Psyllid ID: psy11330

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
MAADNVWTQLYNTLQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGAGKVERGACKDMTKKNSSYPVVNSSTEDMIQVGEKDGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
cccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEcccccccEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEccHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEcHHHHHHHHHHHcHcHHHHHHHHHHccccEEcccccccccccccccEEccccccEEEEcccccccccccEEcccccccccEEEHHcccEccccccccccccccccccccEEccEEEHcccccccccccEcccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEcHHHHHHcc
MAADNVWTQLYNTLQALVWLIDDACEIIDLtmnsatntagisisiiqpktsildkpintkvkhdISINLYALLFSELVQYCQnkslsvpeFQSKLHEVGQSIGAKlidinfyrekngkREIKLLNILQFVKINLWKnifgkecdklerandderTYYLIEQESLVNKFisvpkdkgslncAIFVAGIVEAVLNncgfkstvTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWrrgagkvergackdmtkknssypvvnssteDMIQVgekdgaksgnsavdpsvQTFCRSVSAANVGYHEYLMDAlgkeplggIISWLVLFQIIDLTmnsatntagisisiiqpktsildkpintkvkhdISINLYALLFSELVQYCQnkslsvpeFQSKLHEVGQSIGAKlidinfyrekngkREIKLLNILQFVKINLWKnifgkecdklerandderTYYLIEQESLVNKFisvpkdkgslncAIFVAGIVEAVLNncgfkstvTAHWHKGTTYMIQFDEQVIARDK
MAADNVWTQLYNTLQALVWLIDDACEIIDLTMNSatntagisisiiqpktsildKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIasqwrrgaGKVErgackdmtkknssypvvnssTEDMIQVGEKDGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGisisiiqpktsildKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
MAADNVWTQLYNTLQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGAGKVERGACKDMTKKNSSYPVVNSSTEDMIQVGEKDGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
****NVWTQLYNTLQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRG************************************************VQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI****
****NVWTQLYNTLQALVWLIDD*********************************************LYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTAL*************************************************************************************************************************************************LYALLFSELVQYCQNKSLSVP*FQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV*****SLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIAR**
MAADNVWTQLYNTLQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGAGKVERGACKDMTKKNSSYPVVNSSTEDMIQVGEK**********DPSVQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
*AADNVWTQLYNTLQALVWLIDDACEIIDLTMNS**********************INTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGAGKVERG**********SYPVVNSSTEDMIQVGEKDGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGISI****PKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIAR**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAADNVWTQLYNTLQALVWLIDDACEIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQLQIMEENIASQWRRGAGKVERGACKDMTKKNSSYPVVNSSTEDMIQVGEKDGAKSGNSAVDPSVQTFCRSVSAANVGYHEYLMDALGKEPLGGIISWLVLFQIIDLTMNSATNTAGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
Q5F359188 Trafficking protein parti yes N/A 0.332 0.930 0.556 3e-56
Q8IUR0188 Trafficking protein parti yes N/A 0.332 0.930 0.545 2e-55
Q9CQA1188 Trafficking protein parti yes N/A 0.332 0.930 0.539 4e-55
Q2NL13188 Trafficking protein parti yes N/A 0.332 0.930 0.534 8e-55
Q54YG5186 Trafficking protein parti yes N/A 0.325 0.919 0.430 4e-36
Q9P7N9209 Transport protein particl yes N/A 0.330 0.832 0.361 1e-31
P15847184 Trafficking protein parti yes N/A 0.330 0.945 0.407 2e-27
Q7KQM2184 Trafficking protein parti yes N/A 0.330 0.945 0.407 2e-27
Q03337283 Trafficking protein parti yes N/A 0.205 0.381 0.338 2e-12
Q8SU25155 Putative trafficking prot yes N/A 0.254 0.864 0.251 2e-08
>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1 Back     alignment and function desciption
 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 136/176 (77%), Gaps = 1/176 (0%)

Query: 351 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 410
           K+ +L++P+  + + ++S++ +ALLF ELVQYCQ +  SV E QSKL ++G  +G +L+D
Sbjct: 9   KSPLLERPLG-RPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLD 67

Query: 411 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 470
               RE+ G+RE K+L++L FVK  +W+ +FGKE DKLE+ANDD++TYY+IE+E LVN F
Sbjct: 68  PLVSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTF 127

Query: 471 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 526
           ISVP++  +LNCA F AG+VEAVL   GF + VTAHWHKGTT MI+F+E VIARDK
Sbjct: 128 ISVPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWHKGTTLMIKFEEGVIARDK 183
May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Gallus gallus (taxid: 9031)
>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1 Back     alignment and function description
>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1 Back     alignment and function description
>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1 Back     alignment and function description
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1 Back     alignment and function description
>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1 Back     alignment and function description
>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1 Back     alignment and function description
>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1 Back     alignment and function description
>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
307175097191 Trafficking protein particle complex sub 0.351 0.968 0.672 5e-70
156540774191 PREDICTED: trafficking protein particle 0.351 0.968 0.677 6e-70
307202732191 Trafficking protein particle complex sub 0.351 0.968 0.661 2e-69
332029998191 Trafficking protein particle complex sub 0.351 0.968 0.661 4e-69
350412173191 PREDICTED: trafficking protein particle 0.347 0.958 0.657 7e-68
340727793191 PREDICTED: trafficking protein particle 0.347 0.958 0.657 7e-68
328776484191 PREDICTED: trafficking protein particle 0.347 0.958 0.657 1e-67
270015732187 hypothetical protein TcasGA2_TC002333 [T 0.332 0.935 0.670 2e-67
189242249190 PREDICTED: similar to conserved hypothet 0.332 0.921 0.670 2e-67
389610191186 similar to CG10153 [Papilio xuthus] 0.344 0.973 0.675 3e-67
>gi|307175097|gb|EFN65239.1| Trafficking protein particle complex subunit 5 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 125/186 (67%), Positives = 158/186 (84%), Gaps = 1/186 (0%)

Query: 341 AGISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEV 400
           + I+IS I+P+TSILDK + +K K ++S++ +ALLFSELVQYCQN+  +VPE Q+KL E+
Sbjct: 2   SSITISAIRPRTSILDKSL-SKGKGEVSLSCFALLFSELVQYCQNRVYTVPELQNKLAEM 60

Query: 401 GQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL 460
           G  +G ++ D+   REKNGKREIKLLN+L FVK  +WK++FG+E DKLE ANDDERTYY+
Sbjct: 61  GAEVGHRITDLLVMREKNGKREIKLLNVLLFVKSTMWKSLFGREADKLEHANDDERTYYI 120

Query: 461 IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 520
           IE+ESLVNKF+SVPKDKGSLNCA FVAGIVEAVL +CGF + VTAHWHKGTTYM++FD+ 
Sbjct: 121 IEKESLVNKFVSVPKDKGSLNCASFVAGIVEAVLCDCGFPAKVTAHWHKGTTYMVKFDDA 180

Query: 521 VIARDK 526
           V+ARDK
Sbjct: 181 VVARDK 186

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156540774|ref|XP_001599248.1| PREDICTED: trafficking protein particle complex subunit 5-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307202732|gb|EFN82023.1| Trafficking protein particle complex subunit 5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332029998|gb|EGI69823.1| Trafficking protein particle complex subunit 5 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350412173|ref|XP_003489563.1| PREDICTED: trafficking protein particle complex subunit 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340727793|ref|XP_003402220.1| PREDICTED: trafficking protein particle complex subunit 5-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328776484|ref|XP_395045.2| PREDICTED: trafficking protein particle complex subunit 5-like [Apis mellifera] Back     alignment and taxonomy information
>gi|270015732|gb|EFA12180.1| hypothetical protein TcasGA2_TC002333 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189242249|ref|XP_973092.2| PREDICTED: similar to conserved hypothetical protein, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|389610191|dbj|BAM18707.1| similar to CG10153 [Papilio xuthus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
ZFIN|ZDB-GENE-040718-185188 trappc5 "trafficking protein p 0.347 0.973 0.565 1.6e-56
UNIPROTKB|Q5F359188 TRAPPC5 "Trafficking protein p 0.332 0.930 0.556 1.3e-50
UNIPROTKB|Q8IUR0188 TRAPPC5 "Trafficking protein p 0.332 0.930 0.545 2.5e-49
UNIPROTKB|F1MSD6188 TRAPPC5 "Trafficking protein p 0.332 0.930 0.539 5.2e-49
UNIPROTKB|E2RBU4188 TRAPPC5 "Uncharacterized prote 0.332 0.930 0.539 5.2e-49
UNIPROTKB|F1SCJ1188 TRAPPC5 "Uncharacterized prote 0.332 0.930 0.539 5.2e-49
MGI|MGI:1913932188 Trappc5 "trafficking protein p 0.332 0.930 0.539 5.2e-49
RGD|1563971188 Trappc5 "trafficking protein p 0.332 0.930 0.539 5.2e-49
WB|WBGene00013259185 Y57A10A.16 [Caenorhabditis ele 0.328 0.935 0.551 8.5e-49
UNIPROTKB|Q9NA81185 Y57A10A.16 "Protein Y57A10A.16 0.328 0.935 0.551 8.5e-49
ZFIN|ZDB-GENE-040718-185 trappc5 "trafficking protein particle complex 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 104/184 (56%), Positives = 146/184 (79%)

Query:   343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 402
             + +   + K++IL++ + T+ K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ
Sbjct:     1 MEVRFTRGKSAILERSL-TRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59

Query:   403 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 462
              +GA L+D+   REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct:    60 GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119

Query:   463 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 522
             +E L+N +ISVPK+  +LNCA F  GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct:   120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179

Query:   523 ARDK 526
             ARDK
Sbjct:   180 ARDK 183
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|Q5F359 TRAPPC5 "Trafficking protein particle complex subunit 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IUR0 TRAPPC5 "Trafficking protein particle complex subunit 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSD6 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBU4 TRAPPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCJ1 TRAPPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913932 Trappc5 "trafficking protein particle complex 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1563971 Trappc5 "trafficking protein particle complex 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00013259 Y57A10A.16 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NA81 Y57A10A.16 "Protein Y57A10A.16" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2NL13TPPC5_BOVINNo assigned EC number0.53400.33260.9308yesN/A
Q8IUR0TPPC5_HUMANNo assigned EC number0.54540.33260.9308yesN/A
Q9CQA1TPPC5_MOUSENo assigned EC number0.53970.33260.9308yesN/A
Q5F359TPPC5_CHICKNo assigned EC number0.55680.33260.9308yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
PTZ00391168 PTZ00391, PTZ00391, transport protein particle com 2e-45
pfam04051148 pfam04051, TRAPP, Transport protein particle (TRAP 8e-45
pfam04051148 pfam04051, TRAPP, Transport protein particle (TRAP 8e-45
PTZ00391168 PTZ00391, PTZ00391, transport protein particle com 3e-42
COG5128208 COG5128, COG5128, Transport protein particle (TRAP 1e-39
COG5128208 COG5128, COG5128, Transport protein particle (TRAP 8e-37
>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional Back     alignment and domain information 
 Score =  156 bits (397), Expect = 2e-45
 Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 7/166 (4%)

Query: 367 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 426
           +S++ +A LFSE+VQYC +KS      + KLHE+G  +G KL ++  YREKN KRE K+L
Sbjct: 1   VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60

Query: 427 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 486
           +IL F+  ++WK +FG   D L ++ D +  Y + ++  L+NKFISVPKD G +NCA F 
Sbjct: 61  SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119

Query: 487 AGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVIARDK 526
           AGIVE +L +  F + VTAH       +  TT +I+F  +VI R+K
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPEVIEREK 165

Length = 168
>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component Back     alignment and domain information
>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component Back     alignment and domain information
>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional Back     alignment and domain information
>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
PTZ00391168 transport protein particle component (TRAPP) super 100.0
KOG3315|consensus191 100.0
KOG3315|consensus191 100.0
PTZ00391168 transport protein particle component (TRAPP) super 100.0
PF04051152 TRAPP: Transport protein particle (TRAPP) componen 100.0
COG5128208 Transport protein particle (TRAPP) complex subunit 100.0
PF04051152 TRAPP: Transport protein particle (TRAPP) componen 100.0
COG5128208 Transport protein particle (TRAPP) complex subunit 100.0
KOG3316|consensus163 100.0
KOG3316|consensus163 100.0
KOG3330|consensus183 99.97
KOG3330|consensus183 99.96
COG1719158 Predicted hydrocarbon binding protein (contains V4 86.37
COG1719158 Predicted hydrocarbon binding protein (contains V4 82.84
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-53  Score=397.95  Aligned_cols=159  Identities=47%  Similarity=0.790  Sum_probs=153.9

Q ss_pred             chHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCCccc
Q psy11330        367 ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECD  446 (526)
Q Consensus       367 VS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGKqaD  446 (526)
                      ||+|+|+|||+|||+|+++++++++|+++||+++||+||.||+|++..|++..+|+++++|+|+|||+++|+.+||||+|
T Consensus         1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD   80 (168)
T PTZ00391          1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD   80 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence            79999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             ccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEe------cCceEEEEEechh
Q psy11330        447 KLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQ  520 (526)
Q Consensus       447 ~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~------~~~t~f~IKf~~~  520 (526)
                      +| +++||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+||||+      +.+|+|+|||+++
T Consensus        81 ~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~  159 (168)
T PTZ00391         81 LL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPE  159 (168)
T ss_pred             hh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHH
Confidence            99 4567999999999999999999999999999999999999999999999999999998      4699999999999


Q ss_pred             hhhccC
Q psy11330        521 VIARDK  526 (526)
Q Consensus       521 v~~Re~  526 (526)
                      |++||+
T Consensus       160 v~~Re~  165 (168)
T PTZ00391        160 VIEREK  165 (168)
T ss_pred             HHHHHh
Confidence            999996

>KOG3315|consensus Back     alignment and domain information
>KOG3315|consensus Back     alignment and domain information
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional Back     alignment and domain information
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment Back     alignment and domain information
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment Back     alignment and domain information
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3316|consensus Back     alignment and domain information
>KOG3316|consensus Back     alignment and domain information
>KOG3330|consensus Back     alignment and domain information
>KOG3330|consensus Back     alignment and domain information
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only] Back     alignment and domain information
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
2j3w_B188 The Crystal Structure Of The Bet3-Trs31-Sedlin Comp 2e-62
2j3r_B157 The Crystal Structure Of The Bet3-Trs31 Heterodimer 1e-56
2j3r_B157 The Crystal Structure Of The Bet3-Trs31 Heterodimer 1e-56
3cue_B283 Crystal Structure Of A Trapp Subassembly Activating 2e-13
>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 188 Back     alignment and structure 
Iteration: 1

 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 104/184 (56%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Query: 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 402
           + +   + K++IL++ + T+ K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ
Sbjct: 1   MEVRFTRGKSAILERSL-TRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59
Query: 403 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 462
            +GA L+D+   REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60  GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119
Query: 463 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 522
           +E L+N +ISVPK+  +LNCA F  GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179
Query: 523 ARDK 526
           ARDK
Sbjct: 180 ARDK 183
>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157 Back     alignment and structure
>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157 Back     alignment and structure
>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 283 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
2j3w_B188 ZGC 92866, trafficking protein particle complex pr 5e-67
2j3w_B188 ZGC 92866, trafficking protein particle complex pr 4e-63
3cue_B283 Transport protein particle 31 kDa subunit; membran 4e-45
3cue_B283 Transport protein particle 31 kDa subunit; membran 3e-42
1sz7_A200 BET3 homolog, trafficking protein particle complex 6e-43
1sz7_A200 BET3 homolog, trafficking protein particle complex 5e-42
2bjn_A160 TPC6, trafficking protein particle complex subunit 5e-37
2bjn_A160 TPC6, trafficking protein particle complex subunit 5e-37
2c0j_B160 R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens 7e-34
2c0j_B160 R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens 7e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3cue_D193 Transport protein particle 22 kDa subunit; membran 1e-04
3cue_D193 Transport protein particle 22 kDa subunit; membran 1e-04
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188 Back     alignment and structure
 Score =  213 bits (544), Expect = 5e-67
 Identities = 103/184 (55%), Positives = 145/184 (78%), Gaps = 1/184 (0%)

Query: 343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQ 402
           + +   + K++IL++ +  + K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ
Sbjct: 1   MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQ 59

Query: 403 SIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIE 462
            +GA L+D+   REKNGKRE K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE
Sbjct: 60  GVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIE 119

Query: 463 QESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVI 522
           +E L+N +ISVPK+  +LNCA F  GIVEA+L + GF + VT HWHKGTT MI+FDE VI
Sbjct: 120 KEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVI 179

Query: 523 ARDK 526
           ARDK
Sbjct: 180 ARDK 183
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188 Back     alignment and structure
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283 Back     alignment and structure
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283 Back     alignment and structure
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200 Back     alignment and structure
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200 Back     alignment and structure
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160 Back     alignment and structure
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160 Back     alignment and structure
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160 Back     alignment and structure
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193 Back     alignment and structure
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
2j3w_B188 ZGC 92866, trafficking protein particle complex pr 100.0
2j3w_B188 ZGC 92866, trafficking protein particle complex pr 100.0
3cue_B283 Transport protein particle 31 kDa subunit; membran 100.0
3cue_B283 Transport protein particle 31 kDa subunit; membran 100.0
1sz7_A200 BET3 homolog, trafficking protein particle complex 100.0
2c0j_B160 R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens 100.0
2c0j_B160 R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens 100.0
1sz7_A200 BET3 homolog, trafficking protein particle complex 100.0
3cue_D193 Transport protein particle 22 kDa subunit; membran 100.0
2bjn_A160 TPC6, trafficking protein particle complex subunit 100.0
2bjn_A160 TPC6, trafficking protein particle complex subunit 100.0
3cue_D193 Transport protein particle 22 kDa subunit; membran 100.0
2oso_A163 Hypothetical protein MJ1460; structural genomics, 83.26
2oso_A163 Hypothetical protein MJ1460; structural genomics, 82.17
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Back     alignment and structure
Probab=100.00  E-value=4.8e-58  Score=438.09  Aligned_cols=183  Identities=56%  Similarity=1.017  Sum_probs=159.6

Q ss_pred             ccccccCCCCccccccccccCcccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCc
Q psy11330        343 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE  422 (526)
Q Consensus       343 ~~~~~~~~~~~i~dr~l~~~~~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~  422 (526)
                      |..+.+++..+|+||||+ |++++||+|+|+|||+|||+|++++.++++|++++||+|||+||.||+|++++|++..+||
T Consensus         1 ~~~~~~~~~~~i~~~~l~-~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~   79 (188)
T 2j3w_B            1 MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRE   79 (188)
T ss_dssp             ---------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             CCcccCCCCCccccCccc-cchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCccc
Confidence            345567888899999999 8899999999999999999999999999999999999999999999999999999766999


Q ss_pred             CcHHHHHHHHHHHHHHhhhCCcccccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceE
Q psy11330        423 IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKST  502 (526)
Q Consensus       423 ~d~LdiLkFIck~~Wk~lFGKqaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~  502 (526)
                      ++++|+++||||++||++||||+|+|+++|||+|+|||+|+||++++|||+|+++++++|++|+||||||||+++||+|+
T Consensus        80 ~d~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~  159 (188)
T 2j3w_B           80 TKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAK  159 (188)
T ss_dssp             CSHHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCceEEEEEechhhhhccC
Q psy11330        503 VTAHWHKGTTYMIQFDEQVIARDK  526 (526)
Q Consensus       503 VTA~~~~~t~f~IKf~~~v~~Re~  526 (526)
                      ||||++|+|+|+|||+++|++||+
T Consensus       160 Vta~~~~~t~f~Ikf~~~v~~re~  183 (188)
T 2j3w_B          160 VTVHWHKGTTLMIKFDESVIARDK  183 (188)
T ss_dssp             EEEEESSSEEEEEEECHHHHHHHH
T ss_pred             EEEEeCCCEEEEEEecHHHHHHHH
Confidence            999999999999999999999985
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Back     alignment and structure
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Back     alignment and structure
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Back     alignment and structure
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Back     alignment and structure
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Back     alignment and structure
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Back     alignment and structure
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Back     alignment and structure
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A* Back     alignment and structure
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 526
d2j3wb1168 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki 1e-62
d2j3wb1168 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki 9e-59
d1wc9a_161 d.278.1.2 (A:) Trafficking protein particle comple 3e-37
d1wc9a_161 d.278.1.2 (A:) Trafficking protein particle comple 7e-37
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  200 bits (510), Expect = 1e-62
 Identities = 100/163 (61%), Positives = 133/163 (81%)

Query: 364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 423
           K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ +GA L+D+   REKNGKRE 
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 424 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 483
           K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 484 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 526
            F  GIVEA+L + GF + VT HWHKGTT MI+FDE VIARDK
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDK 163
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168 Back     information, alignment and structure
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161 Back     information, alignment and structure
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d2j3wb1168 TRAPPC5, similar to trafficking protein particle c 100.0
d2j3wb1168 TRAPPC5, similar to trafficking protein particle c 100.0
d1wc9a_161 Trafficking protein particle complex subunit 3, Be 100.0
d1wc9a_161 Trafficking protein particle complex subunit 3, Be 100.0
d2osoa1152 Hypothetical protein MJ1460 {Methanococcus jannasc 91.42
d2osoa1152 Hypothetical protein MJ1460 {Methanococcus jannasc 91.25
d1u55a_188 Methyl-accepting chemotaxis protein {Thermoanaerob 83.63
d1u55a_188 Methyl-accepting chemotaxis protein {Thermoanaerob 80.78
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=2.7e-54  Score=403.24  Aligned_cols=163  Identities=61%  Similarity=1.080  Sum_probs=159.5

Q ss_pred             cccchHHHHHHHHHHHHHHHHHccCChhHHHHHHHHhhhhhHHHHHHHHhhhccCCcCcCcHHHHHHHHHHHHHHhhhCC
Q psy11330        364 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK  443 (526)
Q Consensus       364 ~~eVS~s~Fa~Lf~EiV~y~~~~~~~~~eve~kLe~mGy~VG~RLiE~l~~R~k~~~R~~d~LdiLkFIck~~Wk~lFGK  443 (526)
                      |++||+|+|+|||+|||+|+++++++++|++++|++|||+||.||+|++++|++..+||++++|+++||||++|+++|||
T Consensus         1 k~~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk   80 (168)
T d2j3wb1           1 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGK   80 (168)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSS
T ss_pred             CchhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCc
Confidence            57999999999999999999999999999999999999999999999999998878999999999999999999999999


Q ss_pred             cccccccccCCCCEEEEEcCCcccccceeccCCCCCcccchhhHHHHHHHHhhCCCceEEEEEecCceEEEEEechhhhh
Q psy11330        444 ECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIA  523 (526)
Q Consensus       444 qaD~Le~stn~~g~YvI~DnnPl~~~fVS~P~e~~~L~y~af~cGIIRGAL~slGf~a~VTA~~~~~t~f~IKf~~~v~~  523 (526)
                      |+|+|+++++|+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||||++++|+|+|||+++|++
T Consensus        81 ~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~~~~~~f~ikf~~~v~~  160 (168)
T d2j3wb1          81 EADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIA  160 (168)
T ss_dssp             CCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEESSSEEEEEEECHHHHH
T ss_pred             CcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEeeCCCeEEEEEccHHHHH
Confidence            99999988899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy11330        524 RDK  526 (526)
Q Consensus       524 Re~  526 (526)
                      ||+
T Consensus       161 Re~  163 (168)
T d2j3wb1         161 RDK  163 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            995
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]} Back     information, alignment and structure
>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]} Back     information, alignment and structure