Psyllid ID: psy11458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MTPPPVVNGGRRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFVES
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEccccccccccccEEEEEEcHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccEEEEEEcc
Coil and Loop (DISEMBL)
mtpppvvnggrrsysesdytyidivsqndiyagndcrwspgywKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRlqlkdiiptgmlreqtsysSLHVQKILTFIFPWRLGTIEWFVES
Flexible Loop (DISEMBL)
mtpppvvnggrrsysesdYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIAleslrerrrkDSRLNAflteaelnplcrrLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFVES
Low Complexity Region (SEG)
MTPPPVVNGGRRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGaageafqraaaTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFVES
Disordered region (IsUnstruct)
*****************DYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALE***********LNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFV**
Disordered Region (DISOPRED)
**PPP***GGRRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGT**WFV**
Disordered Region (DISEMBL)
**********RRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFVES
Disordered Region (DISPRO)
*****V**GGRRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFVES
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTPPPVVNGGRRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRLGTIEWFVES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9NZN5	1544	Rho guanine nucleotide ex	yes	N/A	0.427	0.044	0.573	1e-16
Q8R4H2	1543	Rho guanine nucleotide ex	yes	N/A	0.415	0.042	0.590	1e-16
Q92888	912	Rho guanine nucleotide ex	no	N/A	0.408	0.071	0.6	4e-16
Q61210	920	Rho guanine nucleotide ex	no	N/A	0.408	0.070	0.584	8e-16
Q9Z1I6	919	Rho guanine nucleotide ex	no	N/A	0.408	0.070	0.584	1e-15
Q9ES67	1527	Rho guanine nucleotide ex	no	N/A	0.408	0.042	0.538	8e-14
O15085	1522	Rho guanine nucleotide ex	no	N/A	0.559	0.058	0.404	2e-13

>sp|Q9NZN5|ARHGC_HUMAN Rho guanine nucleotide exchange factor 12 OS=Homo sapiens GN=ARHGEF12 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 48/68 (70%)

Query: 61  MEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
           + +F G   E  + AAATFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct: 869 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 928

Query: 121 IIPTGMLR 128
           IIPT M R
Sbjct: 929 IIPTQMQR 936

May play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13). Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase and may act as GTPase-activating protein (GAP) for GNA12 and GNA13.
Homo sapiens (taxid: 9606)

>sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12 OS=Mus musculus GN=Arhgef12 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 48/66 (72%)

Query: 63  YFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
           +F G   E  + AAATFCS Q  ALE ++ R++KDSR + F+ +AE NPLCRRLQLKDII
Sbjct: 871 WFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFHTFVQDAESNPLCRRLQLKDII 930

Query: 123 PTGMLR 128
           PT M R
Sbjct: 931 PTQMQR 936

May play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13). Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase and may act as GTPase-activating protein (GAP) for GNA12 and GNA13.

Mus musculus (taxid: 10090)

>sp|Q92888|ARHG1_HUMAN Rho guanine nucleotide exchange factor 1 OS=Homo sapiens GN=ARHGEF1 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 47/65 (72%)

Query: 64  FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDGA G  FQ+ ++ FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 500 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 559

Query: 124 TGMLR 128
           T M R
Sbjct: 560 TEMQR 564

Seems to play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13) subunits. Acts as GTPase-activating protein (GAP) for GNA12 and GNA13, and as guanine nucleotide exchange factor (GEF) for RhoA GTPase. Activated G alpha 13/GNA13 stimulates the RhoGEF activity through interaction with the RGS-like domain. This GEF activity is inhibited by binding to activated GNA12. Mediates angiotensin-2-induced RhoA activation.

Homo sapiens (taxid: 9606)

>sp|Q61210|ARHG1_MOUSE Rho guanine nucleotide exchange factor 1 OS=Mus musculus GN=Arhgef1 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 64  FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDGA G  FQ+ ++ FCSRQ  ALE L+ ++RK+ R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 499 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIP 558

Query: 124 TGMLR 128
           T M R
Sbjct: 559 TEMQR 563

Seems to play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13) subunits. Acts as GTPase-activating protein (GAP) for GNA12 and GNA13, and as guanine nucleotide exchange factor (GEF) for RhoA GTPase. Activated G alpha 13/GNA13 stimulates the RhoGEF activity through interaction with the RGS-like domain. This GEF activity is inhibited by binding to activated GNA12. Mediates angiotensin-2-induced RhoA activation. Isoform 3 and isoform 4 do not homooligomerize and show an enhanced RhoGEF activity.

Mus musculus (taxid: 10090)

>sp|Q9Z1I6|ARHG1_RAT Rho guanine nucleotide exchange factor 1 OS=Rattus norvegicus GN=Arhgef1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 64  FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDGA G  FQ+ ++ FCSRQ  ALE L+ ++RK+ R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 498 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIP 557

Query: 124 TGMLR 128
           T M R
Sbjct: 558 TEMQR 562

Seems to play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13) subunits. Acts as GTPase-activating protein (GAP) for GNA12 and GNA13, and as guanine nucleotide exchange factor (GEF) for RhoA GTPase. Activated G alpha 13/GNA13 stimulates the RhoGEF activity through interaction with the RGS-like domain. This GEF activity is inhibited by binding to activated GNA12 (By similarity). Mediates angiotensin-2-induced RhoA activation.

Rattus norvegicus (taxid: 10116)

>sp|Q9ES67|ARHGB_RAT Rho guanine nucleotide exchange factor 11 OS=Rattus norvegicus GN=Arhgef11 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 46/65 (70%)

Query: 64  FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDG A E  Q+ AA FCS Q +ALE +R ++RK+SR   F+ EAE +P CRRLQL+D+I 
Sbjct: 825 FDGPAREELQQVAAQFCSYQSVALELIRTKQRKESRFQLFMQEAESHPQCRRLQLRDLIV 884

Query: 124 TGMLR 128
           + M R
Sbjct: 885 SEMQR 889

May play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13). Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase and may act as GTPase-activating protein (GAP) for GNA12 and GNA13.

Rattus norvegicus (taxid: 10116)

>sp|O15085|ARHGB_HUMAN Rho guanine nucleotide exchange factor 11 OS=Homo sapiens GN=ARHGEF11 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 10/99 (10%)

Query: 40  PGYWKICNEYCEYQNQEYQ----------MNMEYFDGAAGEAFQRAAATFCSRQQIALES 89
           P   +I N +CE   +  +          + +  FDG A E  Q+ AA FCS Q IALE 
Sbjct: 783 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 842

Query: 90  LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
           ++ ++RK+SR   F+ EAE +P CRRLQL+D+I + M R
Sbjct: 843 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 881

May play a role in the regulation of RhoA GTPase by guanine nucleotide-binding alpha-12 (GNA12) and alpha-13 (GNA13). Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase and may act as GTPase-activating protein (GAP) for GNA12 and GNA13.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
328698761	1496	PREDICTED: rho guanine nucleotide exchan	0.427	0.045	0.720	1e-23
307180856	1554	Rho guanine nucleotide exchange factor 1	0.446	0.045	0.704	5e-23
307198897	600	Rho guanine nucleotide exchange factor 1	0.446	0.118	0.676	4e-22
322798294	659	hypothetical protein SINV_10145 [Solenop	0.446	0.107	0.676	9e-22
332028853	684	Rho guanine nucleotide exchange factor 1	0.446	0.103	0.661	2e-21
350398669	1675	PREDICTED: hypothetical protein LOC10074	0.427	0.040	0.691	2e-21
340709994	1675	PREDICTED: rho guanine nucleotide exchan	0.427	0.040	0.691	2e-21
383852854	1678	PREDICTED: uncharacterized protein LOC10	0.446	0.042	0.647	5e-21
321468064	353	hypothetical protein DAPPUDRAFT_52830 [D	0.408	0.184	0.753	6e-21
242008333	391	LBC oncogene, putative [Pediculus humanu	0.427	0.173	0.691	1e-20

>gi|328698761|ref|XP_001945506.2| PREDICTED: rho guanine nucleotide exchange factor 11-like [Acyrthosiphon pisum]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/68 (72%), Positives = 62/68 (91%)

Query: 61  MEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
           +  FDG+AGE FQ+AAATFC+RQQIALESL+E+R+KD++LN FL EAE NP+C+RLQLKD
Sbjct: 930 LNTFDGSAGEVFQKAAATFCARQQIALESLKEKRKKDTKLNIFLNEAEGNPVCKRLQLKD 989

Query: 121 IIPTGMLR 128
           I+PTGM+R
Sbjct: 990 ILPTGMIR 997

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180856|gb|EFN68692.1| Rho guanine nucleotide exchange factor 12 [Camponotus floridanus]

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/71 (70%), Positives = 63/71 (88%)

Query: 58  QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
           ++ +E FDG AGEAF+RAA+T+C++QQ+AL++LR+RRRKDS+LNAFL E E NPLCRRLQ
Sbjct: 910 ELLLEMFDGEAGEAFERAASTYCAKQQVALDALRDRRRKDSKLNAFLNEVEANPLCRRLQ 969

Query: 118 LKDIIPTGMLR 128
           LKD I TGMLR
Sbjct: 970 LKDHILTGMLR 980

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198897|gb|EFN79654.1| Rho guanine nucleotide exchange factor 12 [Harpegnathos saltator]

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 58  QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
           ++ +E FDG  GEAF+RAA+T+C++QQ+AL++LR+RRRKDS+LN+FL E E NPLCRRLQ
Sbjct: 27  ELLLEMFDGEGGEAFERAASTYCAKQQVALDALRDRRRKDSKLNSFLNEIEANPLCRRLQ 86

Query: 118 LKDIIPTGMLR 128
           LKD I TGMLR
Sbjct: 87  LKDHILTGMLR 97

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798294|gb|EFZ20040.1| hypothetical protein SINV_10145 [Solenopsis invicta]

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 58  QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
           ++ +E FDG AGE F++AA+T+C++QQ+AL++LR+RRRKDS+LNAFL E E NPLCRRLQ
Sbjct: 250 ELLLEMFDGEAGEVFEKAASTYCAKQQVALDALRDRRRKDSKLNAFLNEVEANPLCRRLQ 309

Query: 118 LKDIIPTGMLR 128
           LKD I TGMLR
Sbjct: 310 LKDHILTGMLR 320

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028853|gb|EGI68879.1| Rho guanine nucleotide exchange factor 12 [Acromyrmex echinatior]

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 62/71 (87%)

Query: 58  QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
           ++ +E FDG AGE F++AA+T+C++QQ+AL++LR+RRRKDS+LNAFL + E NPLCRRLQ
Sbjct: 27  ELLLEMFDGEAGEIFEKAASTYCAKQQVALDALRDRRRKDSKLNAFLNDVEANPLCRRLQ 86

Query: 118 LKDIIPTGMLR 128
           LKD I TGMLR
Sbjct: 87  LKDHILTGMLR 97

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398669|ref|XP_003485267.1| PREDICTED: hypothetical protein LOC100745717 [Bombus impatiens]

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query: 61   MEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
            +E FDG  GEAF+RAA+T+C++QQ+AL++LR+RRRKD +LN+FL E E NPLCRRLQLKD
Sbjct: 1049 LEMFDGENGEAFERAASTYCAKQQVALDALRDRRRKDPKLNSFLNEIEANPLCRRLQLKD 1108

Query: 121  IIPTGMLR 128
             I TGMLR
Sbjct: 1109 HILTGMLR 1116

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709994|ref|XP_003393584.1| PREDICTED: rho guanine nucleotide exchange factor 12-like [Bombus terrestris]

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query: 61   MEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
            +E FDG  GEAF+RAA+T+C++QQ+AL++LR+RRRKD +LN+FL E E NPLCRRLQLKD
Sbjct: 1049 LEMFDGENGEAFERAASTYCAKQQVALDALRDRRRKDPKLNSFLNEIEANPLCRRLQLKD 1108

Query: 121  IIPTGMLR 128
             I TGMLR
Sbjct: 1109 HILTGMLR 1116

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852854|ref|XP_003701940.1| PREDICTED: uncharacterized protein LOC100879778 [Megachile rotundata]

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 61/71 (85%)

Query: 58   QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
            ++ +E FDG  GE+F+RAA+T+C++QQ+AL++LR+RRRKD +LN+FL E E NPLCRRLQ
Sbjct: 1047 ELLLEMFDGENGESFERAASTYCAKQQVALDALRDRRRKDPKLNSFLNEIEANPLCRRLQ 1106

Query: 118  LKDIIPTGMLR 128
            LKD I TGMLR
Sbjct: 1107 LKDHILTGMLR 1117

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468064|gb|EFX79051.1| hypothetical protein DAPPUDRAFT_52830 [Daphnia pulex]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 55/65 (84%)

Query: 64  FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDG  GEAFQ+AAATFC  Q +ALESLR+RR+KDS+L AFL EAE NP+CRRLQLKDIIP
Sbjct: 101 FDGPNGEAFQQAAATFCKYQSVALESLRDRRKKDSKLQAFLAEAEGNPVCRRLQLKDIIP 160

Query: 124 TGMLR 128
           T M R
Sbjct: 161 TAMQR 165

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008333|ref|XP_002424961.1| LBC oncogene, putative [Pediculus humanus corporis] gi|212508575|gb|EEB12223.1| LBC oncogene, putative [Pediculus humanus corporis]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query: 61  MEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
           +  FDG AG+ FQRAA+ FC+ QQIALE L+ERRRKD++L+ FLTEAE NPLCRRLQLKD
Sbjct: 138 LAMFDGPAGDNFQRAASVFCANQQIALEQLKERRRKDTKLSNFLTEAEGNPLCRRLQLKD 197

Query: 121 IIPTGMLR 128
           ++PT M R
Sbjct: 198 MLPTVMQR 205

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|F1P1Y1	1508	ARHGEF12 "Uncharacterized prot	0.471	0.049	0.5	8.8e-13
UNIPROTKB|E9PMR6	1441	ARHGEF12 "Rho guanine nucleoti	0.471	0.052	0.5	1.7e-12
UNIPROTKB|F1S9S2	1534	ARHGEF12 "Uncharacterized prot	0.471	0.048	0.5	1.9e-12
UNIPROTKB|F1PET2	1543	ARHGEF12 "Uncharacterized prot	0.471	0.048	0.5	1.9e-12
MGI|MGI:1916882	1543	Arhgef12 "Rho guanine nucleoti	0.459	0.047	0.513	1.9e-12
UNIPROTKB|Q9NZN5	1544	ARHGEF12 "Rho guanine nucleoti	0.471	0.048	0.5	1.9e-12
UNIPROTKB|E9PTU1	1416	Arhgef12 "Protein Arhgef12" [R	0.459	0.051	0.513	2.2e-12
UNIPROTKB|F1MZA2	1544	ARHGEF12 "Uncharacterized prot	0.459	0.047	0.513	2.4e-12
RGD|1305111	1546	Arhgef12 "Rho guanine nucleoti	0.459	0.047	0.513	2.4e-12
UNIPROTKB|Q92888	912	ARHGEF1 "Rho guanine nucleotid	0.477	0.083	0.512	8.9e-12

UNIPROTKB|F1P1Y1 ARHGEF12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query:    61 MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
             + +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct:   855 LSWFSGAAEEKLKHATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 914

Query:   121 IIPTGMLREQTSYSSL 136
             IIPT M R  T Y  L
Sbjct:   915 IIPTEMQR-LTKYPLL 929

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|E9PMR6 ARHGEF12 "Rho guanine nucleotide exchange factor 12" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query:    61 MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
             + +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct:   766 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 825

Query:   121 IIPTGMLREQTSYSSL 136
             IIPT M R  T Y  L
Sbjct:   826 IIPTQMQR-LTKYPLL 840

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|F1S9S2 ARHGEF12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query:    61 MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
             + +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct:   859 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 918

Query:   121 IIPTGMLREQTSYSSL 136
             IIPT M R  T Y  L
Sbjct:   919 IIPTQMQR-LTKYPLL 933

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1PET2 ARHGEF12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query:    61 MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
             + +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct:   869 LTWFSGPGEDKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 928

Query:   121 IIPTGMLREQTSYSSL 136
             IIPT M R  T Y  L
Sbjct:   929 IIPTQMQR-LTKYPLL 943

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

MGI|MGI:1916882 Arhgef12 "Rho guanine nucleotide exchange factor (GEF) 12" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/74 (51%), Positives = 46/74 (62%)

Query:    63 YFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
             +F G           TFCS Q  ALE ++ R++KDSR + F+ +AE NPLCRRLQLKDII
Sbjct:   871 WFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFHTFVQDAESNPLCRRLQLKDII 930

Query:   123 PTGMLREQTSYSSL 136
             PT M R  T Y  L
Sbjct:   931 PTQMQR-LTKYPLL 943

GO:0001664 "G-protein coupled receptor binding" evidence=ISO

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|Q9NZN5 ARHGEF12 "Rho guanine nucleotide exchange factor 12" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query:    61 MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
             + +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct:   869 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 928

Query:   121 IIPTGMLREQTSYSSL 136
             IIPT M R  T Y  L
Sbjct:   929 IIPTQMQR-LTKYPLL 943

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0001664 "G-protein coupled receptor binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

UNIPROTKB|E9PTU1 Arhgef12 "Protein Arhgef12" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 38/74 (51%), Positives = 45/74 (60%)

Query:    63 YFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
             +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKDII
Sbjct:   872 WFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDII 931

Query:   123 PTGMLREQTSYSSL 136
             PT M R  T Y  L
Sbjct:   932 PTQMQR-LTKYPLL 944

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|F1MZA2 ARHGEF12 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 38/74 (51%), Positives = 45/74 (60%)

Query:    63 YFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
             +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKDII
Sbjct:   871 WFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDII 930

Query:   123 PTGMLREQTSYSSL 136
             PT M R  T Y  L
Sbjct:   931 PTQMQR-LTKYPLL 943

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

RGD|1305111 Arhgef12 "Rho guanine nucleotide exchange factor (GEF) 12" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 38/74 (51%), Positives = 45/74 (60%)

Query:    63 YFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
             +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKDII
Sbjct:   871 WFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDII 930

Query:   123 PTGMLREQTSYSSL 136
             PT M R  T Y  L
Sbjct:   931 PTQMQR-LTKYPLL 943

GO:0001664 "G-protein coupled receptor binding" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q92888 ARHGEF1 "Rho guanine nucleotide exchange factor 1" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 8.9e-12, P = 8.9e-12
 Identities = 40/78 (51%), Positives = 46/78 (58%)

Query:    64 FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
             FDG            FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+IP
Sbjct:   500 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 559

Query:   124 TGMLREQTSYSSLHVQKI 141
             T M R  T Y  L +Q I
Sbjct:   560 TEMQR-LTKYPLL-LQSI 575

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050770 "regulation of axonogenesis" evidence=TAS

GO:0050771 "negative regulation of axonogenesis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NZN5	ARHGC_HUMAN	No assigned EC number	0.5735	0.4276	0.0440	yes	N/A
Q8R4H2	ARHGC_MOUSE	No assigned EC number	0.5909	0.4150	0.0427	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
pfam00621	179	pfam00621, RhoGEF, RhoGEF domain	9e-09
smart00325	180	smart00325, RhoGEF, Guanine nucleotide exchange fa	7e-06
cd00160	181	cd00160, RhoGEF, Guanine nucleotide exchange facto	8e-04

>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 70  EAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
             F +  +T+CS    ALE L++ R+K+ R   FL E E +PLCR L L   +   + R
Sbjct: 80  APFFKVYSTYCSNYPRALELLKKLRKKNPRFAKFLKECEASPLCRGLDLNSFLIKPVQR 138

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179

>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 72  FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
           F +  + +CS    ALE L ++ +K+ R   FL E E +P CRRL L+ ++   + R
Sbjct: 84  FFKIYSEYCSNHPDALE-LLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQR 139

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage. Length = 180

>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 70  EAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
             F +  + +CS    ALE L++ ++ +     FL +AE    C RL+L+ ++   + R
Sbjct: 85  APFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAESE--CGRLKLESLLLKPVQR 141

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG3520|consensus	1167		99.96
KOG3521|consensus	846		99.82
KOG3523|consensus	695		99.81
smart00325	180	RhoGEF Guanine nucleotide exchange factor for Rho/	99.78
cd00160	181	RhoGEF Guanine nucleotide exchange factor for Rho/	99.76
KOG4305|consensus	1029		99.74
PF00621	180	RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho	99.7
KOG2996|consensus	865		99.61
KOG4424|consensus	623		99.52
KOG3519|consensus	756		98.87
KOG3518|consensus	521		98.78
COG5422	1175	ROM1 RhoGEF, Guanine nucleotide exchange factor fo	98.58
KOG3522|consensus	925		98.55
KOG0689|consensus	448		98.41
KOG4240|consensus	1025		98.27
KOG3524|consensus	850		98.12
KOG2070|consensus	661		97.7
KOG3531|consensus	1036		97.04
KOG3524|consensus	850		81.57

>KOG3520|consensus

Probab=99.96  E-value=1.6e-29  Score=244.22  Aligned_cols=114  Identities=32%  Similarity=0.472  Sum_probs=106.4

Q ss_pred             chhhhcccccCChhhHHHHHHHHHH-----------HhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458         28 NDIYAGNDCRWSPGYWKICNEYCEY-----------QNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK   96 (159)
Q Consensus        28 ~di~~~n~~~~~~~Li~ih~~~~~~-----------v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk   96 (159)
                      +-||.|.     ++|++||..|++.           |+.|||+|+.+|+|++||.|+++|++||++|+.|+++||.+.+|
T Consensus       432 ~~LFP~L-----deL~eiH~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~K  506 (1167)
T KOG3520|consen  432 NKLFPCL-----DELIEIHSSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAK  506 (1167)
T ss_pred             HHhcccH-----HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            4567765     6899999999865           46799999999999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCC
Q psy11458         97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFP  147 (159)
Q Consensus        97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~  147 (159)
                      |++|++|+++|+++|.||||+|+|||+..|||| |||||||++|+|+|+.+
T Consensus       507 D~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QRL-TKYPLLle~I~k~T~~~  556 (1167)
T KOG3520|consen  507 DKRFQAFVKKAESNPVCRRLGLKDCILLVTQRL-TKYPLLLERILKYTEDN  556 (1167)
T ss_pred             cHHHHHHHHHhhcchHHHhhcchHHHHHHHHHH-hhchHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999 99999999999998743

>KOG3521|consensus

Probab=99.82  E-value=6.4e-21  Score=177.38  Aligned_cols=86  Identities=22%  Similarity=0.290  Sum_probs=80.4

Q ss_pred             HHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCCcch
Q psy11458         71 AFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRL  150 (159)
Q Consensus        71 ~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~~~~  150 (159)
                      ..+.+|..||..++.++++.+++.++|+-|++||+|||+++.|.|+.|-|++++||||| |||||||++|+|.++.++--
T Consensus       271 s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRL-TKY~LLLkAVlK~t~d~~e~  349 (846)
T KOG3521|consen  271 SWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRL-TKYPLLLKAVLKVTTDERER  349 (846)
T ss_pred             HhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHh-hhhHHHHHHHHhhCCCHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999 99999999999999999877


Q ss_pred             hhhhhhh
Q psy11458        151 GTIEWFV  157 (159)
Q Consensus       151 ~~~~~~~  157 (159)
                      -||+..+
T Consensus       350 Eai~aMi  356 (846)
T KOG3521|consen  350 EAISAMI  356 (846)
T ss_pred             HHHHHHH
Confidence            7665443

>KOG3523|consensus

Probab=99.81  E-value=2.1e-20  Score=172.45  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             hhHHHHHHHHH--HHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCC
Q psy11458         41 GYWKICNEYCE--YQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQL  118 (159)
Q Consensus        41 ~Li~ih~~~~~--~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L  118 (159)
                      .|.++..++.+  .+.+|+||+.+++.     .++.+|..||+||.+..++|+.++.+|+.|.+.+.++|.+|.|+||+|
T Consensus       315 fl~dLE~r~e~ni~i~dicDiv~~ha~-----~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl  389 (695)
T KOG3523|consen  315 FLCDLEARLEENIFIDDICDIVEDHAA-----KHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPL  389 (695)
T ss_pred             HHHHHHHHHHhCchhhHHHHHHHHhcc-----cccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCc
Confidence            35555555543  35789999999985     457999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        119 KDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       119 ~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      .+||++||||| ||+|||+++|+++++.
T Consensus       390 ~SFLiLPmQRI-TRL~LLl~nIl~rt~~  416 (695)
T KOG3523|consen  390 RSFLILPMQRI-TRLPLLLDNILKRTEE  416 (695)
T ss_pred             hhhhhchHHHH-HHHHHHHHHHHhhcCC
Confidence            99999999999 9999999999999864

>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Probab=99.78  E-value=4.9e-19  Score=136.06  Aligned_cols=98  Identities=23%  Similarity=0.391  Sum_probs=88.9

Q ss_pred             hhhHHHHHHHHHHH-----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQ-----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v-----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      +.++++|..+...+           ..||++|+++-      .+.++|..||.++..|.+.+.+ +++|+.|..|+++|+
T Consensus        47 ~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~------~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~  119 (180)
T smart00325       47 EEIYEFHRDFLDELEERIEEWDDSPERIGDVFLKLE------EFFKIYSEYCSNHPDALELLKK-LKKNPRFQKFLKEIE  119 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh------HHHHHHHHHHHhHHHHHHHHHH-hhcChhHHHHHHHHh
Confidence            67888888887654           35899999872      5679999999999999999999 689999999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      ..+.|++++|.++|++|+||+ +||||||++|++++.
T Consensus       120 ~~~~~~~~~l~~~L~~PvqRl-~rY~lll~~l~k~t~  155 (180)
T smart00325      120 SSPQCRRLTLESLLLKPVQRL-TKYPLLLKELLKHTP  155 (180)
T ss_pred             CChhhccCCHHHHHhHHHHHh-ccHHHHHHHHHHhCC
Confidence            999999999999999999999 999999999999986

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.

>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

Probab=99.76  E-value=2.5e-18  Score=132.25  Aligned_cols=98  Identities=19%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      +.++++|..+...++           .||++|+++.+      +..+|..||.++..|.+.+++.++.++.|.+|+++++
T Consensus        50 ~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~~------~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~  123 (181)
T cd00160          50 EEIYEFHRIFLKSLEERVEEWDKSGPRIGDVFLKLAP------FFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAE  123 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHhhh------HHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            679999999976542           48999999873      6799999999999999999999889999999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      .  .+++++|.++|++|+||+ +||||||++|++++.-
T Consensus       124 ~--~~~~~~l~~~L~~PvQRl-~rY~lLL~~l~k~t~~  158 (181)
T cd00160         124 S--ECGRLKLESLLLKPVQRL-TKYPLLLKELLKHTPD  158 (181)
T ss_pred             H--hcccCCHHHHhhhhHHHh-chHHHHHHHHHHhCCC
Confidence            9  889999999999999999 9999999999999864

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

>KOG4305|consensus

Probab=99.74  E-value=5.8e-19  Score=170.49  Aligned_cols=109  Identities=15%  Similarity=0.189  Sum_probs=91.6

Q ss_pred             cccchhhhcccccCChhhHHH--HHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHH
Q psy11458         25 VSQNDIYAGNDCRWSPGYWKI--CNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNA  102 (159)
Q Consensus        25 ~~~~di~~~n~~~~~~~Li~i--h~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~  102 (159)
                      .+|.+|+++|..    .|-.+  -++....+++|||||++|..     +| +.|..||++|..|...++..++.|++|++
T Consensus       385 ~n~~~ii~ln~~----LL~aL~~r~k~~G~V~~IGdIll~~lp-----~~-~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~  454 (1029)
T KOG4305|consen  385 GNIEEIIQLNEK----LLKALRVRQKLSGVVEGIGDILLAWLP-----KA-EPYISYGANQAYAKALIEQKKKQNPRFAR  454 (1029)
T ss_pred             hhHHHHHHHHHH----HHHHHHHhhccCCccchHHHHHHHHhh-----hh-hHHHHHHhhhHHHHHHHHHHhccCchHHH
Confidence            366777777732    12112  22223367899999999984     44 55999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458        103 FLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF  144 (159)
Q Consensus       103 fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~  144 (159)
                      |+++|++.|+||||.|..||..||||+ +||||||+.|||+|
T Consensus       455 fl~~~~~sp~~rkl~L~~FL~kp~sRl-~RYpLllr~ILk~T  495 (1029)
T KOG4305|consen  455 FLKECESSPESRKLDLVSFLTKPTSRL-QRYPLLLREILKHT  495 (1029)
T ss_pred             HHHHHHhChhhhccchhhhhccccchh-heeeHHHHHHHhcC
Confidence            999999999999999999999999999 99999999999887

>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes

Probab=99.70  E-value=2.3e-17  Score=125.01  Aligned_cols=100  Identities=24%  Similarity=0.332  Sum_probs=91.4

Q ss_pred             hhhHHHHHHHHHHHhH----------HHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQNQ----------EYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~~----------IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      ++++++|..++..+..          ||++|++ +.     .+..+|..||.++..+...+++..+++..|..|+++++.
T Consensus        47 ~~l~~~h~~ll~~L~~~~~~~~~~~~i~~if~~-~~-----~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  120 (180)
T PF00621_consen   47 EELIEIHQQLLESLEERMKEWSNIQSIGDIFLK-FE-----PFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIEN  120 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHH-HT-----TGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhccchhhhhhhh-cc-----ccccceeccchheechhhhhhHHHhhccccccccccccc
Confidence            7899999999877654          9999998 53     467899999999999999999998889999999999999


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      +|.++++++.++|..|+||| +||||||++|++++.-
T Consensus       121 ~~~~~~~~l~~~l~~Piqrl-~rY~lll~~llk~t~~  156 (180)
T PF00621_consen  121 SPESKRLSLSSLLIKPIQRL-PRYPLLLKRLLKNTPP  156 (180)
T ss_dssp             SHHCTTSTHHHHTTHHHHHH-HHHHHHHHHHHHTSST
T ss_pred             cccccCCCHHHHHHHhhhHH-HHHHHHHHHHHHcCCC
Confidence            99999999999999999999 9999999999998873

Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....

>KOG2996|consensus

Probab=99.61  E-value=1.7e-15  Score=140.38  Aligned_cols=110  Identities=18%  Similarity=0.146  Sum_probs=98.4

Q ss_pred             hhhhcccccCChhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHh
Q psy11458         29 DIYAGNDCRWSPGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSR   99 (159)
Q Consensus        29 di~~~n~~~~~~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~   99 (159)
                      +|.+.|.    ++|+++|..+...++         .+++||+.+-     |+| -+|+.|||+-..|.+++.++.+.++.
T Consensus       237 ~ivFiNi----eel~klHt~ll~ei~~sv~v~~~qtl~qVFikyk-----er~-liYG~YCS~~e~a~k~ln~llktrEd  306 (865)
T KOG2996|consen  237 NIVFINI----EELNKLHTALLAEIEYSVKVAGGQTLYQVFIKYK-----ERL-LIYGKYCSNVESARKLLNELLKTRED  306 (865)
T ss_pred             heeEecH----HHHHHHHHHHHHHhHHHhhCCCcccHHHHHHHHH-----HHH-hhhhhhhccchHHHHHHHHHHHHhHH
Confidence            4566674    899999999977653         4788999865     465 69999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCCcc
Q psy11458        100 LNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWR  149 (159)
Q Consensus       100 F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~~~  149 (159)
                      |+.-+.+|.....-.+..|+|+|+.||||+ +||||||++++|+++.+--
T Consensus       307 v~~kleEct~r~nngkF~l~DLL~VPmQRv-lKYhLLLkEL~kht~~a~e  355 (865)
T KOG2996|consen  307 VSRKLEECTARANNGKFTLRDLLVVPMQRV-LKYHLLLKELVKHTDEASE  355 (865)
T ss_pred             HHHHHHHHHhhhcCCceeeceeeeeeHHHH-HHHHHHHHHHHHhcccCCh
Confidence            999999999999988999999999999999 9999999999999988753

>KOG4424|consensus

Probab=99.52  E-value=4.8e-14  Score=130.09  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=79.2

Q ss_pred             HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhH
Q psy11458         55 QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYS  134 (159)
Q Consensus        55 ~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYP  134 (159)
                      .|||||....      .|.++|+.|..|+..|+++++.+.++++.|+.+|++.|++|.|.+|.|+..++.|+||| .||-
T Consensus       133 ~Iadv~qKlA------PFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRI-PRYe  205 (623)
T KOG4424|consen  133 IIADVFQKLA------PFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRV-PRYE  205 (623)
T ss_pred             HHHHHHHHhh------hHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhh-hHHH
Confidence            4999999875      68999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhHHHHHhhcc
Q psy11458        135 SLHVQKILTFI  145 (159)
Q Consensus       135 LLL~~Ilk~~~  145 (159)
                      |||+..++..+
T Consensus       206 LLLk~yl~~lp  216 (623)
T KOG4424|consen  206 LLLQDYLLYLP  216 (623)
T ss_pred             HHHHHHHHhCC
Confidence            99999876553

>KOG3519|consensus

Probab=98.87  E-value=2.5e-09  Score=101.97  Aligned_cols=112  Identities=18%  Similarity=0.239  Sum_probs=93.0

Q ss_pred             ecccchhhhcccccCChhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHH
Q psy11458         24 IVSQNDIYAGNDCRWSPGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESL   90 (159)
Q Consensus        24 ~~~~~di~~~n~~~~~~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~l   90 (159)
                      -+++-++|++|.    +++..+|.+|...+             ..||.+|++++++     | .+|.+||.++..+...+
T Consensus       374 ~~~~~~~~f~ni----~~i~~f~~~fl~~L~~~~~~~~~~~~~~~ig~~fL~~~~~-----f-~~ys~yc~~h~~~~~~l  443 (756)
T KOG3519|consen  374 SVNQLDLLFGNI----EDILRFQKEFLKTLEQQINPELIPPSLSEIGPVFLEQLDV-----F-KIYSEYCNNHPKAQKKL  443 (756)
T ss_pred             cHHHHHHHccCH----HHHHHHHHHHHHHHHHhcchhhcchhHhHHHHHHHHhccc-----c-eeechhhhccchHHHHH
Confidence            356778889996    57788888885543             3589999999853     4 56777999999999999


Q ss_pred             HHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCC
Q psy11458         91 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFP  147 (159)
Q Consensus        91 kel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~  147 (159)
                      ... +++++++.|+..|...-+=-+.+|.++|++|.||+ .||||||.++++-+.-+
T Consensus       444 ~~~-~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri-~kYPLll~elld~t~~~  498 (756)
T KOG3519|consen  444 SKL-KKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRI-CKYPLLLNELLDSTPLE  498 (756)
T ss_pred             HHH-hhhhhhhhhhhhhhhhhccccCCchhhhccHHHHh-ccCchhhhhhhhhccCC
Confidence            976 79999999999997765544599999999999999 99999999999988654

>KOG3518|consensus

Probab=98.78  E-value=1.2e-08  Score=90.92  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             HHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHH
Q psy11458         56 EYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSS  135 (159)
Q Consensus        56 IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPL  135 (159)
                      |+.-|++-     ++.| ..|.+||.|+...+.+|-++ .+|+-++.++++-+. ..-..|+|..+|++|+||| .||.|
T Consensus       196 ia~cfve~-----s~ef-e~yieyctny~rmmatl~~~-~q~~ilaka~qerq~-al~hsl~l~ayllkpvqri-lkyhl  266 (521)
T KOG3518|consen  196 IAECFVEK-----SEEF-EDYIEYCTNYHRMMATLTEC-MQNKILAKAFQERQE-ALKHSLPLGAYLLKPVQRI-LKYHL  266 (521)
T ss_pred             HHHHHHhc-----chhH-HHHHHHHhhhHHHHHHHHHH-HHhHHHHHHHHHHHH-HHhcccchhHHHHHHHHHH-HHHHH
Confidence            45555542     2454 78999999999999999987 578888888876443 2335799999999999999 99999


Q ss_pred             hHHHHHhhc---cCCc
Q psy11458        136 LHVQKILTF---IFPW  148 (159)
Q Consensus       136 LL~~Ilk~~---~~~~  148 (159)
                      +|++|.++-   |-|-
T Consensus       267 fle~i~k~l~~~thpe  282 (521)
T KOG3518|consen  267 FLEEIEKHLDKDTHPE  282 (521)
T ss_pred             HHHHHHhcCCCCCChH
Confidence            999999875   6664

>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

Probab=98.58  E-value=1.7e-08  Score=97.51  Aligned_cols=120  Identities=18%  Similarity=0.154  Sum_probs=95.4

Q ss_pred             ccchhhhcccccCChhhHHHH---HHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHH
Q psy11458         26 SQNDIYAGNDCRWSPGYWKIC---NEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNA  102 (159)
Q Consensus        26 ~~~di~~~n~~~~~~~Li~ih---~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~  102 (159)
                      +.++|++.|..     +.+..   +.+..++..||||||++.+      +++.+..|-++|..|.-.+......|+.|+.
T Consensus       535 ~i~~i~avn~k-----~~~AL~~rQ~lsPiv~~I~DifL~~vP------~Fepfiky~a~~~yaky~~erekS~np~fa~  603 (1175)
T COG5422         535 NINEIYAVNSK-----LLKALTNRQCLSPIVNGIADIFLDYVP------KFEPFIKYGASQPYAKYEFEREKSVNPNFAR  603 (1175)
T ss_pred             HHHHHHHhhHH-----HHHHHhhcccccccccchHHHHHhhhh------hhhHHHHhhcccchhheeeeeccccCcchhh
Confidence            45788888842     33332   2234567899999999984      4688999999999999999888889999999


Q ss_pred             HHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC--------Ccchhhhhhhh
Q psy11458        103 FLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF--------PWRLGTIEWFV  157 (159)
Q Consensus       103 fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~--------~~~~~~~~~~~  157 (159)
                      |....+.-...+++.+..+|-.|.-|+ .|||||++.+++=+.-        |-|.-.++-|.
T Consensus       604 Fd~~v~rl~~s~k~~ld~yLtk~~tr~-~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFl  665 (1175)
T COG5422         604 FDHEVERLDESRKLELDGYLTKPTTRL-ARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFL  665 (1175)
T ss_pred             hhHHHHhcchhhhhcccceecCCcccc-hhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHH
Confidence            999999777778999999999999999 9999999998765432        34555555553

>KOG3522|consensus

Probab=98.55  E-value=2e-07  Score=89.76  Aligned_cols=97  Identities=19%  Similarity=0.221  Sum_probs=80.7

Q ss_pred             eeeecccchhhhcccccCChhhHHHHHHHHHHH----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHH
Q psy11458         21 YIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQ----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESL   90 (159)
Q Consensus        21 ~~~~~~~~di~~~n~~~~~~~Li~ih~~~~~~v----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~l   90 (159)
                      .||=+--.+||..     .|++.++|+.|.+.+          +++|+.++++|+.   +....+|..||+|...|...+
T Consensus        36 l~~~~~~~eif~~-----i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~fSk---~~v~~~Y~~y~nn~~~A~~~l  107 (925)
T KOG3522|consen   36 LIDPRDVDEIFQN-----IPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYSFSK---TAVLAAYSKYVNNFKRAKCAL  107 (925)
T ss_pred             ccCCchHHHHHHh-----hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhH---HHHHHHHHHHHhchhHHHHHH
Confidence            3444444455543     389999999997765          4699999999976   467899999999999999999


Q ss_pred             HHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458         91 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus        91 kel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      +..  +.+.|..|++               ++++|  |+ ++|-||++ ++|++.+
T Consensus       108 ~~~--~rpaf~~Fl~---------------l~~kP--r~-P~y~lll~-mlkhtp~  142 (925)
T KOG3522|consen  108 RNK--KRPAFSKFLE---------------LMIKP--RF-PRYELLLQ-MLKHTPL  142 (925)
T ss_pred             HHh--cchHHHHHHH---------------HHhcc--CC-chHHHHHH-HhhcCCc
Confidence            975  4999999998               88999  99 99999999 9999854

>KOG0689|consensus

Probab=98.41  E-value=1.7e-07  Score=85.25  Aligned_cols=108  Identities=15%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             eecccchhhhcccccCChhhHHHHHHH-HHH-------HhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHH
Q psy11458         23 DIVSQNDIYAGNDCRWSPGYWKICNEY-CEY-------QNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERR   94 (159)
Q Consensus        23 ~~~~~~di~~~n~~~~~~~Li~ih~~~-~~~-------v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~   94 (159)
                      +++...+|.++|.    .++++.|... ...       ....|++|+++..     ++--.|..||.|.... +++..  
T Consensus       100 ~lrg~~~iifgni----~~i~~~h~~~fl~e~e~~~r~~~~~~~~f~kh~~-----k~~~~y~~y~q~kp~s-~~~~~--  167 (448)
T KOG0689|consen  100 DLRGKDKIIFGNI----KEIYEFHKKEFLPELERCERDPLELGQAFAKHER-----KNSVLYVTYCQNKPKS-DYLLA--  167 (448)
T ss_pred             hccCCceeeechH----HHHHHhhcccCcchHHHhhhCHHHHHHHHHHHHH-----HhhhhhhhhhcCCCCC-cccce--
Confidence            4566788888885    4566777665 111       2468999999874     3322899999999887 23322  


Q ss_pred             hcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458         95 RKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus        95 kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                        .-.+..|.+.+.+.-. .+++|.|+|++|+||+ +||+|||+++++-+.-
T Consensus       168 --~~~~~~~f~~~~~~~~-~~l~l~~~l~kPiQR~-~kYqlLL~~~~k~~~~  215 (448)
T KOG0689|consen  168 --EYDNEAFFQEYQTQLG-HKLDLSSYLIKPVQRI-MKYQLLLQDFLKFCEK  215 (448)
T ss_pred             --ecccchhhHHHhhhcc-cccccchhhhhhhHHH-HHHHHHHHHHHHHhhh
Confidence              2233445555554322 4899999999999999 9999999999887643

>KOG4240|consensus

Probab=98.27  E-value=1.1e-06  Score=86.21  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             ecccchhhhcccccCChhhHHHHHHHHHH--------HhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHh
Q psy11458         24 IVSQNDIYAGNDCRWSPGYWKICNEYCEY--------QNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRR   95 (159)
Q Consensus        24 ~~~~~di~~~n~~~~~~~Li~ih~~~~~~--------v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~k   95 (159)
                      +.|-.+|+.+|.    +++.+.|+..+-.        .+.+|+-|++|.+     .| ++|..||-|...+..+.+.. .
T Consensus       673 ~Lnk~~~ifgnm----eeiy~fhn~~~L~eLe~y~~~pE~Vg~~fle~~d-----~f-qly~~Yc~nke~S~ql~~~~-a  741 (1025)
T KOG4240|consen  673 LLNKKEIIFGNM----EEIYEFHNDIFLSELEKYEQLPEDVGHCFLERAD-----DF-QLYAKYCQNKELSNQLIRLH-A  741 (1025)
T ss_pred             ccchHHHHHhhH----HHHHHHHhhHHHHHhhhhccCHHHHHHHHHHHHH-----HH-HHHHHHHhCCcchHHHHHhc-c
Confidence            445678899995    6788899988532        3579999999873     45 99999999999888777743 3


Q ss_pred             cCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHh
Q psy11458         96 KDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKIL  142 (159)
Q Consensus        96 kn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk  142 (159)
                      .-+-|    .+|+..-.- .+.+.+.|++|+||| |||-|||+.+++
T Consensus       742 ~~~ff----~e~qr~~~l-~l~~~S~l~kpvqri-tkYqlllkell~  782 (1025)
T KOG4240|consen  742 GCSFF----QEIQRRHGL-ELSISSYLIKPVQRI-TKYQLLLKELLK  782 (1025)
T ss_pred             ccccc----HHHHHHhhh-hhhhHHHHhHHHHHH-HHHHHHHHHHHH
Confidence            32233    344443221 338899999999999 999999999987

>KOG3524|consensus

Probab=98.12  E-value=4.4e-06  Score=79.64  Aligned_cols=98  Identities=18%  Similarity=0.147  Sum_probs=79.1

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCC
Q psy11458         40 PGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLK  119 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~  119 (159)
                      ++..++|.+.-+.+.+...++.+-     .+.+..+|..|..-...-.+.++...+++|+|.+|++.=++.|.|.|++|.
T Consensus       438 l~I~~vh~k~~D~l~~l~~nw~e~-----k~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~  512 (850)
T KOG3524|consen  438 LLIVVVHKKNDDKLLDLAQNWIEA-----KEELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLT  512 (850)
T ss_pred             hhhhhhhccchHHHHHHHHhhHHH-----HHHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhccc
Confidence            345555666555554444443332     256778888888888888889998899999999999999999999999999


Q ss_pred             CcccchhhhhhhhhHHhHHHHHhh
Q psy11458        120 DIIPTGMLREQTSYSSLHVQKILT  143 (159)
Q Consensus       120 d~L~~PmQRI~TKYPLLL~~Ilk~  143 (159)
                      |+++.|+||+ ...-|||..+.|.
T Consensus       513 dlmirpvqrl-psvilllndl~k~  535 (850)
T KOG3524|consen  513 DLMIRPVQRL-PSVILLLNDMAKK  535 (850)
T ss_pred             chhccchhhh-hHHHHHHHHHHhh
Confidence            9999999999 9999999999883

>KOG2070|consensus

Probab=97.70  E-value=9.8e-05  Score=68.62  Aligned_cols=94  Identities=11%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHHHHH----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQ----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      ++++..|+-+++.+          .++|-.|+.-.     +.|+.+|..||.|+..|++.|++.   ..++..|++.-..
T Consensus       150 eeI~t~~qdL~~qlEec~~~~~~q~RVGg~fln~a-----p~mkt~~~aYcanHP~AV~VL~k~---~dELek~me~Qga  221 (661)
T KOG2070|consen  150 EEICTFQQDLVQQLEECTKLPEAQQRVGGCFLNLA-----PQMKTLYLAYCANHPSAVNVLTKH---SDELEKFMETQGA  221 (661)
T ss_pred             HHhHhHHHHHHHHHHHhhcCchhhhhhhhHHHhhh-----HHHHHHHHHHHhcCchhhhHHHHh---HHHHHHHHHhcCC
Confidence            55666666666554          26899998754     589999999999999999999964   5567777765433


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhh
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILT  143 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~  143 (159)
                      . .-+=|-|.-=|.+|..|+ -|||-||+.+=++
T Consensus       222 s-spg~lvLttgLSkPfrrl-dkY~~lLQELERh  253 (661)
T KOG2070|consen  222 S-SPGILVLTTGLSKPFRRL-DKYPTLLQELERH  253 (661)
T ss_pred             C-CCCeEEEecccchHHHHH-HHHHHHHHHHHHh
Confidence            2 224566777789999999 9999999987544

>KOG3531|consensus

Probab=97.04  E-value=0.00071  Score=66.01  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHh------------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHH
Q psy11458         42 YWKICNEYCEYQN------------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAF  103 (159)
Q Consensus        42 Li~ih~~~~~~v~------------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~f  103 (159)
                      |.+-|+.+...++                  +||||+|+...+      +++|.+|-..+.+++..+....+...+|.++
T Consensus       584 l~k~h~~fLk~ieeria~weGrsnani~~~~~igDVmLk~m~~------l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v  657 (1036)
T KOG3531|consen  584 LTKFHEGFLKEIEERIALWEGRSNANIVIEQRIGDVMLKNMRS------LKITTTTTQRHAETLTTLTTTSKVLTRLEAV  657 (1036)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCCCceeeeeccCCcchhhhhc------cchhhhhHHhHHHHHHHHhhcchhhhhHHhh
Confidence            8888988876542                  489999987632      6799999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        104 LTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       104 l~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      .++.|....| -|.+..||++|++|+ .-|-|+|+.+..+|.
T Consensus       658 ~kefelqkvc-yLP~~~fllkpL~rl-lhyq~~LeRLc~~~~  697 (1036)
T KOG3531|consen  658 YKEFELQKVC-YLPLNTFLLKPLSRL-LHYQLALERLCGHYS  697 (1036)
T ss_pred             hccHHhhhcc-ccccchhhhccccHH-HHHHHHHHHhhcccC
Confidence            9999999999 799999999999999 999999999999883

>KOG3524|consensus

Probab=81.57  E-value=1.1  Score=43.74  Aligned_cols=97  Identities=7%  Similarity=-0.024  Sum_probs=65.1

Q ss_pred             ChhhHHHHHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCC
Q psy11458         39 SPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQL  118 (159)
Q Consensus        39 ~~~Li~ih~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L  118 (159)
                      .+.+.++|..+-+. ..++++.+..+-...  ...+....||..+   ...+-.-++.|+.+-+|.+.=..++.||+-+.
T Consensus       448 ~D~l~~l~~nw~e~-k~el~kayppyvnff--et~ke~~~~cdre---~prfhaflKinq~kpecgRq~l~dlmirpvqr  521 (850)
T KOG3524|consen  448 DDKLLDLAQNWIEA-KEELKKAYPPYVNFF--ETIKELFDKCDRE---NPRFHAFLKINQSKPECGRQKLTDLMIRPVQR  521 (850)
T ss_pred             hHHHHHHHHhhHHH-HHHHHHhccchhhHH--HHhHHHHHHHhcc---chHHHHHHHccccchhhhhhcccchhccchhh
Confidence            35566666666443 367777666553210  1223345566544   44556666788999999999999999999999


Q ss_pred             CCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        119 KDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       119 ~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      -..+++|+||| .|   +..+-+|+.+
T Consensus       522 lpsvilllndl-~k---~s~N~dk~~l  544 (850)
T KOG3524|consen  522 LPSVILLLNDM-AK---KSDNKDKNNL  544 (850)
T ss_pred             hhHHHHHHHHH-Hh---hccCcchhhH
Confidence            99999999999 88   4444445443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1txd_A	385	Crystal Structure Of The Dh/ph Domains Of Leukemia-		4e-14
3odw_A	536	Crystal Structure Of The Linker-DhPH DOMAINS OF P11		2e-13
3odx_A	417	Crystal Structure Of An N-Terminally Truncated Link		1e-12
3p6a_A	377	Crystal Structure Of The DhPH DOMAINS OF P115-Rhoge		1e-12
3odo_A	375	Crystal Structure Of The DhPH DOMAINS OF P115-Rhoge		1e-12
3kz1_A	383	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-10
1xcg_A	368	Crystal Structure Of Human Rhoa In Complex With DhP		1e-10
3t06_A	418	Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF		1e-10

>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of Leukemia-associated Rhogef Length = 385

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 43/68 (63%)
Query: 61  MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
           + +F G           TFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKD
Sbjct: 106 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 165
Query: 121 IIPTGMLR 128
           IIPT M R
Sbjct: 166 IIPTQMQR 173

>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF P115-Rhogef Length = 536

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64  FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDG            FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 264 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 323
Query: 124 TGMLR 128
           T M R
Sbjct: 324 TEMQR 328

>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH DOMAINS OF P115-Rhogef Length = 417

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64  FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDG            FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 151 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 210
Query: 124 TGMLR 128
           T M R
Sbjct: 211 TEMQR 215

>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef (R399e Mutant) Length = 377

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64  FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDG            FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 111 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 170
Query: 124 TGMLR 128
           T M R
Sbjct: 171 TEMQR 175

>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef Length = 375

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64  FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
           FDG            FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+IP
Sbjct: 109 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 168
Query: 124 TGMLR 128
           T M R
Sbjct: 169 TEMQR 173

>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 383

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 40  PGYWKICNEYCEYQNQEYQ----------MNMEYFDGXXXXXXXXXXXTFCSRQQIALES 89
           P   +I N +CE   +  +          + +  FDG            FCS Q IALE 
Sbjct: 75  PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 134
Query: 90  LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
           ++ ++RK+SR   F+ EAE +P CRRLQL+D+I + M R
Sbjct: 135 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 173

>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 368

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 40  PGYWKICNEYCEYQNQEYQ----------MNMEYFDGXXXXXXXXXXXTFCSRQQIALES 89
           P   +I N +CE   +  +          + +  FDG            FCS Q IALE 
Sbjct: 70  PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 129
Query: 90  LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
           ++ ++RK+SR   F+ EAE +P CRRLQL+D+I + M R
Sbjct: 130 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 168

>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH N-Terminal Regulatory Elements In Complex With Human Rhoa Length = 418

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 40  PGYWKICNEYCEYQNQEYQ----------MNMEYFDGXXXXXXXXXXXTFCSRQQIALES 89
           P   +I N +CE   +  +          + +  FDG            FCS Q IALE 
Sbjct: 112 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 171
Query: 90  LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
           ++ ++RK+SR   F+ EAE +P CRRLQL+D+I + M R
Sbjct: 172 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-14
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	1e-13
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-13
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-13
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	4e-13
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-11
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	5e-10
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	3e-09
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	4e-07
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	5e-06
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	4e-04

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368

 Score = 67.6 bits (165), Expect = 4e-14
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 62  EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
             FDG A E  Q+ AA FCS Q IALE ++ ++RK+SR   F+ EAE +P CRRLQL+D+
Sbjct: 102 ARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDL 161

Query: 122 IPTGMLREQTSYSSLHVQKIL 142
           I + M R  T Y  L ++ I+
Sbjct: 162 IISEMQR-LTKY-PLLLESII 180

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 62  EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
             FDGA G  FQ+ ++ FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+
Sbjct: 109 ARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDM 168

Query: 122 IPTGMLREQTSYSSLHVQKIL 142
           IPT M R  T Y  L +Q I 
Sbjct: 169 IPTEMQR-LTKY-PLLLQSIG 187

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 62  EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
             FDGA G  FQ+ ++ FCSRQ  ALE L+ ++RKD R  AF+ EAE  P CRRLQLKD+
Sbjct: 262 ARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDM 321

Query: 122 IPTGMLREQTSYSSLHVQKIL 142
           IPT M R  T Y  L +Q I 
Sbjct: 322 IPTEMQR-LTKY-PLLLQSIG 340

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 62  EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
             FDG A E  Q+ AA FCS Q IALE ++ ++RK+SR   F+ EAE +P CRRLQL+D+
Sbjct: 144 ARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDL 203

Query: 122 IPTGMLREQTSYSSLHVQKIL 142
           I + M R  T Y  L ++ I+
Sbjct: 204 IISEMQR-LTKY-PLLLESII 222

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 39/67 (58%), Positives = 47/67 (70%)

Query: 62  EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
            +F G   E  + AAATFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQLKDI
Sbjct: 107 TWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDI 166

Query: 122 IPTGMLR 128
           IPT M R
Sbjct: 167 IPTQMQR 173

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 72  FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
             +A   FCS Q      L+++  +D+    FL +   +P C+ + L   +   M R
Sbjct: 115 HMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQR 171

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 72  FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
             +    FCS Q      ++++  +      F+    ++P C+ + L   I   M R
Sbjct: 170 HMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQR 226

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 72  FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
              +  ++CS Q  A   L + +++D R+  FL     +P  R+L L + +     R
Sbjct: 104 CLSSYDSYCSNQVAAKALL-DHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSR 159

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 11/59 (18%), Positives = 20/59 (33%)

Query: 70  EAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
           +        +CS+ + A + L         +   L E        R  L+D++   M R
Sbjct: 277 KERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 335

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 77  ATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
             +CS+ + A + L +       +   L E        R  L+D++   M R
Sbjct: 112 GRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 163

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 13/43 (30%)

Query: 78  TFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
           T   +    L  L E      RL A + E E +        K 
Sbjct: 122 THILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKH 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.89
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	99.88
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	99.88
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.87
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.85
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	99.85
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	99.84
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	99.82
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	99.82
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.8
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	99.79
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	99.78
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.77
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.77
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.76
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	99.75
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	99.71
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	99.69
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	99.67
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	99.61

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=99.89  E-value=1.2e-23  Score=177.78  Aligned_cols=106  Identities=42%  Similarity=0.622  Sum_probs=98.6

Q ss_pred             hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      ++++++|..|...++          .|||+|+++|++.+++.++++|..||+|+..|.++++++.++|+.|++|+++|++
T Consensus        70 ~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~  149 (368)
T 1xcg_A           70 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES  149 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHccchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            789999999987653          5899999999877777889999999999999999999998899999999999999


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      +|.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus       150 ~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~~  185 (368)
T 1xcg_A          150 HPQCRRLQLRDLIISEMQRL-TKYPLLLESIIKHTEG  185 (368)
T ss_dssp             SGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred             ChhhccCChHHHhhhHhhhh-hhHHHHHHHHHHhCCC
Confidence            99999999999999999999 9999999999998854

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=99.88  E-value=2.8e-23  Score=177.20  Aligned_cols=105  Identities=42%  Similarity=0.584  Sum_probs=94.9

Q ss_pred             hhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE  106 (159)
Q Consensus        40 ~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~  106 (159)
                      ++++++| .+...+             ..|||+|++++++..++.|.++|..||+|+..|.+.+++++++|+.|++|+++
T Consensus        73 ~~I~~~h-~fL~~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~  151 (385)
T 1txd_A           73 EDILQLH-IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQD  151 (385)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHhhcCCCcccHHHHHHHHccchhHHHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHH
Confidence            6789999 664433             24899999999876667888999999999999999999998999999999999


Q ss_pred             HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      |+++|.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus       152 ~~~~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~~  190 (385)
T 1txd_A          152 AESNPLCRRLQLKDIIPTQMQRL-TKYPLLLDNIAKYTEW  190 (385)
T ss_dssp             HHHSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTCCS
T ss_pred             HHhCccccCCChHHHhhhHHhHh-hhHHHHHHHHHhhCCC
Confidence            99999999999999999999999 9999999999998743

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=99.88  E-value=4.2e-23  Score=174.72  Aligned_cols=105  Identities=40%  Similarity=0.575  Sum_probs=97.5

Q ss_pred             hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      ++++++|..|...++           .|||+|++++++..|+.|.++|..||+|+..|.+++++.+++|+.|+.|+++|+
T Consensus        76 ~~I~~~h~~fl~~L~~~~~~~~~~~~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~  155 (377)
T 3p6a_A           76 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAE  155 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            679999999876542           589999999988777788899999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      ++|.|++++|.++|++|+||| +||||||++|++++.
T Consensus       156 ~~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~  191 (377)
T 3p6a_A          156 SRPRCRRLQLKDMIPTEMQRL-TKYPLLLQSIGQNTE  191 (377)
T ss_dssp             TSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTCC
T ss_pred             hCcccCCCCHHHHHHHHHHHh-hhHHHHHHHHHhhCC
Confidence            999999999999999999999 999999999999874

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=173.66  Aligned_cols=106  Identities=42%  Similarity=0.622  Sum_probs=98.5

Q ss_pred             hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      ++++++|..|...++          .|||+|+++|++..++.++++|..||+|+..|.++++++.++|+.|+.|+++|++
T Consensus       112 ~~I~~~h~~fl~~L~~~~~~~~~~~~ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~  191 (418)
T 3t06_A          112 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES  191 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCSSCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHhcchhhhHHHhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            689999999987663          5899999999887778889999999999999999999998999999999999999


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      +|.|++++|.++|++|+||| +||||||++|++++.-
T Consensus       192 ~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~~  227 (418)
T 3t06_A          192 HPQCRRLQLRDLIISEMQRL-TKYPLLLESIIKHTEG  227 (418)
T ss_dssp             SGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred             CcccccCCHHHHHhhHHHHH-HHHHHHHHHHHHhCCC
Confidence            99999999999999999999 9999999999998753

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.85  E-value=5.1e-22  Score=161.87  Aligned_cols=99  Identities=13%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             hhhHHHHHHHHHHHh-------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE  106 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~  106 (159)
                      ++++++|..|...++             .||++|+.+++     . +++|..||+|+..|.+.+++..++++.|+.|+++
T Consensus       131 ~~i~~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~  204 (283)
T 3jv3_A          131 KELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLP-----H-MQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKR  204 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGG-----G-GTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHh-----h-chhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            679999999977653             38999999874     3 4789999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      |+.+|.|++++|.++|++|+||| +||||||++|+|+|.
T Consensus       205 ~~~~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~  242 (283)
T 3jv3_A          205 LAMDPRCKGMPLSSFILKPMQRV-TRYPLIIKNILENTP  242 (283)
T ss_dssp             HTTSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHTTSC
T ss_pred             HHhCccccCCCHHHHhhhhHHHh-cchHHHHHHHHhcCC
Confidence            99999999999999999999999 999999999999873

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=99.85  E-value=1.2e-21  Score=176.16  Aligned_cols=105  Identities=40%  Similarity=0.585  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHHH-----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQ-----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v-----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      ++++++|..|...+           ..|||+|++++++..++.|.++|..||+|+..|.+++++++++|+.|+.|+++|+
T Consensus       229 e~I~~~h~~fL~~L~~~~~~~~~~~~~Igdifl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~  308 (536)
T 3odw_A          229 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAE  308 (536)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHcchhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            67999999987654           2589999999987777778899999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      ++|.|++++|.+||++|+||| +||||||++|+|++.
T Consensus       309 ~~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~LlK~T~  344 (536)
T 3odw_A          309 SRPRCRRLQLKDMIPTEMQRL-TKYPLLLQSIGQNTE  344 (536)
T ss_dssp             TSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHTTCC
T ss_pred             hCcccccCCHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Confidence            999999999999999999999 999999999999874

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=99.84  E-value=1.5e-21  Score=164.11  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=77.8

Q ss_pred             hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      ++++++|..|...++          .|||+|+++++     .| ++|..||+|+..|.++++++ ++|++|++|+++|++
T Consensus        68 ~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~-~~~~~f~~fl~~~~~  140 (346)
T 2z0q_A           68 DSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLP-----CL-SSYDSYCSNQVAAKALLDHK-KQDHRVQDFLQRCLE  140 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTSCCSCCHHHHHHHGG-----GG-GHHHHHHHHHHHHHHHHHHH-TTCHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHhh-----HH-HHHHHHHHCHHHHHHHHHHh-hcCHHHHHHHHHHHh
Confidence            789999999987664          48999999984     34 79999999999999999985 899999999999999


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      +|.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus       141 ~~~~~~l~L~~~L~~PvQRi-~rY~LLL~~llk~t~~  176 (346)
T 2z0q_A          141 SPFSRKLDLWNFLDIPRSRL-VKYPLLLREILRHTPN  176 (346)
T ss_dssp             -------CTTTGGGHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred             CccCCCCCHHHHHHHHHHHH-hhHHHHHHHHHhcCCC
Confidence            99999999999999999999 9999999999998854

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=99.82  E-value=7.4e-21  Score=163.52  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             hhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhC
Q psy11458         40 PGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN  110 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~  110 (159)
                      ++++++|..|...++         .|||+|+++.+     .| ++|..||+|+..|.++++++.++|+.|++|+++|+.+
T Consensus        72 ~~i~~~h~~fl~~L~~~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~  145 (406)
T 2vrw_B           72 EELFSVHTHFLKELKDALAGPGATTLYQVFIKYKE-----RF-LVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQR  145 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGGGTTHHHHHHHHTT-----GG-GHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-----HH-HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Confidence            789999999977653         49999999874     44 7999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458        111 PLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF  144 (159)
Q Consensus       111 p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~  144 (159)
                      |.|++++|.++|++|+||| +||||||++|+|+|
T Consensus       146 ~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t  178 (406)
T 2vrw_B          146 ANNGRFTLRDLLMVPMQRV-LKYHLLLQELVKHT  178 (406)
T ss_dssp             HHTTSCCHHHHTTHHHHHH-TTHHHHHHHHHHHC
T ss_pred             cccCCcchHHHhhhHHHHH-hhHHHHHHHHHHhC
Confidence            9999999999999999999 99999999999988

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1

Probab=99.82  E-value=8.4e-21  Score=150.46  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=89.9

Q ss_pred             cchhhhcccccCChhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458         27 QNDIYAGNDCRWSPGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK   96 (159)
Q Consensus        27 ~~di~~~n~~~~~~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk   96 (159)
                      ...||+ |.    ++++++|..|...++          .|||+|+++++     .|.++|..||+|+..|.+.+++.   
T Consensus        54 ~~~iF~-ni----~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~-----~f~~~Y~~Y~~n~~~a~~~l~~~---  120 (209)
T 1by1_A           54 ISYLMG-NL----EEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMP-----QMKTLYLTYCANHPSAVNVLTEH---  120 (209)
T ss_dssp             GGTTHH-HH----HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHc-CH----HHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh---
Confidence            445555 53    789999999987663          59999999873     56569999999999999999976   


Q ss_pred             CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458         97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus        97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      ++.|+.|++.|+ .+.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus       121 ~~~f~~fl~~~~-~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~Llk~t~~  168 (209)
T 1by1_A          121 SEELGEFMETKG-ASSPGILVLTTGLSKPFMRL-DKYPTLLKELERHMED  168 (209)
T ss_dssp             TTTHHHHTTTTC-CCSSTTTHHHHHTTSTTTGG-GTHHHHHHHHHHSSCC
T ss_pred             CHHHHHHHHHhc-CCCCCcCCHHHHhhHHHHHH-hHHHHHHHHHHhhCCC
Confidence            789999999985 46789999999999999999 9999999999998843

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=2.5e-20  Score=160.60  Aligned_cols=99  Identities=16%  Similarity=0.043  Sum_probs=85.1

Q ss_pred             hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      ++++++|..|...++          .|||+|+++++     . +++|..||+|+..|.+++++.+++++.|++|+++|++
T Consensus        80 ~~I~~~h~~fL~~L~~~~~~~~~~~~ig~ifl~~~~-----~-~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~  153 (434)
T 3mpx_A           80 PAIHDLHQGILEELEERLSNWESQQKVADVFLAREQ-----G-FDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQ  153 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTCCCCTHHHHTTTT-----T-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhhH-----H-HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHc
Confidence            689999999977653          48999999874     3 4699999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      +|.|++++|.++|++|+||| +||||||++|+++|.
T Consensus       154 ~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~  188 (434)
T 3mpx_A          154 SVQGGSQTAKHRLLRVVQRL-FQYQVLLTDYLNNLC  188 (434)
T ss_dssp             C------CHHHHHHHHHHHH-HHHHHHHHHHHTTSC
T ss_pred             CcccCCCCHHHHHhhhHHhh-hHHHHHHHHHHhcCC
Confidence            99999999999999999999 999999999999874

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=99.79  E-value=1e-19  Score=157.24  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=89.5

Q ss_pred             hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      ++++++|..|...++           .||++|+++++     .| ++|..||+|+..|.+.++++. ++++|+.|+++|+
T Consensus        91 ~~I~~~h~~fL~~Le~~~~~~~~~~~~ig~ifl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~fl~~~~  163 (402)
T 2dfk_A           91 EDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQD-----GF-WIYSEYCNNHLDACMELSKLM-KDSRYQHFFEACR  163 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTTT-----GG-GHHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHh-----hh-HHHHHHHHhhHHHHHHHHHHH-cChHHHHHHHHHH
Confidence            689999999976653           48999999874     45 899999999999999999875 5799999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      ..+.|++++|.++|++|+||| +||||||++|+++|.-
T Consensus       164 ~~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~Llk~t~~  200 (402)
T 2dfk_A          164 LLQQMIDIAIDGFLLTPVQKI-CKYPLQLAELLKYTAQ  200 (402)
T ss_dssp             HHTTCCSCCHHHHHTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred             hhhhcccCCHHHHHhHHHHHH-HHHHHHHHHHHhhCCC
Confidence            999999999999999999999 9999999999998854

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=99.78  E-value=7.5e-20  Score=155.61  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHHH-----------------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458         40 PGYWKICNEYCEYQ-----------------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK   96 (159)
Q Consensus        40 ~~Li~ih~~~~~~v-----------------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk   96 (159)
                      ++++++|..|...+                       ..||++|+.+.+     .| ++|..||+|+..|.+++++. ++
T Consensus        60 ~~I~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~-~~  132 (377)
T 1foe_A           60 TEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD-----RF-KLYSAFCASHTKVPKVLVKA-KT  132 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTT-----GG-GGHHHHHHHTTTHHHHHTTT-TT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHHHHHHHHH-----HH-HHHHHHHHhHHHHHHHHHHH-hc
Confidence            68999999886654                       258999999863     44 79999999999999999875 89


Q ss_pred             CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458         97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus        97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      |+.|++|+++|+..+ |++++|.++|++|+||| +||||||++|+++|.
T Consensus       133 ~~~f~~fl~~~~~~~-~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~  179 (377)
T 1foe_A          133 DTAFKAFLDAQNPRQ-QHSSTLESYLIKPIQRV-LKYPLLLRELFALTD  179 (377)
T ss_dssp             CHHHHHHHHHHCTTC-CGGGSHHHHTTHHHHHH-TTHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHhhcc-ccCcCHHHHhccchhhh-ccHHHHHHHHHHhCC
Confidence            999999999998866 89999999999999999 999999999999885

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.77  E-value=1.9e-19  Score=157.16  Aligned_cols=99  Identities=12%  Similarity=0.099  Sum_probs=89.1

Q ss_pred             hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      ++++++|..|...++           .||++|+++++     .| ++|..||+|+..|.+.++++. ++++|+.|+++|+
T Consensus       168 ~~I~~~h~~fL~~Le~~~~~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~f~~~~~  240 (466)
T 2pz1_A          168 EDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQA-----DF-QIYSEYCNNHPNACVELSRLT-KLSKYVYFFEACR  240 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTHH-----HH-TTHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHhhH-----HH-HHHHHHHHhhHHHHHHHHHHH-hccHHHHHHHHHH
Confidence            679999999977653           48999999873     55 899999999999999999875 5789999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      ..+.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus       241 ~~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~~  277 (466)
T 2pz1_A          241 LLQKMIDISLDGFLLTPVQKI-CKYPLQLAELLKYTHP  277 (466)
T ss_dssp             HHHTCCSCCHHHHHHHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred             HhhhhccCCHHHHhhhHHHHh-hhHHHHHHHHHhcCCC
Confidence            999999999999999999999 9999999999998854

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.77  E-value=1.7e-20  Score=163.53  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE  106 (159)
Q Consensus        40 ~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~  106 (159)
                      ++++++|..|...+             ..|||+|+.+++     . +++|..||+|+..|.+.+++..++|+.|+.|+++
T Consensus        76 ~~i~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~  149 (510)
T 3jzy_A           76 KELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELS-----H-MQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKK  149 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHhH-----H-HHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            55777777775433             468999999874     3 4799999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      |+.+|.|++++|.++|++|+||| +||||||++|+|+|..
T Consensus       150 ~~~~~~~~~l~L~~~L~~PvQRi-~rY~LLL~~llk~t~~  188 (510)
T 3jzy_A          150 LASDPRCKGMPLSSFLLKPMQRI-TRYPLLIRSILENTPE  188 (510)
T ss_dssp             ----------------------------------------
T ss_pred             HHhCccccCCCHHHHhChhhhhh-cCcHHHHHHHHhcCCC
Confidence            99999999999999999999999 9999999999998743

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.76  E-value=1.8e-19  Score=162.53  Aligned_cols=99  Identities=17%  Similarity=0.246  Sum_probs=91.3

Q ss_pred             hhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhC
Q psy11458         40 PGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN  110 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~  110 (159)
                      ++++++|..|...++         .||++|+++.+     .| ++|..||+|+..|.++++++.++++.|++|+++|+++
T Consensus       244 ~~I~~~h~~fL~~L~~~~~~~~~~~ig~if~~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~  317 (587)
T 3ky9_A          244 EDLLRVHTHFLKEMKEALGTPGAANLYQVFIKYKE-----RF-LVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQR  317 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSTTCSHHHHHHHTTT-----GG-GHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH-----hc-chHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence            679999999977653         48999999873     44 7999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        111 PLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       111 p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      |.|++++|.++|++|+||| +||||||++|+|++.
T Consensus       318 ~~~~~l~L~s~Li~PvQRi-~rY~LLL~~Llk~T~  351 (587)
T 3ky9_A          318 ANNGRFTLRDLLMVPMQRV-LKYHLLLQELVKHTQ  351 (587)
T ss_dssp             HHSSSCCHHHHHHHHHHHH-TTHHHHHHHHHHTCC
T ss_pred             cccCCCCHHHHHhHHHHHH-HHHHHHHHHHHhcCC
Confidence            9999999999999999999 999999999999874

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=99.75  E-value=1.5e-19  Score=152.33  Aligned_cols=100  Identities=6%  Similarity=-0.099  Sum_probs=86.2

Q ss_pred             hhhHHHHHHHHHHHh-------------HHHHHHHhhchhhhhHHHHHhHhhhhccH--HHHHHHHHHHHhcCHhHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQ--QIALESLRERRRKDSRLNAFL  104 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq--~~A~~~lkel~kkn~~F~~fl  104 (159)
                      ++++++|..|...++             .|||+|+++.+.    .++++|..||+|+  ..|.+.++++ +++++|+.|+
T Consensus        53 ~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~----~~f~~Y~~Y~~n~~~~~a~~~l~~~-~~~~~f~~~l  127 (354)
T 1dbh_A           53 VDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEE----LAFDPYESYARDILRPGFHDRFLSQ-LSKPGAALYL  127 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHT----TTTHHHHHHHHHHTSTTHHHHHHHH-HHSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHhHH----hhhhHHHHHHHhccchHHHHHHHHH-hcChHHHHHH
Confidence            789999999977654             299999997631    1358999999999  5667999987 6899999999


Q ss_pred             HH-HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        105 TE-AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       105 ~~-ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      +. |+..+.|++++|.++|++|+||| +||||||+.|+|+|.
T Consensus       128 ~~~~~~~~~~~~~~L~~~Li~PvQRi-~rY~LLL~~llk~t~  168 (354)
T 1dbh_A          128 QSIGEGFKEAVQYVLPRLLLAPVYHC-LHYFELLKQLEEKSE  168 (354)
T ss_dssp             HHHCTTHHHHHHHTHHHHTTHHHHHH-HHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh-chHHHHHHHHHhcCC
Confidence            88 55678899999999999999999 999999999999883

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=99.71  E-value=4.2e-18  Score=144.60  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             hhhhcccccCChhhHHHHH-HHHHHHh-------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhH
Q psy11458         29 DIYAGNDCRWSPGYWKICN-EYCEYQN-------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRL  100 (159)
Q Consensus        29 di~~~n~~~~~~~Li~ih~-~~~~~v~-------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F  100 (159)
                      +.+++|.    ++++++|+ .|...++       .|||+|+++++     .| ++|..||+|+..|.+++++. +++   
T Consensus        59 ~~iF~ni----~~I~~~h~~~fl~~Le~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~-~~~---  124 (353)
T 1kz7_A           59 NILFGNM----EEIYHFHNRIFLRELESCIDCPELVGRCFLERME-----EF-QIYEKYCQNKPRSESLWRQC-SDC---  124 (353)
T ss_dssp             HHHHTTH----HHHHHHHHHTHHHHHHTTTTCGGGHHHHHHTTTT-----GG-GHHHHHHHHHHHHHHHHHHH-TTC---
T ss_pred             HHHHhCH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhH-----HH-HHHHHHHhChHHHHHHHHHh-hcc---
Confidence            3445563    78999996 7877664       69999999874     45 89999999999999999876 444   


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        101 NAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                       .|+++|+.. .|++++|.++|++|+||| +||||||++|+|++.
T Consensus       125 -~f~~~~~~~-~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~  166 (353)
T 1kz7_A          125 -PFFQECQKK-LDHKLSLDSYLLKPVQRI-TKYQLLLKEMLKYSK  166 (353)
T ss_dssp             -HHHHHHHHH-HTCSSCHHHHHTHHHHHH-HHHHHHHHHHHHTCT
T ss_pred             -hHHHHHHHh-cCCCCCHHHHHHHHHHHH-HHHHHHHHHHHhccC
Confidence             566777765 489999999999999999 999999999999875

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=99.69  E-value=1.2e-17  Score=139.00  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=81.1

Q ss_pred             hhhhcccccCChhhHHHHHH-HHHHHh-------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhH
Q psy11458         29 DIYAGNDCRWSPGYWKICNE-YCEYQN-------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRL  100 (159)
Q Consensus        29 di~~~n~~~~~~~Li~ih~~-~~~~v~-------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F  100 (159)
                      +.+++|.    ++++++|.+ |...++       .|||+|+++++     .| ++|..||+|+..|.+++++..      
T Consensus        55 ~~iF~ni----~~i~~~h~~~fl~~L~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~~------  118 (311)
T 1nty_A           55 LIIFGNM----QEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWAD-----KF-QMYVTYCKNKPDSTQLILEHA------  118 (311)
T ss_dssp             HHHHTTH----HHHHHHHHHTHHHHHHHTTTCGGGTHHHHHHTTT-----TT-HHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHhhcCH----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----Hh-HHHHHHHhCcHHHHHHHHHHH------
Confidence            4445563    789999996 877653       69999999874     44 899999999999999997642      


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        101 NAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      ..|++.|++.+. .+++|.++|++|+||| +||||||++|+|+|.
T Consensus       119 ~~f~~~~~~~~~-~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~  161 (311)
T 1nty_A          119 GSYFDEIQQRHG-LANSISSYLIKPVQRI-TKYQLLLKELLTCCE  161 (311)
T ss_dssp             TTHHHHHHHHHT-CSSCHHHHHTHHHHHH-HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcc-CCCCHHHHhhhhHHHH-HHHHHHHHHHHHhCC
Confidence            356667777664 4799999999999999 999999999999884

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=99.67  E-value=1.7e-17  Score=140.90  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=80.7

Q ss_pred             hhhhcccccCChhhHHHHHH-HHHHHh-------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhH
Q psy11458         29 DIYAGNDCRWSPGYWKICNE-YCEYQN-------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRL  100 (159)
Q Consensus        29 di~~~n~~~~~~~Li~ih~~-~~~~v~-------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F  100 (159)
                      +.+++|.    ++++++|.. |...++       .|||+|+++.+     .| ++|..||+|+..|.+++++..  ++.|
T Consensus        56 ~~iF~ni----~~I~~~h~~~fl~~L~~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~--~~~f  123 (354)
T 2rgn_B           56 RIVFGNI----QQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHER-----RL-HMYVVYCQNKPKSEHVVSEFG--DSYF  123 (354)
T ss_dssp             HHHHTTH----HHHHHHHHHTHHHHHHHHHSCGGGHHHHHHHTTT-----TT-HHHHHHHHTSHHHHHHHTTTS--HHHH
T ss_pred             HHHhhCH----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhHH-----HH-HHHHHHHhCcHHHHHHHHHHH--HHHH
Confidence            4445563    789999998 776653       59999999874     45 899999999999999998763  3445


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        101 NAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      +++    .+ +.|++++|.++|++|+||| +||||||++|+|+|.
T Consensus       124 ~~~----~~-~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~  162 (354)
T 2rgn_B          124 EEL----RQ-QLGHRLQLNDLLIKPVQRI-MKYQLLLKDFLKYYN  162 (354)
T ss_dssp             HHH----HH-HHCCSSCHHHHTTHHHHHH-TSHHHHHHHHHHHTS
T ss_pred             HHH----HH-hcCCCCCHHHHhhhHHHHH-hHHHHHHHHHHHhCC
Confidence            444    43 4689999999999999999 999999999999885

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=99.61  E-value=2.5e-17  Score=158.24  Aligned_cols=105  Identities=6%  Similarity=-0.119  Sum_probs=89.2

Q ss_pred             hhcccccCChhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccH--HHHHHHHHHHHh
Q psy11458         31 YAGNDCRWSPGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQ--QIALESLRERRR   95 (159)
Q Consensus        31 ~~~n~~~~~~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq--~~A~~~lkel~k   95 (159)
                      +++|.    ++++++|..|...+             ..|||+|+++.+.    ..+.+|..||+|+  ..|.+.++++. 
T Consensus       245 IF~Ni----~~I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~----~~F~~Y~~Yc~ny~~~~a~~~l~~l~-  315 (1049)
T 3ksy_A          245 IFSRI----VDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEE----LAFDPYESYARDILRPGFHDRFLSQL-  315 (1049)
T ss_dssp             HHSSH----HHHHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHT----TTTSHHHHHHHHHHCTTHHHHHHTTS-
T ss_pred             HhcCH----HHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHH----hhhhHHHHHHHhhccHHHHHHHHHHh-
Confidence            44563    78999999997654             2589999998532    1247999999995  99999999886 


Q ss_pred             cCHhHHHHHHH-HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458         96 KDSRLNAFLTE-AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus        96 kn~~F~~fl~~-ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      +++.|..|+++ |+..|.|++|+|.+||++|+||| +||||||++|+|++.
T Consensus       316 ~~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI-~rY~LLL~~LlK~Tp  365 (1049)
T 3ksy_A          316 SKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHC-LHYFELLKQLEEKSE  365 (1049)
T ss_dssp             SSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHH-HHHHHHHHHHHHSCC
T ss_pred             cChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHH-hHHHHHHHHHHhcCC
Confidence            89999999998 77789999999999999999999 999999999999663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1xcga1	228	a.87.1.1 (A:714-941) Rho guanine nucleotide exchan	2e-07
d1txda1	234	a.87.1.1 (A:766-999) Rho guanine nucleotide exchan	3e-07

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 36/83 (43%), Positives = 50/83 (60%)

Query: 46  CNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLT 105
             E      +   + +  FDG A E  Q+ AA FCS Q IALE ++ ++RK+SR   F+ 
Sbjct: 86  LREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQ 145

Query: 106 EAELNPLCRRLQLKDIIPTGMLR 128
           EAE +P CRRLQL+D+I + M R
Sbjct: 146 EAESHPQCRRLQLRDLIISEMQR 168

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 39/71 (54%), Positives = 49/71 (69%)

Query: 58  QMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQ 117
           +  + +F G   E  + AAATFCS Q  ALE ++ R++KDSR   F+ +AE NPLCRRLQ
Sbjct: 101 EDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQ 160

Query: 118 LKDIIPTGMLR 128
           LKDIIPT M R
Sbjct: 161 LKDIIPTQMQR 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1xcga1	228	Rho guanine nucleotide exchange factor 11, PDZ-Rho	99.85
d1txda1	234	Rho guanine nucleotide exchange factor 12 {Human (	99.84
d1f5xa_	208	RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d1ki1b1	210	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	99.78
d2dfka1	203	Rho guanine nucleotide exchange factor 9, Collybis	99.75
d1foea1	206	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	99.72
d1by1a_	209	beta-pix {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1kz7a1	195	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	99.66
d1dbha1	207	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	99.64
d1ntya1	184	Triple functional domain protein TRIO {Human (Homo	99.63

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.3e-22  Score=154.19  Aligned_cols=106  Identities=42%  Similarity=0.622  Sum_probs=99.2

Q ss_pred             hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458         40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL  109 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~  109 (159)
                      +.++++|+.|...+.          .|||+++.++++..+..+.++|..||+++..+.++++++.++++.|+.|+++|+.
T Consensus        70 ~~l~~~h~~fl~~L~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~l~~~~~  149 (228)
T d1xcga1          70 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES  149 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence            789999999987763          4899999999887778889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458        110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF  146 (159)
Q Consensus       110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~  146 (159)
                      +|.|++++|.+||+.|+||+ +||||||++|+++|.-
T Consensus       150 ~~~~~~~~l~~~l~~P~qRl-~rY~llL~~llk~t~~  185 (228)
T d1xcga1         150 HPQCRRLQLRDLIISEMQRL-TKYPLLLESIIKHTEG  185 (228)
T ss_dssp             SGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred             CcccccCCHHHHHhhHHHHH-hHHHHHHHHHHHhCCC
Confidence            99999999999999999999 9999999999998843

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=152.88  Aligned_cols=104  Identities=42%  Similarity=0.592  Sum_probs=97.3

Q ss_pred             hhhHHHHHHHHHHHh------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEA  107 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~c  107 (159)
                      ++|+++|+.|.+.++            .||++++.++.+...+.+.++|..||+++..|.++++++.++|+.|++|+++|
T Consensus        71 ~~i~~~h~~~l~~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~  150 (234)
T d1txda1          71 EDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDA  150 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCccchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            789999999987764            38999999998776778899999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458        108 ELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF  144 (159)
Q Consensus       108 e~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~  144 (159)
                      +++|.|++++|.++|++|+||| +||||||+.|++++
T Consensus       151 ~~~~~~~~~~l~~~L~~PvqRl-~kY~llL~~llk~t  186 (234)
T d1txda1         151 ESNPLCRRLQLKDIIPTQMQRL-TKYPLLLDNIAKYT  186 (234)
T ss_dssp             HHSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTC
T ss_pred             HccccccCCCHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence            9999999999999999999999 99999999999886

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.3e-20  Score=145.03  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhC
Q psy11458         40 PGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN  110 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~  110 (159)
                      ++++++|..|...++         .||++|+++.+     . +.+|..||+++..|.+.+++..++++.|+.|+++|+++
T Consensus        74 ~~i~~~h~~~l~~L~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~l~~~~~~  147 (208)
T d1f5xa_          74 EELFSVHTHFLKELKDALAGPGATTLYQVFIKYKE-----R-FLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQR  147 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCGGGHHHHHHSTHH-----H-HTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHH-----H-HHHHHHHHHcchhHHHHHHHHHHhCHHHHHHHHHHHhc
Confidence            789999999987763         48999999763     3 47999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        111 PLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       111 p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      |.|++++|.++|++|+||| +||||||+.|++++.
T Consensus       148 ~~~~~~~l~~~L~~PvqRl-~rY~lLl~~llk~T~  181 (208)
T d1f5xa_         148 ANNGRFTLRDLLMVPMQRV-LKYHLLLQELVKHTQ  181 (208)
T ss_dssp             TCTTSSTTTTTTTTHHHHH-HHHHHHHHHHHTTCC
T ss_pred             ccccCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence            9999999999999999999 999999999998873

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.3e-20  Score=141.38  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=91.5

Q ss_pred             hhhHHHHHHHHHHHh-------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE  106 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~  106 (159)
                      +.|+++|.++...++             .||++|+.+++      +.++|..||.++..|.+.+++..++++.|..|++.
T Consensus        58 ~~l~~~h~~~l~~L~~~~~~~~~~~~~~~ig~~f~~~~~------~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~  131 (210)
T d1ki1b1          58 KELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLP------HMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKR  131 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHHHGG------GGTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHH------HhhHHHHHHHcChHHHHHHHHHHhhcHHHHHHHHH
Confidence            789999999987652             48999999884      35799999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      |+.+|.|++++|.++|+.|+||| +||||||+.|+++|.
T Consensus       132 ~~~~~~~~~~~l~~~L~~PvqRl-~rY~llL~~l~k~t~  169 (210)
T d1ki1b1         132 LEMDPRCKGMPLSSFILKPMQRV-TRYPLIIKNILENTP  169 (210)
T ss_dssp             HHTSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHTTSC
T ss_pred             HhhCcccccCCHHHHHHhHHhHH-HHHHHHHHHHHHhCC
Confidence            99999999999999999999999 999999999999883

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=5.5e-19  Score=136.30  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE  108 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce  108 (159)
                      ++|+++|..|...++           .||++|+.+++     . ..+|..||+++..|...++++ .+++.|+.|+.+++
T Consensus        64 ~~l~~~h~~~l~~L~~~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~~~~~l~~~-~~~~~~~~~~~~~~  136 (203)
T d2dfka1          64 EDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQD-----G-FWIYSEYCNNHLDACMELSKL-MKDSRYQHFFEACR  136 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTTT-----G-GGHHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHH-----h-HHHHHHHHHhchhHHHHHHHH-HhChHHHHHHHHHH
Confidence            789999999987663           38999999884     3 479999999999999999976 58999999999999


Q ss_pred             hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      ..|.|++++|.++|++|+||| +||||||++|++++.
T Consensus       137 ~~~~~~~~~l~~~L~~PvqRi-~rY~llL~~llk~t~  172 (203)
T d2dfka1         137 LLQQMIDIAIDGFLLTPVQKI-CKYPLQLAELLKYTA  172 (203)
T ss_dssp             HHTTCCSCCHHHHHTHHHHHH-HHHHHHHHHHHHTSC
T ss_pred             HhhhcccCCHHHHHHhHHHHH-HHHHHHHHHHHHhCC
Confidence            999999999999999999999 999999999999984

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.6e-18  Score=133.08  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=84.3

Q ss_pred             hhhHHHHHHHHHHHh-----------------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458         40 PGYWKICNEYCEYQN-----------------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK   96 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-----------------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk   96 (159)
                      ++|+.+|.+|...++                       .||++|+.+.+     . .++|..||+++..|.+.+.+. ++
T Consensus        56 ~~l~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~~~~~~~~~-~~  128 (206)
T d1foea1          56 TEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD-----R-FKLYSAFCASHTKVPKVLVKA-KT  128 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTT-----G-GGGHHHHHHHTTTHHHHHTTT-TT
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHhccccchHhHHHHHHHHHHH-----H-HHHHHHHHhCCchHHHHHHHH-hc
Confidence            789999999986542                       48999998763     3 469999999999999999865 68


Q ss_pred             CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458         97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus        97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      ++.|..|++.+ ..+.+++++|.++|++|+||| +||||||++|+++|.
T Consensus       129 ~~~f~~f~~~~-~~~~~~~~~l~~~L~~PvqRi-~rY~llL~~l~k~t~  175 (206)
T d1foea1         129 DTAFKAFLDAQ-NPRQQHSSTLESYLIKPIQRV-LKYPLLLRELFALTD  175 (206)
T ss_dssp             CHHHHHHHHHH-CTTCCGGGSHHHHTTHHHHHH-TTHHHHHHHHHHTSC
T ss_pred             ChHHHHHHHHH-hHhccCCCCHHHHHhhHHHHH-HHHHHHHHHHHHhCC
Confidence            99999999866 456678999999999999999 999999999999984

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-18  Score=133.68  Aligned_cols=106  Identities=11%  Similarity=0.102  Sum_probs=88.3

Q ss_pred             cccchhhhcccccCChhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHH
Q psy11458         25 VSQNDIYAGNDCRWSPGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERR   94 (159)
Q Consensus        25 ~~~~di~~~n~~~~~~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~   94 (159)
                      .....||+.-     ++|+.+|..+...++          .||++|+++++     .|..+|..||+|+..|.+.+++  
T Consensus        52 ~~~~~lF~ni-----~~l~~~h~~~l~~L~~~~~~~~~~~~ig~~fl~~~~-----~~~~~Y~~Y~~~~~~~~~~l~k--  119 (209)
T d1by1a_          52 ANISYLMGNL-----EEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMP-----QMKTLYLTYCANHPSAVNVLTE--  119 (209)
T ss_dssp             SGGGTTHHHH-----HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHccH-----HHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHH--
Confidence            3344556542     789999999988764          38999999884     5777999999999999999875  


Q ss_pred             hcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458         95 RKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus        95 kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                       .++.|..|++.+ +.+.+++++|.++|++|+||| +||||||++|++++.
T Consensus       120 -~~~~~~~f~~~~-~~~~~~~~~l~~~L~~PvQRl-~rY~LLL~~Llk~t~  167 (209)
T d1by1a_         120 -HSEELGEFMETK-GASSPGILVLTTGLSKPFMRL-DKYPTLLKELERHME  167 (209)
T ss_dssp             -HTTTHHHHTTTT-CCCSSTTTHHHHHTTSTTTGG-GTHHHHHHHHHHSSC
T ss_pred             -hhHHHHHHHHHH-hhcccccCCHHHHhhhHHHHH-HHHHHHHHHHHHhCC
Confidence             477899998654 466779999999999999999 999999999999874

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=7e-17  Score=124.54  Aligned_cols=92  Identities=12%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             hhhHHHHHHH-HHHH-------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCC
Q psy11458         40 PGYWKICNEY-CEYQ-------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP  111 (159)
Q Consensus        40 ~~Li~ih~~~-~~~v-------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p  111 (159)
                      ++++.+|.++ ...+       ..||++|+.+++     .| ++|..||+++..|...+++. ++++.|..+.+..    
T Consensus        64 ~~i~~~h~~~ll~~l~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~~~~~~~~~l~~~-~~~~~~~~~~~~~----  132 (195)
T d1kz7a1          64 EEIYHFHNRIFLRELESCIDCPELVGRCFLERME-----EF-QIYEKYCQNKPRSESLWRQC-SDCPFFQECQKKL----  132 (195)
T ss_dssp             HHHHHHHHHTHHHHHHTTTTCGGGHHHHHHTTTT-----GG-GHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-----Hh-HHHHHHHhCHHHHHHHHHHH-HhChHHHHHHHhc----
Confidence            5788888774 3443       359999999884     34 69999999999999999976 6788887765533    


Q ss_pred             CCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458        112 LCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF  144 (159)
Q Consensus       112 ~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~  144 (159)
                       +++++|.++|++|+||| +||||||++|+++|
T Consensus       133 -~~~~~l~s~L~~PvqRl-~rY~LlL~~llk~T  163 (195)
T d1kz7a1         133 -DHKLSLDSYLLKPVQRI-TKYQLLLKEMLKYS  163 (195)
T ss_dssp             -TCSSCHHHHHTHHHHHH-HHHHHHHHHHHHTC
T ss_pred             -cCCCCHHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence             46899999999999999 99999999999987

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-17  Score=127.78  Aligned_cols=100  Identities=7%  Similarity=-0.116  Sum_probs=84.1

Q ss_pred             hhhHHHHHHHHHHHh-------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHH--HHHHHHHHHhcCHhHHHHH
Q psy11458         40 PGYWKICNEYCEYQN-------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQI--ALESLRERRRKDSRLNAFL  104 (159)
Q Consensus        40 ~~Li~ih~~~~~~v~-------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~--A~~~lkel~kkn~~F~~fl  104 (159)
                      ++++++|.+|...++             .|||+|+++...   .. +.+|..||+|+..  +...+.+...+++.|..|+
T Consensus        53 ~~I~~~h~~fl~~Le~~~~~~~~~~~~~~ig~~f~~~~~~---~~-f~~Y~~Y~~n~~~~~~~~~~~~~~~~~~~~~~~~  128 (207)
T d1dbha1          53 VDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEE---LA-FDPYESYARDILRPGFHDRFLSQLSKPGAALYLQ  128 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHT---TT-THHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCCccchHHHHHHHHhHH---hc-ccHHHHHHHhHhhhHHHHHHHHHHhCCHHHHHHH
Confidence            789999999987653             379999987532   12 2789999998765  4566777789999999999


Q ss_pred             HHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458        105 TEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI  145 (159)
Q Consensus       105 ~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~  145 (159)
                      +.++..|.|++++|.++|++|+||| +||||||+.| +++|
T Consensus       129 ~~~~~~~~~~~~~L~s~Li~PvQRl-~rY~LLl~~L-~~~t  167 (207)
T d1dbha1         129 SIGEGFKEAVQYVLPRLLLAPVYHC-LHYFELLKQL-EEKS  167 (207)
T ss_dssp             HHCTTHHHHHHHTHHHHTTHHHHHH-HHHHHHHHHH-HHHC
T ss_pred             HHHHcChhcccCChHHHHHHHHHHH-hHHHHHHHHH-HhcC
Confidence            9999999999999999999999999 9999999975 6666

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.5e-17  Score=124.08  Aligned_cols=91  Identities=11%  Similarity=0.144  Sum_probs=74.2

Q ss_pred             hhhHHHHHH-HHHHH-------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCC
Q psy11458         40 PGYWKICNE-YCEYQ-------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP  111 (159)
Q Consensus        40 ~~Li~ih~~-~~~~v-------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p  111 (159)
                      ++++.+|.+ +...+       ..||++|+.+.+     . .++|..||+++..|...+.+.      +..|+++|++..
T Consensus        56 ~~i~~~h~~~ll~~l~~~~~~~~~ig~~fl~~~~-----~-~~~Y~~Y~~~~~~a~~~l~~~------~~~~~~~~~~~~  123 (184)
T d1ntya1          56 QEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWAD-----K-FQMYVTYCKNKPDSTQLILEH------AGSYFDEIQQRH  123 (184)
T ss_dssp             HHHHHHHHHTHHHHHHHTTTCGGGTHHHHHHTTT-----T-THHHHHHHHHHHHHHHHHHHH------TTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH-----H-HHHHHHHHhCHHHHHHHHHHH------HhHHHHHHHHhh
Confidence            678888887 45544       469999999874     3 479999999999999999864      223556666665


Q ss_pred             CCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458        112 LCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF  144 (159)
Q Consensus       112 ~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~  144 (159)
                      .| +++|.++|++|+||| +||||||++|+++|
T Consensus       124 ~~-~~~l~~~Li~PvQRl-~rY~lLL~~llk~T  154 (184)
T d1ntya1         124 GL-ANSISSYLIKPVQRI-TKYQLLLKELLTCC  154 (184)
T ss_dssp             TC-SSCHHHHHTHHHHHH-HHHHHHHHHHHHTS
T ss_pred             cc-ccCHHHHHHhHHHHH-HHHHHHHHHHHHhC
Confidence            55 679999999999999 99999999999988