Psyllid ID: psy1128

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
ccEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccEEEEccEEEEcccccEEEEEEEccccHHHHHHHHHcccEEEEEcccccccccccccccEEEcccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccccccccEEEEcc
ccEEEEcccccHHHHHccHHHEcEEEEEcccEcccccEcHHHcccccccccEcccccEEEEEEEEccccccccccccccHHHHHHHcccEEEEcccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccccccHHEEEcccccEEcccccccEEEEEEccHHHHHHHHHHHcccEEEEEcccccHHHHHHHcccHcccccccEEEEEEccccEEEEcccccccccccccccHHHHHHHHHcccccccccccEEEEEEcccccEEEccccccccccccEEEEEEEcccccEEEEEccccccccccccHHHHHHHHHHHHHHHccccEEEEEEc
mryvfqtgmvgypeamtdpsyhQQILVLTyplignygvppqdkdehgILKYFESHRIWISGlivgdmcdtpshwnsasTLGEWLRahnipalanvdtrRLTKHIRECGvvsgkivhgsvaplavTVEDLvfvdpnrgnlvdqvstkevvtynptgsvHLCVVDCGLKYNQLRCLIQRgaklsvipwnhpikvpqgwqplftnandgtnegivheslpffsvqfhpehtagpadLELLFDIFINAvrdsktrtpvppirktiydtlvpkDEALIAKsfqtpkktsvrkmredngirpynkQIDTLaaehpaqtNYLYLTYNATAHDLAVKETVSIIKG
MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPnrgnlvdqvstkevvtynptgSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVrdsktrtpvppirktiydtlvpkdealiaksfqtpkktsvrkmredngirpYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
**YVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIA************************KQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSI***
MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK************************************RKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
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MRYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPIKVPQGWQPLFTNANDGTNEGIVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSKTRTPVPPIRKTIYDTLVPKDEALIAKSFQTPKKTSVRKMREDNGIRPYNKQIDTLAAEHPAQTNYLYLTYNATAHDLAVKETVSIIKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
P27708 2225 CAD protein OS=Homo sapie yes N/A 0.584 0.088 0.532 9e-59
P08955 2225 CAD protein OS=Mesocricet N/A N/A 0.584 0.088 0.532 3e-58
Q91437 2242 CAD protein OS=Squalus ac N/A N/A 0.534 0.080 0.529 2e-53
P22572453 Carbamoyl-phosphate synth N/A N/A 0.593 0.441 0.463 3e-47
Q2H132461 Carbamoyl-phosphate synth N/A N/A 0.593 0.433 0.458 4e-47
P05990 2224 CAD protein OS=Drosophila yes N/A 0.590 0.089 0.471 1e-46
P87183453 Carbamoyl-phosphate synth N/A N/A 0.593 0.441 0.453 6e-43
Q6C9Y4448 Carbamoyl-phosphate synth no N/A 0.545 0.410 0.468 7e-43
P07259 2214 Protein URA2 OS=Saccharom yes N/A 0.593 0.090 0.428 8e-43
Q0U5H7476 Carbamoyl-phosphate synth N/A N/A 0.593 0.420 0.434 1e-42
>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3 Back     alignment and function desciption
 Score =  227 bits (579), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 139/203 (68%), Gaps = 6/203 (2%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VFQTGMVGYPEA+TDPSY  QILVLTYPLIGNYG+PP + DE G+ K+FES  I ++ L+
Sbjct: 28  VFQTGMVGYPEALTDPSYKAQILVLTYPLIGNYGIPPDEMDEFGLCKWFESSGIHVAALV 87

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           VG+ C TPSHW++  TL EWL+ H IP L  VDTR LTK +RE G + GK+V     P  
Sbjct: 88  VGECCPTPSHWSATRTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQNGTEP-- 145

Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
                L F+DPN   LV +VS K    +N  G+  +  +DCGLKYNQ+RCL QRGA+++V
Sbjct: 146 ---SSLPFLDPNARPLVPEVSIKTPRVFNTGGAPRILALDCGLKYNQIRCLCQRGAEVTV 202

Query: 184 IPWNHPIKVPQGWQPLFTNANDG 206
           +PW+H +   Q ++ LF +   G
Sbjct: 203 VPWDHALD-SQEYEGLFLSNGPG 224
This protein is a "fusion" protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 3
>sp|P08955|PYR1_MESAU CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV=4 Back     alignment and function description
>sp|Q91437|PYR1_SQUAC CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1 Back     alignment and function description
>sp|P22572|CARA_NEUCR Carbamoyl-phosphate synthase arginine-specific small chain, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cpa-1 PE=3 SV=2 Back     alignment and function description
>sp|Q2H132|CARA_CHAGB Carbamoyl-phosphate synthase arginine-specific small chain OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CPA1 PE=3 SV=1 Back     alignment and function description
>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r PE=1 SV=3 Back     alignment and function description
>sp|P87183|CARA_HYPVI Carbamoyl-phosphate synthase arginine-specific small chain OS=Hypocrea virens GN=cpa1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C9Y4|CARA_YARLI Carbamoyl-phosphate synthase arginine-specific small chain OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPA1 PE=3 SV=1 Back     alignment and function description
>sp|P07259|PYR1_YEAST Protein URA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=URA2 PE=1 SV=5 Back     alignment and function description
>sp|Q0U5H7|CARA_PHANO Carbamoyl-phosphate synthase arginine-specific small chain OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=CPA1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
91090153 2198 PREDICTED: similar to carbamoyl-phosphat 0.548 0.084 0.571 3e-64
440200915 979 carbamoylphosphate synthetase/aspartate 0.581 0.200 0.582 3e-63
157123307 1361 carbamoyl-phosphate synthase large chain 0.587 0.145 0.549 2e-62
440201449 972 carbamoylphosphate synthetase/aspartate 0.566 0.196 0.581 5e-62
440201431 979 carbamoylphosphate synthetase/aspartate 0.581 0.200 0.572 9e-62
345482220 1396 PREDICTED: CAD protein-like [Nasonia vit 0.590 0.142 0.566 2e-61
440200775 976 carbamoylphosphate synthetase/aspartate 0.575 0.198 0.552 7e-61
440201259 976 carbamoylphosphate synthetase/aspartate 0.575 0.198 0.567 1e-60
170041953 2213 carbamoyl-phosphate synthase large chain 0.584 0.089 0.546 2e-60
440201183 976 carbamoylphosphate synthetase/aspartate 0.560 0.193 0.555 2e-60
>gi|91090153|ref|XP_972190.1| PREDICTED: similar to carbamoyl-phosphate synthase large chain [Tribolium castaneum] gi|270013749|gb|EFA10197.1| hypothetical protein TcasGA2_TC012392 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 145/189 (76%), Gaps = 4/189 (2%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VFQTGMVGYPE++TDPSYH QILVLTYPL+GNYGVP   +D HG+  +FESHRIW +GL+
Sbjct: 36  VFQTGMVGYPESLTDPSYHAQILVLTYPLVGNYGVPKAVEDPHGLPYFFESHRIWAAGLV 95

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           VG+ CD PSHW++  TL +W+++ N+P +  +DTR LTK IRE G + G+IV+     L 
Sbjct: 96  VGEHCDNPSHWHNFRTLSDWMKSENVPGIQGIDTRALTKKIREKGTILGRIVYS----LP 151

Query: 124 VTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAKLSV 183
           +  E+L  VDPN  NLV++VS K++VTYN  GS  +C VDCGLKYNQ+RCL+ RGA++ +
Sbjct: 152 IVTENLKIVDPNLRNLVEEVSVKKIVTYNSGGSPRICAVDCGLKYNQIRCLVNRGARVDL 211

Query: 184 IPWNHPIKV 192
           +PW+H + +
Sbjct: 212 VPWDHKLNI 220

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|440200915|gb|AGB86264.1| carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase, partial [Dyseriocrania griseocapitella] Back     alignment and taxonomy information
>gi|157123307|ref|XP_001660108.1| carbamoyl-phosphate synthase large chain [Aedes aegypti] gi|108874420|gb|EAT38645.1| AAEL009490-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|440201449|gb|AGB86531.1| carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase, partial [Palaeomicra chalcophanes] Back     alignment and taxonomy information
>gi|440201431|gb|AGB86522.1| carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase, partial [Eriocraniidae gen. sp. Pacer] Back     alignment and taxonomy information
>gi|345482220|ref|XP_001606715.2| PREDICTED: CAD protein-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|440200775|gb|AGB86194.1| carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase, partial [Cecidoses eremita] Back     alignment and taxonomy information
>gi|440201259|gb|AGB86436.1| carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase, partial [Lophocorona astiptica] Back     alignment and taxonomy information
>gi|170041953|ref|XP_001848709.1| carbamoyl-phosphate synthase large chain [Culex quinquefasciatus] gi|167865521|gb|EDS28904.1| carbamoyl-phosphate synthase large chain [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|440201183|gb|AGB86398.1| carbamoylphosphate synthetase/aspartate transcarbamylase/dihydroorotase, partial [Heterobathmia pseuderiocrania] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
WB|WBGene00004259 2198 pyr-1 [Caenorhabditis elegans 0.593 0.090 0.473 6.5e-75
ZFIN|ZDB-GENE-081105-17 1482 cps1 "carbamoyl-phosphate synt 0.531 0.120 0.489 8.4e-74
UNIPROTKB|P31327 1500 CPS1 "Carbamoyl-phosphate synt 0.525 0.118 0.462 1.1e-67
UNIPROTKB|J3KQL0 1506 CPS1 "Carbamoyl-phosphate synt 0.525 0.117 0.462 1.1e-67
UNIPROTKB|F1SSS0 1458 CPS1 "Uncharacterized protein" 0.525 0.121 0.446 1.5e-67
UNIPROTKB|F1PJF3 1500 CPS1 "Uncharacterized protein" 0.525 0.118 0.446 3.5e-67
UNIPROTKB|F1MVC0 2225 CAD "Uncharacterized protein" 0.584 0.088 0.541 4.1e-67
UNIPROTKB|F1ML89 1500 CPS1 "Uncharacterized protein" 0.525 0.118 0.440 4.5e-67
MGI|MGI:891996 1500 Cps1 "carbamoyl-phosphate synt 0.525 0.118 0.435 9.6e-67
UNIPROTKB|F8VPD4 2162 CAD "CAD protein" [Homo sapien 0.584 0.091 0.532 2.1e-66
WB|WBGene00004259 pyr-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 475 (172.3 bits), Expect = 6.5e-75, Sum P(3) = 6.5e-75
 Identities = 99/209 (47%), Positives = 129/209 (61%)

Query:     4 VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQD-KDEHGILKYFESHRIWISGL 62
             VFQTGMVGY E++TDPSY +Q+L LTYPLIGNYGVP  +  D+  +   FES RIW + L
Sbjct:    29 VFQTGMVGYVESLTDPSYAKQLLTLTYPLIGNYGVPSAEILDQFKLPAEFESDRIWPAAL 88

Query:    63 IVGDMC--DTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVA 120
             IV  +C     SHW +  +L EWLR  ++P L+ +D R+L K IRE G +  K+V  S  
Sbjct:    89 IVEKICVDGEHSHWQAVQSLSEWLRKADVPCLSGIDVRQLVKKIRETGTMKAKLVIESD- 147

Query:   121 PLAVTVEDLVFVDPNRGNLVDQVSTKEVVTYNPTGSVHLCVVDCGLKYNQLRCLIQRGAK 180
                   ++  +VD N  NLVD VS KE V Y  +G   +  VDCGLK NQ+RCL +RG +
Sbjct:   148 ----NAQNFDYVDVNAENLVDFVSRKEPVVYG-SGDQTILAVDCGLKNNQIRCLAKRGFR 202

Query:   181 LSVIPWNHPIKVPQGWQPLFTNANDGTNE 209
             + V+PWNHPI     +  LF +   G  E
Sbjct:   203 VKVVPWNHPIDTESDYDGLFLSNGPGDPE 231
GO:0004070 "aspartate carbamoyltransferase activity" evidence=IEA
GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA
GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
GO:0006520 "cellular amino acid metabolic process" evidence=IEA
GO:0016597 "amino acid binding" evidence=IEA
GO:0016743 "carboxyl- or carbamoyltransferase activity" evidence=IEA
GO:0006543 "glutamine catabolic process" evidence=IEA
GO:0070409 "carbamoyl phosphate biosynthetic process" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008716 "D-alanine-D-alanine ligase activity" evidence=IEA
GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA
GO:0006541 "glutamine metabolic process" evidence=IEA
GO:0040010 "positive regulation of growth rate" evidence=IMP
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP
GO:0002119 "nematode larval development" evidence=IMP
GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP
GO:0040011 "locomotion" evidence=IMP
GO:0060465 "pharynx development" evidence=IMP
GO:0019856 "pyrimidine nucleobase biosynthetic process" evidence=IMP
ZFIN|ZDB-GENE-081105-17 cps1 "carbamoyl-phosphate synthase 1, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KQL0 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSS0 CPS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJF3 CPS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MVC0 CAD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1ML89 CPS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:891996 Cps1 "carbamoyl-phosphate synthetase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F8VPD4 CAD "CAD protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27708PYR1_HUMAN3, ., 5, ., 2, ., 30.53200.58450.0885yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.5LOW CONFIDENCE prediction!
3rd Layer6.3.5.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
COG0505368 COG0505, CarA, Carbamoylphosphate synthase small s 2e-71
PRK12564360 PRK12564, PRK12564, carbamoyl phosphate synthase s 1e-70
TIGR01368358 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt 6e-69
smart01097130 smart01097, CPSase_sm_chain, Carbamoyl-phosphate s 2e-58
PRK12838354 PRK12838, PRK12838, carbamoyl phosphate synthase s 3e-58
pfam00988131 pfam00988, CPSase_sm_chain, Carbamoyl-phosphate sy 2e-56
CHL00197382 CHL00197, carA, carbamoyl-phosphate synthase argin 1e-33
cd01744178 cd01744, GATase1_CPSase, Small chain of the glutam 3e-22
PLN02771415 PLN02771, PLN02771, carbamoyl-phosphate synthase ( 2e-20
TIGR01368358 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt 1e-17
COG0505368 COG0505, CarA, Carbamoylphosphate synthase small s 2e-17
PRK12564360 PRK12564, PRK12564, carbamoyl phosphate synthase s 2e-15
TIGR01369 1050 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth 5e-15
smart01096124 smart01096, CPSase_L_D3, Carbamoyl-phosphate synth 2e-14
pfam00117186 pfam00117, GATase, Glutamine amidotransferase clas 3e-14
pfam02787122 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthe 6e-14
PRK12838354 PRK12838, PRK12838, carbamoyl phosphate synthase s 7e-13
PRK05294 1066 PRK05294, carB, carbamoyl phosphate synthase large 1e-10
CHL00197382 CHL00197, carA, carbamoyl-phosphate synthase argin 1e-08
cd01744178 cd01744, GATase1_CPSase, Small chain of the glutam 3e-08
PRK12815 1068 PRK12815, carB, carbamoyl phosphate synthase large 2e-05
cd01742181 cd01742, GATase1_GMP_Synthase, Type 1 glutamine am 9e-05
PLN02735 1102 PLN02735, PLN02735, carbamoyl-phosphate synthase 3e-04
cd01745189 cd01745, GATase1_2, Subgroup of proteins having th 5e-04
COG2071243 COG2071, COG2071, Predicted glutamine amidotransfe 6e-04
PLN02771415 PLN02771, PLN02771, carbamoyl-phosphate synthase ( 0.001
>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information 
 Score =  225 bits (576), Expect = 2e-71
 Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 15/190 (7%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY  QI+  TYPLIGNYGV  +D         FES RI  +GL+
Sbjct: 30  VFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDED---------FESDRIHAAGLV 80

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           V ++ + PS+W +  +L E+L+   IP +A +DTR LT+ IRE G + G I  G     A
Sbjct: 81  VRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGPELDPA 140

Query: 124 VTVEDLV-FVDPNRGNLVDQVSTKEVVTYNPTGSV-----HLCVVDCGLKYNQLRCLIQR 177
             +E    F      +LV +VSTKE  T+           H+ V+D G+K N LR L++R
Sbjct: 141 KLLERARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVIDFGVKRNILRELVKR 200

Query: 178 GAKLSVIPWN 187
           G +++V+P +
Sbjct: 201 GCRVTVVPAD 210

Length = 368
>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit Back     alignment and domain information
>gnl|CDD|198165 smart01097, CPSase_sm_chain, Carbamoyl-phosphate synthase small chain, CPSase domain Back     alignment and domain information
>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>gnl|CDD|144543 pfam00988, CPSase_sm_chain, Carbamoyl-phosphate synthase small chain, CPSase domain Back     alignment and domain information
>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional Back     alignment and domain information
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II Back     alignment and domain information
>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit Back     alignment and domain information
>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>gnl|CDD|198164 smart01096, CPSase_L_D3, Carbamoyl-phosphate synthetase large chain, oligomerisation domain Back     alignment and domain information
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I Back     alignment and domain information
>gnl|CDD|217231 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large chain, oligomerisation domain Back     alignment and domain information
>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional Back     alignment and domain information
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II Back     alignment and domain information
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase Back     alignment and domain information
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase Back     alignment and domain information
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain Back     alignment and domain information
>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
COG0505368 CarA Carbamoylphosphate synthase small subunit [Am 100.0
KOG0370|consensus 1435 100.0
TIGR01368358 CPSaseIIsmall carbamoyl-phosphate synthase, small 100.0
CHL00197382 carA carbamoyl-phosphate synthase arginine-specifi 100.0
PRK12564360 carbamoyl phosphate synthase small subunit; Review 100.0
PLN02771415 carbamoyl-phosphate synthase (glutamine-hydrolyzin 100.0
PRK12838354 carbamoyl phosphate synthase small subunit; Review 100.0
PF00988131 CPSase_sm_chain: Carbamoyl-phosphate synthase smal 100.0
PF02787123 CPSase_L_D3: Carbamoyl-phosphate synthetase large 99.86
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.81
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.81
PLN02735 1102 carbamoyl-phosphate synthase 99.8
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.79
cd01744178 GATase1_CPSase Small chain of the glutamine-depend 99.6
COG0512191 PabA Anthranilate/para-aminobenzoate synthases com 99.5
PRK05670189 anthranilate synthase component II; Provisional 99.47
PLN02335222 anthranilate synthase 99.47
PRK09522 531 bifunctional glutamine amidotransferase/anthranila 99.46
PRK08007187 para-aminobenzoate synthase component II; Provisio 99.42
TIGR00566188 trpG_papA glutamine amidotransferase of anthranila 99.39
CHL00101190 trpG anthranilate synthase component 2 99.37
PLN02347 536 GMP synthetase 99.37
PRK07649195 para-aminobenzoate/anthranilate synthase glutamine 99.35
TIGR00888188 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N 99.34
PRK06774191 para-aminobenzoate synthase component II; Provisio 99.33
PRK14607 534 bifunctional glutamine amidotransferase/anthranila 99.32
PRK08857193 para-aminobenzoate synthase component II; Provisio 99.32
PRK00758184 GMP synthase subunit A; Validated 99.31
PRK05637208 anthranilate synthase component II; Provisional 99.3
PRK00074 511 guaA GMP synthase; Reviewed 99.28
cd01742181 GATase1_GMP_Synthase Type 1 glutamine amidotransfe 99.27
cd01743184 GATase1_Anthranilate_Synthase Type 1 glutamine ami 99.2
PRK13566720 anthranilate synthase; Provisional 99.19
TIGR01823 742 PabB-fungal aminodeoxychorismate synthase, fungal 99.14
PRK07765214 para-aminobenzoate synthase component II; Provisio 99.14
TIGR01815717 TrpE-clade3 anthranilate synthase, alpha proteobac 99.14
PRK06895190 putative anthranilate synthase component II; Provi 99.12
PF00117192 GATase: Glutamine amidotransferase class-I; InterP 99.03
PLN02889 918 oxo-acid-lyase/anthranilate synthase 99.0
PRK11366254 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; 99.0
cd01746235 GATase1_CTP_Synthase Type 1 glutamine amidotransfe 98.98
cd01745189 GATase1_2 Subgroup of proteins having the Type 1 g 98.91
COG2071243 Predicted glutamine amidotransferases [General fun 98.91
KOG0026|consensus223 98.9
TIGR00337525 PyrG CTP synthase. CTP synthase is involved in pyr 98.82
PRK13141205 hisH imidazole glycerol phosphate synthase subunit 98.78
PRK05380533 pyrG CTP synthetase; Validated 98.76
PRK06186229 hypothetical protein; Validated 98.71
KOG1622|consensus 552 98.7
PLN02327557 CTP synthase 98.59
COG0518198 GuaA GMP synthase - Glutamine amidotransferase dom 98.55
PRK13143200 hisH imidazole glycerol phosphate synthase subunit 98.55
cd01748198 GATase1_IGP_Synthase Type 1 glutamine amidotransfe 98.51
PRK13170196 hisH imidazole glycerol phosphate synthase subunit 98.42
PRK13152201 hisH imidazole glycerol phosphate synthase subunit 98.38
PLN02617 538 imidazole glycerol phosphate synthase hisHF 98.35
TIGR01855196 IMP_synth_hisH imidazole glycerol phosphate syntha 98.34
PRK13181199 hisH imidazole glycerol phosphate synthase subunit 98.31
TIGR01737227 FGAM_synth_I phosphoribosylformylglycinamidine syn 98.19
PF07722217 Peptidase_C26: Peptidase C26; InterPro: IPR011697 98.17
cd01747273 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot 98.06
PRK13525189 glutamine amidotransferase subunit PdxT; Provision 98.0
cd01741188 GATase1_1 Subgroup of proteins having the Type 1 g 97.91
PRK14004210 hisH imidazole glycerol phosphate synthase subunit 97.81
COG0504533 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide 97.78
PRK13527200 glutamine amidotransferase subunit PdxT; Provision 97.77
TIGR03800184 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl 97.72
KOG1224|consensus 767 97.67
PRK13146209 hisH imidazole glycerol phosphate synthase subunit 97.67
PRK09065237 glutamine amidotransferase; Provisional 97.64
CHL00188210 hisH imidazole glycerol phosphate synthase subunit 97.57
COG0118204 HisH Glutamine amidotransferase [Amino acid transp 97.52
PRK06490239 glutamine amidotransferase; Provisional 97.49
cd01749183 GATase1_PB Glutamine Amidotransferase (GATase_I) i 97.27
PRK07567242 glutamine amidotransferase; Provisional 97.22
PRK08250235 glutamine amidotransferase; Provisional 96.69
PRK03619219 phosphoribosylformylglycinamidine synthase I; Prov 96.68
PRK07053234 glutamine amidotransferase; Provisional 96.47
PRK05665240 amidotransferase; Provisional 96.4
PRK13142192 hisH imidazole glycerol phosphate synthase subunit 95.54
PLN02832248 glutamine amidotransferase subunit of pyridoxal 5' 94.3
KOG0623|consensus 541 93.48
KOG1559|consensus340 91.92
PRK05368302 homoserine O-succinyltransferase; Provisional 90.47
KOG2387|consensus585 87.14
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-91  Score=669.26  Aligned_cols=240  Identities=43%  Similarity=0.719  Sum_probs=220.2

Q ss_pred             cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128           2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG   81 (337)
Q Consensus         2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~   81 (337)
                      |||||||||||||+||||||.|||||||||||||||+|.+         ++||++|||+|+||||+|..|||||+.+||+
T Consensus        28 EvVFnTsMTGYqE~LTDPSY~gQIv~fTyP~IGNyGvn~~---------d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~   98 (368)
T COG0505          28 EVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDE---------DFESDRIHAAGLVVRELSERPSNWRATESLD   98 (368)
T ss_pred             EEEEeCCCCcccccccCCccCceEEEEeccccccccCCch---------hccccCceEEEEEEcccccccCccccccCHH
Confidence            9999999999999999999999999999999999999999         4899999999999999999999999999999


Q ss_pred             HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCC-----CC
Q psy1128          82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TG  155 (337)
Q Consensus        82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~-----~~  155 (337)
                      +||+++|||||+|||||+|||+||++|+|+|+|+++...+.+.+...+ .++++...|||++||++++|.|.+     ..
T Consensus        99 ~~Lk~~gipgI~GIDTRaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~  178 (368)
T COG0505          99 EYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEP  178 (368)
T ss_pred             HHHHHcCCCceecccHHHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCcccccceeecCCceeccccccCCCC
Confidence            999999999999999999999999999999999987521322222222 688999999999999999999863     23


Q ss_pred             CeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC---------------------------------------------
Q psy1128         156 SVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI---------------------------------------------  190 (337)
Q Consensus       156 ~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~---------------------------------------------  190 (337)
                      +++|+++|||+|+||||+|.+|||+|+||||++++                                             
T Consensus       179 ~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICL  258 (368)
T COG0505         179 GKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICL  258 (368)
T ss_pred             CcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcH
Confidence            57999999999999999999999999999999988                                             


Q ss_pred             -------------------------------------------------CCCCceeeEEEeCCCCceEEEeecCCcEEEE
Q psy1128         191 -------------------------------------------------KVPQGWQPLFTNANDGTNEGIVHESLPFFSV  221 (337)
Q Consensus       191 -------------------------------------------------sL~~~l~vt~~n~nDgtvEGi~h~~~pi~gV  221 (337)
                                                                       ++++..++||+|+||||+|||+|+++|+|||
T Consensus       259 GHQllalA~Ga~T~KmkFGHrG~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSV  338 (368)
T COG0505         259 GHQLLALALGAKTYKMKFGHRGANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSV  338 (368)
T ss_pred             HHHHHHHhcCCceeecccCCCCCCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEE
Confidence                                                             4544338999999999999999999999999


Q ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHhccC
Q psy1128         222 QFHPEHTAGPADLELLFDIFINAVRDSKT  250 (337)
Q Consensus       222 QfHPEa~pgp~d~~~lF~~Fi~~~~~~k~  250 (337)
                      ||||||+|||+|+.|||++|+++|++.+.
T Consensus       339 Q~HPEAsPGPhDt~ylFd~Fi~~~~~~~~  367 (368)
T COG0505         339 QYHPEASPGPHDTRYLFDEFIELMEAAKK  367 (368)
T ss_pred             ccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999997663

>KOG0370|consensus Back     alignment and domain information
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit Back     alignment and domain information
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional Back     alignment and domain information
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II Back     alignment and domain information
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK05670 anthranilate synthase component II; Provisional Back     alignment and domain information
>PLN02335 anthranilate synthase Back     alignment and domain information
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08007 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase Back     alignment and domain information
>CHL00101 trpG anthranilate synthase component 2 Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated Back     alignment and domain information
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit Back     alignment and domain information
>PRK06774 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08857 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK00758 GMP synthase subunit A; Validated Back     alignment and domain information
>PRK05637 anthranilate synthase component II; Provisional Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase Back     alignment and domain information
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase Back     alignment and domain information
>PRK13566 anthranilate synthase; Provisional Back     alignment and domain information
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade Back     alignment and domain information
>PRK07765 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade Back     alignment and domain information
>PRK06895 putative anthranilate synthase component II; Provisional Back     alignment and domain information
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] Back     alignment and domain information
>PLN02889 oxo-acid-lyase/anthranilate synthase Back     alignment and domain information
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional Back     alignment and domain information
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase Back     alignment and domain information
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain Back     alignment and domain information
>COG2071 Predicted glutamine amidotransferases [General function prediction only] Back     alignment and domain information
>KOG0026|consensus Back     alignment and domain information
>TIGR00337 PyrG CTP synthase Back     alignment and domain information
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PRK05380 pyrG CTP synthetase; Validated Back     alignment and domain information
>PRK06186 hypothetical protein; Validated Back     alignment and domain information
>KOG1622|consensus Back     alignment and domain information
>PLN02327 CTP synthase Back     alignment and domain information
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) Back     alignment and domain information
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PLN02617 imidazole glycerol phosphate synthase hisHF Back     alignment and domain information
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit Back     alignment and domain information
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I Back     alignment and domain information
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase Back     alignment and domain information
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional Back     alignment and domain information
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain Back     alignment and domain information
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional Back     alignment and domain information
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 Back     alignment and domain information
>KOG1224|consensus Back     alignment and domain information
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PRK09065 glutamine amidotransferase; Provisional Back     alignment and domain information
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional Back     alignment and domain information
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06490 glutamine amidotransferase; Provisional Back     alignment and domain information
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis Back     alignment and domain information
>PRK07567 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK08250 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional Back     alignment and domain information
>PRK07053 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK05665 amidotransferase; Provisional Back     alignment and domain information
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex Back     alignment and domain information
>KOG0623|consensus Back     alignment and domain information
>KOG1559|consensus Back     alignment and domain information
>PRK05368 homoserine O-succinyltransferase; Provisional Back     alignment and domain information
>KOG2387|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1c30_B382 Crystal Structure Of Carbamoyl Phosphate Synthetase 3e-26
1cs0_B382 Crystal Structure Of Carbamoyl Phosphate Synthetase 4e-26
1t36_B382 Crystal Structure Of E. Coli Carbamoyl Phosphate Sy 4e-26
1a9x_B379 Carbamoyl Phosphate Synthetase: Caught In The Act O 4e-26
1m6v_B382 Crystal Structure Of The G359f (Small Subunit) Poin 4e-26
1jdb_C382 Carbamoyl Phosphate Synthetase From Escherichia Col 4e-26
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D DE       ES ++   GL+
Sbjct: 31  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGT--NDADE-------ESSQVHAQGLV 81
Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 82  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 141
Query: 124 VTVEDL-VFVDPNRGNLVDQVSTKEVVTYNP-----TGSV-----------HLCVVDCGL 166
           + +E    F   N  +L  +V+T E  ++       TG +           H+   D G 
Sbjct: 142 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGA 201
Query: 167 KYNQLRCLIQRGAKLSVIP 185
           K N LR L+ RG +L+++P
Sbjct: 202 KRNILRMLVDRGCRLTIVP 220
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382 Back     alignment and structure
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382 Back     alignment and structure
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 379 Back     alignment and structure
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382 Back     alignment and structure
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1a9x_B379 Carbamoyl phosphate synthetase (small chain); amid 2e-61
1a9x_B379 Carbamoyl phosphate synthetase (small chain); amid 1e-14
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 3e-07
3fij_A254 LIN1909 protein; 11172J, uncharacterized protein, 1e-05
1l9x_A315 Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO 9e-05
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379 Back     alignment and structure
 Score =  199 bits (510), Expect = 2e-61
 Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 26/201 (12%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G    D          ES ++   GL+
Sbjct: 30  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDAD---------EESSQVHAQGLV 80

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 81  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 140

Query: 124 VTVEDLVFVDPNRG-NLVDQVSTKEVVTYN----------------PTGSVHLCVVDCGL 166
           + +E         G +L  +V+T E  ++                      H+   D G 
Sbjct: 141 LALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGA 200

Query: 167 KYNQLRCLIQRGAKLSVIPWN 187
           K N LR L+ RG +L+++P  
Sbjct: 201 KRNILRMLVDRGCRLTIVPAQ 221
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379 Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073 Back     alignment and structure
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 Back     alignment and structure
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1a9x_B379 Carbamoyl phosphate synthetase (small chain); amid 100.0
1s1m_A545 CTP synthase; CTP synthetase, UTP:ammonia ligase ( 99.92
1vco_A550 CTP synthetase; tetramer, riken structural genomic 99.89
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.76
3nva_A535 CTP synthase; rossman fold, nucleotide binding, LI 99.56
2vpi_A218 GMP synthase; guanine monophosphate synthetase, ph 99.4
1i1q_B192 Anthranilate synthase component II; tryptophan bio 99.39
2vxo_A 697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 99.28
3tqi_A 527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 99.28
4gud_A211 Imidazole glycerol phosphate synthase subunit His; 99.27
2ywb_A 503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 99.27
1wl8_A189 GMP synthase [glutamine-hydrolyzing] subunit A; tr 99.24
1gpm_A 525 GMP synthetase, XMP aminase; class I glutamine ami 99.24
2a9v_A212 GMP synthase; structural genomics, joint center fo 99.22
3r75_A645 Anthranilate/para-aminobenzoate synthases compone; 99.16
3uow_A 556 GMP synthetase; structural genomics consortium, SG 99.08
3fij_A254 LIN1909 protein; 11172J, uncharacterized protein, 98.94
1qdl_B195 Protein (anthranilate synthase (TRPG-SUBUNIT)); tr 98.89
2v4u_A289 CTP synthase 2; pyrimidine biosynthesis, glutamine 98.88
2w7t_A273 CTP synthetase, putative cytidine triphosphate syn 98.81
1l9x_A315 Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO 98.76
2ywj_A186 Glutamine amidotransferase subunit PDXT; uncharact 98.68
3d54_D213 Phosphoribosylformylglycinamidine synthase 1; alph 98.62
1gpw_B201 Amidotransferase HISH; lyase/transferase, complex 98.53
2nv0_A196 Glutamine amidotransferase subunit PDXT; 3-layer(A 98.35
2ywd_A191 Glutamine amidotransferase subunit PDXT; pyridoxin 98.3
1q7r_A219 Predicted amidotransferase; structural genomics, Y 98.24
2iss_D208 Glutamine amidotransferase subunit PDXT; (beta/alp 98.11
1o1y_A239 Conserved hypothetical protein TM1158; flavodoxin- 98.07
1ka9_H200 Imidazole glycerol phosphtate synthase; riken stru 98.02
2abw_A227 PDX2 protein, glutaminase; PLP-synthase, vitamin B 97.85
3l7n_A236 Putative uncharacterized protein; glutamine amidot 97.84
3m3p_A250 Glutamine amido transferase; structural genomics, 97.59
1jvn_A 555 Glutamine, bifunctional histidine biosynthesis pro 97.3
2vdj_A301 Homoserine O-succinyltransferase; methionine biosy 89.56
2h2w_A312 Homoserine O-succinyltransferase; TM0881, (EC 2.3. 88.75
2ahq_A76 Sigma-54, RNA polymerase sigma factor RPON; sigma- 87.89
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Back     alignment and structure
Probab=100.00  E-value=3.8e-81  Score=616.87  Aligned_cols=239  Identities=36%  Similarity=0.588  Sum_probs=219.2

Q ss_pred             cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128           2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG   81 (337)
Q Consensus         2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~   81 (337)
                      |||||||||||||+||||||+|||||||||||||||||++         ++||.+||++|+||||+|..|||||+++||+
T Consensus        28 Evvf~T~mtGYqe~ltDpsy~gqi~~~t~P~iGn~Gv~~~---------d~es~~~~~~g~vv~~~~~~~s~~~~~~~l~   98 (379)
T 1a9x_B           28 EVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDA---------DEESSQVHAQGLVIRDLPLIASNFRNTEDLS   98 (379)
T ss_dssp             EEEEECCSSCHHHHHTCGGGBTEEEEECSSBCCTTCCCGG---------GCSSSSCCBSEEECSBCCSCCCCTTCCSCHH
T ss_pred             EEEEeCCCCcCCccccCcccccceeEEcCCCccEEccCch---------hhccccceEEEEEEccCCCCCCcccccCCHH
Confidence            9999999999999999999999999999999999999998         4899999999999999999999999999999


Q ss_pred             HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhhhc-ccCCCCcCCccceeeecceEEeCCCC-----
Q psy1128          82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVEDL-VFVDPNRGNLVDQVSTKEVVTYNPTG-----  155 (337)
Q Consensus        82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~~~-~~~~~~~~~lv~~VS~~~~~~~~~~~-----  155 (337)
                      +||+++|||||+|||||||||+||++|+|+|+|++++..+.+++.+++ .++++++.|||++|||+++|.+.++.     
T Consensus        99 ~~l~~~~i~gi~giDTR~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vs~~~~~~~~~~~~~~~~  178 (379)
T 1a9x_B           99 SYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTG  178 (379)
T ss_dssp             HHHHHTTCEEEESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHHHHHHCCCSTTCBCHHHHSCSSCEEECCCCCBTTT
T ss_pred             HHHHHCCCccccCCCHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccccCccceeCCCCCEEeCCCCccccc
Confidence            999999999999999999999999999999999985222444444334 68889999999999999999985432     


Q ss_pred             -----------CeeEEEEecCCcchHHHHHHHCCCEEEEecCCCCC----------------------------------
Q psy1128         156 -----------SVHLCVVDCGLKYNQLRCLIQRGAKLSVIPWNHPI----------------------------------  190 (337)
Q Consensus       156 -----------~~~I~viDfGiK~~ilr~L~~~G~~v~vvP~~~~~----------------------------------  190 (337)
                                 +.||+++|||.|+||+|.|.++||+++|+|+++++                                  
T Consensus       179 ~~~~~~~~~~~~~~V~viD~G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~  258 (379)
T 1a9x_B          179 GLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFL  258 (379)
T ss_dssp             BSCCCCCGGGCCEEEEEEESSCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHT
T ss_pred             ccccccccccCCCEEEEEECCChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHH
Confidence                       46999999999999999999999999999998653                                  


Q ss_pred             ------------------------------------------------------------CCCCceeeEEEeCCCCceEE
Q psy1128         191 ------------------------------------------------------------KVPQGWQPLFTNANDGTNEG  210 (337)
Q Consensus       191 ------------------------------------------------------------sL~~~l~vt~~n~nDgtvEG  210 (337)
                                                                                  +||+++++++++++|+++||
T Consensus       259 ~~~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~~~~g~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~iea  338 (379)
T 1a9x_B          259 ETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQG  338 (379)
T ss_dssp             TSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEE
T ss_pred             HcCCCEEEECchHHHHHHHhCcEEEecccccccCceeeEecCCCcEEEEecCccceEecccCCCCeEEEEEeCCCCcEEE
Confidence                                                                        38889999999999999999


Q ss_pred             EeecCCcEEEEccCCCCCCCCcCHHHHHHHHHHHHHhcc
Q psy1128         211 IVHESLPFFSVQFHPEHTAGPADLELLFDIFINAVRDSK  249 (337)
Q Consensus       211 i~h~~~pi~gVQfHPEa~pgp~d~~~lF~~Fi~~~~~~k  249 (337)
                      |+|+++|+||||||||+.++|+|+.+||++|+++++++|
T Consensus       339 i~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~~  377 (379)
T 1a9x_B          339 IHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQYR  377 (379)
T ss_dssp             EEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHHHHH
T ss_pred             EEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999997654
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Back     alignment and structure
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Back     alignment and structure
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Back     alignment and structure
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Back     alignment and structure
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Back     alignment and structure
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A Back     alignment and structure
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Back     alignment and structure
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Back     alignment and structure
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} Back     alignment and structure
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B Back     alignment and structure
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Back     alignment and structure
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Back     alignment and structure
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Back     alignment and structure
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Back     alignment and structure
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Back     alignment and structure
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Back     alignment and structure
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Back     alignment and structure
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Back     alignment and structure
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Back     alignment and structure
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A Back     alignment and structure
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} Back     alignment and structure
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1a9xb1151 c.8.3.1 (B:1502-1652) Carbamoyl phosphate syntheta 1e-29
d1a9xb2228 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe 1e-14
d1a9xb2228 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe 3e-05
d1qdlb_195 c.23.16.1 (B:) Anthranilate synthase GAT subunit, 1e-10
d1a9xa1153 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetas 1e-10
d2a9va1196 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA 8e-08
d1wl8a1188 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA 3e-07
d1i7qb_192 c.23.16.1 (B:) Anthranilate synthase GAT subunit, 8e-07
d1gpma2205 c.23.16.1 (A:3-207) GMP synthetase {Escherichia co 2e-05
d1gpma2205 c.23.16.1 (A:3-207) GMP synthetase {Escherichia co 7e-04
d1s1ma1258 c.23.16.1 (A:287-544) CTP synthase PyrG, C-termina 8e-05
d1l9xa_288 c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho 9e-05
d1vcoa1250 c.23.16.1 (A:298-547) CTP synthase PyrG, C-termina 0.002
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]} Length = 151 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain
family: Carbamoyl phosphate synthetase, small subunit N-terminal domain
domain: Carbamoyl phosphate synthetase, small subunit N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (272), Expect = 1e-29
 Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 4   VFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLI 63
           VF T M GY E +TDPSY +QI+ LTYP IGN G               ES ++   GL+
Sbjct: 30  VFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTND---------ADEESSQVHAQGLV 80

Query: 64  VGDMCDTPSHWNSASTLGEWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLA 123
           + D+    S++ +   L  +L+ HNI A+A++DTR+LT+ +RE G  +G I+ G     A
Sbjct: 81  IRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAA 140

Query: 124 VTVE 127
           + +E
Sbjct: 141 LALE 144
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195 Back     information, alignment and structure
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]} Length = 153 Back     information, alignment and structure
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 Back     information, alignment and structure
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188 Back     information, alignment and structure
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 Back     information, alignment and structure
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 Back     information, alignment and structure
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 Back     information, alignment and structure
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 258 Back     information, alignment and structure
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1a9xb1151 Carbamoyl phosphate synthetase, small subunit N-te 100.0
d1a9xb2228 Carbamoyl phosphate synthetase, small subunit C-te 99.96
d1a9xa1153 Carbamoyl phosphate synthetase, large subunit conn 99.9
d1wl8a1188 GMP synthase subunit A, GuaAA {Archaeon Pyrococcus 99.71
d2a9va1196 GMP synthase subunit A, GuaAA {Archaeon Thermoplas 99.7
d1gpma2205 GMP synthetase {Escherichia coli [TaxId: 562]} 99.62
d1i7qb_192 Anthranilate synthase GAT subunit, TrpG {Serratia 99.54
d1qdlb_195 Anthranilate synthase GAT subunit, TrpG {Archaeon 99.51
d1ka9h_195 GAT subunit, HisH, (or domain) of imidazoleglycero 98.92
d2nv0a1195 Hypothetical protein YaaE {Bacillus subtilis [TaxI 98.63
d1q7ra_202 Hypothetical protein YaaE {Bacillus stearothermoph 98.57
d1jvna2232 GAT subunit, HisH, (or domain) of imidazoleglycero 98.4
d1k9vf_200 GAT subunit, HisH, (or domain) of imidazoleglycero 98.38
d1s1ma1258 CTP synthase PyrG, C-terminal domain {Escherichia 98.3
d1l9xa_288 gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta 98.13
d1vcoa1250 CTP synthase PyrG, C-terminal domain {Thermus ther 98.06
d2abwa1218 Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p 97.95
d1o1ya_230 Hypothetical protein TM1158 {Thermotoga maritima [ 97.7
d2ghra1281 Homoserine O-succinyltransferase HTS (MetA) {Bacil 80.06
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: Carbamoyl phosphate synthetase, small subunit N-terminal domain
family: Carbamoyl phosphate synthetase, small subunit N-terminal domain
domain: Carbamoyl phosphate synthetase, small subunit N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.8e-59  Score=402.34  Aligned_cols=117  Identities=41%  Similarity=0.675  Sum_probs=109.5

Q ss_pred             cEEEecCCCCccccccCccccCeEeeecccceeeecCCCCCcccccccccccccCceEEEEEecccCCCCCCcCCcCCHH
Q psy1128           2 RYVFQTGMVGYPEAMTDPSYHQQILVLTYPLIGNYGVPPQDKDEHGILKYFESHRIWISGLIVGDMCDTPSHWNSASTLG   81 (337)
Q Consensus         2 EvVFnT~MtGYqE~lTDPSy~gQiv~~TyP~IGNyGi~~~d~~~~~~~~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sl~   81 (337)
                      |||||||||||||+||||||+||||+||||||||||+|.+         ++||.+||++|+||||+|..|||||++.+|+
T Consensus        28 E~vFnT~mtGYqE~lTDPSY~gQii~fT~P~IGNyG~n~~---------d~ES~~~~~~GlIV~e~~~~pSn~rs~~sL~   98 (151)
T d1a9xb1          28 EVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDA---------DEESSQVHAQGLVIRDLPLIASNFRNTEDLS   98 (151)
T ss_dssp             EEEEECCSSCHHHHHTCGGGBTEEEEECSSBCCTTCCCGG---------GCSSSSCCBSEEECSBCCSCCCCTTCCSCHH
T ss_pred             EEEEEecccchhhhccCCCccCceEEeeehhcccccCCcc---------chhhccccccchhccCccccCCcccccCCHH
Confidence            9999999999999999999999999999999999999998         5899999999999999999999999999999


Q ss_pred             HHHHHCCCCeEeccchHHHHHHHHhcCceeEEEEeCCCCChhhhhh
Q psy1128          82 EWLRAHNIPALANVDTRRLTKHIRECGVVSGKIVHGSVAPLAVTVE  127 (337)
Q Consensus        82 ~~L~~~~ipgi~gvDTRaLt~~iR~~G~~~g~i~~~~~~~~~~~~~  127 (337)
                      +||+++|||||+|||||||||+||++|+|+|+|+..+..+.+.+.+
T Consensus        99 ~~L~~~~IpgI~gIDTRaLtr~iR~~G~~~g~I~~~~~~d~~~~~~  144 (151)
T d1a9xb1          99 SYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALE  144 (151)
T ss_dssp             HHHHHTTCEEEESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHH
T ss_pred             HHHHHcCCccccccCHHHHHHHHHhcCCceEEEecCCCCCHHHHHH
Confidence            9999999999999999999999999999999998755434444443
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure