Psyllid ID: psy11494
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 197 | 2.2.26 [Sep-21-2011] | |||||||
| P42345 | 2549 | Serine/threonine-protein | yes | N/A | 0.944 | 0.072 | 0.606 | 7e-55 | |
| P42346 | 2549 | Serine/threonine-protein | yes | N/A | 0.944 | 0.072 | 0.601 | 2e-54 | |
| Q9JLN9 | 2549 | Serine/threonine-protein | yes | N/A | 0.944 | 0.072 | 0.601 | 2e-54 | |
| Q9VK45 | 2470 | Target of rapamycin OS=Dr | yes | N/A | 0.949 | 0.075 | 0.510 | 7e-51 | |
| Q86C65 | 2380 | Target of rapamycin OS=Di | yes | N/A | 0.918 | 0.076 | 0.478 | 7e-41 | |
| O14356 | 2335 | Phosphatidylinositol 3-ki | yes | N/A | 0.913 | 0.077 | 0.409 | 3e-34 | |
| Q9Y7K2 | 2337 | Phosphatidylinositol 3-ki | no | N/A | 0.908 | 0.076 | 0.371 | 6e-31 | |
| P32600 | 2474 | Serine/threonine-protein | yes | N/A | 0.964 | 0.076 | 0.348 | 2e-29 | |
| Q0DJS1 | 2465 | Serine/threonine-protein | yes | N/A | 0.908 | 0.072 | 0.372 | 4e-26 | |
| P35169 | 2470 | Serine/threonine-protein | no | N/A | 0.903 | 0.072 | 0.317 | 2e-25 |
| >sp|P42345|MTOR_HUMAN Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/188 (60%), Positives = 142/188 (75%), Gaps = 2/188 (1%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V ELRE++ EE T F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN +R R
Sbjct: 48 VTMELREMSQEESTRFYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNA-TRIGR 106
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RH
Sbjct: 107 FANYLRNLLPSNDPVVMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRH 166
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELA++VPT F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE
Sbjct: 167 AAVLVLRELAISVPTFFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQRE-P 225
Query: 190 KQSQKPQW 197
K+ QKPQW
Sbjct: 226 KEMQKPQW 233
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-758', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-422'. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|P42346|MTOR_RAT Serine/threonine-protein kinase mTOR OS=Rattus norvegicus GN=Mtor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V ELRE++ EE T F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN ++R R
Sbjct: 48 VTMELREMSQEESTRFYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGN-STRIGR 106
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPS+D VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RH
Sbjct: 107 FANYLRNLLPSSDPVVMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRH 166
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELA++VPT F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE
Sbjct: 167 AAVLVLRELAISVPTFFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQRE-P 225
Query: 190 KQSQKPQW 197
K+ QKPQW
Sbjct: 226 KEMQKPQW 233
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-757', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-421'. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9JLN9|MTOR_MOUSE Serine/threonine-protein kinase mTOR OS=Mus musculus GN=Mtor PE=1 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V ELRE++ EE T F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN ++R R
Sbjct: 48 VTMELREMSQEESTRFYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGN-STRIGR 106
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPS+D VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RH
Sbjct: 107 FANYLRNLLPSSDPVVMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRH 166
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELA++VPT F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE
Sbjct: 167 AAVLVLRELAISVPTFFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQRE-P 225
Query: 190 KQSQKPQW 197
K+ QKPQW
Sbjct: 226 KEMQKPQW 233
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-757', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-422'. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9VK45|TOR_DROME Target of rapamycin OS=Drosophila melanogaster GN=Tor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN-- 67
V+TELRE++ EE+ F D F+HHIF MV+A D+NEKK G +A+ CL++ + G++ +R
Sbjct: 33 VKTELREMSQEELAQFFDEFDHHIFTMVNATDINEKKGGALAMKCLINCE-GSLTARKGI 91
Query: 68 IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGK 127
+ N LR+LL ND+ VM AA+++ KLA + + A+ DF++KKA E L G+R E +
Sbjct: 92 SPYLNRLRDLLLINDVSVMEIAARSLVKLANMPTSKGADSFDFDIKKAFEVLRGERQEYR 151
Query: 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRE 187
RH+AV +L+ELA+ +PT FYQH+ FF+ +F+A+ DPKP IR A +A+RAAL+VTAQRE
Sbjct: 152 RHSAVFILRELAIALPTYFYQHILTFFEVIFNAIFDPKPAIRESAGEALRAALIVTAQRE 211
Query: 188 SAKQSQKPQW 197
S KQS +PQW
Sbjct: 212 STKQSSEPQW 221
|
Promotes cell and tissue growth, maintains tissue homeostatis and controls responses to environmental stress and aging. Regulates growth during animal development by coupling growth factor signaling to nutrient availability. Central regulators of autophagy. May be involved in atg1 phosphorylation. May also be involved, directly or indirectly, in the control of neuronal function. Phosphorylates S6K/p70S6K, in vitro. May regulate the activity of S6K. Overexpression inhibits growth and reduces cell size. Affects the timing of neuronal cell differentiation. Hyperactivation of the signaling leads to accelerated differentiation, whereas inhibition of the signaling retards differentiation. Thus, in addition to controlling growth of the cell in which it resides, it can also influence growth of distant cells and organs during development via a humoral mechanism. In short, during development, it primarily controls growth, whereas in the adult, where there is relatively little growth, it controls aging and other aspects of nutrient-related physiology. Rag GTPases act as activators of TORC1 in response to amino acid signals. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|Q86C65|TOR_DICDI Target of rapamycin OS=Dictyostelium discoideum GN=tor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 125/182 (68%), Gaps = 1/182 (0%)
Query: 8 SMVRTELREVTVEEVTAFTDAFNHH-IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSR 66
S V ++ RE+T E T F + N++ IFE+V+++ + EK GI+AI L+ VD ++
Sbjct: 38 SYVISQSREMTNENFTKFMNELNNNLIFELVNSSVIPEKIGGIMAIDELIDVDYDENATK 97
Query: 67 NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEG 126
R ANYLR L ND VM A+K +G+LA+ SGT +AE+ +FE+ +A+EWL GDR+E
Sbjct: 98 ITRLANYLRIGLGFNDFTVMLMASKALGRLARSSGTLTAEFVEFEVTRALEWLSGDRIEA 157
Query: 127 KRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186
+RHAAVLVLKELA PT+FY H +F D ++ A++DPK IR AV+A+RA L + ++R
Sbjct: 158 RRHAAVLVLKELAQNAPTLFYVHASSFVDLIWVALKDPKVAIREGAVEALRACLELISER 217
Query: 187 ES 188
ES
Sbjct: 218 ES 219
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Regulates cell growth, chemotaxis, signal relay and the actin cytoskeleton. Functions as a part of 2 distinct protein complexes TORC1 and TORC2. TORC1 is a rapamycin-sensitive complex that controls cell growth in response to nutrients and growth factors. The second TOR complex, TORC2, is presumed to be indirectly negatively modulated by rapamycin and regulates actin polarization. TORC2 but not TORC1 negatively regulates phagocytosis. TORC2-dependent regulation of the cytoskeleton may follow differential phosphorylation of pkbA. May have some protein kinase activity, as it appears to phosphorylate pkgB. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tor1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHV----DVGNVNS 65
V + +E++ E + F + N IFE++ ++D +E+ GI+AI L+ DV N++
Sbjct: 26 VHSSTKELSGESLARFNNDINRRIFELIHSHDSHERFGGILAIGKLIEFESEGDVTNLS- 84
Query: 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVE 125
R+ANYLR LPS D M +AK +G LA GT +AE+ +FE+++A EWL GDR E
Sbjct: 85 ---RYANYLRMTLPSTDWHSMELSAKVLGHLAASGGTLAAEFVEFEVQRAFEWLQGDRQE 141
Query: 126 GKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185
KR AA+L++K LA PT+ Y ++ F +++ +RDPKP IR A A+ A+L V Q
Sbjct: 142 QKRMAAILIIKALAQNSPTLVYLYISEIFQNLWTGLRDPKPLIRETAADALGASLDVVCQ 201
Query: 186 RESAKQSQ 193
RE+ Q Q
Sbjct: 202 REAKVQLQ 209
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Phosphatidylinositol 3-kinase homolog required for G1 progression and entry into stationary phase. Also required for the onset of meiosis and sporulation under nitrogen and carbon starvation conditions. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 7 |
| >sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tor2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 112/183 (61%), Gaps = 4/183 (2%)
Query: 15 REVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYL 74
RE++ E + F + N +++ ++ + D ++ +G+ AI L+ + G +R RFANYL
Sbjct: 31 RELSGEALVQFNNDVNKYVYTLIHSTDPLDRLAGVTAINRLIDYE-GEDTTRITRFANYL 89
Query: 75 RNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLV 134
R +LP D AAK +G+LA G ++E+ +FE+K+A+EWL G+R E +R+AAVL+
Sbjct: 90 RIILPGTDQKATVLAAKALGRLAVPGGALTSEFVNFEVKRALEWLQGERNENRRYAAVLI 149
Query: 135 LKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQK 194
LKELA T+ Y H+ + F+ ++ +RDPK IR+ + A+ L + QR+S S +
Sbjct: 150 LKELAKNTSTLIYAHIDSIFELLWHGLRDPKVTIRIASADALSEFLKIVRQRDS---SIR 206
Query: 195 PQW 197
QW
Sbjct: 207 LQW 209
|
Phosphatidylinositol 3-kinase homolog required for G1 progression. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 7 |
| >sp|P32600|TOR2_YEAST Serine/threonine-protein kinase TOR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOR2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 118/204 (57%), Gaps = 14/204 (6%)
Query: 4 ATGASMVRTEL----REVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLL--H 57
A+GA+ + T L REV+ E+ F+++ N+ IFE++ +EK GI+A+ L+ +
Sbjct: 102 ASGANELSTTLTSLAREVSAEQFQRFSNSLNNKIFELIHGFTSSEKIGGILAVDTLISFY 161
Query: 58 VDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117
+ + ++ R ANYLR L+PS+DI VMR AA T+G+L GT ++++ +FE++ I+
Sbjct: 162 LSTEELPNQTSRLANYLRVLIPSSDIEVMRLAANTLGRLTVPGGTLTSDFVEFEVRTCID 221
Query: 118 WL--------GGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIR 169
WL ++E +RHAA+L++K LA P + Y +V + D ++ +RD K IR
Sbjct: 222 WLTLTADNNSSSSKLEYRRHAALLIIKALADNSPYLLYPYVNSILDNIWVPLRDAKLIIR 281
Query: 170 LHAVKAIRAALVVTAQRESAKQSQ 193
L A A+ L + R+ A Q
Sbjct: 282 LDAAVALGKCLTIIQDRDPALGKQ 305
|
Phosphatidylinositol 3-kinase homolog, component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. TORC1 controls many of these processes via TIP41-TAP42-mediated inhibition of the type 2A-related phosphatases PP2A and SIT4. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway by activating the RHO1 guanine nucleotide exchange factor ROM2. TORC2 phosphorylates the AGC kinase YPK2, an upstream effector of the cell integrity pathway. TORC2 negatively regulates calcineurin-dependent stress signaling via phosphorylation of its effector SLM1-SLM2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q0DJS1|TOR_ORYSJ Serine/threonine-protein kinase TOR OS=Oryza sativa subsp. japonica GN=TOR PE=2 SV=3 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 104/180 (57%), Gaps = 1/180 (0%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V E R+++ E F + I ++ +NDV E + AI L+ + G S+ +
Sbjct: 45 VEEEARDLSGEAFLRFMEQLYEQICSLLQSNDVAENLLALRAIDALIDMPFGEGASKVSK 104
Query: 70 FANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKR 128
FAN+LR + D V+ A+ +G LA+ G +A+ + ++K A+ WLGGDRVE +R
Sbjct: 105 FANFLRTVFEVKRDPEVLVPASAVLGHLAKAGGAMTADEVERQIKTALGWLGGDRVEYRR 164
Query: 129 HAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188
A+VL+LKE+A T+F HV F D ++ A+RDPK +R AV+A+RA L V +RE+
Sbjct: 165 FASVLILKEMAENASTVFNVHVPEFVDAIWVALRDPKQAVRERAVEALRACLHVIEKRET 224
|
Essential cell growth regulator that controls plant development. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P35169|TOR1_YEAST Serine/threonine-protein kinase TOR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 11/189 (5%)
Query: 16 EVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLL--HVDVGNVNSRNIRFANY 73
E+++EE A ++ N+ I E+V + + +++I L+ + + + R A Y
Sbjct: 106 ELSIEEFQAVSNDINNKILELVHTKKTSTRVGAVLSIDTLISFYAYTERLPNETSRLAGY 165
Query: 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWL---------GGDRV 124
LR L+PSND+ VMR AAKT+GKLA GT+++++ +FE+K +EWL +
Sbjct: 166 LRGLIPSNDVEVMRLAAKTLGKLAVPGGTYTSDFVEFEIKSCLEWLTASTEKNSFSSSKP 225
Query: 125 EGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184
+ +HAA+L++ LA P + YQ++ + D ++ A+RDP IR+ A + L
Sbjct: 226 DHAKHAALLIITALAENCPYLLYQYLNSILDNIWRALRDPHLVIRIDASITLAKCLSTLR 285
Query: 185 QRESAKQSQ 193
R+ SQ
Sbjct: 286 NRDPQLTSQ 294
|
Phosphatidylinositol 3-kinase homolog, component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. TORC1 controls many of these processes via TIP41-TAP42-mediated inhibition of the type 2A-related phosphatases PP2A and SIT4. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 197 | ||||||
| 380015740 | 2441 | PREDICTED: serine/threonine-protein kina | 0.954 | 0.077 | 0.728 | 2e-78 | |
| 328787083 | 2451 | PREDICTED: serine/threonine-protein kina | 0.954 | 0.076 | 0.728 | 2e-78 | |
| 340721244 | 2436 | PREDICTED: serine/threonine-protein kina | 0.954 | 0.077 | 0.723 | 5e-78 | |
| 350406817 | 2442 | PREDICTED: serine/threonine-protein kina | 0.954 | 0.076 | 0.723 | 5e-78 | |
| 345489192 | 2464 | PREDICTED: serine/threonine-protein kina | 0.954 | 0.076 | 0.723 | 5e-78 | |
| 383847340 | 2441 | PREDICTED: serine/threonine-protein kina | 0.954 | 0.077 | 0.718 | 6e-78 | |
| 387308765 | 2507 | target of rapamycin [Nilaparvata lugens] | 0.954 | 0.074 | 0.718 | 2e-76 | |
| 307169138 | 2449 | FKBP12-rapamycin complex-associated prot | 0.954 | 0.076 | 0.691 | 6e-75 | |
| 322798654 | 2402 | hypothetical protein SINV_13723 [Solenop | 0.954 | 0.078 | 0.680 | 3e-74 | |
| 197131003 | 2470 | target of rapamycin [Blattella germanica | 0.954 | 0.076 | 0.744 | 5e-74 |
| >gi|380015740|ref|XP_003691854.1| PREDICTED: serine/threonine-protein kinase mTOR [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/188 (72%), Positives = 163/188 (86%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELREV+ EE+TAF D FNHHIFEMVS +DVNEKK GI+AIVCL+ DVGN+N+R IR
Sbjct: 32 VKTELREVSQEEITAFMDEFNHHIFEMVSGSDVNEKKGGILAIVCLIGADVGNINTRTIR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND+GVM AAKTVGKLA +SGT++AEY +FE+K+A EWLGGDR EGKRH
Sbjct: 92 FANYLRNLLPSNDVGVMELAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGGDRHEGKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV++PT F+Q V FF+ +F+A+RDPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSMPTYFFQQVTPFFELIFNAIRDPKPVIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787083|ref|XP_625130.2| PREDICTED: serine/threonine-protein kinase mTOR isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/188 (72%), Positives = 163/188 (86%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELREV+ EE+TAF D FNHHIFEMVS +DVNEKK GI+AIVCL+ DVGN+N+R IR
Sbjct: 32 VKTELREVSQEEITAFMDEFNHHIFEMVSGSDVNEKKGGILAIVCLIGADVGNINTRTIR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND+GVM AAKTVGKLA +SGT++AEY +FE+K+A EWLGGDR EGKRH
Sbjct: 92 FANYLRNLLPSNDVGVMELAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGGDRHEGKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV++PT F+Q V FF+ +F+A+RDPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSMPTYFFQQVTPFFELIFNAIRDPKPVIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340721244|ref|XP_003399034.1| PREDICTED: serine/threonine-protein kinase mTOR-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 162/188 (86%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELRE + EE+TAF D FNHHIFEMVS +DVNEKK GI+AIVCL+ DVGN+N+R IR
Sbjct: 32 VKTELREASQEEITAFMDEFNHHIFEMVSGSDVNEKKGGILAIVCLIGADVGNINTRTIR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND+GVM AAKTVGKLA +SGT++AEY +FE+K+A EWLGGDR EGKRH
Sbjct: 92 FANYLRNLLPSNDVGVMELAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGGDRHEGKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV++PT F+Q V FF+ +F+A+RDPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSMPTYFFQQVTPFFELIFNAIRDPKPVIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350406817|ref|XP_003487895.1| PREDICTED: serine/threonine-protein kinase mTOR-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 162/188 (86%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELRE + EE+TAF D FNHHIFEMVS +DVNEKK GI+AIVCL+ DVGN+N+R IR
Sbjct: 32 VKTELREASQEEITAFMDEFNHHIFEMVSGSDVNEKKGGILAIVCLIGADVGNINTRTIR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND+GVM AAKTVGKLA +SGT++AEY +FE+K+A EWLGGDR EGKRH
Sbjct: 92 FANYLRNLLPSNDVGVMELAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGGDRHEGKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV++PT F+Q V FF+ +F+A+RDPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSMPTYFFQQVTPFFELIFNAIRDPKPVIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345489192|ref|XP_001602345.2| PREDICTED: serine/threonine-protein kinase mTOR [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 161/188 (85%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELRE T EE+TAF D FNHHIFEMVS +D+NEKK GI+AIVCL+ DVGN+N+R IR
Sbjct: 32 VKTELREATQEEITAFMDEFNHHIFEMVSGSDINEKKGGILAIVCLIGADVGNINTRTIR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPS+DIGVM AAKTVGKLA +SGTF+AEY +FE+K+A EWL GDR E KRH
Sbjct: 92 FANYLRNLLPSSDIGVMELAAKTVGKLALVSGTFTAEYVEFEVKRAFEWLSGDRNENKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVLKELAV++PT F+QH+ FF+ +F AV DPKP IR AV+A+RAALV+TAQRE+A
Sbjct: 152 AAVLVLKELAVSMPTYFFQHITQFFELIFKAVCDPKPAIREGAVEALRAALVLTAQRETA 211
Query: 190 KQSQKPQW 197
KQ+QKP W
Sbjct: 212 KQTQKPTW 219
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383847340|ref|XP_003699312.1| PREDICTED: serine/threonine-protein kinase mTOR [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 135/188 (71%), Positives = 162/188 (86%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELRE + EE+TAF D FNHHIFEMVS +DVNEKK GI+AI+CL+ DVGN+N+R IR
Sbjct: 32 VKTELREASQEEITAFMDEFNHHIFEMVSGSDVNEKKGGILAIICLIGADVGNINTRTIR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND+GVM AAKTVGKLA +SGT++AEY +FE+K+A EWLGGDR EGKRH
Sbjct: 92 FANYLRNLLPSNDVGVMELAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGGDRHEGKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV++PT F+Q V FF+ +F+A+RDPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSMPTYFFQQVTPFFELIFNAIRDPKPVIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|387308765|gb|AFJ74724.1| target of rapamycin [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/188 (71%), Positives = 161/188 (85%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELREV+ EE+TAF D FNHHIFEMVS +DVNEKK GI+AIVCL+ DVGN+N+R R
Sbjct: 32 VKTELREVSAEELTAFMDEFNHHIFEMVSGSDVNEKKGGIVAIVCLIVADVGNINNRISR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPSND GVM AA TVGKLA +SGT+SAEY +FE+K+A EWLGGDR EG RH
Sbjct: 92 FANYLRNLLPSNDQGVMELAANTVGKLALVSGTYSAEYVEFEVKRAFEWLGGDRHEGGRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELA++VPT F+Q VQ FF+ +F+A+ DPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELALSVPTYFFQQVQTFFELIFNAIHDPKPFIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
+Q+QKP W
Sbjct: 212 RQTQKPTW 219
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169138|gb|EFN61954.1| FKBP12-rapamycin complex-associated protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 160/188 (85%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+ ELRE + EE+TAF D FNHHIFEMVSA+D+NEKK GI+AIVCL+ DVGN N+R +R
Sbjct: 32 VKRELREASQEEITAFMDEFNHHIFEMVSASDINEKKGGILAIVCLIGADVGNFNTRTVR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNL+PSND+GVM+ AAKTVGKLA +SGT++AEY +FE+K+A EWLG DR +G+RH
Sbjct: 92 FANYLRNLIPSNDVGVMQLAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGADRHDGRRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV+VPT F+Q V FF+ +F+A+ DPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSVPTYFFQQVTPFFELIFNAIHDPKPAIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322798654|gb|EFZ20258.1| hypothetical protein SINV_13723 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/188 (68%), Positives = 159/188 (84%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+ ELRE + EE+TAF D FNHHIFEMVSA+D+NEKK GI+AIVCL+ DVGN N+R +R
Sbjct: 32 VKRELREASQEEITAFMDEFNHHIFEMVSASDINEKKGGILAIVCLIGADVGNFNTRTVR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNL+PSND+GVM+ AAKTVGKLA +SGT++AEY +FE+K+A EWLG DR EG++H
Sbjct: 92 FANYLRNLIPSNDVGVMQLAAKTVGKLALVSGTYTAEYVEFEVKRAFEWLGADRHEGRKH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV+VPT F+Q V FF+ +F+A+ DPKP +R AV+A+RAALVVTAQRE+
Sbjct: 152 AAVLVLRELAVSVPTYFFQQVTPFFELIFNAIHDPKPAVREGAVEALRAALVVTAQRETV 211
Query: 190 KQSQKPQW 197
KQ K QW
Sbjct: 212 KQMHKSQW 219
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|197131003|gb|ACH47049.1| target of rapamycin [Blattella germanica] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 140/188 (74%), Positives = 165/188 (87%)
Query: 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR 69
V+TELREV+VEE+T+F D FNHHIFEMVS +DVNEK GI+AIVCL+ DVGN+N+R R
Sbjct: 32 VKTELREVSVEELTSFMDEFNHHIFEMVSGSDVNEKNGGILAIVCLIGADVGNINTRISR 91
Query: 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRH 129
FANYLRNLLPS+D GVM AAKTVGKLA +SGT++AEY +FE+K+A EWLGGDR EGKRH
Sbjct: 92 FANYLRNLLPSSDTGVMELAAKTVGKLALVSGTYAAEYVEFEVKRAFEWLGGDRHEGKRH 151
Query: 130 AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESA 189
AAVLVL+ELAV++PT F+Q VQ FFD VF+AVRDPKP IR AV+A+RAALVVTAQRE+A
Sbjct: 152 AAVLVLRELAVSMPTYFFQQVQQFFDLVFNAVRDPKPVIREGAVEALRAALVVTAQRETA 211
Query: 190 KQSQKPQW 197
KQ+QKPQW
Sbjct: 212 KQTQKPQW 219
|
Source: Blattella germanica Species: Blattella germanica Genus: Blattella Family: Ectobiidae Order: Blattodea Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 197 | ||||||
| UNIPROTKB|E2R2L2 | 2550 | MTOR "Uncharacterized protein" | 0.868 | 0.067 | 0.618 | 6.4e-50 | |
| UNIPROTKB|F1RHR8 | 2551 | MTOR "Uncharacterized protein" | 0.868 | 0.067 | 0.618 | 6.4e-50 | |
| UNIPROTKB|P42345 | 2549 | MTOR "Serine/threonine-protein | 0.868 | 0.067 | 0.612 | 8.2e-50 | |
| UNIPROTKB|E1BFB4 | 2551 | MTOR "Uncharacterized protein" | 0.868 | 0.067 | 0.612 | 8.2e-50 | |
| MGI|MGI:1928394 | 2549 | Mtor "mechanistic target of ra | 0.868 | 0.067 | 0.606 | 2.2e-49 | |
| RGD|68371 | 2549 | Mtor "mechanistic target of ra | 0.868 | 0.067 | 0.606 | 2.2e-49 | |
| ZFIN|ZDB-GENE-030131-2974 | 2563 | mtor "mechanistic target of ra | 0.868 | 0.066 | 0.612 | 4.6e-49 | |
| UNIPROTKB|F1NUX4 | 2455 | MTOR "Uncharacterized protein" | 0.766 | 0.061 | 0.607 | 5.7e-42 | |
| FB|FBgn0021796 | 2470 | Tor "Target of rapamycin" [Dro | 0.873 | 0.069 | 0.514 | 5.2e-41 | |
| DICTYBASE|DDB_G0281569 | 2380 | tor "FRAP family protein kinas | 0.832 | 0.068 | 0.487 | 8.4e-34 |
| UNIPROTKB|E2R2L2 MTOR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 6.4e-50, P = 6.4e-50
Identities = 107/173 (61%), Positives = 132/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN +R RFANYLRNLLPSND
Sbjct: 63 FYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNA-TRIGRFANYLRNLLPSNDPV 121
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELAV+VPT
Sbjct: 122 VMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAVSVPT 181
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 182 FFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREP-KEMQKPQW 233
|
|
| UNIPROTKB|F1RHR8 MTOR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 6.4e-50, P = 6.4e-50
Identities = 107/173 (61%), Positives = 132/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN +R RFANYLRNLLPSND
Sbjct: 63 FYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNA-TRIGRFANYLRNLLPSNDPV 121
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELAV+VPT
Sbjct: 122 VMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAVSVPT 181
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 182 FFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREP-KEMQKPQW 233
|
|
| UNIPROTKB|P42345 MTOR "Serine/threonine-protein kinase mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 8.2e-50, P = 8.2e-50
Identities = 106/173 (61%), Positives = 132/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN +R RFANYLRNLLPSND
Sbjct: 63 FYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNA-TRIGRFANYLRNLLPSNDPV 121
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELA++VPT
Sbjct: 122 VMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPT 181
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 182 FFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREP-KEMQKPQW 233
|
|
| UNIPROTKB|E1BFB4 MTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 8.2e-50, P = 8.2e-50
Identities = 106/173 (61%), Positives = 132/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN +R RFANYLRNLLPSND
Sbjct: 63 FYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGNA-TRIGRFANYLRNLLPSNDPV 121
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELA++VPT
Sbjct: 122 VMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPT 181
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 182 FFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREP-KEMQKPQW 233
|
|
| MGI|MGI:1928394 Mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 2.2e-49, P = 2.2e-49
Identities = 105/173 (60%), Positives = 133/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN ++R RFANYLRNLLPS+D
Sbjct: 63 FYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGN-STRIGRFANYLRNLLPSSDPV 121
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELA++VPT
Sbjct: 122 VMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPT 181
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 182 FFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREP-KEMQKPQW 233
|
|
| RGD|68371 Mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 2.2e-49, P = 2.2e-49
Identities = 105/173 (60%), Positives = 133/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++D NE+K GI+AI L+ V+ GN ++R RFANYLRNLLPS+D
Sbjct: 63 FYDQLNHHIFELVSSSDANERKGGILAIASLIGVEGGN-STRIGRFANYLRNLLPSSDPV 121
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G+LA TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELA++VPT
Sbjct: 122 VMEMASKAIGRLAMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPT 181
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV DPK IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 182 FFFQQVQPFFDNIFVAVWDPKQAIREGAVAALRACLILTTQREP-KEMQKPQW 233
|
|
| ZFIN|ZDB-GENE-030131-2974 mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 4.6e-49, P = 4.6e-49
Identities = 106/173 (61%), Positives = 132/173 (76%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84
F D NHHIFE+VS++DVNEKK GI+AIV L+ V+ GN +R RFANYLRNLLPS+D
Sbjct: 49 FYDELNHHIFELVSSSDVNEKKGGILAIVSLIGVEGGNA-TRISRFANYLRNLLPSSDSV 107
Query: 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144
VM A+K +G L+ TF+AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELAV+ PT
Sbjct: 108 VMEMASKAMGHLSMAGDTFTAEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAVSAPT 167
Query: 145 IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
F+Q VQ FFD +F AV D K IR AV A+RA L++T QRE+ K+ QKPQW
Sbjct: 168 FFFQQVQPFFDNIFYAVWDSKQAIREGAVSALRACLILTTQRET-KEMQKPQW 219
|
|
| UNIPROTKB|F1NUX4 MTOR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 5.7e-42, P = 5.7e-42
Identities = 93/153 (60%), Positives = 116/153 (75%)
Query: 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104
+K GI+AI L+ V+ GN +R RFANYLRNLLPSND VM A+K +G+LA TF+
Sbjct: 1 RKGGILAIASLIGVEGGNA-TRIGRFANYLRNLLPSNDPVVMEMASKAIGRLAMAGDTFT 59
Query: 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP 164
AEY +FE+K+A+EWLG DR EG+RHAAVLVL+ELA++VPT F+Q VQ FFD +F AV DP
Sbjct: 60 AEYVEFEVKRALEWLGADRNEGRRHAAVLVLRELAISVPTFFFQQVQPFFDNIFVAVWDP 119
Query: 165 KPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
K IR AV A+RA L++T QRE K+ QKPQW
Sbjct: 120 KQAIREGAVSALRACLILTTQREP-KEMQKPQW 151
|
|
| FB|FBgn0021796 Tor "Target of rapamycin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 5.2e-41, P = 5.2e-41
Identities = 90/175 (51%), Positives = 128/175 (73%)
Query: 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN-IR-FANYLRNLLPSND 82
F D F+HHIF MV+A D+NEKK G +A+ CL++ + G++ +R I + N LR+LL ND
Sbjct: 48 FFDEFDHHIFTMVNATDINEKKGGALAMKCLINCE-GSLTARKGISPYLNRLRDLLLIND 106
Query: 83 IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV 142
+ VM AA+++ KLA + + A+ DF++KKA E L G+R E +RH+AV +L+ELA+ +
Sbjct: 107 VSVMEIAARSLVKLANMPTSKGADSFDFDIKKAFEVLRGERQEYRRHSAVFILRELAIAL 166
Query: 143 PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197
PT FYQH+ FF+ +F+A+ DPKP IR A +A+RAAL+VTAQRES KQS +PQW
Sbjct: 167 PTYFYQHILTFFEVIFNAIFDPKPAIRESAGEALRAALIVTAQRESTKQSSEPQW 221
|
|
| DICTYBASE|DDB_G0281569 tor "FRAP family protein kinase Tor" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 8.4e-34, P = 8.4e-34
Identities = 80/164 (48%), Positives = 114/164 (69%)
Query: 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYA 89
N+ IFE+V+++ + EK GI+AI L+ VD ++ R ANYLR L ND VM A
Sbjct: 61 NNLIFELVNSSVIPEKIGGIMAIDELIDVDYDENATKITRLANYLRIGLGFNDFTVMLMA 120
Query: 90 AKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH 149
+K +G+LA+ SGT +AE+ +FE+ +A+EWL GDR+E +RHAAVLVLKELA PT+FY H
Sbjct: 121 SKALGRLARSSGTLTAEFVEFEVTRALEWLSGDRIEARRHAAVLVLKELAQNAPTLFYVH 180
Query: 150 VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRESAKQSQ 193
+F D ++ A++DPK IR AV+A+RA L + ++RES + Q
Sbjct: 181 ASSFVDLIWVALKDPKVAIREGAVEALRACLELISERESRLRLQ 224
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9JLN9 | MTOR_MOUSE | 2, ., 7, ., 1, 1, ., 1 | 0.6010 | 0.9441 | 0.0729 | yes | N/A |
| Q9VK45 | TOR_DROME | 2, ., 7, ., 1, ., - | 0.5105 | 0.9492 | 0.0757 | yes | N/A |
| P42346 | MTOR_RAT | 2, ., 7, ., 1, 1, ., 1 | 0.6010 | 0.9441 | 0.0729 | yes | N/A |
| P42345 | MTOR_HUMAN | 2, ., 7, ., 1, 1, ., 1 | 0.6063 | 0.9441 | 0.0729 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
No hit with e-value below 0.005
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 197 | |||
| KOG0891|consensus | 2341 | 99.96 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.07 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.66 | |
| KOG2171|consensus | 1075 | 97.62 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.47 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.31 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.18 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.12 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.92 | |
| PF08713 | 213 | DNA_alkylation: DNA alkylation repair enzyme; Inte | 96.84 | |
| KOG1967|consensus | 1030 | 96.82 | ||
| PRK09687 | 280 | putative lyase; Provisional | 96.8 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.63 | |
| KOG2171|consensus | 1075 | 96.44 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.39 | |
| KOG1242|consensus | 569 | 96.39 | ||
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 96.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.95 | |
| KOG0212|consensus | 675 | 95.94 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.92 | |
| KOG0212|consensus | 675 | 95.89 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 95.83 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.54 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.03 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 95.02 | |
| cd06561 | 197 | AlkD_like A new structural DNA glycosylase. This d | 94.84 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 94.74 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 94.72 | |
| KOG4653|consensus | 982 | 94.54 | ||
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 94.25 | |
| KOG1943|consensus | 1133 | 94.09 | ||
| KOG1820|consensus | 815 | 94.0 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 93.89 | |
| KOG0915|consensus | 1702 | 93.72 | ||
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 93.63 | |
| KOG0392|consensus | 1549 | 93.49 | ||
| KOG1242|consensus | 569 | 93.43 | ||
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 92.97 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 92.87 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 92.78 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 92.64 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 92.61 | |
| KOG0166|consensus | 514 | 92.29 | ||
| KOG1248|consensus | 1176 | 92.02 | ||
| KOG1851|consensus | 1710 | 91.7 | ||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 91.66 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 91.6 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 91.33 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 91.18 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 90.89 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 89.61 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 89.49 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 89.16 | |
| KOG0213|consensus | 1172 | 88.93 | ||
| KOG1241|consensus | 859 | 88.7 | ||
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 88.54 | |
| KOG0414|consensus | 1251 | 88.17 | ||
| PF11919 | 90 | DUF3437: Domain of unknown function (DUF3437); Int | 88.06 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 87.66 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 87.51 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 87.42 | |
| KOG1241|consensus | 859 | 87.35 | ||
| KOG1943|consensus | 1133 | 86.4 | ||
| KOG0915|consensus | 1702 | 86.14 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 85.88 | |
| KOG1824|consensus | 1233 | 85.3 | ||
| KOG1820|consensus | 815 | 84.7 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 83.88 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 83.81 | |
| KOG0213|consensus | 1172 | 83.75 | ||
| KOG2023|consensus | 885 | 82.63 | ||
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 81.31 | |
| KOG2160|consensus | 342 | 81.13 | ||
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 80.81 | |
| KOG2956|consensus | 516 | 80.7 | ||
| KOG0392|consensus | 1549 | 80.57 | ||
| cd03562 | 114 | CID CID (CTD-Interacting Domain) domain family; CI | 80.17 |
| >KOG0891|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=258.39 Aligned_cols=189 Identities=51% Similarity=0.763 Sum_probs=179.4
Q ss_pred hHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCCh
Q psy11494 5 TGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDI 83 (197)
Q Consensus 5 ~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~ 83 (197)
.+.+||.+++||++.+.+.+|.+.+|++||+|.+..++|+++|||.+++.++.+.+ ....+..+|++|||+.++|++|.
T Consensus 28 e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~s~~~n~l~~l~~~~~~ 107 (2341)
T KOG0891|consen 28 ELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTEHDRKNISRLANYLRYLLPSNDV 107 (2341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcccccchhHhHHHHHHHhhccCCh
Confidence 46789999999999999999999999999999999999999999999999998873 22566689999999999999999
Q ss_pred hHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC
Q psy11494 84 GVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD 163 (197)
Q Consensus 84 ~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD 163 (197)
.+|..|++++|+++.+|++.++|+|++++|+++||+ +++.+.+|++|++++++++.++|+++|++++.|+++||.+++|
T Consensus 108 ~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~ 186 (2341)
T KOG0891|consen 108 EVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRD 186 (2341)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhcchhhhhcCCCC
Q psy11494 164 PKPEIRLHAVKAIRAALVVTAQRESAKQSQKPQW 197 (197)
Q Consensus 164 pk~~iRe~Aa~aL~~cL~ii~~Re~~~~~~~~~~ 197 (197)
|++.||..|+.|+++|+..+.+|+ + ..+++|
T Consensus 187 ~~~~i~~~a~~al~~~~~~~~~~~-~--~~~~~~ 217 (2341)
T KOG0891|consen 187 PKPAIRLQACSALHAVLSSLAQRE-A--KLKPQW 217 (2341)
T ss_pred CChhhhHHHHHHHHHHHhhhhhcc-c--hhhhHH
Confidence 999999999999999999999999 3 466666
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-05 Score=57.93 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
....++++.-++..+..+..+.... ||+|+--|..+++.++..+.+|++++|+.+|..+.||.+.||.+| +.|..+|
T Consensus 19 ~~~~~~l~~Il~pVL~~~~D~d~rV-Ry~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 19 KDISKYLDEILPPVLKCFDDQDSRV-RYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3378899999999999987655555 999999999999999999999999999999999999999999988 4444443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.02 Score=50.93 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=129.2
Q ss_pred hhhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH-hhcC-CCcchhhhHHHHHHHhhhCC
Q psy11494 2 RIATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCL-LHVD-VGNVNSRNIRFANYLRNLLP 79 (197)
Q Consensus 2 ~~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~L-i~~~-~~~~~~~~~rf~~yL~~~l~ 79 (197)
|.+.+..|+....+....+.......++.+.+...++++...|+.-+..++..| +.++ +.+....+..+...|++++.
T Consensus 60 Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~ 139 (309)
T PF05004_consen 60 REAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILT 139 (309)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999999999999999877778888776666666 4554 33456667778889999987
Q ss_pred CC--ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh--hh----cCCCc---------chhhHHHHHHHHHHHhhC
Q psy11494 80 SN--DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE--WL----GGDRV---------EGKRHAAVLVLKELAVTV 142 (197)
Q Consensus 80 ~~--D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale--wL----~~~r~---------e~rR~AAvLvLrELa~na 142 (197)
.+ .+.+-..++.+||-++-.||.-..++.+ .=.+++ |. .+++. ..=.-||+.---=|+...
T Consensus 140 d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~--~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~ 217 (309)
T PF05004_consen 140 DSSASPKARAACLEALAICTFVGGSDEEETEE--LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL 217 (309)
T ss_pred CCccchHHHHHHHHHHHHHHHhhcCChhHHHH--HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC
Confidence 43 3344345667999998887764443331 114555 54 23332 122333332222244455
Q ss_pred Cc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy11494 143 PT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRE 187 (197)
Q Consensus 143 Pt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re 187 (197)
|. -+..++...++.+=..|-.+...||-+|.+++.-++++....+
T Consensus 218 ~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~ 263 (309)
T PF05004_consen 218 PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHE 263 (309)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 65 3556677788888889999999999999999999988887543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=64.57 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=120.8
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHH
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVM 86 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm 86 (197)
..-+...+..++++. ..--+...+-.++.|++-.+|.+|++||..+-+--..--...+.+.-+.+-+.|..+++.|=
T Consensus 330 ~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred HHHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 345566677777764 12234567788999999999999999998887542212222344555555555666788999
Q ss_pred HHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhc--CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHH-HHhhhcC
Q psy11494 87 RYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLG--GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDF-VFSAVRD 163 (197)
Q Consensus 87 ~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~--~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~-Iw~aLrD 163 (197)
-.|..++|+++..=+.....+-...+-.++-.+- ....+..-|||+-++-=...+.++.+-||++.+++. .-..+-.
T Consensus 407 ~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999886444444455555555554442 234467788888888777888899999999999995 5555555
Q ss_pred CcHHHHHHHHHHHHHH
Q psy11494 164 PKPEIRLHAVKAIRAA 179 (197)
Q Consensus 164 pk~~iRe~Aa~aL~~c 179 (197)
+++.|+|.++.|+..+
T Consensus 487 ~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASV 502 (1075)
T ss_pred CchhHHHHHHHHHHHH
Confidence 6999999999988754
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.015 Score=48.24 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=86.7
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
..|...+++.-..=-..++..+..|...-+..-...+..+...|-..+..+-..+-..|..++-.++...+ +..+++
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~-- 132 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKIL-- 132 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHH--
Confidence 44444443322222345566666665443222222233333333344444455677888889999888643 223332
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC---chhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP---TIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP---t~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
...+.-...+++..-|..++..|..+....| ..+-.. ++.+.+.|=..+.||++.||+.|-.++....+..-.
T Consensus 133 --~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 133 --LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred --HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 2333334467778888888888888888877 333332 588999999999999999999999999998888777
Q ss_pred cc
Q psy11494 186 RE 187 (197)
Q Consensus 186 Re 187 (197)
|-
T Consensus 211 ~a 212 (228)
T PF12348_consen 211 RA 212 (228)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00037 Score=45.74 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 127 KRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 127 rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
-|.+|+..|-+++...|..+-++++.+++.+-..|.|++..||..|+.||.
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999986
|
... |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0022 Score=46.64 Aligned_cols=110 Identities=20% Similarity=0.105 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH-HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI-RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~-rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
+-+.+.++++.++..-+.+++.++..+...........+. .+...|..+|..+|..+...|.++++.|+..+......+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4456778888888888999999999887542111111121 345556666677899999999999999998765544555
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELA 139 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa 139 (197)
++.. ++..++-|+.+ ...-|-.|+.+|..|+
T Consensus 88 ~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 5543 55556666554 4444556666766654
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=47.49 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=94.2
Q ss_pred hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHh-------hhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 38 SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLR-------NLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 38 ~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~-------~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
.+.|=.++.-|+.-+..++... ........|..+|+ ..+.+.-..|++.|..+++.++...|.-...+++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5677788899999999998655 11222344555555 44555678899999999999999877777777777
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH-HHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF-FDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~-~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
-+..-++-+.. .+..-|-+|.-.|..+..++| +.+.+ +..+..+..++++.+|..++..+..++.-..
T Consensus 95 ~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGD-SKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 77766666654 455678889999999999988 22344 7778889999999999999999999988777
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=53.73 Aligned_cols=138 Identities=19% Similarity=0.215 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
.....+..++.|+|..+|.=|-+++..+...+.+ ...=..|-+++=+.++|+.+.-.|=++++.+.. .+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~ 111 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEM 111 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cch
Confidence 3456688888999999999999999888765522 355578888888999999999999999999873 344
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++.-++.-..-|.. +...=|-+|++-+..+.+..|..+-.. +++.+-..|.|+.+.|+.+|..++..|
T Consensus 112 ~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 112 AEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 44434444444444 444555566777778888889877554 678888888999999999999988877
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.039 Score=45.22 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=106.5
Q ss_pred hhhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-
Q psy11494 2 RIATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS- 80 (197)
Q Consensus 2 ~~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~- 80 (197)
|...++.......++.+.+ ++......+|.+++.-.+++-|+..++...... + .....++...++.
T Consensus 31 ~~p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~--~-----~~~~~~~~~~~~~~ 97 (213)
T PF08713_consen 31 RTPDLRKLAKDIYKELKLS------EELYELADELWESGYREERYLALLILDKRRKKL--T-----EEDLELLEKWLPDI 97 (213)
T ss_dssp -HHHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCC
T ss_pred CcHHHHHHHHHHHhhcccc------hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh--h-----HHHHHHHHHHhccC
Confidence 3445566666666665555 455566778888888888998888886655332 1 1255666777774
Q ss_pred CChhHHHHH-HHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHh
Q psy11494 81 NDIGVMRYA-AKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 81 ~D~~vm~~A-A~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~ 159 (197)
++-.++... ++++|++.... +.-.....+|+.++....||.|-++.++- ... ...+.+++.+-.
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~-~~~------~~~~~~l~~~~~ 162 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRY-IRK------EDFDELLEIIEA 162 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTH-GGG------CHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHh------cCHHHHHHHHHH
Confidence 566666665 88888886532 23345678999999999999998887653 333 777899999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHH
Q psy11494 160 AVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 160 aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+.|+...||.+.+-+|+.+.
T Consensus 163 ~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 163 LLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp CTTGS-HHHHHHHHHHHHHHC
T ss_pred HcCCchHHHHHHHHHHHHHHH
Confidence 999999999999988888654
|
The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A. |
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.021 Score=57.21 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhh-cCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC
Q psy11494 23 TAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLH-VDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 23 ~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~-~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG 101 (197)
+||+.++...+.+.+++.+..+|--=+.|+--.|. +...-....+..+-..|-.+|...|..|-.-+-.++--+..-.+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 67888898888888885555555555666655553 22111222355566666677778899997778899988888899
Q ss_pred cchhhhHHHHHHHHHhhhcCCC--cchhhHHHHHHHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDR--VEGKRHAAVLVLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r--~e~rR~AAvLvLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+++.+.+..-|.--+.-=.... .-.-|..|.--|--|.+..|+ ..++|.++++..|=..|-|||-.||+.|+.+=..
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 9999999998887665444333 256799999999999998777 9999999999999999999999999999987555
Q ss_pred HHHH
Q psy11494 179 ALVV 182 (197)
Q Consensus 179 cL~i 182 (197)
-..+
T Consensus 1022 W~~l 1025 (1030)
T KOG1967|consen 1022 WYML 1025 (1030)
T ss_pred hhhc
Confidence 4433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.037 Score=48.50 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhh-CCCCChhHHHHHHHHHHHhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNL-LPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~-l~~~D~~vm~~AA~~lG~L~~ 98 (197)
+...+..+++++|...|..|+.++..|-+-+.. ..+....|..+ +...|..|-..|+.+||++..
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 456677788888888888888888776432110 22444555555 567888899999999999864
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.014 Score=42.37 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=78.7
Q ss_pred HHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH-HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh
Q psy11494 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD-FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV 150 (197)
Q Consensus 72 ~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve-~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v 150 (197)
..|..++...|..+...|..+++.++...-.....+++ .-++..++.|.. ....-+..|+..|..|+.+.|......+
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 34445556667899999999999999864344455665 335555566655 3556667899999999999876444444
Q ss_pred -hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 151 -QAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 151 -~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+++.+-..+.+++..+|+.|..+|...
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34788888889999999999999988754
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.069 Score=54.52 Aligned_cols=138 Identities=19% Similarity=0.169 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 20 EEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
.+|-.|++++...+..++.++.+++|-=|+-.+|.+++.-+....+...+|..++-..++.+|++|-..||-=+|-++..
T Consensus 836 ~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~ 915 (1075)
T KOG2171|consen 836 GSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQF 915 (1075)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45778888899999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred cCcchhhhHHHHHHHHHhhhcC--CCcchhhHH---HHHHHHHHHhhCCchhHhhhhHHHHHHHh
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGG--DRVEGKRHA---AVLVLKELAVTVPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~--~r~e~rR~A---AvLvLrELa~naPt~~~~~v~~~~d~Iw~ 159 (197)
||.--++++......-...++. .|.|.++.| |+-=+--+..+.|+-+- +++++...+.
T Consensus 916 ~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~ 978 (1075)
T KOG2171|consen 916 GGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLS 978 (1075)
T ss_pred cCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHH
Confidence 9988667777666666666663 233444444 23334445566666544 6666665433
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=48.34 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=99.7
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
+-||+.+++++..+-.=....|+.+++-...+ .....+..+|...|...++.|-..|.+.+|+++.+......-+++.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~--~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPD--SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 33888888776544444445577777654333 2377889999999999999999999999999998865544445555
Q ss_pred HHHHHH-hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 111 EMKKAI-EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 111 ev~~Al-ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++=..+ ..|+. ....=--+|+-+|+.|+.+.+-.=.-+-+.....+...+..++..+|-...+++-..
T Consensus 119 ~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 119 ELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred cHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 543333 44444 444445567788899998765431111233378888888888989998776665443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=49.33 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=108.6
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-CChhH
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-NDIGV 85 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-~D~~v 85 (197)
++-|.+..+.+..-.-..-.+++-..+++++++.+..|+.|+..++--+..--+.+.-. -..|-.-|...+.. +...-
T Consensus 113 q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~-~~~~l~~l~~ai~dk~~~~~ 191 (569)
T KOG1242|consen 113 QRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLK-EFGFLDNLSKAIIDKKSALN 191 (569)
T ss_pred HHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhh-hhhHHHHHHHHhcccchhhc
Confidence 34445555555544444445556677899999999999999999998877443222111 12233333333322 11111
Q ss_pred HHHHHHHHHHhhhccCcc--------------------------------------hhhhHHHHHHHHHhhhcCCCcchh
Q psy11494 86 MRYAAKTVGKLAQISGTF--------------------------------------SAEYADFEMKKAIEWLGGDRVEGK 127 (197)
Q Consensus 86 m~~AA~~lG~L~~~gG~~--------------------------------------~~~~Ve~ev~~AlewL~~~r~e~r 127 (197)
++.++-++-.....-|.. .+.=|..-+...+.-+... .+.-
T Consensus 192 re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrt 270 (569)
T KOG1242|consen 192 REAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRT 270 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhh
Confidence 111111111111111111 0111111122222222222 5678
Q ss_pred hHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy11494 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRE 187 (197)
Q Consensus 128 R~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re 187 (197)
+.|++-+|.-|+..+|...-.+++.+...+=..++|.++.||+++.+++...-.++..-|
T Consensus 271 K~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 999999999999999999999999999999999999999999999999998877776544
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.26 Score=39.82 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCC-ChhHHHHHHHHHHHhhhcc
Q psy11494 23 TAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSN-DIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 23 ~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~-D~~vm~~AA~~lG~L~~~g 100 (197)
..-.+.+..+|..+++|++...|..|+.-+..+++..+-+ -.+....+.+.|-.+|..+ +..+.+.|-.++.++....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3455667778999999999999999999999999775333 2234445555555666654 5677888889999998764
Q ss_pred Ccc---hhhhHH----HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHH
Q psy11494 101 GTF---SAEYAD----FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVF 158 (197)
Q Consensus 101 G~~---~~~~Ve----~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw 158 (197)
+.+ +-|++. .-++-++.-++. ..-.-.++-.|..+-.+-||.|-+|.+++-..+-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 433 334333 233444444443 4455678889999999999999999888766553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.2 Score=43.94 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHHH-HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 23 TAFTDAFN-HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 23 ~~~~~~l~-~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
...+++.+ +.+++++..+|...+..++.++.. .+..+ -...+..++.+.|+.+=..|+++||+|-.++
T Consensus 17 ~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~---~~~~~-------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 17 YSQCKKLNDDELFRLLDDHNSLKRISSIRVLQL---RGGQD-------VFRLAIELCSSKNPIERDIGADILSQLGMAK 85 (280)
T ss_pred HHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHh---cCcch-------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 33444443 458888899999889888777643 33222 2233455667889999999999999997643
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.11 Score=50.05 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHh-hcCCCcchhhhHHHHHH-HhhhCCCCC-----hhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHH
Q psy11494 44 EKKSGIIAIVCLL-HVDVGNVNSRNIRFANY-LRNLLPSND-----IGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAI 116 (197)
Q Consensus 44 eklggI~aId~Li-~~~~~~~~~~~~rf~~y-L~~~l~~~D-----~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Al 116 (197)
.|+++++-|.+++ ++-..+...++.++-+- .+....+.+ -.+|-.||-++|- |+-.+.|++.-+.+.+
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaL-----g~~~~~Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIAL-----GIKDAGYLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHh-----ccccHHHHHHhhHHHH
Confidence 3667777777776 33222334456666663 333333332 3456666665542 2333348888888877
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcch
Q psy11494 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188 (197)
Q Consensus 117 ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~ 188 (197)
-.+.. ....-||-||--|..+|+-+-+-+..|.+.+||..|....|+...||.+|-..=+-.=.|+.++++
T Consensus 91 ~cf~D-~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 91 NCFSD-QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HhccC-ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 77654 444568899999999999999999999999999999999999999999988777777777777764
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.36 Score=45.56 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcch-hhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVN-SRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~-~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
..++-..+...+++++..=|.-++.+|..+++-..+... -.-..+...+-.++...|.+|.+.|++++.+++.+...+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 333444566666777777677777777777644321100 011235667778889999999999999999999864332
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+++......+.-+-...++.-|+-..-++-+++..+|..+-... ..+++.+-..|.+...+++..+.+.|...
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 2344555445554444444555667777788899999998885554 35999999999999999999999988754
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.29 Score=47.25 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=103.8
Q ss_pred HHHhhhhCHHHHHHHHHHHH-HHHHHHhhCCchhHHHHHHHHHHHH-hhcCCCcchhhhHHHHHHHhhhCCCCChhHHHH
Q psy11494 11 RTELREVTVEEVTAFTDAFN-HHIFEMVSANDVNEKKSGIIAIVCL-LHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRY 88 (197)
Q Consensus 11 ~~~~re~s~e~~~~~~~~l~-~~I~~L~~s~d~~eklggI~aId~L-i~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~ 88 (197)
+...+++-.++-...++.+- ...-+...|++.+-++||++|+.+- |..+..+ ...+.+..--+-.|+...|.++--.
T Consensus 25 Ek~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~-~~Y~~~iv~Pv~~cf~D~d~~vRyy 103 (675)
T KOG0212|consen 25 EKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD-AGYLEKIVPPVLNCFSDQDSQVRYY 103 (675)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc-HHHHHHhhHHHHHhccCccceeeeH
Confidence 33344444443333333332 2456777899999999999999776 4454333 2222233333333344468888888
Q ss_pred HHHHHHHhhhcc-Ccc------------------------hhhhHHHHHHHHH-------------hhhcC---CCcchh
Q psy11494 89 AAKTVGKLAQIS-GTF------------------------SAEYADFEMKKAI-------------EWLGG---DRVEGK 127 (197)
Q Consensus 89 AA~~lG~L~~~g-G~~------------------------~~~~Ve~ev~~Al-------------ewL~~---~r~e~r 127 (197)
|.+.+=.+++.. |.. +++..+..+|-.. --|.+ ..+..-
T Consensus 104 ACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~t 183 (675)
T KOG0212|consen 104 ACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMT 183 (675)
T ss_pred hHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchH
Confidence 888876666531 111 2223322222211 00100 112334
Q ss_pred hHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhc
Q psy11494 128 RHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQR 186 (197)
Q Consensus 128 R~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~R 186 (197)
|.+=+-=|+-|---.|--|..|++.|+|.+++.|-|+...||.-+-.++...|.=|...
T Consensus 184 R~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 184 RQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444444555899999999999999999999999999999999988877643
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.05 Score=40.59 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 126 GKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 126 ~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
|-|++|+.-|...|..-|..+.+|++.+++-+...+.|+...||..|.++|-...++..
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999998776653
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.031 Score=32.76 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=24.2
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 153 ~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
++..+...+.||...||.+|+.+|....+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999987654
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.18 Score=35.10 Aligned_cols=83 Identities=27% Similarity=0.258 Sum_probs=59.3
Q ss_pred HhhhC-CCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhH
Q psy11494 74 LRNLL-PSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQA 152 (197)
Q Consensus 74 L~~~l-~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~ 152 (197)
|...+ ...|..+-..|++++|++-.+ +. +..-++.+ .+....-|.+|+..|.++. -+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~~------~~----~~~L~~~l-~d~~~~vr~~a~~aL~~i~----------~~~ 62 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGDP------EA----IPALIELL-KDEDPMVRRAAARALGRIG----------DPE 62 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTHH------HH----HHHHHHHH-TSSSHHHHHHHHHHHHCCH----------HHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCH------hH----HHHHHHHH-cCCCHHHHHHHHHHHHHhC----------CHH
Confidence 34444 678999999999999966432 22 23333444 5677788999999988773 366
Q ss_pred HHHHHHhhhcCC-cHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDP-KPEIRLHAVKAIR 177 (197)
Q Consensus 153 ~~d~Iw~aLrDp-k~~iRe~Aa~aL~ 177 (197)
.++.++..+.|+ +..||..|+.+|.
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 788888888885 5677999999884
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.64 Score=46.31 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+..+++++|...|+=+-+.+..+.+.. +....--.|.|.+=+.++|+.+--.|-+++|.+-.+ -..+++...
T Consensus 72 dVvk~~~S~d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~---~i~e~l~~~ 144 (746)
T PTZ00429 72 DVVKLAPSTDLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS---SVLEYTLEP 144 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH---HHHHHHHHH
Confidence 3444555666555554444443333222 222333456666666777888888899999887654 256667677
Q ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
|++++. ....-.||-||..++| +-...|.++.. ..+.+.+-..|.|+++.|.-.|..+|..+-
T Consensus 145 lkk~L~---D~~pYVRKtAalai~K-ly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 145 LRRAVA---DPDPYVRKTAAMGLGK-LFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHH-HHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 777773 4456678888888777 66778876532 234445555689999999999999888773
|
|
| >cd06561 AlkD_like A new structural DNA glycosylase | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.7 Score=35.00 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCC
Q psy11494 3 IATGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSND 82 (197)
Q Consensus 3 ~~~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D 82 (197)
...++.......++.+ .++......++.+.+ ++..+++|++.+-.. .........|-.+++ .-++
T Consensus 21 ~p~lr~iak~~~k~~~-------~~~~~~l~~~l~~e~---~~~~~~lal~~~~~~--~~~~~~~~~~~~~i~---~~~~ 85 (197)
T cd06561 21 TPDLRKIAKEFKKEDK-------LEEDHELAEALWHEE---IREAQYLALDLLDKK--ELKEEDLERFEPWIE---YIDN 85 (197)
T ss_pred HHHHHHHHHHHHHhcC-------HHHHHHHHHHHHccH---HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHc---CCch
Confidence 3445555555555444 223444444555544 588888888888753 122334666777776 3345
Q ss_pred hhHHH-HHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhh
Q psy11494 83 IGVMR-YAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAV 161 (197)
Q Consensus 83 ~~vm~-~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aL 161 (197)
-.++. .++.++|++...- .++ +...+|..++....||.|-+..++-..+ -.++..+++.+=..+
T Consensus 86 W~~~D~~~~~~~~~~~~~~----~~~-----~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 150 (197)
T cd06561 86 WDLVDSLCANLLGKLLYAE----PEL-----DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLL 150 (197)
T ss_pred HHHHHHHHHHHHHHHHhcC----cch-----HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhC
Confidence 55554 4667777765421 111 6788999998888899888877665544 346788888888888
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q psy11494 162 RDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 162 rDpk~~iRe~Aa~aL~~cL~i 182 (197)
.|+...|+.+.+-+|+.|..-
T Consensus 151 ~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 151 HDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999987765
|
This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.6 Score=40.29 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=89.5
Q ss_pred hhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHH
Q psy11494 37 VSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAI 116 (197)
Q Consensus 37 ~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Al 116 (197)
+++++..-+--++.+ |-.+. ++.....+...+.+++.++++.|=+.|+-++.++.+.......+.+ ++...
T Consensus 88 l~~~n~~~~~lAL~~---l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~ 158 (526)
T PF01602_consen 88 LNSPNPYIRGLALRT---LSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLK 158 (526)
T ss_dssp HCSSSHHHHHHHHHH---HHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHH
T ss_pred hcCCCHHHHHHHHhh---hhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHh
Confidence 445554444444444 44333 2334667888888999999999999999999999987444433312 23333
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 117 EWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 117 ewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.-| .+....=+.+|+.++.++ +..|..+-..++.++..+-..+.+|.+-++......|.
T Consensus 159 ~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 159 QLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLR 217 (526)
T ss_dssp HHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred hhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 333 556677788999999999 65666555777888888888889999988887777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.37 Score=39.05 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhh
Q psy11494 82 DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAV 161 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aL 161 (197)
|+.+--.+-.++|-|+.. -..+||.-++.-...|..+.... |..|+.+|..|..+-..-+- +++|..+-..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~V-R~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLV-RKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 456667788899999975 34677777788888888765555 55789999999988554444 44566677788
Q ss_pred cCCcHHHHHHHHHHHHHHHH
Q psy11494 162 RDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 162 rDpk~~iRe~Aa~aL~~cL~ 181 (197)
.|+++.||..|..++...+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLK 92 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998876543
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.88 Score=45.86 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=103.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHH-HHhhh-CCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFAN-YLRNL-LPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~-yL~~~-l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+.+-..++++--|+.=-+.+|.++.+|-++...+ .+..+.. |...- -+..|. ..+..+++|+++..-|-+...
T Consensus 769 vl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~---il~dL~e~Y~s~k~k~~~d~--~lkVGEai~k~~qa~Gel~~~ 843 (982)
T KOG4653|consen 769 VLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED---ILPDLSEEYLSEKKKLQTDY--RLKVGEAILKVAQALGELVFK 843 (982)
T ss_pred HHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh---hHHHHHHHHHhcccCCCccc--eehHHHHHHHHHHHhccHHHH
Confidence 4444556666667666778888888888874222 2333333 22211 122233 344569999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVR-DPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLr-Dpk~~iRe~Aa~aL~~cL~ 181 (197)
|.+--+..++...++ ..+.-|.+++-.|.+|+...-..+-..+.+++-+|-...+ |-++.+|.+|+..++.||.
T Consensus 844 y~~~Li~tfl~gvre-pd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 844 YKAVLINTFLSGVRE-PDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 999888888888884 4555699999999999988665555566666666544433 8899999999999999987
|
|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.08 Score=33.54 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=32.5
Q ss_pred HHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 135 LKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 135 LrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
|-++...-|+++... .+++.|=..+.|+++.||++|.+++
T Consensus 3 l~~iv~~dp~ll~~~--~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSS--DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchH--HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 445666777776654 8889999999999999999998864
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.4 Score=43.71 Aligned_cols=162 Identities=16% Similarity=0.095 Sum_probs=113.8
Q ss_pred hCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 17 VTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 17 ~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
-.+|+.......+-.++++.++..|+.=+--+.-++..++.-..-+.. ..-..+-+...-|..|...---|.-++++|
T Consensus 330 ~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La--d~vi~svid~~~p~e~~~aWHgacLaLAEL 407 (1133)
T KOG1943|consen 330 DEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA--DQVIGSVIDLFNPAEDDSAWHGACLALAEL 407 (1133)
T ss_pred ccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHH
Confidence 344556677777888888888888886676777777766643322211 123445555555777778778899999999
Q ss_pred hhccCcchhhhHH--HHHHHHHhhhc----CCCcchhhHHHHHHHHHHHhh-CCchhHhhhhHHHHH-HHhhhcCCcHHH
Q psy11494 97 AQISGTFSAEYAD--FEMKKAIEWLG----GDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDF-VFSAVRDPKPEI 168 (197)
Q Consensus 97 ~~~gG~~~~~~Ve--~ev~~AlewL~----~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~-Iw~aLrDpk~~i 168 (197)
|+-|=-+.+-+.+ --|-.|+-+=. -....+=|=||+-+.-.+++. .|+.+-+++.+++.+ +=+|+.||...+
T Consensus 408 A~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 408 ALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred HhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 9876443332221 22224443321 123467789999999999998 899999999988887 778999999999
Q ss_pred HHHHHHHHHHHH
Q psy11494 169 RLHAVKAIRAAL 180 (197)
Q Consensus 169 Re~Aa~aL~~cL 180 (197)
|.+|+.||..-.
T Consensus 488 RRAAsAAlqE~V 499 (1133)
T KOG1943|consen 488 RRAASAALQENV 499 (1133)
T ss_pred hHHHHHHHHHHh
Confidence 999999998543
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.4 Score=44.43 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=117.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
-..+..-+.|++=.+++-|+..+...+.-.. .-......-+.-+++..+-..+..|...||.+++.++.--+..-..|+
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 3445566678888999999999988886554 224455566777777777778999999999999999998777778888
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 109 DFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 109 e~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
......-|+-+.. +.-.-|-+.+=.+...+. -.++..+++.|-.+++++++.+|......|..|+..+.
T Consensus 335 ~~v~p~lld~lke-kk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 335 KNVFPSLLDRLKE-KKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HhhcchHHHHhhh-ccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 8888888888865 455557777777777666 44577889999999999999999999999999998765
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=93.89 E-value=5.1 Score=36.72 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=76.3
Q ss_pred hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc-Ccch------------hhhHHHHHHHHHhhhcCCCcchhhHHHHH
Q psy11494 67 NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS-GTFS------------AEYADFEMKKAIEWLGGDRVEGKRHAAVL 133 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g-G~~~------------~~~Ve~ev~~AlewL~~~r~e~rR~AAvL 133 (197)
...+.+.|-.++.+ .++...||+.+|-|+... ..+. ..|+..-+..-++-..+...+ .|..-..
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ 345 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLT 345 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHH
Confidence 33445545555444 778899999999999872 2221 223333344444444433322 4555566
Q ss_pred HHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 134 VLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 134 vLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
-|--+.++.|. ++.++++.++.-+-.+|.-|+..++.++.++|...+.
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 66668889998 7778899999999999999999999999988876553
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.7 Score=46.33 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=108.0
Q ss_pred HHHHhh-CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-------CChhHHHHHHHHHHHhhhccCcch
Q psy11494 33 IFEMVS-ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-------NDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 33 I~~L~~-s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-------~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.++|-+ +..=|-|+|+.-+..++..-. --+...||+.++|- +|..|-..-+..||-|..-+...+
T Consensus 961 FM~LAnh~A~wnSk~GaAfGf~~i~~~a-------~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 961 FMQLANHNATWNSKKGAAFGFGAIAKQA-------GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV 1033 (1702)
T ss_pred HHHHhhhhchhhcccchhhchHHHHHHH-------HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH
Confidence 445553 344477999999998887443 22567788888773 588888888899998887765666
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
.+|.-.=++.-+.-| +++-+-=|-|+||-|..|.+.-|+ -+..+++.+.+.+|...=|-|.-||++|-.+.+..-+++
T Consensus 1034 d~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666544333333333 335555699999999999999998 678889999999999999999999999999888766654
Q ss_pred h
Q psy11494 184 A 184 (197)
Q Consensus 184 ~ 184 (197)
.
T Consensus 1113 v 1113 (1702)
T KOG0915|consen 1113 V 1113 (1702)
T ss_pred h
Confidence 3
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=93.63 E-value=3.2 Score=37.68 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=92.4
Q ss_pred hhhhHHHHHHHhhhCCC-------CChhHHHHHHHHHHHhhhc---cCcchhhhHHHHHHHHHhhhcCCCc---------
Q psy11494 64 NSRNIRFANYLRNLLPS-------NDIGVMRYAAKTVGKLAQI---SGTFSAEYADFEMKKAIEWLGGDRV--------- 124 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l~~-------~D~~vm~~AA~~lG~L~~~---gG~~~~~~Ve~ev~~AlewL~~~r~--------- 124 (197)
..++..|.+++++=+.+ -|.+++..|=+++|-+..+ ...++.|+..+.+++|++-|..+..
T Consensus 34 ~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l 113 (372)
T PF12231_consen 34 QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYL 113 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566777777665544 3889999999999999865 4468899999999999998853321
Q ss_pred ----------------chhhH------------------HHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHH
Q psy11494 125 ----------------EGKRH------------------AAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRL 170 (197)
Q Consensus 125 ----------------e~rR~------------------AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe 170 (197)
...|+ =+..+++-|..++|..+-.+++..++.+...+-+....||.
T Consensus 114 ~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~ 193 (372)
T PF12231_consen 114 WCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRT 193 (372)
T ss_pred HHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 11222 23367788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11494 171 HAVKAIRAALVVT 183 (197)
Q Consensus 171 ~Aa~aL~~cL~ii 183 (197)
.|...+..+...+
T Consensus 194 ~a~~l~~~~~~~l 206 (372)
T PF12231_consen 194 KAISLLLEAKKCL 206 (372)
T ss_pred HHHHHHHHHHHHh
Confidence 8777666554333
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.6 Score=45.71 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=92.5
Q ss_pred HHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhH
Q psy11494 73 YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQA 152 (197)
Q Consensus 73 yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~ 152 (197)
-+..++++.++.+--.||+++|-+...+ +.|..-.-++..+-|+..-..-+||.+|..++.=|..---+...+|.+-
T Consensus 820 ~l~~~~~s~~~a~r~~~ar~i~~~~k~~---~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~L 896 (1549)
T KOG0392|consen 820 RLFFFVRSIHIAVRYAAARCIGTMFKSA---TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPL 896 (1549)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccccee
Confidence 3455677889999999999999999865 5666666678888899888889999999999998988888899999999
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 153 ~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+..-+...+.|....||++|..+++....+
T Consensus 897 lv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 897 LVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999876544
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.1 Score=41.44 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=112.7
Q ss_pred HhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChh-HHHHHHH
Q psy11494 13 ELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG-VMRYAAK 91 (197)
Q Consensus 13 ~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~-vm~~AA~ 91 (197)
..-+..+++..-++-++-..+.+.+.-+++.-|..|+.+|..+-++- +++ -+.+|.+-|-.++. |+. -...+.+
T Consensus 280 ~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi--dN~-dI~~~ip~Lld~l~--dp~~~~~e~~~ 354 (569)
T KOG1242|consen 280 AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI--DNP-DIQKIIPTLLDALA--DPSCYTPECLD 354 (569)
T ss_pred HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh--ccH-HHHHHHHHHHHHhc--CcccchHHHHH
Confidence 44567778889999999999999999999999999999999987663 222 28888888877764 333 3344555
Q ss_pred HHHHhhhccCcchh-------hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC--CchhHhhhhHHHHHHHhhhc
Q psy11494 92 TVGKLAQISGTFSA-------EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV--PTIFYQHVQAFFDFVFSAVR 162 (197)
Q Consensus 92 ~lG~L~~~gG~~~~-------~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na--Pt~~~~~v~~~~d~Iw~aLr 162 (197)
.+|.. ++.+ +++---++|++ .+|.-.-+=.++-+.--++.-. |-.+-+|+++++..+=..+-
T Consensus 355 ~L~~t-----tFV~~V~~psLalmvpiL~R~l----~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 355 SLGAT-----TFVAEVDAPSLALMVPILKRGL----AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred hhcce-----eeeeeecchhHHHHHHHHHHHH----hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc
Confidence 55532 2222 23333344443 2343333334555566677766 88999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHh
Q psy11494 163 DPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 163 Dpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
||-+.+|+-|+.||...++=+.
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999976655433
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.4 Score=41.80 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=87.4
Q ss_pred HHHHHHhhCCch----hHHHHHHHHHHHHhhcCCCcc----hhhhHHHHHHHh----hhCCCCChhHHHHHHHHHHHhhh
Q psy11494 31 HHIFEMVSANDV----NEKKSGIIAIVCLLHVDVGNV----NSRNIRFANYLR----NLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 31 ~~I~~L~~s~d~----~eklggI~aId~Li~~~~~~~----~~~~~rf~~yL~----~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
+.+++|++++.. .=+.+++++..+|+.-...+. ......|..||. ......|..-+..+=++||.+..
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 558888876533 224578999999985322221 112234555544 44455788888899999998887
Q ss_pred ccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 99 ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 99 ~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.. .+..+. -++ =..+-...-|.+|+.-|+-++...|..+.+.+-++|.+ .+-...||-+|..+|-.
T Consensus 476 ~~~---i~~l~~----~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n-----~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 476 PSS---IKVLEP----YLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN-----RAEPPEVRMAAVLVLME 542 (574)
T ss_pred hhH---HHHHHH----hcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC-----CCCChHHHHHHHHHHHh
Confidence 632 122221 111 01223456899999999999999998777666555522 23467799999988877
Q ss_pred H
Q psy11494 179 A 179 (197)
Q Consensus 179 c 179 (197)
|
T Consensus 543 t 543 (574)
T smart00638 543 T 543 (574)
T ss_pred c
Confidence 7
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.18 Score=32.70 Aligned_cols=52 Identities=21% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
|.+++.+|..+.+................|..+|...+..|-..|+++||+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6788888887665554445556777888888888877889999999999975
|
... |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=92.78 E-value=3.4 Score=33.41 Aligned_cols=132 Identities=18% Similarity=0.099 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCc
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRV 124 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~ 124 (197)
|-..+.++.-|.-- .++.+-.+...+..+|...|+.|=+.|-.++-+|...|=....+-+= -+-+.-| .|..
T Consensus 5 R~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~---~~~l~~l-~D~~ 76 (178)
T PF12717_consen 5 RNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLF---SRILKLL-VDEN 76 (178)
T ss_pred HHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhh---HHHHHHH-cCCC
Confidence 44556666555422 13345678888888999999999999999999998754333222221 2222333 5566
Q ss_pred chhhHHHHHHHHHHHhh-CCchhHhhhhHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHHh
Q psy11494 125 EGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDFVFSAVRDPK--PEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 125 e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~Iw~aLrDpk--~~iRe~Aa~aL~~cL~ii~ 184 (197)
+.=|-.|..++.|++.. .|..||++++.++..+=..-.+|- ..-++.=..-+.-++..+.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 66778888899999999 999999999988886555443331 1233333444455555554
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.38 Score=33.43 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 113 KKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 113 ~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.-++.|..+....-|..|+..|.++.. +...+.+-..+.|+...||..|+.+|..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4456778677777778888888774432 2567777777899999999999999984
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.21 Score=41.49 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhh-CCchhHhhhhHHHHHH------------HhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 128 RHAAVLVLKELAVT-VPTIFYQHVQAFFDFV------------FSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 128 R~AAvLvLrELa~n-aPt~~~~~v~~~~d~I------------w~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|.+|...|..++++ -|-.||.|-+.||.-- =..++||..-+|-+|+.++.+.|.=
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 88999999999999 7779999988777554 4578999999999999999988753
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.2 Score=42.67 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=83.5
Q ss_pred hhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH--HHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhh
Q psy11494 75 RNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE--MKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQ 151 (197)
Q Consensus 75 ~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e--v~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~ 151 (197)
-.++.+++..|-+.|.|++|.++..|-. -.|+|=.. ++.-+.-+..+..-.-+--+.+.|.-|+++- |.==+..+.
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 4456677999999999999999988744 35554432 5555666665554445556889999999996 998999999
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 152 AFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 152 ~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+++.+-..|.+....|...|.-|+++.-
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998653
|
|
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=92.02 E-value=15 Score=38.43 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=84.3
Q ss_pred HHHHHHHhhhCCC--CChhHHHHH-HHHHHHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC
Q psy11494 68 IRFANYLRNLLPS--NDIGVMRYA-AKTVGKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP 143 (197)
Q Consensus 68 ~rf~~yL~~~l~~--~D~~vm~~A-A~~lG~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP 143 (197)
.....||..+-++ +|..-|... --++++++.- ++-+..++++.-+.....||.+.+.+- +-||+-+++-+...-|
T Consensus 781 ~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI-~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREI-AKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHcCC
Confidence 3455566666565 787777766 4566777765 556678899999999999999866655 5589999999999999
Q ss_pred c-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 144 T-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 144 t-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
- .+-+|++.++..+...+.|-+.-+|...--.|.
T Consensus 860 e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 860 EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8 667889999999999999988887776554443
|
|
| >KOG1851|consensus | Back alignment and domain information |
|---|
Probab=91.70 E-value=4.5 Score=43.33 Aligned_cols=102 Identities=24% Similarity=0.172 Sum_probs=80.5
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
+...+.-.|.+|++.||+++.-|...+--...+ +.+-..+..-......+.+.|+|||.|-.++..-|.++-..++.+
T Consensus 1574 ~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~--~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~ 1651 (1710)
T KOG1851|consen 1574 LESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS--DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKP 1651 (1710)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhccccccch--HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHH
Confidence 334445567899999999998887644333333 444444555555667789999999999999999999999999999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.++=.--||| ..|+.++.++++.
T Consensus 1652 L~~Ls~fa~e~-~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1652 LMNLSSFARES-AAIKQTVKKTVSE 1675 (1710)
T ss_pred HHHHHhhcCCc-hHHHHHHHHHHHH
Confidence 99998889999 9999999998874
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.4 Score=45.58 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=93.3
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcc-hhh---hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNV-NSR---NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~-~~~---~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
+.+|+.+.+.+.+.-.+.++..++.....+. ... ...-...|-.++.+++...-+.|+++++.++..--.....++
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4455556665556555666655554321110 000 113445666777788999999999999999874322333344
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch--hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI--FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~--~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
+.+ |...+.-|+....+.+|- |+.-|-.|+.....- .+---...+.-+-..|.+++..+++.|+.||..++.--..
T Consensus 649 ~agaIpPLV~LLss~~~~v~ke-AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQ-SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHH-HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH
Confidence 443 778888888755555554 555556666543221 1111122455577778999999999999999988875433
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.2 Score=42.39 Aligned_cols=148 Identities=17% Similarity=0.249 Sum_probs=88.0
Q ss_pred hhhCHHHHHHHHHHH-----------HHHHHHHhhCCchh----HHHHHHHHHHHHhhc--CC-----------Cc-chh
Q psy11494 15 REVTVEEVTAFTDAF-----------NHHIFEMVSANDVN----EKKSGIIAIVCLLHV--DV-----------GN-VNS 65 (197)
Q Consensus 15 re~s~e~~~~~~~~l-----------~~~I~~L~~s~d~~----eklggI~aId~Li~~--~~-----------~~-~~~ 65 (197)
+++++.....++..+ -+.+++|++++... =+-.+++++.+|+.- .. .. ...
T Consensus 407 ~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~ 486 (618)
T PF01347_consen 407 KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK 486 (618)
T ss_dssp T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GG
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH
Confidence 556666555544443 24467888765432 234789999999733 11 11 223
Q ss_pred hhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC--CcchhhHHHHHHHHHHHhhCC
Q psy11494 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD--RVEGKRHAAVLVLKELAVTVP 143 (197)
Q Consensus 66 ~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~--r~e~rR~AAvLvLrELa~naP 143 (197)
.+..|...|.......|..-...+=++||.+..+. +. +.....+.+. -...-|.+|+.-|+.++...|
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~---~i-------~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE---SI-------PVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG---GH-------HHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch---hh-------HHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 34446666665566789999999999999997652 11 2223334433 456689999999998877777
Q ss_pred chhHhhhhHHHHHHHhhhcCC--cHHHHHHHHHHHHHH
Q psy11494 144 TIFYQHVQAFFDFVFSAVRDP--KPEIRLHAVKAIRAA 179 (197)
Q Consensus 144 t~~~~~v~~~~d~Iw~aLrDp--k~~iRe~Aa~aL~~c 179 (197)
..+.+.+ |.-+.|+ ...||-+|...|-.|
T Consensus 557 ~~v~~~l-------~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 557 EKVREIL-------LPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHH-------HHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHH-------HHHhcCCCCChhHHHHHHHHHHhc
Confidence 6555544 4444554 566999999988877
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.4 Score=31.06 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 22 VTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
+-.....+++.+.++-.+.+..||+.++.+|..||...+.....-..+...-|+..+..+ ++-..|-++|.-+++.
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence 334455666666666567889999999999999999665554444555555556655544 6667889999988874
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=3.4 Score=45.63 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=99.4
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-+..++++++..-++.+..||..|.... ...++. .+ ....|-.++.++|..+...|+.+++.++..|-. ..++
T Consensus 655 PLV~LLss~~~~v~keAA~AL~nL~~~~--~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-~~ei 731 (2102)
T PLN03200 655 PCIKLLTNNTEAVATQSARALAALSRSI--KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-AAEA 731 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH-HHHH
Confidence 3667777777777888899998888532 222211 11 344566777889999999999999999997643 3444
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc--hhHhhh--hHHHHHHHhhhcCCcHHHHHH--HHHHHHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT--IFYQHV--QAFFDFVFSAVRDPKPEIRLH--AVKAIRAAL 180 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt--~~~~~v--~~~~d~Iw~aLrDpk~~iRe~--Aa~aL~~cL 180 (197)
.+. =|..-.+.|++...++ |-.|+..|.+|+++-|. .+-.++ --....+-..|+.++..+-.. |.++|....
T Consensus 732 ~~~~~I~~Lv~lLr~G~~~~-k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~ 810 (2102)
T PLN03200 732 LAEDIILPLTRVLREGTLEG-KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLA 810 (2102)
T ss_pred HhcCcHHHHHHHHHhCChHH-HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Confidence 432 2666677787655554 55566777889999883 232332 334445566677666666554 666666433
Q ss_pred HHHhhcchhhhhcCCCC
Q psy11494 181 VVTAQRESAKQSQKPQW 197 (197)
Q Consensus 181 ~ii~~Re~~~~~~~~~~ 197 (197)
+ .++ .-+..+|-|
T Consensus 811 ~---~~~-~~~~~~~~~ 823 (2102)
T PLN03200 811 R---TKG-GANFSHPPW 823 (2102)
T ss_pred h---hcc-cCCCCCCch
Confidence 3 333 333455655
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=4.1 Score=41.25 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=38.1
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhh
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~ 97 (197)
..+.++++.+|..-|..++.++..+-+ ......|...|..+|..|-..|+.+|+++.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 356677788888888887777754321 124445556666777777777777777774
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=4.6 Score=40.86 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=27.5
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
+..+++.++..=+...+.++..+-+-+ .. -...|..++...|+.|-..|+.+||++
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~---~~-----~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG---AP-----AGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc---ch-----hHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 344555555555655555554432111 00 012233445555666666666666655
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.4 Score=43.31 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHH
Q psy11494 80 SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVF 158 (197)
Q Consensus 80 ~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~-r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw 158 (197)
+.|.=|-..+++++|-.+..-|- .|+..-++-+-+. ++...|+.++-+.++++.-..-...+|+..+++.|=
T Consensus 292 ~~deYVRnvt~ra~~vva~algv-------~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALGV-------EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhCc-------HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 45666666677777766654322 1222333333333 488999999999999999999999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 159 SAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 159 ~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
..|.|-+.-||-.+|.+|++..+...
T Consensus 365 ~~l~D~~~~vRi~tA~alS~lae~~~ 390 (975)
T COG5181 365 KLLKDRSRFVRIDTANALSYLAELVG 390 (975)
T ss_pred HHhhccceeeeehhHhHHHHHHHhcC
Confidence 99999999999999999999887653
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.16 E-value=5.9 Score=39.22 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=34.1
Q ss_pred HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 147 YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 147 ~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
-+|++++...|...||+|.+.+|+.|++.....-.+++
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk 636 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLK 636 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999887777776
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=88.93 E-value=29 Score=35.33 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC
Q psy11494 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP 164 (197)
Q Consensus 85 vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp 164 (197)
+|..+.+++|+|-.. .+-...+|..++--+--+|....+..=. .+.+--....-..-+-+|++++..-|...|++|
T Consensus 736 ~~etv~ri~~~lg~~--diderleE~lidgil~Afqeqtt~d~vm--l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk 811 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAA--DIDERLEERLIDGILYAFQEQTTEDSVM--LLGFGTVVNALGGRVKPYLPQICSTILWRLNNK 811 (1172)
T ss_pred HHHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHhcccchhhh--hhhHHHHHHHHhhccccchHHHHHHHHHHhcCC
Confidence 666666666655432 1233345555555554455544444200 011111112222334678999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q psy11494 165 KPEIRLHAVKAIRAALVVTAQRESAKQSQ 193 (197)
Q Consensus 165 k~~iRe~Aa~aL~~cL~ii~~Re~~~~~~ 193 (197)
++.+|..|++..+-.-.+++.-...+...
T Consensus 812 sa~vRqqaadlis~la~Vlktc~ee~~m~ 840 (1172)
T KOG0213|consen 812 SAKVRQQAADLISSLAKVLKTCGEEKLMG 840 (1172)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999988876555443
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=88.70 E-value=20 Score=36.05 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=102.2
Q ss_pred HHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCc----hhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhC-CCCCh
Q psy11494 9 MVRTELREVTVEEVTAFTDAFNHHIFEMVSAND----VNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLL-PSNDI 83 (197)
Q Consensus 9 ~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d----~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l-~~~D~ 83 (197)
++.+..|-+.. .+....+++-..++.+++|++ ..|-+++|.++...++ ..-......|.-||..-| ...|.
T Consensus 578 ~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg---~~F~kym~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 578 TLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG---KGFAKYMPAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHhhcchHH
Confidence 44445555554 555566666666666666522 2445555555544443 333456778888888888 57899
Q ss_pred hHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHh---
Q psy11494 84 GVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFS--- 159 (197)
Q Consensus 84 ~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~--- 159 (197)
+|.-.|-...|.|++.=++-.--|-+.-+..-+..|+++. .++=|-+=.-+--.+|.+-.--|-+|+..+..-.-.
T Consensus 654 qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~ 733 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASS 733 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 9999999999999995444333344555677777777543 233333334444566666666666666554443332
Q ss_pred hhcCC--------cHHHHHHHHHHHHHHHHHH
Q psy11494 160 AVRDP--------KPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 160 aLrDp--------k~~iRe~Aa~aL~~cL~ii 183 (197)
+--|| -..+|++..+|....+.=+
T Consensus 734 ~~~d~~~~~~~dYvd~LRe~~leay~gi~qgl 765 (859)
T KOG1241|consen 734 VQTDPADDSMVDYVDELREGILEAYTGIIQGL 765 (859)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444 2356777777665544433
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=88.54 E-value=4.7 Score=32.42 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC-chhHhhhhHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP-TIFYQHVQAFFDFVFSAVRDP-KPEIRLHAVKAIRAALV 181 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP-t~~~~~v~~~~d~Iw~aLrDp-k~~iRe~Aa~aL~~cL~ 181 (197)
...-+.+-+.|....|++ +....|.+|+.+++.+..+.| ..|-.+-.+++..+-..|..| ...+.+.|..+|...+.
T Consensus 19 ~~~~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred CHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 455777788888888876 557778999999999999984 455599999999999999887 55678899999888887
Q ss_pred HHhhcch
Q psy11494 182 VTAQRES 188 (197)
Q Consensus 182 ii~~Re~ 188 (197)
.+.....
T Consensus 98 ~~~~~p~ 104 (165)
T PF08167_consen 98 LIRGKPT 104 (165)
T ss_pred HhcCCCc
Confidence 7765543
|
|
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=88.17 E-value=5.9 Score=41.37 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=88.0
Q ss_pred hhhhHHHHHHHhhhCC----CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHH
Q psy11494 64 NSRNIRFANYLRNLLP----SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELA 139 (197)
Q Consensus 64 ~~~~~rf~~yL~~~l~----~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa 139 (197)
.+.+.||+..+..+.. .+|+++-..|.-+|||+.-. .++|-++...--+--+......--|-=+|+-|--||
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 5668899999987763 46899999999999999864 688888888877777776565556666777888899
Q ss_pred hhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 140 VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 140 ~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
-.=|+++-++. ++++.-|+|+++.||+.|...|+..+
T Consensus 990 v~fpnlie~~T----~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 990 VRFPNLIEPWT----EHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred hhcccccchhh----HHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 88888877665 45677899999999999999988643
|
|
| >PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.92 Score=33.49 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=42.8
Q ss_pred chhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 125 EGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 125 e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+||+|||-|-.+...-|..+=++++.++..+=.-..| ...|+.++-++|+.-
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEF 56 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 468999999999999999999999999999998888888 568888888888753
|
This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.66 E-value=24 Score=32.95 Aligned_cols=157 Identities=10% Similarity=0.154 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhC-CchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 28 AFNHHIFEMVSA-NDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 28 ~l~~~I~~L~~s-~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
.+-++++.+..+ ++..+-.+++..+|+++.++.. ....++.+...|-.+.... ++-+.+-+++=.|++. ..+..
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~i-P~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S--~~g~~ 250 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDI-PSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS--HLGHS 250 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcC-ChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC--ccHHH
Confidence 344667777644 4445567999999999987532 3445777888887776555 6668888888888863 12222
Q ss_pred hHHHHHHHHHhhhcCCCcchhh-----HHHHHHHHHHHhhCCchhHhh--hhH--HHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKR-----HAAVLVLKELAVTVPTIFYQH--VQA--FFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR-----~AAvLvLrELa~naPt~~~~~--v~~--~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
. +..-++.|.++...+++ --||.+|+.+.-..+.--++. ... +++.+..+++-++..| +.+.+.
T Consensus 251 ~----i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v---~~eIl~ 323 (464)
T PF11864_consen 251 A----IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV---DYEILL 323 (464)
T ss_pred H----HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee---hHHHHH
Confidence 2 33344555333222222 268889999888874444433 344 8899999999777765 446666
Q ss_pred HHHHHHhhcchhhhhcCCCC
Q psy11494 178 AALVVTAQRESAKQSQKPQW 197 (197)
Q Consensus 178 ~cL~ii~~Re~~~~~~~~~~ 197 (197)
.|..++. ++-.+.-+.+.|
T Consensus 324 ~i~~ll~-~~~~~~l~~~~W 342 (464)
T PF11864_consen 324 LINRLLD-GKYGRELSEEDW 342 (464)
T ss_pred HHHHHHh-HhhhhhhcccCc
Confidence 6666765 444444555555
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=87.51 E-value=7.4 Score=29.51 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+.+++.+.+.=...+..||+.+|.||..||...++....-..+..-.|+..|..+ ++-..|=++|.-+++. +..+
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~---L~~~ 88 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKT---LKEE 88 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHh---CCHH
Confidence 3344333333333577999999999999999865554444555566666666544 4667777888877773 3334
Q ss_pred hHHHHHHHH
Q psy11494 107 YADFEMKKA 115 (197)
Q Consensus 107 ~Ve~ev~~A 115 (197)
-++.-++.-
T Consensus 89 ~l~~ll~~~ 97 (107)
T smart00802 89 ELGPLLDQI 97 (107)
T ss_pred HHHHHHHHH
Confidence 444444433
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=87.42 E-value=4.5 Score=35.56 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchh---hHHHHHHHHHHHhhCCc
Q psy11494 70 FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGK---RHAAVLVLKELAVTVPT 144 (197)
Q Consensus 70 f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~r---R~AAvLvLrELa~naPt 144 (197)
|..+++ .+..+|..+...|+..++.|+..++......++..++.-+.||...-.... ...|+-.|.+|++.-+.
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 444454 778889999999999999999998887777778888999999986333222 37888888888876544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=87.35 E-value=28 Score=35.10 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=119.3
Q ss_pred HHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcch---hh--------hHHHHHHHh
Q psy11494 7 ASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVN---SR--------NIRFANYLR 75 (197)
Q Consensus 7 ~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~---~~--------~~rf~~yL~ 75 (197)
+..-+....+.+.++|.+|...+..-+-+ -++++.....+|+.-=+.|..=|..-.. ++ -..--+++.
T Consensus 18 ~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il 96 (859)
T KOG1241|consen 18 RKRAEKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNIL 96 (859)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445667778888899998877644333 3556656677888777777644321111 11 122345566
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhc--cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhhH
Q psy11494 76 NLLPSNDIGVMRYAAKTVGKLAQI--SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQA 152 (197)
Q Consensus 76 ~~l~~~D~~vm~~AA~~lG~L~~~--gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~ 152 (197)
+.|-+..+.....||.++|.+|.. +-..--++++..+.. ...+...+-|-+.+.-|-.++.. .|-++-.+.+.
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n----v~~~~~~~~k~~slealGyice~i~pevl~~~sN~ 172 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN----VGEEQASMVKESSLEALGYICEDIDPEVLEQQSND 172 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh----cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhH
Confidence 667778888999999999999973 222333444333222 12333446677888888888888 78899999999
Q ss_pred HHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHHh
Q psy11494 153 FFDFVFSAVRD--PKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 153 ~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~ii~ 184 (197)
++..|=-+.|- |+..||-+|..||-.||..+.
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 99998877774 799999999999999999887
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=86.40 E-value=7.2 Score=40.38 Aligned_cols=109 Identities=23% Similarity=0.240 Sum_probs=77.4
Q ss_pred chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-
Q psy11494 63 VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT- 141 (197)
Q Consensus 63 ~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n- 141 (197)
.+.-+-.+...|...+...|..|-=-|||-+|++... ++.++++.=|+.-++.+..-..++-=|-|+|+|-|||..
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r---lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR---LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc---CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 4444556677777778889999999999999999874 457777777777888443323466778999999999998
Q ss_pred --CCchhHhhhhHHHHHHHhhh----cCCcHHHHHHHHH
Q psy11494 142 --VPTIFYQHVQAFFDFVFSAV----RDPKPEIRLHAVK 174 (197)
Q Consensus 142 --aPt~~~~~v~~~~d~Iw~aL----rDpk~~iRe~Aa~ 174 (197)
-|+.+-.-++-+...+.--. +..-..||++|.=
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY 450 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACY 450 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence 56666555555554443322 2346789988753
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=86.14 E-value=11 Score=40.42 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhCCch-hHHHHHHHHHHHHh-hcCCCcchhhhHHHHHHHhhhCCC---CChhHHHHHHHHHHHhhhccC
Q psy11494 27 DAFNHHIFEMVSANDV-NEKKSGIIAIVCLL-HVDVGNVNSRNIRFANYLRNLLPS---NDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~-~eklggI~aId~Li-~~~~~~~~~~~~rf~~yL~~~l~~---~D~~vm~~AA~~lG~L~~~gG 101 (197)
.++-.++.+++.|+-. .-|-|...-|-.|. .+. .| ..+-...|++-++|+ ....+-+.=|-++|+|++.+
T Consensus 1234 eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~-~e---mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S- 1308 (1702)
T KOG0915|consen 1234 EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG-SE---MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS- 1308 (1702)
T ss_pred HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc-cc---cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC-
Confidence 3455788899976554 33555555554443 222 22 234566778888885 36788888899999999863
Q ss_pred cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP 164 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp 164 (197)
..|=.++.++.-+.|+-+++...+..+=..+.. ++.++|+.+-.|...|+..|+.+-.+-
T Consensus 1309 --s~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1309 --SPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred --ChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 345677888888999987666665554445555 999999999999999999888776554
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=41 Score=33.79 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH---HHHHHhhhcCC
Q psy11494 46 KSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE---MKKAIEWLGGD 122 (197)
Q Consensus 46 lggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e---v~~AlewL~~~ 122 (197)
-|=+..++.|......+ ......+.+.+...|.+.+..|+-.|++++=++.... ..+.++.- ++.++=-|. .
T Consensus 234 W~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~-s 308 (746)
T PTZ00429 234 WGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLS-R 308 (746)
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhh-C
Confidence 44556677776543222 2334567777777788888999999999998887542 23444433 334444453 3
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
...+-+|.++--|..++...|.+|-+++..|
T Consensus 309 s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F 339 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIFPNLLRTNLDSF 339 (746)
T ss_pred CCccHHHHHHHHHHHHHHHCHHHHHHHHHhh
Confidence 4567899999999999999999998875433
|
|
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=85.30 E-value=29 Score=36.01 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHh----hcCCCcchhhhHHHHHHHhhhCCCC-Ch---hHHH----
Q psy11494 20 EEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLL----HVDVGNVNSRNIRFANYLRNLLPSN-DI---GVMR---- 87 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li----~~~~~~~~~~~~rf~~yL~~~l~~~-D~---~vm~---- 87 (197)
-...+..+.+-+.|..+++||-. +.|+..+.--+. ..+..+ +- |.+.++.+.... +. .+-+
T Consensus 726 s~l~~~~~~iL~~ii~ll~Spll--qg~al~~~l~~f~alV~t~~~~----l~-y~~l~s~lt~PV~~~~~~~l~kqa~~ 798 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSPLL--QGGALSALLLFFQALVITKEPD----LD-YISLLSLLTAPVYEQVTDGLHKQAYY 798 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCccc--cchHHHHHHHHHHHHHhcCCCC----cc-HHHHHHHHcCCcccccccchhHHHHH
Confidence 34455666777788889999886 455544443221 112122 11 444444443211 11 1222
Q ss_pred HHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHH
Q psy11494 88 YAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPE 167 (197)
Q Consensus 88 ~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~ 167 (197)
.-|++...|....+....-.+.+-++. ..........|+.|.|.|-|+.++.|+. ..+.+++-|-.++-.|+..
T Consensus 799 siA~cvA~Lt~~~~~~s~s~a~kl~~~---~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iieaf~sp~ed 872 (1233)
T KOG1824|consen 799 SIAKCVAALTCACPQKSKSLATKLIQD---LQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEAFNSPSED 872 (1233)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHH---HhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHHcCCChHH
Confidence 235555555554433333333333222 2335567889999999999999998875 3456777899999999999
Q ss_pred HHHHHHHHHHHH
Q psy11494 168 IRLHAVKAIRAA 179 (197)
Q Consensus 168 iRe~Aa~aL~~c 179 (197)
|+-+|+-||.+.
T Consensus 873 vksAAs~ALGsl 884 (1233)
T KOG1824|consen 873 VKSAASYALGSL 884 (1233)
T ss_pred HHHHHHHHhhhh
Confidence 999999999864
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=84.70 E-value=6.8 Score=39.59 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=94.3
Q ss_pred hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchh
Q psy11494 67 NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 67 ~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.+++.-.|..-+.+.|-.=-..|.+.+...+...+.....--..++.+.+.-...|-+-+...=|+..|..+|...++.|
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 34555566667777888888888888888887655333444456677777777778888888889999999999999999
Q ss_pred HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 147 YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 147 ~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
++|+..++..++..+.|.+..+|+++..++.+.+.
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988876
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=83.88 E-value=8.4 Score=33.81 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-ch---hhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VN---SRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~---~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.+..++.+.+++|..=+.-+...+..|+..+... .. .-+..|.++|+..+.++|.++...|..+++.|++.... -
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~-R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY-R 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH-H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh-H
Confidence 4566777888889888888888888888665333 22 45788999999988888999999999999999986432 2
Q ss_pred hhhHHH-HHHHHHhhh------cCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC-cHHHHHHHHHHH
Q psy11494 105 AEYADF-EMKKAIEWL------GGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP-KPEIRLHAVKAI 176 (197)
Q Consensus 105 ~~~Ve~-ev~~AlewL------~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp-k~~iRe~Aa~aL 176 (197)
.-|++. -++.-..-| .+...-.--|-+++.+--|.-+.+..-...-..++..+...+++. |.=|=.-+..+|
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHH
Confidence 223332 233444444 222233345666666666655533311111111555555444443 333333344444
Q ss_pred HHHH
Q psy11494 177 RAAL 180 (197)
Q Consensus 177 ~~cL 180 (197)
+.|+
T Consensus 265 ~Nl~ 268 (312)
T PF03224_consen 265 RNLL 268 (312)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=83.81 E-value=1.6 Score=26.64 Aligned_cols=25 Identities=44% Similarity=0.403 Sum_probs=20.7
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhhh
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
|-.+|.+.|.++.+.|++++|.|+.
T Consensus 17 Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 17 LVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4445558999999999999999874
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=83.75 E-value=7.7 Score=39.22 Aligned_cols=63 Identities=13% Similarity=0.268 Sum_probs=58.7
Q ss_pred CCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 121 GDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 121 ~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+-+++..||.++-+.+++|.-..-.+.+|+..+.+.|=.+|.|-+.-||..+|.|+++..+..
T Consensus 522 SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 522 SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 445889999999999999999999999999999999999999999999999999999987654
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=82.63 E-value=22 Score=35.61 Aligned_cols=155 Identities=9% Similarity=0.082 Sum_probs=109.4
Q ss_pred hHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChh
Q psy11494 5 TGASMVRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIG 84 (197)
Q Consensus 5 ~~~~~v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~ 84 (197)
.++..-+..+..+..|-.++.+|-+-.+.++.++.+.+.=|.-++-++++.|=.........+-+|...|-.+-...|++
T Consensus 151 AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 151 ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHH
Confidence 35555666667777777788999999999999988888667788999998886553333333445555555554567899
Q ss_pred HHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhh---cCCCcchhhHHHHHHHHHHHhh--CCchhHhhhhHHHHHHHh
Q psy11494 85 VMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWL---GGDRVEGKRHAAVLVLKELAVT--VPTIFYQHVQAFFDFVFS 159 (197)
Q Consensus 85 vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL---~~~r~e~rR~AAvLvLrELa~n--aPt~~~~~v~~~~d~Iw~ 159 (197)
|-+.-..++-.|.-. -.|=....+...+|++ -.+-.|+=-+-||=+.-.+|++ .++++-+|++++..-+..
T Consensus 231 VRk~vC~alv~Llev----r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEV----RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHHHHHHHHh----cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 999999999888742 1222223344444444 1355677777899999999998 677899999998888777
Q ss_pred hhcC
Q psy11494 160 AVRD 163 (197)
Q Consensus 160 aLrD 163 (197)
.++=
T Consensus 307 ~M~Y 310 (885)
T KOG2023|consen 307 GMVY 310 (885)
T ss_pred cCcc
Confidence 6653
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.31 E-value=18 Score=35.63 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHhhCCchhHHHHH-HHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 33 IFEMVSANDVNEKKSG-IIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 33 I~~L~~s~d~~eklgg-I~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+.++.+.+..-..|- .+||..|-.--+..-....++|.-||.+.|.+.|..|.-.|-...|.|++.-|+----|-+--
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ 681 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVL 681 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444433222232 345555542111123456778999999999999999999999999999996554332233444
Q ss_pred HHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCCchhHhhhhHHH
Q psy11494 112 MKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFF 154 (197)
Q Consensus 112 v~~AlewL~~~-r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~ 154 (197)
..+-...|+++ -.++-|-|=.-+.-.+|.+-..-|-+|++.+.
T Consensus 682 ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 682 MSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred HHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555555532 23334455555666777777777777755443
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=81.13 E-value=43 Score=30.64 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=99.4
Q ss_pred HHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHH--HhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 33 IFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANY--LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 33 I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~y--L~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
+..+- +|.|..+|.+++-=|..|++- .|+++.+..+... |-..+...|.++-..||+|+|..+..--..+..+.|
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33444 678899999988888777632 3555555554432 333677889999999999999999864334444554
Q ss_pred HH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHh--hhhHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHH
Q psy11494 110 FE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQ--HVQAFFDFVFSAVRD--PKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 110 ~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~--~v~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~ 181 (197)
.= ...-+.-|..+.....|-.|..-+.-|-+|-|--.-. .++. +..+-.++-+ .++..+.-|+..++..+.
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 33 2233345567888888999999999999996653333 3444 5666777777 577777778887776664
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=80.81 E-value=6.2 Score=31.48 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc--chhhhHHHHHHHhhhCC--CCChhHHHHHHHHHHHhhhcc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIRFANYLRNLLP--SNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~--~~~~~~rf~~yL~~~l~--~~D~~vm~~AA~~lG~L~~~g 100 (197)
|.+.+..-|..++..++..+++.++.++.+|.....+- .--.-..|-..+...+. ++|..+...+.+++..=+..
T Consensus 40 ~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d- 118 (157)
T PF11701_consen 40 FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID- 118 (157)
T ss_dssp HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-
Confidence 55556666777777777778999999999998664211 11111246677777776 78999999999998765543
Q ss_pred CcchhhhHHHHHHHHHhhhcC----CCcch-hhHHHHHHH
Q psy11494 101 GTFSAEYADFEMKKAIEWLGG----DRVEG-KRHAAVLVL 135 (197)
Q Consensus 101 G~~~~~~Ve~ev~~AlewL~~----~r~e~-rR~AAvLvL 135 (197)
.+.-++=.+.+++||.. +..+. -|..|+++|
T Consensus 119 ----~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 119 ----KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp ----HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 23333446778899962 23333 466666665
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=80.70 E-value=55 Score=31.37 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHHHHhhcCCCcchhhhH-HHHHHHhhhCC----CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH
Q psy11494 41 DVNEKKSGIIAIVCLLHVDVGNVNSRNI-RFANYLRNLLP----SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA 115 (197)
Q Consensus 41 d~~eklggI~aId~Li~~~~~~~~~~~~-rf~~yL~~~l~----~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A 115 (197)
...++.+|+.-|-.++-.++.. .+. -|+..|..++. +.|...-+.|=++++++++.-.+.--|.+|--|..-
T Consensus 300 ~a~~~k~alsel~~m~~e~sfs---vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~ 376 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFS---VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKV 376 (516)
T ss_pred chhHHHHHHHHHHHHHHccchh---HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHH
Confidence 4567788888777777544222 122 25555554443 357777788889999999875554444444322222
Q ss_pred Hhhh-------------------cCC--------------CcchhhHHHHH-HHHHHHhhCCc-hhHhhhhHHHHHHHhh
Q psy11494 116 IEWL-------------------GGD--------------RVEGKRHAAVL-VLKELAVTVPT-IFYQHVQAFFDFVFSA 160 (197)
Q Consensus 116 lewL-------------------~~~--------------r~e~rR~AAvL-vLrELa~naPt-~~~~~v~~~~d~Iw~a 160 (197)
||-= ... .-+..|..+|+ ++++|.+.-+- ...+.++.|...+..|
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 2211 000 02334444555 88999999777 7788899999999999
Q ss_pred hcCCcHHHHHHHHHHHHHH
Q psy11494 161 VRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 161 LrDpk~~iRe~Aa~aL~~c 179 (197)
--.++..||.+|+=+|=+.
T Consensus 457 y~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hcCchHHhhhhHHHhHHHH
Confidence 9999999999998644443
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=80.57 E-value=21 Score=37.91 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-ch----hhhHHHHHHHhh------hCCCCChhHHHHHH
Q psy11494 22 VTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VN----SRNIRFANYLRN------LLPSNDIGVMRYAA 90 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~----~~~~rf~~yL~~------~l~~~D~~vm~~AA 90 (197)
|..|..++- +.+-++.-+-+-||.+|+-.+....+.. +. ..++||..-+.- +.++.=..|-+.-|
T Consensus 75 f~s~~e~L~----~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 75 FLSFLEELV----NDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred HHHHHHHHH----HHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 444444443 2233444455778888888887665433 11 112232222210 01223346778889
Q ss_pred HHHHHhhhcc-CcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHH
Q psy11494 91 KTVGKLAQIS-GTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIR 169 (197)
Q Consensus 91 ~~lG~L~~~g-G~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iR 169 (197)
++||.+.++- -++..++++. +..+......+.|+.+.+.+|+..--=-..++...+.+++.+-..|-|+..-+|
T Consensus 151 q~L~~~l~~~~~s~~~~~~~i-----l~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~ 225 (1549)
T KOG0392|consen 151 QALGAYLKHMDESLIKETLDI-----LLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVR 225 (1549)
T ss_pred HHHHHHHHhhhhHhhHHHHHH-----HHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Confidence 9999998751 1122222222 222222337788999999998765533335557788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11494 170 LHAVKAIRAALVVTAQ 185 (197)
Q Consensus 170 e~Aa~aL~~cL~ii~~ 185 (197)
..|+..|--...+.-.
T Consensus 226 ~~aa~~l~~~~s~~v~ 241 (1549)
T KOG0392|consen 226 SVAAQFLVPAPSIQVK 241 (1549)
T ss_pred HHHHHHhhhhhHHHHh
Confidence 9999988877776633
|
|
| >cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 | Back alignment and domain information |
|---|
Probab=80.17 E-value=13 Score=27.53 Aligned_cols=73 Identities=5% Similarity=-0.046 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHH-HHHHhhhCCCCChhHHHHHHHHHHHh
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRF-ANYLRNLLPSNDIGVMRYAAKTVGKL 96 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf-~~yL~~~l~~~D~~vm~~AA~~lG~L 96 (197)
++..++-+.|.+-++...+..|+++++.+|.++.-........+..| .+.+..++...|.++...--++++-+
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 45556666677878777778999999999999865434434444444 66666667777888877666666544
|
Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 197 | |||
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 4e-04 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 8e-04 |
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 58 VDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117
V + + + L + + A + KL + F E+A + +
Sbjct: 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE---KFGKEWAHATIIPKVL 486
Query: 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
+ GD R + + L+ + V DP +R + K++
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTVLRMAGDPVANVRFNVAKSL 543
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 38.5 bits (88), Expect = 8e-04
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVL 133
L + G A+ +GKL I + ++ R + V
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVT 987
Query: 134 VLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180
+K P ++ + DP +R A+ +A
Sbjct: 988 AVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 197 | |||
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.1 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.58 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.34 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.33 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.26 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.22 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.18 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.17 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.12 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.09 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.09 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.08 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.08 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.05 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.04 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.02 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.98 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.91 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.9 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.88 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.86 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.81 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.79 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.77 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.75 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.61 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.59 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.46 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 97.45 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.42 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.39 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.3 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 97.29 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.27 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 97.26 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 97.14 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 97.08 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.05 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.97 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 96.88 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 96.87 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 96.87 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 96.84 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.75 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 96.69 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 96.69 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 96.64 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 96.63 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 96.63 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 96.54 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 96.45 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.3 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.28 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 96.19 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 96.1 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.08 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 95.96 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.93 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 95.9 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 95.88 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.56 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 95.47 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.44 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 95.28 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.24 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.08 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.85 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 94.84 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 94.74 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 94.72 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 94.57 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 94.4 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 94.06 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 93.86 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 93.59 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 93.53 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 93.25 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.72 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 92.59 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 92.03 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 91.44 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 91.44 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 91.2 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 91.03 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 89.97 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 89.51 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 89.18 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 89.13 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 88.31 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 88.27 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 86.32 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 85.39 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 84.83 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 84.51 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 82.59 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.04 |
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-09 Score=87.10 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=122.4
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
..+++.++|++-.+|++|+.+|..+++....-....+.++.++|...+. .++..|+..|..++|.|+...|.....|++
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3478889999999999999999999976211122346789999999996 899999999999999999987776677888
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
.-+..-++-+.. .+..=|-+|.-.|..++.+.| +..+++.+..++.|++..+|+.+...|..|+.-
T Consensus 98 ~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 98 ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 888888888865 556678899999999998765 578899999999999999999999999988754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=72.28 Aligned_cols=149 Identities=9% Similarity=0.146 Sum_probs=116.6
Q ss_pred HHHHhhCCchhHHHHHHHHHHH-Hhh-cC-CCcchhhhHHHHHHHhhhC-CCCChhHHHHHHHHHHHhhhccC-cchh-h
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVC-LLH-VD-VGNVNSRNIRFANYLRNLL-PSNDIGVMRYAAKTVGKLAQISG-TFSA-E 106 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~-Li~-~~-~~~~~~~~~rf~~yL~~~l-~~~D~~vm~~AA~~lG~L~~~gG-~~~~-~ 106 (197)
..+.+.|++-.||+.++.+|.. +++ .. .......+..+..-|.+.+ ...+..|...|..++|.|+..-+ .-.. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4667799999999999999999 873 21 1110222456777788888 57889999999999999998644 4445 8
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|...-+...++-+...+...+. +|.--|..++.+. |...+++++.+++.|..+|.+++..+|+.+..+|..|+.-
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~-aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIE-AIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHH-HHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 8888899999999765555554 4555588899885 5555566999999999999999999999999999999864
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-05 Score=62.72 Aligned_cols=153 Identities=9% Similarity=0.126 Sum_probs=113.1
Q ss_pred HHHHHHHHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 27 DAFNHHIFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 27 ~~l~~~I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.++...+..++ +.++.+=+.+|+.++..|...-+.+-......+...|-..+..++..|-..|..++..++...+
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---- 130 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---- 130 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----
Confidence 34555666677 4788777889999999998432223233344455555555556778899999999999987542
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-Cc-hhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PT-IFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt-~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
++.-+..-++.|+. ++..-|..++-.|..++.+. |. .+-++++.+++.+...+.|++..||.+|.+++......+
T Consensus 131 --~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 131 --LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp --HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 23344455666664 46677888888888876665 66 677899999999999999999999999999999988888
Q ss_pred hhc
Q psy11494 184 AQR 186 (197)
Q Consensus 184 ~~R 186 (197)
-.+
T Consensus 208 g~~ 210 (242)
T 2qk2_A 208 GDK 210 (242)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=73.35 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc--
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF-- 103 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~-- 103 (197)
..+.+.+.+++++++...|.+++.++..+.+.-. ......+..+...|...+...+..|-..|++++|+++...|.-
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3445556667778888899999999999985421 1122334445556666666678889999999999999864431
Q ss_pred hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC----CchhHhhhhHHHHHHHhhhc--CCcHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV----PTIFYQHVQAFFDFVFSAVR--DPKPEIRLHAVKAIR 177 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na----Pt~~~~~v~~~~d~Iw~aLr--Dpk~~iRe~Aa~aL~ 177 (197)
..++++.-+...++.|+.+ ..-|.+|+..|..++... |..+-+|++.+++.+...+. |++..+|..+.+++.
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 3567777777777778654 556778888999999885 47788999999999999998 555899999999998
Q ss_pred HHHHHH
Q psy11494 178 AALVVT 183 (197)
Q Consensus 178 ~cL~ii 183 (197)
.+....
T Consensus 526 ~l~~~~ 531 (861)
T 2bpt_A 526 TMVEYA 531 (861)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 876543
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=78.70 Aligned_cols=158 Identities=10% Similarity=0.084 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 22 VTAFTDAFNHHIFEMVS-ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~-s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
...++.++-..+++.++ +++..-+.+++.++..+.+..+.........+...|...+...+..|-..|..++|.++...
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 45688899999999998 57777788999999888854333333345677777777887788899999999999999764
Q ss_pred CcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 101 GTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 101 G~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
|. ++++.-+..-++.|..+....-|-+|+-.|-+++...|..|-+|++.+++.+...+.|++..+|+.|..++....
T Consensus 207 ~~---~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 207 GN---IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 32 233333445555555433345566789999999999999999999999999999999999999999999988766
Q ss_pred HH
Q psy11494 181 VV 182 (197)
Q Consensus 181 ~i 182 (197)
..
T Consensus 284 ~~ 285 (1230)
T 1u6g_C 284 RR 285 (1230)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-05 Score=74.63 Aligned_cols=152 Identities=6% Similarity=0.050 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc---
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF--- 103 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~--- 103 (197)
+.+-..+++.+.+++..-|..++.+|..+.+.-. ...+..+-..|...+...+..+-..|+.++|.++...|..
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~---~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 3455567777888888889999999999985421 1345556666666777778888889999999999764432
Q ss_pred ---hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 104 ---SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 104 ---~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
...+...-+..-++.+........|..|+.+|.+++...|..+-+|++.+++.+...+.||+..||+.|+.|+..+.
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34456666666677776445667899999999999999999899999999999999999999999999999988765
Q ss_pred H
Q psy11494 181 V 181 (197)
Q Consensus 181 ~ 181 (197)
.
T Consensus 204 ~ 204 (1230)
T 1u6g_C 204 M 204 (1230)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=61.31 Aligned_cols=155 Identities=13% Similarity=0.080 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
+.+.....+..|++++|..-+..++.+|..|.... .+....+. .....|-.+|.+.|..+...|++++|.++.....
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 44456778999999999999999999998887432 11111111 2445677778888999999999999999864323
Q ss_pred chhhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 103 FSAEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 103 ~~~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
....+++.. +..-++.|+.+ ...-|..|+..|..|+...|......+ ...++.+-..+.+++..+|+.|+.+|..+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333344433 44555556554 466678889999999987766433322 457888888999999999999999998765
Q ss_pred H
Q psy11494 181 V 181 (197)
Q Consensus 181 ~ 181 (197)
.
T Consensus 167 ~ 167 (210)
T 4db6_A 167 S 167 (210)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00012 Score=61.21 Aligned_cols=152 Identities=9% Similarity=0.117 Sum_probs=110.9
Q ss_pred HHHHHHHHHh-hCCchhHHHHHHHHHHHHhhcCC-CcchhhhHHHH-HHHhhhCC-------CCChhHHHHHHHHHHHhh
Q psy11494 28 AFNHHIFEMV-SANDVNEKKSGIIAIVCLLHVDV-GNVNSRNIRFA-NYLRNLLP-------SNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 28 ~l~~~I~~L~-~s~d~~eklggI~aId~Li~~~~-~~~~~~~~rf~-~yL~~~l~-------~~D~~vm~~AA~~lG~L~ 97 (197)
++.+.+-..+ +.+++.-+.+++.||..|...-. . .|. .|...++| .+...|...|..++=.++
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~-------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~ 132 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP-------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC 132 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT-------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc-------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3444455566 67777778899999988873221 1 233 44443333 344677787777877777
Q ss_pred hccCcch-hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC---chhHhhh-hHHHHHHHhhhcCCcHHHHHHH
Q psy11494 98 QISGTFS-AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP---TIFYQHV-QAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 98 ~~gG~~~-~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP---t~~~~~v-~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
..-+... .-+.+.-+..-++.|+.. +..-|.+++..|..++.++| ..|-+++ +.+++.+-..+.|++..||++|
T Consensus 133 ~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 133 KYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp HHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 6532111 112556677778888764 66889999999999999988 5688999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy11494 173 VKAIRAALVVTAQRE 187 (197)
Q Consensus 173 a~aL~~cL~ii~~Re 187 (197)
.+++..+..++-.|+
T Consensus 212 ~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 212 FESFAILIKIFGMNT 226 (249)
T ss_dssp HHHHHHHHHHHCSGG
T ss_pred HHHHHHHHHHhCHHH
Confidence 999999998887764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-05 Score=73.79 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-----chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 25 FTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-----VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-----~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
.|.++-..+.+++++++.+-+.+|+.++..+.+.-... ....+..+...|..++...+..|-..|.++++.++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 45567778889999999899999999999887542111 0111344455556667778999999999999988865
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.+....+.++.-++.-+..++ +..+.-|.+|+-.|-+|+...|..+-+|++.+++.+|..+.|+...||..|.+++..+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 332222333333444444444 4556677888999999999999999999999999999999999999999999887765
Q ss_pred H
Q psy11494 180 L 180 (197)
Q Consensus 180 L 180 (197)
.
T Consensus 284 ~ 284 (852)
T 4fdd_A 284 A 284 (852)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0001 Score=58.63 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=106.2
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
..+.+++++++...+..++.+|..|...+. +....+. .....|..++.+.|..+...|++++|.++.........++
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 467888888888888899999988875542 2121121 2566777788889999999999999999876433344444
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
+.. +..-++.|.. ..+.-|..|+..|..|+...|...-..+ ...++.+...+++++..+|..|+.+|...
T Consensus 84 ~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 84 DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 433 4444555554 5567788999999999976665333222 35788888999999999999999998864
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00013 Score=68.17 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 21 EVTAFTDAFNHHIFEMVSANDV-NEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~s~d~-~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
.+..|.+.+...+.+++++++. .-+..++.+|..+...-+.+-...+..+...|...+...+.++...|..++|.++..
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445677788888888877654 457778888888876544444445666777777777677889999999999999998
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc-----------HH
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK-----------PE 167 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk-----------~~ 167 (197)
.|.....|++.-+...++-|+.+. ...-|-+++..|..++.+.|.-|.+|++.++..+...+..+. ..
T Consensus 670 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~ 749 (861)
T 2bpt_A 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIK 749 (861)
T ss_dssp TGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHH
T ss_pred hchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 776666777777777777787543 356788999999999999999999999999999999887431 57
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy11494 168 IRLHAVKAIRAALVVTA 184 (197)
Q Consensus 168 iRe~Aa~aL~~cL~ii~ 184 (197)
+|+++.+++...+.-+.
T Consensus 750 vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999888775543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-05 Score=60.64 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=106.7
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
+..++++++|+|...+..++.++..++..+ .+....+ ......|-.+|.+.|.++...|++++|.++.........+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 567888999999999999999997666432 1111111 1244566777788899999999999999987433334445
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch-hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI-FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~-~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++. -+..-++.|+. ..+.-|..|+..|..|+.+.+.. -...-...++.+-..|.|++..+|+.|+.+|....
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 544 34555566665 45667888999999999887765 22233457788888899999999999999988553
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00014 Score=62.91 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=106.2
Q ss_pred HHHHHHHhhCC--chhHHHHHHHHHHHHhhcCCCc------------chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHH
Q psy11494 30 NHHIFEMVSAN--DVNEKKSGIIAIVCLLHVDVGN------------VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGK 95 (197)
Q Consensus 30 ~~~I~~L~~s~--d~~eklggI~aId~Li~~~~~~------------~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~ 95 (197)
...+.+++.++ +..-|.-+...+..++...-.. ........-+.|-..+...+..+ ..++.++|.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ 115 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAG 115 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHH
Confidence 33455555443 5677888888888887542100 11112234445555666777888 999999999
Q ss_pred hhhccCc--chhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCC--cHHHH
Q psy11494 96 LAQISGT--FSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDP--KPEIR 169 (197)
Q Consensus 96 L~~~gG~--~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDp--k~~iR 169 (197)
++...+. .-.+++..-+ +.++.+. ....|.+|+.+|..++... |..+.++++.++..+-..+.|+ +..||
T Consensus 116 ia~~~~~~~~w~~ll~~L~----~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 116 IACAEIPVNQWPELIPQLV----ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHHGGGTCCTTHHHHHH----HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHhccccccHHHHHHHH----HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHH
Confidence 9987432 2345554443 3444432 6678999999999999986 8888999999999999999999 79999
Q ss_pred HHHHHHHHHHHHHH
Q psy11494 170 LHAVKAIRAALVVT 183 (197)
Q Consensus 170 e~Aa~aL~~cL~ii 183 (197)
..|+.++..++..+
T Consensus 192 ~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 192 LAATNALLNSLEFT 205 (462)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876544
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00013 Score=69.42 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC-cchh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG-TFSA 105 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG-~~~~ 105 (197)
..+...+.+++++++...|.+++.|+..+.+.-..........+...|...+...+..|-..|++++|+++...+ ....
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 345667778888899999999999999998654323334566677778888888899999999999999998532 3345
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
.+.+.-+..-++.|..+ ...-|-+|+..|..++.+.+..+.+|++.+++.+...+.+++......+.+++.....
T Consensus 438 ~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp TTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 67776677777777643 4556778889999999998888999999999999999998877666666666665543
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00014 Score=62.88 Aligned_cols=159 Identities=12% Similarity=0.054 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHhh-cCCCcchhhhHHHHHHHhhhCCCC--ChhHHHHHHHHHHHhhhc
Q psy11494 25 FTDAFNHHIFEMVSAN--DVNEKKSGIIAIVCLLH-VDVGNVNSRNIRFANYLRNLLPSN--DIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 25 ~~~~l~~~I~~L~~s~--d~~eklggI~aId~Li~-~~~~~~~~~~~rf~~yL~~~l~~~--D~~vm~~AA~~lG~L~~~ 99 (197)
.|.++-..+.+.++++ |..-+.+++.++..+.+ +.+.........+...+..++... +..|-..|.+++|.++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456777788888887 88889999999999985 322222333445666666667655 688889999999997642
Q ss_pred cC-cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh-HHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 100 SG-TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ-AFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 100 gG-~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~-~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
-+ .+..+.....+-..+.-+-.+..+.-|-+++-.|.+++...|..|-+|++ .+++.++..++|+...||..|.+++.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 11 11111111111222222223455667888999999999999999999999 99999999999999999999999888
Q ss_pred HHHHHH
Q psy11494 178 AALVVT 183 (197)
Q Consensus 178 ~cL~ii 183 (197)
.+....
T Consensus 285 ~~~~~~ 290 (462)
T 1ibr_B 285 NVCDEE 290 (462)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00026 Score=66.29 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCC-ChhHHHHHHHHHHHh
Q psy11494 20 EEVTAFTDAFNHHIFEMVSAND--VNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSN-DIGVMRYAAKTVGKL 96 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d--~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~-D~~vm~~AA~~lG~L 96 (197)
+.+..|...+...+..+++++. ..-+..++.+|..++..-+.+-...+..+...|..++... +..+...|.+++|.+
T Consensus 598 ~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 598 QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 6777788888899999987653 1336678888888876432333334455666666666654 788999999999999
Q ss_pred hhccCcchhhhHHHHHHHHHhhhcC-CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc----------
Q psy11494 97 AQISGTFSAEYADFEMKKAIEWLGG-DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK---------- 165 (197)
Q Consensus 97 ~~~gG~~~~~~Ve~ev~~AlewL~~-~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk---------- 165 (197)
+...|.-...+++.-+...++.|.. +..+.-|.+++..+..++...|.-|.+|++.+++.+-.++.++.
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~ 757 (876)
T 1qgr_A 678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDY 757 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHH
Confidence 9876655566777777778888875 34556788999999999999998899999999999999887663
Q ss_pred -HHHHHHHHHHHHHHHHHHh
Q psy11494 166 -PEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 166 -~~iRe~Aa~aL~~cL~ii~ 184 (197)
..+|+.+.+++...+.-+.
T Consensus 758 ~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 758 LNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 3899999999987776654
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0002 Score=56.07 Aligned_cols=148 Identities=12% Similarity=0.046 Sum_probs=104.4
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
.-..+.+++++++..-+..++.++..|.... .+....+. -....|-.+|.+.|..+...|+++++.|+.........
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567888998888877888888888776322 11111111 13456677788889999999999999999743222233
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh-hhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH-VQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~-v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+++. -+..-++.|+.+ ...-|..|+..|..|+...|...... -...++.+...+.|++..+|+.|..+|+.
T Consensus 134 ~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 134 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4433 255556666654 55678888999999998866543322 23678889999999999999999999975
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=57.99 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=104.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
.-..+.+++++++..-+..++.++..|....... ..-.-......|..++.+.|..+...|++++|.|+.........+
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4567888888888777777888887775432110 000011245566777788899999999999999997543333333
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh-HHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ-AFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~-~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.. +..-++.|..+ .+.-|..|+..|..|+...|......+. ..++.+-..+++++..+|+.|+.+|..
T Consensus 177 ~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 177 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4332 55566666654 5666888999999999877765444333 478889999999999999999999874
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00022 Score=56.60 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=105.5
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
.-..+.+++++++..-+..++.++..|.... .+....+ ......|..++.+.|..+...|++++|.|+.........
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566788888888777777888887777432 1111111 124556667788899999999999999999754333344
Q ss_pred hHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 107 YADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 107 ~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
+++.. +..-++.|. +..+.-|..|+..|..|+...|......+ ..+++.+...+.+++..+|+.|..+|.....
T Consensus 166 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 166 IVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 44433 444445555 45567788899999999987766443332 4577888899999999999999999986543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00031 Score=62.55 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
..+...+.++++.++-.-+.+.+.+|..+...-+.+ .....+...+...+...+..|-..|+.++|.++..-|. +
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~ 475 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---E 475 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---h
Confidence 445566777777777777778888887776432222 11234556666777778889999999999999986432 2
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+.-..+-..+.-+..+....-|.+++..+..++...+.-+ +.+.+++.+...+.||...||..++.+|..+...
T Consensus 476 ~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 2222222333334456677889999999999998755432 5678888999999999999999999999877643
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0004 Score=60.00 Aligned_cols=152 Identities=12% Similarity=0.044 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhCC-chhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 28 AFNHHIFEMVSAN-DVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 28 ~l~~~I~~L~~s~-d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.+-..+.++++++ +..-+..++.++..+..... +....+ ......|..++.+.|..+-..|+++||.++..+....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 3556677777776 66667777777776664321 111111 2355667777888899999999999999987542222
Q ss_pred hhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 105 AEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 105 ~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
..+++.. +..-++.|+.+....-|..|+..|..|+.+. |..-...+..+++.+-..+.+++..+|+.|+.+|+.+.
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 2233322 4445556665566777888999999999886 76555666888888889999999999999999988654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00046 Score=64.61 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc-
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF- 103 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~- 103 (197)
...+...+.+.+++++...|.+++.++..+.+.-..+ .......+...|...+...+..|-..|++++|+++..-+..
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc
Confidence 3445556677778889899999999999887543211 22334555666666677778889999999999999864332
Q ss_pred -hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCC--------------chhHhhhhHHHHHHHhhhcCCc---
Q psy11494 104 -SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVP--------------TIFYQHVQAFFDFVFSAVRDPK--- 165 (197)
Q Consensus 104 -~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naP--------------t~~~~~v~~~~d~Iw~aLrDpk--- 165 (197)
...+++.-+...+..|..+ ..-|.+|+..|..++...+ ..+.+|++.+++.+...+.++.
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS
T ss_pred ccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcch
Confidence 3567887788888888663 3347778888888887743 4688999999999999999873
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11494 166 PEIRLHAVKAIRAALVV 182 (197)
Q Consensus 166 ~~iRe~Aa~aL~~cL~i 182 (197)
..+|..+.+++......
T Consensus 522 ~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKN 538 (876)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57898888888765543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00033 Score=64.70 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=104.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
...+.+++++++...|.-|-+++..+.+.. +....-..|.|++-+.+.|+.+-..|-+++|.+.. ....+.+-
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~l~ 123 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITEYLC 123 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHHHH
Confidence 455777889999999999989998887643 22233446788888999999999999999998852 22333443
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
..+.+++ . +....=|-+|++.|..+....|..+-. +.+++.+-..|.|+.+.||.+|+.+|..+
T Consensus 124 ~~l~~~L---~-d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 124 EPLRKCL---K-DEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHHHHHS---S-CSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHc---C-CCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 4444444 3 567777888888889999999986633 47889999999999999999999999864
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00086 Score=59.66 Aligned_cols=150 Identities=12% Similarity=0.049 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+++...+.++++.++..-|..++.++..+.+.-+.+ .....+..+|..++...|..|-..|.+++|.++..-+. +
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~ 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---E 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---H
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---H
Confidence 344455556666666666777777777776553221 11234455555556666777777778888877764321 1
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
.....+-..+.-+-.+....-|.+|+-.|..++...+.-. +.+.+++.+-..+.|+...||++|+.+|......+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 1112222222223345666678888888888888754422 34567777888889999999999999988766543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00061 Score=61.03 Aligned_cols=150 Identities=12% Similarity=0.040 Sum_probs=108.0
Q ss_pred HHHHHHHhhCCc-hhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 30 NHHIFEMVSAND-VNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 30 ~~~I~~L~~s~d-~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
-..+.+++++++ ..-+..++.++..|.... .+....+. -....|-.+|.+.|..+-..|+++||+|+..+......
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 455777787766 666777777777776421 12111111 14556667778889999999999999998653222222
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+++. -+..-+..|..+....-+..|+..|..|+.+.|..-...+...++.+-..|.+++..+|..|..+|..+.
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3332 2556667775556677788899999999999887777778899999999999999999999999998653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=56.99 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=104.4
Q ss_pred HHHHHHHhhC-CchhHHHHHHHHHHHHhhcC-CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSA-NDVNEKKSGIIAIVCLLHVD-VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s-~d~~eklggI~aId~Li~~~-~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++ ++..-+..++.++..|.... .......+..+...|..++...|..+...|+++++.|+.........+
T Consensus 151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 230 (450)
T 2jdq_A 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV 230 (450)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4556777764 56666778888888887543 111223345566777778888999999999999999987532222223
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++. -+..-++.|. +....-|.+|+..|..|+...|...-..+ ..+++.+...+.|++..+|..|+.+|..+.
T Consensus 231 ~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 231 IDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 322 2445556665 44566788999999999988775432222 257888899999999999999999987653
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0011 Score=59.56 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=105.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcC-CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVD-VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~-~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
-..+.+++++++..-+..++.++..|.... ..............|..++...|..+...|+++++.|+.........++
T Consensus 217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 355777887777666777888888887543 1112222344566677778888999999999999999865333333344
Q ss_pred HH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 109 DF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 109 e~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+. -+..-++.|.. ....-|..|+..|..|+...|...-..+ ..+++.+...|.+++..+|+.|+.+|..+.
T Consensus 297 ~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 297 DVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp HTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 42 24555666664 4566788899999999987765433322 367888889999999999999999998653
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0069 Score=51.56 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=120.3
Q ss_pred HHHHhhhhCHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHH
Q psy11494 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYA 89 (197)
Q Consensus 10 v~~~~re~s~e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~A 89 (197)
+....++++..--.+-..++...|.++.+++|-.=.+.|+-+|..|++-. .-+.+.+.+..+-|..++.+++.-+-..|
T Consensus 57 LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v-pL~~~~y~Kl~~aL~dlik~~~~il~~ea 135 (265)
T 3b2a_A 57 LGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV-PMGSKTFLKAAKTLVSLLESPDDMMRIET 135 (265)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 34556666666666777788888999998887666678999999998543 23567799999999999999999999999
Q ss_pred HHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHH
Q psy11494 90 AKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIR 169 (197)
Q Consensus 90 A~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iR 169 (197)
|.++|++ ++ .+.+..-+..-++-+ ..++..-+-||.-.|.|+|-.+-- -.++..+|+.|=..|..+.+.++
T Consensus 136 ae~Lgkl-kv-----~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D--~~i~~~I~~eI~elL~~eD~~l~ 206 (265)
T 3b2a_A 136 IDVLSKL-QP-----LEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSAD--SGHLTLILDEIPSLLQNDNEFIV 206 (265)
T ss_dssp HHHHHHC-CB-----SCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSS--CCCGGGTTTTHHHHHTCSCHHHH
T ss_pred HHHhCcC-Cc-----ccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCC--HHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999 32 222222233444555 567777789999999999886521 02356677788888899999999
Q ss_pred HHHHHHHHHHH
Q psy11494 170 LHAVKAIRAAL 180 (197)
Q Consensus 170 e~Aa~aL~~cL 180 (197)
+-|..++-..+
T Consensus 207 e~aLd~Le~il 217 (265)
T 3b2a_A 207 ELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988876443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0046 Score=50.63 Aligned_cols=128 Identities=10% Similarity=0.052 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
...+.+++++++...+..++.++..+- + ......|..++...|..+-..|++++|++...... +.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~-----~-----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-----~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-----G-----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-----ED 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-----C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC-----C-----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-----ch
Confidence 346677777777777777666665432 1 12344455666677888888888888877543221 11
Q ss_pred HHHHHHHh-hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 110 FEMKKAIE-WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 110 ~ev~~Ale-wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.-+ ..+. ++..+....-|.+|+..|.++....|. +.+.+++.+...+.||+..||..|+.+|.
T Consensus 90 ~l~-~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 90 NVF-NILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHH-HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 111 1111 222344555566666677666644331 22344444555555666666665555554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00068 Score=60.94 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=100.6
Q ss_pred HHHHHHHHhhCC-chhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 29 FNHHIFEMVSAN-DVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 29 l~~~I~~L~~s~-d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
+-..+.++++++ +..-+..++.++..|..... +....+ ......|..+|.+.|..+...|+++||.|+..+.....
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 345677777766 66667777777776664321 111001 11233444455567999999999999999875322222
Q ss_pred hhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-CchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 106 EYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 106 ~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+++. -+..-++.|.. ....-+..|+..|..|+.+. |..-......+++.+-..|.|+...+|..|+.+|..+.
T Consensus 210 ~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 210 YVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 23332 24455556665 44455667899999999886 77667777889999999999999999999999998654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0023 Score=57.25 Aligned_cols=149 Identities=11% Similarity=0.019 Sum_probs=104.6
Q ss_pred HHHHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 31 HHIFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 31 ~~I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
..+..++ ++++..-+..++.++..|..................|..++.+.|..+...|+++++.|+.........+++
T Consensus 205 ~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 284 (528)
T 4b8j_A 205 LPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (528)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4466666 566766677778888877754322223334456677777888899999999999999998653333333443
Q ss_pred H-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Q psy11494 110 F-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDP-KPEIRLHAVKAIRAAL 180 (197)
Q Consensus 110 ~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDp-k~~iRe~Aa~aL~~cL 180 (197)
. -+..-++.|..+ .+.-+..|+..|..|+...|...-..+ ..+++.+...|.++ +..||..|+.+|..+.
T Consensus 285 ~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 285 AGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 2 245556666654 456788899999999987765443333 45778888889999 9999999999988764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0025 Score=59.33 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=100.5
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
-.+.+++.|++..+|+=|-+++..+.+-+ .....-..|.|.+-+.++++.+.-.|.+++|.+..+ -..+.+..
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~~~l~~ 145 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMCRDLAG 145 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHHHHHHH
Confidence 45677788888888888888888777543 233455777888888889999999999999999743 12233334
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.+.+++ .. .+..=|-+|++-|.-+.+..|..+ ..+++.+-..|.|+++.|+-+|..+|...
T Consensus 146 ~l~~~L---~~-~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 146 EVEKLL---KT-SNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp HHHHHH---HS-CCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHH---cC-CCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 444444 33 566677788888888999999755 46788888999999999999999888764
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0079 Score=46.70 Aligned_cols=84 Identities=24% Similarity=0.198 Sum_probs=44.3
Q ss_pred HhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 74 LRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 74 L~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
|...+...|..|-..|++++|++..+ +.++ .-++.|. +....-|.+|+..|..+.. +..
T Consensus 81 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~----~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~ 139 (201)
T 3ltj_A 81 LIKALKDEDGWVRQSAAVALGQIGDE------RAVE----PLIKALK-DEDWFVRIAAAFALGEIGD----------ERA 139 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG------GGHH----HHHHHTT-CSSHHHHHHHHHHHHHHTC----------GGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcH------HHHH----HHHHHHc-CCCHHHHHHHHHHHHHhCC----------HHH
Confidence 33444455556666666666655322 1111 1122232 3344455566666655532 244
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 154 ~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.+-..+.|++..||..|+.+|..
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5556666777777777777777764
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0042 Score=53.28 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=100.7
Q ss_pred HHHHHHHhhCC------------chhHHHHHHHHHHHHhhcCCCcchhhhHHH--HHHHhh-hCCCCChhHHHHHHHHHH
Q psy11494 30 NHHIFEMVSAN------------DVNEKKSGIIAIVCLLHVDVGNVNSRNIRF--ANYLRN-LLPSNDIGVMRYAAKTVG 94 (197)
Q Consensus 30 ~~~I~~L~~s~------------d~~eklggI~aId~Li~~~~~~~~~~~~rf--~~yL~~-~l~~~D~~vm~~AA~~lG 94 (197)
-..+...+.++ +..+|..++-.+..|++- .++.+.+.+. ..+|-. +|.+.|..+-..|++++|
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34566666665 235677777777777753 2333332221 123444 788899999999999999
Q ss_pred HhhhccCcchhhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHH
Q psy11494 95 KLAQISGTFSAEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 95 ~L~~~gG~~~~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
.++.........+++. =+..-+..|..+....-|-.|+..|.-|+++.|...-..+ ...++.+-..|++++..++..|
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9987543344445543 3555566676554556677889999999988765332222 2467777888899999999999
Q ss_pred HHHHHHHHH
Q psy11494 173 VKAIRAALV 181 (197)
Q Consensus 173 a~aL~~cL~ 181 (197)
+-||+....
T Consensus 188 ~~aLs~L~~ 196 (296)
T 1xqr_A 188 AFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0047 Score=48.39 Aligned_cols=47 Identities=17% Similarity=0.012 Sum_probs=30.1
Q ss_pred CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 122 DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 122 ~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+....-|.+|+..|..+.. +...+.+...+.|++..||..|..+|..
T Consensus 154 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3444556666666666532 4556666667777778888888777763
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.014 Score=45.61 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=25.9
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
....-|.+|+..|..+.. +..++.+...+.|++..||..|+.+|..
T Consensus 124 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333445555555555421 2344555566677777777777776653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0098 Score=46.17 Aligned_cols=116 Identities=18% Similarity=0.072 Sum_probs=77.6
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+.+++++++..-+..++.++..+-+ ......|..++...|..|-..|++++|++..+ +.+
T Consensus 80 ~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~--- 140 (201)
T 3ltj_A 80 PLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAV--- 140 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGH---
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHH---
Confidence 34555555555555555555544321 12344566677788999999999999998542 122
Q ss_pred HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 112 MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 112 v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
..-++.|. +....-|.+|+..|..+. -+...+.+...+.|+...||..|..+|..
T Consensus 141 -~~L~~~l~-d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 141 -EPLIKALK-DEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHTT-CSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHc-CCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12223343 456677888998888873 24677778888899999999999999874
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=50.55 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=97.5
Q ss_pred HHHHH-HhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 31 HHIFE-MVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 31 ~~I~~-L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
..+.. ++++++..=|..++.+|..+..-. ......+.. -...|-.+|. ..+..+.+.|+++++.+++........
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 34666 777777777777777777776321 111111111 2233444444 358899999999999998743222334
Q ss_pred hHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 107 ~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
|++.. +..-+..|+.. ...-+-.|+..|..|+...|...-..+ ..+++.+-..|+++...||+.|+.||..++..
T Consensus 163 ~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 55532 44455556654 444556788999999998765432222 35777778889999999999999999988765
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0062 Score=57.03 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=101.9
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF 110 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ 110 (197)
-.+.+++.|+|..+|+-|-+++..+.+.+ +....-..|.+++=+.++++-+.-.|-+++|.+..+ ...+.+..
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~---e~~~~l~~ 149 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSR---EMAEAFAG 149 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH---HHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCH---HHHHHHHH
Confidence 34667888999999999999988777543 233455677777778888999999999999998653 23444445
Q ss_pred HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 111 EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 111 ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
.|++++- ..+....=|-.|++-+.-+.+..|..+-. +.+++.+...|.|+++.|..+|..++..+
T Consensus 150 ~v~~~l~--~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 150 EIPKILV--AGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHHH--CSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 5555551 24555566667777777788888876643 57889999999999999999999887764
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=96.88 E-value=0.016 Score=52.41 Aligned_cols=154 Identities=8% Similarity=0.049 Sum_probs=101.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+...+.+++.+++..-+..++.+|..|.... ++....+ ......|..++.+.+..+-+.|+++++.|+.........
T Consensus 294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3466788888888777778888887776432 1111111 113345667788899999999999999998743332333
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+++. -+..-+..|.....+ -|..|+..|.-|+.....--..+ =..+++.+-..|.++...|+..+.++|...|...
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~-v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFK-TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4443 244455666655444 45667788888988754321111 1235666677889999999999999999988765
Q ss_pred h
Q psy11494 184 A 184 (197)
Q Consensus 184 ~ 184 (197)
.
T Consensus 452 ~ 452 (529)
T 3tpo_A 452 E 452 (529)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.022 Score=46.49 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHh-hhCCCCChhHHHHHHHHHHHhhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLR-NLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~-~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
.-..+.+++++++..-+..++.++..+-... + .+......|. .++...|..|-..|++++|++..
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~---~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K---CEDNVFNILNNMALNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T---THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 4456788888888877888877775543111 1 1222333343 23456778888888888888764
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0097 Score=53.85 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.+-..+..++++++..-+..+..|+..|.+.. .+....+ ......|..+|.+.|..+...|++++|.++......+.
T Consensus 251 ~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 251 QILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh-hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 34455777888888776777777777776432 1111101 11234455667788999999999999999864333333
Q ss_pred hhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 106 EYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 106 ~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
.+++.- +..-+..|.. ....-|..|+..|..|+.+.|.....-+ ..++..+-..+.++...+|..|+.||..+.
T Consensus 330 ~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344332 2333445554 4455566788999999988776443333 246677777889999999999999988643
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=96.84 E-value=0.049 Score=52.17 Aligned_cols=139 Identities=9% Similarity=0.034 Sum_probs=98.4
Q ss_pred hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 38 SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 38 ~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
.+++-.++-+++.||.++.+.-..+....+.+.-..|-. ++.+++.|...+.+++|+++.--+. ..+++..-+..-++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l~~ 536 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLVLH 536 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 566778899999999999865322222334444444332 3445788889999999999864211 12566666677777
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHH
Q psy11494 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD--PKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 118 wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~ 181 (197)
.|+. . .=+.+|+..|..+++..+..+.+|++.+++.+...+.. .+...|+...+|+...+.
T Consensus 537 ~l~~--~-~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 537 ALGN--P-ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HTTC--G-GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HhCC--c-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 7754 2 33456777888999999999999999999999998885 456788888887776553
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.026 Score=52.44 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~ 99 (197)
...+...|..++++++..=|+.++.|+..+..... + .+..|...+..++...|+.|+..|..+++.++..
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-E---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-G---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-H---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 44556778888888999999999999999987542 2 2446777788888888888888888888877643
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=96.69 E-value=0.017 Score=52.19 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=101.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH--HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI--RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~--rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+...+.+++.+++..-+..++.+|..|.... ++....+. .....|..++.+.+..+-+.|+++++.|+.........
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 3466888888888877888888887776432 11111111 12334556677889999999999999998653333333
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh--hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH--VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~--v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+++. -+..-++.|.....+ -|..|+..|.-|+.+...--..+ =...++.+-..|.++...|+..+.++|...|+.-
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~-v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFK-TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3332 245566777665444 45667788888988754322222 1345666677889999999999999999988765
Q ss_pred hh
Q psy11494 184 AQ 185 (197)
Q Consensus 184 ~~ 185 (197)
.+
T Consensus 433 ~~ 434 (510)
T 3ul1_B 433 EK 434 (510)
T ss_dssp HT
T ss_pred Hh
Confidence 43
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0078 Score=54.40 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=97.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+-..+..++++++..-+..+..|+..|.+.. .+....+ ......|..++.+.+..+...|++++|.++......+..
T Consensus 233 ~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 4455677778888777777777777776432 1111101 113344556677889999999999999998643333333
Q ss_pred hHHHHH-HHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 107 YADFEM-KKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 107 ~Ve~ev-~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+++.-+ ..-+.+|. +....-|..|+..|..|+.+.|.....-+ ..++..+-..+++++..+|..|+.||..+.
T Consensus 312 i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 312 VIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333221 11123333 34556677889999999988776433322 356777788889999999999999998643
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=96.64 E-value=0.067 Score=49.20 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc-hh
Q psy11494 27 DAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF-SA 105 (197)
Q Consensus 27 ~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~-~~ 105 (197)
..+...+..+++++++.=|+.++.|+..+.... .+... -..|...|..+|...|+.|...|+.++++++...+.. .-
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~-~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVE-DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHH-HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcc-cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 344556888888889888999999999998754 23111 1368889999999999999999999999998864321 11
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++...-+.+-+..|.. ..-++-+.+|+-|+.-.|.- -.....+++.+-..++|++..|+-.|+.++..+
T Consensus 198 ~l~~~~~~~Ll~~l~~----~~~~~q~~il~~l~~l~~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 198 DLNPQNINKLLTALNE----CTEWGQIFILDCLSNYNPKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCHHHHHHHHHHHHHH----CCHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHcCCC----CCchHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2211222222222221 11234466777776666642 134567888888899999999999998887654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.042 Score=52.94 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=93.9
Q ss_pred CchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC--CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS--NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~--~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
++-.++-+++.|+.++.+.-..+....+..+-+.+ ..++. .++.|-..|.+++|+++.-=+. ..++.+.-+..-+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVR 553 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 56678999999999987543222223345555533 33453 3788889999999999874221 12566666666666
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHH
Q psy11494 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDP--KPEIRLHAVKAIRAALV 181 (197)
Q Consensus 118 wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDp--k~~iRe~Aa~aL~~cL~ 181 (197)
.|. .. =+-+|+..+..|++..+..+.+|++.+++.+...+..+ +...++...+|+.....
T Consensus 554 ~l~---~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 554 GLN---SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHH---SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HhC---hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 662 22 35667777889999999999999999999999999984 57888888887776654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.052 Score=52.56 Aligned_cols=141 Identities=12% Similarity=0.017 Sum_probs=94.9
Q ss_pred CCchhHHHHHHHHHHHHhhcC-----CCcch-h--hhHHH-HHHHhhhCCCC---ChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 39 ANDVNEKKSGIIAIVCLLHVD-----VGNVN-S--RNIRF-ANYLRNLLPSN---DIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 39 s~d~~eklggI~aId~Li~~~-----~~~~~-~--~~~rf-~~yL~~~l~~~---D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+++-..|-+++.|+.++.+.. +.... . .+..| .+++...+... .+-|-..|.+++|+++.. +..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ---LTKA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh---CCHH
Confidence 566678899999999997531 11100 0 23332 34444444444 677888999999999874 4567
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-----------CCchhHhhhhHHHHHHHhhhcCC-----cHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-----------VPTIFYQHVQAFFDFVFSAVRDP-----KPEIRL 170 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-----------aPt~~~~~v~~~~d~Iw~aLrDp-----k~~iRe 170 (197)
+.+.-+...+..|..+. -.=|.+|+.-|..++.+ .+..+-+|++.+++.+...+... +....+
T Consensus 493 ~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 QLIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp HHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred HHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 77777777778887542 22367888888998875 35678999999999999998874 223446
Q ss_pred HHHHHHHHHHHHH
Q psy11494 171 HAVKAIRAALVVT 183 (197)
Q Consensus 171 ~Aa~aL~~cL~ii 183 (197)
.+.+|+..+....
T Consensus 572 ~l~~al~~vv~~~ 584 (960)
T 1wa5_C 572 FLMRSIFRVLQTS 584 (960)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777776665543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.044 Score=48.17 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=87.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++++..-+..++.++..|...+. +....+ ......|-.++.+.+.++...++.+++.|+.........+
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i 181 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3457777888877667777777777764431 111111 2234455566677889999999999999986211122223
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
++.. +..-++.|+....+.++.+++-+|..|+.+...--...-...++.+-..+.|++..+++.|+.+|..
T Consensus 182 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3322 4444556666667888889999998888643211111112445555555666666666666555543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.04 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=77.8
Q ss_pred HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcC-CCcchhhHHHHHHHHHHHhhCCchh
Q psy11494 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGG-DRVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 69 rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~-~r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.+...|-.++.+.|.++...|++++++|+..+......+++.. ++.-++.|.. +..+.-+..|+..|.-|+.+.|..=
T Consensus 266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~ 345 (529)
T 1jdh_A 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHH
Confidence 4455666777889999999999999999875322333344432 4555666654 2335678899999999998877521
Q ss_pred ----HhhhhHHHHHHHhhhcCCc-HHHHHHHHHHHHHHH
Q psy11494 147 ----YQHVQAFFDFVFSAVRDPK-PEIRLHAVKAIRAAL 180 (197)
Q Consensus 147 ----~~~v~~~~d~Iw~aLrDpk-~~iRe~Aa~aL~~cL 180 (197)
...-...++.+-..|++++ ..+|..|+.+|+.+.
T Consensus 346 ~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1111245677888899997 599999998887654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.085 Score=46.99 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=73.6
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
.+..+++++|...+..+..+|..|..-+ .+....+.. ....|-.+|.+.|..+...|+++|+.|+.........+++
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4667888888888999999988876321 121112222 3345566677889999999999999998742222233434
Q ss_pred HH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhh
Q psy11494 110 FE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 110 ~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~n 141 (197)
.- |..-++.|.......-+.-|+..|..|+.+
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 22 666677787445556667788999999988
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.045 Score=45.44 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=77.8
Q ss_pred hhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch
Q psy11494 66 RNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI 145 (197)
Q Consensus 66 ~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~ 145 (197)
.+....-.+..-..-+|++.-..-+-+||++++.-..+..+.++ =+-.+-+++++..|++|.-++-.|..|.|-
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-----di~smltskd~~Dkl~aLnFi~alGen~~~- 177 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-----DFMSMLSSKNREDKLTALNFIEAMGENSFK- 177 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-----HHHHHTSCSSHHHHHHHHHHHHTCCTTTHH-
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-----HHHHHhcCCChHHHHHHHHHHHHHhccCcc-
Confidence 34444444444455568888888888888888764445555542 233444578899999999999999999875
Q ss_pred hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 146 FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 146 ~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
|+..|++.++..|.|....||-.|+++|-..
T Consensus 178 ---yv~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 178 ---YVNPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp ---HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred ---ccCcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 5566677888999999999999999998643
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.09 Score=48.48 Aligned_cols=149 Identities=11% Similarity=-0.015 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++++..-+.-++.+|..|.... .+....+ ......|..+|.+.+.++-..|+.+++.|+.........+
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 456778888888777888888888876543 1211111 2244556666777788888888899999986322222233
Q ss_pred HHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 108 ADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 108 Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++.. +..-++.|+....+..+.+++-+|+.|+.+...--...-...++.+-..+.+++..+|+.++.+|+.+
T Consensus 179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3322 44555666666667778888888888886433211111112444455555555555555555555443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.077 Score=45.19 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=94.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
++..+...+-++|..+++.|+-.|...++-...+.-..+=-+-.|+.--+-.++..|...+-.++..++..-+.....+.
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 45667777778899889988888877765432111111111222332223367888888888888776543211222244
Q ss_pred HHHHHHH----HhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhh------------------------------HH
Q psy11494 109 DFEMKKA----IEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQ------------------------------AF 153 (197)
Q Consensus 109 e~ev~~A----lewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~------------------------------~~ 153 (197)
++|...- +|=| ++.++.=|-++--+|+.|..- .|+.+++++- ..
T Consensus 127 ~~ea~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~ 205 (266)
T 2of3_A 127 QEEVSAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKS 205 (266)
T ss_dssp HHHHHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred HHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4443333 3334 556666677777788888775 5555666631 34
Q ss_pred H---HHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 154 F---DFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 154 ~---d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+ ..|=..+-||+..||++|..++-.|..++
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 4 66777788888888888888888777665
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.062 Score=53.45 Aligned_cols=139 Identities=8% Similarity=0.037 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhcCCCcchhhhHHH---HHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC
Q psy11494 46 KSGIIAIVCLLHVDVGNVNSRNIRF---ANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD 122 (197)
Q Consensus 46 lggI~aId~Li~~~~~~~~~~~~rf---~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~ 122 (197)
-|+..+|..|....+..... -.-| ...+-.....++..|-..|..+.--++. .+..+-+-.-+..-++.|...
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~ 145 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVN---AVNPVAIKALLPHLTNAIVET 145 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHH---HSCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhccc
Confidence 67788888887554322111 1112 2222223334556655555545555544 344555566677778888877
Q ss_pred CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhcch
Q psy11494 123 RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQRES 188 (197)
Q Consensus 123 r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~Re~ 188 (197)
.++.-|.+|.-+|..|+..+|..+-..++.++..+=.+++|-|..|-.+|.+++..|-.++..+|=
T Consensus 146 ~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 146 NKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 789999999999999999999999999999999999999999999999999999999999988874
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.081 Score=48.80 Aligned_cols=112 Identities=17% Similarity=0.111 Sum_probs=77.4
Q ss_pred HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcCC-CcchhhHHHHHHHHHHHhhCCchh
Q psy11494 69 RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGGD-RVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 69 rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~~-r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.....|-.++.+.|.++...|+++++.|+..+......+++.. ++.-++.|... ..+.-+..|+..|..|+.+.|..-
T Consensus 263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 342 (644)
T 2z6h_A 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342 (644)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence 4555666677889999999999999999875322223333322 55555666542 235778899999999987766422
Q ss_pred Hhh----hhHHHHHHHhhhcCCc-HHHHHHHHHHHHHHH
Q psy11494 147 YQH----VQAFFDFVFSAVRDPK-PEIRLHAVKAIRAAL 180 (197)
Q Consensus 147 ~~~----v~~~~d~Iw~aLrDpk-~~iRe~Aa~aL~~cL 180 (197)
..+ -...++.+-..|++++ ..||+.|+.+|+.+.
T Consensus 343 ~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa 381 (644)
T 2z6h_A 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 381 (644)
T ss_dssp HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHc
Confidence 111 1346777888899886 699999999888643
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0043 Score=45.80 Aligned_cols=122 Identities=13% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF 103 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~ 103 (197)
.+.......+.++++++|..-|..++.++.. ++ +.. ...|..++...|..|-..|++++|++..+
T Consensus 8 ~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~---~~--~~~------~~~L~~~L~d~~~~vR~~A~~aL~~~~~~---- 72 (131)
T 1te4_A 8 HHHSSGLVPRGSHMADENKWVRRDVSTALSR---MG--DEA------FEPLLESLSNEDWRIRGAAAWIIGNFQDE---- 72 (131)
T ss_dssp -------------CCSSCCCSSSSCCSSTTS---CS--STT------HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----
T ss_pred ccccccHHHHHHHhcCCCHHHHHHHHHHHHH---hC--chH------HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----
Confidence 3445556678888888887667766655532 22 211 25566777789999999999999988532
Q ss_pred hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
+.+ ..-++.|. +....=|.+|+..|-.+.. +...+.+...+.|+...||..|+.||.
T Consensus 73 --~a~----~~L~~~L~-d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 --RAV----EPLIKLLE-DDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHH----HHHHHHHH-HCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHH----HHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122 22233333 3455567788888877652 456777888899999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.42 Score=40.60 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhc-CCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcch
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHV-DVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFS 104 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~-~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~ 104 (197)
.++...-+.+|++..|..=|..++.+|..++.- +.......+.++-.-+-+++.++|..+...|.+|+|.|.. |..++
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe-~vpL~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK-DVPMG 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT-TCCBC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc-CCCCC
Confidence 344667899999999988899999999999954 2222344455555555566778999999999999999964 56777
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
.+-... +-.|+--+-.++++..+.=|+=+|--| -|+..++.+ .+.|...+..++..+-.+|.. +.+.+-.
T Consensus 110 ~~~y~K-l~~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V---~~~l~sLl~Skd~~vK~agl~---~L~eia~ 179 (265)
T 3b2a_A 110 SKTFLK-AAKTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLV---RTYINELVVSPDLYTKVAGFC---LFLNMLN 179 (265)
T ss_dssp HHHHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHH---HHHHHHHHTCSSHHHHHHHHH---HHHHHGG
T ss_pred HHHHHH-HHHHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHH---HHHHHHHHhCCChhHHHHHHH---HHHHhhc
Confidence 664444 445666666678888777777666666 566655554 445566667788777766554 4455555
Q ss_pred hcc
Q psy11494 185 QRE 187 (197)
Q Consensus 185 ~Re 187 (197)
.++
T Consensus 180 ~S~ 182 (265)
T 3b2a_A 180 SSA 182 (265)
T ss_dssp GCS
T ss_pred ccC
Confidence 443
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.19 Score=49.00 Aligned_cols=154 Identities=17% Similarity=0.107 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 23 TAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 23 ~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
..|-+.+...|...+.+++..+++.++-|+-++.....+-.+.-+ .-+..-|-.++.+.|..+-+.|.+++|+.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~- 320 (810)
T 3now_A 242 ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK- 320 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-
Confidence 345555556667788899999999999999999866533322222 13555666677788999999999999997653
Q ss_pred CcchhhhHH-HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh---CCc-hhH--hhhhHHHHHHHhhhcCC--cHHHHHH
Q psy11494 101 GTFSAEYAD-FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT---VPT-IFY--QHVQAFFDFVFSAVRDP--KPEIRLH 171 (197)
Q Consensus 101 G~~~~~~Ve-~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n---aPt-~~~--~~v~~~~d~Iw~aLrDp--k~~iRe~ 171 (197)
....++|- .-+ ..|..|-.+..+.-|.-|++.|.-++.. -|+ -.+ .-+..+.+.+-..|.+| +..+|+.
T Consensus 321 -~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~ 398 (810)
T 3now_A 321 -KDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW 398 (810)
T ss_dssp -HHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHH
T ss_pred -cHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44555443 334 2222222344455566777788888742 122 233 22556666666777777 7889999
Q ss_pred HHHHHHHH
Q psy11494 172 AVKAIRAA 179 (197)
Q Consensus 172 Aa~aL~~c 179 (197)
|+++|.++
T Consensus 399 AveaLayL 406 (810)
T 3now_A 399 AADGLAYL 406 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.076 Score=50.08 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=83.4
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH---HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh-hH
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR---FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE-YA 108 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r---f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~-~V 108 (197)
+.+.++|+|.++|.++..||..|+. + ......+-+ ....|..+|...|.+|...|+++|+.|+..+|.-..+ ++
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-D-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-C-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 4456789999999999999999984 2 111111111 2344677788899999999999999999998864333 33
Q ss_pred HHHHHHHH--------hhhcC-------CCcchhhHH------HHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCC--
Q psy11494 109 DFEMKKAI--------EWLGG-------DRVEGKRHA------AVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDP-- 164 (197)
Q Consensus 109 e~ev~~Al--------ewL~~-------~r~e~rR~A------AvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDp-- 164 (197)
...|=..| +-+.. ...+.+++- .+-.|.-|+..+...+.... ...+..+...|.+.
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 33222222 11111 111222221 33455667776665442221 23344444444332
Q ss_pred -cHHHHHHHHHHHHH
Q psy11494 165 -KPEIRLHAVKAIRA 178 (197)
Q Consensus 165 -k~~iRe~Aa~aL~~ 178 (197)
...|+.+|+.+|..
T Consensus 197 ~~~~v~~~a~~~L~~ 211 (684)
T 4gmo_A 197 APQDIYEEAISCLTT 211 (684)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 35688888887764
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.34 Score=42.22 Aligned_cols=150 Identities=7% Similarity=-0.058 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhh-CCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNL-LPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~-l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
-..+.+++++++..-+..++-|+..|-..+..+....+.. -...|-.+ +.+.|.++.+.|+.+++.|+......-..
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~ 208 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH
Confidence 4556677777776667677777766653221121222211 12233333 45678999999999999998743122234
Q ss_pred hHH--HHHHHHHhhhcCCCcc---hhhHHHHHHHHHHHhh---CCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 107 YAD--FEMKKAIEWLGGDRVE---GKRHAAVLVLKELAVT---VPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 107 ~Ve--~ev~~AlewL~~~r~e---~rR~AAvLvLrELa~n---aPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
++. .-+..-++-|...... .-+-.|+..|+-|+.. .|...-.-+ ...+..+-..|++++..+++.|+.+|.
T Consensus 209 i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 442 2344444555543322 2466788899999862 333221111 235677778889999999999999998
Q ss_pred HH
Q psy11494 178 AA 179 (197)
Q Consensus 178 ~c 179 (197)
.+
T Consensus 289 nL 290 (354)
T 3nmw_A 289 NL 290 (354)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.15 Score=42.16 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCCc--chhhhHHHHH-----HHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVGN--VNSRNIRFAN-----YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~~--~~~~~~rf~~-----yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
+-..+.-+...=...|+.++..++..-+.. .......++. .+.+++..+...+...|-.++=.++...+. .
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~ 137 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--I 137 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--S
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--H
Confidence 334444555555667888888887653222 1222222222 223455666677777777777666543221 2
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhC-Cchh--HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTV-PTIF--YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~na-Pt~~--~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
+.+-.. .+..+ ..++..-|.+++..|.++..+- +..+ -+.++.+++.+...+-|++..||++|..++-.+...
T Consensus 138 ~~~~e~---l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 138 TQSVEL---VIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHH---HGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH---HHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 222222 22333 3467777888888888888873 3333 234677888899999999999999999999887766
Q ss_pred Hh
Q psy11494 183 TA 184 (197)
Q Consensus 183 i~ 184 (197)
+-
T Consensus 214 ~G 215 (278)
T 4ffb_C 214 TG 215 (278)
T ss_dssp --
T ss_pred hC
Confidence 53
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.39 Score=45.77 Aligned_cols=144 Identities=9% Similarity=0.083 Sum_probs=97.6
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh---HHHHHHHhhhCC-CCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN---IRFANYLRNLLP-SNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~---~rf~~yL~~~l~-~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
-..+..+++++|..-|..++.+|..|...+ +....+ ......|-.+|. +.|..+-..|+++|++|+..... ..
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~ 228 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LL 228 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSH--HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCC--hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HH
Confidence 455777788888888888888888876432 111111 123444444444 45999999999999998875221 22
Q ss_pred hhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 106 EYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 106 ~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
.+++. -|..-++.|+.+ .+.-|..|+..|..|+...+..--..+ ...++.+-..|.+++..+|+.|+.+|.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 23332 355556666654 566788999999999998766443332 467778888889999999999888876
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.54 Score=43.81 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCCchh----------HHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-------
Q psy11494 18 TVEEVTAFTDAFNHHIFEMVSANDVN----------EKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS------- 80 (197)
Q Consensus 18 s~e~~~~~~~~l~~~I~~L~~s~d~~----------eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~------- 80 (197)
.++.|..+...+.+.+..++.+++.. +-.+=+..|+.|-.+...+.......+..+|..+++.
T Consensus 218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKS 297 (621)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccc
Confidence 34445556666666777776554321 3466677777776554333333344566666666521
Q ss_pred -----C--ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHH
Q psy11494 81 -----N--DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAF 153 (197)
Q Consensus 81 -----~--D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~ 153 (197)
. ...|+-.|++++-++.. ..+++..-++.-...|. +...+-||.|+-.|..++...|+ ...+...
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~--~~~~~~~ 369 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQ-HRETNLRYLALESMCTLASSEFS--HEAVKTH 369 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTT--HHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 1 33777788888877641 34555555555555554 45668899999999999999884 2334555
Q ss_pred HHHHHhhhc-CCcHHHHHHHHHHHHH
Q psy11494 154 FDFVFSAVR-DPKPEIRLHAVKAIRA 178 (197)
Q Consensus 154 ~d~Iw~aLr-Dpk~~iRe~Aa~aL~~ 178 (197)
.+.|...|+ |+...||..|.+.|..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 666677788 9999999998887653
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.78 Score=40.39 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
.++-.+..++.|+|...|+=+-+++..+.+.. .+ ..=-.|.|.+=+.++++-+--.|=+++|++..+. ..+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~~ 139 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQA 139 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHHH
Confidence 45556677999999999999999998887662 33 2234556666667777888888999999998753 5777
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
++..+++|+. ++...=|=+|++-.--|...+|.++. .|++.+-.++.|+.+.|--.|..+|..+
T Consensus 140 l~~~lk~~L~----d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 140 IERYMKQAIV----DKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHHHHHHHHT----CSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 8888998883 45555555666666678888898764 4677777788999998887666666543
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.85 E-value=1.3 Score=36.38 Aligned_cols=144 Identities=9% Similarity=0.054 Sum_probs=92.9
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHhhcCCC-----cchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc--hh
Q psy11494 33 IFEMVSANDVNEKKSGIIAIVCLLHVDVG-----NVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF--SA 105 (197)
Q Consensus 33 I~~L~~s~d~~eklggI~aId~Li~~~~~-----~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~--~~ 105 (197)
+.+-+.|.+=.+|+-|+..+..+++-... +....+..+...+++.+...+..|...|..++..++...|.- ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34567788888999999999888754211 112224445566778887788999999999999998764432 12
Q ss_pred h----hHHHHHHHHHhh-hcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 106 E----YADFEMKKAIEW-LGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 106 ~----~Ve~ev~~Alew-L~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
. ++..-+..-+|= |. +.+..-|-+|.-.|-.++.... ....+++.|..++.++.+.+|..+...|..|+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2 333333333432 33 3333344455555555554422 12456788889999999999999999999988
Q ss_pred HH
Q psy11494 181 VV 182 (197)
Q Consensus 181 ~i 182 (197)
.-
T Consensus 168 ~~ 169 (278)
T 4ffb_C 168 AA 169 (278)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.084 Score=50.30 Aligned_cols=135 Identities=12% Similarity=0.144 Sum_probs=89.3
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCC-----cchhhhHHHHHHHhhhC------C-CCC---hhHHHHHHHHH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVG-----NVNSRNIRFANYLRNLL------P-SND---IGVMRYAAKTV 93 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~-----~~~~~~~rf~~yL~~~l------~-~~D---~~vm~~AA~~l 93 (197)
++..+..-+=++.=..|=|+.+|+..++...+. +..++ -++--|-.++ . ..| .+|-+.||++|
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 444444445566667788999999999876531 11221 2222222221 1 134 56789999999
Q ss_pred HHhhhc-cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHH
Q psy11494 94 GKLAQI-SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHA 172 (197)
Q Consensus 94 G~L~~~-gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~A 172 (197)
|.+ .+ ++. -+.+..-+ .- .....+.-||+|.|-||.+ .-+...++.+++.+-.+|.|+..-||..|
T Consensus 253 GaL-~hLp~e--~~IL~qLV----~~-l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 253 SRI-YPLIGP--NDIIEQLV----GF-LDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHH-TTTSCS--CCHHHHHT----TG-GGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHH-HhCChh--HHHHHHHH----hh-cCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 999 54 332 23333333 22 2456789999999999999 33333389999999999999999999999
Q ss_pred HHHHHH
Q psy11494 173 VKAIRA 178 (197)
Q Consensus 173 a~aL~~ 178 (197)
|++|--
T Consensus 320 AetLiP 325 (800)
T 3oc3_A 320 AELLCH 325 (800)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 998853
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.52 Score=44.90 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
-..+.+++++++..-+..++.++..|..... +....+ ......|-.+|.+++..+...|+.++..|+.........+
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3457777777777667777777777764431 211111 1233355566667889999999999998885211111122
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhh
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~n 141 (197)
++. -+..-++.|+....+.++.+++.+|..|+..
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 221 1334445566666677788888888888753
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.05 Score=54.13 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=80.8
Q ss_pred HHHHHHHhhhCCCCC-hhHHHHHHHHHHHhhhccCc--chhhhHHHHHHHHHh--hhc-----CCCcchhhHHHHHHHHH
Q psy11494 68 IRFANYLRNLLPSND-IGVMRYAAKTVGKLAQISGT--FSAEYADFEMKKAIE--WLG-----GDRVEGKRHAAVLVLKE 137 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D-~~vm~~AA~~lG~L~~~gG~--~~~~~Ve~ev~~Ale--wL~-----~~r~e~rR~AAvLvLrE 137 (197)
.+.-+.+-.+|..+. .+|=+.||.||+-|++.+|. ...++++.-.+++.. -+. ......+||||||-|-.
T Consensus 842 ~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~A 921 (997)
T 1vsy_5 842 NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGA 921 (997)
T ss_dssp HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Confidence 456666667777778 88999999999999887523 223444422222111 000 01123699999999999
Q ss_pred HHhhCCchh--HhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 138 LAVTVPTIF--YQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 138 La~naPt~~--~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+....|..+ =+++|+++..+=....||.+ |+.++-++|+.
T Consensus 922 lV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlse 963 (997)
T 1vsy_5 922 IISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISE 963 (997)
T ss_dssp HHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHH
T ss_pred HHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHH
Confidence 999999998 78999999999888999866 99999999886
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.64 Score=45.27 Aligned_cols=148 Identities=14% Similarity=0.051 Sum_probs=105.3
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhH-HHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc------c
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNI-RFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT------F 103 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~-rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~------~ 103 (197)
..+..|++|++...+..++.++...-+- .+....+. -....|..++++.|..+-..|+.+|.+++..+++ +
T Consensus 293 ~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 293 QMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 4577888888888888888887664322 12222222 2348888899988888999999999999875542 2
Q ss_pred hhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 104 SAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 104 ~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
...-++.-++....||..+. ...-|--||.-|.+|+...+.--.-.. ..++..+...|++++..+...|+.+|..+-
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 22346777889999998762 444566788888999887654332222 467777888888889999999998888653
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=1.1 Score=40.64 Aligned_cols=150 Identities=7% Similarity=-0.049 Sum_probs=86.6
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhh-CCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNL-LPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~-l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
..+.+++++++..-+.-++.||..|-..+..+....+.. -...|-.+ +.+.|..+.+.|+.+++.|+..+......+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 445566666665555555555555532111111122211 12233443 566799999999999999998432223444
Q ss_pred HH--HHHHHHHhhhcCCCcc---hhhHHHHHHHHHHHh---hCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 108 AD--FEMKKAIEWLGGDRVE---GKRHAAVLVLKELAV---TVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 108 Ve--~ev~~AlewL~~~r~e---~rR~AAvLvLrELa~---naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+. .-+..-++-|...... .-+-.|+.+|+-|+. ..|...-..+ ...+..+-..|++++..+++.|+.||..
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 42 2233444555543322 246668889999987 2333211111 2456677788999999999999999986
Q ss_pred HH
Q psy11494 179 AL 180 (197)
Q Consensus 179 cL 180 (197)
+-
T Consensus 406 La 407 (458)
T 3nmz_A 406 LS 407 (458)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=94.06 E-value=1.8 Score=42.25 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhC--CchhHHHHHHHHHHHHhhcCCCcch-hhhHHHHHHHhhhCC---CCChhHHH--HHHHHHHHhhhc
Q psy11494 28 AFNHHIFEMVSA--NDVNEKKSGIIAIVCLLHVDVGNVN-SRNIRFANYLRNLLP---SNDIGVMR--YAAKTVGKLAQI 99 (197)
Q Consensus 28 ~l~~~I~~L~~s--~d~~eklggI~aId~Li~~~~~~~~-~~~~rf~~yL~~~l~---~~D~~vm~--~AA~~lG~L~~~ 99 (197)
.+.+.+.+.+++ .+-.++=+++.|+.++.+.-.++.. ......-.+|-.+.. ++|...+. .+.+++|+.+.-
T Consensus 451 ~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~ 530 (1049)
T 3m1i_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1049)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Confidence 344445555543 5557788999999988754222211 113334444443222 13444444 377999988753
Q ss_pred cCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH--------hhhhHHHHHHHhhhcCCcHHHHHH
Q psy11494 100 SGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY--------QHVQAFFDFVFSAVRDPKPEIRLH 171 (197)
Q Consensus 100 gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~--------~~v~~~~d~Iw~aLrDpk~~iRe~ 171 (197)
=.. ..+++..-+..-++.|..+. ..=+.+|+.-|.-+++..+..+. +|++.+++.+...+.+.+..-...
T Consensus 531 ~~~-~~~~l~~vl~~ll~~l~~~~-~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 531 LKA-HWNFLRTVILKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHH-CHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 111 24577777777777776543 34456677777789999888776 999999999998888866554444
Q ss_pred HHHHHH
Q psy11494 172 AVKAIR 177 (197)
Q Consensus 172 Aa~aL~ 177 (197)
.-+|+.
T Consensus 609 ~~eai~ 614 (1049)
T 3m1i_C 609 FYKACG 614 (1049)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.54 Score=45.43 Aligned_cols=131 Identities=11% Similarity=0.012 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCC------CCChhHHHHHHHHHHHhhhccC----cchh-----hhHH
Q psy11494 45 KKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLP------SNDIGVMRYAAKTVGKLAQISG----TFSA-----EYAD 109 (197)
Q Consensus 45 klggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~------~~D~~vm~~AA~~lG~L~~~gG----~~~~-----~~Ve 109 (197)
+.+|...++.|....+.. -+.-+..++...+. +.|...-+.|=.++|-++..|. .... ++..
T Consensus 378 R~aa~~~L~~l~~~~~~~---v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 378 RRACTDFLKELKEKNEVL---VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp HHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred HHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 567777888777654322 23344455544443 5677888888899999975432 1122 6666
Q ss_pred HHHHHHHhhhcCC--CcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGD--RVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 110 ~ev~~AlewL~~~--r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
+-++..+-.|+.. ....-|.+|+..|-.++..-| -.+...++..+...|.|+...||..|+.||...+.
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 6556666666643 255569999999999988753 24688888899999999999999999999996543
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.54 Score=39.04 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF 103 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~ 103 (197)
+....+...|+.|..|+|..||+.++.=|..+ +.+....++=|..-|..+|-..|.-|-..|-++||++|.....+
T Consensus 140 ~l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 140 MLMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 34556777899999999999998876655433 22334445557777778888889888888999999999864333
Q ss_pred -------------hhhhHHHHHHHHHhhh
Q psy11494 104 -------------SAEYADFEMKKAIEWL 119 (197)
Q Consensus 104 -------------~~~~Ve~ev~~AlewL 119 (197)
+++.|.+-|+.++.-|
T Consensus 216 Rkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 216 RKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 6788888888887654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.014 Score=42.94 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH
Q psy11494 68 IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~ 147 (197)
..+...|...|.+.|..+-..|++++|++..+ . +..-++.|.. ....-|.+|+..|-.+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~-------~~~L~~~L~d-~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----A-------FEPLLESLSN-EDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----T-------HHHHHHGGGC-SCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H-------HHHHHHHHcC-CCHHHHHHHHHHHHhcCC-------
Confidence 34566677788888999999999999976432 1 2334455654 556667777777665542
Q ss_pred hhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 148 QHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 148 ~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
+..++.+...|.|++..||..|+.+|...
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34567777888999999999999999753
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.39 Score=46.68 Aligned_cols=138 Identities=15% Similarity=0.268 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhcCCC---cchhhhHH---HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH------
Q psy11494 44 EKKSGIIAIVCLLHVDVG---NVNSRNIR---FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE------ 111 (197)
Q Consensus 44 eklggI~aId~Li~~~~~---~~~~~~~r---f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e------ 111 (197)
+++-++.|+--|...+.. +...++.+ .-..|..+|-+.+..+-+.|++++..|+..+.....+|.+.+
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 488888888888776521 22233333 567777888888888999999999999986544445665433
Q ss_pred -HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh--hHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHH
Q psy11494 112 -MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV--QAFFDFVFSAVRD--PKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 112 -v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v--~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~~cL~i 182 (197)
++.-+..++.+..+. |-||+..|--++...|.+.-.-+ ...++.+-..+.| ++..+|..++.++......
T Consensus 655 rL~lLV~Ll~s~D~~~-r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 655 NFNILVKLLQLSDVES-QRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHGGGCSCHHH-HHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHH-HHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 445556666654444 55555887777766666544444 3578888888889 8999999999999877753
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.72 E-value=1.1 Score=44.54 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred HhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH
Q psy11494 36 MVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA 115 (197)
Q Consensus 36 L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A 115 (197)
|..+.|..=|.|+++++.+-. .+.++ ...+.++ |..+....+..|-+.|.-.+|.++.- .. + -+.+.
T Consensus 550 L~~~~dp~vRygaa~alglAy-aGTGn-~~aIq~L---L~~~~~d~~d~VRraAViaLGlI~~g-~~---e----~v~rl 616 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAY-AGTGN-NSAVKRL---LHVAVSDSNDDVRRAAVIALGFVLLR-DY---T----TVPRI 616 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHT-TTSCC-HHHHHHH---HHHHHHCSCHHHHHHHHHHHHHHTSS-SC---S----SHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCCC-HHHHHHH---HHHhccCCcHHHHHHHHHHHHhhccC-CH---H----HHHHH
Confidence 335677777888887775442 12223 2223333 33444455666778888999977532 11 1 24556
Q ss_pred HhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 116 IEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 116 lewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++-|.......-|++|++-|=-+.--.|. +.+++.+.....|+...||..|+.||..++
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 66666667788899999988777765664 677888889999999999999999999766
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=92.59 E-value=5.9 Score=37.02 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=95.4
Q ss_pred HHHHHhh-CCchhHHHHHHHHHHHHhhcCCC--cchh-hh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 32 HIFEMVS-ANDVNEKKSGIIAIVCLLHVDVG--NVNS-RN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 32 ~I~~L~~-s~d~~eklggI~aId~Li~~~~~--~~~~-~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.+..+++ +.+..=+-.++-||--|-..... .... .+ ..-...|..+|.++|..+.+.|+++|+.|+..+.. .
T Consensus 312 ~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~ 389 (584)
T 3l6x_A 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--K 389 (584)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--H
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--H
Confidence 3455664 43433344666666666422110 0001 11 12345567778889999999999999999986543 3
Q ss_pred hhHHH-HHHHHHhhhcCCC-------cchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCC--cHHHHHHHHH
Q psy11494 106 EYADF-EMKKAIEWLGGDR-------VEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDP--KPEIRLHAVK 174 (197)
Q Consensus 106 ~~Ve~-ev~~AlewL~~~r-------~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDp--k~~iRe~Aa~ 174 (197)
+.++. =|.+-++.|.... .+.-..+|+..|.+|+...|.-.-..+ ...++.++..+++. +..+.+.|+.
T Consensus 390 ~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 390 ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 44443 3555556665432 345577899999999876654332222 36788899999986 8999999999
Q ss_pred HHHHHHH
Q psy11494 175 AIRAALV 181 (197)
Q Consensus 175 aL~~cL~ 181 (197)
+|+....
T Consensus 470 vL~nl~~ 476 (584)
T 3l6x_A 470 VLQTIWG 476 (584)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9997763
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.32 Score=48.31 Aligned_cols=113 Identities=11% Similarity=0.144 Sum_probs=75.2
Q ss_pred HHHHHHHhh-hCCC-------CCh-hHHHH-HHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHH
Q psy11494 68 IRFANYLRN-LLPS-------NDI-GVMRY-AAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKE 137 (197)
Q Consensus 68 ~rf~~yL~~-~l~~-------~D~-~vm~~-AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrE 137 (197)
.-+..|+.. ++|. +|. ++... |..++..|+. ..+..+.++.=++...+-...+.++ .|++..-+|+-
T Consensus 751 ~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~--~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 751 VLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY--MPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp HHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS--SCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence 345555554 4541 333 67777 6677777753 3556666655444443334445788 99999888765
Q ss_pred HHh-hCCchhHhhhhHHHHHHHhhhcCCc-HHHHHHHHHHHHHHHHHH
Q psy11494 138 LAV-TVPTIFYQHVQAFFDFVFSAVRDPK-PEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 138 La~-naPt~~~~~v~~~~d~Iw~aLrDpk-~~iRe~Aa~aL~~cL~ii 183 (197)
+.- |...+--.....+++.+...|.|+. ..|||.|+.+|+..+.-.
T Consensus 828 ~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 828 FLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 543 3444444445789999999999999 999999999998665443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.44 E-value=1.9 Score=39.02 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=70.2
Q ss_pred HHhhhCCCCCh----hHHHHHHHHHHHhhhc--cCcch-hhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc
Q psy11494 73 YLRNLLPSNDI----GVMRYAAKTVGKLAQI--SGTFS-AEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144 (197)
Q Consensus 73 yL~~~l~~~D~----~vm~~AA~~lG~L~~~--gG~~~-~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt 144 (197)
.|-.+|.+.+. ++.+.|++++..|+.. |+... ..+++. -+..-++.|... ...-+-.|+..|..|+...|.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHH
Confidence 34445554332 5899999999999863 33322 223332 255556666653 444566788889999865554
Q ss_pred hhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 145 IFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 145 ~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
..-.-+ ...++.+...|++++..+|+.|+.||+..+
T Consensus 413 ~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 322222 356778888999999999999999999654
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=91.44 E-value=3.7 Score=38.40 Aligned_cols=148 Identities=13% Similarity=0.011 Sum_probs=86.1
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh-h
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE-Y 107 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~-~ 107 (197)
..+.+++.++|..-+..+..+|-.|.- ...+....+.. -...|-.+|.+.|..+-+.|+++|+.|+..-+.-..+ +
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 456778888888888888888866652 21222222222 2345666778899999999999999998731222222 3
Q ss_pred HHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc---hhHhhhhHHHHHHHhh-------------hcCC-cHHHH
Q psy11494 108 ADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT---IFYQHVQAFFDFVFSA-------------VRDP-KPEIR 169 (197)
Q Consensus 108 Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt---~~~~~v~~~~d~Iw~a-------------LrDp-k~~iR 169 (197)
++. =|..-++.|.......-+-.|+..|..|+.+.+. ++-.-++.+...+-.. ++|+ ...|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 332 2566667777543333344466777888875321 2222244444433110 2232 46788
Q ss_pred HHHHHHHHHH
Q psy11494 170 LHAVKAIRAA 179 (197)
Q Consensus 170 e~Aa~aL~~c 179 (197)
+.|+.+|+.+
T Consensus 210 ~nAa~~L~NL 219 (584)
T 3l6x_A 210 TNTAGCLRNV 219 (584)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777754
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=91.20 E-value=1.7 Score=37.79 Aligned_cols=109 Identities=9% Similarity=0.078 Sum_probs=71.3
Q ss_pred HHhhhCCCCC----hhHHHHHHHHHHHhhhc--cCcch-hhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc
Q psy11494 73 YLRNLLPSND----IGVMRYAAKTVGKLAQI--SGTFS-AEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT 144 (197)
Q Consensus 73 yL~~~l~~~D----~~vm~~AA~~lG~L~~~--gG~~~-~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt 144 (197)
.|-.+|.+.+ .++.+.|++++..|+.. ++... ..+++. -+..-++-|+. ....-+-.|+..|..|+...|.
T Consensus 218 ~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 218 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp HHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCHH
Confidence 3445555433 26899999999999862 32222 223332 35566667765 3444566788899999865544
Q ss_pred hhHhh-hhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 145 IFYQH-VQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 145 ~~~~~-v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
....- -...++.+...|++++..+|+.|+.||+.++.-
T Consensus 297 ~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 32221 235677788889999999999999999976653
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.03 E-value=1.2 Score=36.68 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=64.5
Q ss_pred HHHHHHhhCCch--hHHHHHHHHHHHHhhcCCCcchhhhHH--HHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 31 HHIFEMVSANDV--NEKKSGIIAIVCLLHVDVGNVNSRNIR--FANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 31 ~~I~~L~~s~d~--~eklggI~aId~Li~~~~~~~~~~~~r--f~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
..+.++++|+|. .-+..+..+|-.|-.-+ .+....+.. -...|-.+|.+.+.++-+.|+++|+.|+...-.-...
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 356778888887 45566666665543211 122222221 2345556677889999999999999998631111223
Q ss_pred hHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhh
Q psy11494 107 YADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVT 141 (197)
Q Consensus 107 ~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~n 141 (197)
+++. =|..-++.|...+...-+-.|+-.|..|+..
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 4443 2555667776444444455566677778754
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=89.97 E-value=11 Score=35.98 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhh-hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 24 AFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSR-NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 24 ~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~-~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
.-...+.+|+ -++.-..+|..++.++..|-.-...+.... +..+-+-|++= ..|.++++.+=++|-.+..+++.
T Consensus 21 etI~~L~~Rl---~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRV---ASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHH---HHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHH---hhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCc
Confidence 3444444444 457888899999999998853211221211 33333333332 47999999999999766655432
Q ss_pred c-----------------hhhhHH--HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh---HHHHHHHhh
Q psy11494 103 F-----------------SAEYAD--FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ---AFFDFVFSA 160 (197)
Q Consensus 103 ~-----------------~~~~Ve--~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~---~~~d~Iw~a 160 (197)
- +..|++ .-|.--++.|+ +.....|+.++-+|+-|+.+-|..+-..+- .=+..+-..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 111222 12444456664 467889999999999999999997665543 567788899
Q ss_pred hcCCcHHHHHHHHHHHHH
Q psy11494 161 VRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 161 LrDpk~~iRe~Aa~aL~~ 178 (197)
|.|++..||..|...|.+
T Consensus 175 L~d~rE~iRneallLL~~ 192 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQA 192 (651)
T ss_dssp GGCSSHHHHHHHHHHHHH
T ss_pred HhCchHHHHHHHHHHHHH
Confidence 999999999998877663
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=89.51 E-value=15 Score=34.95 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-CChhHHHHHHHHHHHhh
Q psy11494 21 EVTAFTDAFNHHIFEMVS--ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-NDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 21 ~~~~~~~~l~~~I~~L~~--s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-~D~~vm~~AA~~lG~L~ 97 (197)
.+..+...+-+.+..++. ..+....-....++..++..-+.+....+..+..++...... +...++...+..++...
T Consensus 676 ~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~ 755 (963)
T 2x19_B 676 PVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFA 755 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC
Confidence 355566666655555542 223333334455666666443333344455666555444443 56778877777776443
Q ss_pred hcc--CcchhhhHHHHHHHHHhhhcCC--CcchhhHHHHHHHHHHHhhCCchhH--hh-hhHHHHHHHhhhcCCcHHHHH
Q psy11494 98 QIS--GTFSAEYADFEMKKAIEWLGGD--RVEGKRHAAVLVLKELAVTVPTIFY--QH-VQAFFDFVFSAVRDPKPEIRL 170 (197)
Q Consensus 98 ~~g--G~~~~~~Ve~ev~~AlewL~~~--r~e~rR~AAvLvLrELa~naPt~~~--~~-v~~~~d~Iw~aLrDpk~~iRe 170 (197)
..+ +....++++.-++..++.++.+ ....-+.+..-+|..+.++.|..++ +. +..+++.+-.+++++...+-.
T Consensus 756 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 756 HEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHH
Confidence 321 1233445566677777776632 2234567888999999999998876 44 788898877789999999998
Q ss_pred HHHHHHHHHHHH
Q psy11494 171 HAVKAIRAALVV 182 (197)
Q Consensus 171 ~Aa~aL~~cL~i 182 (197)
++...+...+..
T Consensus 836 ~~l~~l~~l~~~ 847 (963)
T 2x19_B 836 ASCGFFTELLPR 847 (963)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHhc
Confidence 888888876654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=89.18 E-value=1.2 Score=39.34 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh-hhHHHH
Q psy11494 78 LPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH-VQAFFD 155 (197)
Q Consensus 78 l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~-v~~~~d 155 (197)
|.+.|.++-..|++++++|+.........+++.- |..-++.|.. ....-+..|+..|+-|+...|..-... -...++
T Consensus 11 L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp HHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 3467889999999999999864322233455432 5566667775 344557889999999998644321111 112344
Q ss_pred HHHhhhc-CCcHHHHHHHHHHHHHH
Q psy11494 156 FVFSAVR-DPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 156 ~Iw~aLr-Dpk~~iRe~Aa~aL~~c 179 (197)
.+-..|+ +++..+++.|+.+|..+
T Consensus 90 ~Lv~lL~~~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 90 EAVSLLRRTGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 4445566 77888888888777643
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=89.13 E-value=1.2 Score=44.34 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=85.6
Q ss_pred HHHHHHhhCCchhH----HHHHHHHHHHHhhc---C-CCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc
Q psy11494 31 HHIFEMVSANDVNE----KKSGIIAIVCLLHV---D-VGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT 102 (197)
Q Consensus 31 ~~I~~L~~s~d~~e----klggI~aId~Li~~---~-~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~ 102 (197)
+.+++|++++.+.. +--+++|+..|+.- + .......+..+.++|...+...|.+-+..+=++||.+..+..
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~- 472 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNS- 472 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGG-
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhH-
Confidence 45677777655321 23578999888742 1 122344578899999999988899999999999999988631
Q ss_pred chhhhHHHHHHHHHhhhcC------CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy11494 103 FSAEYADFEMKKAIEWLGG------DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 103 ~~~~~Ve~ev~~AlewL~~------~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL 176 (197)
++.....|.+ +....-|.+|+.-||.++.+-|..+...+-+++.+ ++-...||-+|...|
T Consensus 473 ---------l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-----~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 473 ---------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-----VAIKSELRIRSCIVF 538 (1056)
T ss_dssp ---------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-----TTSCHHHHHHHHHHH
T ss_pred ---------HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-----CCCChHHHHHHHHHH
Confidence 2222233322 11223467899999999876665444443333322 445777888877766
Q ss_pred HHH
Q psy11494 177 RAA 179 (197)
Q Consensus 177 ~~c 179 (197)
-.|
T Consensus 539 m~t 541 (1056)
T 1lsh_A 539 FES 541 (1056)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=88.31 E-value=5.5 Score=39.48 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=96.3
Q ss_pred CchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCC---CCChhHHH--HHHHHHHHhhhccCcchhhhHHHHHH
Q psy11494 40 NDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLP---SNDIGVMR--YAAKTVGKLAQISGTFSAEYADFEMK 113 (197)
Q Consensus 40 ~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~---~~D~~vm~--~AA~~lG~L~~~gG~~~~~~Ve~ev~ 113 (197)
++=.++=+++.|+.++.+.-..+ ....+...-.+|-.++. ++|..++. .+++++|+.+.-= ....+|.+.-++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl-~~~~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL-KAHWNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH-HHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45667779999999998653222 23445555555555543 34666543 4669999987631 113567788888
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhH--------hhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 114 KAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFY--------QHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 114 ~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~--------~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
.-++.|..+ .+.=.-+||.-++-|+..++..+. +|+++++..+-..+-+-+..-+...-+|+...+.-
T Consensus 544 ~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 888888543 233456788999999999888775 58999988888888777777777777777765544
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.27 E-value=2.6 Score=37.05 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
+...+-..+...++.=++.+++|+..|+... +..+.+|.+.+..++...|+-|+-.|-.++-.+....+.-...+|
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv 215 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMI 215 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHH
Confidence 3344555555555555666666666665433 223455666666666665655555444444444443221111122
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 109 DFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 109 e~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
....+ ..-.-=++-|.+||-+++-.|..--..-..+++.|-..|++++..|-=.|+.++-
T Consensus 216 ~~l~~---------~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 216 SKFTR---------HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp HHHHS---------SCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHT
T ss_pred HHHhc---------CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11100 0000134445566644443332211123455566666677777777766666554
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.32 E-value=14 Score=30.95 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHhhCC-----chhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHhh
Q psy11494 133 LVLKELAVTVP-----TIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTAQ 185 (197)
Q Consensus 133 LvLrELa~naP-----t~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~~ 185 (197)
++|+.++.+.+ .-....+..+=+.|..-+.....-||-.|.+.+..+..+-+.
T Consensus 120 ~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~ 177 (257)
T 3gs3_A 120 NGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSF 177 (257)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcC
Confidence 44555665544 345666777777777777777999999999999987655553
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=85.39 E-value=12 Score=35.64 Aligned_cols=109 Identities=6% Similarity=-0.028 Sum_probs=67.6
Q ss_pred hHHHHHHHhhhCCC-----CChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcC-CCcchhhHHHHHHHHHHHh
Q psy11494 67 NIRFANYLRNLLPS-----NDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGG-DRVEGKRHAAVLVLKELAV 140 (197)
Q Consensus 67 ~~rf~~yL~~~l~~-----~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~-~r~e~rR~AAvLvLrELa~ 140 (197)
+..+.+++...+.+ .|....+.|-.++|.++........+.++.-+. .+--|.. +....=|.+|+.+|-.++.
T Consensus 457 l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 34445555554432 678888999999999876433222345554444 3333332 2345568899999998887
Q ss_pred hCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 141 TVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 141 naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
--..-. .|++.+++.|..+| | ..|+..|+.|+....
T Consensus 536 ~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~ 571 (971)
T 2x1g_F 536 WLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELC 571 (971)
T ss_dssp HHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHH
T ss_pred HHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHH
Confidence 633222 67888899988888 6 467888988888544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=84.83 E-value=9.4 Score=36.55 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=88.3
Q ss_pred HhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHH
Q psy11494 36 MVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKA 115 (197)
Q Consensus 36 L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~A 115 (197)
...++.=+=+-||+++|.-|-++- . .+..+.+-+...|...|-.|-..||.+|=-++.+ +.+..-+...
T Consensus 271 ~l~~~~WEVRHGGLLGLKYL~DLL--~---~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p------~~l~~LL~iL 339 (800)
T 3oc3_A 271 FLDSGDWQVQFSGLIALGYLKEFV--E---DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPIT------DSLDLVLEKC 339 (800)
T ss_dssp GGGCSCHHHHHHHHHHHHHTGGGC--C---CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCS------STHHHHHHHH
T ss_pred hcCCCCeeehhhhHHHHHHHHHHH--H---HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcch------hhHHHHHHHH
Confidence 336666556779999999983332 2 1667777777788889999999999999877722 3345555555
Q ss_pred HhhhcC-CCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH-----HHHHHhh
Q psy11494 116 IEWLGG-DRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA-----ALVVTAQ 185 (197)
Q Consensus 116 lewL~~-~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~-----cL~ii~~ 185 (197)
-+-|.. +.--.---+-.-+|-.|....|.. ..-+.....+|.-+|++-..||.++..+|.. +|.++.|
T Consensus 340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~~~LRLIFQ 413 (800)
T 3oc3_A 340 WKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAE 413 (800)
T ss_dssp HHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555543 221111112223444454444321 1124778889999999999999999998765 4555544
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.51 E-value=4.6 Score=33.18 Aligned_cols=104 Identities=10% Similarity=0.040 Sum_probs=67.2
Q ss_pred hhhCCCCCh--hHHHHHHHHHHHhhhccCcchhhhHHH-HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCc-hhHhhh
Q psy11494 75 RNLLPSNDI--GVMRYAAKTVGKLAQISGTFSAEYADF-EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPT-IFYQHV 150 (197)
Q Consensus 75 ~~~l~~~D~--~vm~~AA~~lG~L~~~gG~~~~~~Ve~-ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt-~~~~~v 150 (197)
-..|.++|. ++-..|++++..|+.....-...+++. -|..-++.|.. ..+.-+..|+..|+-|+...|. -....-
T Consensus 14 V~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~ 92 (233)
T 3tt9_A 14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEVAE 92 (233)
T ss_dssp HHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345667777 787889999999986432223344443 36666777776 4566677888999999986542 111111
Q ss_pred hHHHHHHHhhhc-CCcHHHHHHHHHHHHHH
Q psy11494 151 QAFFDFVFSAVR-DPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 151 ~~~~d~Iw~aLr-Dpk~~iRe~Aa~aL~~c 179 (197)
..-++.+-..|+ .++..+++.|+.||..+
T Consensus 93 ~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 93 LNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 234445555666 46888999998887754
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.59 E-value=28 Score=34.80 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcC--------CCc---chhhHHHHHHHHHHHhhCCchhH
Q psy11494 79 PSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGG--------DRV---EGKRHAAVLVLKELAVTVPTIFY 147 (197)
Q Consensus 79 ~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~--------~r~---e~rR~AAvLvLrELa~naPt~~~ 147 (197)
+..|+.++..+-.++|.+..--. ...+++..-+..-+.-+.. .+. ..=|.+|+.-|+-|+..+|..+.
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45799999999999998876532 2356777777766666542 111 24567788888899999999999
Q ss_pred hhhhHHHHHHHhhhcCCc
Q psy11494 148 QHVQAFFDFVFSAVRDPK 165 (197)
Q Consensus 148 ~~v~~~~d~Iw~aLrDpk 165 (197)
+|++++...+-..+...+
T Consensus 621 p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999999999888886554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.04 E-value=37 Score=33.69 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=90.3
Q ss_pred hCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHh
Q psy11494 38 SANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIE 117 (197)
Q Consensus 38 ~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~Ale 117 (197)
+.++..=|-++++||..+ .++..+ .+.| .+..++.+.|+.+-..|+.++|.+.. |+-..+.++ .|+
T Consensus 588 ~d~~d~VRraAViaLGlI-~~g~~e---~v~r---lv~~L~~~~d~~VR~gAalALGli~a--Gn~~~~aid-----~L~ 653 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFV-LLRDYT---TVPR---IVQLLSKSHNAHVRCGTAFALGIACA--GKGLQSAID-----VLD 653 (963)
T ss_dssp HCSCHHHHHHHHHHHHHH-TSSSCS---SHHH---HTTTGGGCSCHHHHHHHHHHHHHHTS--SSCCHHHHH-----HHH
T ss_pred cCCcHHHHHHHHHHHHhh-ccCCHH---HHHH---HHHHHHhcCCHHHHHHHHHHHHHhcc--CCCcHHHHH-----HHH
Confidence 334444577888888643 333222 2333 33445568899999999999999863 333344443 455
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC--CcHHHHHHHHHHHH
Q psy11494 118 WLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD--PKPEIRLHAVKAIR 177 (197)
Q Consensus 118 wL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD--pk~~iRe~Aa~aL~ 177 (197)
-|..|....=|.+|+.-|-.+....+....+.+.+++..+-.-+.| .....|-.|.-|..
T Consensus 654 ~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 5567788888899999999999998888889999999998888866 56778888877765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 197 | ||||
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 9e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-05 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 9e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 0.003 |
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 9e-06
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 5/140 (3%)
Query: 39 ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ 98
A D + I L V + + + L + + A + KL +
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 99 ISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVF 158
F E+A + + + GD R + + L+ + V
Sbjct: 471 K---FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTVL 525
Query: 159 SAVRDPKPEIRLHAVKAIRA 178
DP +R + K+++
Sbjct: 526 RMAGDPVANVRFNVAKSLQK 545
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 8/109 (7%)
Query: 72 NYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAA 131
L + G A+ +GKL I + ++ R +
Sbjct: 931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSV 982
Query: 132 VLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180
V +K P ++ + DP +R A+ +A
Sbjct: 983 VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (80), Expect = 0.003
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 127 KRHAAVLVLKELA-VTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAI 176
R AAV+ + P+ V + ++DP +R A +
Sbjct: 381 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 197 | |||
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.2 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.19 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.07 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.59 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.51 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.42 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.33 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.22 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.2 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.15 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.1 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.07 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.06 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.55 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.39 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.37 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.08 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 95.76 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 95.37 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.33 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 94.91 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 94.55 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 93.38 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 92.99 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 85.05 | |
| d2b6ca1 | 213 | Hypothetical protein EF3068 {Enterococcus faecalis | 83.28 |
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.4e-05 Score=73.49 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhc-cCcch
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQI-SGTFS 104 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~-gG~~~ 104 (197)
...+...+.+.+++++...|-+++.|+.++.+.-.......+.....+|...+...++.|-..|++++|+++.. +....
T Consensus 393 l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~ 472 (888)
T d1qbkb_ 393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 472 (888)
T ss_dssp HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34466778888899999999999999999876432223445667778888888889999999999999999874 33444
Q ss_pred hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 105 AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 105 ~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
..|.+.-+...+.-+.... ..=+.+|+..|..++.+++..+.+|++.+++.+-.++.+++...+..+.+|+......+
T Consensus 473 ~~~~~~~l~~ll~~l~d~~-~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~ 550 (888)
T d1qbkb_ 473 DTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 550 (888)
T ss_dssp HHHTTTHHHHHHHHHSSSC-HHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 5566666666666665432 33467899999999999999999999999999999999999999988888887765443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.9e-05 Score=68.62 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
...+-..+.+++++++..-|.+++.++..+...-+.+ .....+..++..++......|-..|++++|+|+..-|.
T Consensus 400 ~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--- 474 (588)
T d1b3ua_ 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--- 474 (588)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH--hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc---
Confidence 3445556777788888788888888888887543222 12235667777788778889999999999999986443
Q ss_pred hhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 106 EYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 106 ~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
++.... +..-.+. ..+.+...|.+++..+.+++...|..++ .+.+++.++..+.||.+.||..|+.+|......+.
T Consensus 475 ~~~~~~i~~~l~~~-~~~~~~~~R~~~~~~l~~l~~~~~~~~~--~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~ 551 (588)
T d1b3ua_ 475 EWAHATIIPKVLAM-SGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHTHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHHHH--HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcChHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 333333 2333333 3566778899999999999988776443 45789999999999999999999999998765443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=7.1e-05 Score=65.89 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhh
Q psy11494 20 EEVTAFTDAFNHHIFEMVSANDV-NEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQ 98 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d~-~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~ 98 (197)
+.+..+.+.+...+..++...+. .-+-.++.+|..++..-+.+-...+..+..+|...+...+..+...|..++|.+++
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~ 668 (861)
T d2bpta1 589 SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 44555566666667777755443 33567888888888765445455566677777777777889999999999999999
Q ss_pred ccCcchhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCc-----------H
Q psy11494 99 ISGTFSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPK-----------P 166 (197)
Q Consensus 99 ~gG~~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk-----------~ 166 (197)
..|....+|++.-+..-++-|+.+. ...-|-++.-.|..++.+.+.-|.+|++++++.+-.++..+. .
T Consensus 669 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 748 (861)
T d2bpta1 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQI 748 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHH
T ss_pred HhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHH
Confidence 8888778888877777788887543 445678889999999999999999999999999888876553 2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy11494 167 EIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 167 ~iRe~Aa~aL~~cL~ii~ 184 (197)
.+|+++..++...+..+.
T Consensus 749 ~l~~~~~~~~~~i~~~~~ 766 (861)
T d2bpta1 749 KVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 478888888877655443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=0.0001 Score=60.25 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhh-CCchhHhhhhHHHHHHHhh
Q psy11494 82 DIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVT-VPTIFYQHVQAFFDFVFSA 160 (197)
Q Consensus 82 D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~n-aPt~~~~~v~~~~d~Iw~a 160 (197)
|..+-..|+.+++.++...|. ++++.-+....++|+. .....|+||+..|..++.. .+..+-++++++++.|-..
T Consensus 340 ~~~~~~~a~~~l~~l~~~~~~---~~~~~l~~~i~~~l~s-~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~ 415 (458)
T d1ibrb_ 340 DWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 415 (458)
T ss_dssp CCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred cccHHHHHHHHHHHHHHhccH---hhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 345677888888888876553 3444444444455554 4577899999999999987 4677889999999999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHh
Q psy11494 161 VRDPKPEIRLHAVKAIRAALVVTA 184 (197)
Q Consensus 161 LrDpk~~iRe~Aa~aL~~cL~ii~ 184 (197)
+.||.+.||.+|..+|......+.
T Consensus 416 l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 416 MKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988776654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.2e-05 Score=72.31 Aligned_cols=150 Identities=11% Similarity=0.093 Sum_probs=105.9
Q ss_pred HHHHHHHHhh-CCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhh
Q psy11494 29 FNHHIFEMVS-ANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEY 107 (197)
Q Consensus 29 l~~~I~~L~~-s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~ 107 (197)
+..++.+.+. ..+..-+.+++..+..++...+.........+...|...+.+.+..|-+.|..++|.++...|. +.
T Consensus 131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~~ 207 (1207)
T d1u6gc_ 131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV 207 (1207)
T ss_dssp HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---HH
Confidence 3344444443 3344445566666666665443333344455666666667778889999999999999876433 33
Q ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 108 ADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 108 Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
++.-+...++.|..+.....|..++..|-.+++..|..|.+|++.++..+...+.+....+|+.+..++.....
T Consensus 208 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~ 281 (1207)
T d1u6gc_ 208 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 281 (1207)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 33345556666765555555667788999999999999999999999999999999999999999999886554
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.9e-05 Score=71.04 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccC
Q psy11494 22 VTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISG 101 (197)
Q Consensus 22 ~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG 101 (197)
+..|.+.+-..++....+++..-|-.+..++..|.-.+. ..+...|...+.+.|..+...|..+++.++...|
T Consensus 922 ~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~ 994 (1207)
T d1u6gc_ 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 994 (1207)
T ss_dssp THHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555556666677777764442 1345666777788899999999999999998877
Q ss_pred cchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcC------------------
Q psy11494 102 TFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRD------------------ 163 (197)
Q Consensus 102 ~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrD------------------ 163 (197)
.-..+++...+..-++.|+.+..+.|| +|+..|..++.|-|.++.+|++.++..+..-...
T Consensus 995 ~~~~~~l~~li~~ll~~l~d~~~~vR~-~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d 1073 (1207)
T d1u6gc_ 995 QPIDPLLKNCIGDFLKTLEDPDLNVRR-VALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVD 1073 (1207)
T ss_dssp CTHHHHHHHHSTTTHHHHSSSSTHHHH-HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecC
Confidence 767788999999999999877666665 8899999999999999999999999998864333
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q psy11494 164 PKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 164 pk~~iRe~Aa~aL~~cL~i 182 (197)
--..+|.+|-+++..+|.-
T Consensus 1074 ~gl~~rk~a~e~~~~~l~~ 1092 (1207)
T d1u6gc_ 1074 DGLDIRKAAFECMYTLLDS 1092 (1207)
T ss_dssp THHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3345999999999988854
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00083 Score=59.23 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=128.3
Q ss_pred HHHHhhhhCHHHHHHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-CChhHH
Q psy11494 10 VRTELREVTVEEVTAFTDAFNHHIFEMVSA--NDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-NDIGVM 86 (197)
Q Consensus 10 v~~~~re~s~e~~~~~~~~l~~~I~~L~~s--~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-~D~~vm 86 (197)
+....+.+..+.+..+.+.+...+..++.+ ++...+..++.++..|+..-+.+-...+..+..++...+.. .++++.
T Consensus 588 l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~ 667 (876)
T d1qgra_ 588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC 667 (876)
T ss_dssp HHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 344555666666777777887777777753 33344667788888887665445455567777777777764 567899
Q ss_pred HHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCC-cchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhc---
Q psy11494 87 RYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDR-VEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVR--- 162 (197)
Q Consensus 87 ~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r-~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLr--- 162 (197)
..|..++|.+++.+|.....|++.-++..++-|+.+. ...-|-+++-.+.+++.+.+..|.+|++.+++.+-.+.+
T Consensus 668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~ 747 (876)
T d1qgra_ 668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQV 747 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhccc
Confidence 9999999999999888888888888888888887543 456778889999999999999999999999998877766
Q ss_pred CCc--------HHHHHHHHHHHHHHHHHH
Q psy11494 163 DPK--------PEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 163 Dpk--------~~iRe~Aa~aL~~cL~ii 183 (197)
|+. ..+|++..+++..++.-+
T Consensus 748 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 776 (876)
T d1qgra_ 748 DKSDYDMVDYLNELRESCLEAYTGIVQGL 776 (876)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 246787777776655443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00018 Score=57.25 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=100.8
Q ss_pred hhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHH---HHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHH-H
Q psy11494 37 VSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRF---ANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE-M 112 (197)
Q Consensus 37 ~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf---~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e-v 112 (197)
.++.|..++..++.++..|++- .|+...+.+. .-.+..++.+.|.++-..|++++|.++.........+++.. +
T Consensus 26 ~~~~~~~~~~~Al~~L~~L~~~--~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i 103 (264)
T d1xqra1 26 EQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 103 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3455667788888888888742 2334434333 23356678889999999999999999975434444555543 4
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHh-hhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 113 KKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQ-HVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 113 ~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~-~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
..-+.-|..+....-|..|+..|..|+.+.|.-... .-...++.+...+++++..+++.|+.+|..++.
T Consensus 104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~ 173 (264)
T d1xqra1 104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 173 (264)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh
Confidence 444555655555666788999999999887753332 234567889999999999999999988887543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.0021 Score=55.24 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=100.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
+...+..|.+++...-|.++...+..+...- + ......+-.++..++...++.|-+.|+.++|.++.. ...+..
T Consensus 127 l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~--~-~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~---~~~~~~ 200 (588)
T d1b3ua_ 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRV--S-SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV---LELDNV 200 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS--C-HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT---SCHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH---hcHHHH
Confidence 4455666776655444555555555554322 1 122334556677777888999999999999999985 334555
Q ss_pred HHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 109 DFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 109 e~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
..++-..+.-+-.+....-|.+|+-.|.+++...|.- .+...+++.+...+.|++..||..++++|......+
T Consensus 201 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~ 273 (588)
T d1b3ua_ 201 KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Confidence 5666566666666777777889999999999887753 223445666777788999999999998887765544
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00081 Score=61.40 Aligned_cols=161 Identities=14% Similarity=0.046 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCC--ChhHHHHHHHHHHHhh
Q psy11494 20 EEVTAFTDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSN--DIGVMRYAAKTVGKLA 97 (197)
Q Consensus 20 e~~~~~~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~--D~~vm~~AA~~lG~L~ 97 (197)
+.+..|.+.+...+.+-++.++..-+-.++.|+..+....+.+....+..+...|-+++... ...+.+.++.++|+|+
T Consensus 698 ~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~ 777 (888)
T d1qbkb_ 698 QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLG 777 (888)
T ss_dssp GGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 34556677777777777776766667788888888875554555555666777777777543 4558899999999999
Q ss_pred hccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 98 QISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 98 ~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
...+...+.+++.=++.-+.+|..-+...-|-.|..-|-.+....|..+.+++..|++.| ....+|+..+++.....|.
T Consensus 778 ~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~l~ 856 (888)
T d1qbkb_ 778 YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAV-ASWINPKDDLRDMFCKILH 856 (888)
T ss_dssp HHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH-TTCSSCCHHHHHHHHHHHH
T ss_pred HHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHH
Confidence 876665565666556777778865333333445666677788888888889999999988 4467888888888777776
Q ss_pred HHHH
Q psy11494 178 AALV 181 (197)
Q Consensus 178 ~cL~ 181 (197)
.+-.
T Consensus 857 ~~~~ 860 (888)
T d1qbkb_ 857 GFKN 860 (888)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=0.0007 Score=55.56 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhh--hHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcc
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSR--NIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTF 103 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~--~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~ 103 (197)
...+-+.+..+++++|..-+..++.++..|..... +.... ...+...|..++.+.|.++...|.++++.++......
T Consensus 186 ~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~ 264 (434)
T d1q1sc_ 186 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 264 (434)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHHHHHHhccccchhhhHHhhhcccchhhh-hhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHH
Confidence 34455667788888887777778888877764321 11110 1123345555677889999999999999998643334
Q ss_pred hhhhHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q psy11494 104 SAEYADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAALV 181 (197)
Q Consensus 104 ~~~~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ 181 (197)
...+++.. ++.-.++|+.+..+ -|..|+..|..|+.+.+...-... ..+++.+-..+.++...+|..|+.++..+..
T Consensus 265 ~~~~~~~~~~~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~ 343 (434)
T d1q1sc_ 265 TQKVIDAGALAVFPSLLTNPKTN-IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 343 (434)
T ss_dssp HHHHHHTTGGGGHHHHTTCSSHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHhhcccchh-hhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 44444432 33445666655554 466788889999987766443333 3477788888899999999999999987654
Q ss_pred H
Q psy11494 182 V 182 (197)
Q Consensus 182 i 182 (197)
-
T Consensus 344 ~ 344 (434)
T d1q1sc_ 344 G 344 (434)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=0.0049 Score=53.72 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhCCchh-HHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhC-----CCCChhHHHHHHHHHHHhhhc
Q psy11494 26 TDAFNHHIFEMVSANDVN-EKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLL-----PSNDIGVMRYAAKTVGKLAQI 99 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~-eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l-----~~~D~~vm~~AA~~lG~L~~~ 99 (197)
|.++-+.+++.+++++.. -+.|++.++..+.+.-..........+.+.|..++ +..+..+...|.++++.++..
T Consensus 132 wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 456667788888776643 46688888888865432222333444555554443 345678888999999998875
Q ss_pred cCc-ch-hhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHH-HHhhhcCCcHHHHHHHHHHH
Q psy11494 100 SGT-FS-AEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDF-VFSAVRDPKPEIRLHAVKAI 176 (197)
Q Consensus 100 gG~-~~-~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~-Iw~aLrDpk~~iRe~Aa~aL 176 (197)
-+. +. ..+...-++--++.++ +..+.-|.+++-.|.+++...|..+.+|++.++.. ++....++...+|..+.+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l 290 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 322 11 1122222222223333 45566788899999999999999999999887766 46778899999999998887
Q ss_pred HHH
Q psy11494 177 RAA 179 (197)
Q Consensus 177 ~~c 179 (197)
..+
T Consensus 291 ~~l 293 (861)
T d2bpta1 291 STI 293 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0025 Score=50.32 Aligned_cols=144 Identities=12% Similarity=0.063 Sum_probs=94.3
Q ss_pred HHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhC-CCCChhHHHHHHHHHHHhhhccCcchhhhHHHH
Q psy11494 35 EMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLL-PSNDIGVMRYAAKTVGKLAQISGTFSAEYADFE 111 (197)
Q Consensus 35 ~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l-~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~e 111 (197)
.+.++++..=+..++.+|..+..... .....+ ......|-.++ +..|..+...|+.+++.++.........+++..
T Consensus 66 ~ll~s~~~~vr~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 144 (264)
T d1xqra1 66 RYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD 144 (264)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhh
Confidence 35567776667777777777764320 111111 11122333444 357889999999999999976433334444432
Q ss_pred -HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhh-HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 112 -MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQ-AFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 112 -v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~-~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
++.-+.-|+.+ .+.-+..|+..|..|+...|......+. ..++.+...|.+++..+|+.|+.||..+.
T Consensus 145 gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~ 214 (264)
T d1xqra1 145 GFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 214 (264)
T ss_dssp HHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444555554 4445556788888999998887666654 36788899999999999999999998653
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0082 Score=48.36 Aligned_cols=155 Identities=10% Similarity=-0.019 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHhhcCC-CcchhhhHHHHHHHhhhCCCC--ChhHHHHHHHHHHHhhhcc
Q psy11494 26 TDAFNHHIFEMVSAND--VNEKKSGIIAIVCLLHVDV-GNVNSRNIRFANYLRNLLPSN--DIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d--~~eklggI~aId~Li~~~~-~~~~~~~~rf~~yL~~~l~~~--D~~vm~~AA~~lG~L~~~g 100 (197)
|.++...+++.+.+++ .+.+.+++.++..+.+... .........+..++-..+.+. +.++...|.++++.+....
T Consensus 125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~ 204 (458)
T d1ibrb_ 125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 204 (458)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh
Confidence 4456667777776644 3446688889888875532 223334555666666666543 5678899999999998753
Q ss_pred Ccc-hhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHH-HHhhhcCCcHHHHHHHHHHHHH
Q psy11494 101 GTF-SAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDF-VFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 101 G~~-~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~-Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
... ..+.....+-..+..+-.+..+.-|.+++-.|.+++...|..+-+|+..++.. ++..+.|+...+|..|.+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 284 (458)
T d1ibrb_ 205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 284 (458)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 322 22333334555555555556677788889999999999999999998766555 6788899999999999888765
Q ss_pred HH
Q psy11494 179 AL 180 (197)
Q Consensus 179 cL 180 (197)
..
T Consensus 285 i~ 286 (458)
T d1ibrb_ 285 VC 286 (458)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.07 E-value=0.0052 Score=51.92 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=106.2
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCc-chhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGN-VNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~-~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
...+..++++++..-+..++.++-.|....... .......+..+|..++.+.|.++...|++++++++.........++
T Consensus 206 ~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~ 285 (503)
T d1wa5b_ 206 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 285 (503)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhh
Confidence 455777888877766666777777776432111 2233445667778888899999999999999999865433333344
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+.- ++..++++..+ ...-+..|+.+|..++.+.+......+ ..+++.+...+.+++..||..++.+++.+.
T Consensus 286 ~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 286 DVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 432 55667787754 445567888899999987665443333 367888899999999999999999998764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.0019 Score=54.76 Aligned_cols=154 Identities=13% Similarity=0.060 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 28 AFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 28 ~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
.+-..+..+++++|..-+..++.++..|.+... +....+ ......|-.++.+.|..+...|..++|.++...+..+.
T Consensus 246 ~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~ 324 (503)
T d1wa5b_ 246 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 324 (503)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhccCCc-hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 344557777888887777777888887775431 111111 12233455667788999999999999999976544444
Q ss_pred hhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh-hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV-QAFFDFVFSAVRDPKPEIRLHAVKAIRAALVV 182 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v-~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~i 182 (197)
-+++..+-..+.-|-.+....-|..++.+|..++...|......+ ..++..+-..+.++...|+..|+.+|..+..-
T Consensus 325 ~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 325 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence 455555444454444445555677889999999988776554444 56778888888999999999999999887653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.037 Score=43.53 Aligned_cols=150 Identities=17% Similarity=0.089 Sum_probs=93.8
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHH--HHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRF--ANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf--~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
..+.++++++|+.-|.-+..+|..|- ++..+....+.+- ...|-.+|.+.+.++-..|++++++|+.........++
T Consensus 5 p~lv~~L~~~~~~~~~~a~~~l~~l~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 83 (457)
T d1xm9a1 5 PKAVQYLSSQDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHT-SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678889999988999999998885 2222333333322 34466778889999999999999999854322223333
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhh---hhHHHHHHH------------hhhcCCcHHHHHHH
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQH---VQAFFDFVF------------SAVRDPKPEIRLHA 172 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~---v~~~~d~Iw------------~aLrDpk~~iRe~A 172 (197)
+.- +..-+.-+.......-|..|+..|..|+...+...... ++..+..+. .....++..+++.+
T Consensus 84 ~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a 163 (457)
T d1xm9a1 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHH
Confidence 322 44455555555566668889999999998765433322 222222221 12355677888888
Q ss_pred HHHHHHHHH
Q psy11494 173 VKAIRAALV 181 (197)
Q Consensus 173 a~aL~~cL~ 181 (197)
+.++..+..
T Consensus 164 ~~~l~~~~~ 172 (457)
T d1xm9a1 164 TGCLRNLSS 172 (457)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 887765543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.055 Score=40.89 Aligned_cols=130 Identities=9% Similarity=0.039 Sum_probs=88.0
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHH
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYAD 109 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve 109 (197)
...++++++++|..-|.-++.++..+ +. + .-...|..++...|..|-..|+.+||++....+. ....+.
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~---~~-~------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~~~~ 89 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLR---GG-Q------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDNVFN 89 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH---CC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh---CC-H------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccchHH
Confidence 45688999999988888888776543 21 1 2345666677788999999999999998654332 111222
Q ss_pred HHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 110 FEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 110 ~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
..+ ..+-.+....-|.+|+-.|..+....|. ..+.+++.+=..+.|+...||..|+.++..
T Consensus 90 ~l~----~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 90 ILN----NMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISV 150 (276)
T ss_dssp HHH----HHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred HHH----HHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence 222 2223345666778888888888877653 234566666777889999999988887753
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.39 E-value=0.024 Score=45.86 Aligned_cols=154 Identities=8% Similarity=0.043 Sum_probs=104.3
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~ 106 (197)
+.+.+.+++++++..=+..++.+|..|.... .+....+ ..+...|..++.+.|.++-..|+++++.++..+......
T Consensus 231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 309 (434)
T d1q1sc_ 231 VVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309 (434)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhcccccccchhhhhhchhhhhhhHHhhh-hHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHH
Confidence 4577888888888777778888887776432 1111111 112345677788899999999999999998754333333
Q ss_pred hHHHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhh--hHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q psy11494 107 YADFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHV--QAFFDFVFSAVRDPKPEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 107 ~Ve~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v--~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL~ii 183 (197)
+++.. ++.-+..+..+. ..-|..|+..|.-++.....-...++ ..+++.+-..+.++...++..+..+|...+...
T Consensus 310 i~~~~~i~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~ 388 (434)
T d1q1sc_ 310 VVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388 (434)
T ss_dssp HHHTTCHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHhccC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 44432 445556665544 45677888999999988654322222 345777778889999999999999998887765
Q ss_pred h
Q psy11494 184 A 184 (197)
Q Consensus 184 ~ 184 (197)
.
T Consensus 389 ~ 389 (434)
T d1q1sc_ 389 E 389 (434)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.15 Score=44.11 Aligned_cols=115 Identities=11% Similarity=0.059 Sum_probs=91.6
Q ss_pred HHHHHHhhhCC--CCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchh
Q psy11494 69 RFANYLRNLLP--SNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIF 146 (197)
Q Consensus 69 rf~~yL~~~l~--~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~ 146 (197)
.+...+..++. ..|..+...+..++|.++...|.....|++.=+..-+..|+......-|.+|+.++..+++..|..+
T Consensus 606 ~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 685 (876)
T d1qgra_ 606 VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI 685 (876)
T ss_dssp HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhh
Confidence 44455555554 3477788899999999999888777888888787777788765555678899999999999999999
Q ss_pred HhhhhHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHH
Q psy11494 147 YQHVQAFFDFVFSAVRDPK--PEIRLHAVKAIRAALVVT 183 (197)
Q Consensus 147 ~~~v~~~~d~Iw~aLrDpk--~~iRe~Aa~aL~~cL~ii 183 (197)
.+|++++++.+...|.|+. ..+|.++..++......+
T Consensus 686 ~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~ 724 (876)
T d1qgra_ 686 IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985 579999998887665443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.094 Score=43.97 Aligned_cols=147 Identities=12% Similarity=-0.006 Sum_probs=93.1
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhh--HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhH
Q psy11494 31 HHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRN--IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYA 108 (197)
Q Consensus 31 ~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~--~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~V 108 (197)
..+..+++++|..-+..++.+|..|.... ......+ ......|-.++.++|.++-..|+++++.++.........++
T Consensus 104 ~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 182 (529)
T d1jdha_ 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 55777788888877888888887665322 1111111 11234455667889999999999999999865322223333
Q ss_pred HHH-HHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q psy11494 109 DFE-MKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRA 178 (197)
Q Consensus 109 e~e-v~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~ 178 (197)
+.. +..-+..|+....+.-+..++.+|.-++.+....-...-...+..+...+.+++..+++.++.++..
T Consensus 183 ~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ 253 (529)
T d1jdha_ 183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHh
Confidence 332 3444455556666777888888888887654332211122456667777888888888877777654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.76 E-value=0.015 Score=39.74 Aligned_cols=84 Identities=17% Similarity=0.064 Sum_probs=60.5
Q ss_pred HHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhH
Q psy11494 73 YLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQA 152 (197)
Q Consensus 73 yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~ 152 (197)
.|...|...|..|-..|++++|++..+ +.+ +.-++.|+. ....=|.+|+.-|.++. -+.
T Consensus 26 ~L~~~l~d~~~~vR~~a~~~L~~~~~~------~~~----~~L~~~l~d-~~~~VR~~a~~aL~~i~----------~~~ 84 (111)
T d1te4a_ 26 PLLESLSNEDWRIRGAAAWIIGNFQDE------RAV----EPLIKLLED-DSGFVRSGAARSLEQIG----------GER 84 (111)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGGGCSH------HHH----HHHHHHHHH-CCTHHHHHHHHHHHHHC----------SHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcchh------hhH----HHHHhhhcc-chhHHHHHHHHHHHHhC----------ccc
Confidence 355667788999999999999977432 122 223344543 45566788888877763 246
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHH
Q psy11494 153 FFDFVFSAVRDPKPEIRLHAVKAIR 177 (197)
Q Consensus 153 ~~d~Iw~aLrDpk~~iRe~Aa~aL~ 177 (197)
..+.|-..+.||+..||..|..+|.
T Consensus 85 ~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 85 VRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6777788999999999999999875
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.02 Score=48.33 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=73.6
Q ss_pred HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHH--HHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCch
Q psy11494 68 IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADF--EMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTI 145 (197)
Q Consensus 68 ~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~--ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~ 145 (197)
++-..-|-.+|.+.|..+...|+.+++++++.... ...++.. -|..-+.-|+......-+-.|+..|..|+.+.+..
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~-~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHH-HHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 34445566677789999999999999999875211 1112221 13333444554444456667778999998776543
Q ss_pred hHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 146 FYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 146 ~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
-...=...++.+-..|+++...+++.|+.+|..+.
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~ 129 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 22222345677788899999999999999998543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.44 Score=36.96 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=93.1
Q ss_pred HHHHh-hCCchhHHHHHHHHHHHHhhcCCCcchhhh------HHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCcchh
Q psy11494 33 IFEMV-SANDVNEKKSGIIAIVCLLHVDVGNVNSRN------IRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGTFSA 105 (197)
Q Consensus 33 I~~L~-~s~d~~eklggI~aId~Li~~~~~~~~~~~------~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~ 105 (197)
+..+. ++.+..-+..+..++..|............ ......|..++.+.+..+...|+.+++.|+..... ..
T Consensus 288 l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~-~~ 366 (457)
T d1xm9a1 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HR 366 (457)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH-HH
Confidence 33444 344444455566666666533321111000 01234566777889999999999999999986433 22
Q ss_pred hhHHHHHHHHHhhhcCC-----CcchhhHHHHHHHHHHHhhCCchhHhhhh-HHHHHHHhhhcCC-cHHHHHHHHHHHHH
Q psy11494 106 EYADFEMKKAIEWLGGD-----RVEGKRHAAVLVLKELAVTVPTIFYQHVQ-AFFDFVFSAVRDP-KPEIRLHAVKAIRA 178 (197)
Q Consensus 106 ~~Ve~ev~~AlewL~~~-----r~e~rR~AAvLvLrELa~naPt~~~~~v~-~~~d~Iw~aLrDp-k~~iRe~Aa~aL~~ 178 (197)
.+.+.-+...++.|... ..+.-+.+|+-.|..|+.+.|..--..+. ..++.+...++++ +..++++|+.+|..
T Consensus 367 ~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~ 446 (457)
T d1xm9a1 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446 (457)
T ss_dssp HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23444456677777532 23557888999999999887765444443 4678888888876 67899999998874
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=94.91 E-value=0.25 Score=40.78 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=101.8
Q ss_pred hhhhCHHHHHHHHHHHH----------HHHHHHhhCCc----hhHHHHHHHHHHHHhhc---C-CCcchhhhHHHHHHHh
Q psy11494 14 LREVTVEEVTAFTDAFN----------HHIFEMVSAND----VNEKKSGIIAIVCLLHV---D-VGNVNSRNIRFANYLR 75 (197)
Q Consensus 14 ~re~s~e~~~~~~~~l~----------~~I~~L~~s~d----~~eklggI~aId~Li~~---~-~~~~~~~~~rf~~yL~ 75 (197)
.++++......+..-+. ..+++|++++. ..=+.-+++++..|+.- . .......+..+.+++.
T Consensus 99 ~~~ls~~ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~ 178 (336)
T d1lsha1 99 SEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLS 178 (336)
T ss_dssp TTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 45677776666555442 44777877643 33345789999999743 1 1223455677889998
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHhhhcCC------CcchhhHHHHHHHHHHHhhCCchhHhh
Q psy11494 76 NLLPSNDIGVMRYAAKTVGKLAQISGTFSAEYADFEMKKAIEWLGGD------RVEGKRHAAVLVLKELAVTVPTIFYQH 149 (197)
Q Consensus 76 ~~l~~~D~~vm~~AA~~lG~L~~~gG~~~~~~Ve~ev~~AlewL~~~------r~e~rR~AAvLvLrELa~naPt~~~~~ 149 (197)
..+...|.+-+..+=++||++-.+. + ++.....+.+. ....-|.+|+.-|+-++.+-|..+...
T Consensus 179 ~~~~~~~~~~~~~~LkaLGN~g~p~---~-------i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~ 248 (336)
T d1lsha1 179 QSSDRAKEEEIVLALKALGNAGQPN---S-------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI 248 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCGG---G-------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhccCCHh---H-------HHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence 8888889999999999999987542 1 22333344432 234579999999999888888666555
Q ss_pred hhHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q psy11494 150 VQAFFDFVFSAVRDPKPEIRLHAVKAIRAA 179 (197)
Q Consensus 150 v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~c 179 (197)
+-++|-+ ++-...||-+|..+|-.|
T Consensus 249 l~~i~~n-----~~e~~EvRiaA~~~lm~t 273 (336)
T d1lsha1 249 VLPIFLN-----VAIKSELRIRSCIVFFES 273 (336)
T ss_dssp HHHHHHC-----TTSCHHHHHHHHHHHHHT
T ss_pred HHHHHcC-----CCCChHHHHHHHHHHHhc
Confidence 4444443 344588999999888766
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=1.1 Score=33.25 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhcc
Q psy11494 30 NHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQIS 100 (197)
Q Consensus 30 ~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~g 100 (197)
-..+.++++++|..-+..++.++..+-.....+ -.....++..++...|..|-..|..++|++....
T Consensus 52 ~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~ 118 (276)
T d1oyza_ 52 VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE----DNVFNILNNMALNDKSACVRATAIESTAQRCKKN 118 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccccccc----cchHHHHHHHHhcCCChhHHHHHHHHHHHHcccc
Confidence 456778888888777777777766553222111 1112233445566788889999999999987643
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=2.7 Score=36.82 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhhhccCc---
Q psy11494 26 TDAFNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLAQISGT--- 102 (197)
Q Consensus 26 ~~~l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~~~gG~--- 102 (197)
.+.+.+.+...+.+.+.+.+.-...++..+-.+...........+..++-..|...|..|...|++++++++.....
T Consensus 453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~ 532 (959)
T d1wa5c_ 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (959)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhccccc
Confidence 33344555555555443444433334444434432233455778888899999999999999999999999864221
Q ss_pred --------chhhhHHHHHHHHHhhhcCCCcchhhH----HHHHHHHHHHhhCCchhHhhhhHHHHH----HHhhhcCCc-
Q psy11494 103 --------FSAEYADFEMKKAIEWLGGDRVEGKRH----AAVLVLKELAVTVPTIFYQHVQAFFDF----VFSAVRDPK- 165 (197)
Q Consensus 103 --------~~~~~Ve~ev~~AlewL~~~r~e~rR~----AAvLvLrELa~naPt~~~~~v~~~~d~----Iw~aLrDpk- 165 (197)
....+++.-+..-+..+.......... ..+-.|..+....+-.+.++.+.+.+. ++....||+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 612 (959)
T d1wa5c_ 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (959)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred chhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 123456666666677665433322222 244456666667666666665554444 344556664
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11494 166 PEIRLHAVKAIRAALV 181 (197)
Q Consensus 166 ~~iRe~Aa~aL~~cL~ 181 (197)
........+++..++.
T Consensus 613 ~~~~~~~~e~l~~l~~ 628 (959)
T d1wa5c_ 613 PRFTHYTFESIGAILN 628 (959)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455555555555443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.05 E-value=2.4 Score=27.77 Aligned_cols=56 Identities=20% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCCCChhHHHHHHHHHHHhh
Q psy11494 32 HIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPSNDIGVMRYAAKTVGKLA 97 (197)
Q Consensus 32 ~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~~D~~vm~~AA~~lG~L~ 97 (197)
.+.++++++|..-|..++.++. .+. + .....+|..++...|+.|-..|+++||++-
T Consensus 26 ~L~~~l~d~~~~vR~~a~~~L~---~~~--~-----~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~ 81 (111)
T d1te4a_ 26 PLLESLSNEDWRIRGAAAWIIG---NFQ--D-----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG 81 (111)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHG---GGC--S-----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHH---hcc--h-----hhhHHHHHhhhccchhHHHHHHHHHHHHhC
Confidence 4567888888888888777763 222 1 234566777788889999999999999883
|
| >d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: BC3264-like domain: Hypothetical protein EF3068 species: Enterococcus faecalis [TaxId: 1351]
Probab=83.28 E-value=7.5 Score=29.20 Aligned_cols=130 Identities=11% Similarity=-0.053 Sum_probs=82.7
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHhhcCCCcchhhhHHHHHHHhhhCCC-CChhHHHHHHHHH-HHhhhccCcchhh
Q psy11494 29 FNHHIFEMVSANDVNEKKSGIIAIVCLLHVDVGNVNSRNIRFANYLRNLLPS-NDIGVMRYAAKTV-GKLAQISGTFSAE 106 (197)
Q Consensus 29 l~~~I~~L~~s~d~~eklggI~aId~Li~~~~~~~~~~~~rf~~yL~~~l~~-~D~~vm~~AA~~l-G~L~~~gG~~~~~ 106 (197)
+-..+-+|.+++.-.+++-|+..+....... + . ....++...++. ++-.++-.-+..+ |.+..... +
T Consensus 51 ~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~--~-~----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~----~ 119 (213)
T d2b6ca1 51 LCQEIEAYYQKTEREYQYVAIDLALQNVQRF--S-L----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----E 119 (213)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC--C-H----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG----G
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHhcc--C-H----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhh----h
Confidence 3344557778888778887776665554322 1 1 223555666664 4566666555544 55554321 1
Q ss_pred hHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHhhCCchhHhhhhHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q psy11494 107 YADFEMKKAIEWLGGDRVEGKRHAAVLVLKELAVTVPTIFYQHVQAFFDFVFSAVRDPKPEIRLHAVKAIRAAL 180 (197)
Q Consensus 107 ~Ve~ev~~AlewL~~~r~e~rR~AAvLvLrELa~naPt~~~~~v~~~~d~Iw~aLrDpk~~iRe~Aa~aL~~cL 180 (197)
+ .....+|..++....||.|-+..|. .-++. ....+++.+=..+.|+.-.||.+-+=+|+.+.
T Consensus 120 ~----~~~l~~w~~s~~~w~rR~aiv~~l~-~~~~~------~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~ 182 (213)
T d2b6ca1 120 L----PTIFALFYGAENFWNRRVALNLQLM-LKEKT------NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS 182 (213)
T ss_dssp H----HHHHHHHTTCSSHHHHHHHHHTTTT-CGGGC------CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHhCCCHHHHHHHHHHHHH-HHHcc------cHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 1 2345689999999999988766553 22222 34567777778889999999999999888653
|