus Back     alignment and domain information
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase Back     alignment and domain information
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] Back     alignment and domain information
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed Back     alignment and domain information
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type Back     alignment and domain information
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information
>PRK11778 putative inner membrane peptidase; Provisional Back     alignment and domain information
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit Back     alignment and domain information
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP Back     alignment and domain information
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily Back     alignment and domain information
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit Back     alignment and domain information
>KOG1679|consensus Back     alignment and domain information
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>KOG1682|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3n6r_B 531 Crystal Structure Of The Holoenzyme Of Propionyl-co 1e-112
1vrg_A 527 Crystal Structure Of Propionyl-coa Carboxylase, Bet 7e-96
3ibb_A 530 Propionyl-Coa Carboxylase Beta Subunit, D422a Lengt 4e-95
3mfm_C 530 Crystal Structures And Mutational Analyses Of Acyl- 4e-95
3ib9_A 530 Propionyl-Coa Carboxylase Beta Subunit, D422l Lengt 4e-95
1xnv_A 530 Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo 4e-95
3iav_A 530 Propionyl-Coa Carboxylase Beta Subunit, D422v Lengt 4e-95
1xnw_A 530 Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo 5e-95
2a7s_A 548 Crystal Structure Of The Acyl-Coa Carboxylase, Accd 3e-84
2bzr_A 548 Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Ca 3e-84
1x0u_A 522 Crystal Structure Of The Carboxyl Transferase Subun 6e-80
1on3_A 523 Transcarboxylase 12s Crystal Structure: Hexamer Ass 1e-75
3u9r_B 555 Crystal Structure Of P. Aeruginosa 3-methylcrotonyl 2e-34
3gf3_A 588 Glutaconyl-Coa Decarboxylase A Subunit From Clostri 1e-14
2f9i_B285 Crystal Structure Of The Carboxyltransferase Subuni 2e-12
2f9y_B304 The Crystal Structure Of The Carboxyltransferase Su 3e-12
1pix_A 587 Crystal Structure Of The Carboxyltransferase Subuni 3e-10
3ff6_A 760 Human Acc2 Ct Domain With Cp-640186 Length = 760 4e-07
3tdc_A 762 Crystal Structure Of Human Acetyl-Coa Carboxylase 2 4e-07
4asi_A 769 Crystal Structure Of Human Acaca C-Terminal Domain 4e-07
2x24_A 793 Bovine Acc2 Ct Domain In Complex With Inhibitor Len 3e-05
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 531 Back     alignment and structure 
Iteration: 1

 Score =  402 bits (1032), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/332 (58%), Positives = 241/332 (72%), Gaps = 33/332 (9%)
Query: 16  HLMR-VRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHR 74
           H+M+ +  Q++  RA A  GGG K I AQH +GKLTARERV+LL D G+F E+DMF+ HR
Sbjct: 20  HMMKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHR 79
Query: 75  CVDFNMSEKKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLT 134
           C DFNM ++K  GD VVTG G++NGR V++FSQDFTV GGS+S  H++KICKIMD AM  
Sbjct: 80  CTDFNMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN 139
Query: 135 GAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAIT 194
           GAP++G+NDSGGARIQEGV+SLA Y  VFQRNI+ASGVVPQIS+I+GPCAGGAVYSPA+T
Sbjct: 140 GAPVIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMT 199
Query: 195 DFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNV 254
           DF FMV+ SSY+F+TGPDV+K+VTNE +S EELGGA THT  S VA  AF ND++A+  V
Sbjct: 200 DFIFMVKDSSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEV 259
Query: 255 RHLLGFLPMNNTQKPPIR--------------------------------RCYDSREFFE 282
           R L+ FLP+NN +KPP+R                                +  D  +F+E
Sbjct: 260 RRLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYE 319
Query: 283 IQPKYAKNIIVGFARINGHSVGIVANQPKVAA 314
           IQ ++AKNII GF R+ G +VG+VANQP V A
Sbjct: 320 IQEEFAKNIITGFIRLEGRTVGVVANQPLVLA 351
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta Subunit (tm0716) From Thermotoga Maritima At 2.30 A Resolution Length = 527 Back     alignment and structure
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a Length = 530 Back     alignment and structure
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa Carboxylase Subunit Of Streptomyces Coelicolor Length = 530 Back     alignment and structure
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l Length = 530 Back     alignment and structure
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #1 Length = 530 Back     alignment and structure
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v Length = 530 Back     alignment and structure
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #2, Mutant D422i Length = 530 Back     alignment and structure
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From Mycobacterium Tuberculosis Length = 548 Back     alignment and structure
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Carboxylase Beta-Subunit From Mycobacterium Tuberculosis Length = 548 Back     alignment and structure
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of Putative Pcc Of Sulfolobus Tokodaii Length = 522 Back     alignment and structure
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly And Substrate Binding To A Multienzyme Core (With Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound) Length = 523 Back     alignment and structure
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc), Beta Subunit Length = 555 Back     alignment and structure
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co-Crystallized With Glutaconyl-Coa Length = 588 Back     alignment and structure
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of Acc From Staphylococcus Aureus Length = 285 Back     alignment and structure
>pdb|2F9Y|B Chain B, The Crystal Structure Of The Carboxyltransferase Subunit Of Acc From Escherichia Coli Length = 304 Back     alignment and structure
>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of The Bacterial Ion Pump Glutaconyl-Coenzyme A Decarboxylase Length = 587 Back     alignment and structure
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186 Length = 760 Back     alignment and structure
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2 Length = 762 Back     alignment and structure
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain Length = 769 Back     alignment and structure
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor Length = 793 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2bzr_A 548 Propionyl-COA carboxylase beta chain 5; fatty acid 0.0
3n6r_B 531 Propionyl-COA carboxylase, beta subunit; protein c 0.0
1vrg_A 527 Propionyl-COA carboxylase, beta subunit; TM0716, s 0.0
3iav_A 530 Propionyl-COA carboxylase complex B subunit; accas 0.0
1x0u_A 522 Hypothetical methylmalonyl-COA decarboxylase ALPH; 0.0
1on3_A 523 Methylmalonyl-COA carboxyltransferase 12S subunit; 0.0
2x24_A 793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 1e-130
2x24_A 793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 2e-10
3gf3_A 588 Glutaconyl-COA decarboxylase subunit A; sodium ION 1e-121
1pix_A 587 Glutaconyl-COA decarboxylase A subunit; biotin-dep 1e-119
3u9r_B 555 MCC beta, methylcrotonyl-COA carboxylase, beta-sub 1e-102
3k8x_A 758 Acetyl-COA carboxylase; transferase, carboxyltrans 5e-87
3k8x_A 758 Acetyl-COA carboxylase; transferase, carboxyltrans 9e-09
2f9i_B285 Acetyl-coenzyme A carboxylase carboxyl transferase 1e-22
2f9y_B304 Acetyl-coenzyme A carboxylase carboxyl transferas 4e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Length = 548 Back     alignment and structure
 Score =  536 bits (1382), Expect = 0.0
 Identities = 163/330 (49%), Positives = 205/330 (62%), Gaps = 38/330 (11%)

Query: 23  QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
           ++   R  +L   G  +++  H KGKLTARER+  L D  +FVE D   +HR  +FN+ E
Sbjct: 31  ELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGE 90

Query: 83  KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
           K+  GD VVTG G+++GR V IFSQD TVFGGSL  V+ EKI K+ + A+ TG P++G+N
Sbjct: 91  KRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 150

Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
           D  GARIQEGV SL  YS +F+ NILASGV+PQISLI+G  AGG VYSPA+TDF  MV+ 
Sbjct: 151 DGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQ 210

Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
           +S +FITGPDVIK+VT E+++ EELGGA TH + SG AH A S + DA   VR LL +LP
Sbjct: 211 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 270

Query: 263 MNNTQKPPIRRC-----------------------------YDSRE---------FFEIQ 284
            NN+   P  +                              YD  E         F EIQ
Sbjct: 271 PNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDDEFLEIQ 330

Query: 285 PKYAKNIIVGFARINGHSVGIVANQPKVAA 314
             YA+NI+VGF RI+G  VGIVANQP   A
Sbjct: 331 AGYAQNIVVGFGRIDGRPVGIVANQPTHFA 360
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Length = 531 Back     alignment and structure
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Length = 527 Back     alignment and structure
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Length = 530 Back     alignment and structure
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Length = 522 Back     alignment and structure
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Length = 793 Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Length = 793 Back     alignment and structure
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 Back     alignment and structure
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 Back     alignment and structure
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 Back     alignment and structure
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Length = 285 Back     alignment and structure
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Length = 304 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
3n6r_B 531 Propionyl-COA carboxylase, beta subunit; protein c 100.0
3iav_A 530 Propionyl-COA carboxylase complex B subunit; accas 100.0
2bzr_A 548 Propionyl-COA carboxylase beta chain 5; fatty acid 100.0
1on3_A 523 Methylmalonyl-COA carboxyltransferase 12S subunit; 100.0
1x0u_A 522 Hypothetical methylmalonyl-COA decarboxylase ALPH; 100.0
1vrg_A 527 Propionyl-COA carboxylase, beta subunit; TM0716, s 100.0
3u9r_B 555 MCC beta, methylcrotonyl-COA carboxylase, beta-sub 100.0
3gf3_A 588 Glutaconyl-COA decarboxylase subunit A; sodium ION 100.0
1pix_A 587 Glutaconyl-COA decarboxylase A subunit; biotin-dep 100.0
2x24_A 793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 100.0
3k8x_A 758 Acetyl-COA carboxylase; transferase, carboxyltrans 100.0
2f9i_B285 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
2f9y_B304 Acetyl-coenzyme A carboxylase carboxyl transferas 100.0
1x0u_A522 Hypothetical methylmalonyl-COA decarboxylase ALPH; 100.0
2f9i_A327 Acetyl-coenzyme A carboxylase carboxyl transferase 99.97
2f9y_A339 Acetyl-COA carboxylase, carboxyltransferase alpha; 99.97
1vrg_A527 Propionyl-COA carboxylase, beta subunit; TM0716, s 99.96
3n6r_B531 Propionyl-COA carboxylase, beta subunit; protein c 99.95
3iav_A530 Propionyl-COA carboxylase complex B subunit; accas 99.95
2bzr_A548 Propionyl-COA carboxylase beta chain 5; fatty acid 99.95
1on3_A523 Methylmalonyl-COA carboxyltransferase 12S subunit; 99.95
3gf3_A588 Glutaconyl-COA decarboxylase subunit A; sodium ION 99.92
3u9r_B555 MCC beta, methylcrotonyl-COA carboxylase, beta-sub 99.92
1pix_A587 Glutaconyl-COA decarboxylase A subunit; biotin-dep 99.91
3k8x_A 758 Acetyl-COA carboxylase; transferase, carboxyltrans 99.87
2x24_A 793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 99.85
2f9i_A 327 Acetyl-coenzyme A carboxylase carboxyl transferase 98.22
2f9y_A 339 Acetyl-COA carboxylase, carboxyltransferase alpha; 98.14
2f9i_B 285 Acetyl-coenzyme A carboxylase carboxyl transferase 98.12
3viv_A230 441AA long hypothetical NFED protein; protein-pept 98.0
3lke_A263 Enoyl-COA hydratase; nysgrc, target 112 structural 97.91
2f6q_A280 Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis 97.78
2a7k_A250 CARB; crotonase, antibiotic, beta-lactam, biosynth 97.74
2pbp_A258 Enoyl-COA hydratase subunit I; B-oxidation, struct 97.73
3hp0_A267 Putative polyketide biosynthesis enoyl-COA hydrata 97.73
1dci_A275 Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg 97.73
3gow_A254 PAAG, probable enoyl-COA hydratase; the spiral fol 97.71
3r6h_A233 Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m 97.7
3he2_A264 Enoyl-COA hydratase ECHA6; fatty acid metabolism, 97.7
3hrx_A254 Probable enoyl-COA hydratase; the spiral fold, the 97.69
2fbm_A291 Y chromosome chromodomain protein 1, telomeric IS; 97.65
3qmj_A256 Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, 97.64
3l3s_A263 Enoyl-COA hydratase/isomerase family protein; crot 97.64
2ppy_A265 Enoyl-COA hydratase; beta-oxidation, fatty acid me 97.63
4fzw_C274 1,2-epoxyphenylacetyl-COA isomerase; structural ge 97.62
2ej5_A257 Enoyl-COA hydratase subunit II; structural genomic 97.61
3isa_A254 Putative enoyl-COA hydratase/isomerase; structural 97.61
1ef8_A261 Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc 97.6
1nzy_A269 Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen 97.56
3kqf_A265 Enoyl-COA hydratase/isomerase family protein; IDP0 97.55
2gtr_A261 CDY-like, chromodomain Y-like protein; structural 97.54
3fdu_A266 Putative enoyl-COA hydratase/isomerase; structural 97.52
4di1_A277 Enoyl-COA hydratase ECHA17; structural genomics, s 97.52
3pea_A261 Enoyl-COA hydratase/isomerase family protein; stru 97.52
3hin_A275 Putative 3-hydroxybutyryl-COA dehydratase; structu 97.5
3ot6_A232 Enoyl-COA hydratase/isomerase family protein; stru 97.5
3gkb_A287 Putative enoyl-COA hydratase; structural genomics, 97.49
3i47_A268 Enoyl COA hydratase/isomerase (crotonase); structu 97.46
1hzd_A272 AUH, AU-binding protein/enoyl-COA hydratase; RNA-b 97.45
3oc7_A267 Enoyl-COA hydratase; seattle structural genomics c 97.45
3myb_A286 Enoyl-COA hydratase; ssgcid, struct genomics, seat 97.43
3sll_A290 Probable enoyl-COA hydratase/isomerase; structural 97.42
3p5m_A255 Enoyl-COA hydratase/isomerase; seattle structural 97.42
3rrv_A276 Enoyl-COA hydratase/isomerase; structural genomics 97.41
1uiy_A253 Enoyl-COA hydratase; lyase, beta-oxidation, croton 97.4
3t3w_A279 Enoyl-COA hydratase; ssgcid, structural genomics, 97.4
3t89_A289 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase 97.4
1sg4_A260 3,2-trans-enoyl-COA isomerase, mitochondrial; crot 97.39
2vx2_A287 Enoyl-COA hydratase domain-containing protein 3; i 97.37
4fzw_A258 2,3-dehydroadipyl-COA hydratase; structural genomi 97.36
3h0u_A289 Putative enoyl-COA hydratase; structural genomics, 97.35
2j5i_A276 P-hydroxycinnamoyl COA hydratase/lyase; vanillin, 97.33
3njd_A333 Enoyl-COA hydratase; ssgcid, mycobacerium smegmati 97.33
2q35_A243 CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} 97.32
3rsi_A265 Putative enoyl-COA hydratase/isomerase; structural 97.31
3m6n_A305 RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X 97.31
3t8b_A334 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase 97.3
4eml_A275 Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe 97.26
3moy_A263 Probable enoyl-COA hydratase; ssgcid, seattle stru 97.26
3g64_A279 Putative enoyl-COA hydratase; alpha-beta structure 97.26
3qk8_A272 Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB 97.25
1wz8_A264 Enoyl-COA hydratase; lyase, crotonase, hexamer, st 97.24
3qre_A298 Enoyl-COA hydratase, ECHA12_1; structural genomics 97.21
2f9y_B 304 Acetyl-coenzyme A carboxylase carboxyl transferas 97.2
3h81_A278 Enoyl-COA hydratase ECHA8; niaid, decode, infectio 97.19
4f47_A278 Enoyl-COA hydratase ECHA19; ssgcid, seattle struct 97.14
3pe8_A256 Enoyl-COA hydratase; emerald biostructures, struct 97.12
2uzf_A273 Naphthoate synthase; lyase, menaquinone biosynthes 97.11
1mj3_A260 Enoyl-COA hydratase, mitochondrial; homohexamer, l 97.07
1pjh_A280 Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral 97.05
2j5g_A263 ALR4455 protein; enzyme evolution, C-C bond hydrol 97.05
3qxi_A265 Enoyl-COA hydratase ECHA1; structural genomics, se 96.95
3trr_A256 Probable enoyl-COA hydratase/isomerase; ssgcid, st 96.92
3swx_A265 Probable enoyl-COA hydratase/isomerase; structural 96.9
3qxz_A265 Enoyl-COA hydratase/isomerase; structural genomics 96.88
1szo_A257 6-oxocamphor hydrolase; enzyme-product complex; HE 96.88
3r9t_A267 ECHA1_1; ssgcid, seattle structural genomics cente 96.85
3zwc_A 742 Peroxisomal bifunctional enzyme; beta oxidation pa 96.85
1y7o_A218 ATP-dependent CLP protease proteolytic subunit; hy 96.85
3lao_A258 Enoyl-COA hydratase/isomerase; alpha-beta sandwich 96.81
3bf0_A593 Protease 4; bacterial, hydrolase, inner membrane, 96.81
4hdt_A353 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti 96.8
3tlf_A274 Enoyl-COA hydratase/isomerase; structural genomics 96.76
3r9q_A262 Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome 96.74
2cby_A208 ATP-dependent CLP protease proteolytic subunit 1; 96.7
2np9_A440 DPGC; protein inhibitor complex, oxidoreductase; H 96.61
2w3p_A 556 Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri 96.6
2f6i_A215 ATP-dependent CLP protease, putative; structural g 96.55
3bpt_A 363 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet 96.54
1yg6_A193 ATP-dependent CLP protease proteolytic subunit; en 96.51
1wdk_A 715 Fatty oxidation complex alpha subunit; alpha2BETA2 96.45
3ju1_A 407 Enoyl-COA hydratase/isomerase family protein; alph 96.21
3qwd_A203 ATP-dependent CLP protease proteolytic subunit; ca 96.09
3p2l_A201 ATP-dependent CLP protease proteolytic subunit; st 95.82
1tg6_A277 Putative ATP-dependent CLP protease proteolytic S; 95.74
2wtb_A 725 MFP2, fatty acid multifunctional protein (ATMFP2); 95.07
3rst_A240 Signal peptide peptidase SPPA; alpha/beta protein 94.7
4gm2_A205 ATP-dependent CLP protease proteolytic subunit; st 92.47
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Back     alignment and structure
Probab=100.00  E-value=7.9e-77  Score=592.35  Aligned_cols=298  Identities=64%  Similarity=1.074  Sum_probs=277.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEE
Q psy11283         16 HLMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRG   95 (314)
Q Consensus        16 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G   95 (314)
                      +|.+++++|++|++++.++|++++++|||++||+++||||+.|+|+|||.|++.+..+.+.+|+++.+..++++||||+|
T Consensus        21 ~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~gkltaReRI~~LlD~gSF~E~~~~~~~~~~~~~~~~~~~~~dgVVtG~G  100 (531)
T 3n6r_B           21 MMKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHRCTDFNMQDQKPAGDGVVTGWG  100 (531)
T ss_dssp             -----CHHHHHHHHHHTTTTCHHHHHHHHHTTCCCHHHHHHHHSSSSCCEEECTTCCCCCCGGGGGGCCCTTTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCHHHHHHHhcCCCceEEcCCccccCCcccccccccCCCCCEEEEEE
Confidence            46889999999999999999999999999999999999999999999999999998776777776666788999999999


Q ss_pred             EECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCE
Q psy11283         96 SVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQ  175 (314)
Q Consensus        96 ~I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~  175 (314)
                      +|+|++|+|+++|+||+|||+|+.+++|+.|++++|.++++|+|+|+||+|+|||||..+|.+++++|.++++.++.||+
T Consensus       101 ~I~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSGGARmqeg~~sl~~~~~i~~~~~~~s~~iP~  180 (531)
T 3n6r_B          101 TINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQ  180 (531)
T ss_dssp             EETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGTHHHHHHHHHHHHHHHHTTTTSCE
T ss_pred             EECCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCCEEEEeCCCccccCcccchhhhHHHHHHHHHHHhCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEEEeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHH
Q psy11283        176 ISLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVR  255 (314)
Q Consensus       176 isvv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir  255 (314)
                      |++|+|||+||++|+++++|++||++++++|+|+||++||+++||+++.|+|||+++|+.++|++|++++||+++++.+|
T Consensus       181 Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aGP~vI~~~~ge~v~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r  260 (531)
T 3n6r_B          181 ISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVR  260 (531)
T ss_dssp             EEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHHHHHCCCCCHHHHHBHHHHHHTTSCCSEEESSHHHHHHHHH
T ss_pred             EEEEeCCcchHHHHHhhhCCEEEEecCCceEeecCHHHHHHHhCCccChhhcchHHHHhhccCcceEEeCCHHHHHHHHH
Confidence            99999999999999999999999999879999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCccC--------------------------------CCCCceeEecccCCCceeEEEEEECCeEE
Q psy11283        256 HLLGFLPMNNTQKPPIRRC--------------------------------YDSREFFEIQPKYAKNIIVGFARINGHSV  303 (314)
Q Consensus       256 ~~l~~lP~~~~~~~p~~~~--------------------------------~d~~~f~E~~~~~a~~vvtg~arl~G~~V  303 (314)
                      +||+|||.|+.+.||..++                                .|.++|+|++++||+++|||||||+|+||
T Consensus       261 ~lls~Lp~~~~~~~p~~~~~d~~~~~~~~l~~ivp~~~~~pyd~r~vI~~l~D~~~f~E~~~~~~~~iV~G~arl~G~~V  340 (531)
T 3n6r_B          261 RLVDFLPLNNREKPPVRPFFDDPDRIEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYEIQEEFAKNIITGFIRLEGRTV  340 (531)
T ss_dssp             HHHTTSCSSSSSCCCBCCCCSCTTCCCGGGGGTSCSSTTCCCCHHHHHHHHSTTSCCEEESTTSSTTEEEEEEEETTEEE
T ss_pred             HHHHhccccCCCCCCCCCCCCCcccChHHHHhhCCCCcCCCcCHHHHHHhccCCcceEEecccCCCcEEEEEEEECCEEE
Confidence            9999999998765543221                                13679999999999999999999999999


Q ss_pred             EEEeeCCccC
Q psy11283        304 GIVANQPKVA  313 (314)
Q Consensus       304 GvvAn~p~~~  313 (314)
                      |||||||.++
T Consensus       341 gvian~~~~~  350 (531)
T 3n6r_B          341 GVVANQPLVL  350 (531)
T ss_dssp             EEEEECTTTG
T ss_pred             EEEEeccccc
Confidence            9999999765
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Back     alignment and structure
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Back     alignment and structure
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Back     alignment and structure
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Back     alignment and structure
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Back     alignment and structure
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Back     alignment and structure
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Back     alignment and structure
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Back     alignment and structure
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Back     alignment and structure
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Back     alignment and structure
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Back     alignment and structure
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Back     alignment and structure
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Back     alignment and structure
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Back     alignment and structure
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Back     alignment and structure
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Back     alignment and structure
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Back     alignment and structure
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Back     alignment and structure
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Back     alignment and structure
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Back     alignment and structure
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Back     alignment and structure
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Back     alignment and structure
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* Back     alignment and structure
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} Back     alignment and structure
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Back     alignment and structure
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Back     alignment and structure
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Back     alignment and structure
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Back     alignment and structure
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} Back     alignment and structure
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Back     alignment and structure
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Back     alignment and structure
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Back     alignment and structure
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Back     alignment and structure
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Back     alignment and structure
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Back     alignment and structure
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Back     alignment and structure
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Back     alignment and structure
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Back     alignment and structure
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Back     alignment and structure
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Back     alignment and structure
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 Back     alignment and structure
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Back     alignment and structure
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 Back     alignment and structure
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Back     alignment and structure
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Back     alignment and structure
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Back     alignment and structure
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Back     alignment and structure
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Back     alignment and structure
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Back     alignment and structure
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A Back     alignment and structure
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Back     alignment and structure
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Back     alignment and structure
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} Back     alignment and structure
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Back     alignment and structure
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Back     alignment and structure
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Back     alignment and structure
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Back     alignment and structure
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Back     alignment and structure
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Back     alignment and structure
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Back     alignment and structure
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Back     alignment and structure
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Back     alignment and structure
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Back     alignment and structure
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A Back     alignment and structure
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Back     alignment and structure
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Back     alignment and structure
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Back     alignment and structure
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Back     alignment and structure
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Back     alignment and structure
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Back     alignment and structure
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Back     alignment and structure
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Back     alignment and structure
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Back     alignment and structure
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Back     alignment and structure
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Back     alignment and structure
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Back     alignment and structure
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 Back     alignment and structure
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Back     alignment and structure
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A Back     alignment and structure
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Back     alignment and structure
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Back     alignment and structure
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Back     alignment and structure
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} Back     alignment and structure
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 Back     alignment and structure
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Back     alignment and structure
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Back     alignment and structure
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Back     alignment and structure
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Back     alignment and structure
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Back     alignment and structure
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Back     alignment and structure
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Back     alignment and structure
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Back     alignment and structure
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Back     alignment and structure
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Back     alignment and structure
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 Back     alignment and structure
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Back     alignment and structure
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Back     alignment and structure
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1xnya1258 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase comp 1e-83
d1vrga1251 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase compl 3e-78
d2a7sa1258 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase comp 2e-74
d1on3a1253 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltrans 9e-66
d2f9yb1263 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase 1e-48
d1pixa2287 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A 8e-47
d1uyra1333 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla 3e-43
d1uyra2 404 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxyla 9e-14
d1pixa3 299 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase 2e-11
d1pixa3299 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase 5e-08
d1xnya2263 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com 7e-11
d1xnya2 263 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com 4e-06
d2a7sa2271 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase com 5e-10
d2a7sa2 271 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase com 2e-05
d1on3a2264 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltra 6e-07
d1on3a2 264 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltra 1e-06
d1vrga2264 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase com 9e-07
d1vrga2 264 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase com 1e-04
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 258 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

 Score =  250 bits (640), Expect = 1e-83
 Identities = 145/248 (58%), Positives = 186/248 (75%)

Query: 23  QIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSE 82
            +      A   G  ++++ QH KGKLTARER++LL D G+FVE D F  HR  +F +  
Sbjct: 11  DLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDA 70

Query: 83  KKIPGDSVVTGRGSVNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLN 142
            +  GD VVTG G+V+GR V +FSQDFTVFGG+L  V+ +KI K+MD A+ TG P+VG+N
Sbjct: 71  NRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGIN 130

Query: 143 DSGGARIQEGVESLAAYSSVFQRNILASGVVPQISLILGPCAGGAVYSPAITDFTFMVEH 202
           DSGGARIQEGV SL AY  +F+RN  ASGV+PQISL++GPCAGGAVYSPAITDFT MV+ 
Sbjct: 131 DSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQ 190

Query: 203 SSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRHLLGFLP 262
           +S++FITGPDVIK+VT ED+  EELGGA+TH S SGVAH+   ++ DA++ V+ LL +LP
Sbjct: 191 TSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP 250

Query: 263 MNNTQKPP 270
            NN  +PP
Sbjct: 251 SNNLSEPP 258
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 251 Back     information, alignment and structure
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 258 Back     information, alignment and structure
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 253 Back     information, alignment and structure
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Length = 263 Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 287 Back     information, alignment and structure
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333 Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 404 Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 271 Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 271 Back     information, alignment and structure
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 264 Back     information, alignment and structure
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 264 Back     information, alignment and structure
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 264 Back     information, alignment and structure
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 264 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1xnya1258 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d2a7sa1258 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1vrga1251 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1on3a1253 Methylmalonyl-CoA carboxyltransferase (transcarbox 100.0
d1pixa2287 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 100.0
d2f9yb1263 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
d1uyra1333 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 100.0
d2a7sa2271 Propionyl-CoA carboxylase complex B subunit, PccB 99.97
d1xnya2263 Propionyl-CoA carboxylase complex B subunit, PccB 99.97
d1on3a2264 Methylmalonyl-CoA carboxyltransferase (transcarbox 99.97
d1vrga2264 Propionyl-CoA carboxylase complex B subunit, PccB 99.97
d1pixa3299 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 99.96
d2f9ya1316 Acetyl-coenzyme A carboxylase carboxyl transferase 99.93
d1uyra2404 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 99.85
d1on3a2 264 Methylmalonyl-CoA carboxyltransferase (transcarbox 99.25
d1vrga2 264 Propionyl-CoA carboxylase complex B subunit, PccB 99.19
d1xnya2 263 Propionyl-CoA carboxylase complex B subunit, PccB 99.17
d1pixa3 299 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 99.17
d2a7sa2 271 Propionyl-CoA carboxylase complex B subunit, PccB 99.17
d1uyra2 404 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 99.1
d2a7ka1230 Carbapenem biosynthes protein CarB {Pectobacterium 97.9
d2fw2a1258 Chromodomain protein CDY2A {Human (Homo sapiens) [ 97.83
d2f6qa1245 Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( 97.74
d1pixa2 287 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 97.73
d1ef8a_261 Methylmalonyl CoA decarboxylase {Escherichia coli 97.65
d1pjha_266 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 97.6
d1uiya_253 Enoyl-CoA hydratase (crotonase) {Thermus thermophi 97.6
d1dcia_275 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 97.54
d1wdka4310 Fatty oxidation complex alpha subunit, N-terminal 97.53
d1q52a_297 Naphthoate synthase MenB {Mycobacterium tuberculos 97.53
d1sg4a1249 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 97.52
d1hzda_266 AUH protein {Human (Homo sapiens) [TaxId: 9606]} 97.4
d1nzya_269 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., 97.26
d1mj3a_260 Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve 97.13
d1wz8a1263 Probable enoyl-CoA hydratase TTHA0218 {Thermus the 97.04
d1szoa_249 6-oxo camphor hydrolase {Rhodococcus erythropolis 96.89
d1vrga1 251 Propionyl-CoA carboxylase complex B subunit, PccB 96.63
d1xnya1 258 Propionyl-CoA carboxylase complex B subunit, PccB 96.58
d1on3a1 253 Methylmalonyl-CoA carboxyltransferase (transcarbox 95.71
d2a7sa1 258 Propionyl-CoA carboxylase complex B subunit, PccB 95.61
d2f9yb1 263 Acetyl-coenzyme A carboxylase carboxyl transferase 95.31
d2f9ya1 316 Acetyl-coenzyme A carboxylase carboxyl transferase 93.88
d1yg6a1183 Clp protease, ClpP subunit {Escherichia coli [TaxI 91.54
d2cbya1179 Clp protease, ClpP subunit {Mycobacterium tubercul 88.65
d1tg6a1193 Clp protease, ClpP subunit {Human (Homo sapiens), 87.54
d1y7oa1192 Clp protease, ClpP subunit {Streptococcus pneumoni 87.21
d2f6ia1190 Clp protease, ClpP subunit {Plasmodium falciparum 85.5
d1uyra1 333 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 85.3
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=3.5e-66  Score=474.74  Aligned_cols=254  Identities=57%  Similarity=0.933  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHhcCCCCHHHHHHhhcCCCcceeecccccccccCcccccCCCCCCcEEEEEEE
Q psy11283         17 LMRVRGQIDSMRAIALQGGGTKSIQAQHNKGKLTARERVELLCDPGTFVEYDMFMEHRCVDFNMSEKKIPGDSVVTGRGS   96 (314)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~l~arerI~~L~D~gsf~E~~~~~~~~~~~~~~~~~~~~~~gvVtG~G~   96 (314)
                      +...++||++|++++.++|++++++|||++||||+||||+.|+|+|||.|++.+......+........+++++|+|+|+
T Consensus         5 ~~~~l~eL~~r~~~~~~~gg~~~v~k~h~~GkltaReRi~~L~D~gsF~E~~~~~~~~~~~~~~~~~~~~~d~vv~G~G~   84 (258)
T d1xnya1           5 TAGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGT   84 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCCCHHHHHHHHcCCCCCccccchhcccccccccccccCCCCeeEEEEEE
Confidence            56789999999999999999999999999999999999999999999999998876544444334455678999999999


Q ss_pred             ECCEEEEEEEEcccccCCCcCHHHHHHHHHHHHHHHHhCCCeEEEecCCCcccccchhHHhhHHHHHHHHHHhcCCCCEE
Q psy11283         97 VNGRTVFIFSQDFTVFGGSLSSVHAEKICKIMDQAMLTGAPIVGLNDSGGARIQEGVESLAAYSSVFQRNILASGVVPQI  176 (314)
Q Consensus        97 I~Gr~v~v~a~D~t~~gGs~g~~~~~K~~r~~~~A~~~~lPvV~l~ds~Garl~eg~~~l~~~~~~~~~~~~~~~~VP~i  176 (314)
                      |||++|+|+++||+|+|||+++.+++|+.|++++|.++++|+|+|.||+|+||+|+..++.++++++..+...++.||+|
T Consensus        85 I~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~dsgGarm~e~~~~~~~~~~~~~~~~~~s~~vP~I  164 (258)
T d1xnya1          85 VDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQI  164 (258)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTTTSCEE
T ss_pred             ECCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcCCceEEEecCCCcccCcccccccchhHHHHHHHHHcCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             EEEeCCCCccccccccCCCEEEEecCceeEEEccHhhhhhhhcccCCccccCCchhhccccCceeeEecCHHHHHHHHHH
Q psy11283        177 SLILGPCAGGAVYSPAITDFTFMVEHSSYLFITGPDVIKSVTNEDISQEELGGAKTHTSVSGVAHNAFSNDIDAIQNVRH  256 (314)
Q Consensus       177 svv~G~~~Gg~a~~~~~~D~vi~~~~~a~i~~~GP~vv~~~~ge~v~~~~lGGa~~h~~~~Gv~d~~~~de~~a~~~ir~  256 (314)
                      ++++|||+||++|+++++|++||++++++|+++||++|+.++|+++++++|||+++|..++|++|++++||.++++.+|+
T Consensus       165 ~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP~vv~~~~ge~i~~eelgga~~h~~~sG~~d~v~~de~ea~~~~r~  244 (258)
T d1xnya1         165 SLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQ  244 (258)
T ss_dssp             EEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHH
T ss_pred             EEEcCCcChhHHHHHHhccchhhcccceEEEecCHHHHHHHhcCccChHHhccHHHHHhcCCeeEEEeCCHHHHHHHHHH
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCC
Q psy11283        257 LLGFLPMNNTQKPP  270 (314)
Q Consensus       257 ~l~~lP~~~~~~~p  270 (314)
                      +|||||+|+++.||
T Consensus       245 ~Ls~lP~~~~e~pP  258 (258)
T d1xnya1         245 LLSYLPSNNLSEPP  258 (258)
T ss_dssp             HHHHSCSSTTSCCC
T ss_pred             HHHhcccccccCCC
Confidence            99999999999987
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Back     information, alignment and structure
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure