Psyllid ID: psy11482


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
MSSSPDTDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVLC
cccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHEEEEcc
mssspdtdrfktnDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFrhqsgngkdtnnkkQSEKIIKTLIKIIIKTTLLvknhqfsstelttcETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRhltsknltnldnLYYCLKVLC
mssspdtdrfktndlaMRVQKklaskmsnksMVKMYIDDRSGRLLDNLYRVIKTYVsfrhqsgngkdtnnkkqseKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRhltsknltnldnlYYCLKVLC
MSSSPDTDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEkiiktlikiiikttllVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVLC
********************************VKMYIDDRSGRLLDNLYRVIKTYVSFR****************KIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVL*
***************AMRVQKKLAS*MSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRH***************KIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVLC
**********KTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQS**********QSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVLC
*********FKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVLC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSPDTDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKVLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query172 2.2.26 [Sep-21-2011]
A4IF78198 Tumor necrosis factor alp yes N/A 0.854 0.742 0.421 1e-28
O95379198 Tumor necrosis factor alp yes N/A 0.854 0.742 0.415 5e-28
Q5RF18198 Tumor necrosis factor alp yes N/A 0.854 0.742 0.408 2e-27
Q7SZE8186 Tumor necrosis factor alp yes N/A 0.848 0.784 0.392 3e-27
Q921Z5198 Tumor necrosis factor alp yes N/A 0.854 0.742 0.402 6e-27
Q5ZI78188 Tumor necrosis factor alp yes N/A 0.854 0.781 0.402 1e-26
Q5ZJU8186 Tumor necrosis factor alp no N/A 0.848 0.784 0.392 2e-26
Q5BKH4186 Tumor necrosis factor alp yes N/A 0.848 0.784 0.386 1e-25
Q1ECV8186 Tumor necrosis factor, al no N/A 0.848 0.784 0.348 1e-25
Q28I19189 Tumor necrosis factor alp no N/A 0.854 0.777 0.387 8e-25
>sp|A4IF78|TFIP8_BOVIN Tumor necrosis factor alpha-induced protein 8 OS=Bos taurus GN=TNFAIP8 PE=2 SV=1 Back     alignment and function desciption
 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 12/159 (7%)

Query: 7   TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGK 66
           TD F + +LA++ QKK+  KM++KS+    IDD S  +LD LYRV K Y           
Sbjct: 13  TDVFNSKNLAVQAQKKILGKMASKSIATTLIDDTSSEVLDELYRVTKEY----------- 61

Query: 67  DTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVD 126
            T NKK++EKIIK LIK +IK  +L +N+QF+  EL   E  K K H L M+++SF++VD
Sbjct: 62  -TQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD 120

Query: 127 FSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLY 165
           F++D   L + L   R  L  ++QRHLT+K+   ++N++
Sbjct: 121 FTFDRNVLSKLLNECREMLHQIIQRHLTTKSHGRVNNVF 159




Acts as a negative mediator of apoptosis. Suppresses the TNF-mediated apoptosis by inhibiting caspase-8 activity but not the processing of procaspase-8, subsequently resulting in inhibition of BID cleavage and caspase-3 activation.
Bos taurus (taxid: 9913)
>sp|O95379|TFIP8_HUMAN Tumor necrosis factor alpha-induced protein 8 OS=Homo sapiens GN=TNFAIP8 PE=1 SV=1 Back     alignment and function description
>sp|Q5RF18|TFIP8_PONAB Tumor necrosis factor alpha-induced protein 8 OS=Pongo abelii GN=TNFAIP8 PE=2 SV=1 Back     alignment and function description
>sp|Q7SZE8|TP8L1_DANRE Tumor necrosis factor alpha-induced protein 8-like protein 1 OS=Danio rerio GN=tnfaip8l1 PE=2 SV=1 Back     alignment and function description
>sp|Q921Z5|TFIP8_MOUSE Tumor necrosis factor alpha-induced protein 8 OS=Mus musculus GN=Tnfaip8 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZI78|TFIP8_CHICK Tumor necrosis factor alpha-induced protein 8 OS=Gallus gallus GN=TNFAIP8 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJU8|TP8L1_CHICK Tumor necrosis factor alpha-induced protein 8-like protein 1 OS=Gallus gallus GN=TNFAIP8L1 PE=2 SV=1 Back     alignment and function description
>sp|Q5BKH4|TP8L2_XENTR Tumor necrosis factor alpha-induced protein 8-like protein 2 OS=Xenopus tropicalis GN=tnfaip8l2 PE=2 SV=1 Back     alignment and function description
>sp|Q1ECV8|TPL2A_DANRE Tumor necrosis factor, alpha-induced protein 8-like protein 2 A OS=Danio rerio GN=tnfaip8l2a PE=2 SV=1 Back     alignment and function description
>sp|Q28I19|TFIP8_XENTR Tumor necrosis factor alpha-induced protein 8 OS=Xenopus tropicalis GN=tnfaip8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
321475288187 hypothetical protein DAPPUDRAFT_308439 [ 0.854 0.786 0.433 3e-31
405971676194 Tumor necrosis factor, alpha-induced pro 0.837 0.742 0.403 2e-29
189234283188 PREDICTED: similar to tumor necrosis fac 0.837 0.765 0.429 2e-29
270002634214 hypothetical protein TcasGA2_TC004961 [T 0.837 0.672 0.429 2e-29
193713838188 PREDICTED: tumor necrosis factor alpha-i 0.854 0.781 0.421 8e-28
291387217 559 PREDICTED: tumor necrosis factor, alpha- 0.854 0.262 0.408 1e-27
443734789210 hypothetical protein CAPTEDRAFT_209202 [ 0.813 0.666 0.427 1e-27
334332657 327 PREDICTED: tumor necrosis factor alpha-i 0.889 0.467 0.424 1e-27
241698865200 tumor necrosis factor induced protein, p 0.837 0.72 0.410 2e-27
351698703198 Tumor necrosis factor, alpha-induced pro 0.854 0.742 0.421 3e-27
>gi|321475288|gb|EFX86251.1| hypothetical protein DAPPUDRAFT_308439 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 102/159 (64%), Gaps = 12/159 (7%)

Query: 7   TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGK 66
           +D F+  D+A++ QKK+ S+MS K + K+++DDR G LLDN+YR+ KTY           
Sbjct: 2   SDNFRARDIALKAQKKILSRMSTKGVAKVFVDDRMGSLLDNVYRLCKTY----------- 50

Query: 67  DTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVD 126
            T NKK+SEKI+K +IKI+ K +LL +N QF+  EL      + KFH    ++ISF+EVD
Sbjct: 51  -TQNKKESEKIVKNIIKIVTKISLLARNEQFTQEELAIASEFQNKFHKAAKTVISFFEVD 109

Query: 127 FSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLY 165
           FSYD  +L + L   R+ L  ++Q HLT K+L  +D ++
Sbjct: 110 FSYDQKFLTQLLIECRNLLKQIVQPHLTDKSLGRIDLVF 148




Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405971676|gb|EKC36499.1| Tumor necrosis factor, alpha-induced protein 8 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|189234283|ref|XP_969754.2| PREDICTED: similar to tumor necrosis factor induced protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270002634|gb|EEZ99081.1| hypothetical protein TcasGA2_TC004961 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193713838|ref|XP_001945912.1| PREDICTED: tumor necrosis factor alpha-induced protein 8-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|291387217|ref|XP_002710443.1| PREDICTED: tumor necrosis factor, alpha-induced protein 8-like [Oryctolagus cuniculus] Back     alignment and taxonomy information
>gi|443734789|gb|ELU18646.1| hypothetical protein CAPTEDRAFT_209202 [Capitella teleta] Back     alignment and taxonomy information
>gi|334332657|ref|XP_001378237.2| PREDICTED: tumor necrosis factor alpha-induced protein 8-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|241698865|ref|XP_002411876.1| tumor necrosis factor induced protein, putative [Ixodes scapularis] gi|215504807|gb|EEC14301.1| tumor necrosis factor induced protein, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|351698703|gb|EHB01622.1| Tumor necrosis factor, alpha-induced protein 8 [Heterocephalus glaber] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
UNIPROTKB|A4IF78198 TNFAIP8 "Tumor necrosis factor 0.854 0.742 0.358 1.1e-21
UNIPROTKB|Q28ZG0188 GA17951 "Tumor necrosis factor 0.837 0.765 0.352 1.9e-21
FB|FBgn0034894188 CG4091 [Drosophila melanogaste 0.837 0.765 0.352 3e-21
UNIPROTKB|O95379198 TNFAIP8 "Tumor necrosis factor 0.854 0.742 0.352 4.9e-21
UNIPROTKB|F1PAY4198 TNFAIP8 "Uncharacterized prote 0.854 0.742 0.352 6.3e-21
UNIPROTKB|F1RLC9188 TNFAIP8 "Uncharacterized prote 0.854 0.781 0.358 6.3e-21
UNIPROTKB|Q5RF18198 TNFAIP8 "Tumor necrosis factor 0.854 0.742 0.345 1.3e-20
MGI|MGI:2147191198 Tnfaip8 "tumor necrosis factor 0.854 0.742 0.352 1.7e-20
UNIPROTKB|F1NVA5188 TNFAIP8 "Tumor necrosis factor 0.854 0.781 0.339 5.7e-20
UNIPROTKB|Q5ZI78188 TNFAIP8 "Tumor necrosis factor 0.854 0.781 0.339 5.7e-20
UNIPROTKB|A4IF78 TNFAIP8 "Tumor necrosis factor alpha-induced protein 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/159 (35%), Positives = 87/159 (54%)

Query:     7 TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGK 66
             TD F + +LA++ QKK+  KM++KS+    IDD S  +LD LYRV K Y           
Sbjct:    13 TDVFNSKNLAVQAQKKILGKMASKSIATTLIDDTSSEVLDELYRVTKEY----------- 61

Query:    67 DTNNKKQSEXXXXXXXXXXXXXXXXVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVD 126
              T NKK++E                 +N+QF+  EL   E  K K H L M+++SF++VD
Sbjct:    62 -TQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD 120

Query:   127 FSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLY 165
             F++D   L + L   R  L  ++QRHLT+K+   ++N++
Sbjct:   121 FTFDRNVLSKLLNECREMLHQIIQRHLTTKSHGRVNNVF 159




GO:0005737 "cytoplasm" evidence=IEA
GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=IEA
UNIPROTKB|Q28ZG0 GA17951 "Tumor necrosis factor alpha-induced protein 8-like protein" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
FB|FBgn0034894 CG4091 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O95379 TNFAIP8 "Tumor necrosis factor alpha-induced protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAY4 TNFAIP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLC9 TNFAIP8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RF18 TNFAIP8 "Tumor necrosis factor alpha-induced protein 8" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:2147191 Tnfaip8 "tumor necrosis factor, alpha-induced protein 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVA5 TNFAIP8 "Tumor necrosis factor alpha-induced protein 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZI78 TNFAIP8 "Tumor necrosis factor alpha-induced protein 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7SZE8TP8L1_DANRENo assigned EC number0.39240.84880.7849yesN/A
Q5RF18TFIP8_PONABNo assigned EC number0.40880.85460.7424yesN/A
Q28ZG0TFP8L_DROPSNo assigned EC number0.41020.83720.7659yesN/A
A4IF78TFIP8_BOVINNo assigned EC number0.42130.85460.7424yesN/A
Q7KVH9TFP8L_DROMENo assigned EC number0.41020.83720.7659yesN/A
Q5BKH4TP8L2_XENTRNo assigned EC number0.38600.84880.7849yesN/A
O95379TFIP8_HUMANNo assigned EC number0.41500.85460.7424yesN/A
Q5ZI78TFIP8_CHICKNo assigned EC number0.40250.85460.7819yesN/A
Q921Z5TFIP8_MOUSENo assigned EC number0.40250.85460.7424yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
pfam05527186 pfam05527, DUF758, Domain of unknown function (DUF 2e-48
>gnl|CDD|114259 pfam05527, DUF758, Domain of unknown function (DUF758) Back     alignment and domain information
 Score =  155 bits (393), Expect = 2e-48
 Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 12/159 (7%)

Query: 7   TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGK 66
            + F + DLA++ QKK+ SKM++KS+  M+IDD S  +LD LYRV K Y           
Sbjct: 1   METFSSKDLALQAQKKILSKMASKSVANMFIDDTSSEILDELYRVTKEY----------- 49

Query: 67  DTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVD 126
            T NKK+++K+IK LIKI +K  +L +N+QFS  EL   E  + K H L M+ ISFYEVD
Sbjct: 50  -TGNKKEAQKVIKNLIKIAVKIGVLYRNNQFSPEELALAERFRKKLHQLAMTAISFYEVD 108

Query: 127 FSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLY 165
           F++D   L + LT  R  L  L+QRHLT K+   +++++
Sbjct: 109 FTFDRNVLSKLLTECRDLLHQLVQRHLTPKSHGRINHVF 147


Family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor. Length = 186

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 172
PF05527186 DUF758: Domain of unknown function (DUF758) ; Inte 100.0
PF13972146 TetR: Bacterial transcriptional repressor; PDB: 3R 87.33
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor Back     alignment and domain information
Probab=100.00  E-value=3.6e-74  Score=473.97  Aligned_cols=152  Identities=47%  Similarity=0.767  Sum_probs=110.7

Q ss_pred             CCcCcchhHHHHHHHHHhhhccccchhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy11482          7 TDRFKTNDLAMRVQKKLASKMSNKSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIII   86 (172)
Q Consensus         7 ~~~f~sk~lalrAQKKllskmask~~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~v   86 (172)
                      ||.|+|+|||+|||||||||||||++|++||||||++||||||+++|+||+            ||+|||||+|||||++|
T Consensus         1 ~~~F~sk~lalrAQKKilskmask~~ak~fIddtsselLD~ly~l~K~~t~------------~kkeA~ki~KniIKi~v   68 (186)
T PF05527_consen    1 MESFSSKSLALRAQKKILSKMASKSVAKMFIDDTSSELLDELYRLLKEYTG------------NKKEAEKIIKNIIKIVV   68 (186)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHHHS-------------HHHHHHHHHHHHHHHH
T ss_pred             CCCcccchHHHHHHHHHHHhhhhhhhhHHhcCchHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999            99999999999999999


Q ss_pred             HHHhhhcCCCCCHHHHHHHHHHHHHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHH
Q psy11482         87 KTTLLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYY  166 (172)
Q Consensus        87 KigvL~rn~qf~~eEl~~~~~fr~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~KS~~Ri~~vF~  166 (172)
                      |||||+||+|||+||++.+++||+|||++|||+|||||||||||++||.++|.|||++|+++|+||||||||+||||||+
T Consensus        69 Kigvl~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~eV~fTfD~~~L~~~L~ec~~~L~~lv~~HLT~KS~~Ri~~vF~  148 (186)
T PF05527_consen   69 KIGVLYRNNQFSDEELALAEKFRKKFHQLAMTAISFYEVDFTFDRNYLSKLLKECRDLLHQLVEPHLTPKSHGRIDHVFN  148 (186)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHTSTTS---HHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHH
T ss_pred             HhheeeecCCCCHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q psy11482        167 CLKV  170 (172)
Q Consensus       167 ~~~~  170 (172)
                      ||++
T Consensus       149 ~f~~  152 (186)
T PF05527_consen  149 FFSD  152 (186)
T ss_dssp             HHT-
T ss_pred             hhCC
Confidence            9985



; PDB: 3F4M_A.

>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3f4m_A161 Crystal Structure Of Tipe2 Length = 161 2e-10
>pdb|3F4M|A Chain A, Crystal Structure Of Tipe2 Length = 161 Back     alignment and structure

Iteration: 1

Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%) Query: 30 KSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEXXXXXXXXXXXXXX 89 +S+ ++ID+ S +LD LYRV K Y T+++ Q++ Sbjct: 1 RSVAHLFIDETSSEVLDELYRVSKEY------------THSRPQAQRVIKDLIKVAIKVA 48 Query: 90 XXVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLL 149 +N F +EL + K M+ +SF EVDF+++AA L LT R L L+ Sbjct: 49 VLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELV 108 Query: 150 QRHLTSKNLTNLDNLY 165 + HLT K+ + +++ Sbjct: 109 EHHLTPKSHGRIRHVF 124

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3f4m_A161 Tumor necrosis factor, alpha-induced protein 8- li 2e-37
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens} Length = 161 Back     alignment and structure
 Score =  125 bits (315), Expect = 2e-37
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 12/136 (8%)

Query: 30  KSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTT 89
           +S+  ++ID+ S  +LD LYRV K Y            T+++ Q++++IK LIK+ IK  
Sbjct: 1   RSVAHLFIDETSSEVLDELYRVSKEY------------THSRPQAQRVIKDLIKVAIKVA 48

Query: 90  LLVKNHQFSSTELTTCETLKAKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLL 149
           +L +N  F  +EL      + K     M+ +SF EVDF+++AA L   LT  R  L  L+
Sbjct: 49  VLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELV 108

Query: 150 QRHLTSKNLTNLDNLY 165
           + HLT K+   + +++
Sbjct: 109 EHHLTPKSHGRIRHVF 124


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
3f4m_A161 Tumor necrosis factor, alpha-induced protein 8- li 100.0
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.3e-63  Score=399.76  Aligned_cols=129  Identities=35%  Similarity=0.585  Sum_probs=121.3

Q ss_pred             cchhhhhcccchHHhHHHHHHHHHHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q psy11482         30 KSMVKMYIDDRSGRLLDNLYRVIKTYVSFRHQSGNGKDTNNKKQSEKIIKTLIKIIIKTTLLVKNHQFSSTELTTCETLK  109 (172)
Q Consensus        30 k~~~k~fIDDtss~lLD~LYrl~K~yt~~~~~~~~~~~~~nkkeAeKviK~lIKi~vKigvL~rn~qf~~eEl~~~~~fr  109 (172)
                      |++|++||||||+||||||||++|+||+            ||||||||+|||||++||||||+||+|||+||++.+++||
T Consensus         1 k~va~~fIDdtsselLD~lyrl~K~~t~------------nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr   68 (161)
T 3f4m_A            1 RSVAHLFIDETSSEVLDELYRVSKEYTH------------SRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFR   68 (161)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHS------------CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CchhHHhcCccHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHH
Confidence            6899999999999999999999999999            9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHhhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHhhhh
Q psy11482        110 AKFHTLLMSLISFYEVDFSYDAAYLIRQLTTLRSQLAGLLQRHLTSKNLTNLDNLYYCLKV  170 (172)
Q Consensus       110 ~K~~~~amT~iSF~eVdfTfD~~~L~~~L~ecr~lL~~lv~~HLT~KS~~Ri~~vF~~~~~  170 (172)
                      +|||++|||+|||||||||||+.||+++|.|||++|+++|+||||||||+||||||+||++
T Consensus        69 ~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~lv~~HLT~KS~~Ri~~vF~~f~~  129 (161)
T 3f4m_A           69 QKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFSD  129 (161)
T ss_dssp             HHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999986




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00