Psyllid ID: psy11365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MSYDGPVHNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEEEccEEEEEEEccccccEEEccccccccccHHHHHHHHHHHHHccEEEEcEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEccccccccccEEEEEEEEEcEEEEEEEcccccccEEEccccccccccHHHHHHHHHHHHHcccEEHHHEEcEEEcccccc
Coil and Loop (DISEMBL)
msydgpvhnhglchvdsvrrcptMALFITTACVMSTLILLVTssrrpehwivpgggvepeeepAATALREVAEEAGVLGKLGrslgvfevrpkvp
Flexible Loop (DISEMBL)
msydgpvhnhglchvdsVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGklgrslgvfevrpkvp
Low Complexity Region (SEG)
MSYDGPVHNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIvpgggvepeeepAATALREVAEEAGVLGKLGRSLGVFEVRPKVP
Disordered region (IsUnstruct)
*******HNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPG*********************GVLGKLGRSLGVF*******
Disordered Region (DISOPRED)
*********HGLC*VDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP***
Disordered Region (DISEMBL)
MSYDGPVHNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP
Disordered Region (DISPRO)
****GP****GLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSYDGPVHNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q5RAF0	180	Diphosphoinositol polypho	yes	N/A	0.589	0.311	0.678	9e-16
Q9NZJ9	180	Diphosphoinositol polypho	yes	N/A	0.589	0.311	0.678	9e-16
Q99MY2	179	Diphosphoinositol polypho	yes	N/A	0.589	0.312	0.696	1e-15
Q8R2U6	179	Diphosphoinositol polypho	yes	N/A	0.589	0.312	0.678	1e-15
Q96G61	164	Diphosphoinositol polypho	no	N/A	0.547	0.317	0.75	2e-15
Q8NFP7	164	Diphosphoinositol polypho	no	N/A	0.547	0.317	0.75	2e-15
P0C028	164	Diphosphoinositol polypho	no	N/A	0.547	0.317	0.75	3e-15
P0C027	164	Diphosphoinositol polypho	no	N/A	0.547	0.317	0.75	3e-15
O95989	172	Diphosphoinositol polypho	no	N/A	0.589	0.325	0.642	7e-15
Q566C7	168	Diphosphoinositol polypho	no	N/A	0.589	0.333	0.642	1e-14

>sp|Q5RAF0|NUDT4_PONAB Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Pongo abelii GN=NUDT4 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 46/56 (82%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LG+FE + +
Sbjct: 34 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDR 89

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), PP-InsP4 and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphate Ap6A, but not Ap5A. The major reaction products are ADP and p4a from Ap6A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9NZJ9|NUDT4_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Homo sapiens GN=NUDT4 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 46/56 (82%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LG+FE + +
Sbjct: 34 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDR 89

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), PP-InsP4 and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphate Ap6A, but not Ap5A. The major reaction products are ADP and p4a from Ap6A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q99MY2|NUDT4_RAT Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Rattus norvegicus GN=Nudt4 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 45/56 (80%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WIVPGGGVEPEEEP   A REV EEAGV GKLGR LG+FE + +
Sbjct: 33 VLLVSSSRYPDQWIVPGGGVEPEEEPGGAAAREVYEEAGVKGKLGRLLGIFENQDR 88

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), PP-InsP4 and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphate Ap6A, but not Ap5A. The major reaction products are ADP and p4a from Ap6A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R2U6|NUDT4_MOUSE Diphosphoinositol polyphosphate phosphohydrolase 2 OS=Mus musculus GN=Nudt4 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 46/56 (82%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LG+FE + +
Sbjct: 33 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDR 88

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), PP-InsP4 and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphate Ap6A, but not Ap5A. The major reaction products are ADP and p4a from Ap6A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q96G61|NUD11_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 3-beta OS=Homo sapiens GN=NUDT11 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LGVFE
Sbjct: 33 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 84

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q8NFP7|NUD10_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 3-alpha OS=Homo sapiens GN=NUDT10 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LGVFE
Sbjct: 33 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 84

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P0C028|NUD11_MOUSE Diphosphoinositol polyphosphate phosphohydrolase 3-beta OS=Mus musculus GN=Nudt11 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LGVFE
Sbjct: 33 VLLVSSSRYPDRWIVPGGGMEPEEEPDGAAVREVYEEAGVKGKLGRLLGVFE 84

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate; however, the relevance of such activity in vivo remains unclear.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P0C027|NUD10_MOUSE Diphosphoinositol polyphosphate phosphohydrolase 3-alpha OS=Mus musculus GN=Nudt10 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV+SSR P+ WIVPGGG+EPEEEP   A+REV EEAGV GKLGR LGVFE
Sbjct: 33 VLLVSSSRYPDRWIVPGGGMEPEEEPDGAAVREVYEEAGVKGKLGRLLGVFE 84

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate), suggesting that it may play a role in signal transduction. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate; however, the relevance of such activity in vivo remains unclear.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O95989|NUDT3_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens GN=NUDT3 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WIVPGGG+EPEEEP+  A+REV EEAGV G LGR +G+FE + +
Sbjct: 34 VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER 89

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q566C7|NUDT3_RAT Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Rattus norvegicus GN=Nudt3 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WIVPGGG+EPEEEP+  A+REV EEAGV G LGR +G+FE + +
Sbjct: 34 VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER 89

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
322800070	210	hypothetical protein SINV_07265 [Solenop	0.621	0.280	0.790	3e-18
91079328	149	PREDICTED: similar to AGAP009901-PA [Tri	0.610	0.389	0.803	5e-18
357625062	154	hypothetical protein KGM_15106 [Danaus p	0.631	0.389	0.761	6e-18
242004616	152	Diphosphoinositol polyphosphate phosphoh	0.547	0.342	0.865	7e-18
340728429	183	PREDICTED: diphosphoinositol polyphospha	0.610	0.316	0.770	1e-17
48105111	183	PREDICTED: diphosphoinositol polyphospha	0.610	0.316	0.770	1e-17
380026828	183	PREDICTED: diphosphoinositol polyphospha	0.610	0.316	0.770	1e-17
383853692	183	PREDICTED: diphosphoinositol polyphospha	0.610	0.316	0.770	1e-17
345490799	190	PREDICTED: diphosphoinositol polyphospha	0.610	0.305	0.770	1e-17
350413841	183	PREDICTED: diphosphoinositol polyphospha	0.610	0.316	0.770	2e-17

>gi|322800070|gb|EFZ21176.1| hypothetical protein SINV_07265 [Solenopsis invicta]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 52/62 (83%), Gaps = 3/62 (4%)

Query: 32  CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
           CV S L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG+LGR LG F
Sbjct: 47  CVKSDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGQLGRCLGTF 106

Query: 89  EV 90
           EV
Sbjct: 107 EV 108

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079328|ref|XP_968347.1| PREDICTED: similar to AGAP009901-PA [Tribolium castaneum] gi|270004340|gb|EFA00788.1| hypothetical protein TcasGA2_TC003674 [Tribolium castaneum]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 32 CVMS---TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV S   T +LLVTSSRRPE WIVPGGGVEPEEEP+ TA REV EEAGV+GKLGRSLGVF
Sbjct: 25 CVRSDAETEVLLVTSSRRPEKWIVPGGGVEPEEEPSVTATREVLEEAGVIGKLGRSLGVF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625062|gb|EHJ75615.1| hypothetical protein KGM_15106 [Danaus plexippus]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 54/63 (85%), Gaps = 3/63 (4%)

Query: 32 CVMS---TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV S   T +LLVTSSRRP++WIVPGGGVEPEEEP+ TA+REV EEAGV+GKLGR LGVF
Sbjct: 25 CVRSDAETEVLLVTSSRRPDNWIVPGGGVEPEEEPSVTAMREVLEEAGVIGKLGRCLGVF 84

Query: 89 EVR 91
          E R
Sbjct: 85 ENR 87

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004616|ref|XP_002423176.1| Diphosphoinositol polyphosphate phosphohydrolase, putative [Pediculus humanus corporis] gi|212506141|gb|EEB10438.1| Diphosphoinositol polyphosphate phosphohydrolase, putative [Pediculus humanus corporis]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/52 (86%), Positives = 49/52 (94%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLVTSSRRPEHWIVPGGGVEPEEE + TA+REV EEAGVLG+LGRSLGVFE
Sbjct: 34 VLLVTSSRRPEHWIVPGGGVEPEEEASVTAIREVLEEAGVLGQLGRSLGVFE 85

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728429|ref|XP_003402527.1| PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1-like [Bombus terrestris]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 32 CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV + L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG+LGR LG+F
Sbjct: 25 CVKNDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGQLGRCLGIF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48105111|ref|XP_392996.1| PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1 [Apis mellifera]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 32 CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV + L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG+LGR LG+F
Sbjct: 25 CVKNDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGQLGRCLGIF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026828|ref|XP_003697142.1| PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1-like [Apis florea]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 32 CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV + L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG+LGR LG+F
Sbjct: 25 CVKNDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGQLGRCLGIF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853692|ref|XP_003702356.1| PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1-like [Megachile rotundata]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 32 CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV + L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG+LGR LG+F
Sbjct: 25 CVKNDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGQLGRCLGIF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490799|ref|XP_001601441.2| PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1-like [Nasonia vitripennis]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 3/61 (4%)

Query: 32 CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV + L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG+LGR LG+F
Sbjct: 25 CVKNDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGQLGRCLGIF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413841|ref|XP_003490130.1| PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1-like [Bombus impatiens]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 51/61 (83%), Gaps = 3/61 (4%)

Query: 32 CVMSTL---ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          CV + L   +LLVTSSRRP+ WIVPGGGVEPEEEPA TALREV EEAGVLG LGR LG+F
Sbjct: 25 CVKNDLEDEVLLVTSSRRPDSWIVPGGGVEPEEEPAVTALREVREEAGVLGHLGRCLGIF 84

Query: 89 E 89
          E
Sbjct: 85 E 85

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0036111	177	Aps "Aps" [Drosophila melanoga	0.547	0.293	0.596	6.6e-10
ZFIN|ZDB-GENE-040912-79	178	nudt4b "nudix (nucleoside diph	0.547	0.292	0.538	3.3e-08
UNIPROTKB|Q8NFP7	164	NUDT10 "Diphosphoinositol poly	0.547	0.317	0.538	5.3e-08
UNIPROTKB|Q96G61	164	NUDT11 "Diphosphoinositol poly	0.547	0.317	0.538	5.3e-08
UNIPROTKB|F1SQ13	181	NUDT4 "Uncharacterized protein	0.547	0.287	0.538	5.3e-08
UNIPROTKB|F1P121	182	NUDT4 "Uncharacterized protein	0.547	0.285	0.519	6.8e-08
UNIPROTKB|A7MBH2	164	NUDT11 "Uncharacterized protei	0.547	0.317	0.519	6.8e-08
UNIPROTKB|E2QX42	164	NUDT11 "Uncharacterized protei	0.547	0.317	0.519	6.8e-08
UNIPROTKB|J9NW66	180	NUDT4 "Uncharacterized protein	0.547	0.288	0.519	6.8e-08
UNIPROTKB|Q9NZJ9	180	NUDT4 "Diphosphoinositol polyp	0.547	0.288	0.519	6.8e-08

FB|FBgn0036111 Aps "Aps" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 31/52 (59%), Positives = 35/52 (67%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLVTSSRRPE WI            + TA+REV EEAGV+G LGR LGVFE
Sbjct:    34 VLLVTSSRRPELWIVPGGGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFE 85

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=ISS;IDA

GO:0009117 "nucleotide metabolic process" evidence=IDA

GO:0043647 "inositol phosphate metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-040912-79 nudt4b "nudix (nucleoside diphosphate linked moiety X)-type motif 4b" [Danio rerio (taxid:7955)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 28/52 (53%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LGVFE
Sbjct:    33 VLLVSSSRNPDQWIVPGGGMEPEEEPCGAAVREVYEEAGVKGKLGRLLGVFE 84

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8NFP7 NUDT10 "Diphosphoinositol polyphosphate phosphohydrolase 3-alpha" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 28/52 (53%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LGVFE
Sbjct:    33 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 84

GO:0046872 "metal ion binding" evidence=IEA

GO:0052840 "inositol diphosphate tetrakisphosphate diphosphatase activity" evidence=IEA

GO:0052843 "inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052844 "inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052845 "inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052846 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity" evidence=IEA

GO:0052847 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0052848 "inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=ISS

UNIPROTKB|Q96G61 NUDT11 "Diphosphoinositol polyphosphate phosphohydrolase 3-beta" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 28/52 (53%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LGVFE
Sbjct:    33 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 84

GO:0046872 "metal ion binding" evidence=IEA

GO:0052840 "inositol diphosphate tetrakisphosphate diphosphatase activity" evidence=IEA

GO:0052843 "inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052844 "inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052845 "inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052846 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity" evidence=IEA

GO:0052847 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0052848 "inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=ISS

GO:0005622 "intracellular" evidence=IDA

UNIPROTKB|F1SQ13 NUDT4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 28/52 (53%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LGVFE
Sbjct:    34 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 85

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

UNIPROTKB|F1P121 NUDT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/52 (51%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE
Sbjct:    36 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFE 87

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|A7MBH2 NUDT11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/52 (51%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE
Sbjct:    33 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVFEEAGVKGKLGRLLGIFE 84

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2QX42 NUDT11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/52 (51%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE
Sbjct:    33 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFE 84

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|J9NW66 NUDT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/52 (51%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE
Sbjct:    34 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFE 85

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9NZJ9 NUDT4 "Diphosphoinositol polyphosphate phosphohydrolase 2" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/52 (51%), Positives = 32/52 (61%)

Query:    38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
             +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE
Sbjct:    34 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFE 85

GO:0046872 "metal ion binding" evidence=IEA

GO:0052840 "inositol diphosphate tetrakisphosphate diphosphatase activity" evidence=IEA

GO:0052843 "inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052844 "inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052845 "inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity" evidence=IEA

GO:0052846 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity" evidence=IEA

GO:0052847 "inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0052848 "inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005622 "intracellular" evidence=TAS

GO:0019935 "cyclic-nucleotide-mediated signaling" evidence=TAS

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IDA

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0046831 "regulation of RNA export from nucleus" evidence=TAS

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0009187 "cyclic nucleotide metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NZJ9	NUDT4_HUMAN	3, ., 6, ., 1, ., -	0.6785	0.5894	0.3111	yes	N/A
Q99MY2	NUDT4_RAT	3, ., 6, ., 1, ., -	0.6964	0.5894	0.3128	yes	N/A
Q8R2U6	NUDT4_MOUSE	3, ., 6, ., 1, ., -	0.6785	0.5894	0.3128	yes	N/A
Q5RAF0	NUDT4_PONAB	3, ., 6, ., 1, ., -	0.6785	0.5894	0.3111	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	4e-18
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	5e-11
pfam00293	133	pfam00293, NUDIX, NUDIX domain	9e-11
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	1e-09
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	1e-08
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	1e-08
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-08
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	2e-08
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	3e-08
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-07
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	4e-07
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	2e-06
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	3e-06
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	4e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	5e-06
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	5e-06
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	8e-06
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	9e-06
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	9e-06
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	1e-05
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	1e-05
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	2e-05
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	2e-05
cd04688	126	cd04688, Nudix_Hydrolase_29, Members of the Nudix	3e-05
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	5e-05
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	5e-05
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	7e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	2e-04
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	2e-04
cd03670	186	cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase	3e-04
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	3e-04
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	4e-04
cd04663	126	cd04663, Nudix_Hydrolase_6, Members of the Nudix h	4e-04
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	5e-04
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	8e-04
cd04689	125	cd04689, Nudix_Hydrolase_30, Members of the Nudix	0.001
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	0.002
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	0.003
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	0.003
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	0.004

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 72.6 bits (179), Expect = 4e-18
 Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG-RSLGVFE 89
          +LLVTS R    WIVP GG E +E PA  A RE  EEAGV GK+G R LG FE
Sbjct: 17 VLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFE 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.4 bits (131), Expect = 5e-11
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 38 ILLV-TSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV 94
          +LLV  +      W +PGGGVEP E     A+REV EE G+   + R LGV+EV    
Sbjct: 14 VLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPD 71

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 54.0 bits (130), Expect = 9e-11
 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 38 ILLVTSSRRPEH---WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV  SR P     W +PGG VEP E P   A+RE+ EE G+   L   LGV E
Sbjct: 16 VLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLGVLE 70

Length = 133

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 20 RCPTMALFITTACVMSTLILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGV 77
          R P +A+      V +  ILLV  +  P   +W +PGG VE  E     A RE+ EE G+
Sbjct: 7  RTPLVAVGA--LIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL 64

Query: 78 LGKLGRSLGVFE 89
            ++   L VF+
Sbjct: 65 RVRVLELLAVFD 76

Length = 145

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query: 50 WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
          W  PGG VE  E     ALRE+ EE G+  ++GR L V +V  +  
Sbjct: 27 WSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDA 72

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 46 RPEHWIVPGGGVEPEEEPAATALREVAEEAGVL 78
           P+ W  PGGGVEP E P   A RE+ EE G+ 
Sbjct: 26 GPDWWFTPGGGVEPGESPEQAARRELREETGIT 58

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLG 86
          +LL+   R  + W +P G +EP E P   A+REV EE G+  ++G  LG
Sbjct: 18 VLLIHRPRGDD-WSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLG 65

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 38 ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
          +LL+  +  P    W +PGGG+EP E P     REV EE G+  ++GR LG     
Sbjct: 13 LLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRY 68

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 36 TLILLVTSSRRPEHWIVPGGGVEPEEEPA-ATALREVAEEAGVLGKLGRSLGVFEVRP 92
            +LL         W +PGG VEP EE     A RE+ EE G+  K  R   + E  P
Sbjct: 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPP 81

Length = 161

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
          LL+ +S    HW  P G VEP E+    ALRE  EE G+
Sbjct: 20 LLLQASYG--HWDFPKGHVEPGEDDLEAALRETEEETGI 56

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 50 WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          W +PGG VEP E PA TA+REV EE G+  ++   +G++
Sbjct: 27 WALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIY 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
          +LLV  +  P  W +PGGG+E  E  A  A RE+ EE G+
Sbjct: 14 VLLVRHTYGP-GWYLPGGGLERGETFAEAARRELLEELGI 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG-VLGKLGRSLGVF-EVRP 92
           ILL+  ++R   +  PGGGVE  E+     +RE+ EE G    ++    G + E RP
Sbjct: 12 KILLL-YTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRP 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 47 PEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
          P  W  P GG++  E+P   ALRE+ EE G+
Sbjct: 26 PGAWQFPQGGIDEGEDPEQAALRELEEETGL 56

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 47 PEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
          P HW +PGG  E  E P    LRE+ EE G+
Sbjct: 28 PGHWDLPGGHREGGETPLECVLRELLEEIGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90
          +L+T  R+   W+ PGG ++P+E     ALRE+ EE G +  LG       V
Sbjct: 17 VLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETG-IELLGLRPLSVLV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.9 bits (96), Expect = 8e-06
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV   R PE  HW +PGG V+  E      +RE+ EE G+     R L V +
Sbjct: 16 LLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVD 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.9 bits (96), Expect = 9e-06
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 49 HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
           +I+PGGG EP E     A RE  EE G+  ++G  L V E     P
Sbjct: 26 WYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNP 72

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.8 bits (96), Expect = 9e-06
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 50 WIVPGGGVEPEEEPAATALREVAEEAGV 77
          W +PGG V+P E+    A+REV EE G+
Sbjct: 29 WKLPGGLVDPGEDIFDGAVREVLEETGI 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV-LGKLG-RSLGVFEVR 91
          +L+   R  + + +PGG +E  E P    +RE++EE G+ L       LG F   
Sbjct: 14 VLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAP 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG 79
          LL  S +    W    GG+E  E PA  A REVAEE G+  
Sbjct: 19 LLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDP 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 38 ILLVTSSRRPEH-WIVPGGGVEPEEEPAATALREVAEEAGV 77
          ILL+   +  +  ++ PGGG+E  E P   A RE  EE G+
Sbjct: 14 ILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 50 WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          W  PGG VEP E     A REV EE G        +G ++V   
Sbjct: 23 WEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLF 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
          LLV  +     +  PGGG+E  E      +RE  EE G+  ++ R LGV E  
Sbjct: 14 LLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENI 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 50 WIVPGGGVEPEEEPAATALREVAEEAG 76
          W +PGG +E  E    TA RE+ EE G
Sbjct: 32 WGLPGGAMELGESLEETARRELKEETG 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          ILLV   +    W +PGG  +    PA   ++EV EE G+  K+ +   V +
Sbjct: 15 ILLV-REKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDD 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 38.6 bits (91), Expect = 7e-05
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 52 VPGGGVEPEEEPAATALREVAEEAG 76
          +P G ++P E+P   A RE+ EE G
Sbjct: 33 LPAGLIDPGEDPEEAARRELEEETG 57

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 36 TLILLVTSSR-------RPEH---WIVPGGGVEPEEEPAATALREVAEEAGV 77
          TL  +    +       +      W  PGG VEP E P   A+RE+ EE G+
Sbjct: 4  TLCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGL 55

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 38 ILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
          ILL   +RRPE       W  PGG VEP E       RE+ EE G+
Sbjct: 19 ILL---ARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGI 61

Length = 312

>gnl|CDD|239642 cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 38 ILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEA 75
          IL   + +RP    W +PGG V+P E+ +AT  RE  EEA
Sbjct: 48 ILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEA 87

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer. Length = 186

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 53 PGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          PGG VEP E     A+REV EE G + K    +G +EV  +
Sbjct: 50 PGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGE 90

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 47 PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
          P  W + GGGVEP E       RE+ EE      LG  L + E+ P
Sbjct: 30 PGQWALSGGGVEPGERIEEALRREIREE------LGEQLLLTEITP 69

Length = 141

>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 52 VPGGGVEPEEEPAATALREVAEEAGVLGKLG-RSLGVFEVR 91
          +  G VEP E P A ALRE+ EE+G+   L    L V+E R
Sbjct: 28 IVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERR 68

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 8/37 (21%)

Query: 53 PGGGVEPEEE-PAATALREVAEEAG-------VLGKL 81
          PGG V+P +E P ATALRE  EE G       VLG+L
Sbjct: 37 PGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRL 73

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 29 TTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          T  C     +LLV   +    W +PGG +EP E P   A RE+ EE G+ G     L   
Sbjct: 4  TVICRRGGRVLLV--RKSGSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHV 61

Query: 89 EVRPKVP 95
          +      
Sbjct: 62 DGGSTRH 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240045 cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATAL-REVAEEAGVLGKLGRSLGVFE 89
          +L+       H+ +PGG VEP  E A  AL RE+ EE GV    GR LG  E
Sbjct: 14 VLLARVIGQPHYFLPGGHVEP-GETAENALRRELQEELGVAVSDGRFLGAIE 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 27  FITT--ACVMSTLILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGV 77
           F+T     V S  +LLV     P    W +PGG +E +E      LRE+ EE G+
Sbjct: 203 FVTVDAVVVQSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGL 257

Length = 340

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 38 ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          +LLV     P+   W +P G VE  E P   A+RE  EE G+  +  + LG +
Sbjct: 27 VLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTY 79

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 46 RPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
           P+ W    G +E  E PA TA+REV EE G+
Sbjct: 29 DPDFWQSVTGSLEEGETPAQTAIREVKEETGI 60

Length = 148

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 33.6 bits (78), Expect = 0.004
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 45 RRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
          +RP        W  PGG VEP E P    +RE+ EE G+
Sbjct: 19 QRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGI 57

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.86
PLN02325	144	nudix hydrolase	99.82
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.8
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.79
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.79
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.78
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.78
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.78
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.78
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.78
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.78
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.78
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.77
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.77
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.77
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.77
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.77
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.76
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.76
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.76
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.75
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.75
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.75
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.75
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.75
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.75
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.74
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.74
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.74
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.74
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.74
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.74
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.73
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.72
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.72
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.72
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.72
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.71
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.71
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.71
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.71
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.71
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.71
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.7
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.7
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.7
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.69
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.69
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.69
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.68
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.68
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.68
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.67
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.67
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.66
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.65
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.65
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.65
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.64
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.64
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.63
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.63
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.62
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.62
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.6
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.59
PRK10707	190	putative NUDIX hydrolase; Provisional	99.58
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.57
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.56
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.55
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.53
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.53
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.52
PRK08999	312	hypothetical protein; Provisional	99.5
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.48
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.48
PLN02709	222	nudix hydrolase	99.47
KOG3084|consensus	345		99.46
KOG2839|consensus	145		99.46
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.41
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.37
PLN02791	770	Nudix hydrolase homolog	99.28
PLN03143	291	nudix hydrolase; Provisional	99.28
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.27
KOG3041|consensus	225		99.13
KOG3069|consensus	246		98.92
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.82
KOG0648|consensus	295		98.76
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.54
PLN02839	372	nudix hydrolase	98.43
KOG4195|consensus	275		98.29
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.2
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.09
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.36
KOG2937|consensus	348		97.27
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.36
KOG1689|consensus	221		96.22
KOG4313|consensus	306		95.12
KOG4432|consensus	405		95.04
PRK10880	350	adenine DNA glycosylase; Provisional	94.92
KOG4548|consensus	263		93.88
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	92.53
KOG0142|consensus	225		90.08
PRK13910	289	DNA glycosylase MutY; Provisional	89.19
PF14443	126	DBC1: DBC1	84.99
PF03487	43	IL13: Interleukin-13; InterPro: IPR020470 Interleu	83.12

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.86  E-value=1.9e-21  Score=124.17  Aligned_cols=74  Identities=32%  Similarity=0.421  Sum_probs=66.3

Q ss_pred             CceeEEEEEEEEcCCEEEEEEEeCCC--CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCCC
Q psy11365         22 PTMALFITTACVMSTLILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP   95 (95)
Q Consensus        22 ~~~~~~~~~~~~~~~~vll~~r~~~~--g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~p   95 (95)
                      ....+.+.+++..++++||+||+..|  |.|.+|||+++.|||+++||.||++||||+++...+++++++.+.|||
T Consensus         7 ~~p~~~v~~~i~~~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~   82 (145)
T COG1051           7 RTPLVAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDP   82 (145)
T ss_pred             CCcceeeeEEEEeCCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCC
Confidence            34556677777788899999998765  789999999999999999999999999999999999999999999885

>PLN02325 nudix hydrolase

Probab=99.82  E-value=1.4e-19  Score=115.14  Aligned_cols=72  Identities=24%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      ++...+.+.+++.+++++||+||...  .|.|.+|||+++.|||+.+||+||++||||+.+...++++++++..
T Consensus         5 ~~~p~~~v~~vi~~~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~   78 (144)
T PLN02325          5 EPIPRVAVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVF   78 (144)
T ss_pred             CCCCeEEEEEEEEcCCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEeccee
Confidence            44556677777788889999998753  3799999999999999999999999999999999899888876543

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.80  E-value=1.5e-19  Score=111.34  Aligned_cols=63  Identities=33%  Similarity=0.570  Sum_probs=54.7

Q ss_pred             EEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         28 ITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+++.+++++||++|++.  ++.|.||||+++.|||+.+||.||++||||+.+....+++.+..
T Consensus         3 ~~~ii~~~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~   67 (128)
T cd04684           3 AYAVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASR   67 (128)
T ss_pred             eEEEEEeCCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEE
Confidence            4556667899999999764  58999999999999999999999999999999888887777654

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1e-18  Score=107.97  Aligned_cols=67  Identities=30%  Similarity=0.365  Sum_probs=55.8

Q ss_pred             EEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         26 LFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        26 ~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      +.+.+++++ ++++||++|...  +|.|.||||++++|||+.+||+||++||||+.+...++++.+.+..
T Consensus         3 ~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~   72 (125)
T cd04679           3 VGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHII   72 (125)
T ss_pred             eEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecc
Confidence            345555555 589999998753  4899999999999999999999999999999998888888776543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.79  E-value=1e-18  Score=111.15  Aligned_cols=65  Identities=26%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec--eeEEEEe
Q psy11365         25 ALFITTACVM-STLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG--RSLGVFE   89 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~--~~~~~~~   89 (95)
                      .+.+.+++.+ ++++||+||..  .+|.|.||||+++.|||+.+||+||++||||+.+...  ++++.++
T Consensus        12 ~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~   81 (144)
T cd03430          12 LVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFE   81 (144)
T ss_pred             eEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEE
Confidence            4566666666 58999999865  3589999999999999999999999999999998766  7777665

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.5e-18  Score=107.25  Aligned_cols=64  Identities=34%  Similarity=0.460  Sum_probs=55.7

Q ss_pred             EEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         26 LFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+.+++.+++++||+++. ..+.|.+|||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus         2 ~~~~~vi~~~~~vLlv~~~-~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~   65 (125)
T cd04689           2 LRARAIVRAGNKVLLARVI-GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIEN   65 (125)
T ss_pred             eEEEEEEEeCCEEEEEEec-CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEee
Confidence            4566677788999999985 457999999999999999999999999999999888888887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1e-18  Score=106.90  Aligned_cols=65  Identities=34%  Similarity=0.509  Sum_probs=54.4

Q ss_pred             EEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         28 ITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      +.+++.+++++||++|.+.  ++.|.||||++++|||+.+||.||++||||+.+....+++.++...
T Consensus         3 v~~ii~~~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   69 (122)
T cd04673           3 VGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIE   69 (122)
T ss_pred             EEEEEEECCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEee
Confidence            4455667789999998753  4789999999999999999999999999999988777777765543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.9e-18  Score=106.89  Aligned_cols=70  Identities=26%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             CceeEEEEEEEEcCCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         22 PTMALFITTACVMSTLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        22 ~~~~~~~~~~~~~~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      +.....+.+++.+++++||++|..  ..|.|.+|||+++.|||+.+||.||++||||+++....+++++..+
T Consensus        10 ~~~~~~v~~ii~~~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~   81 (130)
T cd04511          10 QNPKIIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP   81 (130)
T ss_pred             CCCcEEEEEEEecCCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC
Confidence            344556666677789999999865  3479999999999999999999999999999998877777776654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.6e-18  Score=107.07  Aligned_cols=62  Identities=26%  Similarity=0.421  Sum_probs=52.2

Q ss_pred             EEEEEcC-CEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         29 TTACVMS-TLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        29 ~~~~~~~-~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .++++++ +++||++|... .+.|.||||+++.|||+.+||+||++||||+++...++++.+.+
T Consensus         4 ~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~   67 (121)
T cd04669           4 SIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ   67 (121)
T ss_pred             EEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee
Confidence            3444454 89999998653 36899999999999999999999999999999987777777665

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2e-18  Score=106.03  Aligned_cols=63  Identities=29%  Similarity=0.296  Sum_probs=51.8

Q ss_pred             EEEEEEcCCEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         28 ITTACVMSTLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +++++++++++||+||..    .+|.|.||||++++|||+.+||.||++||||+.+.....++.+..
T Consensus         3 v~~vi~~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~   69 (117)
T cd04691           3 VVGVLFSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYH   69 (117)
T ss_pred             EEEEEEECCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEec
Confidence            344555678999999864    358999999999999999999999999999999766666665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.7e-18  Score=107.07  Aligned_cols=61  Identities=30%  Similarity=0.286  Sum_probs=51.4

Q ss_pred             EEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365         27 FITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV   87 (95)
Q Consensus        27 ~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   87 (95)
                      ++.+++.+ ++++||+||...+|.|.+|||++++|||+.+||.||++||||+.+...+++..
T Consensus         4 ~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   65 (125)
T cd04696           4 TVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV   65 (125)
T ss_pred             EEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEE
Confidence            44555555 78999998866678999999999999999999999999999998876666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.5e-18  Score=106.36  Aligned_cols=63  Identities=24%  Similarity=0.307  Sum_probs=52.1

Q ss_pred             EEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEec
Q psy11365         28 ITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFEV   90 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~~   90 (95)
                      +.+++.+++++||+||.+.   +|.|.||||++++|||+.+||.||++||||+.+.  ...+++.+..
T Consensus         3 v~~vi~~~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~   70 (120)
T cd04683           3 VYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHR   70 (120)
T ss_pred             EEEEEEECCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEe
Confidence            4556677899999998753   5899999999999999999999999999999876  4556665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=3.3e-18  Score=106.94  Aligned_cols=64  Identities=28%  Similarity=0.416  Sum_probs=55.3

Q ss_pred             EEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         28 ITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      ..+++.+++++||++|...  ++.|.+|||+++.|||+.+||+||++||||+.+...++++.+...
T Consensus         4 ~~~~i~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   69 (137)
T cd03427           4 TLCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFP   69 (137)
T ss_pred             EEEEEEECCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEE
Confidence            3445566799999999764  689999999999999999999999999999999888888877654

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.77  E-value=4.1e-18  Score=110.28  Aligned_cols=64  Identities=27%  Similarity=0.348  Sum_probs=51.5

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEE
Q psy11365         25 ALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVF   88 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~   88 (95)
                      .+.+.+++.+ .++|||+||...  +|.|+||||+++.|||+++||+||++||||+.+.  ..++++++
T Consensus        17 ~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~   85 (159)
T PRK15434         17 LISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW   85 (159)
T ss_pred             eEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEE
Confidence            4456666665 589999999653  4899999999999999999999999999999864  33555543

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.77  E-value=3e-18  Score=106.90  Aligned_cols=64  Identities=25%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             EEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+.+++..++++||++|.+. ++.|.||||++++|||+.+||.||++||||+.+....+++.+..
T Consensus         2 ~v~~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~   66 (134)
T cd03675           2 TVAAVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQW   66 (134)
T ss_pred             eEEEEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEe
Confidence            45566677899999998764 36999999999999999999999999999999887777776554

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.77  E-value=5.5e-18  Score=107.40  Aligned_cols=70  Identities=27%  Similarity=0.363  Sum_probs=56.5

Q ss_pred             cCCceeEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         20 RCPTMALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ..+.....+.+++++ ++++||+++...  ++.|+||||++++|||+.+||+||++||||+.+...++++.+.
T Consensus         8 ~~~~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~   80 (142)
T cd04700           8 HVEVEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYL   80 (142)
T ss_pred             CcceeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEE
Confidence            344455556656665 678999887653  4899999999999999999999999999999998888777664

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4.5e-18  Score=105.54  Aligned_cols=64  Identities=33%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             EEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+.+++.+++++||++|... ++.|.+|||+++.|||+++||.||++||||+.+...+++.++++
T Consensus         3 ~a~~iv~~~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~   67 (128)
T cd04687           3 SAKAVIIKNDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREY   67 (128)
T ss_pred             EEEEEEEECCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEE
Confidence            45566678899999998653 46899999999999999999999999999999887776666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=5.3e-18  Score=104.68  Aligned_cols=64  Identities=28%  Similarity=0.380  Sum_probs=54.4

Q ss_pred             EEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         26 LFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+.+++.+++++||+++++ .+.|.||||++++|||+.+||.||++||||+.+...++++.+..
T Consensus         3 ~~v~~~i~~~~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~   66 (123)
T cd04672           3 VDVRAAIFKDGKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDR   66 (123)
T ss_pred             ceEEEEEEECCEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecc
Confidence            45566667789999999865 68999999999999999999999999999999877777766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.76  E-value=3.4e-18  Score=108.57  Aligned_cols=53  Identities=30%  Similarity=0.463  Sum_probs=45.9

Q ss_pred             EEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365         27 FITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG   79 (95)
Q Consensus        27 ~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~   79 (95)
                      .+.+++. .++++||+||...++.|++|||++++|||+.+||+||++||||+.+
T Consensus         9 ~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (148)
T PRK09438          9 SVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDV   62 (148)
T ss_pred             EEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence            3444444 4779999988766789999999999999999999999999999987

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=7.1e-18  Score=104.67  Aligned_cols=64  Identities=30%  Similarity=0.358  Sum_probs=52.6

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         25 ALFITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ...+.+++.+ ++++||++|+.. +.|.||||++++|||+.+||.||++||||+.+.....++++.
T Consensus         7 ~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~   71 (132)
T cd04677           7 LVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYS   71 (132)
T ss_pred             ccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEec
Confidence            3344455455 589999988654 899999999999999999999999999999998877776553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=4.3e-18  Score=105.19  Aligned_cols=55  Identities=36%  Similarity=0.719  Sum_probs=48.9

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      +++||++|++. +.|.||||++++|||+.+||.||++||||+.+.....++.+.+.
T Consensus        16 ~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~   70 (131)
T cd03673          16 IEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYW   70 (131)
T ss_pred             eEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEe
Confidence            78999998654 89999999999999999999999999999999888877776553

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=8.2e-18  Score=104.04  Aligned_cols=61  Identities=28%  Similarity=0.440  Sum_probs=52.5

Q ss_pred             EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      +.+++.+++++||+|+.. .+.|.+|||+++.|||+.+||.||++||||+.+...++++.+.
T Consensus         4 v~~vi~~~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~   64 (126)
T cd04688           4 AAAIIIHNGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVE   64 (126)
T ss_pred             EEEEEEECCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEE
Confidence            445555677999998754 6799999999999999999999999999999988888877765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.75  E-value=7e-18  Score=106.39  Aligned_cols=55  Identities=29%  Similarity=0.427  Sum_probs=47.1

Q ss_pred             EEEEEEEEcCCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         26 LFITTACVMSTLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      .++++++.+++++||+||...    +|.|.+|||++++|||+.+||.||++||||+.+.
T Consensus         5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   63 (141)
T PRK15472          5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL   63 (141)
T ss_pred             eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence            355556667889999998652    4899999999999999999999999999999764

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.3e-17  Score=101.85  Aligned_cols=63  Identities=29%  Similarity=0.415  Sum_probs=52.8

Q ss_pred             EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEEecC
Q psy11365         28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVFEVR   91 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~~~~   91 (95)
                      +++++..++++||+||+ ..+.|.||||++++|||+++||.||++||||+.+..  .+.++.+...
T Consensus         4 ~~~v~~~~~~vLl~~r~-~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   68 (118)
T cd04690           4 AALILVRDGRVLLVRKR-GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAP   68 (118)
T ss_pred             EEEEEecCCeEEEEEEC-CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecc
Confidence            34444567799999875 457999999999999999999999999999998877  7788777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.2e-17  Score=103.64  Aligned_cols=65  Identities=26%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             EEEEEEEEc-CCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         26 LFITTACVM-STLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        26 ~~~~~~~~~-~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+.+++.+ ++++||++|..  .++.|.+|||+++.|||+.+||.||++||||+++...++++.+..
T Consensus         3 ~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~   70 (129)
T cd04678           3 VGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTND   70 (129)
T ss_pred             eEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeE
Confidence            355556666 48999999874  468999999999999999999999999999999887777776553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.5e-17  Score=104.04  Aligned_cols=61  Identities=28%  Similarity=0.509  Sum_probs=51.3

Q ss_pred             EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce-eeceeEEEEe
Q psy11365         28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG-KLGRSLGVFE   89 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~-~~~~~~~~~~   89 (95)
                      +.+++.++++|||+++.+ .+.|.||||++++|||+.+||.||++||||+.+ .....++.+.
T Consensus         3 ~~~ii~~~~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~   64 (131)
T cd04686           3 VRAIILQGDKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYT   64 (131)
T ss_pred             EEEEEEECCEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEE
Confidence            456667889999999865 368999999999999999999999999999986 4556666654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.9e-17  Score=102.76  Aligned_cols=60  Identities=28%  Similarity=0.442  Sum_probs=50.7

Q ss_pred             EEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         29 TTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        29 ~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      .+++++ ++++||++|.+.  ++.|.||||+++.|||+.+||.||++||||+.+...++++..
T Consensus         4 ~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~   66 (123)
T cd04671           4 AAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVE   66 (123)
T ss_pred             EEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEE
Confidence            344444 689999998753  479999999999999999999999999999999877777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.2e-17  Score=102.99  Aligned_cols=54  Identities=31%  Similarity=0.464  Sum_probs=46.7

Q ss_pred             EEEEEEcCCEEEEEEEeCC-----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         28 ITTACVMSTLILLVTSSRR-----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~-----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      +++++.+++++||++|...     +|.|.||||+++.|||+++||.||++||||+.+..
T Consensus         4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~   62 (122)
T cd04682           4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPE   62 (122)
T ss_pred             EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccc
Confidence            4445566789999999653     58999999999999999999999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.6e-17  Score=102.99  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=49.2

Q ss_pred             EcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         33 VMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        33 ~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ..++++||++|...  +|.|.+|||+++.|||+.+||.||++||||+++...++++.+.
T Consensus        10 ~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~   68 (130)
T cd04681          10 NEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLP   68 (130)
T ss_pred             cCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeec
Confidence            34689999998654  4799999999999999999999999999999988777776553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2e-17  Score=101.02  Aligned_cols=63  Identities=32%  Similarity=0.464  Sum_probs=52.9

Q ss_pred             EEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee-eceeEEEEecCC
Q psy11365         29 TTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK-LGRSLGVFEVRP   92 (95)
Q Consensus        29 ~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~-~~~~~~~~~~~~   92 (95)
                      .+++.+ ++++||++|+.. +.|.||||+++.|||+++||+||++||||+.+. ...+++.+.+..
T Consensus         4 ~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~   68 (120)
T cd04680           4 RAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSA   68 (120)
T ss_pred             EEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCC
Confidence            344444 689999988544 499999999999999999999999999999998 888888877654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.1e-17  Score=101.55  Aligned_cols=63  Identities=29%  Similarity=0.479  Sum_probs=51.2

Q ss_pred             EEEEEEEEc-CCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         26 LFITTACVM-STLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        26 ~~~~~~~~~-~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      +.+.+++++ ++++||++|+.. ++.|.||||++++|||+.+||.||++||||+.+.....++..
T Consensus         3 ~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~   67 (127)
T cd04670           3 VGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR   67 (127)
T ss_pred             eEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence            345555555 579999987543 689999999999999999999999999999998766666543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.74  E-value=2.2e-17  Score=105.01  Aligned_cols=61  Identities=23%  Similarity=0.400  Sum_probs=51.3

Q ss_pred             EEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365         27 FITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV   87 (95)
Q Consensus        27 ~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   87 (95)
                      .+.++++ .++++||++|...++.|.+|||++++||++.+||.||++||||+.+...++++.
T Consensus         5 ~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~   66 (147)
T cd03671           5 NVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAE   66 (147)
T ss_pred             eEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEE
Confidence            3444444 468999999987768999999999999999999999999999999876666654

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.73  E-value=1e-17  Score=108.55  Aligned_cols=83  Identities=19%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             cCCCCcCCccccccccccCCce-eEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHh
Q psy11365          3 YDGPVHNHGLCHVDSVRRCPTM-ALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEA   75 (95)
Q Consensus         3 y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~   75 (95)
                      ||......|.......+..... +.++.+++++ ++++||+||..    .||.|.+| ||++++|||+++||+||++|||
T Consensus         7 ~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEt   86 (165)
T cd02885           7 VDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREEL   86 (165)
T ss_pred             ECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHh
Confidence            4556666676666666555544 6666666665 57999999865    36899986 8999999999999999999999


Q ss_pred             CCceeeceeE
Q psy11365         76 GVLGKLGRSL   85 (95)
Q Consensus        76 Gl~~~~~~~~   85 (95)
                      |+.+...+++
T Consensus        87 Gl~~~~~~~~   96 (165)
T cd02885          87 GITGDLLELV   96 (165)
T ss_pred             CCCccchhhc
Confidence            9998766554

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2.6e-17  Score=103.65  Aligned_cols=58  Identities=29%  Similarity=0.457  Sum_probs=47.3

Q ss_pred             EEEEEEEEcC--CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeecee
Q psy11365         26 LFITTACVMS--TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRS   84 (95)
Q Consensus        26 ~~~~~~~~~~--~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~   84 (95)
                      ..+.++++++  +++||++|+. .|.|.+|||++++|||+.+||.||++||||+.+.....
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~   62 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP   62 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence            3445555554  7999998854 58999999999999999999999999999998654443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.72  E-value=2.2e-17  Score=103.33  Aligned_cols=59  Identities=32%  Similarity=0.341  Sum_probs=50.7

Q ss_pred             EEEEcC-CEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         30 TACVMS-TLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        30 ~~~~~~-~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      +.+.++ +++||++|+.. +|.|.+|||+++.|||+.+||.||++||||+.+....+++..
T Consensus         5 i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~   65 (131)
T cd03429           5 VLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQ   65 (131)
T ss_pred             EEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeec
Confidence            334454 89999998765 589999999999999999999999999999998887777764

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.72  E-value=7.1e-17  Score=100.69  Aligned_cols=64  Identities=25%  Similarity=0.421  Sum_probs=52.3

Q ss_pred             EEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++.+++.+++++||+||...   +|.|.||||+++.|||+.+|+.||++||||+.+...++++.+.+
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~   72 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQR   72 (135)
T ss_pred             EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEE
Confidence            44445567789999998653   48999999999999999999999999999999876666655543

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.9e-17  Score=100.56  Aligned_cols=57  Identities=58%  Similarity=0.893  Sum_probs=50.2

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec-eeEEEEecCCC
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG-RSLGVFEVRPK   93 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~-~~~~~~~~~~~   93 (95)
                      .++||+++.+. +.|.||||+++.|||+.+||+||++||||+..... ++++++.+..+
T Consensus        15 ~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~   72 (122)
T cd04666          15 VEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKR   72 (122)
T ss_pred             eEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeec
Confidence            58999988654 89999999999999999999999999999998777 88888876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=9.8e-17  Score=98.50  Aligned_cols=61  Identities=38%  Similarity=0.614  Sum_probs=50.0

Q ss_pred             EEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         27 FITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        27 ~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      .+.+++.+ ++++||+||... |.|.||||+++.|||+.+||.||++||||+.+...++++.+
T Consensus         4 ~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~   65 (129)
T cd04676           4 GVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIY   65 (129)
T ss_pred             eEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEe
Confidence            34445545 489999998655 89999999999999999999999999999988766665443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=6.3e-17  Score=98.42  Aligned_cols=59  Identities=36%  Similarity=0.522  Sum_probs=50.1

Q ss_pred             EEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         30 TACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        30 ~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +++..++++||++|..  |.|.||||++++|||+.+||.||++||||+.+....+++.+..
T Consensus         5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~   63 (112)
T cd04667           5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG   63 (112)
T ss_pred             EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC
Confidence            3445678999999853  8999999999999999999999999999999877777766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.71  E-value=6.9e-17  Score=115.16  Aligned_cols=61  Identities=30%  Similarity=0.427  Sum_probs=51.7

Q ss_pred             CceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365         22 PTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG   82 (95)
Q Consensus        22 ~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~   82 (95)
                      +...+.+.++++.++++||++|...  +|.|.+|||++++|||+++||.||++||||+++...
T Consensus       200 ~~~~vtv~avv~~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~  262 (340)
T PRK05379        200 PPTFVTVDAVVVQSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP  262 (340)
T ss_pred             CCcceEEEEEEEECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence            3344677777788899999999764  478999999999999999999999999999987544

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.71  E-value=5.6e-17  Score=111.85  Aligned_cols=74  Identities=31%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             cccccCCceeEEEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         16 DSVRRCPTMALFITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .....++.....+.+++.+++++||+++++. +|.|.+|+|++++|||+++||.||++||||+++...++++...
T Consensus       123 c~~~~yp~~~paViv~V~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~  197 (256)
T PRK00241        123 CRERYYPRIAPCIIVAVRRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQP  197 (256)
T ss_pred             CCCEECCCCCCEEEEEEEeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEe
Confidence            3334444444445556677889999998764 4899999999999999999999999999999998888887654

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.71  E-value=9.3e-17  Score=99.05  Aligned_cols=66  Identities=35%  Similarity=0.559  Sum_probs=54.0

Q ss_pred             EEEEEEEEc-CCEEEEEEEeCCC----CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         26 LFITTACVM-STLILLVTSSRRP----EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        26 ~~~~~~~~~-~~~vll~~r~~~~----g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      ..+.+++.+ ++++||+||.+.+    +.|.+|||++++|||+.+||+||+.||||+.+.....++.+.+.
T Consensus         3 ~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~   73 (134)
T PF00293_consen    3 RAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYP   73 (134)
T ss_dssp             EEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeec
Confidence            455556666 4599999998764    89999999999999999999999999999998766666655443

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.71  E-value=7.8e-17  Score=103.69  Aligned_cols=54  Identities=39%  Similarity=0.590  Sum_probs=48.0

Q ss_pred             CEEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         36 TLILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        36 ~~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      +++||+||..    .+|.|.||||++++| ||+.+||.||++||||+.+.....++.+.
T Consensus        16 ~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~   74 (157)
T cd03426          16 LRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLP   74 (157)
T ss_pred             eEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECC
Confidence            5899999976    368999999999999 99999999999999999988777777654

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=8.9e-17  Score=99.78  Aligned_cols=62  Identities=26%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             EEEcCCEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         31 ACVMSTLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        31 ~~~~~~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      ++..++++||++|..    .+|.|.+ |||++++||++.+||+||++||||+.+.....++.+.+..
T Consensus         7 i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~   73 (126)
T cd04697           7 VFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDT   73 (126)
T ss_pred             EEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecC
Confidence            344578999998864    3688998 6999999999999999999999999988777777766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.70  E-value=6.3e-17  Score=103.15  Aligned_cols=53  Identities=26%  Similarity=0.400  Sum_probs=44.1

Q ss_pred             EEEEEEc-C-CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         28 ITTACVM-S-TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        28 ~~~~~~~-~-~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      +++++.+ + +++||+|+... +.|+||||+++.|||+.+||.||++||||+.+..
T Consensus         4 ~gaii~~~~~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~   58 (145)
T cd03672           4 YGAIILNEDLDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISK   58 (145)
T ss_pred             eEEEEEeCCCCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence            3444444 3 69999998644 5999999999999999999999999999998764

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=8.8e-17  Score=99.76  Aligned_cols=54  Identities=35%  Similarity=0.425  Sum_probs=47.2

Q ss_pred             CCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         35 STLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        35 ~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      ++++||+||.+. +|.|.+|||+++.|||+.+||.||++||||+.+.....+..+
T Consensus        14 ~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~   68 (129)
T cd04664          14 EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRG   68 (129)
T ss_pred             CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeec
Confidence            679999999774 789999999999999999999999999999987655555544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.3e-16  Score=98.32  Aligned_cols=59  Identities=31%  Similarity=0.399  Sum_probs=49.3

Q ss_pred             EEEEEEEcC-CEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365         27 FITTACVMS-TLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL   85 (95)
Q Consensus        27 ~~~~~~~~~-~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~   85 (95)
                      ++.+++.++ +++||+||...    +|.|+||||++++|||+.+||.||++||||+.+.....+
T Consensus         3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~   66 (129)
T cd04699           3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRY   66 (129)
T ss_pred             eEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeee
Confidence            444555555 89999999753    579999999999999999999999999999988766653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.69  E-value=1.8e-16  Score=102.00  Aligned_cols=62  Identities=21%  Similarity=0.324  Sum_probs=51.8

Q ss_pred             EEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         27 FITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        27 ~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      .+.++++ .++++||+||...++.|.+|+|++++|||+.+||.||++||||+.+...++++.+
T Consensus        10 ~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~   72 (156)
T PRK00714         10 NVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAET   72 (156)
T ss_pred             eEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEc
Confidence            4444444 4789999999766689999999999999999999999999999988766666654

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.3e-16  Score=97.65  Aligned_cols=63  Identities=33%  Similarity=0.464  Sum_probs=54.0

Q ss_pred             EEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         28 ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      +.+++..++++||+++.  .+.|.||||+++.||++++||.||++||||+.+.....++.+....
T Consensus         3 v~vi~~~~~~vLl~~~~--~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~   65 (118)
T cd04665           3 VLVICFYDDGLLLVRHK--DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDL   65 (118)
T ss_pred             EEEEEEECCEEEEEEeC--CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecC
Confidence            34455678899999885  4689999999999999999999999999999998888888876544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1.5e-16  Score=98.52  Aligned_cols=57  Identities=32%  Similarity=0.368  Sum_probs=45.4

Q ss_pred             EEEcCCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEE
Q psy11365         31 ACVMSTLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVF   88 (95)
Q Consensus        31 ~~~~~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~   88 (95)
                      ++..++++||+||..    .+|.|.+| ||++++|||+ +||.||++||||+.+..  ...++.+
T Consensus         7 ~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~   70 (127)
T cd04693           7 IFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRY   70 (127)
T ss_pred             EEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEE
Confidence            333468999998875    35899998 8999999999 99999999999998763  3334444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1.7e-16  Score=99.07  Aligned_cols=49  Identities=33%  Similarity=0.398  Sum_probs=43.3

Q ss_pred             cCCEEEEEEEeC-CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365         34 MSTLILLVTSSR-RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG   82 (95)
Q Consensus        34 ~~~~vll~~r~~-~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~   82 (95)
                      .++++||.+|.. .+|.|.+|||++++|||+.+||.||++||||+++...
T Consensus        12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   61 (131)
T cd04695          12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL   61 (131)
T ss_pred             CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccc
Confidence            467999999865 3689999999999999999999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.68  E-value=6.9e-16  Score=94.94  Aligned_cols=57  Identities=25%  Similarity=0.466  Sum_probs=47.6

Q ss_pred             cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         34 MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        34 ~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .++++||+||...   +|.|+||||++++||++.+||.||++||||+.+...+.++.+.+
T Consensus        14 ~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~   73 (129)
T PRK10776         14 PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEY   73 (129)
T ss_pred             CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEe
Confidence            3579999998664   58999999999999999999999999999998766555555443

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.67  E-value=3.2e-16  Score=103.00  Aligned_cols=85  Identities=20%  Similarity=0.142  Sum_probs=57.8

Q ss_pred             CCCCcCCccccccccccCCceeEEEEEEEEc-CCEEEEEEEeCC----CCCE-EeceeecCCCCCHHHHHHHHHHHHhCC
Q psy11365          4 DGPVHNHGLCHVDSVRRCPTMALFITTACVM-STLILLVTSSRR----PEHW-IVPGGGVEPEEEPAATALREVAEEAGV   77 (95)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vll~~r~~~----~g~w-~~PgG~ie~gE~~~~aa~REl~EE~Gl   77 (95)
                      |......+.............+..+.+++++ ++++||++|...    +|.| .+|||++++|||+.+||.|||+||||+
T Consensus        16 d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl   95 (180)
T PRK15393         16 NENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGI   95 (180)
T ss_pred             CCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCC
Confidence            3344444444333333333445555556665 579999988642    4566 589999999999999999999999999


Q ss_pred             ceeeceeEEEE
Q psy11365         78 LGKLGRSLGVF   88 (95)
Q Consensus        78 ~~~~~~~~~~~   88 (95)
                      .......++.+
T Consensus        96 ~~~~~~~~~~~  106 (180)
T PRK15393         96 AGVPFAEHGQF  106 (180)
T ss_pred             CCccceeceeE
Confidence            86655555544

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.67  E-value=4.5e-16  Score=97.35  Aligned_cols=63  Identities=27%  Similarity=0.315  Sum_probs=50.7

Q ss_pred             EEEEEEc-CCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         28 ITTACVM-STLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        28 ~~~~~~~-~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+++++ ++++||+++.+.   ++.|.||||+++.|||+.+||.||++||||+.+.....++.+.+
T Consensus         5 v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~   71 (137)
T cd03424           5 VAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYP   71 (137)
T ss_pred             EEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEec
Confidence            3444444 589999887543   46899999999999999999999999999999876676666554

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.66  E-value=1.2e-15  Score=100.50  Aligned_cols=59  Identities=24%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             EEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         32 CVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        32 ~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+++++||+++.+.   ...|+||+|.+++||++++||+||++||||+.+...+.++.+..
T Consensus        55 ~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~  116 (185)
T PRK11762         55 ILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSL  116 (185)
T ss_pred             EeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEec
Confidence            345778999998764   35799999999999999999999999999999998888887654

>TIGR00586 mutt mutator mutT protein

Probab=99.65  E-value=1.7e-15  Score=93.34  Aligned_cols=57  Identities=21%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             EcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         33 VMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        33 ~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ..++++||.+|...   +|.|+||||+++.|||+.+|+.||+.||||+.+...+.++.+.
T Consensus        13 ~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~   72 (128)
T TIGR00586        13 NENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEY   72 (128)
T ss_pred             CCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEE
Confidence            34569999999654   4799999999999999999999999999999876655555443

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.65  E-value=7.1e-16  Score=101.56  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=56.6

Q ss_pred             CCCCcCCcccccccccc-CCceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHhC
Q psy11365          4 DGPVHNHGLCHVDSVRR-CPTMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEAG   76 (95)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~G   76 (95)
                      +......+......... ....+..+.+++++ +++|||+||..    .||.|.+| ||++++|||+++||.||++||||
T Consensus        12 d~~~~~~g~~~r~~~~~~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtG   91 (184)
T PRK03759         12 DEQGVPTGTAEKAAAHTADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELG   91 (184)
T ss_pred             CCCCCCcccccHHHHHhcCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhC
Confidence            34444555555544442 23445555565555 67999999853    36888876 89999999999999999999999


Q ss_pred             Cceee
Q psy11365         77 VLGKL   81 (95)
Q Consensus        77 l~~~~   81 (95)
                      +.+..
T Consensus        92 l~~~~   96 (184)
T PRK03759         92 VEITD   96 (184)
T ss_pred             CCccc
Confidence            98763

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.65  E-value=1.8e-15  Score=97.60  Aligned_cols=62  Identities=34%  Similarity=0.425  Sum_probs=52.2

Q ss_pred             EEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         29 TTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        29 ~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      .++...++++||+++..  ..|+||||++++|||+.+||+||++||||+.+....+++.+....
T Consensus        28 ~ii~~~~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~   89 (156)
T TIGR02705        28 LVIPRYKDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEG   89 (156)
T ss_pred             EEEEEECCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecC
Confidence            33444566999998754  469999999999999999999999999999999999999877643

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.64  E-value=4.8e-16  Score=97.44  Aligned_cols=48  Identities=38%  Similarity=0.443  Sum_probs=42.1

Q ss_pred             cCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         34 MSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        34 ~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      +++++||+|+... .|.|.||+|++++|||+.+||.||++||||+.+..
T Consensus        11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~   59 (132)
T cd04661          11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA   59 (132)
T ss_pred             cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE
Confidence            4678999998653 47999999999999999999999999999997653

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1.3e-15  Score=96.42  Aligned_cols=63  Identities=25%  Similarity=0.360  Sum_probs=48.7

Q ss_pred             EEEEEEEc-C---CEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEe
Q psy11365         27 FITTACVM-S---TLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFE   89 (95)
Q Consensus        27 ~~~~~~~~-~---~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~   89 (95)
                      ++.+++++ +   +++|+++|+.    .+|.|.+ |||++++|||+.+||+||++||||+.+.  .+..++.+.
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~   77 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFK   77 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEE
Confidence            44445554 4   7899999865    3689998 5999999999999999999999999764  344455544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.63  E-value=5.5e-16  Score=96.00  Aligned_cols=47  Identities=38%  Similarity=0.550  Sum_probs=42.4

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL   85 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~   85 (95)
                      ++||+||+.  +.|.||||++++|||+.+||.||++||||+.+.....+
T Consensus        18 ~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   64 (130)
T cd03428          18 EYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIV   64 (130)
T ss_pred             eEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhh
Confidence            689998865  89999999999999999999999999999998766654

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.63  E-value=1.3e-15  Score=98.26  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             cCCCCcCCccccccccc-cCCceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHh
Q psy11365          3 YDGPVHNHGLCHVDSVR-RCPTMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEA   75 (95)
Q Consensus         3 y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~   75 (95)
                      |+......+........ .....+..+.+++++ ++++||+||..    .||.|.+| ||+++.||  .+||.||++|||
T Consensus         4 ~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~   81 (158)
T TIGR02150         4 VDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREEL   81 (158)
T ss_pred             ECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHH
Confidence            55666666776666665 345566666667776 57999999875    36999997 89999999  499999999999


Q ss_pred             CCceeec
Q psy11365         76 GVLGKLG   82 (95)
Q Consensus        76 Gl~~~~~   82 (95)
                      |+.+...
T Consensus        82 Gl~~~~~   88 (158)
T TIGR02150        82 GIPADDV   88 (158)
T ss_pred             CCCcccc
Confidence            9987654

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=3.6e-15  Score=94.96  Aligned_cols=61  Identities=30%  Similarity=0.474  Sum_probs=49.4

Q ss_pred             EEEEEE-cCCEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec----eeEEEE
Q psy11365         28 ITTACV-MSTLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG----RSLGVF   88 (95)
Q Consensus        28 ~~~~~~-~~~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~----~~~~~~   88 (95)
                      +.++++ .++++||+||..    .+|.|.+|||++++||++.+||.||++||+|+.+...    ++++++
T Consensus         4 v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~   73 (143)
T cd04694           4 VAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLW   73 (143)
T ss_pred             EEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeee
Confidence            344434 468999999974    4689999999999999999999999999999987653    555554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=5.8e-15  Score=91.41  Aligned_cols=59  Identities=25%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             EEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEEec
Q psy11365         31 ACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVFEV   90 (95)
Q Consensus        31 ~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~~~   90 (95)
                      +...+ .+||++|...  .|.|.||||++++|||+.+||.||++||||+.+..  ...+..+.+
T Consensus        11 l~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~~~   73 (118)
T cd04674          11 LPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDVRSA   73 (118)
T ss_pred             EEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEEec
Confidence            33444 5666676553  48999999999999999999999999999998753  344444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.60  E-value=1.1e-14  Score=88.50  Aligned_cols=60  Identities=32%  Similarity=0.500  Sum_probs=49.5

Q ss_pred             EEEc-CCEEEEEEEeC---CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         31 ACVM-STLILLVTSSR---RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        31 ~~~~-~~~vll~~r~~---~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++.+ ++++||++|+.   .+|.|.||+|+++.+|++.+||.||+.||||+.+...+.++.+.+
T Consensus         7 ~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~   70 (124)
T cd03425           7 IIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEH   70 (124)
T ss_pred             EEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEe
Confidence            3344 48999999865   358999999999999999999999999999998876666665543

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.1e-14  Score=87.83  Aligned_cols=64  Identities=39%  Similarity=0.606  Sum_probs=51.4

Q ss_pred             EEEEEEcC-CEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         28 ITTACVMS-TLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        28 ~~~~~~~~-~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      +.+++.++ +++||++|... +|.|.||+|+++.+|++.++|.||+.||+|+.......++.+.+.
T Consensus         3 ~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~   68 (123)
T cd02883           3 VGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVE   68 (123)
T ss_pred             eEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEee
Confidence            34455555 89999998653 689999999999999999999999999999987655555555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.58  E-value=1.6e-14  Score=95.83  Aligned_cols=56  Identities=32%  Similarity=0.438  Sum_probs=47.8

Q ss_pred             CCEEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         35 STLILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        35 ~~~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++.+|+.||..    .+|.|+||||++|++ |++.+||+||++||||+.....+.++.+..
T Consensus        43 ~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~  103 (190)
T PRK10707         43 QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPP  103 (190)
T ss_pred             CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeee
Confidence            45888888654    358999999999985 689999999999999999988888888763

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.57  E-value=1.2e-14  Score=95.98  Aligned_cols=56  Identities=34%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             CCEEEEEEEeCC--------CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         35 STLILLVTSSRR--------PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        35 ~~~vll~~r~~~--------~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++++||+++.+.        +..|+||+|++++||++++||+||++||||+.+.....++.+..
T Consensus        56 ~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~  119 (185)
T TIGR00052        56 KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYS  119 (185)
T ss_pred             CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEc
Confidence            478999998652        35788999999999999999999999999999987777776543

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=3e-14  Score=89.64  Aligned_cols=56  Identities=38%  Similarity=0.723  Sum_probs=45.9

Q ss_pred             EEEE-cCCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCce-eeceeE
Q psy11365         30 TACV-MSTLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLG-KLGRSL   85 (95)
Q Consensus        30 ~~~~-~~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~-~~~~~~   85 (95)
                      ++++ .++++||+++...    ++.|.+|||+++.||++.+||.||++||||+.+ .....+
T Consensus         5 ~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~   66 (133)
T cd04685           5 VVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV   66 (133)
T ss_pred             EEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceE
Confidence            3444 5789999988652    469999999999999999999999999999987 444444

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2.7e-14  Score=93.57  Aligned_cols=64  Identities=23%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             cccCCceeEEEEE--EEEc-C--CEEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         18 VRRCPTMALFITT--ACVM-S--TLILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        18 ~~~~~~~~~~~~~--~~~~-~--~~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      .......+.++.+  ++.+ +  ++++++||+.    .||.|. +|+|+++.|||+.+||+||++||||+....
T Consensus        25 ~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~   98 (180)
T cd03676          25 SRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDL   98 (180)
T ss_pred             cccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHH
Confidence            3333344444443  2333 2  6899999875    479995 999999999999999999999999998764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=9e-14  Score=86.92  Aligned_cols=45  Identities=31%  Similarity=0.501  Sum_probs=39.3

Q ss_pred             CEEEEEEEe------CCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         36 TLILLVTSS------RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        36 ~~vll~~r~------~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      .++||++|.      +..+.|+||||+++.||++.+||+||++||||+.+.
T Consensus        15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662          15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            369999852      345799999999999999999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.53  E-value=6.4e-14  Score=86.12  Aligned_cols=55  Identities=38%  Similarity=0.515  Sum_probs=45.9

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHH-HHHHHHHHHhCCcee--eceeEEEEec
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAA-TALREVAEEAGVLGK--LGRSLGVFEV   90 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~-aa~REl~EE~Gl~~~--~~~~~~~~~~   90 (95)
                      .++|+.++....+.|.||||+++++|++.+ ||+||++||||+.+.  ....++.+..
T Consensus        24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (161)
T COG0494          24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPP   81 (161)
T ss_pred             CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccC
Confidence            688888886544599999999999999888 999999999999888  5666665544

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.52  E-value=1.1e-13  Score=92.69  Aligned_cols=56  Identities=21%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             CCEEEEEEEeCCC--------CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         35 STLILLVTSSRRP--------EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        35 ~~~vll~~r~~~~--------g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +++++|+++.+.+        -.|+||+|.+++||++++||+|||.||||+.+.....++.+..
T Consensus        61 ~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~  124 (202)
T PRK10729         61 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLA  124 (202)
T ss_pred             CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEc
Confidence            4699999998764        2589999999999999999999999999999887776665543

>PRK08999 hypothetical protein; Provisional

Probab=99.50  E-value=2.1e-13  Score=95.74  Aligned_cols=56  Identities=32%  Similarity=0.433  Sum_probs=46.8

Q ss_pred             cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         34 MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        34 ~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .++++||.||...   +|.|+||||+++.||++.+|+.||++||||+.+.....+..+.
T Consensus        15 ~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~   73 (312)
T PRK08999         15 ADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVR   73 (312)
T ss_pred             CCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEE
Confidence            4589999998653   5899999999999999999999999999999876555555443

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.48  E-value=5.2e-13  Score=88.39  Aligned_cols=41  Identities=34%  Similarity=0.525  Sum_probs=37.2

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVL   78 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~   78 (95)
                      ++|+++|. ..|.|.||||+++++|++.+||.||++||||+.
T Consensus        50 ~vLl~~r~-~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          50 QFVAIKRP-DSGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             EEEEEEeC-CCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            78888884 468999999999999999999999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.48  E-value=1.3e-13  Score=95.53  Aligned_cols=77  Identities=27%  Similarity=0.273  Sum_probs=63.8

Q ss_pred             ccccccCCceeEEEEEEEEcCCEEEEEEEeC-CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         15 VDSVRRCPTMALFITTACVMSTLILLVTSSR-RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~vll~~r~~-~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .+....+|....++++++.+++++||.++.+ .+|.|..-.|+||+|||+++|..||++||+|++++.++++++..-|
T Consensus       134 ~cg~~~fPR~dP~vIv~v~~~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWP  211 (279)
T COG2816         134 KCGHEHFPRIDPCVIVAVIRGDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWP  211 (279)
T ss_pred             CCCCccCCCCCCeEEEEEecCCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCC
Confidence            3445566777777777888888888887766 4689999999999999999999999999999999999988865433

>PLN02709 nudix hydrolase

Probab=99.47  E-value=2.2e-13  Score=92.15  Aligned_cols=54  Identities=35%  Similarity=0.490  Sum_probs=47.5

Q ss_pred             EEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         37 LILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        37 ~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++||.+|..    ++|.|.||||+++++ +++.+||+||+.||+||.....+.++.++.
T Consensus        52 ~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~  110 (222)
T PLN02709         52 RVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP  110 (222)
T ss_pred             EEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC
Confidence            899999976    469999999999997 478999999999999999887888877654

>KOG3084|consensus

Probab=99.46  E-value=1.3e-13  Score=96.58  Aligned_cols=63  Identities=24%  Similarity=0.245  Sum_probs=49.2

Q ss_pred             eEEEEEEEEcCC-EEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365         25 ALFITTACVMST-LILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV   87 (95)
Q Consensus        25 ~~~~~~~~~~~~-~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   87 (95)
                      .+++..++..++ +.||.|.+++ +|.|..++|.+|+|||+++|++||++||+|++++..++...
T Consensus       188 PvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~as  252 (345)
T KOG3084|consen  188 PVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVAS  252 (345)
T ss_pred             CeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeec
Confidence            344444444444 6777766554 48999999999999999999999999999999988775544

>KOG2839|consensus

Probab=99.46  E-value=2.6e-13  Score=85.77  Aligned_cols=65  Identities=54%  Similarity=0.847  Sum_probs=53.4

Q ss_pred             eEEEEEEEEc--CC--EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         25 ALFITTACVM--ST--LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        25 ~~~~~~~~~~--~~--~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .+++.+++.+  +.  +|||+..++.+..|.+|+|++|++|+..+||.||.+||.|+.....+.++.+.
T Consensus         9 r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~   77 (145)
T KOG2839|consen    9 RLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE   77 (145)
T ss_pred             EEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh
Confidence            4445555543  33  89999987778899999999999999999999999999999988888666554

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=9.6e-13  Score=82.32  Aligned_cols=41  Identities=37%  Similarity=0.550  Sum_probs=35.4

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG   79 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~   79 (95)
                      ++|+.+. .. +.|+||||++++|||+.+||.||++||||+.+
T Consensus        15 ~ll~~r~-~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663          15 ELLVFEH-PL-AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEc-CC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            5666654 33 56999999999999999999999999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.37  E-value=4.5e-12  Score=84.21  Aligned_cols=54  Identities=20%  Similarity=0.158  Sum_probs=45.1

Q ss_pred             CCEEEEEEEeCCC-------C--CEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         35 STLILLVTSSRRP-------E--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        35 ~~~vll~~r~~~~-------g--~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      +++++|+++.+.+       +  .|+||+|.++++ ++++||+|||+||||+.+.....++.+.
T Consensus        57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~  119 (191)
T PRK15009         57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELY  119 (191)
T ss_pred             CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEE
Confidence            5799999998754       3  578999999976 6999999999999999988777666553

>PLN02791 Nudix hydrolase homolog

Probab=99.28  E-value=2.1e-11  Score=94.33  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             CCCCcCCcc-ccccccccCCceeEEEEEEEEc--CCEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHh
Q psy11365          4 DGPVHNHGL-CHVDSVRRCPTMALFITTACVM--STLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEA   75 (95)
Q Consensus         4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~   75 (95)
                      +......|. ..+.........+.++.+++++  ++++||+||+.    .||.|.+ |||+++.|||..+||+||+.||+
T Consensus        10 De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EEL   89 (770)
T PLN02791         10 TAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEEL   89 (770)
T ss_pred             CCCCCCCCccccHHhhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHh
Confidence            334444454 2333344445566677777766  47999999976    5799997 79999999999999999999999


Q ss_pred             CCcee--eceeEEE
Q psy11365         76 GVLGK--LGRSLGV   87 (95)
Q Consensus        76 Gl~~~--~~~~~~~   87 (95)
                      ||.+.  ...+++.
T Consensus        90 GI~l~~~~l~~l~~  103 (770)
T PLN02791         90 GIILPKDAFELLFV  103 (770)
T ss_pred             CCCCChhheeeeee
Confidence            99754  2344444

>PLN03143 nudix hydrolase; Provisional

Probab=99.28  E-value=2.2e-11  Score=85.43  Aligned_cols=44  Identities=32%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             EEEEEEEeCCC---CCEEeceeecCC-CCCHHHHHHHHHHHHhCCcee
Q psy11365         37 LILLVTSSRRP---EHWIVPGGGVEP-EEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        37 ~vll~~r~~~~---g~w~~PgG~ie~-gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      +++|+++.+.+   -.|+||+|.+++ +|++.+||+||++||||+.+.
T Consensus       144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~  191 (291)
T PLN03143        144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK  191 (291)
T ss_pred             EEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence            38999988743   378899999997 489999999999999999754

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.27  E-value=3.9e-11  Score=82.51  Aligned_cols=70  Identities=13%  Similarity=0.028  Sum_probs=48.7

Q ss_pred             CCceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCC-----------------HHHHHHHHHHHHhCC
Q psy11365         21 CPTMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEE-----------------PAATALREVAEEAGV   77 (95)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~-----------------~~~aa~REl~EE~Gl   77 (95)
                      ....+.++.+++++ ++++||+||+.    .||.|... +|++..||+                 ..+||.|||+|||||
T Consensus        52 ~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI  131 (247)
T PLN02552         52 RGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI  131 (247)
T ss_pred             CCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence            34556666666666 57999999976    47899755 465555422                 689999999999999


Q ss_pred             ceee-----ceeEEEEec
Q psy11365         78 LGKL-----GRSLGVFEV   90 (95)
Q Consensus        78 ~~~~-----~~~~~~~~~   90 (95)
                      ....     +.+++.+.+
T Consensus       132 ~~~~~~~~~l~~~~~~~y  149 (247)
T PLN02552        132 PAEDVPVDQFTFLTRLHY  149 (247)
T ss_pred             CccccccccceeeeEEEE
Confidence            8542     445554433

>KOG3041|consensus

Probab=99.13  E-value=5.2e-10  Score=74.24  Aligned_cols=58  Identities=29%  Similarity=0.383  Sum_probs=45.1

Q ss_pred             ceeEEEEEEEEcCC--EEEEEEEeCCC-C--CEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         23 TMALFITTACVMST--LILLVTSSRRP-E--HWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        23 ~~~~~~~~~~~~~~--~vll~~r~~~~-g--~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      ...+.+.+++-.++  .++|+++.+-| |  ..+||+|-++.||+++.||.|||+||||+.-.
T Consensus        73 ~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk  135 (225)
T KOG3041|consen   73 ADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK  135 (225)
T ss_pred             CCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce
Confidence            34445555555555  68888887755 5  45699999999999999999999999999744

>KOG3069|consensus

Probab=98.92  E-value=2.2e-09  Score=72.81  Aligned_cols=54  Identities=35%  Similarity=0.488  Sum_probs=44.7

Q ss_pred             CEEEEEEEeC----CCCCEEeceeecCCC-CCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         36 TLILLVTSSR----RPEHWIVPGGGVEPE-EEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        36 ~~vll~~r~~----~~g~w~~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .++||.||.+    ++|.-.||||+.+.. +|..++|.||..||+|+.....++++.+.
T Consensus        58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~  116 (246)
T KOG3069|consen   58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALP  116 (246)
T ss_pred             eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhcc
Confidence            3899999876    468999999999985 57888999999999999887666666544

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.82  E-value=4.7e-08  Score=58.93  Aligned_cols=49  Identities=14%  Similarity=0.177  Sum_probs=40.3

Q ss_pred             EEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhC
Q psy11365         28 ITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAG   76 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~G   76 (95)
                      +++++.+++++||.||...   +|.|+||+|.++.+++.+++..|++.++.+
T Consensus         6 ~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~   57 (118)
T cd03431           6 AVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR   57 (118)
T ss_pred             EEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence            3444455789999999653   589999999999999999999999998875

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648|consensus

Probab=98.76  E-value=1.1e-08  Score=71.66  Aligned_cols=60  Identities=25%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             CCceeEEEEEEEEcC-CEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         21 CPTMALFITTACVMS-TLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      .....+.+.+++++. ++||+++...    ..|.|.+|+|.|+++|++.++|.||++||||++..
T Consensus       111 ~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~e  175 (295)
T KOG0648|consen  111 NASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTE  175 (295)
T ss_pred             chhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchh
Confidence            344556677777775 4999998644    35899999999999999999999999999998644

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.54  E-value=2.1e-07  Score=58.24  Aligned_cols=44  Identities=32%  Similarity=0.477  Sum_probs=37.3

Q ss_pred             EEEEEEEeC------CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         37 LILLVTSSR------RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        37 ~vll~~r~~------~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      .|||++.-.      +.|.|.+|.|....||++..||+||..||+||.+.
T Consensus        19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd   68 (161)
T COG4119          19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD   68 (161)
T ss_pred             EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence            566665421      34899999999999999999999999999999875

>PLN02839 nudix hydrolase

Probab=98.43  E-value=8.1e-07  Score=64.12  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             CEEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCcee---eceeEEEEecC
Q psy11365         36 TLILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGK---LGRSLGVFEVR   91 (95)
Q Consensus        36 ~~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~---~~~~~~~~~~~   91 (95)
                      .++++.||+.    +||.|. +.+|.+..||++.+++.||..||+||...   .....|++.+.
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~  281 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYM  281 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEE
Confidence            3688888865    579997 88999999999999999999999999754   44556666654

>KOG4195|consensus

Probab=98.29  E-value=8.5e-07  Score=60.09  Aligned_cols=38  Identities=39%  Similarity=0.619  Sum_probs=33.3

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHh
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEA   75 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~   75 (95)
                      +++.+|| ...|.|.+|||.+++||.+-.+++||+.||.
T Consensus       140 e~vavkr-~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  140 EFVAVKR-PDNGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             EEEEEec-CCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            5667776 4568999999999999999999999999995

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.20  E-value=1.8e-06  Score=56.50  Aligned_cols=69  Identities=20%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCcee---eceeEEEEecCCC
Q psy11365         25 ALFITTACVM-STLILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGK---LGRSLGVFEVRPK   93 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~---~~~~~~~~~~~~~   93 (95)
                      +....+++++ +|++||.||..    .|+.|. -.+|+--+|||..+|++|-+.+|+||+..   ..+++..+.|...
T Consensus        33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~  110 (185)
T COG1443          33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAA  110 (185)
T ss_pred             HhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEecc
Confidence            4444555555 78999999864    578998 67899999999999999999999999876   3344444444433

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.09  E-value=7.5e-06  Score=49.66  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=35.3

Q ss_pred             EEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         29 TTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        29 ~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+++..++++||.||...   .|.|+||.-..+...+ .+.+.+.+.+..|+.+...+.++.+.+
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~H   65 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVEPLGTVKH   65 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S-SEEEEE
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhheecCcEEE
Confidence            445567899999999764   4899999988874333 555666676788887665555555443

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.36  E-value=0.0044  Score=41.29  Aligned_cols=54  Identities=22%  Similarity=0.411  Sum_probs=37.3

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCce------eeceeEEEEecCC
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLG------KLGRSLGVFEVRP   92 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~------~~~~~~~~~~~~~   92 (95)
                      +|||.|...  ..|.+|||...+||+..++++|.|.+-++..-      ...++++.+.-++
T Consensus        59 HvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~  118 (188)
T PF13869_consen   59 HVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPN  118 (188)
T ss_dssp             EEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESS
T ss_pred             EEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCC
Confidence            799998633  38999999999999999999999999998752      2446777665443

...

>KOG2937|consensus

Probab=97.27  E-value=4.7e-05  Score=54.27  Aligned_cols=44  Identities=32%  Similarity=0.502  Sum_probs=38.1

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      .++||++... ...|.||.|++...|+...||.||+.||||.+..
T Consensus        95 sr~llv~g~q-a~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   95 SRCLLVKGWQ-ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             hhhheeecee-cccccccCccccccchhhhcchhcccchhhcCHH
Confidence            4888887643 3469999999999999999999999999999864

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.36  E-value=0.025  Score=37.04  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=43.7

Q ss_pred             EEEEEEEcCCEEEEEEEeCCC------CCEEec-eeecCCCC---CHHHH----HHHHHHHHhCCc---eeeceeEEEEe
Q psy11365         27 FITTACVMSTLILLVTSSRRP------EHWIVP-GGGVEPEE---EPAAT----ALREVAEEAGVL---GKLGRSLGVFE   89 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~~------g~w~~P-gG~ie~gE---~~~~a----a~REl~EE~Gl~---~~~~~~~~~~~   89 (95)
                      +-++++.+.++||+..|...+      +.+.+- ||++..++   +..+.    +.|||.||.++.   ...+.++|-+.
T Consensus        63 IpYvvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlIN  142 (203)
T COG4112          63 IPYVVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIN  142 (203)
T ss_pred             ccEEEEecCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeec
Confidence            344455567799999997654      355543 89998764   44443    679999999997   44566776654


Q ss_pred             c
Q psy11365         90 V   90 (95)
Q Consensus        90 ~   90 (95)
                      .
T Consensus       143 d  143 (203)
T COG4112         143 D  143 (203)
T ss_pred             C
Confidence            4

>KOG1689|consensus

Probab=96.22  E-value=0.014  Score=38.46  Aligned_cols=53  Identities=25%  Similarity=0.409  Sum_probs=39.3

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhC------CceeeceeEEEEec
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG------VLGKLGRSLGVFEV   90 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~G------l~~~~~~~~~~~~~   90 (95)
                      .+|||.|-  ..-.+.+|||..++||+-.+.++|-+-|-+|      .+....+.++...-
T Consensus        84 PHvLLLQi--g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~dg~~~dwtv~ecig~WWR  142 (221)
T KOG1689|consen   84 PHVLLLQI--GNTFFKLPGGRLRPGEDEADGLKRLLTESLGRSDGLVIDWTVGECIGNWWR  142 (221)
T ss_pred             CeEEEEee--CCEEEecCCCccCCCcchhHHHHHHHHHHhcccccccccccHhhhhhcccC
Confidence            47887764  2347789999999999999999999999999      33334455554443

>KOG4313|consensus

Probab=95.12  E-value=0.034  Score=38.75  Aligned_cols=43  Identities=28%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             EEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCce
Q psy11365         37 LILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLG   79 (95)
Q Consensus        37 ~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~   79 (95)
                      ++.+.||++    .||.|. +.+|.+.-|-.+.++++.|..||+.+..
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~  196 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS  196 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence            677888765    467887 7899999999999999999999999976

>KOG4432|consensus

Probab=95.04  E-value=0.033  Score=39.84  Aligned_cols=40  Identities=28%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             EeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         51 IVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        51 ~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++.+|.|++..|+.+-|..|+.||.|.++...+++.++++
T Consensus        82 elc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~  121 (405)
T KOG4432|consen   82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITF  121 (405)
T ss_pred             eeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEE
Confidence            3569999999999999999999999999987777777664

>PRK10880 adenine DNA glycosylase; Provisional

Probab=94.92  E-value=0.08  Score=38.48  Aligned_cols=42  Identities=17%  Similarity=0.135  Sum_probs=26.4

Q ss_pred             EEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365         30 TACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVL   78 (95)
Q Consensus        30 ~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~   78 (95)
                      .++.+++++||.||...   .|.|+||..  +..+     ..++..|+.|+.
T Consensus       236 ~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~~-----~~~~~~~~~~~~  280 (350)
T PRK10880        236 LLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADEE-----ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEECCEEEEEECCccChhhccccCCCC--cchh-----hHHHHHHhcCCc
Confidence            34446789999998654   489999963  2211     234455666664

>KOG4548|consensus

Probab=93.88  E-value=0.12  Score=35.87  Aligned_cols=42  Identities=26%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             EEEEEEEe-CCCCCEEeceeec-CCCCCHHHHHHHHHHHHhCCc
Q psy11365         37 LILLVTSS-RRPEHWIVPGGGV-EPEEEPAATALREVAEEAGVL   78 (95)
Q Consensus        37 ~vll~~r~-~~~g~w~~PgG~i-e~gE~~~~aa~REl~EE~Gl~   78 (95)
                      -+||++++ ...+.|.||-+.. ++++++..+|.|.|++-.|=.
T Consensus       140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~  183 (263)
T KOG4548|consen  140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN  183 (263)
T ss_pred             EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence            47788755 3457999999999 899999999999999887743

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=92.53  E-value=0.52  Score=33.15  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=17.3

Q ss_pred             cCCEEEEEEEeCC---CCCEEecee
Q psy11365         34 MSTLILLVTSSRR---PEHWIVPGG   55 (95)
Q Consensus        34 ~~~~vll~~r~~~---~g~w~~PgG   55 (95)
                      .++++||.||...   .|.|+||+.
T Consensus       237 ~~~~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       237 YDGEVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             CCCeEEEEeCCCCchhhccccCCCC
Confidence            4689999998654   489999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG0142|consensus

Probab=90.08  E-value=0.14  Score=34.58  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeC----CCCCEE-----ec----eeecC-CCCCHHHHHHHHHHHHhCCceee
Q psy11365         25 ALFITTACVM-STLILLVTSSR----RPEHWI-----VP----GGGVE-PEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~----~~g~w~-----~P----gG~ie-~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      +....+++++ ++++||+||+.    .|+.|.     -|    +...+ .+.....||+|-|.-|+||..+.
T Consensus        52 HRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~  123 (225)
T KOG0142|consen   52 HRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEE  123 (225)
T ss_pred             hheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccc
Confidence            3344445554 68999999875    357776     22    22211 13368899999999999997653

>PRK13910 DNA glycosylase MutY; Provisional

Probab=89.19  E-value=0.74  Score=32.67  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=18.2

Q ss_pred             EEEcCCEEEEEEEeC--CCCCEEecee
Q psy11365         31 ACVMSTLILLVTSSR--RPEHWIVPGG   55 (95)
Q Consensus        31 ~~~~~~~vll~~r~~--~~g~w~~PgG   55 (95)
                      ++.+++++||.||..  ..|.|+||..
T Consensus       192 ~~~~~~~~ll~kr~~~l~~gl~~fP~~  218 (289)
T PRK13910        192 VVIQNNQIALEKIEQKLYLGMHHFPNL  218 (289)
T ss_pred             EEEECCEEEEEECCCchhcccccCCCC
Confidence            444678999998843  2489999963

>PF14443 DBC1: DBC1

Probab=84.99  E-value=1.2  Score=28.01  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=26.3

Q ss_pred             CCCEE--eceeecCCC-CCHHHHHHHHHHHHhCCcee
Q psy11365         47 PEHWI--VPGGGVEPE-EEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        47 ~g~w~--~PgG~ie~g-E~~~~aa~REl~EE~Gl~~~   80 (95)
                      +|.|.  +=||-...+ .++..+|+|=+++-|||+..
T Consensus        23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS   59 (126)
T PF14443_consen   23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS   59 (126)
T ss_pred             CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence            46776  456666553 47899999999999999875

>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []

Probab=83.12  E-value=1.4  Score=22.13  Aligned_cols=22  Identities=45%  Similarity=0.690  Sum_probs=11.9

Q ss_pred             eeecCCCCCHHHHHHHHHHHHh
Q psy11365         54 GGGVEPEEEPAATALREVAEEA   75 (95)
Q Consensus        54 gG~ie~gE~~~~aa~REl~EE~   75 (95)
                      ||-..+|--+..++.||+-||+
T Consensus        15 ggLasPgPvp~~~alkELIeEL   36 (43)
T PF03487_consen   15 GGLASPGPVPSSTALKELIEEL   36 (43)
T ss_dssp             --------S-HHHHHHHHHHHH
T ss_pred             cccCCCCCCCchHHHHHHHHHH
Confidence            6777788888899999999996

It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
2duk_A	138	Crystal Structure Of Ms0616 Length = 138		5e-08
3mcf_A	136	Crystal Structure Of Human Diphosphoinositol Polyph		5e-08
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		5e-07

>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616 Length = 138

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
          +LLV+SSR P+ WI               A+REV EEAGV GKLGR LG+FE + +
Sbjct: 26 VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFENQDR 81

>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate Phosphohydrolase 3-Alpha Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 32/52 (61%)
Query: 38 ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV+SSR P+ WI               A+REV EEAGV GKLGR LGVFE
Sbjct: 18 VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFE 69

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 38  ILLVTSSRRPEHWIXXXXXXXXXXXXAATALREVAEEAGVLGKLGRSLGVFEVRPK 93
           +LLV+SSR P+ WI            +  A+REV EEAGV G LGR +G+FE + +
Sbjct: 56  VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER 111
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	6e-16
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	7e-13
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	1e-12
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-12
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	2e-11
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	2e-11
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	3e-11
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	4e-11
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	4e-11
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	7e-11
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-10
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	1e-10
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	3e-10
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	3e-10
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	3e-10
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	6e-10
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	2e-09
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	3e-09
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	9e-09
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	1e-08
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	1e-08
3exq_A	161	Nudix family hydrolase; protein structure initiati	1e-08
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	1e-08
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-08
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	3e-08
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	3e-08
3f13_A	163	Putative nudix hydrolase family member; structural	3e-08
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	6e-08
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	9e-08
3grn_A	153	MUTT related protein; structural genomics, hydrola	2e-07
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-07
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	3e-07
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	3e-07
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-07
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	1e-06
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	1e-06
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	2e-06
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	4e-06
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	6e-06
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	9e-06
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	3e-05
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	3e-05
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	5e-05
2fb1_A	226	Conserved hypothetical protein; structural genomic	5e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	1e-04
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-04
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	2e-04
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	3e-04
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	3e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	5e-04
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	6e-04
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	7e-04

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 68.1 bits (166), Expect = 6e-16
 Identities = 35/52 (67%), Positives = 43/52 (82%)

Query: 37  LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
            +LLV+SSR P+ WIVPGGG+EPEEEP+  A+REV EEAGV G LGR +G+F
Sbjct: 55  EVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIF 106

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 59.0 bits (143), Expect = 7e-13
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
           LL+ +S    HW  P G VEP E+   TALR   EEAG+       +  F+
Sbjct: 31 FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFK 82

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 57.6 bits (140), Expect = 2e-12
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
           LL+ +S  P HW  P G V+P E+    A+RE  EEA +  +         
Sbjct: 20 FLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCH 71

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
          +L+    +    +   GG ++  E      +REV EE GV  + G+   V E R +V 
Sbjct: 32 LLVT---KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVD 86

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 16 DSVRRCPTMALFITTACVMSTL--ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREV 71
           +  R      ++  A  +S    +LL+  ++R     W +P G +EP E       REV
Sbjct: 10 PAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREV 69

Query: 72 AEEAGVLGKLGRSLGVFEVRP 92
           EEAG+  +    L V E  P
Sbjct: 70 KEEAGLHCEPETLLSVEERGP 90

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LLV        W +PGG VE  E      +RE+ EE G+  K+ + L V +
Sbjct: 36 VLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCD 87

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 54.2 bits (131), Expect = 4e-11
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LL+    R   W+ P G  EP E     A+REV EE GV  ++   L    
Sbjct: 16 VLLL--RDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTR 65

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 55.5 bits (134), Expect = 4e-11
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 38  ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
           +L V   +      W +PGG  +    P   A +EV EE G      + L +F+     P
Sbjct: 81  LLFV---KEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP 137

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 54.7 bits (132), Expect = 7e-11
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 24 MALFITTACVM--STLILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLG 79
          M+L   T C++     +LL+   ++P    W+ PGG +E  E    T  RE  EE G+  
Sbjct: 1  MSLQRVTNCIVVDHDQVLLL---QKPRRGWWVAPGGKMEAGESILETVKREYWEETGITV 57

Query: 80 KLGRSLGVFEV 90
          K     G+F +
Sbjct: 58 KNPELKGIFSM 68

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 54.7 bits (131), Expect = 1e-10
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 38  ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
            +LV   +    W  P G ++ +E     A+REV EE G 
Sbjct: 116 CVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 155

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 53.8 bits (129), Expect = 1e-10
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
           +LV   R      W  PGG  EPEE+   TA+REV EE G+  +    L + +
Sbjct: 40 KILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ 93

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 40 LVTSSRRPEH-WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
           +   + P   + +PGG +E  E       REV EE G+  ++G  LG  +
Sbjct: 32 TMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEAD 82

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 51.9 bits (125), Expect = 3e-10
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          I+L+     P    +PGG VE  E     A RE+ EE G+  +L + +GV+
Sbjct: 27 IVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVY 77

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 51.7 bits (124), Expect = 6e-10
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 38 ILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
          ILLV     P H      W +P G VE  E P   A+RE  EE G+  +  + LG +  R
Sbjct: 27 ILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR 86

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 28  ITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87
           + T   +     ++        W +PGG  + ++      ++EV EEAG+  +  R + +
Sbjct: 71  LDTRAAIFQEDKILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAI 130

Query: 88  FEVRPKVP 95
            +     P
Sbjct: 131 LDKHKNNP 138

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
          + +V   +  + W  P G +E  E     A+RE+ EE G   KLG  L   E  
Sbjct: 40 VCIVHRPKY-DDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYP 92

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 48.3 bits (115), Expect = 9e-09
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
          +LLV   +      +I PGG VE  E P     RE  EE G++ +             V 
Sbjct: 14 VLLV---KHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVE 70

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 48.3 bits (115), Expect = 1e-08
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
          ILLV  +     W  P G +  +E      +REV EE G 
Sbjct: 19 ILLVQGTESD-SWSFPRGKISKDENDIDCCIREVKEEIGF 57

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 38 ILLVTSSRRPE-----HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          ILL+   +R        W +PGG V+  E       RE+ EE G+  +    L V +
Sbjct: 42 ILLI---KRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVD 95

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 28 ITTACVM----STLILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKL 81
          + T  ++    +  +L+      P       PGG VE  E  A  A+REV EE G+    
Sbjct: 11 LVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSG 70

Query: 82 GRSLGVFE 89
              G  E
Sbjct: 71 VTFCGTCE 78

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
            V      + W    GG E EE  + TA RE  EE  +
Sbjct: 22 FGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNL 60

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 28 ITTACVM----STLILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
          +T  C++    +  +++     R         +  PGG VE +E  A + +RE+ EE G+
Sbjct: 9  LTNICLIEDLETQRVVMQ---YRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL 65

Query: 78 LGKLGRSLGVFE 89
            +  + +G+  
Sbjct: 66 TIQNPQLVGIKN 77

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
           LLV    R        P G +EP E       REV EE G         G++    
Sbjct: 21 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC 77

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 38  ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90
           +LL   +  P    W +P G +E  E     A RE  EEA    ++     V+ +
Sbjct: 53  VLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL 107

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +L+   + R   + +PGG     E  +   +RE+ EE G+       L    
Sbjct: 29 VLVT--ASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHI 78

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 46.3 bits (110), Expect = 6e-08
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 28 ITTACVMSTL--ILLVTSSRRPE-HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRS 84
          +T ACV+      L+V  +   +  W  P G +E +E     A RE+ EE G+  +    
Sbjct: 6  VTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHF 65

Query: 85 LGVFEVR 91
          + + +  
Sbjct: 66 IRMHQWI 72

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 46.3 bits (110), Expect = 9e-08
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 38  ILLVTSSRRPE---------HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
           ILL+  S              W VPGG V+  E     A RE+ EE  +        GVF
Sbjct: 48  ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF 107

Query: 89  E 89
           +
Sbjct: 108 D 108

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 38 ILLVTSSRRPEH-------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
           LL+   RR E+       W +PGG V P+E       REV EE G+    G   G   
Sbjct: 22 FLLL---RRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVN 77

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
          +L++     P+ W    G VE  E     A+REV EE  +
Sbjct: 24 VLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTI 63

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 45 RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
          ++ +  +  GG +E  E P    +RE  EEAG+   L   + +   + 
Sbjct: 25 KKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKS 72

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 38  ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG--RSLGVFEVRPK 93
           +LL+     P    W +PGG V   E    + LRE  EE GV+        L  F    +
Sbjct: 58  VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDR 117

Query: 94  VP 95
            P
Sbjct: 118 DP 119

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 20 RCPTMALFITTACVM---STLILLVTSSRRPEH-----WIVPGGGVEPEEEPAATALREV 71
          R   M        V+      +LL     +        W   GG V+  E     A RE+
Sbjct: 17 RGSHMGASRLYTLVLVLQPQRVLLG---MKKRGFGAGRWNGFGGKVQEGETIEDGARREL 73

Query: 72 AEEAGV 77
           EE+G+
Sbjct: 74 QEESGL 79

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 17  SVRRCPTMALFITTACVMSTL--ILLVTSSRRPEH-----WIVPGGGVEPEEEPAATALR 69
              + P    F+T   ++     IL+V   +R  H     W +PGG +E +E  A   +R
Sbjct: 198 LWLKAPFKPNFVTVDALVIVNDHILMV---QRKAHPGKDLWALPGGFLECDETIAQAIIR 254

Query: 70  EVAEEAGV------LGKLGRSLGVF 88
           E+ EE  +      L    R   VF
Sbjct: 255 ELFEETNINLTHEQLAIAKRCEKVF 279

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 39  LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV 90
            L+        W   GG  + E++    A++E+ EE GV          F +
Sbjct: 60  FLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFAL 111

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 1   MSYDGPVHNHGLCHVDSVRRCPTMALFITTACVMSTLILLVTSSRRPE--HWIVPGGGVE 58
              D            +        +      V +  +L+V    +P      +PGG ++
Sbjct: 179 ALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIK 238

Query: 59  PEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
             E      LRE+ EE  +   L    G   
Sbjct: 239 QNETLVEGMLRELKEETRLKVPLPVLRGSIV 269

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)

Query: 53  PGGGVEPEEEPAATALREVAEEAG-------VLGKLGRSLGV--FEVRPKV 94
           PGG ++  E P   ALRE  EE         +LG+L        F V P +
Sbjct: 69  PGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVL 119

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 38 ILLVTSSRRPEH-------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV 87
           LL    +  ++       W + GGGVEP E       RE+ EE G    L      
Sbjct: 41 YLLC---KMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPW 94

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 40.7 bits (96), Expect = 9e-06
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 52 VPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          +P G +EP E+P   A RE+AE+ G+ G L   L  +
Sbjct: 64 IPAGLIEPGEDPLEAARRELAEQTGLSGDL-TYLFSY 99

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 52 VPGGGVEPEEEPAATALREVAEEAG 76
          +  GGVE  E+  A A RE+ EE G
Sbjct: 36 IVAGGVEKGEDLGAAAARELLEEVG 60

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 38 ILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEAG--VLGKLGRSLGVFE 89
           LL   + RP   +W VPGG V+ +E   A   R    E G  +    G+  GV++
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQ 87

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 52 VPGGGVEPEEEPAATALREVAEEAG 76
          VP G V+  E P A A RE+ EE G
Sbjct: 72 VPAGKVDEGETPEAAARRELREEVG 96

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
          +LL+  +  P    W + GG V+ +E     A R +AE  G+       +G F
Sbjct: 30 LLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAF 82

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 52  VPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
            P G ++  E P A ALRE+ EE G  G +       
Sbjct: 96  FPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAV 132

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 52  VPGGGVEPEEEPAATALREVAEEAG 76
              G ++P E     A RE+ EE G
Sbjct: 79  FSKGLIDPGESVYEAANRELKEEVG 103

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
          ++RPE       W  PGG VE  E P A+ +RE+ EE GV  +      +    
Sbjct: 46 TQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFAS 99

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 43  SSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
           +S  P    +  G +E  E     A RE  EEAG+
Sbjct: 85  TSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
          ++RP        W  PGG +EP E P A  +RE+AEE GV
Sbjct: 25 AQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 37  LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
           L  +    +    W +PGG V+P E+ +AT  RE  EEA  
Sbjct: 139 LQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALN 179

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 44 SRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGV 77
          +RR            PGG +E  E P    +RE+ EE G+
Sbjct: 21 TRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 39  LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG 76
             V  +   +      G ++ +E P     +E  EE G
Sbjct: 70  TWVNGNESGQLIESCAGLLDNDE-PEVCIRKEAIEETG 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.84
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.83
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.83
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.82
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.8
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.8
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.79
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.79
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.79
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.79
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.79
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.78
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.78
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.78
3f13_A	163	Putative nudix hydrolase family member; structural	99.78
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.78
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.77
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.77
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.77
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.77
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.77
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.77
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.76
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.76
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.76
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.76
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.76
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.76
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.75
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.75
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.75
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.75
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.75
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.74
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.74
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.74
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.74
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.73
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.73
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.73
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.73
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.73
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.73
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.72
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.71
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.71
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.71
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.71
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.71
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.71
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.7
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.7
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.69
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.69
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.69
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.69
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.68
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.67
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.67
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.66
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.66
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.66
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.65
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.62
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.6
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.6
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.59
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.53
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.49
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.47
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.46
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.45
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.43
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.38
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.35
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.32
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.27

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.84  E-value=1.6e-20  Score=116.82  Aligned_cols=64  Identities=31%  Similarity=0.521  Sum_probs=55.2

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         25 ALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+++.++++++++|||+||.  .|.|.||||++++|||+.+||.||++||||+.+...++++.+.+
T Consensus         4 ~~aag~vv~~~~~vLL~~r~--~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~   67 (134)
T 3i7u_A            4 EFSAGGVLFKDGEVLLIKTP--SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHY   67 (134)
T ss_dssp             EEEEEEEEEETTEEEEEECT--TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEeC--CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeE
Confidence            34566777889999999874  47999999999999999999999999999999988888776543

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.83  E-value=5.6e-20  Score=117.35  Aligned_cols=73  Identities=27%  Similarity=0.383  Sum_probs=62.1

Q ss_pred             CceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCC
Q psy11365         22 PTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV   94 (95)
Q Consensus        22 ~~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~   94 (95)
                      ....+.+.+++.+++++||++|...+|.|.||||++++|||+.+||+||++||||+.+...++++.+.++..+
T Consensus        20 ~~~~~~v~~ii~~~~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   92 (171)
T 3id9_A           20 NIMQVRVTGILIEDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDAS   92 (171)
T ss_dssp             --CEEEEEEEEEETTEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSS
T ss_pred             CceEEEEEEEEEECCEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCC
Confidence            3455666777778899999999776799999999999999999999999999999999888888888776543

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.83  E-value=9.7e-20  Score=112.70  Aligned_cols=71  Identities=27%  Similarity=0.361  Sum_probs=58.8

Q ss_pred             eeEEEEEEEEc---CCE--EEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCC
Q psy11365         24 MALFITTACVM---STL--ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV   94 (95)
Q Consensus        24 ~~~~~~~~~~~---~~~--vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~   94 (95)
                      ..+.+.+++..   +++  +||++|...++.|.||||++++|||+.+||+||++||||+.+....+++.+..+.++
T Consensus         8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   83 (139)
T 2yyh_A            8 PLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD   83 (139)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred             CeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence            34444555554   677  999999776667999999999999999999999999999999988899988876543

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.82  E-value=8.7e-20  Score=115.53  Aligned_cols=73  Identities=26%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             cCCceeEEEEEEEEcCCEEEEEEEeC--CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         20 RCPTMALFITTACVMSTLILLVTSSR--RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~vll~~r~~--~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      ......+.+.+++.++++|||++|.+  .+|.|.||||++++|||+.+||+||++||||+.+...++++.+....
T Consensus        24 ~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   98 (157)
T 4dyw_A           24 HTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHID   98 (157)
T ss_dssp             --CCCEEEEEEEEEETTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEE
T ss_pred             CCCCceeEEEEEEEECCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeec
Confidence            33445667777777789999999976  35899999999999999999999999999999998888888776543

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.80  E-value=6.1e-19  Score=109.30  Aligned_cols=67  Identities=21%  Similarity=0.240  Sum_probs=54.8

Q ss_pred             EEEEEEEEcCCEEEEEEEeC-----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         26 LFITTACVMSTLILLVTSSR-----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~-----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      .++++++.+++++||+||..     .+|.|.||||++++|||+.+||.||++||||+.+...++++.+.+..
T Consensus         7 ~~v~~vi~~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   78 (140)
T 3gwy_A            7 EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTY   78 (140)
T ss_dssp             EEEEEEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCC
T ss_pred             EEEEEEEEeCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEe
Confidence            34455566789999999875     45799999999999999999999999999999999888888876543

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.80  E-value=4.1e-19  Score=114.65  Aligned_cols=70  Identities=23%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+...+++.+++.+++++||++|.+.  +|.|.||||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus        21 m~~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~   92 (176)
T 3q93_A           21 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVF   92 (176)
T ss_dssp             --CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEE
Confidence            34456666667777899999998653  58999999999999999999999999999999988888888754

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.79  E-value=7.3e-19  Score=110.16  Aligned_cols=67  Identities=19%  Similarity=0.277  Sum_probs=57.3

Q ss_pred             eEEEEEEEEcCCEEEEEEEeC-CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         25 ALFITTACVMSTLILLVTSSR-RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~-~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .+.+.+++.+++++||++|.. .++.|.||||++++|||+.+||+||++||||+.+...++++.+.+.
T Consensus         5 ~~~v~~ii~~~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~   72 (153)
T 3shd_A            5 HVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWI   72 (153)
T ss_dssp             EEEEEEEEEETTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
T ss_pred             ceEEEEEEEeCCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEe
Confidence            455666677789999999863 3478999999999999999999999999999999888888877544

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.79  E-value=4.9e-19  Score=114.94  Aligned_cols=59  Identities=32%  Similarity=0.449  Sum_probs=52.9

Q ss_pred             CEEEEEEEe---------CCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCC
Q psy11365         36 TLILLVTSS---------RRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKV   94 (95)
Q Consensus        36 ~~vll~~r~---------~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~   94 (95)
                      ++|||++|.         ..+|.|.||||++++|||+.+||+||++||||+.+...++++++..+.++
T Consensus        46 ~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~  113 (187)
T 3i9x_A           46 LHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRD  113 (187)
T ss_dssp             EEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSS
T ss_pred             CEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccC
Confidence            489999993         35689999999999999999999999999999999999999998877654

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.79  E-value=1.5e-18  Score=108.99  Aligned_cols=67  Identities=27%  Similarity=0.377  Sum_probs=56.5

Q ss_pred             eeEEEEEEEEc-CCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         24 MALFITTACVM-STLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        24 ~~~~~~~~~~~-~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ....+.+++.+ ++++||++|...    +|.|.||||++++|||+.+||.||++||||+.+...++++.+..
T Consensus         7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   78 (153)
T 3grn_A            7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNF   78 (153)
T ss_dssp             EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEE
T ss_pred             eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEE
Confidence            45555556665 789999999763    48999999999999999999999999999999988888887654

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=109.72  Aligned_cols=68  Identities=28%  Similarity=0.431  Sum_probs=56.5

Q ss_pred             eeEEEEEEEE-cCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         24 MALFITTACV-MSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        24 ~~~~~~~~~~-~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      ...++.+++. .++++||++|.+.  +|.|.||||+++.|||+.+||+||++||||+.+...++++.+...
T Consensus        19 ~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~   89 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG   89 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS
T ss_pred             eEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC
Confidence            3344444444 4789999998764  589999999999999999999999999999999988988887653

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.78  E-value=1.1e-18  Score=117.00  Aligned_cols=76  Identities=25%  Similarity=0.306  Sum_probs=62.4

Q ss_pred             cCCceeEEEEEEEE---c-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCC
Q psy11365         20 RCPTMALFITTACV---M-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK   93 (95)
Q Consensus        20 ~~~~~~~~~~~~~~---~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~   93 (95)
                      .++...+.+.++++   + +++|||++|...  +|.|.||||++++|||+.+||.||++||||+.+.....++++..+.+
T Consensus         8 ~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r   87 (226)
T 2fb1_A            8 SNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDR   87 (226)
T ss_dssp             TSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTS
T ss_pred             cCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCCCc
Confidence            34445556666665   2 469999998753  47999999999999999999999999999999998899999987776


Q ss_pred             CC
Q psy11365         94 VP   95 (95)
Q Consensus        94 ~p   95 (95)
                      +|
T Consensus        88 ~~   89 (226)
T 2fb1_A           88 DP   89 (226)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.78  E-value=2.5e-18  Score=108.03  Aligned_cols=69  Identities=29%  Similarity=0.408  Sum_probs=57.6

Q ss_pred             CceeEEEEEEEEc-CCEEEEEEEeC------CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         22 PTMALFITTACVM-STLILLVTSSR------RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        22 ~~~~~~~~~~~~~-~~~vll~~r~~------~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.....+.+++.+ ++++||++|.+      .+|.|.||||++++|||+.+||.||++||||+.+...++++.+..
T Consensus        10 ~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~   85 (159)
T 1sjy_A           10 PVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLG   85 (159)
T ss_dssp             CCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEE
T ss_pred             CeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEec
Confidence            3444555556665 68999999975      458999999999999999999999999999999988888887764

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.78  E-value=2.6e-18  Score=111.89  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=58.2

Q ss_pred             CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +....+.+.+++.++++|||++|...  +|.|.||||++++|||+.+||+||++||||+.+...++++.+..
T Consensus        36 ~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~  107 (189)
T 3cng_A           36 YQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL  107 (189)
T ss_dssp             CCCCEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEE
T ss_pred             CCCCceEEEEEEEeCCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEec
Confidence            33445566667777899999999763  57999999999999999999999999999999887777776554

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.78  E-value=1.1e-18  Score=111.75  Aligned_cols=67  Identities=22%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             ceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         23 TMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        23 ~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      ....++++++.+++++||++|+  +|.|.||||++++|||+.+||.||++||||+.+....+++.+.++
T Consensus        14 ~~~~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~   80 (163)
T 3f13_A           14 DLARRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP   80 (163)
T ss_dssp             SCEEEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECS
T ss_pred             CceEEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecC
Confidence            3455566666678899999874  589999999999999999999999999999999888888877654

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.78  E-value=1.2e-18  Score=108.90  Aligned_cols=65  Identities=25%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         25 ALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .+.+.+++.+++++||++|.+.  ++.|.||||++++|||+.+||+||++||||+.+...++++.+.
T Consensus         8 ~~~v~~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   74 (153)
T 2b0v_A            8 NVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYH   74 (153)
T ss_dssp             EEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred             CEEEEEEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEE
Confidence            3455556667899999998654  4689999999999999999999999999999998888888764

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.77  E-value=7.7e-19  Score=111.00  Aligned_cols=60  Identities=25%  Similarity=0.357  Sum_probs=51.6

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365         25 ALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL   85 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~   85 (95)
                      ..++.+++.+++++||++|+. +|.|.||||++++|||+.+||+||++||||+.+.....+
T Consensus         6 ~~~v~~vi~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   65 (159)
T 3f6a_A            6 HFTVSVFIVCKDKVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI   65 (159)
T ss_dssp             CEEEEEEEEETTEEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCC
T ss_pred             eEEEEEEEEECCEEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccc
Confidence            445666667789999999854 689999999999999999999999999999998766555

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.77  E-value=2.7e-18  Score=112.70  Aligned_cols=58  Identities=62%  Similarity=1.094  Sum_probs=52.7

Q ss_pred             CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      ++++||++|.+.+|.|.||||++++|||+++||+||++||||+.+...++++.+.+..
T Consensus        53 ~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~  110 (194)
T 2fvv_A           53 EEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE  110 (194)
T ss_dssp             CCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT
T ss_pred             CCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC
Confidence            5799999987777999999999999999999999999999999999888888887543

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.77  E-value=2.6e-18  Score=113.36  Aligned_cols=70  Identities=24%  Similarity=0.345  Sum_probs=58.9

Q ss_pred             cCCceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         20 RCPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .++...+.+.+++.+++++||++|. .+|.|.||||++++|||+.+||.||++||||+.+...++++++..
T Consensus        63 ~~~~~~~~v~~vv~~~~~vLLv~r~-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~  132 (205)
T 3q1p_A           63 GYQTPKVDIRAVVFQNEKLLFVKEK-SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDK  132 (205)
T ss_dssp             SSCCCEEEEEEEEEETTEEEEEEC----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEH
T ss_pred             CCCCCcceEEEEEEECCEEEEEEEc-CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEec
Confidence            3455566777777788999999985 468999999999999999999999999999999998888888764

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.77  E-value=1.3e-18  Score=110.45  Aligned_cols=73  Identities=26%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             cCCceeEEEEEEEEcCC--EEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         20 RCPTMALFITTACVMST--LILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      +.....+++.+++.+++  ++||++|...  .|.|.||||++++|||+.+||.||++||||+.+...++++.+....
T Consensus         5 r~~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   81 (161)
T 3exq_A            5 RTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFD   81 (161)
T ss_dssp             SCCCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEEC
T ss_pred             ccCCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEeccc
Confidence            33445666666776655  9999998753  3689999999999999999999999999999999888888877554

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.77  E-value=1.9e-18  Score=109.01  Aligned_cols=54  Identities=39%  Similarity=0.535  Sum_probs=47.3

Q ss_pred             CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      +.++||+||+..++.|.||||++++|||+.+||.||++||||+.+.....++.+
T Consensus        23 ~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~   76 (155)
T 3u53_A           23 AIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGF   76 (155)
T ss_dssp             SEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred             CcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeE
Confidence            348999999877789999999999999999999999999999988766665543

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.77  E-value=1.7e-18  Score=112.90  Aligned_cols=64  Identities=30%  Similarity=0.433  Sum_probs=54.7

Q ss_pred             EEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         27 FITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      ++.+++.++++|||++|. .+|.|.||||++++|||+.+||.||++||||+.+...++++.+...
T Consensus         6 v~~~vi~~~~~vLL~~r~-~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~   69 (188)
T 3fk9_A            6 VTNCIVVDHDQVLLLQKP-RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMV   69 (188)
T ss_dssp             EEEEEEEETTEEEEEECT-TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEeC-CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEE
Confidence            445556678999999984 5789999999999999999999999999999999887777776543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.76  E-value=4.4e-18  Score=103.28  Aligned_cols=63  Identities=27%  Similarity=0.296  Sum_probs=53.4

Q ss_pred             EEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         27 FITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        27 ~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .+.+++.+ ++++||+||..  |.|.||||++++|||+.+||.||++||||+.+...++++.+.+.
T Consensus         4 ~~~~vi~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~   67 (126)
T 1vcd_A            4 GAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYV   67 (126)
T ss_dssp             EEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEe
Confidence            44555555 67899999854  89999999999999999999999999999999888888877543

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.76  E-value=4.2e-18  Score=112.42  Aligned_cols=67  Identities=27%  Similarity=0.395  Sum_probs=58.4

Q ss_pred             CCceeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         21 CPTMALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ++...+.+.+++++++++||++|.  +|.|.||||++++|||+.+||.||++||||+.+....++++++
T Consensus        66 y~~~~~~v~~vv~~~~~vLLvrr~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~  132 (206)
T 3o8s_A           66 YQTPKLDTRAAIFQEDKILLVQEN--DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILD  132 (206)
T ss_dssp             --CCEEEEEEEEEETTEEEEEECT--TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             CCCCCccEEEEEEECCEEEEEEec--CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEe
Confidence            445566777777788999999986  7899999999999999999999999999999999888888876

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.76  E-value=6.1e-18  Score=105.40  Aligned_cols=66  Identities=23%  Similarity=0.331  Sum_probs=55.0

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         25 ALFITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ..++++++..++++||++|...   +|.|.||||++++|||+.+||.||++||||+.+....+++.+.+
T Consensus        22 ~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~   90 (153)
T 3ees_A           22 IPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTH   90 (153)
T ss_dssp             EEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEE
Confidence            3445555566899999998754   48999999999999999999999999999999888777776543

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.76  E-value=1.2e-18  Score=110.08  Aligned_cols=58  Identities=31%  Similarity=0.389  Sum_probs=49.6

Q ss_pred             EEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365         27 FITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL   85 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~   85 (95)
                      ++.+++.+++++||++|.. +|.|.||||++++|||+.+||.||++||||+.+.....+
T Consensus         3 ~~~~vi~~~~~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   60 (156)
T 1k2e_A            3 VTSGVLVENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT   60 (156)
T ss_dssp             EEEEECEETTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCC
T ss_pred             EEEEEEEECCEEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccce
Confidence            4455666789999998854 689999999999999999999999999999998766553

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.76  E-value=4.1e-18  Score=106.94  Aligned_cols=63  Identities=25%  Similarity=0.357  Sum_probs=54.3

Q ss_pred             eeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         24 MALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        24 ~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ....+.+++.+++++||++|   +|.|.||||++++|||+.+||.||++||||+.+...++++.+.
T Consensus        18 ~~~~~~~ii~~~~~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~   80 (154)
T 2pqv_A           18 FGVRATALIVQNHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVE   80 (154)
T ss_dssp             EEEEEEECCEETTEEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             EeEEEEEEEEECCEEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEe
Confidence            44566666678899999998   6899999999999999999999999999999988777776654

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.75  E-value=1.5e-17  Score=105.49  Aligned_cols=62  Identities=27%  Similarity=0.374  Sum_probs=50.0

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCC----CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEE
Q psy11365         25 ALFITTACVMSTLILLVTSSRR----PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLG   86 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~----~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~   86 (95)
                      ..++++++.+++++||++|...    +|.|.||||++++|||+.+||.||++||||+.+...+++.
T Consensus        28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~   93 (165)
T 3oga_A           28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITP   93 (165)
T ss_dssp             EEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceee
Confidence            3344445556889999998743    4899999999999999999999999999999987665543

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.75  E-value=1.1e-17  Score=113.00  Aligned_cols=72  Identities=24%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             eeEEEEEEEE--cC--CEEEEEEEeCC--CCCEEeceeecCC--CCCHHHHHHHHHHHHhCCceeeceeEEEEecCCCCC
Q psy11365         24 MALFITTACV--MS--TLILLVTSSRR--PEHWIVPGGGVEP--EEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP   95 (95)
Q Consensus        24 ~~~~~~~~~~--~~--~~vll~~r~~~--~g~w~~PgG~ie~--gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~p   95 (95)
                      ..+.+.++++  ++  ++|||++|...  +|.|.||||++++  |||+.+||.||++||||+.+.....++++..+.++|
T Consensus        21 p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~~  100 (240)
T 3gz5_A           21 QLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDA  100 (240)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSST
T ss_pred             CccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCccCC
Confidence            3444444444  34  48999998753  4899999999999  999999999999999999999999999999887765

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.75  E-value=1.3e-17  Score=102.56  Aligned_cols=45  Identities=38%  Similarity=0.637  Sum_probs=40.8

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      +++||+||+..+|.|.||||++++|||+.+||.||++||||+.+.
T Consensus        18 ~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   62 (138)
T 1ktg_A           18 IEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE   62 (138)
T ss_dssp             EEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGG
T ss_pred             cEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence            589999987666799999999999999999999999999999543

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.75  E-value=7.8e-18  Score=115.73  Aligned_cols=76  Identities=29%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             ccccccCCceeEEEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         15 VDSVRRCPTMALFITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+....++.....+.+++.+++++||+||... +|.|.||||++++|||+++||.||++||||+.+...++++.+..
T Consensus       130 ~C~~~~yp~~~~~viv~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~  206 (269)
T 1vk6_A          130 HCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW  206 (269)
T ss_dssp             SSSCEECCCCEEEEEEEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred             CCCCEecCCCCcEEEEEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence            34444556555666667777899999999764 48999999999999999999999999999999998888887654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.75  E-value=1.9e-17  Score=101.96  Aligned_cols=64  Identities=25%  Similarity=0.434  Sum_probs=53.5

Q ss_pred             EEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++++++.+++++||++|...   +|.|.||||+++.|||+.+||.||++||||+.+....+++.+.+
T Consensus        11 ~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~   77 (140)
T 2rrk_A           11 VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQR   77 (140)
T ss_dssp             EEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEE
T ss_pred             EEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEE
Confidence            33444567889999998653   58999999999999999999999999999999887777776643

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.74  E-value=1.4e-17  Score=104.69  Aligned_cols=66  Identities=26%  Similarity=0.331  Sum_probs=53.5

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEec
Q psy11365         25 ALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFEV   90 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~~   90 (95)
                      ...+.+++.+ ++++||++|...  +|.|.||||++++|||+.+||.||++||||+.+.  ...+++.+.+
T Consensus        18 ~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   88 (160)
T 1rya_A           18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQH   88 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEE
T ss_pred             EEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeE
Confidence            3455556665 789999998763  5899999999999999999999999999999853  5666666643

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.74  E-value=6.7e-18  Score=105.92  Aligned_cols=70  Identities=20%  Similarity=0.213  Sum_probs=54.5

Q ss_pred             CCceeEEEEEEEEcCCE----EEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         21 CPTMALFITTACVMSTL----ILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~~~----vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .......+.+++.++++    +||++|...  +| |.||||++++|||+.+||.||++||||+.+...++++.+...
T Consensus         4 ~~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   79 (155)
T 2b06_A            4 SQLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWP   79 (155)
T ss_dssp             GGCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEE
T ss_pred             CcCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeec
Confidence            33455666667777776    888888653  35 899999999999999999999999999999888888876654

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.74  E-value=5.7e-18  Score=108.76  Aligned_cols=69  Identities=23%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             CceeEEEEEEEEc-CCEEEEEEEeCC----CCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         22 PTMALFITTACVM-STLILLVTSSRR----PEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        22 ~~~~~~~~~~~~~-~~~vll~~r~~~----~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ......+.+++.+ ++++||++|...    +|.|.| |||++++|||+.+||+||++||||+.+.....++.+.+
T Consensus        34 ~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~  108 (180)
T 2fkb_A           34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYF  108 (180)
T ss_dssp             TCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEE
T ss_pred             CceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEe
Confidence            3444455555554 679999988653    578999 99999999999999999999999998777777766543

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.74  E-value=3.5e-18  Score=111.02  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCC----CCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeec-eeEEEE
Q psy11365         25 ALFITTACVM-STLILLVTSSRR----PEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLG-RSLGVF   88 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~----~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~-~~~~~~   88 (95)
                      ...+.+++.+ ++++||++|...    +|.|.| |||++++|||+.+||+||++||||+.+... .+++.+
T Consensus        32 ~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~  102 (190)
T 1hzt_A           32 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF  102 (190)
T ss_dssp             EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTC
T ss_pred             EEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeE
Confidence            3455555554 689999998642    689999 999999999999999999999999998766 555443

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.73  E-value=2e-17  Score=102.71  Aligned_cols=62  Identities=26%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             EEEEEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         26 LFITTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        26 ~~~~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ..+.+++.+  ++++||++|  .+|.|.||||++++|||+.+||.||++||||+.+.....++.+.
T Consensus        19 ~~~~~vi~~~~~~~vLl~~r--~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   82 (148)
T 2azw_A           19 YAAYIIVSKPENNTMVLVQA--PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEAD   82 (148)
T ss_dssp             CEEEEECEEGGGTEEEEEEC--TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred             eEEEEEEECCCCCeEEEEEc--CCCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEE
Confidence            344444444  489999997  34899999999999999999999999999999998877777653

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.73  E-value=7.5e-18  Score=106.13  Aligned_cols=50  Identities=30%  Similarity=0.573  Sum_probs=44.4

Q ss_pred             EEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         31 ACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        31 ~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      ++..++++||++|...+|.|.||||++++|||+.+||+||++||||+.+.
T Consensus        21 i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   70 (165)
T 1f3y_A           21 LMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             EECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred             EECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence            33347899999997667899999999999999999999999999999864

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.73  E-value=3.1e-17  Score=104.73  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             eEEEEEEEE-cCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         25 ALFITTACV-MSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        25 ~~~~~~~~~-~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      ...+.++++ .++++||++|.. ++.|.||||++++|||+.+||.||++||||+.+...++++.+
T Consensus         8 ~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~   71 (164)
T 2kdv_A            8 RPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAST   71 (164)
T ss_dssp             EEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred             CcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEe
Confidence            344555555 478999998854 789999999999999999999999999999998877777775

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.73  E-value=1.6e-17  Score=103.69  Aligned_cols=47  Identities=26%  Similarity=0.287  Sum_probs=42.2

Q ss_pred             CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365         35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG   82 (95)
Q Consensus        35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~   82 (95)
                      ++++||++|.. +|.|.||||++++|||+.+||.||++||||+.+...
T Consensus        19 ~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~   65 (149)
T 3son_A           19 NYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVK   65 (149)
T ss_dssp             SEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCC
T ss_pred             CeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccc
Confidence            46899999865 489999999999999999999999999999987753

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.73  E-value=2.4e-17  Score=102.21  Aligned_cols=55  Identities=25%  Similarity=0.357  Sum_probs=46.8

Q ss_pred             EEEEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         27 FITTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        27 ~~~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      .+.+++++  ++++||++|...+|.|.||||++++|||+.+||.||++||||+.+..
T Consensus        11 ~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~   67 (150)
T 2o1c_A           11 SILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA   67 (150)
T ss_dssp             EEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHH
T ss_pred             EEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccc
Confidence            34444444  48999999876678999999999999999999999999999998765

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.73  E-value=1.2e-17  Score=104.39  Aligned_cols=57  Identities=30%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             EEcCCEEEEEEEeCCC---CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         32 CVMSTLILLVTSSRRP---EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        32 ~~~~~~vll~~r~~~~---g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      +..++++||+++.+.+   +.|.||||++++|||+.+||.||++||||+.+.....++.+
T Consensus        13 ~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~   72 (145)
T 2w4e_A           13 VTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGF   72 (145)
T ss_dssp             EETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCB
T ss_pred             EcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecC
Confidence            3457899888765432   48999999999999999999999999999988766665543

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.72  E-value=4.4e-17  Score=106.77  Aligned_cols=64  Identities=33%  Similarity=0.514  Sum_probs=51.5

Q ss_pred             eeEEEEEEEEc--CCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365         24 MALFITTACVM--STLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV   87 (95)
Q Consensus        24 ~~~~~~~~~~~--~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   87 (95)
                      ..+.+.++++.  ++++||+||+.. +|.|.||||++++|||+.+||+||++||||+.+...++++.
T Consensus        25 ~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~   91 (199)
T 3h95_A           25 HQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI   91 (199)
T ss_dssp             -CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             ccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEE
Confidence            33444444444  479999998542 58999999999999999999999999999999987777775

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.71  E-value=2.4e-17  Score=101.99  Aligned_cols=59  Identities=34%  Similarity=0.510  Sum_probs=48.4

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeece
Q psy11365         25 ALFITTACVM-STLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGR   83 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~   83 (95)
                      ..++.+++.+ ++++||++|...   +|.|.||||+++.||++.+||.||++||||+.+...+
T Consensus         8 ~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~   70 (144)
T 3r03_A            8 LLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC   70 (144)
T ss_dssp             EEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGG
T ss_pred             eEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccc
Confidence            3344444444 789999998753   4899999999999999999999999999999887653

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.71  E-value=4.3e-17  Score=104.13  Aligned_cols=63  Identities=27%  Similarity=0.339  Sum_probs=52.2

Q ss_pred             EEEEEEEcCCEEEEEEEeC---CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMSTLILLVTSSR---RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~---~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+.+++.+++++||+++.+   .++.|.||||++++|||+.+||.||++||||+ +.....++.+..
T Consensus        36 ~v~vii~~~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~  101 (170)
T 1v8y_A           36 AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFV  101 (170)
T ss_dssp             EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEES
T ss_pred             eEEEEEEECCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEec
Confidence            3444444588999998755   34799999999999999999999999999999 888888877653

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.71  E-value=3.6e-17  Score=106.44  Aligned_cols=64  Identities=27%  Similarity=0.352  Sum_probs=51.8

Q ss_pred             EEEEEEEcCC--EEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMST--LILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~--~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++.+++..++  ++||++|..    .+|.|.||||++++|||+.+||+||++||||+.+...++++.+.+
T Consensus        37 ~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~  106 (194)
T 1nqz_A           37 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDD  106 (194)
T ss_dssp             EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCC
T ss_pred             EEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccC
Confidence            3333444566  899999864    368999999999999999999999999999999888887776653

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.71  E-value=3.1e-17  Score=103.41  Aligned_cols=60  Identities=30%  Similarity=0.485  Sum_probs=48.8

Q ss_pred             eEEEEEEEE-cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeecee
Q psy11365         25 ALFITTACV-MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRS   84 (95)
Q Consensus        25 ~~~~~~~~~-~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~   84 (95)
                      ...+.+++. .++++||++|...   +|.|.||||++++||++.+||.||++||||+.+...++
T Consensus        29 ~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~   92 (158)
T 3hhj_A           29 LIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNL   92 (158)
T ss_dssp             EEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGC
T ss_pred             EEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceE
Confidence            334444444 4789999998753   48999999999999999999999999999999876543

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.71  E-value=4.8e-17  Score=106.90  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             EEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         28 ITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        28 ~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +++++.+++++||+++.+.   ++.|+||||++++|||+++||+||++||||+.+.....++.+..
T Consensus        52 v~vl~~~~~~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~  117 (198)
T 1vhz_A           52 VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSM  117 (198)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEC
T ss_pred             EEEEEEECCEEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeC
Confidence            3344445559999987653   35899999999999999999999999999999988888887763

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.71  E-value=3.9e-18  Score=103.63  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             EEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         29 TTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        29 ~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ++++..++++||+||...   +|.|.||||++++|||+.+||.||++||||+.+...+.++.+.
T Consensus         9 ~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~   72 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLE   72 (129)
T ss_dssp             EECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCB
T ss_pred             EEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEE
Confidence            334456789999998754   4899999999999999999999999999999887666655544

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.70  E-value=7.2e-17  Score=112.39  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             CCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeece
Q psy11365         21 CPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGR   83 (95)
Q Consensus        21 ~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~   83 (95)
                      ++.....+.+++.+++++||++|...  +|.|.||||++++|||+++||.||++||||+.+...+
T Consensus       199 ~~~~~~~v~~vi~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~  263 (341)
T 2qjo_A          199 YAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPV  263 (341)
T ss_dssp             SCCCEEEEEEEEEETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHH
T ss_pred             CCCCceEEEEEEEeCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCcccccc
Confidence            44556677777778899999998653  5899999999999999999999999999999887443

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.70  E-value=2.1e-17  Score=106.50  Aligned_cols=63  Identities=32%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             EEEEEEE-cCCEEEEEEEeC---CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         27 FITTACV-MSTLILLVTSSR---RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        27 ~~~~~~~-~~~~vll~~r~~---~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .+.++++ .++++||++|.+   .+|.|.||||++++|||+.+||.||++||||+.+...+.++.+.
T Consensus        43 ~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~  109 (182)
T 2yvp_A           43 ASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFH  109 (182)
T ss_dssp             EEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBC
T ss_pred             EEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEe
Confidence            3333444 578999999865   35799999999999999999999999999999887766666543

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.69  E-value=1.9e-16  Score=110.86  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=53.1

Q ss_pred             cCCceeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         20 RCPTMALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      .++.....+.+++.+++++||++|...  +|.|.||||++++|||+++||.||++||||+.+..
T Consensus       203 ~~~~~~~~v~~vv~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~  266 (352)
T 2qjt_B          203 PFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTH  266 (352)
T ss_dssp             SSCCEEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCH
T ss_pred             CCCCCceEEEEEEEECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCccc
Confidence            344556677777778899999999764  47999999999999999999999999999998764

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.69  E-value=3.1e-17  Score=109.44  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             eeEEEEEEEEcCCEEEEEEEeCCC------CCEEe-ceeecCCCCC------HHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         24 MALFITTACVMSTLILLVTSSRRP------EHWIV-PGGGVEPEEE------PAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        24 ~~~~~~~~~~~~~~vll~~r~~~~------g~w~~-PgG~ie~gE~------~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ..++..+++.+++++||++|...+      |.|.| |||++++|||      +++||+||++||||+.+....+++.+..
T Consensus        67 ~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~  146 (211)
T 3e57_A           67 KQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINS  146 (211)
T ss_dssp             EEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEC
T ss_pred             cceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEec
Confidence            344555666678999999997643      68998 9999999998      4999999999999999999999998876


Q ss_pred             C
Q psy11365         91 R   91 (95)
Q Consensus        91 ~   91 (95)
                      .
T Consensus       147 ~  147 (211)
T 3e57_A          147 S  147 (211)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.69  E-value=9.5e-17  Score=102.27  Aligned_cols=65  Identities=22%  Similarity=0.169  Sum_probs=51.3

Q ss_pred             eEEEEEEEE-cCCEEEEEEEeCC----CCCEE-eceeecCCCCCHHHHHHHHHHHHhCCceeec--eeEEEEe
Q psy11365         25 ALFITTACV-MSTLILLVTSSRR----PEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGKLG--RSLGVFE   89 (95)
Q Consensus        25 ~~~~~~~~~-~~~~vll~~r~~~----~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~--~~~~~~~   89 (95)
                      +..+.+++. .++++||++|...    +|.|. ||||++++|||+.+||.||++||||+.+...  ..++.+.
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~  106 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFS  106 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEEC
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEe
Confidence            444444444 5789999987542    58998 9999999999999999999999999998763  4555554

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.69  E-value=2.7e-16  Score=107.92  Aligned_cols=74  Identities=26%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             CceeEEEEEEEE--cCC----EEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee--eceeEEEEecC
Q psy11365         22 PTMALFITTACV--MST----LILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK--LGRSLGVFEVR   91 (95)
Q Consensus        22 ~~~~~~~~~~~~--~~~----~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~--~~~~~~~~~~~   91 (95)
                      +...+.+.++++  +++    +|||++|...  +|.|.||||++++|||+.+||.||++||||+.+.  ....++.+..+
T Consensus        36 ~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~  115 (273)
T 2fml_A           36 EKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRP  115 (273)
T ss_dssp             CCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCT
T ss_pred             CCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCC
Confidence            344444444444  333    8999999764  4899999999999999999999999999997654  45667788777


Q ss_pred             CCCC
Q psy11365         92 PKVP   95 (95)
Q Consensus        92 ~~~p   95 (95)
                      .++|
T Consensus       116 ~r~~  119 (273)
T 2fml_A          116 DRDP  119 (273)
T ss_dssp             TSST
T ss_pred             CCCC
Confidence            7664

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.68  E-value=2.3e-16  Score=103.03  Aligned_cols=55  Identities=20%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             CCEEEEEEEeC---------CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         35 STLILLVTSSR---------RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        35 ~~~vll~~r~~---------~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++++||+++.+         +++.|+||||+++ |||+.+||+||++||||+.+.....++.+..
T Consensus        57 ~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~  120 (191)
T 3o6z_A           57 KKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYM  120 (191)
T ss_dssp             TTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEES
T ss_pred             CCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEe
Confidence            58999998876         5578999999999 9999999999999999999887888877644

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.67  E-value=2.5e-16  Score=104.25  Aligned_cols=55  Identities=27%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             CCEEEEEEEeCC--------CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         35 STLILLVTSSRR--------PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        35 ~~~vll~~r~~~--------~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ++++||+++.+.        ++.|+||||++++|||+++||+||++||||+.+.....++.+.
T Consensus        69 ~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~  131 (209)
T 1g0s_A           69 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFL  131 (209)
T ss_dssp             TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_pred             CCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEe
Confidence            679999887653        3579999999999999999999999999999988777777663

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.67  E-value=2.6e-16  Score=102.86  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=47.0

Q ss_pred             CceeEEEEEEEEc-C-CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365         22 PTMALFITTACVM-S-TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVL   78 (95)
Q Consensus        22 ~~~~~~~~~~~~~-~-~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~   78 (95)
                      ...++.+.+++++ + +++||+++. ..|.|.||||++++|||+.+||+||++||||+.
T Consensus        42 ~~~h~~~~~vv~~~~~~~vLL~~r~-~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~   99 (197)
T 3fcm_A           42 TIAHLTSSAFAVNKERNKFLMIHHN-IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVK   99 (197)
T ss_dssp             SSEEEEEEEEEECTTSCEEEEEEET-TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred             CCccEEEEEEEEECCCCEEEEEEec-CCCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence            3455566666665 3 499999885 568999999999999999999999999999997

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.66  E-value=1.7e-16  Score=108.96  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=47.1

Q ss_pred             EEEEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         27 FITTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        27 ~~~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      ++++++.+  ++++||++|.+.+|.|.||||++++|||+.+||+||++||||+.+..
T Consensus       103 ~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~  159 (271)
T 2a6t_A          103 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS  159 (271)
T ss_dssp             EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             eEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee
Confidence            33445554  37999999977779999999999999999999999999999998764

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.66  E-value=2.2e-16  Score=99.32  Aligned_cols=52  Identities=31%  Similarity=0.406  Sum_probs=43.1

Q ss_pred             CCEEEEEEEeCC---CCCEEeceeecCCCCCHH-HHHHHHHHHHhC-CceeeceeEE
Q psy11365         35 STLILLVTSSRR---PEHWIVPGGGVEPEEEPA-ATALREVAEEAG-VLGKLGRSLG   86 (95)
Q Consensus        35 ~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~-~aa~REl~EE~G-l~~~~~~~~~   86 (95)
                      ++++||+||...   +|.|+||||+++.||++. +||.||++|||| +.+.....++
T Consensus        33 ~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~   89 (155)
T 1x51_A           33 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLG   89 (155)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECC
T ss_pred             CCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecc
Confidence            478999998653   489999999999999996 999999999999 7665444443

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.66  E-value=3.3e-16  Score=103.26  Aligned_cols=61  Identities=26%  Similarity=0.359  Sum_probs=51.1

Q ss_pred             EEEEEE-cCCEEEEEEEeCC---CCCEEeceeecC-CCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         28 ITTACV-MSTLILLVTSSRR---PEHWIVPGGGVE-PEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        28 ~~~~~~-~~~~vll~~r~~~---~g~w~~PgG~ie-~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      +.++++ .++++||+++.+.   ++.|.||||+++ +|||+.+||+||++||||+.+....+++.+
T Consensus        46 v~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~  111 (207)
T 1mk1_A           46 VAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL  111 (207)
T ss_dssp             EEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE
Confidence            333444 5789999988653   368999999999 999999999999999999999888877765

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.8e-17  Score=100.40  Aligned_cols=45  Identities=31%  Similarity=0.502  Sum_probs=40.9

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL   81 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~   81 (95)
                      +++||++|. .+|.|.||||++++|||+.+||.||++||||+.+..
T Consensus        17 ~~vLl~~r~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   61 (146)
T 2jvb_A           17 SKILLVQGT-ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD   61 (146)
T ss_dssp             SEEEEECCS-SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred             CEEEEEEEc-CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence            899999874 468999999999999999999999999999998763

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.62  E-value=1.4e-15  Score=100.65  Aligned_cols=64  Identities=27%  Similarity=0.346  Sum_probs=48.9

Q ss_pred             eEEEEEEEEcC---CEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         25 ALFITTACVMS---TLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        25 ~~~~~~~~~~~---~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      ++.+.+++.++   +++||+++.+.   ++.|+||||++++|||+++||+||++||||+.+....+++.+
T Consensus        63 av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~  132 (212)
T 2dsc_A           63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAV  132 (212)
T ss_dssp             EEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCE
T ss_pred             EEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccE
Confidence            44444444443   48999886553   358999999999999999999999999999988766655433

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.60  E-value=5.5e-15  Score=104.52  Aligned_cols=56  Identities=30%  Similarity=0.423  Sum_probs=48.0

Q ss_pred             CEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         36 TLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        36 ~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      .+|||++|. ..|.|.||||++++|||+.+||+||++||||+.+....+++.+.+..
T Consensus        38 ~~vLLv~r~-~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~   93 (364)
T 3fjy_A           38 IEVCIVHRP-KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPL   93 (364)
T ss_dssp             EEEEEEEET-TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---
T ss_pred             eEEEEEEcC-CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEec
Confidence            389999984 45899999999999999999999999999999998888888766543

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.60  E-value=3.1e-15  Score=99.99  Aligned_cols=43  Identities=19%  Similarity=0.021  Sum_probs=37.7

Q ss_pred             CCCEEeceeecCC-CCCHHHHHHHHHHHHhCCce--eeceeEEEEe
Q psy11365         47 PEHWIVPGGGVEP-EEEPAATALREVAEEAGVLG--KLGRSLGVFE   89 (95)
Q Consensus        47 ~g~w~~PgG~ie~-gE~~~~aa~REl~EE~Gl~~--~~~~~~~~~~   89 (95)
                      ++.|+||+|++++ |||+++||+||++||||+.+  .....++.+.
T Consensus        94 ~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~  139 (218)
T 3q91_A           94 GVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYW  139 (218)
T ss_dssp             CEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEE
T ss_pred             CeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEe
Confidence            4689999999999 99999999999999999998  5666666654

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.59  E-value=1.4e-15  Score=100.83  Aligned_cols=47  Identities=21%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             cCCEEEEEEEeCCCCCEEeceeecCCCC-CHHHHHHHHHHHHhCCceeec
Q psy11365         34 MSTLILLVTSSRRPEHWIVPGGGVEPEE-EPAATALREVAEEAGVLGKLG   82 (95)
Q Consensus        34 ~~~~vll~~r~~~~g~w~~PgG~ie~gE-~~~~aa~REl~EE~Gl~~~~~   82 (95)
                      .++++||++|  .+|.|+||||++++|| |+++||.||++||||+.+...
T Consensus        54 ~~~~vLl~~r--~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~  101 (212)
T 1u20_A           54 IRRVLLMMMR--FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV  101 (212)
T ss_dssp             CCEEEEEEEE--TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             cCCEEEEEEe--CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcccc
Confidence            3567888887  5789999999999999 999999999999999987744

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.53  E-value=1.8e-14  Score=102.42  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             eeEEEEEEEE-cCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         24 MALFITTACV-MSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        24 ~~~~~~~~~~-~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ...++++++. .++++||+||...   +|.|+||||+++.| |+++|+.||++||||+.+...+.++.+.+
T Consensus       239 ~~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h  308 (369)
T 3fsp_A          239 QVPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEH  308 (369)
T ss_dssp             EEEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEE
T ss_pred             eEEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEE
Confidence            3344444555 4789999999653   48999999999999 99999999999999999887766665544

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.49  E-value=9.3e-14  Score=93.65  Aligned_cols=66  Identities=14%  Similarity=0.045  Sum_probs=50.6

Q ss_pred             eeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCC------CC---HHHHHHHHHHHHhCCcee-----ece
Q psy11365         24 MALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPE------EE---PAATALREVAEEAGVLGK-----LGR   83 (95)
Q Consensus        24 ~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~g------E~---~~~aa~REl~EE~Gl~~~-----~~~   83 (95)
                      .+.++.+++++ ++++||+||..    .+|.|.+| ||++++|      |+   +.+||+||++||||+.+.     ...
T Consensus        58 ~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~  137 (235)
T 2dho_A           58 LHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEIN  137 (235)
T ss_dssp             CEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSE
T ss_pred             eEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcE
Confidence            45555555554 68999999864    46899999 5999999      88   599999999999999864     245


Q ss_pred             eEEEEe
Q psy11365         84 SLGVFE   89 (95)
Q Consensus        84 ~~~~~~   89 (95)
                      +++.+.
T Consensus       138 ~l~~~~  143 (235)
T 2dho_A          138 YLTRIH  143 (235)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            565544

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.47  E-value=8.5e-14  Score=94.48  Aligned_cols=67  Identities=13%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             ceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEece-eecCCC------CCH---HHHHHHHHHHHhCCcee-----ec
Q psy11365         23 TMALFITTACVM-STLILLVTSSR----RPEHWIVPG-GGVEPE------EEP---AATALREVAEEAGVLGK-----LG   82 (95)
Q Consensus        23 ~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~Pg-G~ie~g------E~~---~~aa~REl~EE~Gl~~~-----~~   82 (95)
                      ..+.++.+++++ ++++||+||..    .+|.|.+|+ |++++|      |++   .+||+||++||||+.+.     ..
T Consensus        68 ~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l  147 (246)
T 2pny_A           68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDI  147 (246)
T ss_dssp             CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGS
T ss_pred             cEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCcccc
Confidence            345555555554 68999999864    468999995 999999      887   99999999999999854     24


Q ss_pred             eeEEEEe
Q psy11365         83 RSLGVFE   89 (95)
Q Consensus        83 ~~~~~~~   89 (95)
                      .+++.+.
T Consensus       148 ~~l~~~~  154 (246)
T 2pny_A          148 VFMTIYH  154 (246)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555543

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.46  E-value=7.4e-13  Score=87.64  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=52.6

Q ss_pred             EEEEEEEE-cCC--EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhC------CceeeceeEEEEecCCCCC
Q psy11365         26 LFITTACV-MST--LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG------VLGKLGRSLGVFEVRPKVP   95 (95)
Q Consensus        26 ~~~~~~~~-~~~--~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~G------l~~~~~~~~~~~~~~~~~p   95 (95)
                      .+.++++. +.+  +|||+|+.  .+.|.||||++++||+..+|++|||.||+|      ...++.++++.+.-++.|+
T Consensus        60 sV~avil~~~~~~phVLLlq~~--~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~wwRp~fet  136 (208)
T 3bho_A           60 TVEGVLIVHEHRLPHVLLLQLG--TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP  136 (208)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEE--TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEEECSSSS
T ss_pred             EEEEEEEEcCCCCcEEEEEEcC--CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEecCCCCC
Confidence            33344433 344  79999974  459999999999999999999999999999      5667788999887776653

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.45  E-value=2.8e-13  Score=93.81  Aligned_cols=41  Identities=34%  Similarity=0.494  Sum_probs=38.0

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCc
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVL   78 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~   78 (95)
                      ++||++|.. .|.|.||||++++|||+.+||+||++||||+.
T Consensus       140 ~vLl~~r~~-~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~  180 (292)
T 1q33_A          140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNS  180 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred             EEEEEEecC-CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence            699998854 58999999999999999999999999999987

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.43  E-value=1.4e-13  Score=91.90  Aligned_cols=42  Identities=26%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCC-CHHHHHHHHHHHHhCCcee
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEE-EPAATALREVAEEAGVLGK   80 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE-~~~~aa~REl~EE~Gl~~~   80 (95)
                      ++||++|.  ++.|+||||++++|| |+++||+||++||||+.+.
T Consensus        66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~  108 (217)
T 2xsq_A           66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA  108 (217)
T ss_dssp             EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred             cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            56776664  689999999999999 9999999999999999876

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.38  E-value=7.1e-13  Score=89.36  Aligned_cols=45  Identities=40%  Similarity=0.607  Sum_probs=39.9

Q ss_pred             EEEEEEEeCC----CCCEEeceeecCCCCC--------------------HHHHHHHHHHHHhCCceee
Q psy11365         37 LILLVTSSRR----PEHWIVPGGGVEPEEE--------------------PAATALREVAEEAGVLGKL   81 (95)
Q Consensus        37 ~vll~~r~~~----~g~w~~PgG~ie~gE~--------------------~~~aa~REl~EE~Gl~~~~   81 (95)
                      +|||.||...    +|.|.||||+++++|+                    +..||+||++||||+.+..
T Consensus        25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~   93 (232)
T 3qsj_A           25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAV   93 (232)
T ss_dssp             EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSE
T ss_pred             EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceecc
Confidence            8999999763    5899999999999987                    5899999999999997653

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.35  E-value=3.9e-12  Score=88.60  Aligned_cols=44  Identities=20%  Similarity=0.233  Sum_probs=40.1

Q ss_pred             EEEEEEEeC----CCCCEE-eceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         37 LILLVTSSR----RPEHWI-VPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        37 ~vll~~r~~----~~g~w~-~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      ++||.||+.    +||.|. +++|++++|||+.+||.||+.||+|+...
T Consensus       134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~  182 (300)
T 3dup_A          134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEA  182 (300)
T ss_dssp             EEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHH
T ss_pred             EEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChh
Confidence            899999965    579995 99999999999999999999999999764

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.32  E-value=9.9e-13  Score=86.61  Aligned_cols=52  Identities=15%  Similarity=0.001  Sum_probs=39.8

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCC-CHHHHHHHHHHHHhCC-ceeeceeEEEEec
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEE-EPAATALREVAEEAGV-LGKLGRSLGVFEV   90 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE-~~~~aa~REl~EE~Gl-~~~~~~~~~~~~~   90 (95)
                      .+|++.|  .+|.|.||||+||+|| |+++|+.||+.||+|+ .+...+++....+
T Consensus        45 ~iLmQ~R--~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~   98 (214)
T 3kvh_A           45 SVLMQMR--FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLT   98 (214)
T ss_dssp             EEEEEEE--TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC
T ss_pred             eEEEeee--eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEec
Confidence            3555554  4689999999999999 9999999999999997 4666666665543

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.27  E-value=1e-11  Score=87.10  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=51.8

Q ss_pred             eeEEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHh-CCceeeceeEEEEecCCC
Q psy11365         24 MALFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEA-GVLGKLGRSLGVFEVRPK   93 (95)
Q Consensus        24 ~~~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~-Gl~~~~~~~~~~~~~~~~   93 (95)
                      ..+.+.+++.++++|||+   ...| |.+|||.++.++  .++|+||++||+ |+.++...++++|+.+..
T Consensus       182 p~~~vgaii~~~g~vLL~---~~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~  246 (321)
T 3rh7_A          182 GEIRLGAVLEQQGAVFLA---GNET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKSD  246 (321)
T ss_dssp             SCEEEEEEEESSSCEEEB---CSSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTTT
T ss_pred             CcceEEEEEEECCEEEEe---eCCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCCC
Confidence            346677777788999999   3457 999988665444  459999999997 999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	2e-11
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	1e-09
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-09
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	4e-08
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	3e-07
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	5e-07
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	1e-06
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-06
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-06
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	3e-06
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	5e-06
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	6e-05
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	7e-05
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	1e-04
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	0.001

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 2e-11
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
          LLV+SSR P+ WIVPGGG+EPEEEP+  A+REV EEAGV G LGR +G+FE + +  
Sbjct: 28 LLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKH 84

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 49.4 bits (117), Expect = 1e-09
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGV 77
           +LV   +    W  P G ++ +E     A+REV EE G 
Sbjct: 17 CVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF 56

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 2e-09
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAG 76
           LL+ +S    HW  P G VEP E+   TALR   EEAG
Sbjct: 31 FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAG 69

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 4e-08
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LL    R      W   GG V+  E     A RE+ EE+G+       +G   
Sbjct: 18 VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIV 71

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 43.2 bits (101), Expect = 3e-07
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 38 ILLVTSSRRPEH------WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR 91
          ILLV     P H      W +P G VE  E P   A+RE  EE G+  +  + LG +  R
Sbjct: 26 ILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR 85

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 42.3 bits (99), Expect = 5e-07
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE 89
          +LL+    R   W+ P G  EP E     A+REV EE GV  ++   L    
Sbjct: 16 VLLLR--DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTR 65

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 41.7 bits (97), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
           +V        + +PGG +E  E       REV EE G+  ++G  LG  +   
Sbjct: 31 TMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYF 84

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.0 bits (95), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 23/57 (40%)

Query: 39 LLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPKVP 95
          +L+   +R   +I PGG VE  E P     RE  EE G++ +             V 
Sbjct: 14 VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVE 70

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-06
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 37  LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF 88
           L  +    +    W +PGG V+P E+ +AT  RE  EEA    +   +    
Sbjct: 139 LQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKRE 190

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 40.5 bits (94), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 38 ILLVTSSRRPEH--WIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP 92
           LLV    R        P G +EP E       REV EE G         G++    
Sbjct: 16 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC 72

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 38 ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGV 77
          +LL+     P    W +PGG V   E    + LRE  EE GV
Sbjct: 56 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGV 97

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 37.5 bits (86), Expect = 6e-05
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 38 ILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEA 75
          I   +    P+ W +P GG++  E+P   A+RE+ EE 
Sbjct: 28 IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 37.1 bits (85), Expect = 7e-05
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 28 ITTACVM----STLILLVTSSRRPEH---WIVPGGGVEPEEEPAATALREVAEEAGVLGK 80
          +T  C++    +  +++   +        +  PGG VE +E  A + +RE+ EE G+  +
Sbjct: 9  LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68

Query: 81 LGRSLGVFE 89
            + +G+  
Sbjct: 69 NPQLVGIKN 77

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 36.2 bits (83), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 45 RRPEHWIVPGGGVEPEEEPA-ATALREVAEEAGV 77
          R       PGG V+  +        RE+ EE G 
Sbjct: 50 RFDGRLGFPGGFVDTRDISLEEGLKRELEEELGP 83

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 28 ITTACVMSTL------ILLVTSSRRPE--HWIVPGGGVEPEEEPAATALREVAEEAGVLG 79
          +   C++         +LL+  +  P    W + GG V+ +E     A R +AE  G+  
Sbjct: 11 LGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLEN 70

Query: 80 KLGRSLGVFE 89
               +G F 
Sbjct: 71 VYMEQVGAFG 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.84
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.84
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.83
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.83
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.83
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.82
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.81
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.8
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.79
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.79
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.78
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.78
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.77
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.74
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.74
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.73
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.73
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.72
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.72
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.71
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.71
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.7
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.64
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.64
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.57
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.57
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.43
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.39
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.34
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.98

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.84  E-value=6.8e-21  Score=119.07  Aligned_cols=76  Identities=25%  Similarity=0.303  Sum_probs=63.5

Q ss_pred             cCCceeEEEEEEEE--cCC--EEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCC
Q psy11365         20 RCPTMALFITTACV--MST--LILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK   93 (95)
Q Consensus        20 ~~~~~~~~~~~~~~--~~~--~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~   93 (95)
                      ..|...+.|.++++  +++  +|||++|+..  .|.|.+|||++++|||+++||+||++||||+++.....++++..+.+
T Consensus         5 ~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   84 (147)
T d2fb1a2           5 SNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDR   84 (147)
T ss_dssp             TSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTS
T ss_pred             CCCCcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCcc
Confidence            45556666666654  343  7999998764  38999999999999999999999999999999999999999988887


Q ss_pred             CC
Q psy11365         94 VP   95 (95)
Q Consensus        94 ~p   95 (95)
                      +|
T Consensus        85 ~~   86 (147)
T d2fb1a2          85 DP   86 (147)
T ss_dssp             SS
T ss_pred             cC
Confidence            65

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.84  E-value=6.1e-21  Score=117.88  Aligned_cols=67  Identities=24%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCCC--CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         25 ALFITTACVMSTLILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~~--g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .+.+++++.+++++||++|...+  +.|.||||+++.|||+.+||+||++||||+.+.....++.+...
T Consensus         3 ~v~va~ii~~~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   71 (146)
T d2b0va1           3 NVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWT   71 (146)
T ss_dssp             EEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEEeCCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEe
Confidence            34566677788999999997754  67999999999999999999999999999999888877766544

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-20  Score=115.60  Aligned_cols=66  Identities=29%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             EEEEEEEEcCCEEEEEEEeCC-CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         26 LFITTACVMSTLILLVTSSRR-PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~~-~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .++.+++.+++++||+||++. +|.|.||||++++|||+++||.||++||||+.+....+++...+.
T Consensus         4 paViv~i~~~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   70 (131)
T d1vk6a2           4 PCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWP   70 (131)
T ss_dssp             EEEEEEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred             cEEEEEEEeCCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccC
Confidence            345566778899999988664 478999999999999999999999999999999888887766543

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=118.04  Aligned_cols=67  Identities=24%  Similarity=0.289  Sum_probs=57.1

Q ss_pred             eeEEEEEEEEcCCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         24 MALFITTACVMSTLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        24 ~~~~~~~~~~~~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ..+.+.+++.+++++||++|++.  .|.|.+|||++++|||+.+||+||++||||+++...+.++.+.+
T Consensus         4 ~r~~~~v~i~~~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~   72 (156)
T d1irya_           4 SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVF   72 (156)
T ss_dssp             CEEEEEECEECSSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEE
T ss_pred             cEEEEEEEEEECCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEE
Confidence            34566667778999999999764  37999999999999999999999999999999887777776554

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.83  E-value=2.7e-20  Score=117.84  Aligned_cols=58  Identities=26%  Similarity=0.462  Sum_probs=49.9

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeec
Q psy11365         25 ALFITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLG   82 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~   82 (95)
                      ...|++++++ +++|||+||...+|.|+||||+|+.|||+++||.||++||||+.+...
T Consensus        14 R~~Vg~vI~n~~~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~   72 (165)
T d1jkna_          14 RRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV   72 (165)
T ss_dssp             EEEEEEEEECTTSCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEE
T ss_pred             cccEEEEEEeCCCEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccccc
Confidence            3455556665 679999999888899999999999999999999999999999987643

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.82  E-value=9.3e-20  Score=113.86  Aligned_cols=71  Identities=30%  Similarity=0.395  Sum_probs=57.2

Q ss_pred             CCceeEEEEEEEEc-CCEEEEEEEeCC------CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecC
Q psy11365         21 CPTMALFITTACVM-STLILLVTSSRR------PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVR   91 (95)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~vll~~r~~~------~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~   91 (95)
                      .|....++++++.+ ++++||++|+..      +|.|.||||++++|||+.+||+||++||||+.+...++++.+...
T Consensus         8 ~p~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~   85 (158)
T d1sjya_           8 VPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR   85 (158)
T ss_dssp             CCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEE
Confidence            34444455555554 689999998653      378999999999999999999999999999999988888877543

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.81  E-value=1.2e-20  Score=116.69  Aligned_cols=62  Identities=29%  Similarity=0.359  Sum_probs=52.0

Q ss_pred             EEEEEEEEcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEE
Q psy11365         26 LFITTACVMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVF   88 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~   88 (95)
                      +++++++++++++||++| +..|.|.||||++++|||+.+||+||++||||+++.....+..+
T Consensus         2 v~a~~vi~~d~kvLl~~r-~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   63 (152)
T d1k2ea_           2 IVTSGVLVENGKVLLVKH-KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGI   63 (152)
T ss_dssp             EEEEEECEETTEEEEEEC-TTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCC
T ss_pred             EEEEEEEEECCEEEEEEE-cCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEE
Confidence            345667778999999988 45689999999999999999999999999999998766554433

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=2e-19  Score=109.30  Aligned_cols=63  Identities=30%  Similarity=0.349  Sum_probs=52.5

Q ss_pred             EEEEEEEEc-CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         26 LFITTACVM-STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        26 ~~~~~~~~~-~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +.+++++++ ++++||+++  ..|.|.||||+++.|||+.+||.||++||||+.+.....++...+
T Consensus         3 v~agavv~~~~~~vLl~~~--~~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~   66 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRY   66 (126)
T ss_dssp             EEEEEEEECTTSCEEEEEC--TTSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEc--CCCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeee
Confidence            456666666 568888875  357999999999999999999999999999999988877776554

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=2.5e-19  Score=112.14  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=48.6

Q ss_pred             CCEEEEEEEeCCC---CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCC
Q psy11365         35 STLILLVTSSRRP---EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRP   92 (95)
Q Consensus        35 ~~~vll~~r~~~~---g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   92 (95)
                      ++++||++|....   +.|.||||++++|||+.+||.||++||||+.+...++++.+..+.
T Consensus        20 ~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~   80 (155)
T d2b06a1          20 TQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPL   80 (155)
T ss_dssp             TTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEEC
T ss_pred             CCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeec
Confidence            5689999886532   569999999999999999999999999999999888888766543

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.5e-19  Score=106.98  Aligned_cols=59  Identities=61%  Similarity=1.091  Sum_probs=52.1

Q ss_pred             CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEecCCC
Q psy11365         35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEVRPK   93 (95)
Q Consensus        35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~   93 (95)
                      ++.+||+++++.+|.|.||||++++|||+.+||+||++||||+.+....+++.+.+...
T Consensus        24 ~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   82 (135)
T d2fvva1          24 EEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER   82 (135)
T ss_dssp             CCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTT
T ss_pred             CCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Confidence            45678888877889999999999999999999999999999999998888888776544

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.1e-20  Score=112.99  Aligned_cols=65  Identities=20%  Similarity=0.294  Sum_probs=53.2

Q ss_pred             EEEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         26 LFITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        26 ~~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      +++++++.+++++||+||...   +|.|.||||+++.|||+.+||.||++||||+.+....+++.+.+
T Consensus         6 vav~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~   73 (129)
T d1puna_           6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEY   73 (129)
T ss_dssp             EEEEECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEE
T ss_pred             EEEEEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEee
Confidence            344444445789999998653   58999999999999999999999999999999887777776654

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=1.3e-18  Score=113.67  Aligned_cols=76  Identities=26%  Similarity=0.419  Sum_probs=59.0

Q ss_pred             cCCceeEEEEEEEE--cC--C--EEEEEEEeCCC--CCEEeceeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEEe
Q psy11365         20 RCPTMALFITTACV--MS--T--LILLVTSSRRP--EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVFE   89 (95)
Q Consensus        20 ~~~~~~~~~~~~~~--~~--~--~vll~~r~~~~--g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~~   89 (95)
                      .++...+.+.++++  +.  +  +|||+||+..|  |.|.||||+++.|||+.+||.||++||||+.+..  +..+.++.
T Consensus        32 ~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~~~~  111 (202)
T d2fmla2          32 EYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFS  111 (202)
T ss_dssp             CCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEEC
T ss_pred             CCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeeeeecc
Confidence            45555555554443  32  2  79999997754  8999999999999999999999999999998754  45677777


Q ss_pred             cCCCCC
Q psy11365         90 VRPKVP   95 (95)
Q Consensus        90 ~~~~~p   95 (95)
                      .+.|||
T Consensus       112 ~~~r~~  117 (202)
T d2fmla2         112 RPDRDP  117 (202)
T ss_dssp             CTTSST
T ss_pred             cCCccc
Confidence            777775

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.4e-18  Score=108.83  Aligned_cols=64  Identities=27%  Similarity=0.363  Sum_probs=50.5

Q ss_pred             eEEEEEEEEc-CCEEEEEEEeCC--CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceee--ceeEEEE
Q psy11365         25 ALFITTACVM-STLILLVTSSRR--PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKL--GRSLGVF   88 (95)
Q Consensus        25 ~~~~~~~~~~-~~~vll~~r~~~--~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~--~~~~~~~   88 (95)
                      .+.+.+++.+ ++++||++|+..  +|.|.+|||++++|||+.+||+||++||||+.+..  ...++.+
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~   86 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW   86 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEE
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEE
Confidence            3455555555 579999999764  47999999999999999999999999999998764  3444444

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.74  E-value=1.7e-18  Score=107.85  Aligned_cols=52  Identities=25%  Similarity=0.358  Sum_probs=45.1

Q ss_pred             EEEEEc--CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         29 TTACVM--STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        29 ~~~~~~--~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      .+++++  .+++||+|+...++.|.||||+++.|||+.+||+||++||||+++.
T Consensus         6 Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~   59 (151)
T d2a6ta2           6 GAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS   59 (151)
T ss_dssp             EEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCT
T ss_pred             EEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCce
Confidence            344444  3699999997777899999999999999999999999999999875

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.2e-18  Score=108.58  Aligned_cols=68  Identities=24%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             ceeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         23 TMALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        23 ~~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ..+.++.+++.+ ++++||+||..    .||.|.+| ||++++|||+++||+||++||||+.......++.+.+
T Consensus        28 ~~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~  101 (161)
T d2fkba1          28 LRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYF  101 (161)
T ss_dssp             CCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEE
T ss_pred             CcEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEe
Confidence            334455555555 67999999864    46999986 8999999999999999999999998777766666543

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.73  E-value=1.4e-17  Score=101.27  Aligned_cols=50  Identities=34%  Similarity=0.507  Sum_probs=44.5

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEE
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLG   86 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~   86 (95)
                      ++||++|...+|.|.||||+++.|||+.+||+||++||||+++.....+.
T Consensus        18 ~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~   67 (137)
T d1ktga_          18 EFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHE   67 (137)
T ss_dssp             EEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             EEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeee
Confidence            68999987778999999999999999999999999999999877555444

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.73  E-value=7.3e-18  Score=108.88  Aligned_cols=54  Identities=30%  Similarity=0.438  Sum_probs=47.7

Q ss_pred             CEEEEEEEeC----CCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         36 TLILLVTSSR----RPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        36 ~~vll~~r~~----~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .+|||+||+.    ++|.|.||||++++|||+.+||+||++||||+.....+.++.+.
T Consensus        45 ~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~  102 (187)
T d1nqza_          45 PRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELD  102 (187)
T ss_dssp             CBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECC
T ss_pred             CEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeeccc
Confidence            4799999975    47999999999999999999999999999999988888888654

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.72  E-value=1.5e-17  Score=104.76  Aligned_cols=67  Identities=18%  Similarity=0.054  Sum_probs=51.4

Q ss_pred             eeEEEEEEEEc-CCEEEEEEEeC----CCCCEEec-eeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         24 MALFITTACVM-STLILLVTSSR----RPEHWIVP-GGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        24 ~~~~~~~~~~~-~~~vll~~r~~----~~g~w~~P-gG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+.++.+++.+ ++++||.||..    .||.|.+| ||++++|||+.+||.||++||||+++.....+..+..
T Consensus        27 ~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~   99 (162)
T d2o5fa1          27 RVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASF   99 (162)
T ss_dssp             GSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEE
T ss_pred             eEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEe
Confidence            44455556665 67999988853    57999876 9999999999999999999999999886665554443

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.3e-17  Score=105.13  Aligned_cols=61  Identities=28%  Similarity=0.428  Sum_probs=48.7

Q ss_pred             EEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEE
Q psy11365         27 FITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGV   87 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   87 (95)
                      .+.+++.+++++||+++.+.   ...|+||+|.+++|||+.+||+||++||||+.+....+...
T Consensus        26 aV~vl~~~~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~l~~~   89 (158)
T d1v8ya_          26 AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSY   89 (158)
T ss_dssp             EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeeeecce
Confidence            34455567889999987653   35899999999999999999999999999998764443333

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=2.1e-17  Score=101.91  Aligned_cols=56  Identities=25%  Similarity=0.396  Sum_probs=44.4

Q ss_pred             EcCCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         33 VMSTLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        33 ~~~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      ..++++||..++ ..|.|.||||++++|||+.+||+||++||||+.+....+++.+.
T Consensus        26 ~~~~~~lll~~~-~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~   81 (147)
T d2azwa1          26 KPENNTMVLVQA-PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEAD   81 (147)
T ss_dssp             EGGGTEEEEEEC-TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEE
T ss_pred             ECCCCEEEEEEc-CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEE
Confidence            334444444443 35799999999999999999999999999999988777776654

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.5e-17  Score=103.24  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             EEEEEEEc-CCEEEEEEEeC----CCCCEEe-ceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365         27 FITTACVM-STLILLVTSSR----RPEHWIV-PGGGVEPEEEPAATALREVAEEAGVLGKLGRSL   85 (95)
Q Consensus        27 ~~~~~~~~-~~~vll~~r~~----~~g~w~~-PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~   85 (95)
                      ++.+++++ ++++||+||+.    .||.|.+ |||++++|||+.+||+||++||||+.+...+.+
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~   68 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI   68 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccce
Confidence            44455554 78999999864    3799987 999999999999999999999999987655443

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.8e-17  Score=106.00  Aligned_cols=64  Identities=17%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             EEEEEEEcCCEEEEEEEeCCC---CCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         27 FITTACVMSTLILLVTSSRRP---EHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        27 ~~~~~~~~~~~vll~~r~~~~---g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      ++.++...+++++|+++.+.+   ..|+||+|.+++|||+.+||+||++||||+.+....+++.+..
T Consensus        50 ~v~vi~~~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~  116 (186)
T d1vhza_          50 AVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSM  116 (186)
T ss_dssp             EEEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEC
T ss_pred             EEEEEEccCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeec
Confidence            333344568899999887654   3699999999999999999999999999999988888887654

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=98.87  Aligned_cols=51  Identities=37%  Similarity=0.524  Sum_probs=44.4

Q ss_pred             CCEEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeE
Q psy11365         35 STLILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSL   85 (95)
Q Consensus        35 ~~~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~   85 (95)
                      +.++||+|+....+.|.||||++++|||+.+||.||++||||+.......+
T Consensus        28 ~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~   78 (153)
T d1xsba_          28 AIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTII   78 (153)
T ss_dssp             TEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEEC
T ss_pred             CCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeee
Confidence            459999998776789999999999999999999999999999987644433

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=4.2e-16  Score=101.66  Aligned_cols=58  Identities=28%  Similarity=0.352  Sum_probs=50.1

Q ss_pred             EcCCEEEEEEEeCCC---CCEEeceeecC-CCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         33 VMSTLILLVTSSRRP---EHWIVPGGGVE-PEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        33 ~~~~~vll~~r~~~~---g~w~~PgG~ie-~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .+++++||+++.+.+   ..|+||+|.++ +||++++||+||++||||+.....++++.+..
T Consensus        47 ~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~  108 (202)
T d1mqea_          47 DDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDT  108 (202)
T ss_dssp             CTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECS
T ss_pred             CCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeec
Confidence            456899999986654   37999999999 79999999999999999999988888887644

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.57  E-value=2.8e-15  Score=90.88  Aligned_cols=65  Identities=15%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             eEEEEEEEEcCCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         25 ALFITTACVMSTLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        25 ~~~~~~~~~~~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .++++++..+++++||.||...   +|.|+||+|.++.+++ .+++.||++||+|+++...+.++.+.+
T Consensus         5 ~v~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H   72 (127)
T d1rrqa2           5 PLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEH   72 (127)
T ss_dssp             EEEEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEE
T ss_pred             EEEEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceE
Confidence            3445545556789999998653   4899999999998777 789999999999999887776666553

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.6e-15  Score=96.72  Aligned_cols=56  Identities=25%  Similarity=0.264  Sum_probs=48.5

Q ss_pred             CCEEEEEEEeCCC------C--CEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEec
Q psy11365         35 STLILLVTSSRRP------E--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFEV   90 (95)
Q Consensus        35 ~~~vll~~r~~~~------g--~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~   90 (95)
                      .++++|+++.+.+      +  .|+||+|.+++|||+++||+|||+||||+.+.....++.+..
T Consensus        69 ~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~  132 (209)
T d1g0sa_          69 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLA  132 (209)
T ss_dssp             TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEES
T ss_pred             CCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeecccccc
Confidence            4789999987733      2  578999999999999999999999999999988888887754

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=93.25  Aligned_cols=43  Identities=33%  Similarity=0.469  Sum_probs=39.0

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCCHHHHHHHHHHHHhCCcee
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEEPAATALREVAEEAGVLGK   80 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~   80 (95)
                      ++||++| ...|.|.||||++++||++.+||+||+.||||+.+.
T Consensus       140 qvLlIkR-~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~  182 (292)
T d1q33a_         140 QFVAIKR-KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ  182 (292)
T ss_dssp             EEEEEEC-TTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGG
T ss_pred             EEEEEEe-cCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccc
Confidence            6889987 456899999999999999999999999999999765

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.39  E-value=2.3e-13  Score=88.22  Aligned_cols=44  Identities=23%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             EEEEEEEeCCCCCEEeceeecCCCCC-HHHHHHHHHHHHhCCceeec
Q psy11365         37 LILLVTSSRRPEHWIVPGGGVEPEEE-PAATALREVAEEAGVLGKLG   82 (95)
Q Consensus        37 ~vll~~r~~~~g~w~~PgG~ie~gE~-~~~aa~REl~EE~Gl~~~~~   82 (95)
                      .+|+++|  .+|.|.||||++++||+ +++||.||++||||+.+...
T Consensus        44 ~vl~~~r--~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~   88 (196)
T d1u20a1          44 VLLMMMR--FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV   88 (196)
T ss_dssp             EEEEEEE--TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             EEEEEEe--cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeE
Confidence            5667665  46899999999999996 78899999999999987644

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.2e-12  Score=82.90  Aligned_cols=55  Identities=20%  Similarity=0.151  Sum_probs=44.9

Q ss_pred             cCCEEEEEEEeCCC-------C--CEEeceeecCCCCCHHHHHHHHHHHHhCCceeeceeEEEEe
Q psy11365         34 MSTLILLVTSSRRP-------E--HWIVPGGGVEPEEEPAATALREVAEEAGVLGKLGRSLGVFE   89 (95)
Q Consensus        34 ~~~~vll~~r~~~~-------g--~w~~PgG~ie~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~   89 (95)
                      .+++++|+++.+.+       +  .|++|+|.++ +|++++||+|||.||||+.+.....++.+.
T Consensus        54 ~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~  117 (189)
T d1viua_          54 KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELY  117 (189)
T ss_dssp             TTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEE
T ss_pred             CCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceee
Confidence            36799999887521       2  5678999987 566899999999999999998888888764

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.9e-10  Score=67.33  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             CCEEEEEEEeCC---CCCEEeceeecCCCCCHHHHHHHHHHHHhCC
Q psy11365         35 STLILLVTSSRR---PEHWIVPGGGVEPEEEPAATALREVAEEAGV   77 (95)
Q Consensus        35 ~~~vll~~r~~~---~g~w~~PgG~ie~gE~~~~aa~REl~EE~Gl   77 (95)
                      +++|||.||...   .|+|+||+|.++.+|+..+++.+|..+|.+.
T Consensus        26 ~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~   71 (142)
T d1x51a1          26 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAG   71 (142)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhcc
Confidence            569999999664   4899999999999999998887776555554