Psyllid ID: psy11568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI
Secondary Structure (PSIPRED)
ccEEEEEccccEEEccccccEEEcccccEEEccccccccccccccEEEEEEEEEccccEEEEEEEEEEEEEEEEEccccccEEEccccEEEEEccccEEEEEEEEccccccEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccccccccEEEcccccEEcccccHHHHHHHHHHHHHHHHcccccEEEEEcEEEEEEcEEEEHHcccccEEEEccccEEEEEcccccEEEEEccccccccEEEEc
Coil and Loop (DISEMBL)
MYVLLWLIRDNTVIAYVKDLRIAlsngslmfppfpetgfrpdvhstvyrcrasneaGVILSRFVHVKAGSVVSLldiqgplfrieppyrfefsnesggrldcaaqgsptpkiewli
Flexible Loop (DISEMBL)
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEfsnesggrldcaaqgsptpkiewli
Low Complexity Region (SEG)
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI
Disordered region (IsUnstruct)
*YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEF************************
Disordered Region (DISOPRED)
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPF********VHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI
Disordered Region (DISEMBL)
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI
Disordered Region (DISPRO)
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.456	0.025	0.412	7e-09
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.568	0.032	0.363	5e-05
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.568	0.032	0.363	5e-05
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.568	0.032	0.363	5e-05
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.724	0.016	0.357	0.0006

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W+  D + +  +  +R  L NG+L+  PF    +  DVH+T+YRC ASN  G I+SR V 
Sbjct: 65  WVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQ 124

Query: 66  VKA 68
           V+A
Sbjct: 125 VRA 127

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
            L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+
Sbjct: 55  TLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQ 114

Query: 63  FVHVKA 68
            VH+KA
Sbjct: 115 DVHIKA 120

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
            L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+
Sbjct: 55  TLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQ 114

Query: 63  FVHVKA 68
            VH+KA
Sbjct: 115 DVHIKA 120

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
            L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+
Sbjct: 55  TLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQ 114

Query: 63  FVHVKA 68
            VH+KA
Sbjct: 115 DVHIKA 120

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 49/112 (43%), Gaps = 28/112 (25%)

Query: 14   IAYVKD--------LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
            I ++KD        LR  L NGSL          R D     Y+C A NE GV       
Sbjct: 4250 IHWIKDGLPLRGSHLRHQLQNGSLTI----HRTERDDAGR--YQCLAENEMGV------- 4296

Query: 66   VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGR--LDCAAQGSPTPKIEWL 115
              A  VV L+    P+F++EP    + +  SG    L C A G PTP IEWL
Sbjct: 4297 --AKKVVILVLQSAPVFQVEP---QDMTVRSGDDVALRCQATGEPTPTIEWL 4343

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
270014590	221	hypothetical protein TcasGA2_TC004629 [T	0.594	0.312	0.550	2e-13
195055999	2029	GH17490 [Drosophila grimshawi] gi|193892	0.568	0.032	0.545	2e-12
195444008	2028	GK11449 [Drosophila willistoni] gi|19416	0.568	0.032	0.545	3e-12
195391526	2064	GJ22820 [Drosophila virilis] gi|19415249	0.568	0.031	0.545	3e-12
195110685	2025	GI22819 [Drosophila mojavensis] gi|19391	0.568	0.032	0.545	3e-12
195349089	2097	GM15359 [Drosophila sechellia] gi|194122	0.568	0.031	0.515	4e-12
198451327	2077	GA16078 [Drosophila pseudoobscura pseudo	0.568	0.031	0.530	5e-12
195144188	2078	GL23930 [Drosophila persimilis] gi|19410	0.568	0.031	0.530	6e-12
194745280	2078	GF18608 [Drosophila ananassae] gi|190628	0.543	0.030	0.515	2e-11
442619602	2087	down syndrome cell adhesion molecule 3,	0.568	0.031	0.5	3e-11

>gi|270014590|gb|EFA11038.1| hypothetical protein TcasGA2_TC004629 [Tribolium castaneum]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 48/69 (69%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           WL++D   +  V  LR +L NG+L FPPF    +R DVHSTVYRCRASN AG ILSR V+
Sbjct: 119 WLLQDGQTVTAVPGLRQSLGNGTLYFPPFRAEDYRKDVHSTVYRCRASNLAGTILSRDVN 178

Query: 66  VKAGSVVSL 74
           V+A + + L
Sbjct: 179 VRAANKIFL 187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055999|ref|XP_001994900.1| GH17490 [Drosophila grimshawi] gi|193892663|gb|EDV91529.1| GH17490 [Drosophila grimshawi]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           V+ W++RD T+ + V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR
Sbjct: 80  VVSWVMRDGTLASQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSR 139

Query: 63  FVHVKA 68
            V V+A
Sbjct: 140 NVQVQA 145

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444008|ref|XP_002069676.1| GK11449 [Drosophila willistoni] gi|194165761|gb|EDW80662.1| GK11449 [Drosophila willistoni]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           V+ W++RD T+   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR
Sbjct: 78  VVSWVLRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSR 137

Query: 63  FVHVKA 68
            V V+A
Sbjct: 138 NVQVQA 143

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391526|ref|XP_002054411.1| GJ22820 [Drosophila virilis] gi|194152497|gb|EDW67931.1| GJ22820 [Drosophila virilis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           V+ W++RD T+   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR
Sbjct: 76  VVSWVMRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSR 135

Query: 63  FVHVKA 68
            V V+A
Sbjct: 136 NVQVQA 141

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110685|ref|XP_001999910.1| GI22819 [Drosophila mojavensis] gi|193916504|gb|EDW15371.1| GI22819 [Drosophila mojavensis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           V+ W++RD T+   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR
Sbjct: 74  VVSWVMRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSR 133

Query: 63  FVHVKA 68
            V V+A
Sbjct: 134 NVQVQA 139

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195349089|ref|XP_002041079.1| GM15359 [Drosophila sechellia] gi|194122684|gb|EDW44727.1| GM15359 [Drosophila sechellia]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           ++ W++RD ++   V DLR    NG+L FPPF    +R DVH   YRCRASNEAG +LSR
Sbjct: 69  LVTWVLRDGSLATQVPDLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSR 128

Query: 63  FVHVKA 68
            V V A
Sbjct: 129 NVQVHA 134

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198451327|ref|XP_001358324.2| GA16078 [Drosophila pseudoobscura pseudoobscura] gi|198131438|gb|EAL27462.2| GA16078 [Drosophila pseudoobscura pseudoobscura]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           V+ W++RD T+   V  LR    NG+L FPPF    +R DVH   YRC+ASNEAG ILSR
Sbjct: 74  VVSWVLRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCKASNEAGTILSR 133

Query: 63  FVHVKA 68
            V V+A
Sbjct: 134 NVQVQA 139

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144188|ref|XP_002013078.1| GL23930 [Drosophila persimilis] gi|194102021|gb|EDW24064.1| GL23930 [Drosophila persimilis]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           V+ W++RD T+   V  LR    NG+L FPPF    +R DVH   YRC+ASNEAG ILSR
Sbjct: 75  VVSWVLRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCKASNEAGTILSR 134

Query: 63  FVHVKA 68
            V V+A
Sbjct: 135 NVQVQA 140

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745280|ref|XP_001955116.1| GF18608 [Drosophila ananassae] gi|190628153|gb|EDV43677.1| GF18608 [Drosophila ananassae]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           ++ W++RD ++   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR
Sbjct: 65  LVSWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSR 124

Query: 63  FVHVKA 68
            V V+A
Sbjct: 125 NVQVQA 130

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442619602|ref|NP_996226.2| down syndrome cell adhesion molecule 3, isoform E [Drosophila melanogaster] gi|440217537|gb|AAS65164.2| down syndrome cell adhesion molecule 3, isoform E [Drosophila melanogaster]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 3   VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           ++ W++RD ++   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG +LSR
Sbjct: 69  LVTWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSR 128

Query: 63  FVHVKA 68
            V V A
Sbjct: 129 NVQVHA 134

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.568	0.032	0.5	5.9e-14
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.560	0.031	0.446	2.7e-12
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.491	0.029	0.438	1.1e-09
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.560	0.032	0.369	8.6e-09
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.560	0.032	0.369	1.1e-08
ZFIN|ZDB-GENE-050310-7	2024	dscama "Down syndrome cell adh	0.560	0.032	0.338	7.2e-08
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.560	0.032	0.369	5.1e-07
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.560	0.032	0.369	5.1e-07
RGD|1304887	2111	Dscaml1 "Down syndrome cell ad	0.560	0.030	0.338	1e-06
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.560	0.031	0.338	1.2e-06

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query:     3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
             ++ W++RD ++   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG +LSR
Sbjct:    69 LVTWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTVLSR 128

Query:    63 FVHVKA 68
              V V A
Sbjct:   129 NVQVHA 134

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             ++W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR 
Sbjct:    71 IIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD 130

Query:    64 VHVKA 68
             VHV+A
Sbjct:   131 VHVRA 135

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query:    58 VILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW 114
             +++   +  +    V+ LD+QGP+F  EPP+R EFSN SGG ++C+  GSP P++EW
Sbjct:    10 ILILYVIRAETSQFVNGLDLQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEVEW 66

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+ 
Sbjct:    56 LRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQD 115

Query:    64 VHVKA 68
             VH+KA
Sbjct:   116 VHIKA 120

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+ 
Sbjct:    42 LRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFNNLIHDNTYYCTAENPSGKIRSQD 101

Query:    64 VHVKA 68
             VH+KA
Sbjct:   102 VHIKA 106

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

ZFIN|ZDB-GENE-050310-7 dscama "Down syndrome cell adhesion molecule a" [Danio rerio (taxid:7955)]

 Score = 96 (38.9 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +        V  +R    NG+L    FP + F   +H   Y C A N +G I S+ 
Sbjct:    56 LRWYLATGEESYNVPGIRHVHPNGTLQIFHFPPSSFSKVIHDNTYYCTAENPSGKIRSQD 115

Query:    64 VHVKA 68
             VH+KA
Sbjct:   116 VHIKA 120

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+ 
Sbjct:    56 LRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQD 115

Query:    64 VHVKA 68
             VH+KA
Sbjct:   116 VHIKA 120

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 109 (43.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +     I  V  +R    NG+L   PFP + F   +H   Y C A N +G I S+ 
Sbjct:    56 LRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQD 115

Query:    64 VHVKA 68
             VH+KA
Sbjct:   116 VHIKA 120

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

RGD|1304887 Dscaml1 "Down syndrome cell adhesion molecule-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +     I  V  +R   +NG+L   PF  + F   +H   Y C A N AG I S  
Sbjct:   115 LRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPN 174

Query:    64 VHVKA 68
             + +KA
Sbjct:   175 IRIKA 179

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISO

GO:0007162 "negative regulation of cell adhesion" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA;ISO

GO:0070593 "dendrite self-avoidance" evidence=IEA;ISO

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 91 (37.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query:     4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
             L W +     I  V  +R   +NG+L   PF  + F   +H   Y C A N AG I S  
Sbjct:    57 LRWYLATGDDIYDVPHIRHVHANGTLQLFPFSPSAFNSFIHDNDYFCTAENAAGKIRSPN 116

Query:    64 VHVKA 68
             + +KA
Sbjct:   117 IRIKA 121

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.003
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.004

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 95  ESGGRLDCAAQGSPTPKIEWLI 116
              GRLDC A+G P P I W +
Sbjct: 1   GETGRLDCEAEGIPQPTITWRL 22

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 99  RLDCAAQGSPTPKIEWL 115
           RL C A G+P P I WL
Sbjct: 13  RLKCPASGNPRPTITWL 29

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 9  RDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 66
          R+ T     KD R+ +   S         G R + +   Y+C ASNE G  +S  +H+
Sbjct: 19 RNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
KOG3513|consensus	1051		99.69
KOG3513|consensus	1051		99.68
KOG4221|consensus	1381		99.55
KOG4222|consensus	1281		99.52
KOG4194|consensus	873		99.52
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.46
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.45
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.42
PHA02785	326	IL-beta-binding protein; Provisional	99.42
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.42
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.41
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.41
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.4
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.4
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.39
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.39
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.39
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.39
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.38
PHA02826	227	IL-1 receptor-like protein; Provisional	99.38
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.37
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.36
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.36
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.36
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.36
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.35
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.35
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.35
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.34
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.34
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.34
KOG4221|consensus	1381		99.33
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.33
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.33
KOG4194|consensus	873		99.32
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.32
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.32
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.32
PHA02785	326	IL-beta-binding protein; Provisional	99.31
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.3
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.3
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.3
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.3
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.28
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.28
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.28
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.27
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.27
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.27
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.26
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.25
KOG4222|consensus	1281		99.25
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.24
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.24
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.24
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.23
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.23
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.23
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.22
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.22
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.21
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.2
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.19
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.18
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.17
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.17
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.17
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.16
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.16
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.16
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.15
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.14
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.14
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.13
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.12
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.11
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.07
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.07
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.06
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.06
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.05
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.05
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.03
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.0
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.97
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.97
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.95
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.93
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.91
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.89
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.86
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.79
PHA02826	227	IL-1 receptor-like protein; Provisional	98.76
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.75
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.73
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.67
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.63
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.63
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.62
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.61
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.61
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.51
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.51
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.49
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.47
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.44
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.36
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.34
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.34
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.32
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.3
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.28
smart00409	86	IG Immunoglobulin.	98.28
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.28
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.26
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.26
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.26
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.25
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.23
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.16
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.15
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.14
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.13
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.13
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.11
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.1
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.09
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.09
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.06
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.04
PHA03376	221	BARF1; Provisional	98.03
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.01
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.97
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.97
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.97
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.96
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.92
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.89
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.86
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.86
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.81
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.77
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.76
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.74
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.74
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	97.71
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.68
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.67
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.66
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.64
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.64
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.64
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.62
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.55
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.53
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.52
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.52
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.52
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.52
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.5
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.49
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.47
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.45
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.44
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.41
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.41
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.4
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	97.4
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.36
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.32
KOG3515|consensus	741		97.32
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.26
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.21
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.17
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.17
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.15
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.14
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.1
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.07
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.03
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.02
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.98
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.96
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.96
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	96.95
PHA02633	63	hypothetical protein; Provisional	96.94
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.89
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	96.86
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	96.74
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.66
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	96.66
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.62
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.58
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.57
smart00408	63	IGc2 Immunoglobulin C-2 Type.	96.56
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.48
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.42
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.37
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.2
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.18
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	96.15
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.12
smart00409	86	IG Immunoglobulin.	96.07
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.07
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	96.03
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	95.96
PF00047	64	ig: Immunoglobulin domain The Prosite family only	95.79
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	95.78
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	95.76
KOG3515|consensus	741		95.74
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	95.63
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	95.58
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	95.56
smart00407	75	IGc1 Immunoglobulin C-Type.	95.53
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	95.51
smart00406	81	IGv Immunoglobulin V-Type.	95.33
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	95.27
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.07
KOG1480|consensus	909		94.98
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	94.88
cd05770	93	IgC_beta2m Class I major histocompatibility comple	94.86
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	94.74
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	94.67
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	94.64
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	94.63
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.41
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	94.35
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	94.28
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	94.25
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	94.13
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	94.13
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	94.08
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	93.83
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	93.38
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	93.29
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	93.28
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	92.88
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	92.8
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	92.2
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	92.13
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	92.03
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	91.93
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	91.59
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	91.31
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	90.81
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	90.73
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	90.17
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	89.93
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	89.89
PHA02982	251	hypothetical protein; Provisional	89.19
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	87.03
PHA02987	189	Ig domain OX-2-like protein; Provisional	86.48
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	86.08
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	85.17
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	83.46
PHA03042	286	CD47-like protein; Provisional	83.04
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	82.83
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	81.62
PHA03189	348	UL14 tegument protein; Provisional	80.45

>KOG3513|consensus

Probab=99.69  E-value=3.9e-16  Score=112.59  Aligned_cols=99  Identities=27%  Similarity=0.552  Sum_probs=81.2

Q ss_pred             CcEEEEEccCCeeeecc-ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccC
Q psy11568          1 MYVLLWLIRDNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~-~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~   78 (116)
                      .|.|+| ++||+++... .+.+.....++|.|.++...      |+|.|+|.|+|.+|...+ ..|.|.+.        +
T Consensus       360 ~p~v~W-lkNg~pl~~~~r~~~~~i~~g~L~is~v~~~------dsg~YQC~A~Nk~G~i~anA~L~V~a~--------~  424 (1051)
T KOG3513|consen  360 NPTVKW-LKNGEPLEPAERDPRYKIDDGTLIISNVQES------DSGVYQCIAENKYGTIYANAELKVLAS--------A  424 (1051)
T ss_pred             CCceEE-eeCCeecCccCCCcceEEeCCEEEEEecccc------cCeEEEeeeecccceEeeeeEEEEEcc--------C
Confidence            389999 9999999742 33458889999999999765      999999999999999986 55666554        3


Q ss_pred             CCceEecCC-CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         79 GPLFRIEPP-YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~~-~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       |.|...+. ....+..|.++.+.|...+.|.|.++|.
T Consensus       425 -P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~  461 (1051)
T KOG3513|consen  425 -PVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL  461 (1051)
T ss_pred             -CCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence             77766662 3346677999999999999999999996

>KOG3513|consensus

Probab=99.68  E-value=5.5e-16  Score=111.83  Aligned_cols=96  Identities=25%  Similarity=0.380  Sum_probs=77.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      .|+|.|++.+|+++..  ..+....+..|.|.++..+      |+|.|+|.|.|..|.... ..+.|.+.          
T Consensus       270 ~P~i~W~k~~g~~~~~--r~~~~~~~~vL~I~nv~~~------D~G~Y~C~AeN~~G~~~~~~~v~v~a~----------  331 (1051)
T KOG3513|consen  270 TPQIKWRKVDGKPPPR--RATYSNYGKVLKIPNVQYE------DAGEYECIAENSRGSATHSGHVTVYAP----------  331 (1051)
T ss_pred             CCcEEEEeCCCCCCCc--ceeeeccccEEEecccCcC------CCeEEEEEEecccccceeeEEEEEecC----------
Confidence            4899995555655541  2233344568999999655      999999999999996664 66767775          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.++..+ ++..+..|+++.+.|.+.|.|.|.++|+
T Consensus       332 P~w~~~~-~d~~~~~gs~v~~eC~a~g~P~p~v~Wl  366 (1051)
T KOG3513|consen  332 PYWLQKP-QDTEADTGSNVTLECKASGKPNPTVKWL  366 (1051)
T ss_pred             chhhccc-ceeEecCCCCeEEEEEecCCCCCceEEe
Confidence            8998887 8889999999999999999999999997

>KOG4221|consensus

Probab=99.55  E-value=4.3e-14  Score=102.85  Aligned_cols=97  Identities=28%  Similarity=0.461  Sum_probs=79.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEee-CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS-NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~   78 (116)
                      .|+|.| ++||+.+...+ .++.+. .+.|.|++++..      |+|.|+|.|+|..-... +..|+|.++         
T Consensus       266 ~p~v~W-lrng~~i~~ds-~rivl~g~~slliS~a~~~------dSg~YtC~Atn~~D~idasaev~V~a~---------  328 (1381)
T KOG4221|consen  266 KPSVKW-LRNGEKISVDS-YRIVLVGGSSLLISNATDD------DSGKYTCRATNTNDSIDASAEVTVLAP---------  328 (1381)
T ss_pred             CCceEE-eeCCeeeeecc-eEEEEecccceEEeccccc------cCceEEEEecCCCcccccceEEEEEcC---------
Confidence            489999 99999998644 565554 568999999776      99999999999655555 366777775         


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                       |-|...| ..+.+.++..+.|+|.+.|.|.|.+.|+.
T Consensus       329 -P~~~~~p-~~l~A~e~~die~ec~~~g~p~p~v~w~k  364 (1381)
T KOG4221|consen  329 -PGFTKAP-TTLVAHESMDIEFECPVSGKPIPTVRWYK  364 (1381)
T ss_pred             -CCCCCCC-cceeeeeccceeEeCCCCCCCcceEEEEe
Confidence             7777776 78888889999999999999999999973

>KOG4222|consensus

Probab=99.52  E-value=2.9e-14  Score=103.17  Aligned_cols=98  Identities=21%  Similarity=0.442  Sum_probs=78.5

Q ss_pred             cEEEEEccCCeeeecc-ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCC
Q psy11568          2 YVLLWLIRDNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP   80 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~-~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p   80 (116)
                      |.|+| .|+|+++... ...+....+|.|.|.++++.      |+|+|.|+++|.+|...+..      +.+.++.  .|
T Consensus       162 ptvSw-~Kdg~pl~~~~~~~~~lisgG~LlIsnvrks------D~GtY~CVatNmvG~ReS~~------A~lsv~e--~P  226 (1281)
T KOG4222|consen  162 PTVSW-VKDGKPLDHYDVPIIALISGGNLLISNVRKS------DEGTYACVATNMVGERESIP------ARLSVQE--KP  226 (1281)
T ss_pred             Cccee-ecCCCccccccceeEEEecCCcEEEeccccC------CCceeeeeeccccccccccc------ceeeecc--CC
Confidence            78999 9999998742 23344677889999999776      99999999999999888743      2333332  27


Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .|...+ .+..+..|..+.+.|.+.|.|.|.+.|.
T Consensus       227 ~f~~rp-~~~~v~~g~~~~f~c~v~GdP~P~Vrwk  260 (1281)
T KOG4222|consen  227 WFWKRP-KDLAVLVGAAAEFDCRVGGDPQPTVRWK  260 (1281)
T ss_pred             cccccc-ccceeecccccccccccCCCCCCceeee
Confidence            776666 8888999999999999999999999995

>KOG4194|consensus

Probab=99.52  E-value=7.6e-14  Score=96.34  Aligned_cols=97  Identities=23%  Similarity=0.417  Sum_probs=74.3

Q ss_pred             CcEEEEEccCCee-eeccccce-EEe-eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTV-IAYVKDLR-IAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~-~~~~~~~~-~~~-~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~   76 (116)
                      .|+|.| -|+|.. ++.....| ... +++...|.|++.+      |+|.|+|.|.|.+|...+ .++.|-..       
T Consensus       641 ~PeIaw-qkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~e------D~GiYtC~A~n~AG~isanAtL~V~e~-------  706 (873)
T KOG4194|consen  641 RPEIAW-QKDGGTDFPAARERRLHVMPEDDVFFITNVKIE------DQGIYTCTAQNVAGQISANATLTVLET-------  706 (873)
T ss_pred             Ccceee-hhcCCCCCchhhhheeeecCCCCEEEEeccccc------ccceeEEeeeccccceeeceEEEEecC-------
Confidence            489999 666554 55433223 333 3558999999777      999999999999998886 45544442       


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~  115 (116)
                         |.+..+. ....+..|+++.+.|.+.|.|+ |.+.|+
T Consensus       707 ---p~f~~PL-~~~~V~~get~vlqC~a~~~~a~pr~~W~  742 (873)
T KOG4194|consen  707 ---PSFSIPL-EDQLVVVGETLVLQCLAEGAPADPRLEWF  742 (873)
T ss_pred             ---Ccccccc-cceEEEecceEEEEEecCCCCCCcccccc
Confidence               6776665 7788889999999999999997 999997

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.46  E-value=1e-12  Score=69.30  Aligned_cols=58  Identities=28%  Similarity=0.498  Sum_probs=45.0

Q ss_pred             CcEEEEEccCCeeeeccc-cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.++| +++|.++.... ..+....++.|.|.++..+      |+|.|.|.|.|..|...+ ..|.
T Consensus        15 ~p~i~W-~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867          15 TPNITW-SINGAPIEGTDPDPRRHVSSGALILTDVQPS------DTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEE-EECCEECCCCCCCceEEeeCCEEEECCCChh------hCEEEEEEEECCCCeEEEEEEEE
Confidence            378999 89999886432 2245566789999999765      999999999999998875 4343

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.45  E-value=8.7e-13  Score=69.46  Aligned_cols=53  Identities=32%  Similarity=0.548  Sum_probs=40.8

Q ss_pred             CcEEEEEccCCeeeeccccceEE--eeC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--LSN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--~~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|+++....+ ++.  ..+ +  +|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        12 ~P~i~W-~k~~~~i~~~~~-r~~~~~~~~g~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~   69 (75)
T cd05892          12 PPKIFW-KRNNEMVQYNTD-RISLYQDNSGRVTLLIKNVNKK------DAGWYTVSAVNEAGVATC   69 (75)
T ss_pred             CCeEEE-EECCEECcCCCC-eEEEEEcCCCcEEEEECCCChh------hCEEEEEEEEcCcCeEEE
Confidence            489999 889998864222 332  222 2  6999999766      999999999999998875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.42  E-value=3.2e-12  Score=70.11  Aligned_cols=60  Identities=23%  Similarity=0.396  Sum_probs=46.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v   66 (116)
                      +|.++| ++||.++....+.++...++.|.|.++..     ..|+|.|.|.|.|..|...+..+.+
T Consensus        33 ~p~i~W-~~~g~~l~~~~~~~~~~~~g~L~I~~~~~-----~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          33 PATYRW-KMNGTEIKFAPESRYTLVAGNLVINNPQK-----ARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCEEEE-EECCEECccCCCceEEEECCeEEEccCCc-----cCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            488999 89999886444445666778999988642     2399999999999999988754443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.42  E-value=6.4e-12  Score=82.95  Aligned_cols=95  Identities=16%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-E--E--EEEEeCcEeee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-R--F--VHVKAGSVVSL   74 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~--~--~~v~~~~~~~~   74 (116)
                      +|.|+| ++++. +.   ..+.. ..++.|.|.++..+      |+|.|+|.+.|..|.... .  .  |.|..+     
T Consensus       155 ~~~i~W-~k~~~-~~---~~r~~~~~~~~L~i~~v~~~------d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~-----  218 (326)
T PHA02785        155 NADIIW-SGHRR-LR---NKRLKQRTPGIITIEDVRKN------DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR-----  218 (326)
T ss_pred             CceEEE-ccCCc-cC---CcceEecCCCeEEEeecChh------hCeEEEEEEEeccCCEEEeEEEEEEEEEecc-----
Confidence            368999 66643 22   22332 34578999999766      999999999999876542 2  2  222211     


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc---eeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP---KIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p---~i~W~  115 (116)
                        . .|..+..| ....+..|+.+.|.|.+.|.|.|   .+.|+
T Consensus       219 --~-~pp~~~~p-~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~  258 (326)
T PHA02785        219 --I-IPPTMQLP-EGVVTSIGSNLTIACRVSLRPPTTDADVFWI  258 (326)
T ss_pred             --C-CCceecCC-CcEEecCCCcEEEEEEEECCCCCCCceEEEE
Confidence              1 13334444 66777889999999999998864   79996

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.42  E-value=1.7e-12  Score=68.02  Aligned_cols=52  Identities=23%  Similarity=0.376  Sum_probs=41.7

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++..+..  +.++. ..+++|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        15 ~p~v~W-~k~~~~l~~--~~r~~~~~~g~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   67 (73)
T cd05852          15 KPKFSW-SKGTELLVN--NSRISIWDDGSLEILNITKL------DEGSYTCFAENNRGKANS   67 (73)
T ss_pred             CCEEEE-EeCCEeccc--CCCEEEcCCCEEEECcCChh------HCEEEEEEEECCCCceeE
Confidence            378999 888887753  23443 45679999999766      999999999999998875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.41  E-value=2.2e-12  Score=70.78  Aligned_cols=57  Identities=35%  Similarity=0.511  Sum_probs=44.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF   63 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~   63 (116)
                      .|.|+| ++||.++......++...++.|.|.++..     ..|+|.|+|.|.|..|...+..
T Consensus        33 ~P~i~W-~k~g~~l~~~~~~~~~~~~g~L~i~~~~~-----~~D~G~Y~C~A~N~~G~~~S~~   89 (94)
T cd05848          33 VPTYRW-LRNGTEIDTESDYRYSLIDGNLIISNPSE-----VKDSGRYQCLATNSIGSILSRE   89 (94)
T ss_pred             CCEEEE-EECCeECccCCCceEEeeCCeEEEccCCc-----cCcCEEEEEEEEcCCCeEEecc
Confidence            489999 89999886433445566678899988742     2399999999999999887643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.41  E-value=2.1e-12  Score=68.03  Aligned_cols=53  Identities=23%  Similarity=0.442  Sum_probs=40.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEe--eC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL--SN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~--~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|+|+| ++++.++.... .++..  .+ +  .|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        12 ~P~v~W-~k~~~~l~~~~-~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   69 (75)
T cd05893          12 HPQIFW-KKENESLTHNT-DRVSMHQDNCGYICLLIQGATKE------DAGWYTVSAKNEAGIVSC   69 (75)
T ss_pred             CCEEEE-EECCEECCCCC-CeEEEEEcCCCEEEEEECCCCHH------HCEEEEEEEEcCCCEEEE
Confidence            489999 89988886422 23333  22 2  5899999766      999999999999998875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.40  E-value=4.3e-12  Score=67.15  Aligned_cols=63  Identities=24%  Similarity=0.404  Sum_probs=44.4

Q ss_pred             CcEEEEEccCCeeeeccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v   66 (116)
                      +|+|+| +++|.++...++.+.  ...++.|.|..+..++  ...|+|.|+|.|.|..|...+..++|
T Consensus        12 ~P~i~W-~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          12 PPSFSW-TRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEK--AEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CCeEEE-EECCeECCCcCCCCEEEeCCCceEEEeccccCC--CCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            489999 899998743333233  3346788888876431  13478999999999999888765543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.40  E-value=2.7e-12  Score=66.90  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=43.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~   65 (116)
                      +|.++| ++||+++...  .+....++.|.|.++..+      |+|.|+|.|.|..|... ..++.
T Consensus        12 ~p~v~W-~k~g~~l~~~--~~~~~~~~~L~I~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976          12 PPEIQW-YKNGKLISEK--NRTKKSGHSLTIKDVTEE------DAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CCEEEE-EECCEECCCC--CEEEcCCCEEEECcCCHH------HCEEEEEEEEcCCccEEEEEEEE
Confidence            488999 8899988642  345556678999999766      99999999999998765 34443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.39  E-value=3.8e-12  Score=67.17  Aligned_cols=54  Identities=26%  Similarity=0.496  Sum_probs=41.9

Q ss_pred             CcEEEEEccCCeeeecccc-ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|+++...+. ......++.|.|.++...      |+|.|+|.|.|..|...+
T Consensus        15 ~P~i~W-~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~~~   69 (76)
T cd05868          15 KPSISW-LTNGVPIEIAPTDPSRKVDGDTIIFSKVQER------SSAVYQCNASNEYGYLLA   69 (76)
T ss_pred             CCeEEE-EECCEEccccCCCceEEecCCEEEECCCCHh------hCEEEEEEEEcCCCEEEE
Confidence            489999 889998864222 223345568999999655      999999999999998885

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.39  E-value=2e-12  Score=66.59  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=41.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.++| +|||+++..  +    ...+.|.|.++..+      |+|.|+|.|.|..|.... .++.|
T Consensus        12 ~P~v~W-~kdg~~l~~--~----~~~~~L~i~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863          12 PPEFQW-YKDGKLISG--K----HSQHSLQIKDVTEA------SAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CCEEEE-EECCEECcc--c----CCcCEEEECCCCHH------HCEEEEEEEEECCccEEEEEEEEE
Confidence            489999 999998852  1    13458999999766      999999999999987653 44443

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.39  E-value=3e-12  Score=66.52  Aligned_cols=51  Identities=12%  Similarity=0.056  Sum_probs=40.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.++| ++||+++...  .+ ...+..|.|.++..+      |+|.|+|.|.|..|....
T Consensus        12 ~P~v~W-~k~g~~l~~~--~~-~~~~~~L~I~~v~~~------D~G~YtC~a~N~~G~~~~   62 (70)
T cd05864          12 PPEVKW-YKNGQLIVLN--HT-FKRGVHLTIYEVTEK------DAGNYTVVLTNPITKEEQ   62 (70)
T ss_pred             CCEEEE-EECCEECCCC--CE-EccCCEEEECcCCHH------HCEEEEEEEEECCCceee
Confidence            489999 9999998632  22 233458999999766      999999999999997663

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.39  E-value=3.9e-12  Score=67.94  Aligned_cols=54  Identities=24%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             CcEEEEEccCCeeeeccccceEE--e-------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--L-------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--~-------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++||+++.........  .       ..+.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        12 ~P~v~W-~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~YtC~A~N~~G~~~~   74 (81)
T cd04971          12 KPTLTW-YHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHV------NNGNYTLVASNEYGQDSK   74 (81)
T ss_pred             CCcEEE-EECCEECcCCCceeEEEEeecccccccEEEEEECCCCcc------cCeEEEEEEEeCCCCeee
Confidence            489999 9999998753322111  1       1236999999765      999999999999998774

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.38  E-value=4.1e-12  Score=68.30  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             cEEEEEccCCeeeec-cccceEEe-----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeC
Q psy11568          2 YVLLWLIRDNTVIAY-VKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAG   69 (116)
Q Consensus         2 p~v~W~~~~g~~~~~-~~~~~~~~-----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~   69 (116)
                      +.+.| ++||+++.. ..+.++..     ..+.|.|.++...      |+|.|+|.|.|..+...+ ..|.|..+
T Consensus        17 ~~~~W-~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~------dsG~YtC~a~n~~~~~~a~a~L~V~~p   84 (85)
T cd05853          17 IVFTW-SFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLK------HAGKYVCMVQTSVDKLSAAADLIVRGP   84 (85)
T ss_pred             cEEEE-EECCEECcccCCCccEEEeccCCCCCcEEEecCCHH------HCEEEEEEEEcccCceEEEEEEEEecC
Confidence            67899 999999963 22323333     3458999999766      999999999999988874 55666543

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.38  E-value=1.3e-11  Score=77.59  Aligned_cols=67  Identities=13%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA  104 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  104 (116)
                      ++.|.|.++..+      |+|.|.|.+.|..+.... ..|.|..           +.      ....+.+|+.+.|.|.+
T Consensus        97 ~~~L~I~~v~~~------DsG~Y~C~a~N~~~~~~~~i~L~V~~-----------~~------~~~~~~~G~~v~L~C~~  153 (227)
T PHA02826         97 SENLWIGNVINI------DEGIYICTISSGNICEESTIRLTFDS-----------GT------INYQFNSGKDSKLHCYG  153 (227)
T ss_pred             CCeEEECCCChH------HCEEEEEEEEECCcceEEEEEEEEec-----------CC------ccceEecCCCEEEEeeC
Confidence            458999999766      999999999998776543 3333321           11      23456679999999998


Q ss_pred             c-----CcCCceeEEe
Q psy11568        105 Q-----GSPTPKIEWL  115 (116)
Q Consensus       105 ~-----g~P~p~i~W~  115 (116)
                      .     +.|.|.++|+
T Consensus       154 ~~~~~~~~p~p~I~Wy  169 (227)
T PHA02826        154 TDGISSTFKDYTLTWY  169 (227)
T ss_pred             CCCccccCCCceEEEE
Confidence            6     3468999997

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.37  E-value=8e-12  Score=65.79  Aligned_cols=54  Identities=26%  Similarity=0.486  Sum_probs=40.0

Q ss_pred             CcEEEEEccCCeeeecccc-ceEEeeC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKD-LRIALSN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~-~~~~~~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|..+..... ......+ +  .|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        12 ~P~v~W-~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   69 (75)
T cd05744          12 PPQIFW-KKNNEMLTYNTDRISLYQDNCGRICLLIQNANKE------DAGWYTVSAVNEAGVVSC   69 (75)
T ss_pred             CCeEEE-EECCEECCCCCCcEEEEEcCCCeEEEEECCCCcc------cCEEEEEEEEcCCCcEEE
Confidence            489999 889988864222 1221122 2  5999999766      999999999999998875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.37  E-value=8.6e-12  Score=65.39  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.++| +++|.++....+......  ...|.|.++..+      |+|.|+|.|.|..|....
T Consensus        13 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05748          13 TPTVTW-SKDGKPLKLSGRVQIETTASSTSLVIKNAERS------DSGKYTLTLKNPAGEKSA   68 (74)
T ss_pred             CCeEEE-EECCEEcCCCCeEEEEECCCeEEEEECCCCcC------cCEEEEEEEECCCccEEE
Confidence            489999 899998853332222222  237999999766      999999999999998764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=8.1e-12  Score=66.08  Aligned_cols=54  Identities=22%  Similarity=0.318  Sum_probs=40.6

Q ss_pred             CcEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|.++...... .....++.|.|.++..+      |+|.|.|.|.|..|...+
T Consensus        12 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s   66 (77)
T cd05760          12 RPTYQW-FRDGTPLSDGQGNYSVSSKERTLTLRSAGPD------DSGLYYCCAHNAFGSVCS   66 (77)
T ss_pred             CCcEEE-EECCEECCCCCccEEEeCCCCEEEEeeCCcc------cCEEEEEEEEeCCCeEee
Confidence            378999 8999988643221 22223458999999766      999999999999998753

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.36  E-value=8.1e-12  Score=65.72  Aligned_cols=58  Identities=28%  Similarity=0.506  Sum_probs=44.0

Q ss_pred             CcEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.|+| +++|.++...... .....++.|.|.++..+      |+|.|+|.|.|..|...+ ..|.
T Consensus        15 ~p~i~W-~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978          15 QPTITW-RLNGVPIEELPPDPRRRVDGGTLILSNVQPN------DTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCEEEE-EECCEECCCCCCcceEEccCCEEEECCCChh------hCEEEEEEEEccCCeEEEeEEEE
Confidence            378999 8899888643322 34455678999999766      999999999999998775 4443

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.36  E-value=5e-12  Score=66.35  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=41.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|.++..... .....++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        16 ~p~i~W-~k~g~~~~~~~~-~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   68 (74)
T cd05745          16 QPVIAW-TKGGSQLSVDRR-HLVLSSGTLRISRVALH------DQGQYECQAVNIVGSQRT   68 (74)
T ss_pred             CCEEEE-EECCEECCCCCC-eEEccCCeEEEeeCCHH------hCEEEEEEEEeCCCceeE
Confidence            489999 889988763221 23345678999999766      999999999999998775

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.36  E-value=1.1e-11  Score=68.50  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      +|.+.| +++|.++....+.+...  ....|.|.++.++      |+|.|+|.+.|..|...+ ..|.|..
T Consensus        29 ~p~v~W-~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~------D~G~Ytc~a~N~~G~~~~~~~l~V~~   92 (98)
T cd05762          29 PITCTW-MKFRKQIQEGEGIKIENTENSSKLTITEGQQE------HCGCYTLEVENKLGSRQAQVNLTVVD   92 (98)
T ss_pred             CCceEE-EECCEEecCCCcEEEEecCCeeEEEECCCChh------hCEEEEEEEEcCCCceeEEEEEEEec
Confidence            488999 99999986433333332  2347999999766      999999999999999885 6666654

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.36  E-value=9.5e-12  Score=64.80  Aligned_cols=53  Identities=13%  Similarity=0.307  Sum_probs=40.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|.++..... .....++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        13 ~p~v~W-~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~~~   65 (71)
T cd05723          13 TPTVKW-VKNGDMVIPSDY-FKIVKEHNLQVLGLVKS------DEGFYQCIAENDVGNVQA   65 (71)
T ss_pred             CCEEEE-EECCeECCCCCC-EEEEecCCEEEEcCCcc------cCEEEEEEEEcCCCEEEE
Confidence            489999 888887753222 22345667889999665      999999999999998875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=6.1e-12  Score=65.54  Aligned_cols=58  Identities=21%  Similarity=0.210  Sum_probs=42.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.|.| ++++..+... .......++.|.|.++..+      |+|.|+|.|.|..|...+ ..|.|
T Consensus        12 ~P~v~W-~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          12 TPEVHW-DRIDGPLSPN-RTKKLNNNKTLQLDNVLES------DDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CCeEEE-EECCcCCCCC-ceeEEcCCCEEEEcccCHH------hCEEEEEEEEcCCCeEEEEEEEEE
Confidence            489999 7887766431 2223445679999999766      999999999999998764 44443

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.35  E-value=5.5e-12  Score=66.92  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=40.4

Q ss_pred             CcEEEEEccCCeeeeccccceE---E----eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI---A----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~---~----~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++||+++........   .    ...+.|.|.++..+      |+|.|+|.|+|..|....
T Consensus        12 ~Pti~W-~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~YtC~A~N~~G~~~~   72 (79)
T cd05855          12 KPTLQW-FHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHL------NNGIYTLVAKNEYGEDEK   72 (79)
T ss_pred             CCceEE-EECCEECCCCcceeeeeEeecccceEEEEEECCCCcc------cCEEEEEEEEcCCcccce
Confidence            489999 999999964322111   1    12247999999766      999999999999997764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.35  E-value=1.7e-11  Score=64.87  Aligned_cols=63  Identities=24%  Similarity=0.380  Sum_probs=43.8

Q ss_pred             CcEEEEEccCCeeeeccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v   66 (116)
                      .|.|+| +++|+++....+.++  ...++.|.|.++....  ...|+|.|.|.|.|..|.+.+..++|
T Consensus        12 ~P~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875          12 VPTFQW-TRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGR--PEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CCEEEE-EECCEEccCcCCCcEEEeCCCceEEEeccCCCC--CCCCCEEEEEEEEeccceEEEEEEEE
Confidence            489999 899987643223333  3356789998874210  12379999999999999888765543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.34  E-value=6.6e-12  Score=69.71  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=42.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEee-------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS-------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~-------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.++| +|||+++...........       ...|.|.++..+      |+|.|+|.|.|..|.... ..|.|
T Consensus        33 ~p~v~W-~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Ytc~A~N~~G~~~~t~~L~V   99 (101)
T cd04975          33 PPHINW-TYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKES------EAGTYTFLASNSDASKSLTFELYV   99 (101)
T ss_pred             CCccEE-EeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHh------hCeeEEEEEECCCccEEEEEEEEE
Confidence            478999 999999874222111211       247999999766      999999999999997763 44444

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.34  E-value=8.2e-12  Score=66.06  Aligned_cols=62  Identities=27%  Similarity=0.408  Sum_probs=43.3

Q ss_pred             CcEEEEEccCCeeeeccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~   65 (116)
                      +|+|+| ++||.++......++  ...++.|.|.++....  ...|+|.|.|.|.|..|...+..++
T Consensus        12 ~P~v~W-~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05733          12 PPTFSW-TRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGR--AEDYEGEYQCYASNELGTAISNEIH   75 (77)
T ss_pred             CCeEEE-EECCeECCCCCCCCEEEeCCCCEEEEeccCCCC--CcCCCEEEEEEEEcCCCcEEccccE
Confidence            489999 899998753222233  3346789998875310  1248999999999999988775443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.34  E-value=1.7e-11  Score=67.11  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=43.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      +|.|+| ++++.++... ..++...++.|.|.++.+     ..|+|.|.|.|.|..|...+..+
T Consensus        33 ~P~i~W-~k~~~~i~~~-~~~~~~~~g~L~I~~~~~-----~~D~G~Y~C~A~N~~G~~~s~~a   89 (93)
T cd05849          33 FPIYKW-RKNNLDIDLT-NDRYSMVGGNLVINNPDK-----YKDAGRYVCIVSNIYGKVRSREA   89 (93)
T ss_pred             CCEEEE-EECCEEccCC-CCeEEEECCEEEECcCCc-----CCCCEEEEEEEEeCcceEEEccE
Confidence            489999 8898887532 235566778999988742     23999999999999998887543

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4221|consensus

Probab=99.33  E-value=1.5e-11  Score=90.03  Aligned_cols=101  Identities=22%  Similarity=0.414  Sum_probs=74.9

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~   79 (116)
                      |.|.| .+|..++...+ ..+.+.+|.|.|.++..      +|.|.|+|.+++......+  ..|.|.....  ...  .
T Consensus       170 p~i~w-~kn~~pl~~~~-r~i~lpsG~L~I~~~qp------~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~--~~~--~  237 (1381)
T KOG4221|consen  170 PTIMW-LKNDQPLPLDS-RVIVLPSGALEISGLQP------SDTGEYRCVVTGGASQRTSNEAELTVLSDPG--ALN--K  237 (1381)
T ss_pred             ceeEE-ecccccccCCC-cEEEcCCCcEEeccccc------CCCceEEEEEecCCcCCccceeEEEecCCcc--ccc--c
Confidence            68999 99999876544 45677899999999954      4999999999998765554  3444441100  000  1


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      -.|...| ....+..|+.+.|+|.+.|-|.|.+.|.
T Consensus       238 ~~fl~~p-~~~~v~~g~~v~leCvvs~~p~p~v~Wl  272 (1381)
T KOG4221|consen  238 LVFLDEP-SNAVVVEGDDVVLECVVSGVPKPSVKWL  272 (1381)
T ss_pred             eeeecCC-CccccccCCcEEEEEEecCCCCCceEEe
Confidence            2344455 7788889999999999999999999996

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.33  E-value=1.7e-11  Score=64.30  Aligned_cols=55  Identities=27%  Similarity=0.398  Sum_probs=41.9

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      .|.|+| ++++.++......++. ..++.|.|.++..+      |+|.|+|.|.|..|...+.
T Consensus        12 ~p~v~W-~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~------D~G~Y~C~a~N~~G~~~s~   67 (74)
T cd05738          12 DPEITW-FKDFLPVDTTSNGRIKQLRSGALQIENSEES------DQGKYECVATNSAGTRYSA   67 (74)
T ss_pred             CCEEEE-EECCEECccCCCCCEEEcCCcEEEECCCChh------hCEEEEEEEECCCCceEcc
Confidence            478999 8999887632233333 34668999999655      9999999999999987653

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.33  E-value=1.1e-11  Score=67.19  Aligned_cols=52  Identities=19%  Similarity=0.251  Sum_probs=41.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++.++..  ..+....++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        30 ~P~v~W-~k~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   81 (88)
T cd05851          30 VPVIRW-RKILEPMPA--TAEISMSGAVLKIFNIQPE------DEGTYECEAENIKGKDKH   81 (88)
T ss_pred             CCEEEE-EECCcCCCC--CCEEecCCCEEEECcCChh------hCEEEEEEEEcCCCceEE
Confidence            489999 888877653  2344455668999999766      999999999999998774

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4194|consensus

Probab=99.32  E-value=6.6e-12  Score=87.00  Aligned_cols=73  Identities=27%  Similarity=0.499  Sum_probs=61.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS  107 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~  107 (116)
                      .|.+.+|.-+      |+|.|+|.++|.+|..++..+.+...       . .|.|...| .+..+..|++++|.|.+.|.
T Consensus       575 ~L~L~nVt~t------d~grYQCVvtN~FGStysqk~KltV~-------~-~PsFtktP-~dltl~tg~mArl~CaAtG~  639 (873)
T KOG4194|consen  575 ILHLDNVTFT------DEGRYQCVVTNHFGSTYSQKAKLTVN-------Q-APSFTKTP-EDLTLRTGQMARLECAATGH  639 (873)
T ss_pred             eeeeeeeecc------cCceEEEEEecccCcchhheeEEEee-------c-cCccccCc-ccceeecccceeeeeeccCC
Confidence            4888999766      99999999999999998744333321       1 28888887 78889999999999999999


Q ss_pred             CCceeEEe
Q psy11568        108 PTPKIEWL  115 (116)
Q Consensus       108 P~p~i~W~  115 (116)
                      |.|+|.|.
T Consensus       640 P~PeIawq  647 (873)
T KOG4194|consen  640 PRPEIAWQ  647 (873)
T ss_pred             CCcceeeh
Confidence            99999995

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.32  E-value=1.4e-11  Score=64.51  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| ++++..+....+. ....++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        15 ~p~v~W-~k~~~~~~~~~~~-~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~   67 (73)
T cd04969          15 KPTISW-SKGTELLTNSSRI-CIWPDGSLEILNVTKS------DEGKYTCFAENFFGKANS   67 (73)
T ss_pred             CCEEEE-EECCEEcccCCCE-EECCCCeEEEccCChh------HCEEEEEEEECCCCceEE
Confidence            479999 8888887543222 2334568999999766      999999999999998774

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.32  E-value=1.6e-11  Score=67.04  Aligned_cols=54  Identities=15%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEee-C--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS-N--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~-~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|.++....+.+.... +  ..|.|.++..+      |+|.|+|.|.|..|....
T Consensus        30 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737          30 DPEVSW-LKNDQALALSDHYNVKVEQGKYASLTIKGVSSE------DSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCeEEE-EECCEECccCCCEEEEEcCCCEEEEEEccCChh------hCEEEEEEEEECCCcceE
Confidence            388999 899998865433333333 2  26999999766      999999999999998764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.32  E-value=2.2e-11  Score=66.43  Aligned_cols=56  Identities=21%  Similarity=0.425  Sum_probs=42.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      .|.|+| +++|.++.. .+......++.|.|.++.++      |+|.|.|.|.|..|...+..+
T Consensus        31 ~p~i~W-~kng~~l~~-~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          31 ATYIWW-VNNGSLLVP-PRLQLSNDNRTLTFNNVTRS------DTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             CCEEEE-EECCEECCC-CCEEEeCCCCEEEECcCChh------hCEEEEEEEEcCCCCEEeeeE
Confidence            488999 899988753 12222223458999999766      999999999999998876443

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.31  E-value=4.1e-11  Score=79.17  Aligned_cols=94  Identities=19%  Similarity=0.311  Sum_probs=61.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC-eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~-~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~   79 (116)
                      |.|+| +|+|....    ......++ .|.|.++..+      |+|.|+|.+.|..|... +..|.|....        .
T Consensus        61 ~~i~W-~K~g~~~~----~~~~~~~g~~l~i~~~~~~------DsG~Y~C~a~N~~g~~~~s~~L~V~~~~--------~  121 (326)
T PHA02785         61 LDILW-EKRGADND----RIIPIDNGSNMLILNPTQS------DSGIYICITKNETYCDMMSLNLTIVSVS--------E  121 (326)
T ss_pred             ceEEE-EECCCccc----eEEEccCCceEEEcccCcc------cCeEEEEEEECCCcceEEEEEEEEEecC--------C
Confidence            68999 88774321    12334444 4888888655      99999999999987655 3555554320        0


Q ss_pred             CceEecCCCeEEEeCCCcEEEEee-----ecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCA-----AQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~-----~~g~P~p~i~W~  115 (116)
                      +.+...+ ....+.+|..+.+.|.     ..+.|.|.++|+
T Consensus       122 ~~~~~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~  161 (326)
T PHA02785        122 SNIDLIS-YPQIVNERSTGEMVCPNINAFIASNVNADIIWS  161 (326)
T ss_pred             Cccceee-ccceecccCcEEEECCChhhcccCCCCceEEEc
Confidence            2221111 2334568999999997     346799999996

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.30  E-value=2.8e-11  Score=65.07  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=42.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      .|.+.| +++|..+...........++.|.|.++..+      |+|.|+|.+.|..|...+.
T Consensus        26 ~p~i~W-~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724          26 EPTVSW-RKDGQPLNLDNERVRIVDDGNLLIAEARKS------DEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CCEEEE-EECCEECCCCCCCEEEccCCEEEEeECCcc------cCEEEEEEEEeccCceeee
Confidence            378999 899988764222222344678999999766      9999999999999987753

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.30  E-value=2.4e-11  Score=63.83  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             CcEEEEEccCCeee-eccccceE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVI-AYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~-~~~~~~~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.|+| +++|... ......++  ...++.|.|.++..+      |+|.|.|.|.|..|...+ ..|.
T Consensus        12 ~P~v~W-~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763          12 TPQIAW-QKDGGTDFPAARERRMHVMPEDDVFFIVDVKIE------DTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CCEEEE-EeCCCccCCcccccceEEecCCCEEEEeeCCcc------cCEEEEEEEEcCCCEEEeeEEEE
Confidence            478999 7776532 21112222  223568999999766      999999999999998764 4343

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.30  E-value=2.4e-11  Score=62.87  Aligned_cols=52  Identities=21%  Similarity=0.347  Sum_probs=39.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.+.| ++++..+..  .......++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        12 ~p~v~W-~k~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~   63 (69)
T cd05725          12 VPTVLW-RKEDGELPK--GRAEILDDKSLKIRNVTAG------DEGSYTCEAENMVGKIEA   63 (69)
T ss_pred             CCEEEE-EECCccCCC--CcEEEeeCCEEEECcCChh------HCEEEEEEEEcCCCcEEE
Confidence            478999 777766542  1122335668999999766      999999999999998764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.30  E-value=2.5e-11  Score=62.85  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=40.9

Q ss_pred             CcEEEEEccCCeeeeccccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|.++...  .++ ...++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        12 ~p~i~W-~k~g~~~~~~--~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   64 (69)
T cd05746          12 EPTITW-NKDGVQVTES--GKFHISPEGYLAIRDVGVA------DQGRYECVARNTIGYASV   64 (69)
T ss_pred             CCEEEE-EECCEECCCC--CCEEECCCCEEEECcCChh------hCEEEEEEEECCCCcEEE
Confidence            489999 8899887632  233 334678999999766      999999999999998764

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.28  E-value=2.9e-11  Score=65.07  Aligned_cols=52  Identities=25%  Similarity=0.503  Sum_probs=42.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|.++..  ..++...++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        28 ~p~v~W-~k~g~~~~~--~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05728          28 RPAYRW-LKNGQPLAS--ENRIEVEAGDLRITKLSLS------DSGMYQCVAENKHGTIYA   79 (85)
T ss_pred             CCEEEE-EECCEECCC--CCeEEEeCCEEEEeeCCHH------HCEEEEEEEECCCCeEEE
Confidence            488999 899998763  2345566789999999766      999999999999998764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.28  E-value=2.5e-11  Score=64.49  Aligned_cols=50  Identities=16%  Similarity=0.301  Sum_probs=40.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      |.|.| ++||.++..  +.+....++.|.|.++..+      |+|.|+|.|.|..|...
T Consensus        23 ~~v~W-~k~g~~l~~--~~~~~~~~~~L~I~~~~~~------DsG~Y~C~a~n~~g~~~   72 (79)
T cd04973          23 QSINW-TKDGVQLGE--NNRTRITGEEVQIKDAVPR------DSGLYACVTSSPSGSDT   72 (79)
T ss_pred             ceEEE-eeCCcCCCC--CceEEEeCCEEEECCCChh------hCEEEEEEEeCCCCccc
Confidence            67999 899998864  2344555678999999766      99999999999988755

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.28  E-value=2.5e-11  Score=67.41  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             CcEEEEEccCCeeeeccccceEE--------eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--------~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.+.| ++||+++.........        .....|.|.++..+      |+|.|+|.|.|..|.... ..|.|
T Consensus        32 ~P~v~W-~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------D~G~Ytc~A~N~~g~~~~t~~l~V   99 (101)
T cd05859          32 PPQIRW-LKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEE------DSGLYTALAQNEDAVKSYTFALQI   99 (101)
T ss_pred             CCceEE-EECCEECcCCcceEEeccccccceeeccEEEEeeCCHH------HCEEEEEEEEcCCceEEEEEEEEE
Confidence            488999 9999998742221111        11247999999766      999999999999988763 54444

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.27  E-value=6.6e-11  Score=63.87  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=40.8

Q ss_pred             CcEEEEEccCCeeeeccc-cceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|+++.... +......  .+.|.|.++.++      |+|.|+|.|.|..|....
T Consensus        24 ~P~v~W-~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~N~~G~~~~   80 (86)
T cd05894          24 APTVTW-SRGDKAFTETEGRVRVESYKDLSSFVIEGAERE------DEGVYTITVTNPVGEDHA   80 (86)
T ss_pred             CCeEEE-EECCEECccCCCeEEEEEcCCeEEEEECCCccC------cCEEEEEEEEeCCCcEEE
Confidence            489999 99999886432 2222222  237999999766      999999999999998764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.27  E-value=6.1e-11  Score=65.04  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=43.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| +++|..+... ..++..  .++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|.
T Consensus        32 ~p~v~W-~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          32 EPTMTW-TKDGEPIESG-EEKYSFNEDGSEMTILDVDKL------DEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CCEEEE-EECCEECcCC-CCEEEEeCCCCEEEECCCChh------hCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            488999 8999887643 122322  2347999999766      999999999999998764 555543

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.27  E-value=3.9e-11  Score=65.35  Aligned_cols=56  Identities=30%  Similarity=0.436  Sum_probs=43.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      +|.++| +++|.++......+....++.|.|.++..     ..|+|.|+|.|.|..|.+.+.
T Consensus        33 ~p~i~W-~k~~~~l~~~~~~~~~~~~~~L~i~~~~~-----~~d~G~Y~C~a~N~~G~~~S~   88 (91)
T cd04967          33 PPTYRW-LMNGTEIDDEPDSRYSLVGGNLVISNPSK-----AKDAGRYQCLASNIVGTVLSR   88 (91)
T ss_pred             CCEEEE-EECCEECCCCCCCCEEEECCEEEEecCCc-----cCCCEEEEEEEEcCCCEEEec
Confidence            479999 89999885433445566678899988753     139999999999999987764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.26  E-value=8.2e-11  Score=63.77  Aligned_cols=60  Identities=20%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEee-----C---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS-----N---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~-----~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      +|.++| ++++..+.... .++...     .   ..|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        15 ~~~i~W-~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~------D~G~YtC~A~N~~G~~~~~~~L~V~~   83 (88)
T cd05735          15 PIIVRW-EKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVRE------DSGFFSCHAINSYGEDRGIIQLTVQE   83 (88)
T ss_pred             CCEEEE-eeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcc------cCEEEEEEEEcCCCcceEEEEEEEeC
Confidence            378999 99998875322 122211     1   36999999666      999999999999998875 5566654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.25  E-value=5.8e-11  Score=61.93  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=38.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +|.++| +++|.++... ..++...+.+|.|.++..+      |+|.|+|.|.|...
T Consensus        12 ~P~v~W-~kdg~~l~~~-~~~~~~~~~~L~I~~v~~~------D~G~YtC~a~~~~~   60 (72)
T cd07702          12 APEVIW-LKDGLPAAEK-CSRYHVDGYSLVIKDVTEE------DAGIYTILLGIKQY   60 (72)
T ss_pred             CCeEEE-EECCEECCCC-CcEEEeCCCEEEECcCCHH------HCEEEEEEEEcccc
Confidence            489999 9999987642 2344555668999999766      99999999999843

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG4222|consensus

Probab=99.25  E-value=2e-11  Score=88.94  Aligned_cols=96  Identities=23%  Similarity=0.385  Sum_probs=78.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~   79 (116)
                      +|.|.| .+++..+.. .+..+.....+|.|.++...      |+|.|.|.+.|..|... +..++|.++          
T Consensus       254 ~P~Vrw-kk~~~~~P~-~ry~i~~d~qtl~i~r~tp~------deg~y~C~a~n~vG~l~asa~ltV~ap----------  315 (1281)
T KOG4222|consen  254 QPTVRW-KKDDPSLPR-SRYSILDDTQTLRIDRVTPT------DEGTYVCPAENLVGGLEASATLTVQAP----------  315 (1281)
T ss_pred             CCceee-eccCCCCCc-cceeeeeccccccccccCCC------cccceeeeccccccccccccceEEecC----------
Confidence            488999 777665542 23344555578999999665      99999999999998877 477888876          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|..++ .+..+..|..+.|.|.+.|+|.|.+.|.
T Consensus       316 P~f~kkp-~dq~v~lg~~vt~pc~~~gnP~PavfW~  350 (1281)
T KOG4222|consen  316 PSFGKKP-RDQKVALGGTVTFPCETLGNPPPAVFWL  350 (1281)
T ss_pred             ccccccc-CccccccCceEEeeeecCCCCCcceEEe
Confidence            8888887 7777788999999999999999999996

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.24  E-value=6.5e-11  Score=63.55  Aligned_cols=54  Identities=17%  Similarity=0.327  Sum_probs=39.8

Q ss_pred             CcEEEEEccCCeeeeccccc---eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|+++......   +.......|.|.++..+      |+|.|+|.+.|..|...+
T Consensus        23 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~------D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857          23 TPTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSINH   79 (85)
T ss_pred             CCEEEE-EECCEECCCCCceeeeEEeCCceEEEEccCCcc------cCEEEEEEEEeCCCEEEE
Confidence            378999 8999988642221   11223347889999655      999999999999998774

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.24  E-value=8.2e-11  Score=62.32  Aligned_cols=54  Identities=19%  Similarity=0.371  Sum_probs=40.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++.++....+......+  +.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        15 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~   70 (78)
T cd05743          15 TPIINW-RLNWGHVPDSARVSITSEGGYGTLTIRDVKES------DQGAYTCEAINTRGMVFG   70 (78)
T ss_pred             CCEEEE-EECCeECCCCCCEEEEECCCEEEEEECCCChH------HCEEEEEEEEecCCEEEe
Confidence            489999 8888777543222222222  37999999766      999999999999998875

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.24  E-value=5.7e-11  Score=61.62  Aligned_cols=57  Identities=23%  Similarity=0.256  Sum_probs=40.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.++| ++++.++... .......++.|.|.++..+      |+|.|+|.|.|..|.... ..|.
T Consensus        12 ~p~v~W-~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05731          12 TPEISW-IKIGGELPAD-RTKFENFNKTLKIDNVSEE------DDGEYRCTASNSLGSARHTISVT   69 (71)
T ss_pred             CCeEEE-EECCeECCCC-ceeEecCCCEEEECCCCHH------HCEEEEEEEEeCCceEEEEEEEE
Confidence            489999 7777766421 1122233458999999766      999999999999997664 4443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.23  E-value=8.3e-11  Score=63.35  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             EEEEEccCCeeeeccc-cceE---E--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRI---A--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~---~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .++| ++||.++.... ..++   .  ...+.|.|.++...      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        18 ~v~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~YtC~A~n~~g~~~~~~~L~V~~   83 (85)
T cd05854          18 TFTW-SLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLS------HAGTYTCTAQTVVDSASASATLVVRG   83 (85)
T ss_pred             EEEE-EECCeEccccCCCCcEEEEEecceEeEEEEccCChh------hCeEEEEEEecCCCCEEEEEEEEEEC
Confidence            6899 88998885421 1111   1  13458999999766      999999999999998875 5565553

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.23  E-value=1.9e-10  Score=67.29  Aligned_cols=71  Identities=23%  Similarity=0.334  Sum_probs=52.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|.|.+.+..|.... ..|.|..+          |.+...+ .......|+.+.|.|.+.|
T Consensus         2 sL~i~~v~~~------D~G~Y~C~~~~~~~~~~~~~~l~v~~~----------P~v~~~~-~~~~~~~~~~~~L~C~a~g   64 (139)
T cd05771           2 SLTLPGLTVH------DEGTYICSVSTPPHQAQQIIQLSVSEP----------PRVRLSL-EKLVSMIEEPQTLICHIAG   64 (139)
T ss_pred             eEEECCCCHH------HCEEEEEEEEccCcceeeEEEEEEecC----------CceEEeC-CCceeecCCcEEEEEEECC
Confidence            5789999766      999999999988776553 55666554          6665554 3334446899999999999


Q ss_pred             c-CC-ceeEEe
Q psy11568        107 S-PT-PKIEWL  115 (116)
Q Consensus       107 ~-P~-p~i~W~  115 (116)
                      . |. +.++|+
T Consensus        65 ~~P~~~~i~W~   75 (139)
T cd05771          65 YYPLDVQVEWT   75 (139)
T ss_pred             CCCCCeEEEEE
Confidence            6 54 488996

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.23  E-value=1.7e-10  Score=62.96  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      +.++|++.+|.++....+... ..++   .|.|.++..+      |+|.|+|.|.|..|.....++
T Consensus        29 ~~v~W~k~~g~~~~~~~r~~~-~~~g~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~i   87 (92)
T cd05866          29 ESIDWYNPQGEKIVSSQRVVV-QKEGVRSRLTIYNANIE------DAGIYRCQATDAKGQTQEATV   87 (92)
T ss_pred             CeEEEEeCCCeEecCCCCEEE-EeCCCeeEEEEecCChH------HCEEEEEEEEcCCCcEEEEEE
Confidence            368995457877754322222 2233   7999999766      999999999999998765443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.22  E-value=1.5e-10  Score=63.69  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             cEEEEEccCCeeeeccccceEE--ee---CCeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA--LS---NGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~--~~---~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~   60 (116)
                      |.|+|++.||..+..... ++.  ..   .++|.|.++..+      |+|.|+|.|.|.. |...
T Consensus        31 p~i~W~~~~g~~l~~~~~-r~~v~~~~~~~~~L~I~~v~~~------D~G~YtC~A~N~~~g~~~   88 (96)
T cd05865          31 KDISWFSPNGEKLTPNQQ-RISVVRNDDYSSTLTIYNANID------DAGIYKCVVSNEDEGESE   88 (96)
T ss_pred             CEEEEECCCCcCccccCC-eEEEEeCCCCceEEEEeccChh------hCEEEEEEEEcCCCCcEE
Confidence            699994448877653221 222  12   147999999766      9999999999997 5555

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.22  E-value=1e-10  Score=62.87  Aligned_cols=59  Identities=25%  Similarity=0.371  Sum_probs=42.3

Q ss_pred             EEEEEccCCeeeecccc-c---eE--EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          3 VLLWLIRDNTVIAYVKD-L---RI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~---~~--~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .++| +++|.++..... .   +.  ...++.|.|.++...      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        18 ~~~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~   83 (85)
T cd04970          18 TFTW-SFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLK------HAGKYTCTAQTVVDSLSASADLIVRG   83 (85)
T ss_pred             EEEE-EECCeEeeccCCCccEEEEecccccceEEEccCCHH------hCeeeEEEEecCCCcEEEEEEEEEEC
Confidence            5689 889998864211 1   11  124568999999766      999999999999988764 5555554

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.21  E-value=2.3e-10  Score=60.18  Aligned_cols=59  Identities=24%  Similarity=0.363  Sum_probs=42.7

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeC-CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSN-GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~-~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.+.| +++++.+......+.. ..+ ..|.|.++..+      |+|.|+|.+.|..|.... ..|.|
T Consensus        12 ~p~v~W-~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736          12 LPRLTW-LKNGMDITPKLSKQLTLIANGSELHISNVRYE------DTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CCEEEE-EECCEECCCCCCccEEEeCCCCEEEECcCCcc------cCEEEEEEEEcCCCCcceEEEEEE
Confidence            478999 8999887643222322 233 36999999665      999999999999998774 44544

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.20  E-value=1.7e-10  Score=62.42  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=39.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| ++++..+..  .......++.|.|.++..+      |+|.|.|.|.|..|...+
T Consensus        30 ~p~v~W-~k~~~~~~~--~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~   81 (88)
T cd04968          30 VPQIKW-RKVDGSMPS--SAEISMSGAVLKIPNIQFE------DEGTYECEAENIKGKDTH   81 (88)
T ss_pred             CCEEEE-EECCCcCCC--ccEEEEeCCEEEECCCCcc------cCEEEEEEEEECCCcEEE
Confidence            378999 777665542  2223356679999999766      999999999999998764

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.19  E-value=1.9e-10  Score=60.17  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=39.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.|++.++..+.... ......++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        15 ~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05764          15 EPAIHWISPDGKLISNSS-RTLVYDNGTLDILITTVK------DTGSFTCIASNAAGEATA   68 (74)
T ss_pred             CCEEEEEeCCCEEecCCC-eEEEecCCEEEEEECChh------hCEEEEEEEECCCCeEEE
Confidence            479999545777665322 123345678999999665      999999999999997664

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.18  E-value=2e-10  Score=59.50  Aligned_cols=50  Identities=18%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|+++...  .+.......|.|.++.        |+|.|+|.|.|..|...+
T Consensus        15 ~P~v~W-~k~g~~l~~~--~~~~~~~~~L~i~~~~--------d~G~Y~C~A~N~~G~~~~   64 (69)
T cd05739          15 MPYVKW-MKGGEELTKE--DEMPVGRNVLELTNIY--------ESANYTCVAISSLGMIEA   64 (69)
T ss_pred             CCEEEE-EECCEECCCc--cceecCccEEEEeccc--------cCeeEEEEEEeCCCEEEE
Confidence            489999 8888887532  2233344578888873        899999999999998764

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.17  E-value=3.8e-10  Score=61.05  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=44.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.+.| +++|..+....+.......+  .|.|.++..+      |+|.|+|.+.|..|.... ..|.
T Consensus        29 ~~~v~W-~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   29 PPTVTW-YKNGRPLTSSQRYQIESDGGSSSLTIKNVTRE------DAGTYTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             SSEEEE-EETTEEEESSSSEEEEEETTEEEEEESSESGG------GSEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCcccc-cccccceeeeeeeeeecccceeEEccCCCChh------hCEEEEEEEEECCCEEEEEEEEE
Confidence            378999 88999998644544444433  7999999766      999999999999887764 4443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.17  E-value=2.9e-10  Score=61.81  Aligned_cols=61  Identities=20%  Similarity=0.422  Sum_probs=43.0

Q ss_pred             CcEEEEEccCCeeeec------cccceEEe-eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAY------VKDLRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~------~~~~~~~~-~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.| +++|..+..      ....++.. .++.|.|.++..+      |+|.|.|.|.|..|...+ ..|.|..
T Consensus        15 ~p~v~W-~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~   83 (90)
T cd05726          15 QPAIFW-QKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRS------DVGYYICQTLNVAGSILTKAYLEVTD   83 (90)
T ss_pred             CCEEEE-EeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChh------hCEEEEEEEEcCCCceEEEEEEEEee
Confidence            378999 667654311      11234433 3568999999766      999999999999998875 5566653

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.17  E-value=4e-10  Score=61.51  Aligned_cols=55  Identities=11%  Similarity=0.270  Sum_probs=37.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.++|++.+|..+....+......+   ..|.|.++..+      |+|.|+|.|.|..|....
T Consensus        28 p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~g~~~~   85 (92)
T cd04977          28 PKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIE------DAGIYKCVATDAKGTESE   85 (92)
T ss_pred             CCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcc------cCEEEEEEEEcCCCCcce
Confidence            46899954577766542222222222   27999999766      999999999999765443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.16  E-value=9.8e-11  Score=62.30  Aligned_cols=54  Identities=22%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|..+..............|.|.++..+      |+|.|+|.+.|..|....
T Consensus        23 ~p~i~W-~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~   76 (82)
T cd05856          23 RPDITW-LKDNKPLTPTEIGESRKKKWTLSLKNLKPE------DSGKYTCHVSNRAGEINA   76 (82)
T ss_pred             CCcEEE-EECCcCCcCCccceecCceEEEEEccCChh------hCEEEEEEEEcCCccEEE
Confidence            378999 888887753221111122347999999766      999999999999997663

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.16  E-value=3.9e-10  Score=61.83  Aligned_cols=63  Identities=29%  Similarity=0.478  Sum_probs=43.0

Q ss_pred             CcEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILSRFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~~~~~   65 (116)
                      .|.++| ++||..+...... .....++.+.|.++..... .+.|+|.|.|.|.|. .|...+..+.
T Consensus        28 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~-~~~D~G~Y~C~a~N~~~G~~~s~~~~   92 (95)
T cd05722          28 PPKIEW-KKDGVLLNLVSDERRQQLPNGSLLITSVVHSKH-NKPDEGFYQCVAQNDSLGSIVSRTAR   92 (95)
T ss_pred             CCEEEE-EECCeECccccCcceEEccCCeEEEeeeeccCC-CCCcCEEEEEEEECCccCcEEEeeeE
Confidence            489999 8999988643322 2344566787777632100 134999999999999 9988765433

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.16  E-value=3.3e-10  Score=61.86  Aligned_cols=54  Identities=19%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|..+....+.......+   .|.|.++..+      |+|.|+|.|.|.+|....
T Consensus        30 ~p~i~W-~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891          30 DPEVIW-FKNDQDIELSEHYSVKLEQGKYASLTIKGVTSE------DSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCeEEE-EECCEECCCCCCEEEEEcCCCEEEEEECCCChh------hCEEEEEEEEeCCCceee
Confidence            478999 78888775433322222222   6899999655      999999999999998774

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.15  E-value=4.2e-10  Score=61.43  Aligned_cols=51  Identities=12%  Similarity=0.254  Sum_probs=39.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.|.| ++||+++....  +....++.|.|.++..+      |+|.|+|.+.|..+...
T Consensus        29 ~p~i~W-yk~~~~i~~~~--~~~~~~~~L~I~~v~~~------DsG~YtC~~~n~~~~~~   79 (92)
T cd05757          29 LPPVQW-YKDCKLLEGDR--KRFVKGSKLLIQNVTEE------DAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             CCcEEE-eECCEECCCCc--cEEecCCEEEEeeCChh------hCEEEEEEEEecCCCEE
Confidence            378999 99999886422  22236679999999766      99999999999976654

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.14  E-value=6.8e-10  Score=58.88  Aligned_cols=57  Identities=30%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             CcEEEEEccCCeeeecc-----ccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYV-----KDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF   63 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~-----~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~   63 (116)
                      .|.|+|++.++......     ...+. ...++.|.|.++..+      |+|.|.|.|.|..|...+..
T Consensus        12 ~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~s~~   74 (79)
T cd05734          12 PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEE------DSGYYLCKVSNDVGADASKS   74 (79)
T ss_pred             CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcc------cCEEEEEEEEeCCCCCCceE
Confidence            48999944344322110     11222 245678999999765      99999999999999876543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.14  E-value=2.8e-10  Score=62.43  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             cEEEEEccCCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      |.|+| +++|..+..  ..+.+....++.|.|.++..+      |+|.|+|.+.|..|...+
T Consensus        34 ~~v~W-yk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~~~N~~g~~~~   88 (94)
T cd05756          34 LNLTW-YKSDGKTPIPTEERSRMHQQKDLLWFLPAALE------DSGLYTCVVRNSTYCMKV   88 (94)
T ss_pred             ceEEE-EEcCCCCcccccccceeeecCCeEEEccCCcc------cCeEEEEEEcCCCccEEE
Confidence            68999 788766432  123344445678999999766      999999999999988764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.13  E-value=6.8e-10  Score=60.31  Aligned_cols=54  Identities=15%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             CcEEEEEccCCeeeeccccceEE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|..+.........  .....|.|.++..+      |.|.|.|.|.|..|...+
T Consensus        29 ~p~v~W-~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972          29 LPKVEW-IIAGLIVIQTRTDTLETTVDIYNLQLSNITSE------TQTTVTCTAENPVGQANV   84 (90)
T ss_pred             CCeEEE-EECCEEccCCccEEEEecCCEEEEEEecCCcc------cCEEEEEEEECCCCceeE
Confidence            489999 8898877532211111  12237999999766      999999999999998774

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.12  E-value=7.7e-10  Score=60.33  Aligned_cols=54  Identities=13%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|..+....+......  .+.|.|.++..+      |+|.|.|.|.|..|....
T Consensus        32 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~   87 (92)
T cd05747          32 APTVTW-MREGQIIVSSQRHQITSTEYKSTFEISKVQMS------DEGNYTVVVENSEGKQEA   87 (92)
T ss_pred             CCEEEE-EECCEECCCCCcEEEEEcCCeeEEEECCCCcc------cCEeEEEEEEcCCCCEeE
Confidence            378999 888888754322222222  247999999665      999999999999998764

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.11  E-value=6e-10  Score=58.33  Aligned_cols=54  Identities=20%  Similarity=0.236  Sum_probs=39.4

Q ss_pred             CcEEEEEccCCeeeeccccce---EEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLR---IAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~---~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|+++.......   ...  ....|.|.++..+      |+|.|+|.|.|..|....
T Consensus        13 ~p~~~W-~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   71 (75)
T cd05750          13 SLRFKW-FKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLA------DSGEYTCVVENILGNDTV   71 (75)
T ss_pred             CceEEE-EcCCeeccccCCcceEEEEecCceEEEEEccCCcc------cCeEEEEEEEEcCCceeE
Confidence            378999 88999886432221   111  1347999999766      999999999999987653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.07  E-value=1.4e-09  Score=59.93  Aligned_cols=54  Identities=24%  Similarity=0.274  Sum_probs=38.4

Q ss_pred             CcEEEEEccCCeeeeccc---cceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK---DLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~---~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++..+....   ..++...    .+.|.|.++..+      |+|.|+|.|.|..|....
T Consensus        31 ~P~v~W-~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   91 (97)
T cd05869          31 IPSITW-RTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYT------DAGEYLCTASNTIGQDSQ   91 (97)
T ss_pred             CCEEEE-EECCccccCCccccCccEEEEcCccEEEEEEecCccC------cCEEEEEEEecCCCCeeE
Confidence            489999 77887764311   1122221    137999999766      999999999999998764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.07  E-value=8.8e-10  Score=59.91  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=27.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      +.|.|.++..+      |+|.|+|.|.|..|...+ ..|.
T Consensus        55 ~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~sa~L~   88 (90)
T cd04974          55 EVLYLRNVSFD------DAGEYTCLAGNSIGPSHHSAWLT   88 (90)
T ss_pred             ceEEEeccccc------cCcEEEEEeecccCcccCCEEEE
Confidence            47999999766      999999999999998764 4443

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.06  E-value=8.5e-10  Score=58.85  Aligned_cols=50  Identities=26%  Similarity=0.377  Sum_probs=37.7

Q ss_pred             c-EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      | .|+| ++||.++..    +.....+.|.|..+.        |+|.|.|.|.|..|...+...
T Consensus        28 P~~I~W-~k~g~~l~~----~~~~~~s~L~i~~~~--------d~g~Y~C~A~N~~G~~~s~~a   78 (81)
T cd05749          28 PVEILW-WQGGSPLGD----PPAPSPSVLNVPGLN--------ETSKFSCEAHNAKGVTTSRTG   78 (81)
T ss_pred             CeEEEE-EECCEECCC----CCCCCCCEEEEcccc--------CCeEEEEEEEeccCcEEeeeE
Confidence            7 6999 999998753    111234578888773        889999999999998876443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.06  E-value=1.5e-09  Score=59.63  Aligned_cols=59  Identities=25%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             CcEEEEEccCCeeeecc----ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYV----KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~----~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|+.+...    ...+....++.+.+..+.... ....|+|.|+|.|.|..|...+
T Consensus        30 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~D~G~Y~C~a~N~~G~~~s   92 (100)
T cd07693          30 TPTIQW-LKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGR-KGRSDEGVYVCVAHNSLGEAVS   92 (100)
T ss_pred             CCEEEE-EECCEECccccCCCCcceEEecCCcEEEEEeeccC-CCcCcCEEEEEEEEccccceec
Confidence            378999 8999988641    112233445544332221000 0134999999999999998665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.05  E-value=6.7e-10  Score=59.96  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |+|+| ++||.++.... .++...++.|.|.++..+      |+|.|+|.+.+..
T Consensus        25 ~~i~W-~~ng~~i~~~~-~r~~~~~~~L~I~nv~~~------DsG~Y~C~a~e~~   71 (87)
T cd05873          25 ARVVW-KFDGKVLTPES-AKYLLYRDGLLIFNASEA------DAGRYQCLSVEKS   71 (87)
T ss_pred             CeEEE-EECCEECCCCC-ceEEEECCcEEEeCCCHH------HCEEEEEEEEecc
Confidence            68999 99999986432 356677889999999766      9999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.05  E-value=2.5e-09  Score=60.18  Aligned_cols=60  Identities=12%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             CcEEEEEccCCeeeeccccceEE---ee-----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA---LS-----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~---~~-----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.++| ++||..+.... .++.   ..     .+.|.|.++..     ..|.|.|+|.|.|..|.... ..|.+.
T Consensus        37 ~p~i~W-~k~g~~l~~~~-~r~~~~~~~~~~~~~s~L~I~~v~~-----~~D~G~Y~C~A~N~~G~~~~~i~L~~~  105 (109)
T cd05773          37 RVQFRW-AKNGVPLDLGN-PRYEETTEHTGTVHTSILTIINVSA-----ALDYALFTCTAHNSLGEDSLDIQLVST  105 (109)
T ss_pred             CCEEEE-EECCEECCCCC-CeEEEEeeccCccceeEEEECcCCc-----cCCCEEEEEEEEeCCccCcEEEEEEec
Confidence            378999 88999885321 1221   11     24689998863     13999999999999998764 445444

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.03  E-value=1.6e-09  Score=58.87  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        55 ~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   83 (90)
T cd05858          55 EVLYLRNVTFE------DAGEYTCLAGNSIGISHH   83 (90)
T ss_pred             eEEEEccCCHH------HCEEEEEEEEeCCCcccc
Confidence            36999999766      999999999999998764

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.00  E-value=1.4e-09  Score=57.19  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=38.1

Q ss_pred             cEEEEEccCCeeeecc--ccceEEe----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYV--KDLRIAL----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~--~~~~~~~----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      |.++| +++|+++...  .+.++..    ..+.|.|.++..+      |+|.|+|.+.|..|...+
T Consensus        14 ~~~~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~a~N~~g~~~~   72 (76)
T cd05895          14 LRFKW-FKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLA------DNGEYKCMVSSKLGNDSV   72 (76)
T ss_pred             CceEE-EECCcccccCCCCCceEEEEeCCcEEEEEECcCCcc------cCEEEEEEEEeCCCceeE
Confidence            67899 8899888532  1222221    1246999999765      999999999999987653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.97  E-value=2.4e-09  Score=58.66  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             cEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      |.|+| +||++++...+ .+...  ..+.|.|.++..+      |+|.|+|.+.+.+|..
T Consensus        30 ~~v~W-YKd~~~l~~~~-~~~~~~~~~~~L~I~~v~~~------D~G~YtC~~~~~~~g~   81 (95)
T cd05897          30 VELQW-YKDSVLLDKDN-EKFYSLKGSTYLHIIDVSLN------DSGYYTCKLQFTHEGK   81 (95)
T ss_pred             CcEEE-ccCCEECcCCC-cceEecCCCCEEEEEEcChh------hCEEEEEEEEEeeCCE
Confidence            68999 99999886422 22222  2357999999766      9999999999997544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.97  E-value=5.1e-09  Score=57.36  Aligned_cols=54  Identities=26%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             CcEEEEEccCCeeeeccc---cceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK---DLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~---~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++..+....   ..++...    .+.|.|.++..+      |+|.|.|.|.|..|....
T Consensus        30 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~   90 (96)
T cd05732          30 IPEITW-RRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT------DAGRYDCEASNRIGGDQQ   90 (96)
T ss_pred             CCcEEE-EECCcccCCCCccccceEEEeCCccEEEEEECcCCcC------cCEEeEEEEEeCCCCcEE
Confidence            378999 77776654311   1122221    237999999766      999999999999998763

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.95  E-value=6.2e-09  Score=57.39  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=36.8

Q ss_pred             CcEEEEEcc-CCeeeecc---ccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIR-DNTVIAYV---KDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~-~g~~~~~~---~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+|++. +|..+...   .+.++...    ...|.|.++..+      |+|.|+|.|.|..|....
T Consensus        30 ~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~   92 (98)
T cd05870          30 IPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLS------DSGRYDCEAASRIGGHQK   92 (98)
T ss_pred             CCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcC------CCEEEEEEEeccCCccee
Confidence            378999433 45444321   11233222    247999999766      999999999999997764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.93  E-value=7.1e-09  Score=54.98  Aligned_cols=30  Identities=23%  Similarity=0.462  Sum_probs=26.0

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .+.|.|.++..+      |+|.|.|.|.|..|...+
T Consensus        46 ~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765          46 IGQLVIYNAQPQ------DAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             ccEEEEccCCcc------cCEEEEEEEecCCceEEE
Confidence            458999999766      999999999999998764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.91  E-value=8.7e-09  Score=56.82  Aligned_cols=54  Identities=19%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             c-EEEEEccCCeeeeccccceEEee-C-------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALS-N-------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~-~-------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      | .|.| ++++..+......++... .       +.|.|.++..+     .|.|.|.|.|.|..|...+
T Consensus        31 P~~v~W-~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~-----d~~G~Y~C~A~N~~G~~~~   93 (98)
T cd05758          31 PDRIVW-TWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQES-----DFQTSYNCTAWNSFGSGTA   93 (98)
T ss_pred             CCEeEE-EECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccc-----ccceeEEEEEEcCCCcccE
Confidence            5 5999 889988764322233221 1       26999999763     2699999999999998664

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.89  E-value=1.5e-08  Score=54.84  Aligned_cols=52  Identities=12%  Similarity=0.309  Sum_probs=37.6

Q ss_pred             cEEEEEccCCeeeeccc--cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~--~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      |.+.| ++++..+....  ..+.....+.|.|.++..+      |+|.|.|.+.+..+...
T Consensus        25 ~~i~W-~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~~~~~~   78 (89)
T cd04979          25 ASVVW-LFQGGPLQRKEEPEERLLVTEDGLLIRSVSPA------DAGVYTCQSVEHGFKQT   78 (89)
T ss_pred             ceEEE-EECCcccccccCcCceEEEcCCCEEEccCCHH------HCEEEEEEEecCcccee
Confidence            68999 88877665321  2344455567999999766      99999999998765444

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.86  E-value=5e-09  Score=57.47  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=37.6

Q ss_pred             CcEEEEEccCCeeeec-cccceEEee-CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          1 MYVLLWLIRDNTVIAY-VKDLRIALS-NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~-~~~~~~~~~-~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.+.| ++++.++.. ....+.... +|.|.|.++.++      |+|.|.|.|+|.....
T Consensus        33 ~p~~~W-~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~------D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          33 DLSYRW-LLNEFPNFIPEDGRRFVSQTNGNLYIAKVEAS------DRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CCEEEE-EECCcccccccCCCeEEeCCCCcEEEeecCHh------hCceeEEEEEecccCC
Confidence            378999 888876532 122233443 689999999766      9999999999986433

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.79  E-value=3.6e-08  Score=49.07  Aligned_cols=47  Identities=26%  Similarity=0.477  Sum_probs=35.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +.+.| ++++..+.  ........+..|.|.++..+      |+|.|+|.+.|..|
T Consensus        17 ~~v~W-~~~~~~~~--~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~g   63 (63)
T smart00408       17 PNITW-LKDGKPLP--ESNRLSASGSTLTIKSVSLE------DSGEYTCVAENSAG   63 (63)
T ss_pred             CeEEE-EECCEECC--CCCEEecCCcEEEEeeCCcc------cCEEEEEEEecCCC
Confidence            67999 77887765  22233344568999999665      99999999999764

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.76  E-value=2.4e-08  Score=62.95  Aligned_cols=52  Identities=17%  Similarity=0.468  Sum_probs=38.1

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~   60 (116)
                      |+|+| ++||+++....+......++.|.|.++..+      |+|.|+|.++..+ |...
T Consensus       164 p~I~W-yKng~~l~~~~r~~~~~~~~~L~I~~V~~~------DsG~YtC~a~~~~~g~~y  216 (227)
T PHA02826        164 YTLTW-YKNGNIVLYTDRIQLRNNNSTLVIKSATHD------DSGIYTCNLRFNKNSNNY  216 (227)
T ss_pred             ceEEE-EECCEECCCCCCEEEeCCCCEEEECcCCHH------hCEEEEEEEEEeECCEEE
Confidence            78999 999999864332222223458999999766      9999999999975 4433

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.75  E-value=5e-08  Score=52.21  Aligned_cols=53  Identities=15%  Similarity=0.089  Sum_probs=35.2

Q ss_pred             cEEEEEccCCeeeecc-c-c-ceE----EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYV-K-D-LRI----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~-~-~-~~~----~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      |.+.| ..+++.+... . . .+.    ......|.|.++..+      |+|.|.|.|.|..|...+
T Consensus        18 ~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742          18 VDFQW-TYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLK------DSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             EEEEE-ecCCcccCCceEeecccccccceEEEEEEEECCCChh------hCEEEEEEEccCCCceEE
Confidence            67999 6666544321 0 0 001    112237999999766      999999999999987664

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.73  E-value=1.2e-07  Score=50.42  Aligned_cols=53  Identities=17%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             CcEEEEEccCCeeeeccccce-EE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLR-IA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~-~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.|.| ++++..+....... ..  .....|.|.++..+      |+|.|.|.+.|..|...
T Consensus        23 ~~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~Y~C~~~n~~g~~~   78 (85)
T cd05729          23 RPTITW-LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPS------DSGKYTCIVENKYGSIN   78 (85)
T ss_pred             CCeEEE-EECCEECcccCceeEEEccCcEEEEEEeECCcc------cCEEEEEEEEECCceEE
Confidence            367999 88888765321111 11  11226888888655      99999999999998755

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.67  E-value=8.3e-08  Score=51.44  Aligned_cols=49  Identities=24%  Similarity=0.327  Sum_probs=36.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      |.+.| ++++..+..    +....++.|.|.++..+      |+|.|.|.|.|..|...+
T Consensus        32 ~~i~W-~~~~~~~~~----~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754          32 YTLVW-TRVGGGLPS----RAMDFNGILTIRNVQLS------DAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             cEEEE-EECCCcCCC----cccccCCEEEECCCCHH------HCEEEEEEEeccCCeEeE
Confidence            68999 677655432    12234568999999766      999999999999987765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.63  E-value=2.1e-07  Score=51.59  Aligned_cols=51  Identities=20%  Similarity=0.375  Sum_probs=37.4

Q ss_pred             EEEEEccCCeeeec-c----ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          3 VLLWLIRDNTVIAY-V----KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         3 ~v~W~~~~g~~~~~-~----~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|+| +|++..+.. .    .+.|....+..|.|.++..+      |+|.|.|.+.|.-....
T Consensus        42 ~v~W-yK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~e------DSG~Y~C~~rN~t~C~~   97 (104)
T cd05896          42 SLMW-YKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQ------DSGLYTCVLRNSTYCMK   97 (104)
T ss_pred             eEEE-EECCCCCCCCCcccccceeEEEeCCEEEEEeCChh------hCeEEEEEECCCCcceE
Confidence            6899 778654432 1    12366677889999999766      99999999999864433

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.63  E-value=8.7e-08  Score=51.30  Aligned_cols=50  Identities=26%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      +.+.| +++|..+..      ...+..|.|.+++.+      |+|.|.|.+.+..|...+..+
T Consensus        30 ~~~~w-~k~g~~~~~------~~~~~~l~I~~~~~~------dsG~Y~C~~~~~~~~~~s~~~   79 (83)
T cd05753          30 YKVTY-YRDGKAKKY------SHSNSNLSIPQATLS------DSGSYHCSGIIGSYDYSSEPV   79 (83)
T ss_pred             eEEEE-EECCeEccc------cCCCceEEECccCHH------HCEEEEEEEEeCCceecCCCE
Confidence            46889 788876531      112457999999766      999999999999986666433

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.62  E-value=2.9e-07  Score=50.11  Aligned_cols=53  Identities=17%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             cEEEEEcc-CCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEc-CCCceE
Q psy11568          2 YVLLWLIR-DNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVIL   60 (116)
Q Consensus         2 p~v~W~~~-~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~   60 (116)
                      |.|+|++. +|.....  ....+....++.|.|.++.++      |+|.|+|.+.+ ..+...
T Consensus        25 p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~a~~~~~~~~~   81 (91)
T cd05871          25 ASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRS------DAGVYTCTAVEHSFSQTL   81 (91)
T ss_pred             ceEEEEEECCCCCccccccccccEEEecCeEEEeeCChh------HCEEEEEEEEccCCeEEE
Confidence            78999432 3322211  112345556678999999766      99999999984 555333

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.61  E-value=2.9e-07  Score=50.52  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CcEEEEEccCCeeeec------cccceEEee-----CCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          1 MYVLLWLIRDNTVIAY------VKDLRIALS-----NGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~------~~~~~~~~~-----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.| ++++..+..      ..+.|+...     +..|.|.++..+      |+|.|+|.+....
T Consensus        26 ~~~v~W-~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~------D~G~YtC~~~t~~   85 (95)
T cd05882          26 NSSLQW-SNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLS------DEGEYTCSIFTMP   85 (95)
T ss_pred             CCeEEE-eccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcc------cCEEEEEEEEeec
Confidence            378999 666553311      112233221     247999999766      9999999999843

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.61  E-value=8.5e-08  Score=52.52  Aligned_cols=49  Identities=24%  Similarity=0.425  Sum_probs=35.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEe-eCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL-SNGSLMFPPFPETGFRPDVHST-VYRCRASNEAG   57 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g   57 (116)
                      .|.|.| ++++...... +.|+.. .+|.|.|+++..+      |+| .|.|.|.|...
T Consensus        33 ~P~i~W-~~~~~~~i~~-~~Ri~~~~~GnL~fs~v~~~------D~g~~Y~C~a~~~~~   83 (95)
T cd05845          33 PLRIYW-MNSDLLHITQ-DERVSMGQNGNLYFANVEEQ------DSHPDYICHAHFPGL   83 (95)
T ss_pred             CCEEEE-ECCCCccccc-cccEEECCCceEEEEEEehh------hCCCCeEEEEEcccc
Confidence            389999 5665443222 334443 5689999999766      999 89999999863

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.51  E-value=3.8e-07  Score=49.32  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ .+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus         2 p~i~~~~-~~~~~~~G~~v~l~C~~~G~P~P~v~W~   36 (88)
T cd05851           2 ADINVKF-KDTYALKGQNVTLECFALGNPVPVIRWR   36 (88)
T ss_pred             CceEEcc-ccEEEeCCCcEEEEEEecccCCCEEEEE
Confidence            6777776 7788899999999999999999999997

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.51  E-value=2.9e-07  Score=48.84  Aligned_cols=52  Identities=23%  Similarity=0.325  Sum_probs=35.5

Q ss_pred             CcEEEEEccCCeeeeccc----cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          1 MYVLLWLIRDNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~----~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      +|+|+| ++||+++....    ..+.....+.|.+...+.+      |.+.|+|.|.|..+..
T Consensus        14 ~a~i~W-~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~D------dg~~~~C~A~n~a~~~   69 (80)
T cd05885          14 AATLRW-YRDRKELKGVISQQENGKTVSVSNTIRFPVDRKD------DGAILSCEASHPALVS   69 (80)
T ss_pred             CCeEEE-EECCEECCCCcccccCCceEEEEEEEEEEeeecc------CCcEEEEEEEChhhCC
Confidence            478999 99999996422    1111112335777766544      9999999999997643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.49  E-value=2.5e-07  Score=48.99  Aligned_cols=38  Identities=16%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      +.+.| ++||..+..        .++.|.|.++ .+      |+|.|+|.|.|.
T Consensus        31 ~~~~W-~kng~~l~~--------~~~~l~i~~~-~~------dsG~Y~C~a~~~   68 (78)
T cd05752          31 NSTQW-YHNGKLLET--------TTNSYRIRAA-NN------DSGEYRCQTQGS   68 (78)
T ss_pred             ccEEE-EECCEEeec--------cCCeEEEeec-cc------CCEEeEEECCCC
Confidence            35899 999987631        3557889888 66      999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.47  E-value=2.2e-06  Score=45.87  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      ..|.|.++..+      |+|.|.|.|.|..+
T Consensus        46 s~L~I~~~~~~------DsG~Y~C~a~n~~~   70 (84)
T cd05861          46 STLTFPHATVE------DSGTYECAAHESTQ   70 (84)
T ss_pred             EEEEECCCCcC------CCEEEEEEEEECcc
Confidence            37999999665      99999999999865

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.44  E-value=4.6e-07  Score=45.78  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=27.6

Q ss_pred             cEEEEEccCCeeeeccccceEEee-CCe----EEecCCCCCCCCCCCCceEEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS-NGS----LMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~-~~~----l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      +.++| .+++..+..... ..... +..    |.|.++..+      |+|.|+|.+
T Consensus        17 ~~~~W-~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~v   64 (64)
T PF00047_consen   17 TTVTW-SKNGQSLPEGST-TNRSTNSVSSTSRLTISNVTPE------DSGTYTCVV   64 (64)
T ss_dssp             SEEEE-EETTTTTSEEEE-EEEEETTTEEEEEEEESSCTGG------GTEEEEEEE
T ss_pred             cEEEE-EECCccccCcce-eEeecccceeeeEEEEccCCHH------HCEEEEEEC
Confidence            67899 666655432111 11222 222    999999766      999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.36  E-value=4.4e-06  Score=45.82  Aligned_cols=26  Identities=12%  Similarity=0.077  Sum_probs=21.5

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      ..|.|.++..+      |+|.|.|.+.+..+.
T Consensus        62 ~sL~I~~v~~~------DsG~Y~C~~~t~~~~   87 (95)
T cd07701          62 LSISISDVSLS------DEGQYTCSLFTMPVK   87 (95)
T ss_pred             EEEEECcCCcc------cCEEEEEEeEeecCc
Confidence            37999999766      999999999986444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.34  E-value=1.2e-06  Score=47.96  Aligned_cols=36  Identities=36%  Similarity=0.701  Sum_probs=32.0

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus         2 P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k   37 (100)
T cd07693           2 PRIVEHP-SDLIVSKGDPATLNCKAEGRPTPTIQWLK   37 (100)
T ss_pred             CeEEecC-ceeEEcCCCeEEEEeeCCcCCCCEEEEEE
Confidence            6777776 78889999999999999999999999973

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.34  E-value=3.5e-06  Score=45.28  Aligned_cols=49  Identities=20%  Similarity=0.389  Sum_probs=36.1

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +++.| +.+|.++..  +.+.......|.|.++..+      |+|.|.|.+. ..|...
T Consensus        25 A~v~W-~~ng~~l~~--~~r~~~~~~GLlI~~~~~~------dsG~Y~C~s~-E~gf~~   73 (85)
T cd05872          25 ASPVW-LFNGTPLNA--QFSYRVGTDGLLILVTSPE------HSGTYRCYSE-EEGFQQ   73 (85)
T ss_pred             ccEEE-EECCcccCC--CcceEEeCCCCEEEECCHh------hCEEEEEEEe-cCCCeE
Confidence            57899 999888753  3455656667889999655      9999999987 344444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.32  E-value=4.7e-06  Score=44.28  Aligned_cols=48  Identities=29%  Similarity=0.515  Sum_probs=29.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC-------eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG-------SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~-------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.|+| +++|+++...........++       .|.+.....      .|.|.|+|.+.|..
T Consensus        15 ~~v~W-~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~------~~~~~y~C~a~n~~   69 (82)
T cd05759          15 AEIIW-FRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH------DTGRTFTCRARNEA   69 (82)
T ss_pred             CEEEE-EECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee------cCCCEEEEEEcCcc
Confidence            68999 88999875421111112222       355554433      37889999999975

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.30  E-value=8.2e-06  Score=44.55  Aligned_cols=25  Identities=12%  Similarity=0.143  Sum_probs=21.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|.|.++..+      |+|.|.|.+.+....
T Consensus        63 ~L~I~~v~~~------DsG~Y~C~~~~~~~~   87 (95)
T cd05717          63 SISISNVSLS------DEGRYTCSLYTMPVQ   87 (95)
T ss_pred             EEEEccCCcc------cCEEEEEEEecCCCc
Confidence            6999999766      999999999987643

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.28  E-value=1.6e-06  Score=46.21  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=26.1

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      .+..+..|+.+.|.|.+.|.|.| .|+|+
T Consensus         6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~   34 (81)
T cd05749           6 EDLSVTANTPFNLTCQAVGPPEPVEILWW   34 (81)
T ss_pred             CceEEcCCCCEEEEEEeeeecCCeEEEEE
Confidence            67888999999999999999999 79997

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>smart00409 IG Immunoglobulin

Probab=98.28  E-value=1.4e-05  Score=41.74  Aligned_cols=53  Identities=21%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             cEEEEEccC-CeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRD-NTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~-g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +.+.| +++ +..+....+......+  ..|.|.++...      |+|.|.|.+.+..+....
T Consensus        24 ~~~~W-~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00409       24 PEVTW-YKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASS   79 (86)
T ss_pred             CeEEE-EECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEE
Confidence            57899 665 7766522222222222  47999999766      999999999988766553

>smart00410 IG_like Immunoglobulin like

Probab=98.28  E-value=1.4e-05  Score=41.74  Aligned_cols=53  Identities=21%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             cEEEEEccC-CeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRD-NTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~-g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +.+.| +++ +..+....+......+  ..|.|.++...      |+|.|.|.+.+..+....
T Consensus        24 ~~~~W-~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00410       24 PEVTW-YKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASS   79 (86)
T ss_pred             CeEEE-EECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEE
Confidence            57899 665 7766522222222222  47999999766      999999999988766553

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.26  E-value=1.7e-06  Score=46.82  Aligned_cols=31  Identities=35%  Similarity=0.754  Sum_probs=27.2

Q ss_pred             CCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         86 PPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        86 ~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ++....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~   36 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWII   36 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEE
Confidence            3466778899999999999999999999973

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.26  E-value=2.5e-06  Score=46.36  Aligned_cols=36  Identities=22%  Similarity=0.640  Sum_probs=31.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.++..| ....+.+|+.+.|.|.+.|.|.|.+.|+.
T Consensus         4 ~~~~~~p-~~~~~~~G~~~~L~C~~~g~P~p~v~W~k   39 (92)
T cd05747           4 ATILTKP-RSLTVSEGESARFSCDVDGEPAPTVTWMR   39 (92)
T ss_pred             CcccccC-ccEEEeCCCcEEEEEEEeecCCCEEEEEE
Confidence            6666666 78899999999999999999999999973

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.26  E-value=2.3e-06  Score=46.06  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=29.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus         2 ~~~~~~p-~~~~~~~g~~v~l~C~~~g~P~p~v~W~k   37 (88)
T cd04968           2 SIIVVFP-KDTYALKGQNVTLECFALGNPVPQIKWRK   37 (88)
T ss_pred             CcEEECC-CceEEeCCCcEEEEEEeeEeCCCEEEEEE
Confidence            3444444 77888899999999999999999999973

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.25  E-value=5.2e-06  Score=44.67  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=24.1

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      ..|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        50 s~L~I~~~~~~------DsG~Y~C~a~n~~~~~~~   78 (86)
T cd05862          50 STLTIENVTLS------DLGRYTCTASSGQMIAKN   78 (86)
T ss_pred             eEEEEecCCcc------cCEEEEEEEeecceEecc
Confidence            47999999766      999999999998875553

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.23  E-value=3.5e-06  Score=46.46  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|+..+ ....+..|+.+.|.|.+.|.|+|.+.|+
T Consensus         1 p~~~~~p-~~~~v~~G~~v~l~C~~~G~p~p~v~W~   35 (98)
T cd05762           1 PQIIQFP-EDMKVRAGESVELFCKVTGTQPITCTWM   35 (98)
T ss_pred             CceEECC-cCEEEECCCEEEEEEEEcccCCCceEEE
Confidence            4455565 7888999999999999999999999997

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.16  E-value=1.6e-05  Score=41.51  Aligned_cols=48  Identities=29%  Similarity=0.456  Sum_probs=32.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      +.+.| ++++..+...        .+.+.+.++..+      |+|.|+|.+.+..+...+..+
T Consensus        29 ~~~~w-~~~~~~~~~~--------~~~~~~~~~~~~------~~g~y~C~~~~~~~~~~s~~~   76 (80)
T PF13895_consen   29 PQVQW-YKNGSPINSS--------QNGLFIPNVSPE------DSGNYTCRASNGSGSNTSTSV   76 (80)
T ss_dssp             SEEEE-EETTEEEEEE--------SSEEEESSEEGG------GTEEEEEEEEETTEEEEEEEE
T ss_pred             eeeee-eeeeeeeeee--------eeeeeeeeeccc------cCEEEEEEEEeCCCCeEeeeE
Confidence            57889 6777766521        122667777655      999999999997765554433

...

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.15  E-value=5.7e-06  Score=45.24  Aligned_cols=35  Identities=40%  Similarity=0.804  Sum_probs=27.7

Q ss_pred             CceEecCCCeEEEe---CCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFS---NESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~---~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|+..| .+..+.   +|+.+.|.|.+.|.|.|.++|+
T Consensus         2 P~f~~~p-~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~   39 (94)
T cd05848           2 PVFVQEP-DDAIFPTDSDEKKVILNCEARGNPVPTYRWL   39 (94)
T ss_pred             CeeEECC-CcEEccCCCCCCEEEEEEEeeecCCCEEEEE
Confidence            6676666 444443   4789999999999999999997

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.14  E-value=4.9e-06  Score=44.72  Aligned_cols=36  Identities=25%  Similarity=0.689  Sum_probs=31.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...+ ....+.+|+++.|.|.+.|.|.|.+.|++
T Consensus         1 P~~~~~~-~~~~v~~G~~~~l~c~~~~~p~~~v~W~~   36 (90)
T PF07679_consen    1 PVFTKKP-KDVTVKEGESVTLECEVSGNPPPTVTWYK   36 (90)
T ss_dssp             EEEEEES-SEEEEETTSEEEEEEEEEESSSSEEEEEE
T ss_pred             CEEEEec-CCEEEeCCCEEEEEEEEEeCCCCcccccc
Confidence            4555666 88999999999999999999999999973

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.13  E-value=1.6e-05  Score=43.81  Aligned_cols=53  Identities=21%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             EEEEEccCCeeeeccccceEEe-----eC---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIAL-----SN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~-----~~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.| ..++..+......++..     .+   ..|.|.++.+.     .+.|.|.|.|.|.+|....
T Consensus        33 ~i~W-~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~-----d~~g~Y~C~a~N~~G~d~~   93 (98)
T cd05898          33 RIAW-AWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEA-----DFQTHYNCTAWNSFGSGTA   93 (98)
T ss_pred             EEEE-EEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccc-----cCCcEEEEEEEeCCccceE
Confidence            4688 55555654322223322     11   26999999654     1489999999999998764

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.13  E-value=6.8e-06  Score=45.19  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=29.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+. .+ .+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus         3 p~i~-~~-~~~~~~~G~~v~l~C~~~G~P~p~i~W~   36 (98)
T cd05870           3 PHII-QL-KNETTVENGAATLSCKAEGEPIPEITWK   36 (98)
T ss_pred             CEEE-ee-ccEEEcCCCcEEEEEecccCCCCeEEEE
Confidence            5553 34 6788899999999999999999999997

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.11  E-value=8.3e-06  Score=41.97  Aligned_cols=25  Identities=32%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             eeCCeEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         24 LSNGSLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        24 ~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      ..++.|.|.++..+      |.|.|+|.|.|
T Consensus        51 ~~~~~L~i~~v~~~------~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRS------DNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGG------GTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHH------hCcEEEEEEEC
Confidence            34558999999766      99999999987

...

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.10  E-value=9.1e-06  Score=44.15  Aligned_cols=31  Identities=26%  Similarity=0.556  Sum_probs=27.2

Q ss_pred             CCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         86 PPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        86 ~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .+....+.+|+++.|.|.+.|.|.|.++|+.
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k   37 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLK   37 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEE
Confidence            3466788899999999999999999999973

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.09  E-value=5.5e-06  Score=44.39  Aligned_cols=28  Identities=36%  Similarity=0.624  Sum_probs=26.3

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+..+..|+.+.|.|.+.|.|.|.++|+
T Consensus         7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~   34 (85)
T cd05728           7 SDTEADIGSSLRWECKASGNPRPAYRWL   34 (85)
T ss_pred             CccEEcCCCcEEEEEEeeEeCCCEEEEE
Confidence            6788889999999999999999999996

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.09  E-value=8e-06  Score=44.64  Aligned_cols=36  Identities=28%  Similarity=0.626  Sum_probs=28.1

Q ss_pred             CceEecCCCeEEEeCC---CcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNE---SGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g---~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...| ....+.+|   +++.|.|.+.|.|.|.++|++
T Consensus         2 P~f~~~P-~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~   40 (94)
T cd05850           2 PVFEEQP-SSLLFPEGSPEEKVTLGCRARASPPATYRWKM   40 (94)
T ss_pred             CeeEECC-CCEEecCCCCCCeEEEEeEceeCCCCEEEEEE
Confidence            5666665 56655555   579999999999999999973

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.06  E-value=1.1e-05  Score=44.10  Aligned_cols=35  Identities=26%  Similarity=0.637  Sum_probs=26.4

Q ss_pred             CceEecCCCeEEEeC---CCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSN---ESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~---g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|...| ....+.+   |..+.|.|.+.|.|.|.++|+
T Consensus         2 P~f~~~P-~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~   39 (93)
T cd05849           2 PVFEEQP-IDTIYPEESTEGKVSVNCRARANPFPIYKWR   39 (93)
T ss_pred             CEEEECC-CCEEecCCccCCeEEEeCcCccCCCCEEEEE
Confidence            5566555 4444443   347999999999999999997

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.04  E-value=1.2e-05  Score=43.89  Aligned_cols=33  Identities=39%  Similarity=0.694  Sum_probs=28.0

Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |...| ....+.+|+++.|.|.+.|.|.|.++|+
T Consensus         2 f~~~P-~~~~~~~g~~v~l~C~v~g~P~p~i~W~   34 (95)
T cd05722           2 FLSEP-SDIVAVRGGPVVLNCSAEGEPPPKIEWK   34 (95)
T ss_pred             cEECC-CCeEEcCCCCEEEeeecccCCCCEEEEE
Confidence            34455 6677788999999999999999999997

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PHA03376 BARF1; Provisional

Probab=98.03  E-value=3.4e-05  Score=47.15  Aligned_cols=71  Identities=20%  Similarity=0.356  Sum_probs=42.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      +|.|.+++.+      |.|.|+|.......... ...+.+..+..          +.+.. ....+...+...+.|.+.|
T Consensus        88 sLvI~~l~lS------DdGtY~C~fQkge~~~~k~ehLt~V~~~~----------Lsv~a-~~~dFp~~~~~~i~C~sgg  150 (221)
T PHA03376         88 FLVVTAANIS------HDGNYLCRMKLGETEVTKQEHLSVVKPLT----------LSVHS-ERSQFPDFSVLTVTCTVNA  150 (221)
T ss_pred             EEEEEeeeec------CCceEEEEEEcCCCceeeeeeeeeeecce----------EEEEe-ccccCCCCCeeEEEEecCC
Confidence            6888999655      99999999877643222 22222211100          11111 1111122567788899888


Q ss_pred             cCCceeEEe
Q psy11568        107 SPTPKIEWL  115 (116)
Q Consensus       107 ~P~p~i~W~  115 (116)
                      -|.|.++|.
T Consensus       151 fP~P~~~Wl  159 (221)
T PHA03376        151 FPHPHVQWL  159 (221)
T ss_pred             cCCchheec
Confidence            999999995

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.01  E-value=9.7e-05  Score=41.27  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=24.9

Q ss_pred             EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      ...+++|.|.++++.      |+|.|.|.+.+....
T Consensus        66 ~~~ngSL~I~~v~~~------D~G~Y~~~v~~~~~~   95 (105)
T cd05774          66 IYPNGSLLIQNVTQK------DTGFYTLQTITTNFQ   95 (105)
T ss_pred             EeCCCcEEEecCCcc------cCEEEEEEEEeCCcc
Confidence            455789999999766      999999999988643

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.97  E-value=2.3e-05  Score=43.03  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEeC
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWLI  116 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~~  116 (116)
                      .++..+ ....+..|+.+.|.|.+.|.|.| .++|+.
T Consensus         3 p~i~~~-~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~   38 (98)
T cd05758           3 PIITSE-ATQYAILGDKGRVECFIFSTPPPDRIVWTW   38 (98)
T ss_pred             CeEcCC-CcEEEeCCCcEEEEEEEcccCCCCEeEEEE
Confidence            333444 56677889999999999999999 599963

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.97  E-value=1.7e-05  Score=42.64  Aligned_cols=28  Identities=25%  Similarity=0.499  Sum_probs=25.1

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~   30 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWS   30 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEE
Confidence            3566788999999999999999999996

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.97  E-value=2.4e-05  Score=42.89  Aligned_cols=35  Identities=29%  Similarity=0.513  Sum_probs=27.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus         3 p~i~~~~-~~~~~~~g~~v~l~C~~~G~P~P~v~W~   37 (97)
T cd05869           3 PKITYVE-NQTAMELEEQITLTCEASGDPIPSITWR   37 (97)
T ss_pred             ceEEEcc-CceEEEcCCCEEEEEEeeEeCCCEEEEE
Confidence            5555554 3445556899999999999999999997

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.96  E-value=1.8e-05  Score=43.30  Aligned_cols=25  Identities=16%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|.|.++..+      |+|+|.|.+.|..+.
T Consensus        66 ~L~I~~l~~s------DsgtY~C~v~~~~~~   90 (94)
T cd07690          66 PLIIKNLKIE------DSDTYICEVEDKKEE   90 (94)
T ss_pred             EEEECCCCHH------HCEEEEEEECCccce
Confidence            5999999766      999999999998653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.92  E-value=0.00022  Score=39.13  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      .+|.|.+++.+      |+|.|.|...+..|.....
T Consensus        61 ~sL~I~~~~~~------DsG~Y~c~v~~~~~~~~~~   90 (97)
T cd05775          61 YSLQISNLKME------DAGSYRAEINTKNGVTITK   90 (97)
T ss_pred             eeEEECCCchH------HCEEEEEEEEcCCCCeEEE
Confidence            47999999766      9999999999887766543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.89  E-value=0.00026  Score=38.14  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568         25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus        25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .+++|.|.+++.+      |+|.|.|......+....
T Consensus        55 ~~~sL~I~~l~~~------DsG~Y~c~v~~~~~~~~~   85 (92)
T cd05741          55 PNGSLLIQNLTKE------DSGTYTLQIISTNGVTEN   85 (92)
T ss_pred             CCceEEEccCCch------hcEEEEEEEEcCCCcEEE
Confidence            4568999999766      999999999988755443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.86  E-value=3.5e-05  Score=41.98  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=28.4

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+. .+ .+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus         3 P~i~-~~-~~~~~~~g~~v~l~C~~~g~p~p~v~W~   36 (96)
T cd05732           3 PKIT-YL-ENQTAVELEQITLTCEAEGDPIPEITWR   36 (96)
T ss_pred             ccce-ec-CceeEecCCcEEEEEEEeEcCCCcEEEE
Confidence            5553 33 5677889999999999999999999997

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.86  E-value=3.4e-05  Score=42.01  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=25.3

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+..|+++.|.|.+.|.|.|.++|+
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~   38 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWT   38 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEE
Confidence            4557788999999999999999999997

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.81  E-value=0.00014  Score=39.92  Aligned_cols=27  Identities=11%  Similarity=0.132  Sum_probs=22.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +|.|.++..+      |+|.|.|.+.+..+...
T Consensus        66 sL~I~~v~~~------D~G~Y~C~v~~~~~~~~   92 (100)
T cd05713          66 ALRIHNVRAS------DEGLYTCFFQSDGFYEE   92 (100)
T ss_pred             EEEEEcCChh------hCEEEEEEEecCCcEEE
Confidence            6999999766      99999999998766533

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.77  E-value=0.0003  Score=38.95  Aligned_cols=58  Identities=19%  Similarity=0.142  Sum_probs=36.6

Q ss_pred             cE-EEEEccCCeeeeccccceEEee-------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEE
Q psy11568          2 YV-LLWLIRDNTVIAYVKDLRIALS-------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV   66 (116)
Q Consensus         2 p~-v~W~~~~g~~~~~~~~~~~~~~-------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v   66 (116)
                      |+ +.| .+++..+...........       ...|.|.+++.+      |+|.|+|.|.|...... ++.|.|
T Consensus        33 p~~~~W-~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~------E~G~YTf~a~N~~~~~s~tF~l~v   99 (101)
T cd05860          33 PEHQQW-IYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGT------EGGTYTFLVSNSDASASVTFNVYV   99 (101)
T ss_pred             CeeeEE-EcCCcccCccccceeEEeccCceEEEEEEEEeecChh------hCcEEEEEEECCCCeEEEEEEEEE
Confidence            44 899 777766543211111111       125888888666      99999999999986655 354443

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.76  E-value=0.00047  Score=37.61  Aligned_cols=29  Identities=10%  Similarity=0.184  Sum_probs=22.3

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEc-CCCceEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVILS   61 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~~   61 (116)
                      ..|.|.++..+      |+|.|.|...+ ..|....
T Consensus        62 ~sL~I~~v~~~------D~G~Y~C~v~~~~~g~~~~   91 (98)
T cd05718          62 ATISISNLRLE------DEGNYICEFATFPQGNRQK   91 (98)
T ss_pred             eEEEEccCCcc------cCEEEEEEEEeCCCCcEEE
Confidence            37999999766      99999999876 3455443

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.74  E-value=5.9e-05  Score=41.02  Aligned_cols=29  Identities=24%  Similarity=0.593  Sum_probs=26.2

Q ss_pred             CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         87 PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        87 ~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~   36 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWF   36 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEE
Confidence            35678889999999999999999999997

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.74  E-value=5.4e-05  Score=40.28  Aligned_cols=27  Identities=30%  Similarity=0.731  Sum_probs=24.3

Q ss_pred             eEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ...+.+|+.+.|.|.+.|.|.|.++|+
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~   29 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWL   29 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEE
Confidence            356778999999999999999999997

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=97.71  E-value=7.3e-05  Score=41.06  Aligned_cols=28  Identities=21%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPT-PKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~-p~i~W~  115 (116)
                      ....+..|+++.|.|.+.|.|. |.++|+
T Consensus         8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~   36 (96)
T cd05865           8 SQGEISVGESKFFLCQVAGEAKDKDISWF   36 (96)
T ss_pred             CccEECCCCeEEEEEEEeCCCCCCEEEEE
Confidence            4557788999999999999995 799997

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.68  E-value=9.2e-05  Score=41.06  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             CeEEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g-~P~p~i~W~  115 (116)
                      ....+.+|+.+.|.|.+.| .|+|.++|+
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~   39 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWT   39 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEE
Confidence            5778889999999999999 999999997

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.67  E-value=0.00062  Score=37.42  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILS   61 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~   61 (116)
                      +.+|.|.+++.+      |+|.|.|...+- .|...+
T Consensus        59 d~sl~i~nv~~~------D~G~Y~C~v~tfP~G~~~~   89 (96)
T cd05887          59 DATIMLENVGFS------DIGVYICKAVTFPLGNTQS   89 (96)
T ss_pred             ccEEEEeCCCcc------ccEEEEEEEEeCCCCCeeE
Confidence            458999999766      999999997665 566554

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.66  E-value=0.00023  Score=39.33  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=22.7

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVIL   60 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~   60 (116)
                      .+|.|.+++.+      |+|.|.|...+. .|...
T Consensus        63 aSi~i~nl~~~------D~G~Y~C~v~t~P~g~~~   91 (99)
T cd05886          63 GTISLSRLELE------DEGVYICEFATFPTGNRE   91 (99)
T ss_pred             ceEEEcCCccc------cCEEEEEEEEeCCCCCeE
Confidence            57999999766      999999999994 55433

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.64  E-value=0.00015  Score=39.25  Aligned_cols=36  Identities=39%  Similarity=0.821  Sum_probs=26.3

Q ss_pred             CceEecCCCeEEEeC---CCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSN---ESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~---g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...| ....+..   |+++.|.|.+.|.|.|.++|+.
T Consensus         2 P~f~~~p-~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k   40 (91)
T cd04967           2 PVFEEQP-DDTIFPEESDEGKVSLNCRARGSPPPTYRWLM   40 (91)
T ss_pred             CeeEeCC-CCEEccCCCCCCEEEEEEeeeEcCCCEEEEEE
Confidence            5555555 4444333   4679999999999999999973

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.64  E-value=0.00012  Score=40.16  Aligned_cols=28  Identities=11%  Similarity=0.264  Sum_probs=25.8

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+..+..|+++.|.|.+.+.|.|.+.|+
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~   32 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWS   32 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEe
Confidence            5678889999999999999999999995

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.64  E-value=0.0001  Score=39.20  Aligned_cols=29  Identities=21%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             CeEEEeCCCcEEEEeee-cCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAA-QGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~-~g~P~p~i~W~~  116 (116)
                      ....+.+|+++.|.|.+ .|.|.|.+.|+.
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k   33 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRK   33 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEE
Confidence            56778889999999998 799999999973

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.62  E-value=0.00013  Score=39.98  Aligned_cols=28  Identities=11%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ++..+.+|+++.|.|.+.+.|.|.+.|+
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~   32 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWS   32 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEe
Confidence            6788899999999999999999999996

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.55  E-value=0.0022  Score=35.21  Aligned_cols=29  Identities=24%  Similarity=0.271  Sum_probs=22.7

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVIL   60 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~   60 (116)
                      +.+|.|.+++.+      |+|.|+|...+. .|...
T Consensus        59 d~sI~i~nvt~~------D~G~Y~C~~~t~P~g~~~   88 (96)
T cd05889          59 DMSLSFNNATEE------DVGLYCCSLVTYPQGSWE   88 (96)
T ss_pred             ccEEEEcCCCcc------cCEEEEEEEEeCCCCCeE
Confidence            357999999766      999999998776 45443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.53  E-value=0.00038  Score=38.67  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK   67 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~   67 (116)
                      .|.|.+++.+      |+|.|.|.+.+..+... ...|.|.
T Consensus        69 sL~I~~v~~s------D~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          69 SLVITDLRLE------DSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             eEEECCCCHH------HCEEEEEEEEcCCCceEEEEEEEEE
Confidence            7999999766      99999999998765443 2444444

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.52  E-value=0.0009  Score=36.92  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=22.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcC-CCce
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVI   59 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~   59 (116)
                      ..|.|.+++.+      |+|.|.|...+. .|..
T Consensus        64 ~sL~I~nv~~s------D~GtY~C~v~~~p~g~~   91 (100)
T cd05888          64 GALILRNAVQA------DEGKYKCRVITFPAGNF   91 (100)
T ss_pred             eEEEEecCccc------cceEEEEEEEeCCCCCe
Confidence            37999999766      999999999884 5544

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.52  E-value=0.00022  Score=39.09  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=28.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEee-ecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCA-AQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~-~~g~P~p~i~W~  115 (116)
                      |.|.....+...+.+|+.+.|.|. ..|.|.|.+.|+
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~   39 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWM   39 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEE
Confidence            334333346788899999999996 699999999996

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.52  E-value=0.0013  Score=35.08  Aligned_cols=49  Identities=14%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC-----CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~-----~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .++|+| +++|+++............     +.|.+. +.++     .|...|+|.|.|..
T Consensus        14 ~A~I~W-~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~-p~~e-----DdG~~~~C~a~~~~   67 (82)
T cd05883          14 AATIRW-FKGNKELTGKSTVEETWSRMFTVTSQLMLK-VTKE-----DDGVPVICLVDHPA   67 (82)
T ss_pred             CCEEEE-EECCEECcCcccceeccCCCcEEEEEEEEE-Cchh-----hCCCEEEEEEcCcc
Confidence            378999 9999988642111101111     135553 3333     37789999999975

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.52  E-value=0.00033  Score=38.91  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=26.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|.++..+      |+|.|.|...+..+.... ..|.|.
T Consensus        69 sL~I~~v~~~------DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          69 SLVITDLRLE------DYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEccCChH------HCEEEEEEEEecccceEEEEEEEEE
Confidence            6999999665      999999999988776553 455554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.50  E-value=0.00015  Score=38.13  Aligned_cols=26  Identities=42%  Similarity=0.808  Sum_probs=22.9

Q ss_pred             EEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         90 FEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .....|+.+.|.|.+.|.|.|.++|+
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~   29 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWL   29 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEE
Confidence            34566999999999999999999997

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.49  E-value=0.00037  Score=36.76  Aligned_cols=29  Identities=17%  Similarity=0.257  Sum_probs=24.9

Q ss_pred             CeEEEeCCCcEEEEeeecCcCC-ceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPT-PKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~-p~i~W~~  116 (116)
                      ....+.+|+++.|.|.+.+.|. +.+.|+.
T Consensus         8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k   37 (78)
T cd05752           8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYH   37 (78)
T ss_pred             CCeEeeCCCCEEEEEeCCCCCCCccEEEEE
Confidence            6778889999999999999886 4699973

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.47  E-value=0.00043  Score=36.86  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             CCCeEEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568         86 PPYRFEFSNESGGRLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        86 ~~~~~~~~~g~~~~l~C~~~g-~P~p~i~W~  115 (116)
                      ++....+..|+++.|.|.+.+ .|.|.+.|+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~   37 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWT   37 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEE
Confidence            346778888999999999975 789999996

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.45  E-value=0.0017  Score=35.58  Aligned_cols=23  Identities=9%  Similarity=0.239  Sum_probs=19.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +|.|.++..+      |+|.|.|.+....
T Consensus        63 tL~I~~vq~~------D~G~Y~Cqv~t~p   85 (95)
T cd05881          63 RVSLSNVSLS------DEGRYFCQLYTDP   85 (95)
T ss_pred             EEEECcCCcc------cCEEEEEEEEccc
Confidence            5999999666      9999999998754

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.44  E-value=0.00024  Score=39.36  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=25.1

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+..|+.+.|.|.+.|.|+|.++|+
T Consensus        11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~   38 (101)
T cd05859          11 QLEFANLHEVKEFVVEVEAYPPPQIRWL   38 (101)
T ss_pred             ceEEEecCCcEEEEEEEEEeCCCceEEE
Confidence            3567778999999999999999999997

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.41  E-value=0.001  Score=35.34  Aligned_cols=48  Identities=21%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             cEEEEEccCCeeeeccccceEEe-eCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL-SNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~-~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +.|+| +++|+++.... ..... .++      .|.+....      ..+.+.|+|.+.+...
T Consensus        15 ~~v~W-~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~------~d~g~~~~C~v~h~~l   69 (82)
T cd05761          15 ATIRW-FKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDR------EDDGAPIICRVDHPAL   69 (82)
T ss_pred             CeEEE-EECCEEccCce-eeEecCCCCEEEEEEEEEEEcch------hhCCCEEEEEEeChhc
Confidence            68999 99999886321 11111 122      23332222      2256799999999853

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.41  E-value=0.00036  Score=37.89  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=25.0

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ++..+.+|+.+.|.|.+.|. .|.++|+
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~   37 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWV   37 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEE
Confidence            67788899999999999999 9999997

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.40  E-value=0.0032  Score=35.59  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=21.1

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .+|.|.+++.+      |+|.|.|...+...
T Consensus        74 asL~I~nl~~s------DsG~Y~C~V~~g~~   98 (112)
T cd05900          74 ATLEITELRSN------DSGTYRCEVMHGIE   98 (112)
T ss_pred             cEEEEeecccc------cCEEEEEEEecCCC
Confidence            37999999766      99999999997653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=97.40  E-value=0.0004  Score=38.97  Aligned_cols=36  Identities=33%  Similarity=0.550  Sum_probs=25.6

Q ss_pred             CceEecCCCeEEEe---CCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFS---NESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~---~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+.....+.   .|+.+.|.|.+.|.|.|.++|+
T Consensus         5 P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~   43 (109)
T cd05773           5 PDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWA   43 (109)
T ss_pred             cccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEE
Confidence            55555542222222   3678999999999999999997

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.36  E-value=0.00028  Score=38.25  Aligned_cols=24  Identities=21%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      ..+.|.+++.+      |+|.|+|.+.+..
T Consensus        53 ~~f~i~~v~~~------~~G~Y~C~~~~~~   76 (91)
T cd05751          53 AKFFIPSMKRE------HAGRYRCYYRSGV   76 (91)
T ss_pred             EEEEccCCChh------HCEEEEEEEECCC
Confidence            36889999665      9999999999863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.32  E-value=0.00052  Score=37.36  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=24.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+..+..|+++.|.|.+.|.|. .+.|+
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~   34 (92)
T cd05866           8 SKVELSVGESKFFTCTAIGEPE-SIDWY   34 (92)
T ss_pred             cceEEcCCCeEEEEEEEEEeCC-eEEEE
Confidence            6677888999999999999998 89997

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>KOG3515|consensus

Probab=97.32  E-value=0.0004  Score=50.48  Aligned_cols=74  Identities=20%  Similarity=0.275  Sum_probs=47.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC--ceE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG--VIL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g--~~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .+.+...+.+      +.|+|+|.|.|...  ...  ...+.+.++ +       ....+........+.+|+.+.|.|.
T Consensus       164 ~l~~~v~Rka------~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~-~-------~~~~~~~~~~~qsF~~g~~inlvc~  229 (741)
T KOG3515|consen  164 LLKQTVSRKA------DNGNYTCPANNRNSPGLSFAKQLTIIVEAP-C-------KGIGITGAQEQQSFTEGQTINLVCN  229 (741)
T ss_pred             ceeeEEEEec------CCceeEcccccccCccccccceeEeecccc-c-------ccceecchhhcCcccccceEEEEeh
Confidence            4556555444      99999999999632  222  233444442 0       1233333333467788999999997


Q ss_pred             ecC-cCCceeEEe
Q psy11568        104 AQG-SPTPKIEWL  115 (116)
Q Consensus       104 ~~g-~P~p~i~W~  115 (116)
                      +.+ +|.+.++|+
T Consensus       230 ~~gg~P~~~~~w~  242 (741)
T KOG3515|consen  230 AQGGNPSQQQTWY  242 (741)
T ss_pred             hhcCCcchhhhhc
Confidence            754 799999996

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.26  E-value=0.005  Score=34.58  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=24.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV   66 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v   66 (116)
                      .|.|.+++.+      |+|.|.|.......... ...|.|
T Consensus        73 sL~I~~l~~s------D~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          73 SLEISRLRSS------DSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             EEEECCCChh------hCEEEEEEEEeCCCcceEEEEEEE
Confidence            6999999766      99999999988653333 244444

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.21  E-value=0.0015  Score=36.00  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=23.8

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      ....+.+|+++.|.|.+.+.|+| .|.|.
T Consensus         9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~   37 (98)
T cd05898           9 QVQYAVRGERGKVKCFIGSTPPPDRIAWA   37 (98)
T ss_pred             ceEEEeCCCcEEEEEEEccCCCCcEEEEE
Confidence            67888899999999999998988 45674

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.17  E-value=0.0018  Score=34.54  Aligned_cols=51  Identities=10%  Similarity=0.177  Sum_probs=28.1

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC-CeEEecC-C--CCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN-GSLMFPP-F--PETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~-~~l~i~~-v--~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +.|+| ++||+++...........+ ++..+.. +  ...   ...|...|+|.+.+..
T Consensus        15 ~~ItW-~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~---~~d~g~~~tC~v~h~~   69 (83)
T cd07705          15 ANIKW-RKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVT---REDDGAEITCSVGHES   69 (83)
T ss_pred             CEeEE-EECCEECCCcceeEEECCCCCEEEEEEEEEEEec---chhCCCEEEEEEECcc
Confidence            58999 9999987642211111222 2322211 1  011   1236789999999985

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.17  E-value=0.00088  Score=35.97  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ....+..|+.+.|.|.+.+ |.+.+.|+.
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k   31 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLF   31 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEE
Confidence            5667788999999999987 889999973

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.15  E-value=0.00098  Score=35.95  Aligned_cols=28  Identities=14%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ....+..|+++.|.|.+.+ |.|.++|++
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~   31 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKF   31 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEE
Confidence            6778889999999999864 788999974

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.14  E-value=0.0013  Score=35.73  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=23.7

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+..|+++.|.|.+.|.| +.++|+
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p-~~i~W~   34 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEP-KDISWF   34 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeC-CeEEEE
Confidence            557788899999999999997 499997

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.10  E-value=0.0016  Score=37.06  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      ++.|.+++.+      |.|.|+|...|..+
T Consensus        81 SI~I~nv~~s------D~G~Y~C~v~n~p~  104 (116)
T cd05879          81 SIVIHNLDYT------DNGTFTCDVKNPPD  104 (116)
T ss_pred             EEEEccCCcc------cCEEEEEEEEcCCC
Confidence            7999999766      99999999999854

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.07  E-value=0.00093  Score=36.50  Aligned_cols=29  Identities=14%  Similarity=0.184  Sum_probs=25.0

Q ss_pred             CeEEEeCCCcEEEEeeecC-----cCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQG-----SPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g-----~P~p~i~W~~  116 (116)
                      ....+.+|+.+.|.|.+.|     .|.|.++|+.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk   40 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYK   40 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEE
Confidence            4566778999999999999     7999999973

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.03  E-value=0.0017  Score=35.32  Aligned_cols=28  Identities=11%  Similarity=0.382  Sum_probs=25.4

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +...+.+|+++.|.|.+.+.|.+.+.|+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~   32 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWS   32 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEe
Confidence            5678889999999999999999999996

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.02  E-value=0.0044  Score=35.31  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=25.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK   67 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~   67 (116)
                      +|.|.+++..      |+|.|.|.......... ...|.|.
T Consensus        80 sL~i~~v~~s------D~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          80 SLTIVKLRAS------DAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEEEcccccc------cCEEEEEEEEECCcccEEEEEEEEE
Confidence            7999999766      99999999988764444 2444443

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.98  E-value=0.00074  Score=36.57  Aligned_cols=49  Identities=16%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             cEEEEEccCCeeeecccc--ceEEeeCCe------EEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKD--LRIALSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~--~~~~~~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +.|+| ++||.++.....  ......+++      |.+....      ..|.|.|.|.+.+...
T Consensus        30 ~~i~W-~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~------~~~~~~y~C~v~h~~~   86 (95)
T cd00098          30 ITVTW-LKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSD------WNSGDTYTCVVTHESL   86 (95)
T ss_pred             cEEEE-EECCEECCCceeccccccCCCCCEEEEEEEEECHHH------hCCCCCEEEEEEeCCC
Confidence            47899 899998864221  111222332      3332221      1389999999999753

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00096 Ig Immunoglobulin domain

Probab=96.96  E-value=0.0023  Score=31.41  Aligned_cols=48  Identities=19%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             cEEEEEccCCeeeecccc------ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKD------LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~------~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +.+.| ++++........      .........|.|.++...      |.|.|.|.+.+..
T Consensus        13 ~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~y~C~~~~~~   66 (74)
T cd00096          13 PTITW-LKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE------DSGTYTCVASNSA   66 (74)
T ss_pred             CcEEE-EECCEECCCcccEEeccccCcceeEEEEEECccCcc------cCcEEEEEEecCc
Confidence            56889 666655432110      011122336888888655      9999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.96  E-value=0.0089  Score=33.67  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +|.|.+++.+      |+|.|.|......
T Consensus        73 sL~i~nv~~~------D~G~Y~C~v~~g~   95 (110)
T cd05902          73 SLVLSRLRYS------DSGTYRCEVVLGI   95 (110)
T ss_pred             EEEECCCCHH------HCEEEEEEEEECC
Confidence            7999999766      9999999998865

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=96.95  E-value=0.0021  Score=33.74  Aligned_cols=27  Identities=15%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+..|+.+.|.|.+.+. .|.+.|+
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~   28 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWT   28 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEe
Confidence            45677889999999999996 5789997

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>PHA02633 hypothetical protein; Provisional

Probab=96.94  E-value=0.004  Score=31.20  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEe
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA   68 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~   68 (116)
                      +..|.|-+...+      |+|.|.|..+|.--... +..+.|..
T Consensus        17 ~~nLwilpa~~s------DSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         17 CNNMLILNPTQS------DSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cccEEEeccccc------cCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            347888888655      99999999998743322 45555543

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.89  E-value=0.0024  Score=40.98  Aligned_cols=48  Identities=25%  Similarity=0.366  Sum_probs=35.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |...|...+|+.+... ..-...+.|.|.+.+....      ++|.|+|......
T Consensus        13 P~y~W~GP~g~~l~gn-~~~nIT~TG~L~~~~F~es------mSG~YTCtLsYk~   60 (271)
T PF07354_consen   13 PTYLWTGPNGKPLSGN-SYVNITETGKLMFKNFQES------MSGSYTCTLSYKP   60 (271)
T ss_pred             CceEEECCCCcccCCC-CeEEEccCceEEeeccccc------cCCceEEEEEEEe
Confidence            7889977778877631 2223456678999999665      9999999977653

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=96.86  E-value=0.0025  Score=33.45  Aligned_cols=26  Identities=42%  Similarity=0.838  Sum_probs=22.8

Q ss_pred             EEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         90 FEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+..|+.+.|.|.+.+.|.|.+.|+
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~   29 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWL   29 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEE
Confidence            34557999999999999999999996

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=96.74  E-value=0.0032  Score=32.52  Aligned_cols=34  Identities=24%  Similarity=0.693  Sum_probs=26.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+   ..+..|+.+.|.|.+.+.|.+.+.|++
T Consensus         2 P~l~~~~---~~v~~g~~~~l~C~~~~~p~~~~~w~~   35 (80)
T PF13895_consen    2 PVLSSSP---QSVEEGDSVTLTCSVSGNPPPQVQWYK   35 (80)
T ss_dssp             -EEEEES---SEEETTSEEEEEEEEESSSSSEEEEEE
T ss_pred             cEEEccc---eEEeCCCcEEEEEEEEcccceeeeeee
Confidence            4444443   346889999999999999999999973

...

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.66  E-value=0.0085  Score=31.93  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             cEEEEEccCCeeeeccccceEEee-CC------eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS-NG------SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~-~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      ..|+| ++||+++........... ++      .|.+..-.      ..+...|+|.+.+..
T Consensus        15 ~~itW-~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~------~d~g~~ytC~v~h~~   69 (83)
T cd05884          15 ADIRW-FKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDR------SDDGVAIICRVDHES   69 (83)
T ss_pred             CEEEE-EECCEECcCceeeEeeCCCCCEEEEEEEEEEEccc------ccCCCEEEEEEechh
Confidence            57899 999998754211111111 12      24443221      225679999999874

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=96.66  E-value=0.007  Score=33.05  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=21.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILS   61 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~   61 (116)
                      +|.|.+++.+      |+|.|.|..... .|....
T Consensus        62 sL~I~nv~~~------D~G~Y~C~~~~~p~g~~~~   90 (97)
T cd05846          62 SITIWNVTLE------DEGCYKCIFNTFPDGSKSG   90 (97)
T ss_pred             EEEEeCCcee------eeEEEEEEEEeCCCCCeee
Confidence            6999999766      999999997765 455443

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.62  E-value=0.0028  Score=35.88  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.++..+      |+|.|.|.+.|...
T Consensus        80 sL~I~~v~~~------D~G~Y~C~v~~~~~  103 (115)
T cd05880          80 SILIWQLQPT------DNGTYTCQVKNPPD  103 (115)
T ss_pred             EEEEeeCChh------hCEEEEEEEEeCCC
Confidence            6999999766      99999999998754

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.58  E-value=0.012  Score=30.11  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      +|+| ++ |..+...       .+.++-+..+..+      -.|.|.|.+.+
T Consensus        18 si~W-~k-G~~~~~~-------~~~tlnLGs~~~D------PRG~Y~C~~s~   54 (69)
T cd07691          18 NITW-KK-GKEILEV-------SNTLLDLGSRIND------PRGTYSCKESE   54 (69)
T ss_pred             cEEE-ec-Ccccccc-------cccEEeccCcccC------CCcceEecCcc
Confidence            4889 77 5444311       1446667777555      68999999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.57  E-value=0.023  Score=34.93  Aligned_cols=39  Identities=8%  Similarity=0.152  Sum_probs=27.4

Q ss_pred             eCCeEEecCCCCCCCCCCCCceEEEEEEEcC-CC-ceEE-EEEEEEeC
Q psy11568         25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNE-AG-VILS-RFVHVKAG   69 (116)
Q Consensus        25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g-~~~~-~~~~v~~~   69 (116)
                      .+..|.|.+++++      |+|.|.|....- .| .... ..|.|...
T Consensus        83 ~~StItIknVt~s------DeGcY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         83 NESTILIKNVSLK------DNGCYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             CcceEEEEeCChh------hCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence            3457999999766      999999987665 45 4443 45666653

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=96.56  E-value=0.0029  Score=30.72  Aligned_cols=23  Identities=39%  Similarity=0.872  Sum_probs=20.2

Q ss_pred             CCCcEEEEeeecCcCCceeEEeC
Q psy11568         94 NESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        94 ~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +|+++.|.|.+.+.|.+.+.|+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~   23 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLK   23 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEE
Confidence            47899999999999999999973

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.48  E-value=0.0028  Score=34.86  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=21.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.+++.+      |+|.|.|.+.+..+
T Consensus        68 sL~I~~v~~~------D~G~Y~C~v~~~~~   91 (105)
T cd00099          68 TLTISSLQPE------DSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEECCCCHH------HCEEEEEEEecCCC
Confidence            7999999766      99999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.42  E-value=0.0046  Score=34.95  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.++..+      |+|.|.|...|...
T Consensus        81 sL~I~~v~~~------D~G~Y~C~v~~~~~  104 (116)
T cd05715          81 SIVIHNLQFT------DNGTYTCDVKNPPD  104 (116)
T ss_pred             EEEEeeCCcc------cCEEEEEEEEeCCC
Confidence            6999999766      99999999998754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.37  E-value=0.0045  Score=34.36  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |+|.|.|.+.+..
T Consensus        71 ~L~I~~~~~~------DsG~Y~C~~~~~~   93 (109)
T cd04983          71 SLHISAAQLS------DSAVYFCALSESG   93 (109)
T ss_pred             EEEECCCCHH------HCEEEEEEEecCC
Confidence            6999999766      9999999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.20  E-value=0.01  Score=32.11  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=22.1

Q ss_pred             eEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .....+|+.+.|.|.. +.|.|.++|+
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wy   30 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWL   30 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEE
Confidence            4456789999999996 5899999997

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.18  E-value=0.057  Score=30.15  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEE
Q psy11568         23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV   66 (116)
Q Consensus        23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v   66 (116)
                      ...+-+|.|..+..+      |+|.|.-..++..|.+....+.|
T Consensus        67 ~~enlaLlIkaAq~q------DSG~Y~LEvT~~sG~V~~~~FqV  104 (108)
T PF11465_consen   67 TSENLALLIKAAQPQ------DSGLYCLEVTNESGKVCTKNFQV  104 (108)
T ss_dssp             ETTTTEEEESS-SGG------G-EEEEEEEEETTSCEEEEEEEE
T ss_pred             eccCceEEEeecCcc------cCceEEEEEEcCCCcEEEEEEEE
Confidence            445568999999655      99999999999999887644333

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.15  E-value=0.011  Score=32.44  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=23.7

Q ss_pred             CeEEEeCCCcEEEEee-ecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCA-AQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~-~~g~P~p~i~W~  115 (116)
                      ....+.+|+.+.|.|. -.|.|.|.++|+
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~   39 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWL   39 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEE
Confidence            4567888999999995 477899999997

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.12  E-value=0.076  Score=28.68  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=19.5

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      ..+|.+..+...      |+|.++|.....
T Consensus        50 ~ktL~~~qv~~q------dSG~WtC~V~~~   73 (88)
T cd07694          50 KKTLNLVQLGPN------DSGTWDCIVSVN   73 (88)
T ss_pred             ccEEEeceeCcc------cCCEEEEEEEEC
Confidence            347889999665      999999998755

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00409 IG Immunoglobulin

Probab=96.07  E-value=0.017  Score=29.59  Aligned_cols=29  Identities=24%  Similarity=0.584  Sum_probs=24.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ....+..|+++.|.|.+.+.+.+.+.|+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~   30 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYK   30 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEE
Confidence            34566789999999999999899999963

>smart00410 IG_like Immunoglobulin like

Probab=96.07  E-value=0.017  Score=29.59  Aligned_cols=29  Identities=24%  Similarity=0.584  Sum_probs=24.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ....+..|+++.|.|.+.+.+.+.+.|+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~   30 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYK   30 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEE
Confidence            34566789999999999999899999963

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.03  E-value=0.022  Score=31.34  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      +|.|.+++.+      |+|.|.|.....
T Consensus        80 sL~i~~l~~~------DsG~Y~C~v~~~  101 (114)
T PF07686_consen   80 SLTIKNLQPS------DSGTYFCQVSTS  101 (114)
T ss_dssp             EEEESSESGG------GEEEEEEEEEES
T ss_pred             EEEECCCCcC------cCEEEEEEEEEC
Confidence            5999999766      999999998887

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=95.96  E-value=0.011  Score=29.95  Aligned_cols=34  Identities=35%  Similarity=0.696  Sum_probs=23.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSP-TPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~p~i~W~  115 (116)
                      |.+...+ .......+. +.|.|.+.+.| .+.++|+
T Consensus         2 P~I~~~~-~~~~~~~~~-~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen    2 PQISVPP-PPVVTSGGS-VTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             SEEEEES-TSEEETTEE-EEEEEEESSEESSEEEEEE
T ss_pred             CEEEEcC-CCcEeecee-EEEEEEEccccCCeEEEEE
Confidence            5555554 333333333 99999999988 8899996

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=95.79  E-value=0.014  Score=28.97  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=19.2

Q ss_pred             CCcEEEEeee-cCcCCceeEEeC
Q psy11568         95 ESGGRLDCAA-QGSPTPKIEWLI  116 (116)
Q Consensus        95 g~~~~l~C~~-~g~P~p~i~W~~  116 (116)
                      |+++.|.|.+ .+.|.+.++|++
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~   23 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSK   23 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEE
Confidence            7889999999 777888999973

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=95.78  E-value=0.037  Score=30.63  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             CeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSP-TPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P-~p~i~W~  115 (116)
                      ....+.+|+++.|.|.+.+.. ...+.|+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wy   36 (106)
T cd04980           8 ATLSVSPGESATISCKASQSVSSNYLAWY   36 (106)
T ss_pred             CcEEECCCCCEEEEEEECCCCCCCcEEEE
Confidence            667888899999999997765 6789997

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.76  E-value=0.0093  Score=31.86  Aligned_cols=22  Identities=32%  Similarity=0.821  Sum_probs=17.3

Q ss_pred             CCcEEEEeee-cCcCCceeEEeC
Q psy11568         95 ESGGRLDCAA-QGSPTPKIEWLI  116 (116)
Q Consensus        95 g~~~~l~C~~-~g~P~p~i~W~~  116 (116)
                      |+.+.+.|.+ .|.|.|.|+|++
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~   36 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYL   36 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEE
Confidence            6799999955 557999999973

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>KOG3515|consensus

Probab=95.74  E-value=0.024  Score=41.75  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL   81 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~   81 (116)
                      +.+.| ++++....   ..+....+.++......++      ..+.|.|.+.|..+......+.....       .+ |.
T Consensus        38 ~~~eW-~h~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~c~a~ns~~~~~~~~~~l~v~-------~~-pa   99 (741)
T KOG3515|consen   38 IDVEW-YHSTSGEH---GRYATIADPTLVTTGDVRD------TVAELNCRAFNSVGMPSRCPMILDVD-------YP-PA   99 (741)
T ss_pred             cceEE-EecCcccc---cccccccCCceeeecchhh------hhhhhhhhhcccccCceecceeeccc-------cC-cc
Confidence            46779 66655443   2233455667777776444      78999999999966555432222211       00 32


Q ss_pred             eEecCCCeEEEeCCCcEEEEeee--cCcCCceeEEeC
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAA--QGSPTPKIEWLI  116 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~--~g~P~p~i~W~~  116 (116)
                      ..... .......+..+.+.|.+  .+.|.+.+.|.+
T Consensus       100 ~~~~~-~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~  135 (741)
T KOG3515|consen  100 CLPEL-GEIFQVDKGVVQIICSAKVAGRPNPNLRWGF  135 (741)
T ss_pred             ccccc-cchhhhcCCeEEEEEeecCCCCCCcceeeee
Confidence            22222 33344557888888844  456888999964

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=95.63  E-value=0.013  Score=32.63  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.+..
T Consensus        73 ~L~I~~~~~~------Dsg~Y~Ca~~~~~   95 (110)
T cd05899          73 SLTIKSAEPE------DSAVYLCASSLGG   95 (110)
T ss_pred             EEEECCCChh------hCEEEEEEeeCCC
Confidence            6999999766      9999999988753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=95.58  E-value=0.011  Score=32.72  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+.+.
T Consensus        72 ~L~I~~~~~~------Dsg~Y~Ca~~~~   93 (106)
T cd04980          72 TLTISRVEPE------DAAVYYCQQYGT   93 (106)
T ss_pred             EEEECCCChH------HCEEEEEEEeCC
Confidence            5899999665      999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=95.56  E-value=0.026  Score=30.72  Aligned_cols=23  Identities=9%  Similarity=0.381  Sum_probs=19.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |+|.|.|......
T Consensus        65 ~L~I~~v~~~------DsG~Y~C~~~~~~   87 (98)
T cd05716          65 TVTLNQLRKE------DAGWYWCGVGDDG   87 (98)
T ss_pred             EEEEcCCCHH------HCEEEEEEcccCC
Confidence            6999999766      9999999887754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=95.53  E-value=0.073  Score=27.57  Aligned_cols=47  Identities=17%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             EEEEEccCCeeeeccccc-eEE-eeCCe------EEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL-RIA-LSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~~~-~~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++...... ... ..+++      |.+....      ..+...|+|.+.+..
T Consensus        17 ~v~W-~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~------~~~~~~~tC~V~H~~   71 (75)
T smart00407       17 TVTW-LRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAST------WESGDTYTCQVTHEG   71 (75)
T ss_pred             EEEE-EECCEECCCCEEECceEECCCCCEEEEEEEEEcccc------CCCCCEEEEEEEEcC
Confidence            6899 8899875421111 111 12332      3333222      226689999987753

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=95.51  E-value=0.018  Score=31.43  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=18.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+.+.
T Consensus        64 ~L~I~~~~~~------Dsg~Y~C~~~~~   85 (98)
T cd04984          64 SLTISGAQTE------DEADYYCQVWDS   85 (98)
T ss_pred             EEEECCCChh------hCEEEEEEEccC
Confidence            5899999665      999999998754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00406 IGv Immunoglobulin V-Type

Probab=95.33  E-value=0.011  Score=30.62  Aligned_cols=18  Identities=22%  Similarity=0.425  Sum_probs=15.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCR   51 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~   51 (116)
                      .|.|.+++.+      |+|.|.|.
T Consensus        63 ~L~i~~~~~~------D~G~Y~C~   80 (81)
T smart00406       63 SLTISNLRVE------DTGTYYCA   80 (81)
T ss_pred             EEEEcCCCHH------HCEEEEEc
Confidence            5999999766      99999996

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=95.27  E-value=0.049  Score=28.86  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=21.1

Q ss_pred             EEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568         90 FEFSNESGGRLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~~g-~P~p~i~W~  115 (116)
                      ..+.+|+++.|.|.+.+ .|.+.+.|+
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~   35 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYY   35 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEE
Confidence            36778999999999854 567788996

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.07  E-value=0.049  Score=29.63  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=17.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .+.|..++.+      |+|.|+|.....
T Consensus        56 ~f~I~~~~~~------~~G~Y~C~~~~~   77 (94)
T cd05711          56 SFPLGPVTPA------HAGTYRCYGSYN   77 (94)
T ss_pred             EEEecCCCcc------cCEEEEEEEECC
Confidence            5688888655      999999997643

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>KOG1480|consensus

Probab=94.98  E-value=0.012  Score=43.19  Aligned_cols=51  Identities=24%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .+.| ++++..+.. ..+.+......+.+..++.      .|.|+|+|++.|..+...+
T Consensus       161 e~~w-~k~e~~~~p-d~n~~~~~d~~li~~~arl------sd~~nytc~a~ni~~~r~~  211 (909)
T KOG1480|consen  161 EVEW-LKNEVVIDP-DANVIRASDHNLIISQARL------SDSGNYTCEATNIVAKRKS  211 (909)
T ss_pred             hhhc-cccCCCCCc-cccchhhhcCCccccchhh------hhcccceeeeehhhccccc
Confidence            3579 888877764 2223445566788888854      4999999999999877664

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.88  E-value=0.065  Score=29.68  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=21.2

Q ss_pred             EEEeCCCcEEEEeeecC-cCCce--eEEe
Q psy11568         90 FEFSNESGGRLDCAAQG-SPTPK--IEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~~g-~P~p~--i~W~  115 (116)
                      ..+.+|+.+.|.|.+.| .|.+.  |+|+
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~   39 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLL   39 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEe
Confidence            34578999999999977 57776  6897

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=94.86  E-value=0.081  Score=28.88  Aligned_cols=48  Identities=10%  Similarity=0.155  Sum_probs=25.5

Q ss_pred             EEEEEccCCeeeeccccceEE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|+| ++||+++.. ......  ..+++..+.....-   ...+...|.|.+...
T Consensus        33 ~v~W-~~dg~~~~~-~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~   82 (93)
T cd05770          33 EIRL-LKNGVKIPK-VEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHN   82 (93)
T ss_pred             EEEE-EECCEECCC-cEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEEC
Confidence            5799 999998762 111111  22334333111000   123677899998875

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=94.74  E-value=0.027  Score=31.64  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=18.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        78 ~L~I~~~~~~------Dsg~Y~C~~~~~   99 (116)
T cd04982          78 TLTIQNLEKE------DSATYYCAYWES   99 (116)
T ss_pred             EEEEEECCHH------HCEEEEEEEecC
Confidence            6999999766      999999998653

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=94.67  E-value=0.092  Score=28.77  Aligned_cols=28  Identities=11%  Similarity=0.184  Sum_probs=23.6

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ++..+.+|+++.|.|.+.+.....+.|+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~   32 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLL   32 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEE
Confidence            5678889999999999999876667774

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.64  E-value=0.11  Score=28.81  Aligned_cols=48  Identities=8%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             EEEEccCCeeeeccccce----EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          4 LLWLIRDNTVIAYVKDLR----IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~----~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      |+| +++++.+.......    ......++.+. +.++     .|.-.|+|.|.+..+.
T Consensus        36 i~W-~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~-----D~g~~~sC~A~l~l~~   87 (100)
T cd05755          36 VVL-LRGNETLSRQPFGDNTKSPVNAPATITIT-VDRE-----DHGANFSCETELDLRP   87 (100)
T ss_pred             EEE-eeCCEEcccceeccccCCCceeEEEEEEe-cchh-----hCCcEEEEEEEeccCc
Confidence            799 88888885311100    01111234443 3333     2555999999998643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=94.63  E-value=0.054  Score=29.06  Aligned_cols=28  Identities=14%  Similarity=0.243  Sum_probs=23.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +...+..|+.+.|.|...+. .+.+.|++
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~   31 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLF   31 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEE
Confidence            56778899999999998775 67999975

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.41  E-value=0.033  Score=30.85  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|+|.|...+
T Consensus        70 ~L~I~~~~~s------DsgtY~Ca~~~   90 (104)
T cd05720          70 VLTLKNFQKE------NEGYYFCSVAS   90 (104)
T ss_pred             EEEECCCCHH------HCEEEEEEEcc
Confidence            5999999766      99999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=94.35  E-value=0.071  Score=29.60  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|...+.
T Consensus        73 ~L~I~~~~~~------Dsg~YyCa~~~~   94 (107)
T cd07700          73 RLHINRVKPE------DSGTYFCMTVGS   94 (107)
T ss_pred             EEEECCCCHH------HCEEEEEeEcCC
Confidence            4999999666      999999997643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=94.28  E-value=0.13  Score=28.00  Aligned_cols=50  Identities=12%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             EEEEEccCCeeeecc-ccce-EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYV-KDLR-IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~-~~~~-~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++... .... ....+++..+.....-   ...+...|.|.+....
T Consensus        32 ~v~W-~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          32 TVKW-FKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             EEEE-EECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence            5799 9999987642 1111 1112233222111100   1225668999988764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=94.25  E-value=0.041  Score=30.95  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=18.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.....
T Consensus        73 sL~I~~~~~~------Dsg~Y~C~~~~~   94 (116)
T cd07706          73 SLTISALQLE------DSAKYFCALSTL   94 (116)
T ss_pred             EEEECCCCHH------HCEEEEEEEECC
Confidence            6999999766      999999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=94.13  E-value=0.097  Score=26.61  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.| .+|+..+..        .+..+.+.+-. +      ++|.|.|.+.+..
T Consensus        21 i~W-~~n~~~~~g--------~~~~~~~~~~~-e------~~G~Y~C~~~~~~   57 (65)
T cd07692          21 IKW-KKNDQVSQG--------SDEKYLSLNHF-S------SSGYYHCTADNAN   57 (65)
T ss_pred             ceE-EeCCccCCC--------CCceEEeeccC-C------CCceEEEEeCCCc
Confidence            778 777644431        12233344443 3      8999999997653

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=94.13  E-value=0.11  Score=28.44  Aligned_cols=49  Identities=10%  Similarity=0.150  Sum_probs=24.9

Q ss_pred             EEEEEccCCeeeecccc-ceEE-eeCCeEEe-cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD-LRIA-LSNGSLMF-PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~~~-~~~~~l~i-~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++..... .... ..+++..+ ..+..    .+.+...|+|.+....
T Consensus        33 ~v~W-~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v----~~~~~~~ytC~V~H~~   84 (94)
T cd05767          33 NVTW-LKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF----TPEEGDIYSCIVEHWG   84 (94)
T ss_pred             EEEE-EECCeEccCceEEeeeEeCCCCcEEEEEEEEE----ECCCCCeEEEEEEeCC
Confidence            5799 899998753211 1111 12233222 11111    1225679999988753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=94.08  E-value=0.071  Score=30.23  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=18.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.....
T Consensus        81 sL~I~~l~~~------Dsg~Y~C~~~~~  102 (119)
T cd05712          81 SLLISDAQPE------DSGKYFFRVELG  102 (119)
T ss_pred             EEEEccCChh------hCeEEEEEEEcC
Confidence            5999999665      999999987664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.83  E-value=0.34  Score=25.66  Aligned_cols=13  Identities=46%  Similarity=0.774  Sum_probs=11.0

Q ss_pred             CceEEEEEEEcCC
Q psy11568         44 HSTVYRCRASNEA   56 (116)
Q Consensus        44 d~G~y~C~a~n~~   56 (116)
                      +...++|.+.+..
T Consensus        72 ~~~~~~C~~~~~~   84 (89)
T PF08205_consen   72 HGKTLTCRASHPA   84 (89)
T ss_dssp             TTEEEEEEEEETT
T ss_pred             CCeEEEEEEECCc
Confidence            6779999999875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=93.38  E-value=0.27  Score=27.12  Aligned_cols=27  Identities=26%  Similarity=0.690  Sum_probs=19.8

Q ss_pred             eEEEeCCCcEEE-Eeee-cCcCCceeEEe
Q psy11568         89 RFEFSNESGGRL-DCAA-QGSPTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l-~C~~-~g~P~p~i~W~  115 (116)
                      ...+.+|+.+.+ .|.+ .|.|.+.|+|+
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~   38 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWE   38 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEe
Confidence            344556777777 6755 66899999997

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=93.29  E-value=0.27  Score=26.55  Aligned_cols=13  Identities=23%  Similarity=0.644  Sum_probs=10.9

Q ss_pred             CceEEEEEEEcCC
Q psy11568         44 HSTVYRCRASNEA   56 (116)
Q Consensus        44 d~G~y~C~a~n~~   56 (116)
                      +.+.|+|.+.+..
T Consensus        71 ~~~~ytC~V~H~~   83 (93)
T cd07698          71 DKARYSCRVEHSG   83 (93)
T ss_pred             CCCEEEEEEEeCC
Confidence            7889999998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=93.28  E-value=0.26  Score=27.76  Aligned_cols=13  Identities=8%  Similarity=0.572  Sum_probs=10.9

Q ss_pred             EEEEEccCCeeeec
Q psy11568          3 VLLWLIRDNTVIAY   16 (116)
Q Consensus         3 ~v~W~~~~g~~~~~   16 (116)
                      .|+| ++||+++..
T Consensus        39 ~v~W-~kng~~~~~   51 (111)
T cd05772          39 TVKW-LKNGNELSA   51 (111)
T ss_pred             EEEE-EECCEECcc
Confidence            6899 999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=92.88  E-value=0.35  Score=26.88  Aligned_cols=28  Identities=14%  Similarity=0.268  Sum_probs=25.3

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCce-eEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPK-IEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~-i~W~  115 (116)
                      ....+..|+.+.|.|.+..-|+|. +.|.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~   39 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWI   39 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEE
Confidence            567788999999999999999997 9996

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=92.80  E-value=0.28  Score=26.49  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=20.5

Q ss_pred             EEEeCCCcEEEEeeecCcC--CceeEEe
Q psy11568         90 FEFSNESGGRLDCAAQGSP--TPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~~g~P--~p~i~W~  115 (116)
                      ..+..|+++.|.|.....+  .+.+.|+
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~   36 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWR   36 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEe
Confidence            3567799999999996644  4599996

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00098 IgC Immunoglobulin Constant domain

Probab=92.20  E-value=0.23  Score=26.59  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=19.2

Q ss_pred             eCCCcEEEEeeecCc-C-CceeEEe
Q psy11568         93 SNESGGRLDCAAQGS-P-TPKIEWL  115 (116)
Q Consensus        93 ~~g~~~~l~C~~~g~-P-~p~i~W~  115 (116)
                      ..|+.+.|.|.+.|. | .+.++|+
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~   35 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWL   35 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEE
Confidence            358999999999997 6 3689997

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.13  E-value=0.24  Score=26.07  Aligned_cols=44  Identities=18%  Similarity=0.416  Sum_probs=25.4

Q ss_pred             EEEEEccCCeeeeccccce-EE-eeCCe------EEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLR-IA-LSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~-~~-~~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+.+....... .. ..+++      |.+.   ..      +...|.|.+....
T Consensus        26 ~v~W-~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~------~~~~ysC~V~H~~   77 (83)
T PF07654_consen   26 TVTW-LKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WN------SGDEYSCRVTHES   77 (83)
T ss_dssp             EEEE-EETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TT------TTGGEEEEEEETT
T ss_pred             EEEE-EeccceeeeeeeecccccccccceeeeEEEEec---CC------CCCEEEEEEEECC
Confidence            6899 99999876422111 11 13342      3333   22      5568999988764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=92.03  E-value=0.19  Score=27.68  Aligned_cols=50  Identities=14%  Similarity=0.282  Sum_probs=25.4

Q ss_pred             EEEEEccCCeeeecccc-ce-EEeeCCeEEecC---CCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD-LR-IALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~-~~~~~~~l~i~~---v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++..... .. ....+++..+..   +..+   ...+...|+|.+....
T Consensus        35 ~v~W-~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~---~w~~~~~~sC~V~H~~   89 (100)
T cd07699          35 TVQW-KVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKS---DWNKHKVYTCEVTHEG   89 (100)
T ss_pred             EEEE-EECCEECcccEeccccEECCCCCEEEEEEEEEcHH---HhCCCCeEEEEEEecC
Confidence            6899 999998753111 11 111234332211   1111   0113579999988764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=91.93  E-value=0.15  Score=28.87  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|....
T Consensus        77 ~L~I~~~~~~------Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPE------DTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHH------HCEEEEEEEEc
Confidence            5899999766      99999998765

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=91.59  E-value=0.23  Score=26.90  Aligned_cols=27  Identities=19%  Similarity=0.605  Sum_probs=21.3

Q ss_pred             eEEEeCCCcEEEEeeecC-----cCCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQG-----SPTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g-----~P~p~i~W~  115 (116)
                      ...+..|+++.|.|...+     +|.|.+.|+
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wy   35 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWY   35 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEe
Confidence            355677999999998754     268899997

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=91.31  E-value=0.3  Score=26.79  Aligned_cols=13  Identities=15%  Similarity=0.299  Sum_probs=10.3

Q ss_pred             EEEEEccCCeeeec
Q psy11568          3 VLLWLIRDNTVIAY   16 (116)
Q Consensus         3 ~v~W~~~~g~~~~~   16 (116)
                      .|+| ++||+.+..
T Consensus        34 ~v~W-~kng~~~~~   46 (96)
T cd07697          34 QVHW-REGNSPSIL   46 (96)
T ss_pred             EEEE-EECCEECcC
Confidence            5799 999998753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=90.81  E-value=0.37  Score=26.35  Aligned_cols=21  Identities=29%  Similarity=0.639  Sum_probs=16.9

Q ss_pred             CCcEEEEeee-cCcCCceeEEe
Q psy11568         95 ESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        95 g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      .....+.|.+ .|+|.+.|+|+
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~   36 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWE   36 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEE
Confidence            3456778988 67899999997

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=90.73  E-value=0.84  Score=24.86  Aligned_cols=13  Identities=15%  Similarity=0.695  Sum_probs=10.2

Q ss_pred             CceEEEEEEEcCC
Q psy11568         44 HSTVYRCRASNEA   56 (116)
Q Consensus        44 d~G~y~C~a~n~~   56 (116)
                      +...|.|.+....
T Consensus        74 ~~~~ytC~V~H~~   86 (94)
T cd05847          74 SGKTYTCKVTHQG   86 (94)
T ss_pred             CCCeEEEEEEECC
Confidence            4579999998864

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=90.17  E-value=0.73  Score=24.69  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=22.7

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...|  ...+..|+++.|.|... .+...+.|+
T Consensus         3 P~L~a~p--~~vV~~G~~VtL~C~~~-~~~~~f~l~   35 (91)
T cd05751           3 PSLWAEP--SSVVPLGKPVTLRCQGP-YGAVEYRLY   35 (91)
T ss_pred             CEEEecC--CCccCCCCcEEEEEecC-CCCCEEEEE
Confidence            5555554  24667899999999875 555566664

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=89.93  E-value=0.44  Score=26.09  Aligned_cols=20  Identities=25%  Similarity=0.645  Sum_probs=16.2

Q ss_pred             CcEEEEeeec-CcCCceeEEe
Q psy11568         96 SGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        96 ~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      ....+.|.+. |+|.+.|+|+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~   36 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWS   36 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEE
Confidence            4567889765 7899999997

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=89.89  E-value=0.51  Score=27.48  Aligned_cols=22  Identities=9%  Similarity=0.055  Sum_probs=14.5

Q ss_pred             ceEEEEEEEcCCCceEE-EEEEE
Q psy11568         45 STVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus        45 ~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+|.+......... ..|..
T Consensus        97 ~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   97 EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             -EEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccceEEEEEecCCCceEEEEEEE
Confidence            69999999988754443 33433

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=89.19  E-value=4.1  Score=25.92  Aligned_cols=29  Identities=10%  Similarity=0.214  Sum_probs=23.7

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .++|+|.++..+      ..|-|+|.+....+...
T Consensus        99 ~STLTIkk~~i~------N~GCYtc~~ks~~~k~E  127 (251)
T PHA02982         99 SSTFTMKKPDPQ------NLGCFTCEAKDAEGKEE  127 (251)
T ss_pred             ceeEEeccCCcc------cCCceEEEEecCCCchh
Confidence            458999999765      89999999999776554

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=87.03  E-value=1.6  Score=23.55  Aligned_cols=33  Identities=12%  Similarity=0.204  Sum_probs=20.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+  ...+..|++++|.|.... +.-.+.|+
T Consensus         2 P~l~a~p--~~vV~~G~~VTL~C~~~~-~~~~f~l~   34 (94)
T cd05711           2 PFLSAHP--SPVVPSGENVTLQCHSDI-RFDRFILY   34 (94)
T ss_pred             CEEEecC--CCccCCCCeEEEEEecCC-CCCEEEEE
Confidence            4444433  456678999999997654 33345554

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=86.48  E-value=1.7  Score=26.95  Aligned_cols=29  Identities=14%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CeEEEeCCCcEEEEeeec-CcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQ-GSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~-g~P~p~i~W~~  116 (116)
                      ....+.+|+++.|.|... +...+.++|+.
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK   52 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKK   52 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEE
Confidence            456778899999999984 66688999973

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=86.08  E-value=0.69  Score=25.57  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=16.7

Q ss_pred             CCCcEEEEeeecCc-CCc-eeEEe
Q psy11568         94 NESGGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        94 ~g~~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      .++.+.|.|.+.|- |.. .++|+
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~   38 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWL   38 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEE
Confidence            36889999999995 433 55896

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=85.17  E-value=0.73  Score=25.15  Aligned_cols=10  Identities=10%  Similarity=0.415  Sum_probs=8.6

Q ss_pred             EEEEEccCCee
Q psy11568          3 VLLWLIRDNTV   13 (116)
Q Consensus         3 ~v~W~~~~g~~   13 (116)
                      .|+| ++||++
T Consensus        34 ~vtW-~k~g~~   43 (95)
T cd04985          34 TFTW-NSGSNS   43 (95)
T ss_pred             EEEE-eECCEE
Confidence            5789 999997

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=83.46  E-value=1.8  Score=23.31  Aligned_cols=21  Identities=33%  Similarity=0.784  Sum_probs=17.3

Q ss_pred             CCcEEEEeeecCc-CCc-eeEEe
Q psy11568         95 ESGGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        95 g~~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      ++.+.|.|.+.|- |.+ .++|+
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~   36 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWL   36 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEE
Confidence            6789999999995 554 78896

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03042 CD47-like protein; Provisional

Probab=83.04  E-value=3.1  Score=27.42  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=24.4

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.| +.|++.+....+.    ...+|.+..-       ..-.|+|+|.+.+...
T Consensus        52 ~V~W-kf~~~~If~~n~t----n~aSL~~~f~-------~~l~GNYTCEv~~l~n   94 (286)
T PHA03042         52 HINW-KFNNKVIFKKNNT----NTSSLKFNFS-------KNLSGNYTCEAINKFN   94 (286)
T ss_pred             EEEE-EeCCeeEEEecCC----cceEEEEecc-------ccCCCceeEEEeeccc
Confidence            4788 7777766431110    1123444322       2257999999988654

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=82.83  E-value=1.7  Score=23.96  Aligned_cols=20  Identities=25%  Similarity=0.509  Sum_probs=15.9

Q ss_pred             CcEEEEee-ecCcCCceeEEe
Q psy11568         96 SGGRLDCA-AQGSPTPKIEWL  115 (116)
Q Consensus        96 ~~~~l~C~-~~g~P~p~i~W~  115 (116)
                      ..+.-.|. +.|+|++.|+|.
T Consensus        21 ~v~VA~CiSa~GrPpa~ItW~   41 (98)
T cd05890          21 KMLVATCVSANGKPPSVVRWD   41 (98)
T ss_pred             eEEEEEEEcCCCcCCcEeEEE
Confidence            44566797 788999999995

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=81.62  E-value=6  Score=20.92  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=16.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEE-EcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRA-SNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a-~n~~   56 (116)
                      .........+      |+|.+.|.| .+..
T Consensus        44 ~~~~~~~~~~------d~G~w~C~a~~~~~   67 (80)
T PF05790_consen   44 LVSTFTPTTE------DSGTWVCTASDNEP   67 (80)
T ss_dssp             EEEEESBTCG------GSEEEEEEEEECTT
T ss_pred             EEEEecCCCC------CCEEEEEEEcCCce
Confidence            4555666444      999999999 4444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03189 UL14 tegument protein; Provisional

Probab=80.45  E-value=5.2  Score=26.89  Aligned_cols=23  Identities=43%  Similarity=0.834  Sum_probs=15.9

Q ss_pred             CceEEEEEEEcCC-CceEEEEEEE
Q psy11568         44 HSTVYRCRASNEA-GVILSRFVHV   66 (116)
Q Consensus        44 d~G~y~C~a~n~~-g~~~~~~~~v   66 (116)
                      .+|.|.|...|.. |.+....+.|
T Consensus       144 taG~Y~CvLrN~tHglv~~rf~iv  167 (348)
T PHA03189        144 TAGMYECVLRNETHGLVLQRFVIV  167 (348)
T ss_pred             ccceEEEEeccccceeeeEEeeee
Confidence            7899999999984 5444433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		3e-11
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		6e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		3e-11
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-06
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-11
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-11
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		5e-06

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1   MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
           M  ++W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+
Sbjct: 33  MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92
Query: 61  SRFVHVKA 68
           SR VHV+A
Sbjct: 93  SRDVHVRA 100

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 78  QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           +GP+F  EP  R +FSN +G  ++C A G+P P+I W+
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 39

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1   MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
           M  ++W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+
Sbjct: 39  MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 98
Query: 61  SRFVHVKA 68
           SR VHV+A
Sbjct: 99  SRDVHVRA 106

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 76  DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           D +GP+F  EP  R +FSN +G  ++C A G+P P+I W+
Sbjct: 6   DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 45

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1   MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
           M  ++W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+
Sbjct: 68  MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 127
Query: 61  SRFVHVKA 68
           SR VHV+A
Sbjct: 128 SRDVHVRA 135

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 76  DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           D +GP+F  EP  R +FSN +G  ++C A G+P P+I W+
Sbjct: 35  DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 74

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 1   MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 60
           M  ++W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+
Sbjct: 33  MPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92
Query: 61  SRFVHVKA 68
           SR VHV+A
Sbjct: 93  SRDVHVRA 100

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 78  QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           +GP+F  EP  R +FSN +G  ++C A G+P P+I W+
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 39

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-16
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-08
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-09
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-08
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-06
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-08
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-08
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-07
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-06
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-06
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	8e-05
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-04
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	9e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 72.7 bits (178), Expect = 1e-16
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR VH
Sbjct: 38  WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 97

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA---QGSPTPKIEWL 115
           V+A             +  +          S   + C            + W 
Sbjct: 98  VRAVVA--------QYYEADVNKEHVIRGNS-AVIKCLIPSFVADFVEVVSWH 141

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 51.5 bits (123), Expect = 5e-09
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 16/95 (16%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           R+   +G+L+              S  Y C  +N  G            SV ++L +  P
Sbjct: 264 RVKQVSGTLIIKDAVVE------DSGKYLCVVNNSVGGE----------SVETVLTVTAP 307

Query: 81  LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           L     P              C   G+P   + W+
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 342

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 47.6 bits (113), Expect = 9e-08
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 78  QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           +GP+F  EP  R +FSN +G  ++C A G+P P+I W+
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 39

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 20/119 (16%)

Query: 6   WLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W   +        +     + L +G L           P+     Y+CR  +        
Sbjct: 140 WHTDEEENYFPGAEYDGKYLVLPSGELHI-----REVGPEDGYKSYQCRTKHRLTG---- 190

Query: 63  FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE------SGGRLDCAAQGSPTPKIEWL 115
               +  +    L I  P+    P                   L C AQG P P   W 
Sbjct: 191 --ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY 247

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 3e-16
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W+  D T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR VH
Sbjct: 73  WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 132

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC---AAQGSPTPKIEWL 115
           V+A             +  +          S   + C   +        + W 
Sbjct: 133 VRAVVA--------QYYEADVNKEHVIRGNS-AVIKCLIPSFVADFVEVVSWH 176

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
              ++   A    G            +     D +GP+F  EP  R +FSN +G  ++C 
Sbjct: 10  WLMLFAAVALIACGSQTLA-------ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62

Query: 104 AQGSPTPKIEWL 115
           A G+P P+I W+
Sbjct: 63  ASGNPMPEIIWI 74

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 15  AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSL 74
           A V + R+   +G+L+           +  S  Y C  +N  G      V          
Sbjct: 294 AVVLNDRVKQVSGTLIIKDA-----VVE-DSGKYLCVVNNSVGGESVETV---------- 337

Query: 75  LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           L +  PL     P              C   G+P   + W+
Sbjct: 338 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.4 bits (115), Expect = 7e-08
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 19/98 (19%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQG 79
            I  S   L          + +    +Y+C   N+     +   + +             
Sbjct: 383 AIGHSESVLRI-----ESVKKE-DKGMYQCFVRNDRESAEASAELKLGGRFDP------- 429

Query: 80  PLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
           P+ R       E + E G    L C A G+PTP+I W 
Sbjct: 430 PVIRQAFQ---EETMEPGPSVFLKCVAGGNPTPEISWE 464

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 21/120 (17%)

Query: 6   WLIRDNTVI--AYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W   +          D +   L +G L           P+     Y+CR  +        
Sbjct: 175 WHTDEEENYFPGAEYDGKYLVLPSGELHI-----REVGPEDGYKSYQCRTKHRLTG---- 225

Query: 63  FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES----GG---RLDCAAQGSPTPKIEWL 115
               +  +    L I  P+    P        +     G     L C AQG P P   W 
Sbjct: 226 --ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY 283

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 22/114 (19%)

Query: 6   WLIRDNTVI---AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W   D   I     +   R+      L              H+  + C A N AG     
Sbjct: 654 WT-LDGQAISEDLGITTSRVGRRGSVLTI-----EAVEAS-HAGNFTCHARNLAGHQ--- 703

Query: 63  FVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                     + L++   P + +EP  +         +++C A G P P++ W 
Sbjct: 704 -------QFTTPLNVYVPPRWILEPTDKAFAQGSDA-KVECKADGFPKPQVTWK 749

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 11/69 (15%)

Query: 47  VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
           +Y+C A ++ GV                L++ G  +  +   +   + E+   + C   G
Sbjct: 504 LYKCIAKSKVGVA-EHSAK---------LNVYGLPYIRQMEKKAIVAGETL-IVTCPVAG 552

Query: 107 SPTPKIEWL 115
            P   I W 
Sbjct: 553 YPIDSIVWE 561

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 16/111 (14%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W  RDN  +   +  ++   NG+L+                 Y C A N+ G      + 
Sbjct: 560 WE-RDNRALPINRKQKV-FPNGTLIIENVERNS-----DQATYTCVAKNQEGYSARGSLE 612

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
           V    V+ L     P                   L C+  G   P  I+W 
Sbjct: 613 V---QVMVL-----PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 67.9 bits (166), Expect = 6e-15
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W   + T +    D R ++ +GSL+     +        +  Y+C A+N  G I+SR   
Sbjct: 42  WK-LNGTDVDIGMDFRYSVVDGSLLINNPNK-----TQDAGTYQCIATNSFGTIVSREAK 95

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL 115
           ++   +          F+             G  L C     S      W+
Sbjct: 96  LQFAYL--------ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI 138

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W   D   IA  +  R   SNG L  P F +        +  Y C A N  G  +++   
Sbjct: 239 WRRADGKPIA--RKARRHKSNGILEIPNFQQE------DAGSYECVAENSRGKNVAKGQ- 289

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                    L        ++       + E     +C A G P P   WL
Sbjct: 290 ---------LTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 16/115 (13%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAG--VIL 60
           W+  +           ++   G+L             V       Y C  +N      +L
Sbjct: 137 WI-FNEYPSYQDNRRFVSQETGNLYIA---------KVEKSDVGNYTCVVTNTVTNHKVL 186

Query: 61  SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                +   +   + + + P   ++ P        +  +L+C A G+P P I W 
Sbjct: 187 GPPTPLILRNDGVMGEYE-PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 79  GPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
           GP+F  EP +     +      +L C  +G+P P I W 
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWK 43

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 64.5 bits (157), Expect = 1e-13
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 15/111 (13%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W   + T +    D R  L  G L+              +  Y+C A+N  G ++SR   
Sbjct: 41  WK-MNGTELKMGPDSRYRLVAGDLVISNP-----VKAKDAGSYQCVATNARGTVVSREAS 94

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL 115
           ++ G +          F  E     + +   G    C+     P     WL
Sbjct: 95  LRFGFL--------QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 18/95 (18%), Positives = 24/95 (25%), Gaps = 16/95 (16%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           +   S   L                  Y C A N  G            +    + I   
Sbjct: 251 KWLSSEPLLHIQNVDFE------DEGTYECEAENIKGRD----------TYQGRIIIHAQ 294

Query: 81  LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
              ++     E    S  R  C A G P P + WL
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 9/113 (7%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           WL+ +          R    + G+L       +          Y C A++    I     
Sbjct: 136 WLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS------DLGNYSCFATSHIDFITKSVF 189

Query: 65  HVKAGSVVSLLDI--QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
              +   ++  D     P  + + P            L+C A G+P P+I+W 
Sbjct: 190 SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 78  QGPLFRIEPPYR--FEFSNESGGRLDCAAQGSPTPKIEWL 115
            GP+F  +P +    E S E    L C A+ +P     W 
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWK 42

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 6   WLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           W      +     D R+  L +G+L       +  +P   S VYRC A N A        
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGALQI-----SRLQPG-DSGVYRCSARNPASTRTGNEA 208

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
            V    ++S   +   L+ ++ P            L+C   G P P   WL
Sbjct: 209 EV---RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL 256

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVILSRF 63
           W  +D  ++A   D R   L NGSL+      +         +Y+C AS  ++G I+SR 
Sbjct: 56  WK-KDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP-DEGLYQCEASLGDSGSIISRT 113

Query: 64  VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
             V          + GPL  +               L C   G P P I W 
Sbjct: 114 AKVM---------VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 17/110 (15%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           WL R   VI         L   +L+     +        S  Y C  + +   I      
Sbjct: 255 WL-RGEEVIQLRSKKYSLLGGSNLLISNVTDD------DSGTYTCVVTYKNENI------ 301

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
               S  + L +  P + +  P             +CA  G P P + W+
Sbjct: 302 ----SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 6   WLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
           W  R++      KD R+++   +G+L+      +G RP+ +   Y+C A N+ G  LS  
Sbjct: 51  WT-RNSRFFNIAKDPRVSMRRRSGTLVIDFR--SGGRPEEYEGEYQCFARNKFGTALSNR 107

Query: 64  VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL 115
           + ++            PL+  E          +   L C    G P+P I W+
Sbjct: 108 IRLQVSKS--------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWM 152

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           +    N +L      E        S  Y C ASN+ G I               + ++  
Sbjct: 269 KFENFNKALRITNVSEE------DSGEYFCLASNKMGSIRHTIS----------VRVKAA 312

Query: 81  LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
            + ++ P     +    GRL C A G+P P ++W+
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWM 347

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           W+      I    D R++   NG L F          D+ +  Y C A       + +  
Sbjct: 151 WMSSSMEPITQ--DKRVSQGHNGDLYF----SNVMLQDMQTD-YSCNARFHFTHTIQQKN 203

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG---RLDCAAQGSPTPKIEWL 115
                 + +    +     + P           G    L+C A G PTP I W 
Sbjct: 204 PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 8/52 (15%), Positives = 16/52 (30%)

Query: 64  VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           + +     +     Q P    +              ++C A+G+P P   W 
Sbjct: 1   IEIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWT 52

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 64
           W++    + +   +    ++  +++F        +      VY+C  SNE G +L+  FV
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIF-----RDTQIS-SRAVYQCNTSNEHGYLLANAFV 399

Query: 65  HV 66
            V
Sbjct: 400 SV 401

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 19/114 (16%)

Query: 6   WLIRDNTVIAY----VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
           W   +   ++     +  +     + +L               + +Y+C  + E G    
Sbjct: 37  WFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSE 90

Query: 62  RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
             V+VK         I   L     P   EF       + C    S  P I W 
Sbjct: 91  ATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 54.5 bits (131), Expect = 4e-10
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 19/114 (16%)

Query: 6   WLIRDNTVIAYVKDLRIA----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
           +  ++   +    + RI      S   L+F               VY C   N  G    
Sbjct: 246 YF-KNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE------DEGVYTCEVDNGVGKPQK 298

Query: 62  RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
             + +   +VVS      P +  +P             + C   G P P + W 
Sbjct: 299 HSLKL---TVVSA-----PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 344

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 18/112 (16%)

Query: 6   WLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           W  +D     + +    +    GSL+F     +          Y+C A   AGV  SR +
Sbjct: 41  WK-KDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQCFAETPAGVASSRVI 93

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
             +   +             +   +         +LDC      P P I W 
Sbjct: 94  SFRKTYL--------IASPAKTHEKTPIEGRP-FQLDCVLPNAYPKPLITWK 136

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 13/103 (12%)

Query: 19  DLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDI 77
           D RI    +G+L F    +           Y C A N A         V     +  +  
Sbjct: 152 DRRITAGPDGNLYFTIVTKEDVS---DIYKYVCTAKNAAVDEEV----VLVEYEIKGVTK 204

Query: 78  QGPLFRIEPPYRFEFSNESGGR-----LDCAAQGSPTPKIEWL 115
               ++ EP  ++   +          + C    +P     + 
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 53.3 bits (128), Expect = 6e-10
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 6/111 (5%)

Query: 6   WLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           W  ++   ++  +    +    G +            D     Y C A N  G  +S   
Sbjct: 40  WR-KNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRD--DAPYECVAENGVGDAVSADA 96

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
            +             P+    P  R      +   + C A G+PTP I W+
Sbjct: 97  TLTI-YEGDKTPAGFPVITQGPGTRVIEVGHTV-LMTCKAIGNPTPNIYWI 145

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.4 bits (128), Expect = 9e-10
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 5   LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           LW   +N  +     L+++  N +L               +  Y+C   N      S  V
Sbjct: 143 LWW-VNNQSLPVSPRLQLSNGNRTLTLFNVTRN------DTASYKCETQNPVSARRSDSV 195

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
            +            GP      P    + +     L C A  +P  +  W +
Sbjct: 196 ILNVLY--------GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 5   LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           LW   +   +     L+++  N +L               +  Y C   N      S  V
Sbjct: 499 LWW-VNGQSLPVSPRLQLSNGNRTLTLFNVTRN------DARAYVCGIQNSVSANRSDPV 551

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
            +    V+   D       I PP     S  +   L C +  +P+P+  W I
Sbjct: 552 TLD---VLYGPDT----PIISPPDSSYLSGAN-LNLSCHSASNPSPQYSWRI 595

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 5   LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           LW   +N  +     L+++  N +L                  Y C   NE  V  S  V
Sbjct: 321 LWW-VNNQSLPVSPRLQLSNDNRTLTLLSVTRN------DVGPYECGIQNELSVDHSDPV 373

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
            +          + GP      P    +       L C A  +P  +  WLI
Sbjct: 374 ILNV--------LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 10/95 (10%), Positives = 18/95 (18%), Gaps = 14/95 (14%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
            I   N SL+     +        +  Y         V                +  + P
Sbjct: 65  EIIYPNASLLIQNIIQN------DTGFYTLHVIKSDLVNEEATGQF-------RVYPELP 111

Query: 81  LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
              I         ++      C  +        W 
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWW 145

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 14/99 (14%)

Query: 18  KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLD 76
            D  I      L      E       +S +Y C+A+N A     +    +   + +    
Sbjct: 417 IDGNIQQHTQELFISNITEK------NSGLYTCQANNSASGHSRTTVKTITVSAEL---- 466

Query: 77  IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
              P   I         ++      C  +   T  + W+
Sbjct: 467 ---PKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV 502

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           R+ L +GSL F               VY C A N  G  +S    ++   +         
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLEVAIL-------RD 112

Query: 81  LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
            FR  P        E    ++C   +G P P I W 
Sbjct: 113 DFRQNPSDVMVAVGEP-AVMECQPPRGHPEPTISWK 147

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-- 62
           W      V     + RI  L +G+L      ET          Y C A+N AGV  S   
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEET------DQGKYECVATNSAGVRYSSPA 195

Query: 63  --FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
             +V V+  +         P F I P         +   + C A GSP P ++W+
Sbjct: 196 NLYVRVQNVA---------PRFSILPMSHEIMPGGNV-NITCVAVGSPMPYVKWM 240

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 8/111 (7%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FV 64
           W  +    +   +   I     +             D    VY C A N  G I     +
Sbjct: 40  WN-KKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRD--ENVYECVAQNSVGEITVHAKL 96

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
            V        L    P   + P  +      +   + CAA G+P P+I W 
Sbjct: 97  TVLREDQ---LPSGFPNIDMGPQLKVVERTRTA-TMLCAASGNPDPEITWF 143

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 49.9 bits (119), Expect = 9e-09
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 14/98 (14%)

Query: 25  SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV-------KAGSVVSLLDI 77
           +   L+F             +  Y CR +N      S++  +            V  +  
Sbjct: 63  NTSELIFNAVHVK------DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116

Query: 78  QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                 +EP  +      +   L C A GSP P  +W 
Sbjct: 117 SKLQICVEPTSQKLMPGSTL-VLQCVAVGSPIPHYQWF 153

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 21/119 (17%)

Query: 2   YVLLWLIRDNTVIAYVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEA 56
             + W    N         RI++      + +L               + +Y+C  + E 
Sbjct: 33  KDISWF-SPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAED 85

Query: 57  GVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           G      V+VK         I   L     P   EF       + C    S  P I W 
Sbjct: 86  GTQSEATVNVK---------IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 18/113 (15%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           W       +   KD+R   LSN  L        G +       YRC     A   ++   
Sbjct: 134 WK-HKGRDVILKKDVRFIVLSNNYLQI-----RGIKKT-DEGTYRCEGRILARGEINF-- 184

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
                  + ++    P  +         +   G    L C A G P P + W 
Sbjct: 185 -----KDIQVIVNVPPTVQARQS-IVNATANLGQSVTLVCDADGFPEPTMSWT 231

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 18/113 (15%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           WL   N  +  + D R A L+N +L      ++         +YRC    EA   +    
Sbjct: 36  WL-YHNEEVTTISDNRFAMLANNNLQILNINKS------DEGIYRCEGRVEARGEID--- 85

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
                    ++ +  P     P   F  + E G      C A GSP P I W 
Sbjct: 86  -----FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 133

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 27/113 (23%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 6   WLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           WL   N  +  + D R A L+N +L                 +YRC    EA   +    
Sbjct: 132 WL-YHNEEVTTISDNRFAMLANNNLQI-----LNINKS-DEGIYRCEGRVEARGEID--- 181

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQGSPTPKIEWL 115
                    ++ +  P     P   F  + E G      C A GSP P I W 
Sbjct: 182 -----FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 47  VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
           +YRC+A++  G      V          L+I   L   E     EF       + C    
Sbjct: 74  IYRCQATDAKGQTQEATVV---------LEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 124

Query: 107 SPTPKIEWL 115
           SP P + WL
Sbjct: 125 SPAPAVSWL 133

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           R+   +G+L F    +     D     Y C A N  G  +SR   ++   +  L      
Sbjct: 59  RVQFKDGALFFYRTMQGKKEQD--GGEYWCVAKNRVGQAVSRHASLQ---IAVL----RD 109

Query: 81  LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
            F    P     +      L+C   +G P P + W+
Sbjct: 110 DF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWI 144

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 24/125 (19%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W+ +D T +  V   R+ +    L            +  S  Y CR      V+    V 
Sbjct: 43  WV-KDGTGL--VPSERVLVGPQRLQVL-----NASHE-DSGAYSCRQRLTQRVLCHFSVR 93

Query: 66  V------------KAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG---RLDCAAQGSPTP 110
           V            +  +  + +D   P +        +          R  C A G+PTP
Sbjct: 94  VTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP 153

Query: 111 KIEWL 115
            I WL
Sbjct: 154 SISWL 158

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 47  VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
            Y C   N+ G I   + + V   S         P+ +   P        S     C   
Sbjct: 194 NYTCVVENKFGSIRQTYTLDVLERSPHR------PILQAGLPANQTAVLGSDVEFHCKVY 247

Query: 106 GSPTPKIEWL 115
               P I+WL
Sbjct: 248 SDAQPHIQWL 257

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 47.4 bits (113), Expect = 6e-08
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W      +  +     I  +   L      ++         +Y C A+N  G  +     
Sbjct: 41  WTRNKILIKLFDTRYSIRENGQLLTILSVEDS------DDGIYCCTANNGVGGAVESCGA 94

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           +     V +     P     P             L C   G+P P + W+
Sbjct: 95  L----QVKM----KPKITRPPINVKIIEGLKA-VLPCTTMGNPKPSVSWI 135

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 48.1 bits (114), Expect = 7e-08
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 17/111 (15%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W+ + +++              S++     ET       +  Y     +EA         
Sbjct: 82  WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET------QAGEYLLFIQSEAT-------- 127

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
                + ++      L+ +  PY      E+   L C ++  P P +EW++
Sbjct: 128 -NYTILFTVSIRNTLLYTLRRPYFR--KMENQDALVCISESVPEPIVEWVL 175

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 21/111 (18%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W++ D+   +  ++    +     +           ++  T  RC A NE G   +R   
Sbjct: 173 WVLCDSQGESCKEESPAVVKKEEKVLH---------ELFGTDIRCCARNELGRECTRLFT 223

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
           +                +   P  F    E    + C A   +    + W 
Sbjct: 224 I----------DLNQTPQTTLPQLFLKVGEP-LWIRCKAVHVNHGFGLTWE 263

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 14/71 (19%)

Query: 45  STVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA 104
           S+ Y   + +   +  +             L  Q     +      E    +   L    
Sbjct: 27  SSSYPMVSESPEDLGCA-------------LRPQSSGT-VYEAAAVEVDVSASITLQVLV 72

Query: 105 QGSPTPKIEWL 115
                    W+
Sbjct: 73  DAPGNISCLWV 83

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 8/74 (10%), Positives = 17/74 (22%), Gaps = 15/74 (20%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLD 101
            +  Y C +S                   +L+ I    F        ++  +        
Sbjct: 301 DTGYYTCSSSKHPSQ-------------SALVTIVEKGFINATNSSEDYEIDQYEEFCFS 347

Query: 102 CAAQGSPTPKIEWL 115
              +  P  +  W 
Sbjct: 348 VRFKAYPQIRCTWT 361

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-V 64
           W  +    ++  +   I   +GS             D    +Y C ASN  G I     +
Sbjct: 40  WN-KKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRD--EAIYECVASNNVGEISVSTRL 96

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
            V        +    P   + P  +      +   + CAA G+P P+I W 
Sbjct: 97  TVLR---EDQIPRGFPTIDMGPQLKVVERTRTA-TMLCAASGNPDPEITWF 143

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 47.1 bits (112), Expect = 8e-08
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 6   WLIRDNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
           W+ +D  V+  +  L I +S     G L       +       +  Y C+  +     +S
Sbjct: 36  WV-KDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS------DAGRYWCQVEDGGETEIS 88

Query: 62  RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
           + V +   +V  +     P F +EP       N    +L C A G P P  I W 
Sbjct: 89  QPVWL---TVEGV-----PFFTVEPKDLAVPPNAP-FQLSCEAVGPPEPVTIVWW 134

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 47.9 bits (114), Expect = 9e-08
 Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 22/99 (22%)

Query: 20  LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQ 78
           +    S   L            +  S  Y C A N AG   S   + VK           
Sbjct: 340 MSFVESVAVLEM-----YNLSVE-DSGDYTCEAHNAAGSASSSTSLKVKEP--------- 384

Query: 79  GPLFRIEPPYRFEFSNESGGR--LDCAAQGSPTPKIEWL 115
            P+FR +P          G    L+C  QG+P  ++ W 
Sbjct: 385 -PVFRKKP---HPVETLKGADVHLECELQGTPPFQVSWH 419

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 20/114 (17%)

Query: 6   WLIRDNTVIAYVKDLRIALSN--GSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W  +++T +      ++   N   SL+                  Y C+A N  G + S 
Sbjct: 39  WY-KEHTKLRSAPAYKMQFKNNVASLVINKVDHS-------DVGEYTCKAENSVGAVASS 90

Query: 63  F-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
             + +K   +        P F  +     E         +C   GS   ++ W 
Sbjct: 91  AVLVIKERKL-------PPSFARKLKDVHETLGFPV-AFECRINGSEPLQVSWY 136

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 18/113 (15%)

Query: 6   WLIRDNTVIAYVKDLRIALS--NGSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W  +D  ++    +L+ +      +L               H   Y C ASN  G   S 
Sbjct: 135 WY-KDGELLKDDANLQTSFIHNVATLQILQTDQS-------HVGQYNCSASNPLGTASSS 186

Query: 63  FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                    ++L + + P F    P   + +    G   C   G+   KI W 
Sbjct: 187 AK-------LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 47  VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
            Y C ASN AG       + V+            P F  +         +   R +C   
Sbjct: 267 QYTCYASNVAGKDSCSAQLGVQEP----------PRFIKKLEPSRIVKQDEHTRYECKIG 316

Query: 106 GSPTPKIEWL 115
           GSP  K+ W 
Sbjct: 317 GSPEIKVLWY 326

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 48  YRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFRIEPPYRFEFSNESGGRLDCAAQG 106
           Y+C+ASN+ G            + V  + ++  P F  +         E   +L    +G
Sbjct: 455 YQCKASNDVGSD----------TCVGSITLKAPPRFVKKLSDISTVVGEEV-QLQATIEG 503

Query: 107 SPTPKIEWL 115
           +    + W 
Sbjct: 504 AEPISVAWF 512

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 24/115 (20%)

Query: 6   WLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
           W  +DN  I    + ++ L  +  +L      +        +  Y C ASN AG      
Sbjct: 39  WA-KDNREIRPGGNYKMTLVENTATLTVLKVTKG------DAGQYTCYASNVAGKDSCSA 91

Query: 64  ---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
              V               P F  +         +   R +C   GSP  K+ W 
Sbjct: 92  QLGVQEP------------PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 27/116 (23%)

Query: 6   WLIRDNTVIAYVKDLRIAL--SNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W  +D T I      R++   S   L       E        S  Y C A N AG   S 
Sbjct: 133 WY-KDETEIQESSKFRMSFVESVAVLEMYNLSVE-------DSGDYTCEAHNAAGSASSS 184

Query: 63  F---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
               V               P+FR +P             L+C  QG+P  ++ W 
Sbjct: 185 TSLKVKEP------------PVFRKKPHPVETLKGADV-HLECELQGTPPFQVSWH 227

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 21/118 (17%)

Query: 6   WLIRDNTVIAYVKDLR--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 63
           WL  +   +    D R  ++ +NG+L       +          Y C  S+ +       
Sbjct: 44  WL-LNEFPVFITMDKRRFVSQTNGNLYIANVEAS------DKGNYSCFVSSPSITKSVF- 95

Query: 64  VHVKAGSVVSLLDIQGPLFRIEPPY-RFEFSNES---GG--RLDCAAQGSPTPKIEWL 115
                   + L+ I     +  P     +F +     G    L+C A G+P P I W 
Sbjct: 96  -----SKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR 148

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 44  HSTVYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC 102
            +TVY+ RA+N+ G +     + V+  +      I  P   +E              +  
Sbjct: 73  DATVYQVRATNQGGSVSGTASLEVEVPA-----KIHLPKT-LEGMGAVHALRGEVVSIKI 126

Query: 103 AAQGSPTPKIEWL 115
              G P P I W 
Sbjct: 127 PFSGKPDPVITWQ 139

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
               Y C A +         V       +++L+   P        +     ES   + C 
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVV-----RQLTVLERVAPTITGNLENQTTSIGESI-EVSCT 689

Query: 104 AQGSPTPKIEWL 115
           A G+P P+I W 
Sbjct: 690 ASGNPPPQIMWF 701

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 11/72 (15%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
            S +Y+C A N+ G              V    +         P       ES   L C 
Sbjct: 524 VSALYKCEAVNKVGRG----------ERVISFHVTRGPEITLQPDMQPTEQESV-SLWCT 572

Query: 104 AQGSPTPKIEWL 115
           A  S    + W 
Sbjct: 573 ADRSTFENLTWY 584

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 47  VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAA 104
           +Y C AS+            K  + V + +   P                G   R+    
Sbjct: 304 LYTCAASSGLM-------TKKNSTFVRVHE--KPFVAFGSGMESLVEATVGERVRIPAKY 354

Query: 105 QGSPTPKIEWL 115
            G P P+I+W 
Sbjct: 355 LGYPPPEIKWY 365

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 10/75 (13%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGR--LD 101
            +  Y    +N            K   VVSL+    P    +       S + G    L 
Sbjct: 392 DTGNYTVILTNPIS-------KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT 444

Query: 102 CAAQGSPTP-KIEWL 115
           C     P P  I W 
Sbjct: 445 CTVYAIPPPHHIHWY 459

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
           ++ +  C A        S         +V ++  +     + P +  E S      L+C 
Sbjct: 194 YAGMVFCEAKINDESYQSIM------YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247

Query: 104 AQGSPTPKIEW 114
           A+      I++
Sbjct: 248 ARTELNVGIDF 258

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 5/71 (7%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
            +  Y+C            +V+V+         I     +    Y  E  N++   + C 
Sbjct: 97  DTGAYKCFYRETDLAS-VIYVYVQ---DYRSPFIASVSDQHGVVYITENKNKT-VVIPCL 151

Query: 104 AQGSPTPKIEW 114
              S       
Sbjct: 152 GSISNLNVSLC 162

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 15/71 (21%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
              ++ C  +  A V L                +  P   I+       + ++   L   
Sbjct: 8   AVALWLCVETRAASVGLPSVS------------LDLPRLSIQKD---ILTIKANTTLQIT 52

Query: 104 AQGSPTPKIEW 114
            +G       W
Sbjct: 53  CRGQRDLDWLW 63

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 17/114 (14%)

Query: 6   WLIRDNTVI---AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           WL ++         +   ++   + SL+          P      Y C   NE G I   
Sbjct: 53  WL-KNGKEFKQEHRIGGYKVRNQHWSLIM-----ESVVPS-DKGNYTCVVENEYGSINHT 105

Query: 63  F-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
           + + V   S         P+ +   P              C       P I+W+
Sbjct: 106 YHLDVVERSRHR------PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI 153

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 15/96 (15%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
              + NG L    +       +     Y C  + + G  +   V            I+ P
Sbjct: 83  NRRVKNGDLWIANY-----TSNDSHRRYLCTVTTKNGDCVQGIVR---------SHIRKP 128

Query: 81  LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
              I   Y     ++ G  L C          I W 
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWY 164

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
            S  Y C    +   I +  V  +   +  +         I  P       E    + C 
Sbjct: 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEP-ANITCT 251

Query: 104 AQGSPTPK----IEWL 115
           A  +        I+W 
Sbjct: 252 AVSTSLLVDDVLIDWE 267

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 17/110 (15%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W+ + +++              S++     ET       +  Y     +EA         
Sbjct: 82  WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET------QAGEYLLFIQSEAT-------- 127

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                + ++      L+ +  P  +    E+   L C ++  P P +EW+
Sbjct: 128 -NYTILFTVSIRNTLLYTLRRP--YFRKMENQDALVCISESVPEPIVEWV 174

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 13/75 (17%), Positives = 17/75 (22%), Gaps = 24/75 (32%)

Query: 44  HSTVYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL 100
               Y   A N+       F   +  K            P    E          S  + 
Sbjct: 389 QPGEYIFHAENDDAQFTKMFTLNIRRK------------PQVLAEA---------SASQA 427

Query: 101 DCAAQGSPTPKIEWL 115
            C + G P P   W 
Sbjct: 428 SCFSDGYPLPSWTWK 442

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 7/73 (9%), Positives = 13/73 (17%), Gaps = 13/73 (17%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEP-PYRFEFSNESGGRLDC 102
            +  Y C +S          +  K                       +E           
Sbjct: 301 DTGYYTCSSSKHPSQSALVTIVEK------------GFINATNSSEDYEIDQYEEFCFSV 348

Query: 103 AAQGSPTPKIEWL 115
             +  P  +  W 
Sbjct: 349 RFKAYPQIRCTWT 361

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 12/81 (14%)

Query: 36  ETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE 95
           E     ++  T  RC A NE G   +R            +D+     +   P  F    E
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLF---------TIDLNQT-PQTTLPQLFLKVGE 243

Query: 96  SGGRLDCAAQG-SPTPKIEWL 115
               + C A   +    + W 
Sbjct: 244 P-LWIRCKAVHVNHGFGLTWE 263

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 10/72 (13%), Positives = 17/72 (23%), Gaps = 4/72 (5%)

Query: 47  VYRCRASNEAGVILS---RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
           V     +N++ V  S     V      +   L  Q     +      E    +   L   
Sbjct: 13  VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVL 71

Query: 104 AQGSPTPKIEWL 115
                     W+
Sbjct: 72  VDAPGNISCLWV 83

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 13/72 (18%)

Query: 47  VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCA 103
           VY C A+NE G + +   + ++A           P F    P + ++    G   RL   
Sbjct: 77  VYTCIATNEVGEVETSSKLLLQAT----------PQFHPGYPLKEKYYGAVGSTLRLHVM 126

Query: 104 AQGSPTPKIEWL 115
             G P P + W 
Sbjct: 127 YIGRPVPAMTWF 138

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 24  LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFR 83
           +    L       +       +  Y+C         +S+  +         + ++G  + 
Sbjct: 65  IVVSQLRITSLQLS------DTGQYQCLVFLGHQTFVSQPGY---------VGLEGLPYF 109

Query: 84  IEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
           +E P     +  +   L C AQG P P  + WL
Sbjct: 110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL 142

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 5   LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV 64
           + L+R+       K +         +              S  Y C+         S  +
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL------DSNTYVCKTMVNGRESTSTGI 175

Query: 65  HVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
            +K    V+ +  + P  ++EP        E+  ++ C+A  +       L
Sbjct: 176 WLK----VNRVHPEPPQIKLEPSKLVRIRGEA-AQIVCSATNAEVGFNVIL 221

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
           H   Y CR       +          +    L +  PL       R +F + S   + C 
Sbjct: 78  HDGNYLCRMKLGETEV----------TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCT 127

Query: 104 AQGSPTPKIEWL 115
               P P ++WL
Sbjct: 128 VNAFPHPHVQWL 139

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 7/85 (8%)

Query: 31  FPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRF 90
            P   + GF        Y C+ +     + S          V  L +      +      
Sbjct: 139 VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAY------YVYRLQVSSINVSVNAVQTV 192

Query: 91  EFSNESGGRLDCAAQGSPTPKIEWL 115
               E+   L C   G+     EW 
Sbjct: 193 VRQGEN-ITLMCIVIGNEVVNFEWT 216

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 11/80 (13%)

Query: 47  VYRCRASNEAG-----VILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE----SG 97
            Y     +        V LS   + +A +    L       +          +      G
Sbjct: 73  KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132

Query: 98  G--RLDCAAQGSPTPKIEWL 115
               L C   G P P++ WL
Sbjct: 133 KALNLTCNVWGDPPPEVSWL 152

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 47  VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
            Y  +A+N +G   S   + VKA +         P F ++          S  RL     
Sbjct: 77  RYSLKATNGSGQATSTAELLVKAETAP-------PNF-VQRLQSMTVRQGSQVRLQVRVT 128

Query: 106 GSPTPKIEWL 115
           G PTP +++ 
Sbjct: 129 GIPTPVVKFY 138

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 6   WLIRDNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS 61
           W  +    +   KD     R+ L +GSL F               VY C A N  G  +S
Sbjct: 43  WY-KGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVS 100

Query: 62  RFVHVK 67
               ++
Sbjct: 101 HDASLE 106

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 18/115 (15%)

Query: 6   WLIRDNTVIAYVKD--LRIALSNGSLMF-PPFPETGFRPDVHSTVYRCRASNEAGVILSR 62
           W  ++++      +   R+   +G+L   P   E        S  Y C   N +      
Sbjct: 59  WH-KNDSARTVPGEEETRMWAQDGALWLLPALQE-------DSGTYVCTTRNASYCD-KM 109

Query: 63  FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESG--GRLDCAAQGSPTPKIEWL 115
            + ++   V    D   P F   P      ++       L    +     KI+W 
Sbjct: 110 SIELR---VFENTDAFLP-FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY 160

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 44  HSTVYRCRASNEAGVI---LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL 100
            +  YRC  +         ++R + ++   +    +   P+  I P      S  S   +
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELR---IKKKKEETIPVI-ISPLKTISASLGSRLTI 246

Query: 101 DCAA---QGSPTPKIEW 114
            C      G+P   + W
Sbjct: 247 PCKVFLGTGTPLTTMLW 263

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 18/73 (24%)

Query: 44  HSTVYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC 102
               Y    SN        F V+V                    P    +     G L C
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFNVYVNT-----------------KPEILTYDRLVNGMLQC 428

Query: 103 AAQGSPTPKIEWL 115
            A G P P I+W 
Sbjct: 429 VAAGFPEPTIDWY 441

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 11/111 (9%), Positives = 19/111 (17%), Gaps = 11/111 (9%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
            L              I      +M             H     C    E   +LS    
Sbjct: 147 SLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY-----HRLCLHCSVDQEGKSVLSEKFI 201

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL 115
           +K          +           +         + C  +   +     W 
Sbjct: 202 LKVRPA-----FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK 247

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 18/78 (23%)

Query: 44  HSTVYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG-- 98
            S V+ C A+N  G         V  K                I P          G   
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVDK------------GFINIFPMINTTVFVNDGENV 331

Query: 99  RLDCAAQGSPTPK-IEWL 115
            L    +  P P+  +W+
Sbjct: 332 DLIVEYEAFPKPEHQQWI 349

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 47  VYRCRASNEAGVILSRF-VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
           +Y     ++ G   SR  +  +A   + ++++   +       + + + E          
Sbjct: 75  IYEVILKDDRGKDKSRLKLVDEAFKEL-MMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133

Query: 106 GSPTPKIEWL 115
                K+ W 
Sbjct: 134 YVEDLKVNWS 143

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 42.2 bits (99), Expect = 8e-06
 Identities = 9/80 (11%), Positives = 16/80 (20%), Gaps = 11/80 (13%)

Query: 47  VYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLF-RIEPPYRFEFSNES-----G 97
            Y     +                  +      ++                 +      G
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237

Query: 98  G--RLDCAAQGSPTPKIEWL 115
               L C   G P P++ WL
Sbjct: 238 KALNLTCNVWGDPPPEVSWL 257

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 47  VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
            Y C   N+ G I  +   +    V+     +  L    P  +            C    
Sbjct: 86  NYTCVVENKFGSI-RQTYTLD---VLERSPHRPILQAGLPANQTAVLGSDV-EFHCKVYS 140

Query: 107 SPTPKIEWL 115
              P I+WL
Sbjct: 141 DAQPHIQWL 149

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 15/99 (15%), Positives = 22/99 (22%), Gaps = 12/99 (12%)

Query: 21  RIALSNGSLMFPPFPETGFRPDV---HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDI 77
             +     L+           +V   H   Y C AS            V     +     
Sbjct: 156 HFSGVKDRLIVM---------NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKP 206

Query: 78  QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI 116
             P+         E    S  +L C   G  +    W  
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW 245

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 21/118 (17%)

Query: 6   WLIRDNTV-IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF- 63
           W   D+   ++  +  RI      L F P           S  Y C   N +  +  +  
Sbjct: 40  WYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE------DSGHYYCVVRNSSYCLRIKIS 93

Query: 64  VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC------AAQGSPTPKIEWL 115
                             +  +  ++ +      G L C        + +  PK++W 
Sbjct: 94  AKFVENE-------PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY 144

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 42.3 bits (99), Expect = 6e-06
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 15/96 (15%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           R+  S+  + F             +  Y C  S E G      V +        L +  P
Sbjct: 59  RVTFSSSGITFSSVTRK------DNGEYTCMVSEEGGQNYGE-VSIH-------LTVLVP 104

Query: 81  LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
             +         +  +   L C    GSP  +  W 
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWF 140

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 41.9 bits (98), Expect = 8e-06
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 21  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP 80
           R+      + F             +  Y C  S E G             V   L +  P
Sbjct: 62  RVTFLPTGITFKSVTRE------DTGTYTCMVSEEGGNSYG--------EVKVKLIVLVP 107

Query: 81  LFRIEPPYRFEFSNESGGRLDC-AAQGSPTPKIEWL 115
             +         +  +   L C    GSP  +  W 
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWF 143

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 20/110 (18%)

Query: 6   WLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 65
           W++ +    A V       S G  +     +       +     C A N+ G        
Sbjct: 192 WILTELEQSATVMKSGGLPSLGLTLANVTSDL------NRKNVTCWAENDVGRAEVSVQ- 244

Query: 66  VKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL 115
                    +++  P                   +  +  G P P + WL
Sbjct: 245 ---------VNVSFPASVQLHTAVEMHHW----CIPFSVDGQPAPSLRWL 281

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 47  VYRCRASNEAGVILSRFVHVKAGSVVSLL--DIQGPLFRIEPPYRFEFSNESGGRLDC-A 103
           +Y C  ++  G+  S  +  +    +  L  + + P   ++     E   +   R    A
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

Query: 104 AQGSPTPKIEWL 115
            + S   K+ ++
Sbjct: 132 EKLSGNAKVNYI 143

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 10/78 (12%), Positives = 17/78 (21%), Gaps = 9/78 (11%)

Query: 47  VYRCRASNEAGVILSRF---VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES---GG-- 98
            Y  +  +      S       V           +    R + P+  E+ +         
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 239

Query: 99  RLDCAAQGSPTP-KIEWL 115
            L C          I W 
Sbjct: 240 LLKCKVANIKKETHIVWY 257

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 17/78 (21%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSN----ESGG- 98
            +TVY+ RA+N+ G +             + L+++ P  +I  P   E         G  
Sbjct: 73  DATVYQVRATNQGGSVSGT----------ASLEVEVPA-KIHLPKTLEGMGAVHALRGEV 121

Query: 99  -RLDCAAQGSPTPKIEWL 115
             +     G P P I W 
Sbjct: 122 VSIKIPFSGKPDPVITWQ 139

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGR--LD 101
            S  Y+C A      ++S  + +K    V  +    P   + P    E     G    + 
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLK----VQKVIPGPPALTLVPA---ELVRIRGEAAQIV 207

Query: 102 CAAQGSPTPKIEWL 115
           C+A         +L
Sbjct: 208 CSASSVDVNFDVFL 221

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 12/70 (17%)

Query: 47  VYRCRASNEAGVILSR-FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ 105
            Y C A++  G      ++ ++            P F       + +       + C  +
Sbjct: 77  RYDCEAASRIGGHQKSMYLDIEYA----------PKFISNQTIYYSWEGNPI-NISCDVK 125

Query: 106 GSPTPKIEWL 115
            +P   I W 
Sbjct: 126 SNPPASIHWR 135

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGP--LFRIEPPYRFEFSNESGGRLD 101
           +   + C A+ E          +   +    L +     L   + P  + +   S     
Sbjct: 338 NGRSFSCSATLEVAG------QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 391

Query: 102 CAAQGSPTPKIEWL 115
           C A G+P P+++ L
Sbjct: 392 CQAWGNPLPELKCL 405

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 19/109 (17%)

Query: 13  VIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF-VHVKAGSV 71
           +   + + RI+     L F P           +  Y C   N        F + V     
Sbjct: 65  INFRLPENRISKEKDVLWFRPTLLN------DTGNYTCMLRNTTYCSKVAFPLEVVQ--- 115

Query: 72  VSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA-----AQGSPTPKIEWL 115
                       ++ P    +      R+ C         S  P I W 
Sbjct: 116 ----KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY 160

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 5/69 (7%)

Query: 48  YRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG--RLDCAAQ 105
           Y C+ +  +         + A SVV  +    P   +          + G    + C   
Sbjct: 105 YWCQVAQWSI---RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161

Query: 106 GSPTPKIEW 114
                 + W
Sbjct: 162 DCANANVTW 170

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL-FRIEPPYRFEFSNESGGRLDC 102
                 C+  +E+     + + V        L +  P    I       +  ++   L C
Sbjct: 188 DGKNVTCKVEHESFEK-PQLLTVN-------LTVYYPPEVSISGYDNNWYLGQNEATLTC 239

Query: 103 AAQGSPTP-KIEWL 115
            A+ +P P    W 
Sbjct: 240 DARSNPEPTGYNWS 253

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 18/92 (19%)

Query: 25  SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQG-PLFR 83
                   P  E       H     C  +                     L++Q  P   
Sbjct: 192 VISRYRLVPSREA------HQQSLACIVNYHMDRFKESLT----------LNVQYEPEVT 235

Query: 84  IEPPYRFEFSNESGGRLDCAAQGSPTP-KIEW 114
           IE      +      +L C A  +P   +  W
Sbjct: 236 IEGFDGNWYLQRMDVKLTCKADANPPATEYHW 267

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 18/68 (26%)

Query: 48  YRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS 107
           Y C   ++   +      + A S   LL  QG                    L   +   
Sbjct: 83  YICEVEDQKEEVQLLVFGLTANSDTHLL--QG----------------QSLTLTLESPPG 124

Query: 108 PTPKIEWL 115
            +P ++  
Sbjct: 125 SSPSVQCR 132

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 18/69 (26%)

Query: 47  VYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG 106
            Y C   ++   +      + A S   LL  QG                    L   +  
Sbjct: 81  TYICEVEDQKEEVQLLVFGLTANSDTHLL--QG----------------QSLTLTLESPP 122

Query: 107 SPTPKIEWL 115
             +P ++  
Sbjct: 123 GSSPSVQCR 131

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 40  RPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEP-PYRFEFSNESGG 98
            P+ +   + C A+ E          +       L  + GP       P  + +   S  
Sbjct: 149 TPEDNGRSFSCSATLEVA-----GQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203

Query: 99  RLDCAAQGSPTPKIEWL 115
              C A G+P P+++ L
Sbjct: 204 TPMCQAWGNPLPELKCL 220

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 11/72 (15%)

Query: 44  HSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA 103
            S  Y C     +    +  + VKA           P            +      + C 
Sbjct: 67  DSGEYHCVYHFVSAPKANATIEVKAA----------PDI-TGHKRSENKNEGQDAMMYCK 115

Query: 104 AQGSPTPKIEWL 115
           + G P P+  W 
Sbjct: 116 SVGYPHPEWMWR 127

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 99  RLDCAAQGSPTPKIEWL 115
            L C+ +G+P P+I WL
Sbjct: 30  VLQCSVRGTPVPRITWL 46

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 35.0 bits (81), Expect = 9e-04
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 99  RLDCAAQGSPTPKIEWL 115
           R+D    G P P + W 
Sbjct: 24  RMDFKVSGLPAPDVSWY 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.72
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.7
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.7
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.69
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.69
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.69
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.69
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.69
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.68
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.67
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.67
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.67
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.66
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.66
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.65
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.65
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.65
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.64
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.64
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.64
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.64
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.63
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.63
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.63
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.62
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.62
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.61
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.61
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.6
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.59
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.59
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.59
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.59
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.58
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.58
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.58
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.58
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.57
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.57
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.57
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.57
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.56
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.56
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.56
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.56
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.56
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.55
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.55
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.55
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.54
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.54
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.53
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.53
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.53
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.52
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.52
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.52
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.52
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.51
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.51
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.51
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.51
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.51
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.5
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.5
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.49
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.49
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.48
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.48
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.48
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.46
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.45
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.45
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.45
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.45
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.44
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.44
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.44
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.43
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.43
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.42
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.42
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.42
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.42
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.42
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.41
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.4
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.4
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.4
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.4
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.4
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.4
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.39
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.39
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.38
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.37
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.37
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.37
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.37
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.37
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.37
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.36
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.36
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.36
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.36
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.35
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.34
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.34
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.34
1he7_A	126	High affinity nerve growth factor receptor; transf	99.33
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.33
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.33
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.33
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.33
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.33
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.32
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.32
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.32
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.31
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.31
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.31
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.31
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.31
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.31
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.31
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.3
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.3
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.29
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.29
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.29
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.29
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.29
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.29
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.29
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.28
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.27
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.27
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.27
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.27
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.26
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.26
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.26
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.26
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.26
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.25
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.25
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.25
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.25
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.24
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.24
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.24
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.24
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.24
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.23
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.23
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.23
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.23
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.23
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.23
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.23
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.22
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.22
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.21
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.21
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.21
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.21
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.2
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.2
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.2
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.2
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.2
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.2
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.19
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.19
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.19
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.19
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.18
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.18
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.18
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.18
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.18
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.17
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.17
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.16
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.16
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.16
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.15
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.15
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.15
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.15
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.15
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.15
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.14
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.14
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.14
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.14
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.13
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.12
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.12
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.12
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.12
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.11
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.11
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.11
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.1
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.1
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.09
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.09
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.08
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.07
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.06
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.06
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.05
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.04
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.04
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.03
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.02
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.02
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.02
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.01
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.01
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.0
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.0
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.0
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.0
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.98
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.98
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.98
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.98
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.97
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.97
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.97
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.96
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.96
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.96
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.96
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.95
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.95
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.94
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.93
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.93
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.93
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.92
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.92
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.91
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.91
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.91
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.89
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.88
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.88
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.87
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.87
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.86
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.86
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.85
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.83
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.83
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.83
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.83
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.82
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.82
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.82
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.82
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.81
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.81
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.8
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.79
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.78
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.78
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.78
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.77
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.77
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.77
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.77
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.77
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.77
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.76
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.75
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.75
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.74
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.74
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.74
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.73
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.73
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.73
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.72
2ens_A	96	Advanced glycosylation END product-specific recept	98.72
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.72
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.72
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.71
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.69
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.68
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.68
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.68
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.66
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.65
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.64
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.64
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.62
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.62
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.62
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.61
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.61
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.61
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.61
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.6
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	98.6
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.59
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.59
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.59
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.59
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.58
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.58
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.56
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.56
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.55
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.54
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.54
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.54
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.53
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.5
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.5
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.49
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.49
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.48
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.48
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.48
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.47
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.47
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.45
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.44
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.44
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.43
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.42
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.41
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.4
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.4
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.4
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.39
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.39
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.37
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.37
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.35
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.34
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.34
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.31
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.3
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.3
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.29
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.26
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.26
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.25
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.25
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.22
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.22
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.22
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.21
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.19
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.18
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.17
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.16
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.14
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.14
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.14
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.12
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.07
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.06
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.04
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.03
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.02
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.01
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.0
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.0
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.0
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.0
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.0
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	97.99
3khq_A	133	B-cell antigen receptor complex-associated protei	97.98
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	97.97
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	97.95
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	97.94
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	97.94
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	97.93
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	97.93
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.93
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.93
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	97.92
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	97.92
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	97.91
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	97.91
1xt5_A	135	Variable region-containing chitin-binding protein	97.91
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.9
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	97.88
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	97.88
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	97.87
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.87
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	97.87
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.86
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	97.08
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.84
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.83
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	97.82
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.82
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	97.81
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	97.81
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	97.8
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.8
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.78
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	97.78
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.77
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	97.77
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	97.75
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	97.73
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	97.73
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.72
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	97.71
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	97.71
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.7
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	97.7
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	97.7
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.7
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	97.7
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	97.69
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.69
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	97.69
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	97.68
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.67
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	97.66
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	97.65
2ens_A	96	Advanced glycosylation END product-specific recept	97.65
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	97.64
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.64
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	97.62
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	97.62
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	97.61
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.6
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.6
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.6
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.59
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	97.58
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	97.58
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	97.56
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	97.55
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	97.55
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.55
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	97.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	97.53
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.53
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	97.53
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	97.52
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	97.51
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	97.51
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.5
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.5
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	97.49
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	97.49
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	97.49
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	97.48
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	97.47
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	97.45
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	97.45
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	97.44
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	97.44

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.72  E-value=1.9e-17  Score=101.50  Aligned_cols=72  Identities=19%  Similarity=0.355  Sum_probs=58.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+          |.+...+ ....+.+|+++.|.|.+.|
T Consensus        70 ~L~I~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~p----------~~~~~~~-~~~~v~~g~~~~l~C~~~G  132 (203)
T 4fa8_A           70 FLVVTAANIS------HDGNYLCRMKLGETEVTKQEHLSVVKP----------LTLSVHS-ERSQFPDFSVLTVTCTVNA  132 (203)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEEE----------EEEEEEE-EECCSSCSCCEEEEEEEEE
T ss_pred             EEEEccCCHH------HCeEEEEEEEcCCCcEEEEEEEEecCC----------ceeeecc-eeEEEcCCCEEEEEEEcCC
Confidence            6999999766      999999999999887764 55666553          5554444 5666778999999999999


Q ss_pred             cCCceeEEeC
Q psy11568        107 SPTPKIEWLI  116 (116)
Q Consensus       107 ~P~p~i~W~~  116 (116)
                      .|.|.++|++
T Consensus       133 ~P~P~v~W~~  142 (203)
T 4fa8_A          133 FPHPHVQWLM  142 (203)
T ss_dssp             ESCCEEEECC
T ss_pred             CCCCEEEEEE
Confidence            9999999963

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.70  E-value=2.6e-16  Score=94.72  Aligned_cols=92  Identities=16%  Similarity=0.211  Sum_probs=71.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGP   80 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p   80 (116)
                      |.++| +++|..+....   ....++.|.|.++..+      |+|.|+|.+.|. +... ...|.|..+          |
T Consensus        35 ~~v~W-~~~~~~~~~~~---~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~-~~~~~~~~l~V~~~----------p   93 (190)
T 2wv3_A           35 MYSYW-TKNGVELTATR---KNASNMEYRINKPRAE------DSGEYHCVYHFV-SAPKANATIEVKAA----------P   93 (190)
T ss_dssp             EEEEE-EETTEECTTCC---BCCSEEEEEESSCCGG------GCEEEEEEEEET-TEEEEEEEEEEECC----------C
T ss_pred             eEEEE-EECCEECcccc---eEeccEEEEEecCCcc------cCEEEEEEEEeC-CcccccEEEEEecC----------C
Confidence            67999 89998876321   1124458999999766      999999999999 6554 355555553          6


Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus        94 ~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~i~W~  127 (190)
T 2wv3_A           94 DITGHK-RSENKNEGQDAMMYCKSVGYPHPEWMWR  127 (190)
T ss_dssp             EEEEEC-SEEEEETTSCEEEEEEEECSSCCEEEEE
T ss_pred             cccccC-CcceeeCCCcEEEEEEeCccCCCceEEE
Confidence            666665 6778899999999999999999999997

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.70  E-value=2e-16  Score=104.60  Aligned_cols=96  Identities=28%  Similarity=0.441  Sum_probs=74.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      .|.+.|++.+|.++..  ..+....++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+          
T Consensus       234 ~p~i~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~v~~~----------  295 (384)
T 3kld_A          234 VPTILWRRADGKPIAR--KARRHKSNGILEIPNFQQE------DAGSYECVAENSRGKNVAKGQLTFYAQ----------  295 (384)
T ss_dssp             CCEEEEEETTCCCCCT--TCEECTTSCEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEEE----------
T ss_pred             CCcEEEEeCCCccccc--cceecCCCcEEEECCCChh------hCEEEEEEEEcCCCeEEEEEEEEEecC----------
Confidence            3789994446666542  2223334568999999766      999999999999998764 55655553          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       296 P~~~~~~-~~~~v~~g~~v~l~C~~~g~P~p~i~W~  330 (384)
T 3kld_A          296 PNWVQII-NDIHVAMEESVFWECKANGRPKPTYRWL  330 (384)
T ss_dssp             EEEEECC-CCEEECTTCCEEEECEEEEESCCEEEEE
T ss_pred             CccccCC-CceEecCCCCEEEEeECCccCCCeEEEE
Confidence            6666665 6788899999999999999999999997

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.69  E-value=4.3e-16  Score=94.01  Aligned_cols=96  Identities=23%  Similarity=0.460  Sum_probs=72.5

Q ss_pred             cEEEEEccCCeeeecccc--ceEEee---------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKD--LRIALS---------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~--~~~~~~---------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      |.+.| +++|..+.....  .+....         ++.|.|.++..+      |+|.|+|.+.|..|...+  ..|.|..
T Consensus        33 ~~v~W-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~~~~~~l~V~~  105 (195)
T 2c5d_C           33 PEVHW-LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS------DTGQYQCLVFLGHQTFVSQPGYVGLEG  105 (195)
T ss_dssp             CCCEE-EETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCST------TCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             cEEEE-EECCEEcccCCCCceEEEEccccccceeeccEEEEEecccc------CCcEEEEEEEeCCCceecccEEEEEec
Confidence            67899 889998875322  222222         247999999766      999999999998876543  3444443


Q ss_pred             CcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         69 GSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        69 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      +          |.+...+ ....+.+|+.+.|.|.+.|.|.| .++|+
T Consensus       106 ~----------p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~~v~W~  142 (195)
T 2c5d_C          106 L----------PYFLEEP-EDRTVAANTPFNLSCQAQGPPEPVDLLWL  142 (195)
T ss_dssp             S----------CEEEECC-CCEEECTTCCEEEEEEEECSSCCCEEEEE
T ss_pred             C----------CeEEcCC-CcEEEcCCCEEEEEeECCCCCCCCEEEEE
Confidence            3          6666665 66888899999999999999999 99997

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.69  E-value=7.4e-16  Score=92.00  Aligned_cols=96  Identities=25%  Similarity=0.548  Sum_probs=73.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC----CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~----~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~   75 (116)
                      |.+.| +++|..+...........+    +.|.|.++..+      |+|.|+|.+.|..|...+  ..|.|..+      
T Consensus        32 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~~~~~~l~V~~~------   98 (182)
T 1rhf_A           32 PDIQW-VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS------DAGRYWCQVEDGGETEISQPVWLTVEGV------   98 (182)
T ss_dssp             CCEEE-EETTEECCSSEEEEEEEETTEEEEEEEESSCCGG------GCEEEEEEESSCTTCEECCCEEEEEECS------
T ss_pred             CeEEE-EECCeecCCCCceEEEecCCCceEEEEEeecCcc------cCeEEEEEEEcCCCcEEEEEEEEEEecC------
Confidence            67999 8899888653332333332    47999999766      999999999999776543  45555543      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                          |.+...+ ....+..|+.+.|.|.+.|.|.| .++|+
T Consensus        99 ----p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~~v~W~  134 (182)
T 1rhf_A           99 ----PFFTVEP-KDLAVPPNAPFQLSCEAVGPPEPVTIVWW  134 (182)
T ss_dssp             ----CEEEECC-CCEEECTTCCEEEEEEEECSSSCCEEEEE
T ss_pred             ----CeEEecC-cceEecCCCEEEEEeEecCCCCCCEEEEE
Confidence                7776665 66788899999999999999999 99997

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.69  E-value=4.5e-16  Score=107.54  Aligned_cols=97  Identities=29%  Similarity=0.494  Sum_probs=76.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      .|.|+| +++|.++......+....+  ..|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..+        
T Consensus       320 ~p~v~W-~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~~~--------  384 (570)
T 3b43_A          320 EIKVLW-YKDETEIQESSKFRMSFVESVAVLEMYNLSVE------DSGDYTCEAHNAAGSASSSTSLKVKEP--------  384 (570)
T ss_dssp             SCEEEE-EETTEECCCSSSEEEEEETTEEEEEEESCCGG------GCEEEEEEEEBTTBCCEEEEEECEECC--------
T ss_pred             CCEEEE-eECCEECCCCCcEEEEEECCEEEEEECCCCcc------cCEEEEEEEEeCCCEEEEEEEEEecCC--------
Confidence            378999 9999988754443333333  36999999766      999999999999998774 55555543        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                        |.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       385 --P~~~~~~-~~~~~~~G~~v~l~C~~~g~P~p~v~W~  419 (570)
T 3b43_A          385 --PVFRKKP-HPVETLKGADVHLECELQGTPPFQVSWH  419 (570)
T ss_dssp             --CEECSCC-CCEEECTTCCEEEEEEEESSSSCCCEEE
T ss_pred             --CeeecCC-CceeecCCCEEEEEEEEecCCCCEEEEE
Confidence              6665555 6778889999999999999999999997

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.69  E-value=7e-16  Score=93.93  Aligned_cols=107  Identities=13%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCc--E-----
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGS--V-----   71 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~--~-----   71 (116)
                      |.|+| +++|.++....+.+....++  .|.|.++..+      |+|.|+|.+.|..|.... ..+.+....  .     
T Consensus        33 ~~i~W-~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~  105 (212)
T 2r15_A           33 LKVNW-SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN------DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR  105 (212)
T ss_dssp             CEEEE-EETTEECCCCSSEEEEEETTEEEEEEESCCGG------GCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHH
T ss_pred             ceEEE-EECCEEccCCCeEEEEEeCCEEEEEECCCCcc------cCEEEEEEEecCCcceEEEEEEEEeeccchhhhccc
Confidence            78999 99999887544444444444  4999999766      999999999998876553 222221100  0     


Q ss_pred             ee---eeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         72 VS---LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        72 ~~---~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.   ......|.+....+....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus       106 ~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~  152 (212)
T 2r15_A          106 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL  152 (212)
T ss_dssp             HHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEE
T ss_pred             cCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEE
Confidence            00   000001555555557788899999999999999999999997

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.69  E-value=1.8e-15  Score=92.86  Aligned_cols=103  Identities=14%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEee--
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVS--   73 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~--   73 (116)
                      .|.|+| ++||+++....+.+.....  +  .|.|.++..+      |+|.|+|.|.|  |.... ..+.+.......  
T Consensus        32 ~p~i~W-~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~------D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~  102 (207)
T 3rbs_A           32 NAKVNY-IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE------DEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQ  102 (207)
T ss_dssp             CCEEEE-EETTEEECSSSSCEEEECTTTCEEEEEESCCCGG------GCEEEEEEEEE--TTEEEEEEEEECTHHHHHHH
T ss_pred             CCEEEE-EECCEECccCCCEEEEEeCCCCEEEEEECCCChh------hCEEEEEEEEC--CCeEEEEEEEEEccchhhhc
Confidence            389999 9999999754444444433  3  5999999766      99999999999  44442 222111000000  


Q ss_pred             ------e----eccCCCceEecCCCeEEEeCCCcEEEEeeecCc-CCceeEEe
Q psy11568         74 ------L----LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        74 ------~----~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~p~i~W~  115 (116)
                            .    ...+ |.|...+  ...+.+|+.+.|.|.+.|. |.|.++|+
T Consensus       103 ~~~~~~~~~~~~~~~-P~~~~~~--~~~v~~g~~v~l~C~v~g~~P~p~i~W~  152 (207)
T 3rbs_A          103 KEAEFQRQEWIRKQG-PHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWY  152 (207)
T ss_dssp             HHHHHHHHHHHHHTS-SEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEEEE
T ss_pred             ccccccccccccCCC-CceEecC--CcEEcCCCcEEEEEEEeCCCCCCEEEEE
Confidence                  0    0012 6665544  4778899999999999999 99999997

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.68  E-value=3e-15  Score=94.79  Aligned_cols=97  Identities=24%  Similarity=0.357  Sum_probs=75.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~   78 (116)
                      |.++| +++|..+......+....+  ..|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+         
T Consensus        35 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~n~~g~~~~~~~l~V~~~---------   98 (284)
T 2rik_A           35 IKITW-AKDNREIRPGGNYKMTLVENTATLTVLKVTKG------DAGQYTCYASNVAGKDSCSAQLGVQEP---------   98 (284)
T ss_dssp             CEEEE-EETTEECCSSSSEEEEEETTEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECC---------
T ss_pred             CEEEE-EECCEECcCCCcEEEEEcCCEEEEEEecCCcc------cCEEEEEEEEECCceEEEEEEEEccCC---------
Confidence            68999 8999988654443433333  37999999766      999999999999887553 45555543         


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       |.+...+.....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus        99 -p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~  134 (284)
T 2rik_A           99 -PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY  134 (284)
T ss_dssp             -CEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEE
T ss_pred             -CcccccCCCceEecCCceEEEEEEEeeeCCCEEEEE
Confidence             666666546677889999999999999999999997

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.67  E-value=2.4e-15  Score=95.27  Aligned_cols=98  Identities=29%  Similarity=0.482  Sum_probs=74.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      .|.+.| +++|..+......+.....  ..|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+        
T Consensus       128 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~--------  192 (284)
T 2rik_A          128 EIKVLW-YKDETEIQESSKFRMSFVESVAVLEMYNLSVE------DSGDYTCEAHNAAGSASSSTSLKVKEP--------  192 (284)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEEECC--------
T ss_pred             CCEEEE-EECCEECcCCCcEEEEEcCCEEEEEECCCCcc------cCEEEEEEEEcCCCceeEEEEEEEecC--------
Confidence            378999 8999888654333333333  36999999766      999999999999887664 55555543        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                        |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       193 --p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~~~v~W~~  228 (284)
T 2rik_A          193 --PVFRKKP-HPVETLKGADVHLECELQGTPPFQVSWHK  228 (284)
T ss_dssp             --CBCCSCC-CCEEECTTCCEEEEEECBSSSCCEEEEEE
T ss_pred             --CcceeCC-CcceecCCCeEEEEEEEEecCCCEEEEEE
Confidence              6655554 66778899999999999999999999973

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.67  E-value=5.7e-16  Score=107.02  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=76.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      .|.|+| +++|.++...........+.  .|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+        
T Consensus       413 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~v~~~--------  477 (570)
T 3b43_A          413 PFQVSW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSA------DIGEYQCKASNDVGSDTCVGSITLKAP--------  477 (570)
T ss_dssp             SCCCEE-EETTEECCSSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEECCC--------
T ss_pred             CCEEEE-EECCEECcCCCCEEEEEcCCEEEEEECCCChh------hCEEEEEEEEECCCeEEEEEEEEeccC--------
Confidence            378999 99999886543333333332  6899999766      999999999999998774 55555543        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                        |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       478 --P~~~~~~-~~~~~~~g~~~~l~c~~~g~p~~~v~W~  512 (570)
T 3b43_A          478 --PRFVKKL-SDISTVVGEEVQLQATIEGAEPISVAWF  512 (570)
T ss_dssp             --CEEEECC-CCBCCBTTCCEEEEEEEESCSSCCCEEE
T ss_pred             --CcccccC-CCceecCCCeEEEEEEEecCCCCEEEEE
Confidence              7777666 6677788999999999999999999997

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.67  E-value=1.6e-15  Score=91.19  Aligned_cols=99  Identities=28%  Similarity=0.429  Sum_probs=74.1

Q ss_pred             cEEEEEccCCeeeeccc--cceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568          2 YVLLWLIRDNTVIAYVK--DLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~--~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~   76 (116)
                      |.++| +++|..+....  +.+....++  .|.|.++..+      |+|.|+|.+.|..|.... ..+.|....      
T Consensus        35 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~~~~~~~~~l~v~~~~------  101 (194)
T 2a38_A           35 PEVSW-FRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKA------NSGRYSLKATNGSGQATSTAELLVKAET------  101 (194)
T ss_dssp             CEEEE-EESSSBCCTTTSTTCEEEEETTEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECCC------
T ss_pred             CEEEE-EECCEEcccccCCceEEEeCCCEEEEEECCCCcc------cCEEEEEEEEcCCceEeEEEEEEEccCC------
Confidence            68999 88888876432  334444444  7999999766      999999999999887654 455555310      


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      . .|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       102 ~-~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~  138 (194)
T 2a38_A          102 A-PPNFVQRL-QSMTVRQGSQVRLQVRVTGIPTPVVKFY  138 (194)
T ss_dssp             E-EEEEEECC-CCEEECTTEEEEEEEEEEEESCCEEEEE
T ss_pred             C-CCEEEeCC-ccEEEcCCCEEEEEEEEEEecCCeEEEE
Confidence            1 15555554 6778889999999999999999999997

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.66  E-value=2.6e-15  Score=90.14  Aligned_cols=96  Identities=21%  Similarity=0.442  Sum_probs=72.1

Q ss_pred             cEEEEEccCCeeeeccc-cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~   78 (116)
                      |.+.| +++|..+.... +......+..|.|.++..+      |+|.|+|.+.|..|....  ..+.|..+         
T Consensus        37 ~~i~W-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------  100 (192)
T 2iep_A           37 PEISW-TRNKILIKLFDTRYSIRENGQLLTILSVEDS------DDGIYCCTANNGVGGAVESCGALQVKMK---------  100 (192)
T ss_dssp             CEEEE-EETTEECCTTCTTEEEEGGGTEEEESSCCGG------GCEEEEEEEECSSSCCEEEEEEEEEEEE---------
T ss_pred             CeEEE-EECCEEccccCccEEEcCCccEEEEcCCCcc------cCeEEEEEEEcCCCceeEeEEEEEEEeC---------
Confidence            68999 88988876422 2222223447999999766      999999999999887543  44555443         


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       101 -p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~  135 (192)
T 2iep_A          101 -PKITRPP-INVKIIEGLKAVLPCTTMGNPKPSVSWI  135 (192)
T ss_dssp             -EEEEECC-CCEEEETTSCEEECCEEEEESCCEEEEE
T ss_pred             -CccccCC-cceEEeCCCcEEEEEEEeccCCceEEEE
Confidence             5555554 6778889999999999999999999997

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.65  E-value=1.8e-15  Score=99.88  Aligned_cols=96  Identities=30%  Similarity=0.491  Sum_probs=75.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      .|.++| +++|..+.... .+....++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+          
T Consensus       251 ~~~v~W-~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~----------  312 (404)
T 3p3y_A          251 TPDIAW-YKKGGDLPSDK-AKFENFNKALRITNVSEE------DSGEYFCLASNKMGSIRHTISVRVKAA----------  312 (404)
T ss_dssp             CCEEEE-EETTBCCCTTT-EEEEGGGTEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEEEEEE----------
T ss_pred             CCcEEE-EECCEECCCCc-ccccccCceEEEccCCHh------HCEEEEEEEEeCCCcEEEEEEEEEeCC----------
Confidence            378999 88988875322 233444668999999766      999999999999987653 55655553          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       313 p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~v~W~  347 (404)
T 3p3y_A          313 PYWLDEP-KNLILAPGEDGRLVCRANGNPKPTVQWM  347 (404)
T ss_dssp             EEEEECC-CCEEECTTCCEEEECEEEEESCCEEEEE
T ss_pred             CeeeccC-CcceeecCCcEEEEEEccccCCCceEEE
Confidence            6666655 6788889999999999999999999997

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.65  E-value=6.7e-15  Score=90.02  Aligned_cols=104  Identities=21%  Similarity=0.368  Sum_probs=72.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEee---CCeEEecCCC-CCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS---NGSLMFPPFP-ETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLL   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~---~~~l~i~~v~-~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~   75 (116)
                      .|.|+| +++|..+...........   +..|.|.++. .+      |+|.|+|.+.|..|.... ..|.|.....+  .
T Consensus        35 ~~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~--~  105 (212)
T 2yd6_A           35 RPKIVW-NKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPR------DEAIYECVASNNVGEISVSTRLTVLREDQI--P  105 (212)
T ss_dssp             CCEEEE-EETTEECCCTTEEEEEEGGGTEEEEEECSCCTTT------TCEEEEEEEEETTEEEEEEEEEEEECGGGC--C
T ss_pred             CCEEEE-EECCcCCCCCceeEEEEcCCCceEEEEeccCCCC------CCeEEEEEEEcCCCcEEEEEEEEEeccCcc--C
Confidence            378999 899988864222112222   2269999993 55      999999999999887553 55555532100  0


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .. .|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       106 ~~-~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~v~W~  143 (212)
T 2yd6_A          106 RG-FPTIDMGP-QLKVVERTRTATMLCAASGNPDPEITWF  143 (212)
T ss_dssp             TT-CCEEEECC-CCEEEETTSCEEEEEEEECSSCCEEEEE
T ss_pred             CC-cceeecCC-cceeEecCCCEEEEEEecCCCCCeEEEE
Confidence            01 15565555 6678889999999999999999999997

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.64  E-value=7.1e-15  Score=88.37  Aligned_cols=97  Identities=21%  Similarity=0.329  Sum_probs=70.4

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~   78 (116)
                      |.+.| ++++..+...........++  .|.|.++..+      |+|.|+|.+.|..|.... ..+.|...         
T Consensus        37 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~~~~~~~~~l~v~~~---------  100 (197)
T 3lcy_A           37 PDIKW-YRFGKELIQSRKYKMSSDGRTHTLTVMTEEQE------DEGVYTCIATNEVGEVETSSKLLLQAT---------  100 (197)
T ss_dssp             CEEEE-EETTEEECCCSSEEEEESSSEEEEEEECCSGG------GCEEEEEEEECSSCEEEEEEEEEEEEE---------
T ss_pred             CEEEE-EECCEECCCCccEEEEeCCCEEEEEEecCCcc------CCEEEEEEEECCCCceeEEEEEEEEcC---------
Confidence            68999 88998886433333333333  7999999766      999999999999887653 55555542         


Q ss_pred             CCceEec--CCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         79 GPLFRIE--PPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~--~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       |.+...  .+....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       101 -p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~  138 (197)
T 3lcy_A          101 -PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWF  138 (197)
T ss_dssp             -EEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred             -CCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEe
Confidence             222211  125567788999999999999999999997

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.64  E-value=7e-15  Score=90.38  Aligned_cols=101  Identities=17%  Similarity=0.327  Sum_probs=73.2

Q ss_pred             cEEEEEccCCeeeeccccc---eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      |.|+| +++|..+......   .....+..|.|.++..+      |+|.|+|.+.|..|.... ..+.|....     ..
T Consensus        49 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~~~~~~~~~l~V~~~~-----~~  116 (231)
T 3ojm_B           49 PTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSINHTYHLDVVERS-----RH  116 (231)
T ss_dssp             CEEEE-EETTEECCGGGSTTCCEEEGGGTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECCC-----CC
T ss_pred             CeEEE-EECCccccccccccceeeecCcceEEEecCCcc------cCEEEEEEEecccCcccccEEEEEEcCC-----CC
Confidence            68999 8899988643222   22333458999999766      999999999999887653 555554320     01


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       .|.+....+....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus       117 -~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~  153 (231)
T 3ojm_B          117 -RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI  153 (231)
T ss_dssp             -CCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEE
T ss_pred             -CCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEE
Confidence             1344333346778889999999999999999999997

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.64  E-value=2.8e-15  Score=98.99  Aligned_cols=97  Identities=21%  Similarity=0.401  Sum_probs=75.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      .|.++| +++|..+...........++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+          
T Consensus       250 ~~~~~W-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~----------  312 (403)
T 3laf_A          250 PPSFTW-LRGEEVIQLRSKKYSLLGGSNLLISNVTDD------DSGTYTCVVTYKNENISASAELTVLVP----------  312 (403)
T ss_dssp             CCEEEE-EETTEECCCSSSSEEEETTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEEE----------
T ss_pred             CCeEEE-EECCeeccCCCceEEECCccEEEEeCCCHH------HCEEEEEEEEcCCCceEEEEEEEEECC----------
Confidence            378999 889888764333233445668999999766      999999999999887653 55655553          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       313 p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~v~W~  347 (403)
T 3laf_A          313 PWFLNHP-SNLYAYESMDIEFECAVSGKPVPTVNWM  347 (403)
T ss_dssp             EEEEECC-CCEECCTTCCEEECCEEEEESCCEEEEE
T ss_pred             CcEeecC-cceEEecCCeEEEEEEEeeccCCEEEEE
Confidence            6665555 6677889999999999999999999997

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.64  E-value=7.4e-15  Score=88.13  Aligned_cols=96  Identities=17%  Similarity=0.332  Sum_probs=69.8

Q ss_pred             cEEEEEcc-CCeeeecc-ccceEEe---eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE--EEEEeCcEeee
Q psy11568          2 YVLLWLIR-DNTVIAYV-KDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF--VHVKAGSVVSL   74 (116)
Q Consensus         2 p~v~W~~~-~g~~~~~~-~~~~~~~---~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~--~~v~~~~~~~~   74 (116)
                      |.++| ++ +|..+... .+.....   ..+.|.|.++..+      |+|.|+|.+.|..+...+..  |.|..+     
T Consensus        33 ~~v~W-~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----  100 (191)
T 1epf_A           33 KDISW-FSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSEATVNVKIFQK-----  100 (191)
T ss_dssp             CEEEE-ECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTTEEEEEEEEEEEECC-----
T ss_pred             ceEEE-EeCCCccccCCCCeEEEEECCCCceEEEEccCCcc------cCEEEEEEEEcCCCcceEEEEEEEeecC-----
Confidence            78999 65 88887632 2222211   1247999999766      99999999999985444333  333332     


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                           |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       101 -----p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~  135 (191)
T 1epf_A          101 -----LMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWK  135 (191)
T ss_dssp             -----SEEEECC-SSEECCTTSCEEECCEEECSSCCEEEEE
T ss_pred             -----ceEecCC-CcEeecCCCeEEEEEEECCCCCCEEEEE
Confidence                 6665555 6778889999999999999999999996

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.63  E-value=5.7e-15  Score=89.02  Aligned_cols=101  Identities=21%  Similarity=0.313  Sum_probs=71.0

Q ss_pred             cEEEEEccCCeeeeccc-cceEEe-eCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568          2 YVLLWLIRDNTVIAYVK-DLRIAL-SNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~-~~~~~~-~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~   76 (116)
                      |.++| +++|.++.... ..+... .++  .|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+..+   .
T Consensus        34 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~---~  103 (197)
T 2j8h_A           34 PIVKW-YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD------DATVYQVRATNQGGSVSGTASLEVEVPAKI---H  103 (197)
T ss_dssp             CEEEE-EETTEECCCCSSSEEEEEETTTEEEEEECSCCGG------GCSEEEEEEEETTEEEEEEEEEEEEEEEEE---C
T ss_pred             CEEEE-EECCEECccCCCcEEEEEcCCCEEEEEECcCCHH------hCEEEEEEEEECCCceeEEEEEEEcCCCcC---C
Confidence            68999 88998876422 222222 344  7999999766      999999999999887653 55555542110   0


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                        .|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       104 --~~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~i~W~  139 (197)
T 2j8h_A          104 --LPKTLEGM-GAVHALRGEVVSIKIPFSGKPDPVITWQ  139 (197)
T ss_dssp             --CSSCBTTB-EEEEEETTCCCEEEEEEEEESCCEEEEE
T ss_pred             --CCcccccc-CeEEEeCCCEEEEEEEEEecCCCcEEEE
Confidence              12222222 5567888999999999999999999997

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.63  E-value=1.6e-14  Score=88.21  Aligned_cols=103  Identities=20%  Similarity=0.359  Sum_probs=72.7

Q ss_pred             cEEEEEccCCeeeec-cccceEEe-eCC--eEEecCCCC-CCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeee
Q psy11568          2 YVLLWLIRDNTVIAY-VKDLRIAL-SNG--SLMFPPFPE-TGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSL   74 (116)
Q Consensus         2 p~v~W~~~~g~~~~~-~~~~~~~~-~~~--~l~i~~v~~-~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~   74 (116)
                      |.|+| +++|..+.. ..+..... .++  .|.|.++.. +      |+|.|+|.+.|..|...+  ..|.|.....   
T Consensus        36 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~------d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~---  105 (212)
T 2yd1_A           36 PSIVW-RKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGR------DDAPYECVAENGVGDAVSADATLTIYEGDK---  105 (212)
T ss_dssp             CEEEE-EETTEECCTTSTTEEEEEETTTEEEEEESSCCTTT------TCSEEEEEEECSSSCEEEEEEEEEEECTTC---
T ss_pred             CeEEE-EECCEECCCCcceeEEEEcCCCeEEEEEEecCCCC------cCceEEEEEEeCCCCeEEeeEEEEEecccC---
Confidence            68999 889988863 22222222 233  799999976 5      999999999999987433  4555553210   


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .....|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       106 ~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~g~p~p~i~W~  145 (212)
T 2yd1_A          106 TPAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWI  145 (212)
T ss_dssp             SCTTCCEEEECC-CCEEEETTCCEEECCEEECSSCCEEEEE
T ss_pred             CCCCCCeeEeCC-CceEeecCCeEEEEEEeccCCCCeEEEE
Confidence            000015565555 6678889999999999999999999997

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.63  E-value=1.5e-14  Score=89.62  Aligned_cols=101  Identities=18%  Similarity=0.314  Sum_probs=74.0

Q ss_pred             cEEEEEccCCeeeeccccc---eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      |.|+| +++|..+......   ........|.|.++..+      |+|.|+|.+.|..|.... ..+.|....     ..
T Consensus        45 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~~~~~~~~~~~~l~V~~~~-----~~  112 (241)
T 3grw_A           45 PSISW-LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS------DRGNYTCVVENKFGSIRQTYTLDVLERS-----PH  112 (241)
T ss_dssp             CEEEE-EETTEECCGGGSTTCCEEEGGGTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECCC-----CC
T ss_pred             ceeEE-EECCcccCCCCcccceeeeccceEEEEEeCCcc------cCEEEEEEEeecCCceEEEEEEEEeccC-----CC
Confidence            68999 8899988643221   23334558999999766      999999999999876653 455554310     01


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       .|.+....+....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       113 -~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~  149 (241)
T 3grw_A          113 -RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL  149 (241)
T ss_dssp             -CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEE
T ss_pred             -CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEE
Confidence             1445444446777889999999999999999999997

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.62  E-value=4.6e-15  Score=97.61  Aligned_cols=98  Identities=18%  Similarity=0.261  Sum_probs=72.4

Q ss_pred             CcEEEEEccCCeeeec----cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeee
Q psy11568          1 MYVLLWLIRDNTVIAY----VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLL   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~----~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~   75 (116)
                      .|.|+| ++++..+..    ....+....++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+      
T Consensus       241 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~------  307 (388)
T 2v5m_A          241 APSFRW-YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE------DSGKYLCVVNNSVGGESVETVLTVTAP------  307 (388)
T ss_dssp             CCEEEE-EEECTTSSCEEECCCSSSEEEETTEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEEEEEE------
T ss_pred             CCEEEE-EecCCCCcccccccccCceecccCEEEECcCCHH------HCeEEEEEEecCCCceeEEEEEEEeCC------
Confidence            378999 665432211    112234455779999999766      999999999999987653 55666553      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                          |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       308 ----p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~i~W~~  343 (388)
T 2v5m_A          308 ----LSAKIDP-PTQTVDFGRPAVFTCQYTGNPIKTVSWMK  343 (388)
T ss_dssp             ----EEEEEES-SEEEECTTSCEEEEEEEEEECCCEEEEEE
T ss_pred             ----CccccCC-CcEEecCCCCEEEEEEeccccCCeEEEEE
Confidence                5555555 67788899999999999999999999973

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.62  E-value=1e-14  Score=95.96  Aligned_cols=97  Identities=19%  Similarity=0.314  Sum_probs=71.9

Q ss_pred             CcEEEEEccC--Ceeeecc---ccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCc
Q psy11568          1 MYVLLWLIRD--NTVIAYV---KDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGS   70 (116)
Q Consensus         1 ~p~v~W~~~~--g~~~~~~---~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~   70 (116)
                      .|.|+| +++  |..+...   ...++...    .+.|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+ 
T Consensus        29 ~p~v~W-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~~-  100 (389)
T 2jll_A           29 IPEITW-KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS------DSGRYDCEAASRIGGHQKSMYLDIEYA-  100 (389)
T ss_dssp             CCEEEE-EETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGG------GCEEEEEEEECSSCEEEEEEEEEEEEE-
T ss_pred             CCeEEE-EeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChh------hCEEEEEEEEeCCCCcceEEEEEEEeC-
Confidence            378999 777  8887541   12233322    247999999766      999999999999987653 55656543 


Q ss_pred             EeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         71 VVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        71 ~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                               |.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       101 ---------P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~i~W~  135 (389)
T 2jll_A          101 ---------PKFISNQ-TIYYSWEGNPINISCDVKSNPPASIHWR  135 (389)
T ss_dssp             ---------EEECCSC-CEEEECTTCCEEEEECEEEESCCEEEEE
T ss_pred             ---------CEEecCc-ceEEeccCCEEEEEEEEEecCCCeEEEE
Confidence                     5554433 5557788999999999999999999996

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.61  E-value=5.5e-15  Score=97.34  Aligned_cols=97  Identities=19%  Similarity=0.342  Sum_probs=73.8

Q ss_pred             cEEEEEccCCeeeeccccceEEe---eCC-eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL---SNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~---~~~-~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~   75 (116)
                      |.++| +++|..+......+...   .++ .|.|.++..+      |+|.|+|.+.|..|...+  ..|.|..+      
T Consensus       242 ~~i~W-~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~~l~V~~~------  308 (395)
T 1bih_A          242 GYPNY-FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE------DEGVYTCEVDNGVGKPQKHSLKLTVVSA------  308 (395)
T ss_dssp             CCCEE-EETTEECCCCTTSSEESCSSSTTSEEEESSCCGG------GCEEEEEEECCSSSSCEEEEEEEEEEEE------
T ss_pred             CeEEE-EECCEEcCCCCceeEEEEecCCCceEEEccCChh------hCEEEEEEEEeCCCCceEEEEEEEEEcC------
Confidence            67899 89998886533333322   122 7999999766      999999999999988654  44555543      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                          |.+...+.....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       309 ----P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~  344 (395)
T 1bih_A          309 ----PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS  344 (395)
T ss_dssp             ----EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEE
T ss_pred             ----CccccCCCcceEecCCCeEEEEEEECcccCCeeEEE
Confidence                667666633378889999999999999999999997

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.61  E-value=6.2e-15  Score=94.67  Aligned_cols=102  Identities=19%  Similarity=0.241  Sum_probs=72.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEE-cCCCceEE--EEEEE--EeCcEeeeec
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVILS--RFVHV--KAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~-n~~g~~~~--~~~~v--~~~~~~~~~~   76 (116)
                      |.++| +++|.++... ..+....++.|.|.++..+      |+|.|+|.+. |..|...+  ..+.+  ...    ...
T Consensus       139 ~~i~W-~k~~~~l~~~-~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~----~~~  206 (315)
T 1itb_B          139 PKLQW-YKDCKPLLLD-NIHFSGVKDRLIVMNVAEK------HRGNYTCHASYTYLGKQYPITRVIEFITLEE----NKP  206 (315)
T ss_dssp             CCCEE-EETTEECCCC-SSSEEEETTEEEESSCCGG------GCEEEEEEEEEEETTEEEEEEEEEEEEEECC----CCC
T ss_pred             CEEEE-EECCEECCCc-cceEeecCceEEEEeceeh------hCcEEEEEEEcCCCCcEEEEEEEEEEEEecC----CCC
Confidence            68999 9999988642 2345566779999999766      9999999999 78887643  22222  110    001


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      . .|.+...+.....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       207 ~-~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~  245 (315)
T 1itb_B          207 T-RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW  245 (315)
T ss_dssp             C-CCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEE
T ss_pred             C-CCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEE
Confidence            1 25665444233577889999999999999999999973

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.60  E-value=7.4e-15  Score=102.36  Aligned_cols=99  Identities=19%  Similarity=0.322  Sum_probs=74.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~   78 (116)
                      .|.+.| +++|.++....+......++.|.|.++..+      |+|.|+|.|.|..|...+  ..|.|...         
T Consensus       495 ~~~i~W-~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s~~~~l~V~~~---------  558 (642)
T 1e07_A          495 NTTYLW-WVNGQSLPVSPRLQLSNGNRTLTLFNVTRN------DARAYVCGIQNSVSANRSDPVTLDVLYG---------  558 (642)
T ss_pred             CcEEEE-EECCEeCCCCCcEEEcCCCcEEEEeecChh------cCceEEEEeEcCCCCccCCCEEEEEEeC---------
Confidence            378999 899998865333222233568999999766      999999999999987654  55666543         


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .+.+...+ ....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       559 p~~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~v~W~~  595 (642)
T 1e07_A          559 PDTPIISP-PDSSYLSGANLNLSCHSASNPSPQYSWRI  595 (642)
T ss_pred             CCcceecC-CceeEEcCCcEEEEEEeccCCCCeEEEEE
Confidence            13344444 66788899999999999999999999973

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.59  E-value=4.2e-15  Score=95.08  Aligned_cols=107  Identities=14%  Similarity=0.220  Sum_probs=73.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeee---
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLL---   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~---   75 (116)
                      .|.|+| +++|.++....+......+  ..|.|.++..+      |+|.|+|.+.|..|...+..+.+.....+...   
T Consensus        31 ~~~v~W-~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~  103 (312)
T 2y23_A           31 KSEFSW-SKDYVSTEDSPRLEVESKGNKTKMTFKDLGMD------DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE  103 (312)
T ss_dssp             TCCEEE-EETTEECTTCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHH
T ss_pred             CcEEEE-EECCEECCCCCCEEEEEeCCEEEEEECcCCcc------CCEEEEEEEEeCCCcEEEEEEEEeeeeeeeccccc
Confidence            378999 9999988754443333333  37999999766      99999999999988665544433210000000   


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      ..+ |.+...+.....+.+|+.+.|.|.+. +.|.|.++|+
T Consensus       104 ~~~-p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~  143 (312)
T 2y23_A          104 HKF-PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYI  143 (312)
T ss_dssp             HHS-CBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEE
T ss_pred             CCC-CccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEE
Confidence            001 44444432377888999999999999 8999999997

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.59  E-value=1.2e-14  Score=93.00  Aligned_cols=100  Identities=30%  Similarity=0.511  Sum_probs=73.9

Q ss_pred             CcEEEEEccCCeeeeccc-cceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~   76 (116)
                      .|.|+| +++|.++.... ..+. ...++.|.|.++..+      |+|.|+|.+.|..|...+  ..+.|...      .
T Consensus       137 ~~~v~W-~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~~l~v~~~------~  203 (304)
T 2yd9_A          137 DPEITW-FKDFLPVDPSASNGRIKQLRSGALQIESSEET------DQGKYECVATNSAGVRYSSPANLYVRVQ------N  203 (304)
T ss_dssp             CCEEEE-EETTEECCGGGGTTSEEECTTSCEEECSCCGG------GCEEEEEEEEETTEEEECCCEEEEEECC------C
T ss_pred             CCeEEE-EECCEECcCCCCcceEEeCCCeEEEEccCCcc------cCEEEEEEEEeCCCCEEeccEEEEEEee------c
Confidence            378999 89998886422 2233 345668999999766      999999999999887653  34444421      0


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+ |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       204 ~~-P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~  240 (304)
T 2yd9_A          204 VA-PRFSILP-MSHEIMPGGNVNITCVAVGSPMPYVKWM  240 (304)
T ss_dssp             EE-EEEEECC-CCBCCCTTCCEEEEEEEEEESCCEEEEE
T ss_pred             cC-CcEEecC-CceEEcCCCeEEEEEEEeeeCCCEEEEE
Confidence            11 5665555 5567788999999999999999999997

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.59  E-value=3.8e-14  Score=89.91  Aligned_cols=97  Identities=16%  Similarity=0.323  Sum_probs=70.3

Q ss_pred             cEEEEEccCCeeeeccc-cceEEe---eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE--EEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVK-DLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF--VHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~-~~~~~~---~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~--~~v~~~~~~~~~   75 (116)
                      |.++|++.+|..+.... +.....   ....|.|.++..+      |+|.|+|.+.|..|...+..  |.|..+      
T Consensus        33 ~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~~~n~~g~~~~~~~~l~v~~~------  100 (291)
T 1qz1_A           33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSEATVNVKIFQK------  100 (291)
T ss_dssp             CEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGG------GCEEEEEEEECTTSCEEEEEEEEEEECC------
T ss_pred             cEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCC------CCEEEEEEEEcCCCCeeEEEEEEEeecc------
Confidence            78999444888776322 222221   1237999999766      99999999999987654433  333332      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                          |.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       101 ----~~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~v~W~  135 (291)
T 1qz1_A          101 ----LMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWK  135 (291)
T ss_dssp             ----SEEEECC-SSEEEETTSCEEECCEEECSSCCEEEEE
T ss_pred             ----ccccCCC-CcccccCCCeEEEEEEeccCCCCEEEEE
Confidence                5665555 6778899999999999999999999997

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.59  E-value=2.2e-14  Score=85.77  Aligned_cols=97  Identities=26%  Similarity=0.485  Sum_probs=64.2

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EE--EEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SR--FVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~--~~~v~~~~~~~~~~~   77 (116)
                      |.+.| ++++..+......+.. ..++.|.|.++..+      |+|.|+|.+.+..+... ..  .+.+..+        
T Consensus        32 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~--------   96 (189)
T 2v5t_A           32 PAVSW-LYHNEEVTTISDNRFAMLANNNLQILNINKS------DEGIYRCEGRVEARGEIDFRDIIVIVNVP--------   96 (189)
T ss_dssp             CEEEE-EC-----CBCCCTTEEECTTSCEEETTCCGG------GCEEEEEEEEETTTTEEEEEEEEEEEEEE--------
T ss_pred             CEEEE-EECCccceeccCCeEEEecCCCEEEeeCCHh------HCcEEEEEEEEcCCCceEEEEEEEEecCC--------
Confidence            68999 8888877643333333 34568999999766      99999999999875433 22  3333332        


Q ss_pred             CCCceEecCC-CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPP-YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~-~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                        |.+...+. ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus        97 --p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~  133 (189)
T 2v5t_A           97 --PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF  133 (189)
T ss_dssp             --EEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEE
T ss_pred             --CCcccccccccccccCCCcEEEEEEEccCCCCeEEEE
Confidence              33333321 2445667999999999999999999997

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.58  E-value=3.8e-14  Score=90.71  Aligned_cols=103  Identities=20%  Similarity=0.366  Sum_probs=67.1

Q ss_pred             CcEEEEEccCCeeeeccccceE-EeeC---CeEEecCCCC-CCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI-ALSN---GSLMFPPFPE-TGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSL   74 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~-~~~~---~~l~i~~v~~-~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~   74 (116)
                      .|.|+| +++|..+... +... ...+   ..|.|.++.. +      |+|.|+|.+.|..|... ...|.|......  
T Consensus        35 ~~~i~W-~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~--  104 (304)
T 2yd9_A           35 KPRVTW-NKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPR------DENVYECVAQNSVGEITVHAKLTVLREDQL--  104 (304)
T ss_dssp             CCEEEE-C-------CT-TEEEEEETTTTEEEEEECSCCTTT------TCSEEEEEEECSSCEECCEEEEEEECGGGC--
T ss_pred             CCeEEE-EECCEECCCC-ceEEEEecCCCceEEEEecccccC------CCeEEEEEEECCCCeEEEEEEEEEeccccC--
Confidence            378999 9999887532 2222 2233   3699999965 5      99999999999988754 355666542100  


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       ....|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       105 -p~~~p~i~~~~-~~~~v~~g~~v~l~C~~~g~p~~~v~W~  143 (304)
T 2yd9_A          105 -PSGFPNIDMGP-QLKVVERTRTATMLCAASGNPDPEITWF  143 (304)
T ss_dssp             -CTTCCEEEECC-CCEEEETTSCEEECCEEECSSCCEEEEE
T ss_pred             -CCCCCeeecCC-ccEEEeCCCeEEEEEECccCCCCeEEEE
Confidence             00015555555 6778889999999999999999999997

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.58  E-value=5.8e-15  Score=99.15  Aligned_cols=96  Identities=13%  Similarity=0.205  Sum_probs=66.9

Q ss_pred             cEEEEEccCCeeeeccccc--------eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTVIAYVKDL--------RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~--------~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~   73 (116)
                      |.|+| +++|..+......        +.....+.|.|.++..+      |+|.|+|.|.|.  ...+..|.|...    
T Consensus       258 p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~--~~~~~~L~V~~~----  324 (423)
T 3qs7_E          258 FGLTW-ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN------DTGYYTCSSSKH--PSQSALVTIVEK----  324 (423)
T ss_dssp             CCEEE-EESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTT------TCEEEEEEETTE--EEEEEEEEEESS----
T ss_pred             cEEEE-EECCEEccccceeecccccCCceeEEEEEEEEeecCHH------HCEEEEEEEecC--CCceEEEEEEeC----
Confidence            78999 8888877532111        11222347999999766      999999999998  222345555543    


Q ss_pred             eeccCCCceEecC-CCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         74 LLDIQGPLFRIEP-PYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        74 ~~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                            |.+...+ .....+.+|+++.|.|.+.|.|.|.++|+.
T Consensus       325 ------p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k  362 (423)
T 3qs7_E          325 ------GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF  362 (423)
T ss_dssp             ------CEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred             ------CcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE
Confidence                  4444433 245667789999999999999999999973

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.58  E-value=9e-14  Score=90.12  Aligned_cols=99  Identities=13%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC--CCceE-E----EEEEEEeCcEeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE--AGVIL-S----RFVHVKAGSVVSL   74 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~--~g~~~-~----~~~~v~~~~~~~~   74 (116)
                      |.|+| +++|..+.. .+.++...++.|.|.++..+      |+|.|+|.|.|.  .|... .    ..|.|....    
T Consensus       159 ~~i~W-~k~~~~l~~-~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~----  226 (329)
T 3oq3_B          159 NNITW-YKNNQELII-DGTKYSQSGQNLIIHNPELE------DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ----  226 (329)
T ss_dssp             CEEEE-EETTEECCC-SSSSEEEETTEEEECSCCGG------GCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC----
T ss_pred             ceEEE-EECCccCCC-CCceEecCCCEEEEeecChh------hCEEEEEEEEecccCCCceeEEEeeEEEEEECCC----
Confidence            78999 899988853 23344445789999999766      999999999997  54432 2    334444320    


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcC---Cc-eeEEeC
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSP---TP-KIEWLI  116 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P---~p-~i~W~~  116 (116)
                        . .......+ ....+..|+.+.|.|.+.|.|   .| .+.|+.
T Consensus       227 --~-~~~~~~~~-~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~  268 (329)
T 3oq3_B          227 --D-HRFKLILD-PKINVTIGEPANITCTAVSTSLLVDDVLIDWEN  268 (329)
T ss_dssp             --C-CCEEEECC-SEEEECTTSCEEEEEEEEETTCCTTCCEEEEEC
T ss_pred             --C-CCCceecC-CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEE
Confidence              0 01122243 678889999999999999998   77 889974

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.58  E-value=2.1e-14  Score=87.14  Aligned_cols=96  Identities=19%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             cEEEEEccCCeeee----------ccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE---EEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIA----------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL---SRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~----------~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~---~~~~~v~~   68 (116)
                      |.|.| ++++..+.          .....+....++.|.|.++..+      |+|.|+|.+.|..|...   ...|.|..
T Consensus        31 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~------D~G~Y~C~~~~~~g~~~~~~~~~l~V~~  103 (212)
T 1f97_A           31 PRVEW-KFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK------DNGEYTCMVSEEGGQNYGEVSIHLTVLV  103 (212)
T ss_dssp             EEEEE-EEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGG------GCEEEEEEEEETTSSSEEEEEEEEEEEB
T ss_pred             cEEEE-EECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcc------cCeEEEEEEEccCCCcccEEEEEEEEEc
Confidence            68999 66655431          1112345566689999999766      99999999999877322   24454544


Q ss_pred             CcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee-ecCcCCceeEEe
Q psy11568         69 GSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA-AQGSPTPKIEWL  115 (116)
Q Consensus        69 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~g~P~p~i~W~  115 (116)
                      +          |.+...+ ....+..|+.+.|.|. +.+.|.|.++|+
T Consensus       104 ~----------p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~i~W~  140 (212)
T 1f97_A          104 P----------PSKPTIS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWF  140 (212)
T ss_dssp             C----------CCCCEEE-CCSEEETTSCEEEEEECSCCBSCCEEEEE
T ss_pred             C----------CCCcccC-CccccCCCCeEEEEEEcccCcCCCEEEEE
Confidence            3          3332222 2346788999999999 799999999997

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.57  E-value=1e-13  Score=85.19  Aligned_cols=99  Identities=22%  Similarity=0.314  Sum_probs=70.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEee-----e
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVS-----L   74 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~-----~   74 (116)
                      |.++| +++|..+...       .++.|.|.++..+      |+|.|+|.+.|..|...+  ..+.|.......     .
T Consensus        48 ~~v~W-~~~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~  113 (218)
T 3k0w_A           48 VQYQW-FKMNKEIPNG-------NTSELIFNAVHVK------DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDG  113 (218)
T ss_dssp             SEEEE-EETTEECTTC-------CSSEEEETTCCGG------GCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCS
T ss_pred             CEEEE-EECCEECCCC-------CCCEEEEccCChh------hCeEeEEEEEcCCCCceeeEEEEEEEccCccccccccc
Confidence            68999 8888877531       2458999999766      999999999999876543  445554321000     0


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .....|.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       114 ~~~~~p~~~~~~-~~~~v~~G~~v~L~C~~~g~p~~~v~W~  153 (218)
T 3k0w_A          114 VSESKLQICVEP-TSQKLMPGSTLVLQCVAVGSPIPHYQWF  153 (218)
T ss_dssp             BCCSSCEEEECC-CCEEECTTCCEEEECEEEBSSCCEEEEE
T ss_pred             ccCCCceEEECC-CceeecCCCcEEEEEEecccCCCeEEEE
Confidence            000114555555 6778899999999999999999999997

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.57  E-value=8.4e-14  Score=83.31  Aligned_cols=92  Identities=18%  Similarity=0.275  Sum_probs=62.7

Q ss_pred             cEEEEEccCCeeeec--------cccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce-EE--EEEEEEeC
Q psy11568          2 YVLLWLIRDNTVIAY--------VKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS--RFVHVKAG   69 (116)
Q Consensus         2 p~v~W~~~~g~~~~~--------~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~~--~~~~v~~~   69 (116)
                      |.|.| ++++..+..        ....|+. ..++.|.|.++..+      |+|.|+|.+.|..|.. ..  ..|.|..+
T Consensus        28 ~~i~W-~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~------D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~  100 (176)
T 1hng_A           28 DEVRW-ERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD------DSGTYNVTVYSTNGTRILNKALDLRILEM  100 (176)
T ss_dssp             EEEEE-EETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGG------GCEEEEEEEEETTCCEEEEEEEEEEEECC
T ss_pred             ccEEE-EeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccc------cCEEEEEEEEeCCCCEEEEEEEEEEEeCC
Confidence            57999 888876531        0122333 35668999999766      9999999999999876 22  33444332


Q ss_pred             cEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         70 SVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        70 ~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                             ...|.+.         ..+.++.|.|.+.|.|.|.++|+.
T Consensus       101 -------~~~p~i~---------~~~~~v~L~C~~~g~p~p~i~W~~  131 (176)
T 1hng_A          101 -------VSKPMIY---------WECSNATLTCEVLEGTDVELKLYQ  131 (176)
T ss_dssp             -------CCCCEEE---------EETTTTEEEEECSSCSSCEEEEEE
T ss_pred             -------CCCCEEE---------ecCCcEEEEEEecCCCCcEEEEEE
Confidence                   0012222         224569999999999999999973

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.57  E-value=2.3e-14  Score=94.16  Aligned_cols=92  Identities=22%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGP   80 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p   80 (116)
                      |.+.| ++++..+..    +....++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+          |
T Consensus       237 ~~i~W-~~~~~~~~~----~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~----------p  295 (382)
T 1cs6_A          237 PQIKW-RKLDGSQTS----KWLSSEPLLHIQNVDFE------DEGTYECEAENIKGRDTYQGRIIIHAQ----------P  295 (382)
T ss_dssp             CEEEE-EECCSCCSC----CCSBSSSEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEEE----------E
T ss_pred             CEEEE-EECCccccc----EEecCCcEEEEccCChh------hCEEEEEEEEcCCCeEEEEEEEEEecC----------C
Confidence            68999 666655432    12234558999999766      999999999999987653 55555543          6


Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       296 ~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W~  329 (382)
T 1cs6_A          296 DWLDVI-TDTEADIGSDLRWSCVASGKPRPAVRWL  329 (382)
T ss_dssp             EEEECC-CCEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             CcccCC-CccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence            666555 6678889999999999999999999997

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=87.29  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             cEEEEEccCCeeeeccccc-eEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE----EEEEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS----RFVHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~----~~~~v~~~~~~~~~   75 (116)
                      |.++| ++++.++...... +.. ..++.|.|.++..+      |+|.|+|.+.|..+....    ..+.+....  ...
T Consensus        40 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~--~~~  110 (201)
T 3s97_C           40 LSYRW-LLNEFPVFITMDKRRFVSQTNGNLYIANVEAS------DKGNYSCFVSSPSITKSVFSKFIPLIPIPER--TTK  110 (201)
T ss_dssp             CEEEE-EESSTTCBCCCSSSEEECTTTCCEEESSCCGG------GCEEEEEEEEEGGGTEEEECCCEEEEEECCS--SCC
T ss_pred             eEEEE-EECCceeeeeeCCCeEEEcCCCeEEECcCCcc------cCeEEEEEEEecCCCcchhhcccceeecccc--ccC
Confidence            78999 7887776422222 222 34568999999766      999999999997755543    222222110  000


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+ |.+...+ ....+..|+++.|.|.+.|.|.|.++|+
T Consensus       111 ~~~-p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W~  148 (201)
T 3s97_C          111 PYP-ADIVVQF-KDVYALMGQNVTLECFALGNPVPDIRWR  148 (201)
T ss_dssp             CEE-EEEEEEC-CCEEEETTCCEEEEEEEEEESCCEEEEE
T ss_pred             CCC-CceEecC-CceEEecCCcEEEEEEccCCCCCceEEE
Confidence            111 5555555 4778889999999999999999999997

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.56  E-value=7.3e-14  Score=92.30  Aligned_cols=103  Identities=18%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE----EEEEEEeCcEeeeec
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS----RFVHVKAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~----~~~~v~~~~~~~~~~   76 (116)
                      |.++| ++++.++....+ +.. ..++.|.|.++..+      |+|.|+|.|.|..+....    ..+.+......  ..
T Consensus       133 ~~~~W-~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~--~~  202 (384)
T 3kld_A          133 LSYAW-IFNEYPSYQDNR-RFVSQETGNLYIAKVEKS------DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVM--GE  202 (384)
T ss_dssp             EEEEE-EETTEECCCSSS-EEECTTTCCEEESSCCGG------GCEEEEEEEEETTTTEEEECCCEEEEEEEEEEC--CC
T ss_pred             eEEEE-EECCCCCEeecc-EEEEcCCCcEEEeecCHH------HCceEEEEEecccccceeeCCceEEEEccCCcc--cc
Confidence            57899 888887753222 222 34568999999766      999999999999876532    12222210000  00


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      . .|.+....+....+.+|+++.|.|.+.|.|.|.++|+
T Consensus       203 ~-~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~  240 (384)
T 3kld_A          203 Y-EPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR  240 (384)
T ss_dssp             E-EEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred             c-CCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEE
Confidence            1 1444444446778889999999999999999999996

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.56  E-value=8e-14  Score=89.30  Aligned_cols=107  Identities=13%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeC--cE-----
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAG--SV-----   71 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~--~~-----   71 (116)
                      |.++| +++|..+...........++  .|.|.++..+      |+|.|+|.+.|..|.... ..+.+...  ..     
T Consensus       138 ~~i~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~  210 (317)
T 2y25_A          138 LKVNW-SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN------DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR  210 (317)
T ss_dssp             CEEEE-EESSSBCCCCSSEEEEECSSEEEEEEESCCGG------GCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHH
T ss_pred             cEEEE-EECCEECCCCCCeEEeccCCEEEEEECcCCcc------cCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcc
Confidence            78999 88988876433333333333  4999999766      999999999998876653 33322110  00     


Q ss_pred             e---eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         72 V---SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        72 ~---~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +   .......|.+...++....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus       211 ~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~  257 (317)
T 2y25_A          211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL  257 (317)
T ss_dssp             HHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEE
T ss_pred             cCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEE
Confidence            0   0001112556665557788999999999999999999999997

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.56  E-value=3.2e-14  Score=87.00  Aligned_cols=97  Identities=23%  Similarity=0.480  Sum_probs=69.4

Q ss_pred             cEEEEEccCCeeeeccc--cceEEeeCCeE----EecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTVIAYVK--DLRIALSNGSL----MFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~--~~~~~~~~~~l----~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~   73 (116)
                      |.|+| +++|..+....  ..+....++.+    .|.++..+      |+|.|+|.+.|..|...+  ..+.|...    
T Consensus        39 ~~v~W-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~------d~G~Y~C~~~n~~g~~~~~~~~l~v~~~----  107 (217)
T 2vr9_A           39 PTIEW-FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ------DGGEYWCVAKNRVGQAVSRHASLQIAVL----  107 (217)
T ss_dssp             CEEEE-EETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCB------CCEEEEEEEEETTEEEECCCEEEEECEE----
T ss_pred             CeEEE-EECCcCccCCCccceeEEecCCceEEEEEeccCCcc------cCceEEEEEecCCCccccccceEEEEEe----
Confidence            68999 88998886432  22344455544    46667554      999999999999886643  34444331    


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                           .|.+...+ ....+..|+.+.|.|.+ .|.|.|.++|+
T Consensus       108 -----~~~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~~v~W~  144 (217)
T 2vr9_A          108 -----RDDFRVEP-KDTRVAKGETALLECGPPKGIPEPTLIWI  144 (217)
T ss_dssp             -----CCSCSBCC-CCEEECTTSCEEECCBCCCEESCCEEEEE
T ss_pred             -----CCCcEECC-CccEEcCCCeEEEEEECCCCCCCCeEEEE
Confidence                 14444444 56778899999999999 89999999997

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.56  E-value=4.2e-14  Score=98.58  Aligned_cols=97  Identities=25%  Similarity=0.387  Sum_probs=72.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~   79 (116)
                      |.++| +++|+++....+......++.|.|.++..+      |+|.|+|.|.|..|...+  ..|.|...          
T Consensus       318 ~~v~W-~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~s~~~~l~V~~~----------  380 (642)
T 1e07_A          318 TTYLW-WVNNQSLPVSPRLQLSNDNRTLTLLSVTRN------DVGPYECGIQNELSVDHSDPVILNVLYG----------  380 (642)
T ss_pred             ccEEE-EECCccCCCcCCEEEeCCCCEEEEeccCcc------cCeeEEEEEeCCCCCcceeeEEEEEEcC----------
Confidence            67999 899988764333333334568999999766      999999999999987654  44545432          


Q ss_pred             Cce-EecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLF-RIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~-~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.. ...+ ....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       381 p~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~i~W~~  417 (642)
T 1e07_A          381 PDDPTISP-SYTYYRPGVNLSLSCHAASNPPAQYSWLI  417 (642)
T ss_pred             CCCCeecC-CceEecCCCcEEEEEEcCccCCCeEEEEE
Confidence            322 2333 55677889999999999999999999973

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.56  E-value=1.1e-13  Score=87.88  Aligned_cols=98  Identities=18%  Similarity=0.332  Sum_probs=70.1

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE--EEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF--VHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~--~~v~~~~~~~~~~~   77 (116)
                      +.+.|++.+|..+....+......+  ..|.|.++..+      |+|.|+|.+.|..|...+..  |.|..+        
T Consensus        33 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~~~n~~g~~~~~~~~l~v~~~--------   98 (291)
T 2wim_A           33 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE------DAGIYRCQATDAKGQTQEATVVLEIYQK--------   98 (291)
T ss_dssp             SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGG------GCEEEEEEEECSSSCEEEEEEEEEEECC--------
T ss_pred             CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcc------cCEEEEEEEecccCceEEEEEEEEecCC--------
Confidence            5799943378777543333222222  27999999766      99999999999988765433  333332        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                        |.+...+ ....+..|+.+.|.|.+.+.|.|.++|+.
T Consensus        99 --~~~~~~~-~~~~v~~G~~v~l~C~~~~~p~~~v~W~~  134 (291)
T 2wim_A           99 --LTFREVV-SPQEFKQGEDAEVVCRVSSSPAPAVSWLY  134 (291)
T ss_dssp             --CBCCSCC-CSEEEETTSCEEECCCCBCSSCCEEEEEC
T ss_pred             --cceEeCC-CChhhcCCCCEEEEEEEccCCCCEEEEEE
Confidence              4444444 56778899999999999999999999974

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.55  E-value=4.8e-14  Score=100.54  Aligned_cols=96  Identities=23%  Similarity=0.445  Sum_probs=74.3

Q ss_pred             cEEEEEccCCeeeeccccceEE-ee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      +.++| +++|+++......... ..  ...|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+        
T Consensus       650 ~~i~W-~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~~~~~l~V~~~--------  714 (816)
T 3dmk_A          650 LNIDW-TLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS------HAGNFTCHARNLAGHQQFTTPLNVYVP--------  714 (816)
T ss_dssp             CEEEE-EETTBCCCGGGTCEEEEETTTEEEEEEESCCGG------GCEEEEEEEECSSCEEEEEEEECEEEE--------
T ss_pred             CEEEE-EECCeEcCCCCCeeEEEcCCCeeEEEEccCChh------hCEEEEEEEEeCCccEEEEEEEEEEeC--------
Confidence            48999 9999888643332222 21  236999999766      999999999999987763 55555553        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                        |.+...+ ....+..|+++.|.|.+.|.|.|.++|+
T Consensus       715 --P~~~~~~-~~~~v~~G~~v~l~C~~~g~P~p~i~W~  749 (816)
T 3dmk_A          715 --PRWILEP-TDKAFAQGSDAKVECKADGFPKPQVTWK  749 (816)
T ss_dssp             --EEEEECC-CCEEEETTCCEEEECEEEEESCCEEECC
T ss_pred             --Cceeeec-ccceecCCCcEEEEEEEecCCCCeEEEE
Confidence              6776666 6788889999999999999999999996

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.55  E-value=2e-14  Score=92.95  Aligned_cols=101  Identities=18%  Similarity=0.314  Sum_probs=72.7

Q ss_pred             cEEEEEccCCeeeeccccc---eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~---~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      |.|+| +++|..+......   ........|.|.++..+      |+|.|+|.+.|..|.... ..|.|....     ..
T Consensus       153 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----~~  220 (334)
T 1ry7_B          153 PSISW-LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS------DRGNYTCVVENKFGSIRQTYTLDVLERS-----PH  220 (334)
T ss_dssp             CEEEC-CBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGG------GCCCEEEEEEETTEEEEEEEEEEEECCC-----CS
T ss_pred             CeEEE-EECCEECcccccccceecccceEEEEECCCCcc------cCEEEEEEEEeCCCCEEEEEEEEEecCC-----CC
Confidence            78999 9999887642221   11123448999999766      999999999999987653 455554320     01


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       .|.+....+....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       221 -~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~  257 (334)
T 1ry7_B          221 -RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL  257 (334)
T ss_dssp             -SCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred             -CCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence             1444443346778889999999999999999999997

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.55  E-value=3.1e-14  Score=90.36  Aligned_cols=99  Identities=23%  Similarity=0.303  Sum_probs=70.0

Q ss_pred             CcEEEEEccCCeeeeccccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce-EE--EEEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS--RFVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~~--~~~~v~~~~~~~~~~   76 (116)
                      .|.++| +++|..+......+. ...++.|.|.++..+      |+|.|+|.+.|..+.. ..  ..+.|..+       
T Consensus       129 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~-------  194 (291)
T 1qz1_A          129 PPTIIW-KHKGRDVILKKDVRFIVLSNNYLQIRGIKKT------DEGTYRCEGRILARGEINFKDIQVIVNVP-------  194 (291)
T ss_dssp             CCEEEE-EETTSCSSTTCCTTEEECTTSCEEETTCCGG------GCEEEEEEEEEGGGTEEEEEEEEEEEEEE-------
T ss_pred             CCEEEE-EECCEEcccCCCceEEEccCCcEEEccCccc------cCeEEEEEEEecCCCceeeEEEEEEEecC-------
Confidence            378999 888887754333333 345668999999766      9999999999976433 33  33444332       


Q ss_pred             cCCCceEecC-CCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         77 IQGPLFRIEP-PYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        77 ~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                         |.+...+ +....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       195 ---p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~  232 (291)
T 1qz1_A          195 ---PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK  232 (291)
T ss_dssp             ---EEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE
T ss_pred             ---CcccccccccccccccCceEEEEEEEEEeCCCcEEEEE
Confidence               4444433 134566789999999999999999999973

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.54  E-value=6.8e-14  Score=89.36  Aligned_cols=102  Identities=21%  Similarity=0.321  Sum_probs=71.0

Q ss_pred             CcEEEEEccCCeeeeccc-cceEE-eeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeee
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLL   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~~-~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~   75 (116)
                      .|.|+| +++|..+.... ..+.. ..++  .|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+..+   
T Consensus        33 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~---  102 (305)
T 2nzi_A           33 KPIVKW-YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD------DATVYQVRATNQGGSVSGTASLEVEVPAKI---  102 (305)
T ss_dssp             CCEEEE-EETTEECCCCSSSEEEEEETTTEEEEEESSCCGG------GCSEEEEEEEETTEEEEEEEEEEECEEEEE---
T ss_pred             CCeEEE-EECCEEcccCCCeEEEEECCCCEEEEEEccCChh------hCeEEEEEEEcCCCCccceEEEEEecCCcc---
Confidence            378999 88998876422 22222 2344  7999999766      999999999999887553 44555432110   


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .  .|.....+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       103 ~--~~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~i~W~  139 (305)
T 2nzi_A          103 H--LPKTLEGM-GAVHALRGEVVSIKIPFSGKPDPVITWQ  139 (305)
T ss_dssp             C--CCHHHHSS-CCEEEETTCCEEEEEEEEEESCCEEEEE
T ss_pred             C--CCcccccc-ccEEecCCCEEEEEEEECCCCCCEEEEE
Confidence            0  12222222 5677888999999999999999999997

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.54  E-value=4.1e-14  Score=92.95  Aligned_cols=98  Identities=20%  Similarity=0.314  Sum_probs=73.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCC-CCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeecc
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPE-TGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~-~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~   77 (116)
                      .|.+.| ++||.++......++...++.|.|.++.. +      |+|.|+|.+.|..|...+  ..+.|...        
T Consensus        36 ~~~v~W-~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~------D~G~Y~C~a~n~~g~~~s~~~~l~v~~~--------  100 (382)
T 1cs6_A           36 PATYRW-KMNGTELKMGPDSRYRLVAGDLVISNPVKAK------DAGSYQCVATNARGTVVSREASLRFGFL--------  100 (382)
T ss_dssp             CCEEEE-EETTEECCCSTTSSEEEETTEEEEESCCHHH------HCEEEEEEEEETTEEEECCCEEEEEEEE--------
T ss_pred             CCEEEE-EECCEECCcCCCccEEeeCCeEEEecccccc------cCEEEEEEEEcCCcEEEecceEEEeecc--------
Confidence            378999 89999887544456667788999999864 5      999999999999886653  44444432        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                        |.+.........+.+|+.+.|.|.+ .+.|.+.+.|+
T Consensus       101 --~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~  137 (382)
T 1cs6_A          101 --QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL  137 (382)
T ss_dssp             --CCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEE
T ss_pred             --ccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEE
Confidence              2232233356788899999999995 56789999997

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.53  E-value=2.1e-13  Score=82.26  Aligned_cols=92  Identities=16%  Similarity=0.272  Sum_probs=63.3

Q ss_pred             cEEEEEcc--CCeeeec---------cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE---EEEEEE
Q psy11568          2 YVLLWLIR--DNTVIAY---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS---RFVHVK   67 (116)
Q Consensus         2 p~v~W~~~--~g~~~~~---------~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~---~~~~v~   67 (116)
                      |.|.| ++  ++..+..         ..+......+++|.|.+++++      |+|.|+|.+.|..|....   ..|.|.
T Consensus        31 ~~i~W-~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~------DsG~Y~c~~~n~~g~~~~~~~~~L~V~  103 (182)
T 1hnf_A           31 DDIKW-EKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD------DQDIYKVSIYDTKGKNVLEKIFDLKIQ  103 (182)
T ss_dssp             EEEEE-EEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGG------GCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CEEEE-EECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChh------hCEEEEEEEEeCCCceeEEEEEEEEEc
Confidence            58999 77  7777631         112223456779999999766      999999999999887542   334443


Q ss_pred             eCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         68 AGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        68 ~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .+       ...|.+..         .+..+.|.|.+.+.|.|.++|+.
T Consensus       104 ~~-------~~~P~i~~---------~~~~v~L~C~~~~~p~~~~~W~~  136 (182)
T 1hnf_A          104 ER-------VSKPKISW---------TCINTTLTCEVMNGTDPELNLYQ  136 (182)
T ss_dssp             CC-------CCCCEEEE---------ETTTTEEEEECSSCSSCEEEEEE
T ss_pred             Cc-------CCCCEEEE---------ccCcEEEEeEccCCCCCEEEEEE
Confidence            32       11133322         23479999999999999999973

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.53  E-value=4.9e-14  Score=91.69  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC-Cce--EEE--EEEEEeCcEeeee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVI--LSR--FVHVKAGSVVSLL   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~--~~~--~~~v~~~~~~~~~   75 (116)
                      .|.|+| +++|.++..  +.+....+..|.|.++..+      |+|.|+|.|.|.. |..  .+.  .|.|.....   .
T Consensus       154 ~~~v~W-~k~~~~l~~--~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~---~  221 (349)
T 4dep_C          154 KPTITW-YMGCYKIQN--FNNVIPEGMNLSFLIALIS------NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK---N  221 (349)
T ss_dssp             CCEEEE-EETTEECCS--CSSEEEETTEEEEESCCGG------GCEEEEEEEEEEETTEEEEEEEEEEEEEECCGG---G
T ss_pred             CceEEE-eeCCEECCC--ccceeecCCEEEEeeeeec------CCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCC---C
Confidence            378999 999998853  2344555668999999766      9999999999986 544  133  333332100   0


Q ss_pred             ccCCCceEecCCCe-EEEeCCCcEEEEeeec----CcCCceeEEeC
Q psy11568         76 DIQGPLFRIEPPYR-FEFSNESGGRLDCAAQ----GSPTPKIEWLI  116 (116)
Q Consensus        76 ~~~~p~~~~~~~~~-~~~~~g~~~~l~C~~~----g~P~p~i~W~~  116 (116)
                      ..+ |.+...+... ..+..|+.+.|.|.+.    |.|.|.++|+.
T Consensus       222 ~~~-p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~  266 (349)
T 4dep_C          222 AVP-PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI  266 (349)
T ss_dssp             CCS-CEEC----------------CCCEEEEECCCTTCCCEEEEES
T ss_pred             CCC-CeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEE
Confidence            001 4443333111 2677899999999999    67999999974

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.53  E-value=8.8e-14  Score=91.47  Aligned_cols=103  Identities=29%  Similarity=0.567  Sum_probs=72.6

Q ss_pred             CcEEEEEcc-CCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeecc
Q psy11568          1 MYVLLWLIR-DNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         1 ~p~v~W~~~-~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~   77 (116)
                      .|.|+| ++ ||.++....+.+....++.|.|.++..+++....|+|.|+|.|.|..|...+  ..|.+...        
T Consensus        33 ~p~v~W-~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~--------  103 (388)
T 2v5m_A           33 MPEIIW-IRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA--------  103 (388)
T ss_dssp             CCEEEE-EETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECC--------
T ss_pred             CCEEEE-EcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccc--------
Confidence            378999 65 8888865444455567789999999765110011299999999999987554  33333332        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCC---ceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPT---PKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~---p~i~W~  115 (116)
                        |.+...+ ....+.+|+.+.|.|.+.+.|.   +.++|+
T Consensus       104 --p~~~~~~-~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~  141 (388)
T 2v5m_A          104 --QYYEADV-NKEHVIRGNSAVIKCLIPSFVADFVEVVSWH  141 (388)
T ss_dssp             --CCCCCBC-CCEEEETTSCEEECCBCCTTTTTTEEEEEEE
T ss_pred             --cccccCc-cceeeecCCcEEEEEECcCCCCCCcceEEEE
Confidence              4444444 5678889999999999988753   789997

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.52  E-value=1.5e-13  Score=83.31  Aligned_cols=96  Identities=21%  Similarity=0.251  Sum_probs=61.7

Q ss_pred             cEEEEEcc-CCeeeeccccceEEe-----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeee
Q psy11568          2 YVLLWLIR-DNTVIAYVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSL   74 (116)
Q Consensus         2 p~v~W~~~-~g~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~   74 (116)
                      |.|.| ++ ++.......+.....     .+..|.|.++..+      |+|.|+|.+.|..+.... ..|.|..+.    
T Consensus        37 ~~v~W-~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~l~V~~~~----  105 (202)
T 3bp6_B           37 IRASL-QKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR------DSGQYRCLVICGAAWDYKYLTVKVKASY----  105 (202)
T ss_dssp             EEEEE-EECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEBCC----
T ss_pred             eEEEE-EcCCCcccccCCceEEeeccccCCeeEEEECCCCHH------HCcEEEEEEEeCCCcceEEEEEEecCCC----
Confidence            68999 66 544333222211111     1147999999766      999999999999876543 455555420    


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                        . .|.+..     ..+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       106 --~-~p~~~~-----~~~~~g~~v~l~C~~~g~P~p~v~W~~  139 (202)
T 3bp6_B          106 --M-RIDTRI-----LEVPGTGEVQLTCQARGYPLAEVSWQN  139 (202)
T ss_dssp             --C-CEEEEE-----EECTTTCCEEEEEEEEEBSCCEEEETT
T ss_pred             --C-cccEEE-----EecCCCCeEEEEEEccccCCceEEEEe
Confidence              0 122211     234569999999999999999999973

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.52  E-value=1e-13  Score=87.89  Aligned_cols=99  Identities=25%  Similarity=0.465  Sum_probs=65.9

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EE--EEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SR--FVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~--~~~v~~~~~~~~~~   76 (116)
                      .|.++| ++++..+......+.. ..++.|.|.++..+      |+|.|+|.+.|..+... ..  .+.+..+       
T Consensus       127 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~-------  192 (291)
T 2wim_A          127 APAVSW-LYHNEEVTTISDNRFAMLANNNLQILNINKS------DEGIYRCEGRVEARGEIDFRDIIVIVNVP-------  192 (291)
T ss_dssp             CCEEEE-ECC----CBCCCSSEEECTTSCEEETTCCGG------GCEEEEEEEEETTTTEEEEEEEEEEEEBC-------
T ss_pred             CCEEEE-EECCccccccCCceEEEccCCCEEEEecchh------hCEEEEEEEEECCCCeeEEeeEEEEeccC-------
Confidence            378999 8888877643333333 45668999999766      99999999999875433 33  3333332       


Q ss_pred             cCCCceEecCC-CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         77 IQGPLFRIEPP-YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        77 ~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                         |.+...+. ....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       193 ---p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~  230 (291)
T 2wim_A          193 ---PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR  230 (291)
T ss_dssp             ---CCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEE
T ss_pred             ---CccccCcccccceecCCCeEEEEEEeecCCCCeEEEEE
Confidence               44433321 13345679999999999999999999973

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.52  E-value=6.8e-14  Score=96.29  Aligned_cols=88  Identities=14%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      .|.|+| +++|+++.....  ....+..|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+          
T Consensus       355 ~p~i~W-~k~g~~l~~~~~--~~~~~~~L~I~~v~~~------D~G~YtC~A~N~~g~~~~~~~L~V~~~----------  415 (527)
T 3qs9_E          355 QIRCTW-TFSRKSFPCEQK--GLDNGYSISKFCNHKH------QPGEYIFHAENDDAQFTKMFTLNIRRK----------  415 (527)
T ss_dssp             CCEEEE-EETTEEEECBCC--BCSSSSEEEEECCCTT------CCSCEEEEEEETTEEEEEEEEEC--CC----------
T ss_pred             CCEEEE-EECCEECcCCcc--cccCCcEEEEecCCcc------cCEEEEEEEEeCCCcEEEEEEEEEecC----------
Confidence            478999 999999864322  2234568999999766      999999999999987764 44555443          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ .        ...|.|.+.|.|.|.++|++
T Consensus       416 P~i~~~~-~--------~~~l~C~a~g~P~p~i~W~~  443 (527)
T 3qs9_E          416 PQVLAEA-S--------ASQASCFSDGYPLPSWTWKK  443 (527)
T ss_dssp             CEEEECC-C--------CE---EEEECSSCCEEEEEC
T ss_pred             CeEEEeC-C--------CCEEEEEEEEEcCCeEEEEE
Confidence            6665554 1        23579999999999999973

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.52  E-value=7.9e-14  Score=88.64  Aligned_cols=100  Identities=13%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCCceEE--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~   77 (116)
                      |.++|+++||+.+..  +.++. ..++.|.|.++..+      |+| .|+|.+.|..+...+  ..|.|...     ...
T Consensus       121 ~~v~W~~~~g~~l~~--~~~~~~~~~~~L~i~~v~~~------d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~-----~~~  187 (290)
T 2o26_X          121 SQYSLIECDGKSLPT--DLTFVPNPKAGITIKNVKRA------YHRLCVRCAAQRDGTWLHSDKFTLKVREA-----IKA  187 (290)
T ss_dssp             EEEEEEETTSCCCCT--TCEEEEETTTEEEEESCCGG------GTTCEEEEEEEETTEEEECCCEEEEEECC-----CCS
T ss_pred             ceEEEEeCCCcCCCC--CCceeeCCCCCEEEecccHH------HCCCEEEEEEEECCceEEeEEEEEEEEeC-----CCC
Confidence            789997789988763  23333 33568999999766      999 999999998655443  44555421     011


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCce-eEEeC
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPK-IEWLI  116 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~-i~W~~  116 (116)
                       .|.+...+ ....+.+|+++.|.|.+.|.|.|. ++|+.
T Consensus       188 -~P~i~~~~-~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~  225 (290)
T 2o26_X          188 -IPVVSVPE-TSHLLKKGDTFTVVCTIKDVSTSVNSMWLK  225 (290)
T ss_dssp             -CCEEECSC-SBCCCCTTCCEEEEEEEEESSTTCEEEEEE
T ss_pred             -CCccccCC-CcceEecCCcEEEEEEEecCCcceeEEEec
Confidence             26665555 455788899999999999999997 99973

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.51  E-value=5.3e-14  Score=85.22  Aligned_cols=96  Identities=18%  Similarity=0.261  Sum_probs=65.1

Q ss_pred             cEEEEEccCCeeee----------ccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE---EEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIA----------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL---SRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~----------~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~---~~~~~v~~   68 (116)
                      |.++| ++++..+.          .....+....+..|.|.++..+      |+|.|+|.+.|..|...   ...|.|..
T Consensus        34 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~g~~~~~~~~~l~V~~  106 (209)
T 1nbq_A           34 PRVEW-KFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE------DTGTYTCMVSEEGGNSYGEVKVKLIVLV  106 (209)
T ss_dssp             EEEEE-EEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTT------SCSEEEEEEEETTSSCEECCEEECCEEB
T ss_pred             cEEEE-EEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHH------HCcEEEEEEecCCCCccceEEEEEEEec
Confidence            68999 66654421          1112234455578999999766      99999999999876332   23344433


Q ss_pred             CcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         69 GSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        69 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      +          |.+...+ ....+..|+.+.|.|.+ .|.|.|.++|+
T Consensus       107 ~----------p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~v~W~  143 (209)
T 1nbq_A          107 P----------PSKPTVN-IPSSATIGNRAVLTCSEQDGSPPSEYTWF  143 (209)
T ss_dssp             C----------CCCCCCC-CBSEEETTSCEEECCCCCSCBSCCEEEEE
T ss_pred             C----------CcCCCcc-cccceecCCEEEEEEeCCCCCCCceeEEE
Confidence            2          3332222 33457889999999997 99999999997

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.51  E-value=3.1e-13  Score=82.08  Aligned_cols=102  Identities=25%  Similarity=0.409  Sum_probs=67.4

Q ss_pred             cEEEEEccCCeeeeccc----cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~----~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~   75 (116)
                      |.++| +++|..+....    ..+....++.+.+..+...+ ....|+|.|+|.+.|..|...+  ..+.|...      
T Consensus        39 ~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~------  110 (212)
T 2v9r_A           39 PTIEW-YKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR-KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL------  110 (212)
T ss_dssp             CEEEE-EETTEECCCTTTCTTCSEEECTTSCEEESSCCCCS-SCCCSCEEEEEEEEETTEEEECCCEEEEECEE------
T ss_pred             CEEEE-EECCEEeeccccccccceEEecCCcEEEEEEEecC-CCcccCeEEEEEEECCCCceeecceEEEEEec------
Confidence            68999 88888876421    12334455555554431100 0234999999999999876543  34444331      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                         .+.+...+ ....+..|+.+.|.|.+ .|.|.|.++|+
T Consensus       111 ---~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~v~W~  147 (212)
T 2v9r_A          111 ---RDDFRQNP-SDVMVAVGEPAVMECQPPRGHPEPTISWK  147 (212)
T ss_dssp             ---CSSCSBCC-CCEEEETTSCEEEECBCCCEESCCEEEEE
T ss_pred             ---cccceeCC-CceEecCCCcEEEEEecCCCCCCCEEEEE
Confidence               13443444 56778899999999998 89999999997

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.51  E-value=1.2e-13  Score=83.86  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=53.8

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee-
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-  104 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-  104 (116)
                      ..|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+          |.+...+ ....+..|+.+.|.|.+ 
T Consensus        84 ~~L~i~~v~~~------D~G~Y~C~~~~~~~~~~~~~~l~V~~~----------p~~~~~~-~~~~~~~g~~v~l~C~~~  146 (214)
T 3jz7_A           84 ASINVTNLQLS------DIGTYQCKVKKAPGVANKKFLLTVLVK----------PSGTRCF-VDGSEEIGNDFKLKCEPK  146 (214)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECC----------CBSCEEE-EESCCBTTCCEEEEEECS
T ss_pred             ccEEEccCChh------hCeEEEEEEEeCCCccccEEEEEEEcC----------CCCceee-eecceecCCcEEEEecCC
Confidence            47999999766      999999999999876553 55555543          3332221 12235779999999999 


Q ss_pred             cCcCCceeEEe
Q psy11568        105 QGSPTPKIEWL  115 (116)
Q Consensus       105 ~g~P~p~i~W~  115 (116)
                      .|.|.|.++|+
T Consensus       147 ~g~p~~~v~W~  157 (214)
T 3jz7_A          147 EGSLPLQFEWQ  157 (214)
T ss_dssp             BCCSSCEEEEE
T ss_pred             CCCCCCEEEEE
Confidence            89999999997

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.51  E-value=1e-13  Score=86.20  Aligned_cols=76  Identities=9%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE------EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL------SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL  100 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~------~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  100 (116)
                      ..|.|.++..+      |+|.|+|.+.|..+...      ...|.|...      ..+ |.+....+....+.+|+.+.|
T Consensus        90 ~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~------~~~-~~~~~~~~~~~~v~~g~~v~L  156 (250)
T 2fbo_J           90 PTLRLTHVHPQ------DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH------TPS-NNVHVSTAEVVQVDEGNDITM  156 (250)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEECTTCCSGGGEEEEEEEEEETTT------SCC-SCCEECCCSEEECCTTCCEEE
T ss_pred             ceEEEeeCChh------hCeEEEEEeccCccCCcccccceeEEEEEecc------CCC-CeEEEecCceEEecCCCcEEE
Confidence            47999999766      99999999999876431      233444331      001 344444446677778999999


Q ss_pred             EeeecCcCCceeEEe
Q psy11568        101 DCAAQGSPTPKIEWL  115 (116)
Q Consensus       101 ~C~~~g~P~p~i~W~  115 (116)
                      .|.+.|.|.|.++|+
T Consensus       157 ~C~~~g~p~p~v~W~  171 (250)
T 2fbo_J          157 TCPCTDCANANVTWY  171 (250)
T ss_dssp             CCCEESCTTCEEEEE
T ss_pred             EEEecCCCCCeeEEE
Confidence            999999999999997

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.51  E-value=2.9e-13  Score=82.93  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             cEEEEEcc--CCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeec
Q psy11568          2 YVLLWLIR--DNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~--~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~   76 (116)
                      |.++|+++  ||..+...  .+.. ..++.|.|.++..+      |+|.|+|.|.|..+...+  ..|.|...       
T Consensus        38 ~~v~w~~~~~~g~~~~~~--~~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~n~~~~~~s~~~~l~v~~~-------  102 (213)
T 2x1w_L           38 LNVSLCARYPEKRFVPDG--NRISWDSKKGFTIPSYMIS------YAGMVFCEAKINDESYQSIMYIVVVVGY-------  102 (213)
T ss_dssp             CCEEEEEETTTEEECCCS--SSCEEETTTEEEEEGGGTT------TCSEEEEEEC----CEECCCEEEEECBC-------
T ss_pred             cEEEEEhhcCCCccccCC--CcccccCCccEEEccCChh------cCceEEEEEEECCeeEEEEEEEEEEeCC-------
Confidence            67899444  57666532  2223 34568999999766      999999999986544443  33444221       


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCC--ceeEEeC
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPT--PKIEWLI  116 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~--p~i~W~~  116 (116)
                      . .|.+...++....+.+|+++.|.|.+.|.|.  +.++|+.
T Consensus       103 ~-~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~  143 (213)
T 2x1w_L          103 R-IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY  143 (213)
T ss_dssp             C-EEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC
T ss_pred             c-ccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe
Confidence            1 1445555545668899999999999998654  4789963

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.50  E-value=3e-13  Score=82.78  Aligned_cols=70  Identities=24%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|+|.+.| .|... ...|.|..+          +...... ....+..|+.+.|.|.+.|
T Consensus        81 ~L~I~~v~~~------D~G~Y~C~~~~-~~~~~~~~~l~V~~~----------~~~~~~~-~~~~~~~g~~v~L~C~~~g  142 (222)
T 3sbw_C           81 ALQITDVKLQ------DAGVYRCMISY-GGADYKRITVKVNAP----------YNKINQR-ILVVDPVTSEHELTCQAEG  142 (222)
T ss_dssp             EEEESSCCGG------GCEEEEEEEES-SSEEEEEEEEEEEBC----------CCCCEEE-EEEEETTTTEEEEEEEEEE
T ss_pred             EEEEcCcccc------cCeEEEEEEEe-CCCceeEEEEEEECC----------CCCCCce-eeeeecCCCcEEEEEEecC
Confidence            7999999766      99999999999 44333 244555543          2111111 1125667999999999999


Q ss_pred             cCCceeEEe
Q psy11568        107 SPTPKIEWL  115 (116)
Q Consensus       107 ~P~p~i~W~  115 (116)
                      .|.|.++|+
T Consensus       143 ~P~p~i~W~  151 (222)
T 3sbw_C          143 YPKAEVIWT  151 (222)
T ss_dssp             BSCCEEEEE
T ss_pred             CCCCeEEEE
Confidence            999999997

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.50  E-value=1.9e-13  Score=90.11  Aligned_cols=99  Identities=27%  Similarity=0.449  Sum_probs=68.6

Q ss_pred             CcEEEEEccCCeeeeccccceE--EeeCCeEEec----CCCCCCCCCCCCceEEEEEEEcCCCceEEEE--EEEEeCcEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI--ALSNGSLMFP----PFPETGFRPDVHSTVYRCRASNEAGVILSRF--VHVKAGSVV   72 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~--~~~~~~l~i~----~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~--~~v~~~~~~   72 (116)
                      .|.++| +++|..+......+.  ...++.|.|.    ++..      .|+|.|+|.+.|..|...+..  |.|...   
T Consensus        46 ~~~v~W-~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~------~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---  115 (404)
T 3p3y_A           46 APSFHW-TRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPE------EYEGEYQCFARNKFGTALSNRIRLQVSKS---  115 (404)
T ss_dssp             CCEEEE-EETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTT------SSCEEEEEEEECSSCEEEEEEEEEEECCC---
T ss_pred             CCeEEE-EECCEEeeeecCCcceEecCCceEEEEeccCCCCc------cCCEEEEEEEEcCCCeEeeeeEEEEEecc---
Confidence            368999 899998754322222  2345566664    5544      499999999999998876533  333332   


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEeC
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWLI  116 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~~  116 (116)
                             |.+.........+.+|+.+.|.|.+ .+.|.+.++|+.
T Consensus       116 -------p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~  153 (404)
T 3p3y_A          116 -------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS  153 (404)
T ss_dssp             -------CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEEC
T ss_pred             -------CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeC
Confidence                   3333333355788899999999999 889999999973

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=92.05  Aligned_cols=94  Identities=20%  Similarity=0.322  Sum_probs=59.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~   76 (116)
                      .|.++| ++++..+.....  ....+   ..|.|.++..+      |+|.|+|.|.|..|.... ..|.|..+       
T Consensus        77 ~p~i~W-~~~~~~l~~~~~--~~~~~~~~~sL~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~~~-------  140 (423)
T 3qs7_E           77 NISCLW-VFKHSSLNCQPH--FDLQNRGVVSMVILKMTET------QAGEYLLFIQSEATNYTILFTVSIRNT-------  140 (423)
T ss_dssp             SCEEEE-EETTEEECCCCB--C-----CEEEEEESSCCSS------SCSEEEEEEEC--CEEEEEEEEEEC---------
T ss_pred             CCeEEE-EECCCccCccce--eccccceEEEEEEeecCcc------cCEEEEEEEEcCCCcEEEEEEEEEecC-------
Confidence            378999 777766643111  11111   15899999766      999999999999887653 44555432       


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                         |.+...  ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       141 ---p~~~~~--~p~~~~~~~~~~L~C~a~G~P~P~i~W~  174 (423)
T 3qs7_E          141 ---LLYTLR--RPYFRKMENQDALVCISESVPEPIVEWV  174 (423)
T ss_dssp             ------CEE--EEEEEECSSSSCEEEEEEESSCCEEEEE
T ss_pred             ---cccccc--CCcEeccCCceEEEEEEeeecCCeEEEE
Confidence               333211  1123445888899999999999999997

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.49  E-value=8e-14  Score=95.95  Aligned_cols=96  Identities=11%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             CcEEEEEccCCeeeeccccce--------EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLR--------IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVV   72 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~--------~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~   72 (116)
                      .|.|+| +++|..+.......        .....+.|.|.++..+      |+|.|+|.|.|.  ...+..|.|...   
T Consensus       257 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~N~--~~~~~~L~V~~~---  324 (527)
T 3qs9_E          257 GFGLTW-ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN------DTGYYTCSSSKH--PSQSALVTIVEK---  324 (527)
T ss_dssp             CCCEEE-ECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGG------GCEEEEEEETTE--EEEEEEEEEC-----
T ss_pred             CeEEEE-EECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcc------cCeEEEEEEEeC--CCceEEEEEEcc---
Confidence            378999 88888775421111        1122346999999766      999999999998  222344444432   


Q ss_pred             eeeccCCCceEecC-CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         73 SLLDIQGPLFRIEP-PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        73 ~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                             |.+...+ .....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       325 -------p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~  361 (527)
T 3qs9_E          325 -------GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT  361 (527)
T ss_dssp             -------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred             -------CccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEE
Confidence                   4443333 23466778999999999999999999997

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.48  E-value=6.5e-13  Score=87.63  Aligned_cols=101  Identities=28%  Similarity=0.404  Sum_probs=69.6

Q ss_pred             cEEEEEccCCeeeeccccce-EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceEE--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR-IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~-~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~~--~~~~v~~~~~~~~~~~   77 (116)
                      |.++| +++|..+......+ ....++.|.|.++...+- +..|+|.|+|.+.+.. +...+  ..+.+..+        
T Consensus        52 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p--------  121 (403)
T 3laf_A           52 PVIKW-KKDGLILALGMDDRKQQLPNGSLLIQNILHSRH-HKPDEGLYQCEASLGDSGSIISRTAKVMVAGP--------  121 (403)
T ss_dssp             CEEEE-EETTEECCTTSCTTEEECTTSCEEECSCCCBTT-BCSSCEEEEEEEECGGGCEEECCCEEEEECCC--------
T ss_pred             ceEEE-EECCEECccCCcccEEEecCCcEEEeeeeccCC-CCCcceEEEEEEEeCCCccEEEEEEEEEecCC--------
Confidence            67999 89999886532233 345567888888832210 1349999999999753 33333  22333222        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                        |.+...+ ....+.+|+++.|.|.+.|.|.|.++|+
T Consensus       122 --~~~~~~~-~~~~~~~G~~v~l~C~~~~~p~~~v~W~  156 (403)
T 3laf_A          122 --LRFLSQT-ESITAFMGDTVLLKCEVIGDPMPTIHWQ  156 (403)
T ss_dssp             --CEECSCC-CCEEEETTSCEEECCCEECSSCCEEEEE
T ss_pred             --CccccCC-CcEEEEcCCeEEEEEEEcccCCCeEEEE
Confidence              4444444 6788899999999999999999999997

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.48  E-value=4.8e-13  Score=79.85  Aligned_cols=88  Identities=11%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCce
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLF   82 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~   82 (116)
                      .+.| +++|..+.......   ....+.|.  +.+      |+|.|+|.+.|...  ....|.|..+          |.+
T Consensus        31 ~~~W-~k~~~~l~~~~~~~---~~~~l~i~--~~~------d~G~Y~C~~~n~~~--~~~~l~V~~~----------P~~   86 (184)
T 3b5h_A           31 GHRW-LKGGVVLKEDALPG---QKTEFKVD--SDD------QWGEYSCVFLPEPM--GTANIQLHGP----------PRV   86 (184)
T ss_dssp             EEEE-ESSSEEEECTTCCC---SEEEEEEC--GGG------CCEEEEEEEESTTS--CEEEEEECCS----------CCC
T ss_pred             EEEE-EeCCEEeecccccC---CcEEEEEe--chh------hCeEEEEEEECCcC--cEEEEEEecC----------Cce
Confidence            8999 88998886422110   11134444  333      99999999998432  2344545443          666


Q ss_pred             EecCCCeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568         83 RIEPPYRFEFSNESGGRLDCAAQGSP-TPKIEWL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~g~~~~l~C~~~g~P-~p~i~W~  115 (116)
                      ...+ ....+..|+.+.|.|.+.|.| .|.+.|+
T Consensus        87 ~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~i~W~  119 (184)
T 3b5h_A           87 KAVK-SSEHINEGETAMLVCKSESVPPVTDWAWY  119 (184)
T ss_dssp             EESC-SEEEECTTSCEEEEEECCCSSCCCEEEEE
T ss_pred             eecC-CCcEEcCCCcEEEEEEECCCCCCCeEEEE
Confidence            6665 677888999999999999999 8999997

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=83.63  Aligned_cols=97  Identities=14%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             cEEEEEccCCeeeeccccce-EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-E--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR-IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-S--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~-~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~--~~~~v~~~~~~~~~~~   77 (116)
                      +.+.| +++|..+....... ....++.|.|.++..+      |+|.|+|.+.|..|... +  ..|.|...       .
T Consensus        33 ~~~~W-~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~-------~   98 (196)
T 2d3v_A           33 QEYRL-VKEGSPEPWDTQNPLEPKNKARFSIPSMTEH------HAGRYRCYYYSPAGWSEPSDPLELVVTGF-------Y   98 (196)
T ss_dssp             CEEEE-EETTCSSCSEEECCCSSTTEEEEEESSCCGG------GCEEEEEEEEETTEECBCCCCEEEEEECS-------S
T ss_pred             cEEEE-EECCCCCCcccccccCCccccEEEeccCChh------HCeEEEEEEeCCCCcCCcCccEEEEecCC-------C
Confidence            47899 88887764211110 1112347999999766      99999999999876432 2  44544431       1


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..|.+...+  ...+.+|+++.|.|.+.+.| |.+.|+
T Consensus        99 ~~p~i~~~~--~~~v~~G~~v~L~C~~~~~p-~~~~W~  133 (196)
T 2d3v_A           99 NKPTLSALP--SPVVTSGENVTLQCGSRLRF-DRFILT  133 (196)
T ss_dssp             CCCEEEC-------------CEEEEEESSCC-SEEEEE
T ss_pred             CCCeEEccC--CccccCCCcEEEEEEcCCCC-CEEEEE
Confidence            115554333  34678899999999999999 999997

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.46  E-value=1.7e-13  Score=88.86  Aligned_cols=94  Identities=19%  Similarity=0.309  Sum_probs=66.1

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCCceEEEEE-EEEeCcEeeeeccCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILSRFV-HVKAGSVVSLLDIQG   79 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g~~~~~~~-~v~~~~~~~~~~~~~   79 (116)
                      |.|+| +++|..+....+  . ..++.|.|.++..+      |+| .|+|.+.|..|......+ .+...        + 
T Consensus        68 ~~v~W-~k~~~~~~~~~~--~-~~~~~L~i~~v~~~------D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~--------~-  128 (329)
T 3oq3_B           68 NVVNW-EKIGKTRRPLNR--R-VKNGDLWIANYTSN------DSHRRYLCTVTTKNGDCVQGIVRSHIRK--------P-  128 (329)
T ss_dssp             CEEEE-EECSSSCEECST--T-EETTEEEESSCCGG------GGGCCEEEEEECTTSCEEEEEEEEEECC--------C-
T ss_pred             CeeEE-EECCCCccccCc--e-eecceEEEcCCChH------hCCCcEEEEEEeCCCceeeEEEEEEEcC--------C-
Confidence            58999 888877653222  2 55789999999766      999 999999999987554221 12111        1 


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSP-TPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~p~i~W~  115 (116)
                      |.+...+ ....+.+|+.+.|.|.+.|.| .|.++|+
T Consensus       129 p~~~~~~-~~~~~~~G~~v~L~C~~~g~p~~~~i~W~  164 (329)
T 3oq3_B          129 PSCIPET-YELGTHDKYGIDLYCGILYAKHYNNITWY  164 (329)
T ss_dssp             CSCEEEE-EETTSSTTTCEEEECCCCSCCCCCEEEEE
T ss_pred             CcEeccc-cceEEeCCCcEEEEeccCCCCCCceEEEE
Confidence            3333322 222345699999999999999 9999997

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.45  E-value=7.2e-13  Score=81.80  Aligned_cols=98  Identities=10%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             cEEEEEccCCeeeeccccce-EEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-E--EEEEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR-IALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-S--RFVHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~-~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~--~~~~v~~~~~~~~~   75 (116)
                      |.+.| +++|..+....... ....++  .|.|.++..+      |+|.|+|.+.|..|... +  ..|.|...      
T Consensus        37 ~~~~W-~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~------  103 (218)
T 1uct_A           37 YLTQL-MIIKNSTYREIGRRLKFWNETDPEFVIDHMDAN------KAGRYQCQYRIGHYRFRYSDTLELVVTGL------  103 (218)
T ss_dssp             SEEEE-EEEETTEEEECSEECC----CCCEEEECSCCGG------GCEEEEEEEEETTTEEEECCCEEEEEECS------
T ss_pred             CEEEE-EECCCcccccccccCCCCcceeeEEEEcccccc------cCEEEEEEEEcCCCceeecCCEEEEEcCc------
Confidence            68999 88877664211110 112344  8999999766      99999999999876332 2  34444431      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       ...|.+...+  ...+.+|+++.|.|.+.+.|.|.+.|+
T Consensus       104 -~~~P~i~~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~  140 (218)
T 1uct_A          104 -YGKPFLSADR--GLVLMPGENISLTCSSAHIPFDRFSLA  140 (218)
T ss_dssp             -SCCCEEEESS--CSEECTTCCCEEEEECSSSCCSEEEEE
T ss_pred             -ccCCEEEeCC--CCccCCCCCEEEEEeCCCCCCCEEEEE
Confidence             1125555444  346789999999997778888999996

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.45  E-value=1e-12  Score=85.47  Aligned_cols=100  Identities=19%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             cEEEEEccCCee------ee-ccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTV------IA-YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~------~~-~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~   73 (116)
                      |.|+| ++++..      +. .....+....++.|.|.++..+      |+|.|+|.+.|..+.... ..|.|.....  
T Consensus        48 ~~i~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~--  118 (349)
T 4dep_C           48 LTLIW-YWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN------DTGNYTCMLRNTTYCSKVAFPLEVVQKDS--  118 (349)
T ss_dssp             CEEEE-EEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEEEECCCT--
T ss_pred             ceEEE-EECCCCCcccccccccccCceEeecCCEEEEccCChh------hCEEEEEEEecCCceEEEEEEEEEecCCc--
Confidence            78999 776631      11 0134456667889999999766      999999999999876663 5565554200  


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeee-----cCcCCceeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-----QGSPTPKIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-----~g~P~p~i~W~  115 (116)
                         .. +..... +....+..|+.+.|.|.+     .|.|.|.++|+
T Consensus       119 ---~~-~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~  160 (349)
T 4dep_C          119 ---CF-NSPMKL-PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY  160 (349)
T ss_dssp             ---TS-CCSCCC-CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEE
T ss_pred             ---cc-Cccccc-CcceeeecCccEEEEcCCCcccccCCCCceEEEe
Confidence               00 111111 245677889999999985     78999999997

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.45  E-value=8.7e-13  Score=90.06  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             EEEEEccCCeee--eccccce-----EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeee
Q psy11568          3 VLLWLIRDNTVI--AYVKDLR-----IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSL   74 (116)
Q Consensus         3 ~v~W~~~~g~~~--~~~~~~~-----~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~   74 (116)
                      .++| +++|..+  .......     .....+.|.|.++..+      |+|.|+|.+.|..|...+ ..|.|..+     
T Consensus       243 ~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~~-----  310 (524)
T 2ec8_A          243 YSTW-KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN------DSGVFMCYANNTFGSANVTTTLEVVDK-----  310 (524)
T ss_dssp             EEEE-EETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTT------TCEEEEEEEECSSCEEEEEEEEEEESS-----
T ss_pred             EEEE-EeCCCCCccccccccccccCCccceEEEEEECCCCHH------HCEEEEEEEEecCCceEEEEEEEEecc-----
Confidence            3999 8887773  2111111     1223457999999766      999999999999987764 55555543     


Q ss_pred             eccCCCceEecC--CCeEEEeCCCcEEEEeeecCcCCce-eEEeC
Q psy11568         75 LDIQGPLFRIEP--PYRFEFSNESGGRLDCAAQGSPTPK-IEWLI  116 (116)
Q Consensus        75 ~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~g~P~p~-i~W~~  116 (116)
                           |.+...+  .....+.+|+.+.|.|.+.|.|.|. ++|+.
T Consensus       311 -----p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k  350 (524)
T 2ec8_A          311 -----GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY  350 (524)
T ss_dssp             -----CEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEES
T ss_pred             -----CceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEE
Confidence                 5554433  2578889999999999999999999 99974

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.45  E-value=4.1e-13  Score=81.95  Aligned_cols=93  Identities=14%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             cEEEEEccCCeeeeccccceEEe-eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~-~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      |.|+|+...+.++.   +..... .++.|.|.++..+      |+|.|.|.|.|..|.... ..|.|..+          
T Consensus        31 p~i~W~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~l~V~~~----------   91 (202)
T 1vca_A           31 PFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPVSFG------NEHSYLCTATCESRKLEKGIQVEIYSF----------   91 (202)
T ss_dssp             CEEEEEETTCCCCS---SEEEEETTEEEEEESSCCGG------GCSEEEEEEEETTEEEEEEEEEEEEBC----------
T ss_pred             CeEEEECCCCCCcc---ceEEEcCCccEEEECcCCHH------HCEEEEEEEEECCceEeeEEEEEEEeC----------
Confidence            78999432333321   111111 2236999999766      999999999999876543 45555543          


Q ss_pred             Cc-eEecCCCeEEEeCCCcEEEEeeecCcCC---ceeEEe
Q psy11568         80 PL-FRIEPPYRFEFSNESGGRLDCAAQGSPT---PKIEWL  115 (116)
Q Consensus        80 p~-~~~~~~~~~~~~~g~~~~l~C~~~g~P~---p~i~W~  115 (116)
                      |. ....+ . ..+.+|+.+.|.|.+.|.|+   +.++|+
T Consensus        92 p~~~~~~~-~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~  129 (202)
T 1vca_A           92 PKDPEIHL-S-GPLEAGKPITVKCSVADVYPFDRLEIDLL  129 (202)
T ss_dssp             CSCCEEEE-S-SCEETTSCEEEEEEEEEEBSGGGEEEEEE
T ss_pred             CCCCEeCC-c-eEEcCCCCEEEEEEECCcCCCCCeEEEEE
Confidence            22 22222 2 45688999999999998643   368996

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.44  E-value=9e-14  Score=91.55  Aligned_cols=96  Identities=21%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             cEEEEEccCCeeeecccc-ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~   78 (116)
                      |.++| +++|..+..... ......++.|.|.++..+      |+|.|+|.+.|..|...+  ..+.+...      .  
T Consensus        37 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~g~~~s~~~~l~v~~~------~--  101 (395)
T 1bih_A           37 VKYSW-KKDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQCFAETPAGVASSRVISFRKTYL------I--  101 (395)
T ss_dssp             CEEEE-EESSSBCCTTTTTEEECTTSCCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEEE------E--
T ss_pred             ceEEE-EECCcCcccccceEEEecCCceEEEecCCCC------CCcEEEEEEEeCCCeEEeEEEEEEEEEe------e--
Confidence            78999 889988865332 223334668999999766      999999999999887653  33333321      0  


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      .|.+  .+ ....+.+|+.+.|.|.+ .+.|.|.++|+
T Consensus       102 ~p~~--~~-~~~~~~~G~~v~l~C~~~~~~p~~~v~W~  136 (395)
T 1bih_A          102 ASPA--KT-HEKTPIEGRPFQLDCVLPNAYPKPLITWK  136 (395)
T ss_dssp             CCCC--EE-EEECCBTTEEEEECCCCCEEESCCEEEEE
T ss_pred             cCCc--CC-cceeeeeCCcEEEEecCCCCCCCCeEEEE
Confidence            1333  22 35566789999999996 88999999997

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.44  E-value=3.9e-13  Score=81.28  Aligned_cols=97  Identities=12%  Similarity=0.168  Sum_probs=64.2

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc-eEE--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-~~~--~~~~v~~~~~~~~~~~   77 (116)
                      |.+.| +++|..+......... ..++.|.|.++..+      |+|.|+|.+.|..|. ..+  ..|.|...       .
T Consensus        33 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~-------~   98 (196)
T 3p2t_A           33 REYRL-DKEESPAPWDRQNPLEPKNKARFSIPSMTED------YAGRYRCYYRSPVGWSQPSDPLELVMTGA-------Y   98 (196)
T ss_dssp             CEEEE-EETTSCSCSEEECCCSSSSEEEEEESSCCGG------GCEEEEEEEEETTEEBCCCCCEEEEEECS-------S
T ss_pred             CEEEE-EECCCCCcccccccccCCceEEEEeccCCcc------cCceEEEEEeCCCcccCCCccEEEEecCC-------C
Confidence            67899 8888776421110000 12347999999766      999999999999873 222  44545431       1


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..|.+...+ .. .+.+|+++.|.|.+.+ +.+.+.|+
T Consensus        99 ~~p~~~~~~-~~-~v~~G~~v~L~C~~~~-~~~~~~w~  133 (196)
T 3p2t_A           99 SKPTLSALP-SP-LVTSGKSVTLLCQSRS-PMDTFLLC  133 (196)
T ss_dssp             CCCEEEEES-CS-EECTTCCEEEEEEEEE-EEEEEEEE
T ss_pred             CCCEEEeCC-cc-eecCCCeEEEEEecCC-CCCEEEEE
Confidence            125555554 22 6688999999999988 45688886

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.44  E-value=1.3e-13  Score=89.33  Aligned_cols=97  Identities=19%  Similarity=0.247  Sum_probs=69.6

Q ss_pred             cEEEEEccCCeee--eccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVI--AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~--~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~   78 (116)
                      |.|+| +++|..+  ......+....++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|...         
T Consensus        55 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~~~n~~g~~~~~~~l~V~~~---------  118 (339)
T 3o4o_C           55 INLTW-HKNDSARTVPGEEETRMWAQDGALWLLPALQE------DSGTYVCTTRNASYCDKMSIELRVFEN---------  118 (339)
T ss_dssp             CBCCC-EESSCCSCCSCCSSSCEEEETTEEEESSBCTT------CCEEEECCEEETTEEEEEEEEEEEECS---------
T ss_pred             ceEEE-EECCCCcccCccccccEEeeCCeEEECCCCcc------cCEEEEEEEECCcceEEEEEEEEEEcC---------
Confidence            57899 8888774  32224456677889999999766      999999999999875553 45555542         


Q ss_pred             CCceE-ecCCCeEEEeCCCcEEEEee-----ecCcCCceeEEe
Q psy11568         79 GPLFR-IEPPYRFEFSNESGGRLDCA-----AQGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~-~~~~~~~~~~~g~~~~l~C~-----~~g~P~p~i~W~  115 (116)
                       +... ........+..|+.+.|.|.     +.|.|.|.++|+
T Consensus       119 -~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~  160 (339)
T 3o4o_C          119 -TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWY  160 (339)
T ss_dssp             -CGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCE
T ss_pred             -CCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEe
Confidence             1110 00012346788999999999     889999999997

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.43  E-value=3.3e-12  Score=77.31  Aligned_cols=97  Identities=16%  Similarity=0.280  Sum_probs=61.8

Q ss_pred             cEEEEEccCCeeeecc--------------cc--ceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EE
Q psy11568          2 YVLLWLIRDNTVIAYV--------------KD--LRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RF   63 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~--------------~~--~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~   63 (116)
                      +.|.| +++|..+...              +.  .|.. ..++.|.|.+++.+      |+|.|.|.+.+..+.... ..
T Consensus        29 ~~v~W-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~  101 (193)
T 2if7_A           29 NFITW-LFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKME------DTGSYRAQISTKTSAKLSSYT  101 (193)
T ss_dssp             CEEEE-EETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGG------GCEEEEEEEECSSCEEEEEEE
T ss_pred             cEEEE-EECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcc------cCceEEEEEEecCCCeEEEEE
Confidence            58999 7777655310              00  1322 24568999999766      999999999999876543 44


Q ss_pred             EEEEeCcEeeeeccCCCceEecCCCeEEEeCCC-cEEEEeeecCc-CCceeEEe
Q psy11568         64 VHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES-GGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        64 ~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~g~-P~p~i~W~  115 (116)
                      |.|..+..       .|.+...+ .  ....|. ++.|.|.+.|. |.|.++|+
T Consensus       102 L~V~~~~~-------~p~i~~~~-~--~~~~g~~~v~L~C~~~g~~p~p~i~W~  145 (193)
T 2if7_A          102 LRILRQLR-------NIQVTNHS-Q--LFQNMTCELHLTCSVEDADDNVSFRWE  145 (193)
T ss_dssp             EEEECCCE-------EEEEEECC-C-----CSSEEEEEEEEEESCCTTCEEEEE
T ss_pred             EEEEccCC-------CCeEecCc-e--eecCCCceEEEEEEEecCCCceEEEEE
Confidence            55543200       13333332 1  123455 79999999995 58999997

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.43  E-value=1.6e-12  Score=82.29  Aligned_cols=99  Identities=9%  Similarity=0.084  Sum_probs=68.3

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceE-EEEEEEEeCcEeeeeccCCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVIL-SRFVHVKAGSVVSLLDIQGP   80 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~-~~~~~v~~~~~~~~~~~~~p   80 (116)
                      .++|++++|..+..... .....++.|.|.++..+      |+|.|+|.+.+. .+... ...|.|...     ... .|
T Consensus       121 ~v~W~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~------d~G~Y~C~a~~~~~~~~~~~~~l~V~~~-----~~~-~p  187 (289)
T 3ejj_X          121 SVSLMREGGRQVLRKTV-YFFSPWRGFIIRKAKVL------DSNTYVCKTMVNGRESTSTGIWLKVNRV-----HPE-PP  187 (289)
T ss_dssp             SEEEEEGGGEECCTTCC-EEEETTTEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEESS-----CCC-CC
T ss_pred             EEEEEecCCeecCCCcc-EEECCCCCEEEeecccc------cCEEEEEEEEeCCCccccccEEEEEEEC-----CCC-CC
Confidence            38996678887753222 12344668999999766      999999999943 33332 244555421     001 26


Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~p~i~W~  115 (116)
                      .+...+ ....+..|+++.|.|.+.+ .|.|.++|+
T Consensus       188 ~i~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~i~W~  222 (289)
T 3ejj_X          188 QIKLEP-SKLVRIRGEAAQIVCSATNAEVGFNVILK  222 (289)
T ss_dssp             EEEEES-SSEECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred             eEEecC-CceEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence            666665 5666778999999999998 799999997

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=88.16  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=65.8

Q ss_pred             CcEEEEEccCCeeeecccc---ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTVIAYVKD---LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~---~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~   76 (116)
                      .|.|+| ++++.++.....   .......+.|.|..+..+      |+|.|+|.|.|..+... ...+.+...       
T Consensus       144 ~~~i~W-~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~------d~g~Y~C~a~n~~~~~~~~~~~~l~V~-------  209 (308)
T 4fom_A          144 VAHIDW-EGDLGEMESTTTSFPNETATIISQYKLFPTRFA------RGRRITCVVKHPALEKDIRYSFILDIQ-------  209 (308)
T ss_dssp             CCEEEE-CCCSSBCCEEEEECTTSCEEEEEEEEECCCGGG------TTCEEEEEEECTTCSSCEEEEEECCCC-------
T ss_pred             CceEEE-EECCcccccccceeeeecccccccceEEeeeec------CCccEEEEEEccCCCCceEEeEEEEEe-------
Confidence            378999 888887753110   001111225888888665      99999999999876544 233322211       


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      . .|.+...+.....+..|+.+.|.|.+.|.|.| .+.|+
T Consensus       210 ~-~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~  248 (308)
T 4fom_A          210 Y-APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWS  248 (308)
T ss_dssp             E-EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECC
T ss_pred             c-CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEE
Confidence            0 15554444345566778999999999999999 68997

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.42  E-value=7.6e-14  Score=90.23  Aligned_cols=104  Identities=22%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEee-------
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVS-------   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~-------   73 (116)
                      |.++| +++|..+..  ..++...++.|.|.++..+      |+|.|+|.+.|. |... ...|.|.......       
T Consensus        39 ~~v~W-~k~g~~~~~--~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~  108 (334)
T 1ry7_B           39 GPTVW-VKDGTGLVP--SERVLVGPQRLQVLNASHE------DSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGED  108 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceEE-EECCeeCCC--cccEEeccceEEEeecccc------cCEEEEEEEEeC-CeEEEEEEEEEeccCcccccccccc
Confidence            68999 899988753  2344455678999999766      999999999998 5444 2445544310000       


Q ss_pred             ------eeccCCCceEecC---CCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         74 ------LLDIQGPLFRIEP---PYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        74 ------~~~~~~p~~~~~~---~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                            ....+ |.+....   .....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus       109 ~~~~~~~~~~~-p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~  159 (334)
T 1ry7_B          109 EAEDTGVDTGA-PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK  159 (334)
T ss_dssp             ----------C-CCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCB
T ss_pred             ccccccccCCC-CEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEE
Confidence                  00001 3332211   134678889999999999999999999973

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.42  E-value=4.1e-13  Score=87.01  Aligned_cols=101  Identities=16%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCce----E-EEEEEEEeCcEeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI----L-SRFVHVKAGSVVSL   74 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~----~-~~~~~v~~~~~~~~   74 (116)
                      |.++| +++|..+..... ++....  +.|.|.++..+      |+|.|+|.+.|..|..    . ...|.|....    
T Consensus       155 ~~v~W-~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~----  222 (339)
T 3o4o_C          155 VKIQW-YKDSLLLDKDNE-KFLSVRGTTHLLVHDVALE------DAGYYRCVLTFAHEGQQYNITRSIELRIKKKK----  222 (339)
T ss_dssp             CCBCC-EESSCBCCTTCS-SEEECTTSSEEEESSCCGG------GCEEEEEEEECCBTTBCCEEEEEEEEEEECCC----
T ss_pred             ceEEE-ecCCeeCCCCCc-eeEEcCCcceEEEcccCHh------hCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC----
Confidence            67899 889988864322 333332  47999999766      9999999999987642    2 2445444320    


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeee---cCcC-CceeEEeC
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAA---QGSP-TPKIEWLI  116 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~g~P-~p~i~W~~  116 (116)
                      ... .|.+... +....+..|+++.|.|.+   .|.| .|.+.|+.
T Consensus       223 ~~~-~P~i~~~-~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~  266 (339)
T 3o4o_C          223 EET-IPVIISP-LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTA  266 (339)
T ss_dssp             CCC-CCEECCC-SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEES
T ss_pred             CCC-CCEEecC-CceeEeccCCCEEEEEEEECCCCCCCCceEEEEE
Confidence            001 1455444 366677889999999999   8999 88999973

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.42  E-value=6.6e-13  Score=79.97  Aligned_cols=96  Identities=14%  Similarity=0.132  Sum_probs=58.6

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecC-CCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEee--e---
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVS--L---   74 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~-v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~--~---   74 (116)
                      +.|+| ++||.++...       .++.|.|.+ +..+      |+|.|+|.|.|..|.... ..+.|.......  .   
T Consensus        27 ~~i~W-~k~g~~l~~~-------~~~~L~I~~~~~~~------D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~   92 (186)
T 1jbj_A           27 ENLKW-EKNGQELPQK-------HDKHLVLQDFSEVE------DSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKK   92 (186)
T ss_dssp             TTCEE-EETTEEECSC-------CCSEEEEESCCTTT------SCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCC
T ss_pred             CceEE-EECCEECCCC-------CCCEEEECCCCccc------cCEEEEEEEEeCCCcEEEEEEEEEecccccccccccc
Confidence            45899 9999988632       345899999 8665      999999999999887432 323222110000  0   


Q ss_pred             ---e-ccCCCceE---ecCCCeE---EEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         75 ---L-DIQGPLFR---IEPPYRF---EFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        75 ---~-~~~~p~~~---~~~~~~~---~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                         . ..+ |.+.   .......   .+..|+++.|.|.+   |.|.++|+
T Consensus        93 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~  139 (186)
T 1jbj_A           93 DDAKKDDA-KKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWL  139 (186)
T ss_dssp             CCCSCCSS-STTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEE
T ss_pred             cccccCCc-cccccccccccccccceecCCCCeEEEEeeC---CCCeEEEE
Confidence               0 000 0000   0000111   23389999999998   88999997

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.42  E-value=2.3e-12  Score=78.71  Aligned_cols=84  Identities=20%  Similarity=0.324  Sum_probs=60.7

Q ss_pred             EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceE
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFR   83 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~   83 (116)
                      ++| +++|..+..        ..+.|.|.++..+      |+|.|+|.+.|..... ...|.|...          |.+.
T Consensus        40 v~W-~k~g~~l~~--------~~~~L~i~~v~~~------D~G~Y~C~a~n~~~s~-~~~l~V~~~----------p~~~   93 (204)
T 3sgj_C           40 TQW-FHNESLISS--------QASSYFIDAATVD------DSGEYRCQTQLSTLSD-PVQLEVHIG----------WLLL   93 (204)
T ss_dssp             EEE-EETTEEESC--------CSSEEEESSCCGG------GCEEEEEEETTSBCCC-CEEEEEECS----------SEEE
T ss_pred             EEE-EECCEEccc--------CccEEEEeccccc------CCEEEEEEeCCCcccc-cEEEEEecC----------ceEe
Confidence            899 889887753        1268999999766      9999999999853222 234444432          4444


Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCc-CCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~-P~p~i~W~  115 (116)
                      ..+ . ..+.+|+++.|.|.+.+. |.|.++|+
T Consensus        94 ~~~-~-~~v~~G~~v~L~C~~~~~~p~~~v~W~  124 (204)
T 3sgj_C           94 QAP-R-WVFKEEDPIHLRCHSWKNTALHKVTYL  124 (204)
T ss_dssp             ECS-C-SEEETTCCEEEEEEEGGGCCCEEEEEE
T ss_pred             cCC-c-eeEeCCCcEEEEEEecCCCCCceEEEE
Confidence            444 2 567789999999999776 56889996

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.41  E-value=4.6e-13  Score=86.07  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=64.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVS   73 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~   73 (116)
                      .|.++| ++++..+...... ....++      .|.|.....+      |+|.|+|.|.|..+... ...+.+...    
T Consensus       147 ~~~i~W-~~~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~~~~~------d~g~Y~C~a~n~~~~~~~~~~~~l~V~----  214 (313)
T 4fqp_A          147 PAQITW-HSDLGGMPNTSQV-PGFLSGTVTVTSLWILVPSSQV------DGKNVTCKVEHESFEKPQLLTVNLTVY----  214 (313)
T ss_dssp             CCEEEE-EETTCCEEEEEEE-ECSSTTCEEEEEEEEECCCGGG------TTCEEEEEEECTTSSSCEEEEEECCBC----
T ss_pred             CcEEEe-ecCCcccccccee-eeecccccccceeeeecccccc------cCeeEEEEEEccCcCccceeeeecccc----
Confidence            378999 8887776531111 111122      3777777555      99999999999866543 333322221    


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                         .+ |.+...+.....+..|+.+.|.|.+.|.|.| .++|+
T Consensus       215 ---~~-P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~  253 (313)
T 4fqp_A          215 ---YP-PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS  253 (313)
T ss_dssp             ---EE-EEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEE
T ss_pred             ---cC-CccccccccceeecCCCeEEEEEEecCCCCCcEEEEE
Confidence               11 5655554455566778999999999999999 69997

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=1.1e-12  Score=86.41  Aligned_cols=84  Identities=19%  Similarity=0.213  Sum_probs=43.4

Q ss_pred             CcEEEEEccCCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc
Q psy11568          1 MYVLLWLIRDNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~   77 (116)
                      +|.|+| ++++..+..  ....++...+++|.|.++..+      |+|.|+|.|.|..|.... ..|.|...        
T Consensus       274 ~p~i~W-~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~~~--------  338 (361)
T 2xot_A          274 GMTKVW-VSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE------DGGVYTCYAMGETFNETLSVELKVYNF--------  338 (361)
T ss_dssp             TCEEEE-ECTTSCBCCSCCSSSSEEEETTEEEESSCCTT------SCEEEEEEEECSSCEEEEEEEEEEESS--------
T ss_pred             CCeEEE-EeCCCeeEeecccCCceEeecCeEEEeecCcc------cCEEEEEEEecCCCccEEEEEEEEEee--------
Confidence            478999 665544332  122244447789999999766      999999999999887764 44444321        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeE
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIE  113 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~  113 (116)
                        +            .+|+.+.+.|.+.|.|.|.|.
T Consensus       339 --~------------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          339 --T------------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             --C------------CC-------------------
T ss_pred             --e------------ccCCceEEEEEeCCCCCCccc
Confidence              2            457899999999999999874

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.41  E-value=7.8e-13  Score=80.05  Aligned_cols=97  Identities=14%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             cEEEEEccCCeeeeccccce-EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC-Cc-e-E-EEEEEEEeCcEeeeec
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR-IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GV-I-L-SRFVHVKAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~-~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~-~-~-~~~~~v~~~~~~~~~~   76 (116)
                      +.++| +++|..+....... ....++.|.|.++..+      |+|.|+|.+.|.. |. . . ...|.|...       
T Consensus        33 ~~~~W-~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~-------   98 (198)
T 1ugn_A           33 QEYRL-YREKKTAPWITRIPQELVKKGQFPIPSITWE------HTGRYRCYYGSDTAGRSESSDPLELVVTGA-------   98 (198)
T ss_dssp             CCEEE-EESSSCCHHHHTSCHHHHTTTEEEESSCCGG------GCEEEEEEEEETTTEECCCCCCEEEEEECS-------
T ss_pred             cEEEE-EECCccccccccccccCCcccEEEECCCCHH------HCeEEEEEEECCCCCcccCCccEEEEEccc-------
Confidence            45899 88888764211111 1224568999999766      9999999999987 52 2 1 244555431       


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ...|.+...+  ...+.+|+++.|.|.+.+. .|.++|+
T Consensus        99 ~~~p~i~~~~--~~~v~~G~~v~L~C~~~~~-~~~v~W~  134 (198)
T 1ugn_A           99 YIKPTLSAQP--SPVVNSGGNVTLQCDSQVA-FDGFILC  134 (198)
T ss_dssp             SCCCEEEEES--CSEEETTCCEEEEEECSSC-CSEEEEE
T ss_pred             ccCCccccCC--ccccCCCCcEEEEEecCCC-CcEEEEE
Confidence            1115554443  2467889999999999998 7899996

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.40  E-value=1.2e-13  Score=88.72  Aligned_cols=98  Identities=18%  Similarity=0.332  Sum_probs=68.0

Q ss_pred             cEEEEEccCCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~   78 (116)
                      |.|+| +++|..+..  ....+....++.|.|.++..+      |+|.|+|.+.|..|.... ..+.+..        .+
T Consensus        36 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~v~v~~--------~~  100 (315)
T 1itb_B           36 GTITW-YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE------DSGHYYCVVRNSSYCLRIKISAKFVE--------NE  100 (315)
T ss_dssp             SCCCE-ECTTSCSCSCCCTTSSSEECSSBEECTTCCGG------GCSCCEECCCSSSCCCCEECCCEEEC--------CC
T ss_pred             ceEEE-EeCCCcCccccccCCcEeccCCeEEECCCChh------hCEEEEEEEeCCceEEEEEEEEEEeC--------CC
Confidence            67899 788764422  223455566779999999766      999999999999876553 2222221        11


Q ss_pred             CCceEecC--CCeEEEeCCCcEEEEeee------cCcCCceeEEe
Q psy11568         79 GPLFRIEP--PYRFEFSNESGGRLDCAA------QGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~--~~~~~~~~g~~~~l~C~~------~g~P~p~i~W~  115 (116)
                       |.+...+  .....+..|+++.|.|.+      .|.|.|.++|+
T Consensus       101 -p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~  144 (315)
T 1itb_B          101 -PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY  144 (315)
T ss_dssp             -TTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEE
T ss_pred             -CCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEE
Confidence             4332222  134567889999999998      89999999997

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.40  E-value=2.4e-12  Score=81.80  Aligned_cols=87  Identities=15%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCce
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLF   82 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~   82 (116)
                      .|+| +++|..+.     .....++.|.|.++..+      |+|.|+|.+.|  |......|.|..+          |..
T Consensus        39 ~i~W-~~~~~~~~-----~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n--g~~~~~~l~V~~~----------~~~   94 (290)
T 2o26_X           39 FVRW-TFKTYFNE-----MVENKKNEWIQEKAEAT------RTGTYTCSNSN--GLTSSIYVFVRDP----------AKL   94 (290)
T ss_dssp             EEEE-EEECSSSC-----EEEECSSEEEETTCCGG------GCEEEEEEESS--SCEEEEEEEEECS----------SCC
T ss_pred             cEEE-ecCCccee-----eecCCCceEEEeccCHH------hCeEEEEEeeC--CccEEEEEEEeCC----------Ccc
Confidence            5789 77777651     11223468999999766      99999999999  5533455555543          332


Q ss_pred             EecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568         83 RIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~  115 (116)
                      ...+ ....+.+|+.+.|.|.+.+ |. |.++|+
T Consensus        95 ~~~~-~~~~~~~g~~v~l~C~~~~-p~~~~v~W~  126 (290)
T 2o26_X           95 FLVG-LPLFGKEDSDALVRCPLTD-PQVSQYSLI  126 (290)
T ss_dssp             BCCC-CCEEEETTSCEEECCCBSC-CSCEEEEEE
T ss_pred             cccc-cceEEecCCeEEEeCcCCC-CCCceEEEE
Confidence            2333 5677889999999999996 87 999994

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.40  E-value=9.3e-13  Score=84.94  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=54.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+          |.+...+.....+..|+++.|.|.+.|
T Consensus       195 ~L~i~~~~~~------d~G~Y~C~a~n~~~~~~~~~~l~V~~~----------P~~~~~~~~~~~~~~g~~~~l~C~~~g  258 (331)
T 3u83_A          195 RYRLVPSREA------HQQSLACIVNYHMDRFKESLTLNVQYE----------PEVTIEGFDGNWYLQRMDVKLTCKADA  258 (331)
T ss_dssp             EEEECCCGGG------TTCEEEEEEEETTEEEEEEEECCEEEE----------EEEEEECCCSCCBTTCCCEEEEEEEEE
T ss_pred             EEEEEecccc------CCCEEEEEEecCCCcceeeEEEEEecC----------CeEEEecCCCceEeCCCeEEEEEeCcC
Confidence            5777777655      999999999999876553 44545443          555444434555778999999999999


Q ss_pred             cCCce-eEEe
Q psy11568        107 SPTPK-IEWL  115 (116)
Q Consensus       107 ~P~p~-i~W~  115 (116)
                      .|.|. ++|+
T Consensus       259 ~p~p~~i~W~  268 (331)
T 3u83_A          259 NPPATEYHWT  268 (331)
T ss_dssp             ESCCCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            99998 9997

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.40  E-value=1.5e-12  Score=72.22  Aligned_cols=61  Identities=26%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|+| ++||+++....+.+....++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        42 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           42 PPVVVW-EKGGQQLAASERLSFPADGAEHGLLLTAALPT------DAGVYVCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             CCEEEE-EETTEECCCCSSEECCEETTEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEE-EECcccccceeeEEEeecCceEEEEEecCChh------hCEEEEEEEEECCCEEEEEEEEEEEc
Confidence            478999 99999987544333333333  6999999766      999999999999998774 5555543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.40  E-value=2e-12  Score=77.62  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc-eEE--EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILS--RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-~~~--~~~~v~~~~~~~~~~~~   78 (116)
                      |.+.| +++|..        ....++.|.|.++..+      |+|.|+|.+.|..|. ..+  ..|.|...       ..
T Consensus        36 ~~~~W-~k~g~~--------~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~-------~~   93 (184)
T 2gi7_A           36 DLYRL-EKLSSS--------RYQDQAVLFIPAMKRS------LAGRYRCSYQNGSLWSLPSDQLELVATGV-------FA   93 (184)
T ss_dssp             SEEEE-EETTTC--------CEESSSEEEESSCCGG------GCEEEEEEEEETTEEBCCCCCEEEEEESS-------SC
T ss_pred             CEEEE-EECCcc--------ccCcccEEEECcCChh------hCceEEEEEEcCCCccCCCCCEEEEecCc-------CC
Confidence            67899 777754        1234568999999766      999999999998763 222  44444321       11


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .|.+...+  ...+.+|+++.|.|.+.+.| +.+.|+
T Consensus        94 ~p~i~~~p--~~~v~~G~~v~l~C~~~~~~-~~~~w~  127 (184)
T 2gi7_A           94 KPSLSAQP--GPAVSSGGDVTLQCQTRYGF-DQFALY  127 (184)
T ss_dssp             CCEEEEEC--CCSSCCTTCEEEEEECSSCC-CEEEEE
T ss_pred             CCEEEeCC--CceecCCCcEEEEEEcCCCC-cEEEEE
Confidence            25555554  23456899999999987655 688996

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.40  E-value=2.7e-12  Score=77.61  Aligned_cols=95  Identities=19%  Similarity=0.371  Sum_probs=61.3

Q ss_pred             cEEEEEccCCeeeecc--------c--cceEEe---eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE------EE
Q psy11568          2 YVLLWLIRDNTVIAYV--------K--DLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL------SR   62 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~--------~--~~~~~~---~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~------~~   62 (116)
                      |.+.| .+++..+...        .  ..|..+   .+..|.|.++..+      |+|.|.|.+.|..|...      ..
T Consensus        28 ~~~~W-~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~~~g~~~~~~~~~~~  100 (201)
T 1dr9_A           28 TRIYW-QKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS------DEGTYECVVLKYEKDAFKREHLAEV  100 (201)
T ss_dssp             CEEEE-EETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGG------GCEEEEEEEEECCTTSCEEEEEEEE
T ss_pred             cEEEE-EeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccch------hCeEEEEEEEcCCCCccccccccEE
Confidence            57899 8888876310        0  112222   2358999999766      99999999999876542      23


Q ss_pred             EEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         63 FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        63 ~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      .|.|...       ...|.+...     ....|+.+.|.|.+. |.|.|.++|+
T Consensus       101 ~l~V~~~-------~~~p~~~~~-----~~~~g~~~~l~C~~~~g~P~p~i~W~  142 (201)
T 1dr9_A          101 TLSVKAD-------FPTPSISDF-----EIPTSNIRRIICSTSGGFPEPHLSWL  142 (201)
T ss_dssp             EEEEECC-------CCCCEEEEE-----ECSSTTEEEEEEEEEEESSCEEEEEE
T ss_pred             EEEEcCC-------CCCCceEec-----cCCCCCeEEEEEecCCccCCCEEEEE
Confidence            3333332       001333221     113488999999995 9999999997

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.39  E-value=3.6e-12  Score=91.00  Aligned_cols=97  Identities=20%  Similarity=0.291  Sum_probs=69.5

Q ss_pred             CcEEEEEccCCeee--ec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeee
Q psy11568          1 MYVLLWLIRDNTVI--AY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLL   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~--~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~   75 (116)
                      .|.+.| ++++...  ..  ....+....++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+      
T Consensus       277 ~p~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~~------  343 (816)
T 3dmk_A          277 VPVFRW-YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE------DSGKYLCVVNNSVGGESVETVLTVTAP------  343 (816)
T ss_dssp             CCEEEE-EEECTTSSCEEECCCSSSEEEETTEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEECEE------
T ss_pred             CCeEEE-EeCCCCCccCcceecCCceEeccceEEECCCCHh------HCEEEEEEEEcCCCceEEEEEEEEcCC------
Confidence            378999 5533211  11  112234455679999999766      999999999999886653 44555443      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                          +.+...+ ....+..|+.+.|.|.+.|.|.|.++|+
T Consensus       344 ----~~~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~v~W~  378 (816)
T 3dmk_A          344 ----LSAKIDP-PTQTVDFGRPAVFTCQYTGNPIKTVSWM  378 (816)
T ss_dssp             ----EEEEEES-SEEECCTTSCEEEEEEEEEECCCEEEEE
T ss_pred             ----CceeeCC-CceEecCCCCEEEEEEEeccCCCEEEEE
Confidence                4444454 6677889999999999999999999997

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.39  E-value=1.5e-11  Score=74.48  Aligned_cols=74  Identities=23%  Similarity=0.366  Sum_probs=52.9

Q ss_pred             eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      .++.|.|.++..+      |+|.|+|.+.+..+....  ..|.|..+       ...|.+...+ ..  +..|+++.|.|
T Consensus        69 ~~~~L~i~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~p~i~~~~-~~--~~~g~~v~l~C  132 (208)
T 3r4d_A           69 SNGSLLFQMITMK------DMGVYTLDMTDENYRRTQATVRFHVHQP-------VTQPFLQVTN-TT--VKELDSVTLTC  132 (208)
T ss_dssp             TTSCEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEEEECC-------CCCCEEEESC-SS--CCTTCCEEEEE
T ss_pred             cCCeEEEcccccc------CCeEEEEEEEcccCceeEEEEEEEeccC-------CCCCEEecCC-ce--EeeCCCEEEEE
Confidence            3468999999766      999999999998643333  34444432       1124554444 33  78899999999


Q ss_pred             eecCcCCceeEEe
Q psy11568        103 AAQGSPTPKIEWL  115 (116)
Q Consensus       103 ~~~g~P~p~i~W~  115 (116)
                      .+.+.| |.++|+
T Consensus       133 ~~~~~p-p~i~W~  144 (208)
T 3r4d_A          133 LSNDIG-ANIQWL  144 (208)
T ss_dssp             ECSCTT-CEEEEE
T ss_pred             ECCCCC-CceEEE
Confidence            999976 899997

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.38  E-value=2.5e-12  Score=87.77  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=62.4

Q ss_pred             c-EEEEEccCCeeeeccccceEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEee
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVS   73 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~   73 (116)
                      | .|+| +++|..+......+....++      .|.|.++..+      | |.|+|.|.|..|.... ..+.+...    
T Consensus       250 p~~v~W-~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d-G~Y~C~a~n~~g~~~~~~~l~v~~~----  317 (523)
T 2rcj_C          250 PVTVSW-NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSNTKVDKRVEPLSL----  317 (523)
T ss_pred             CeEEEE-ecCCcccceEeCCcEecCCCcEEEEEEEEechhhcC------C-ceEEEEEEeCCCCcceEEecCCCcC----
Confidence            5 7999 88887754211111222222      6899998655      9 9999999999987543 33322221    


Q ss_pred             eeccCCCceEecCCCeEE-EeCCCcEEEEeeecCcCC----ceeEEeC
Q psy11568         74 LLDIQGPLFRIEPPYRFE-FSNESGGRLDCAAQGSPT----PKIEWLI  116 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~g~P~----p~i~W~~  116 (116)
                            |.+...++.... +.+|+.+.|.|.+.|.|+    +.++|+.
T Consensus       318 ------P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k  359 (523)
T 2rcj_C          318 ------PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYV  359 (523)
T ss_pred             ------ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEE
Confidence                  443333323333 678999999999999653    5899973

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.37  E-value=6.5e-12  Score=78.43  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGP   80 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p   80 (116)
                      |.++| +++|..+..      ...++.|.|.++..+      |+|.|+|.+.|..+.... ..|.|...       .+.|
T Consensus       113 ~~v~W-~~~g~~~~~------~~~~~~l~i~~~~~~------d~G~Y~C~~~n~~~~~~~~~~l~V~~~-------~~~p  172 (262)
T 3rjd_A          113 YNVLY-YRNGKAFKF------FHWNSNLTILKTNIS------HNGTYHCSGMGKHRYTSAGISVTVKEL-------FPAP  172 (262)
T ss_dssp             EEEEE-EETTEEEEE------EEECCCEEESSCCGG------GCEEEEEEEESSSEEEEECEEEEEECS-------SCCC
T ss_pred             ceEEE-EECCccccc------cCCCCeEEEEECChh------hCEEEEEEEeCCCCccccceEEEeccC-------CCCC
Confidence            68999 889887752      223568999999766      999999999999865543 45555532       0124


Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecCcCC-ceeEE
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEW  114 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W  114 (116)
                      .+...+  ...+..|+.+.|.|.+.+.|. |.+.|
T Consensus       173 ~~~~~~--~~~~~~g~~~~l~C~~~~~p~~p~~~~  205 (262)
T 3rjd_A          173 VLNASV--TSPLLEGNLVTLSCETKLLLQRPGLQL  205 (262)
T ss_dssp             EEEESS--CSSEETTCCEEEEEECCCCCC-----E
T ss_pred             eEeecC--ceeecCCCeEEEEeEcccCCCCCCccE
Confidence            554443  345678999999999999986 65443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.37  E-value=3.1e-12  Score=87.37  Aligned_cols=99  Identities=12%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCCceEE--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~   77 (116)
                      |.|+|+++||..+..  +.++. ..++.|.|.++..+      |+| .|+|.+.|..+...+  ..|.|...     ...
T Consensus       144 ~~v~W~~~~g~~l~~--~~~~~~~~~~~L~i~~~~~~------d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~-----~~~  210 (524)
T 2ec8_A          144 TNYSLKGCQGKPLPK--DLRFIPDPKAGIMIKSVKRA------YHRLCLHCSVDQEGKSVLSEKFILKVRPA-----FKA  210 (524)
T ss_dssp             SCEEEECSSSCCCCS--SCEEEEETTTEEEEESCCGG------GTTCEEEEEEC----CCCCCCEECCEECC-----CCS
T ss_pred             ceEEEEccCCcCcCC--CCceeECCCccEEEeccchh------hCCceEEEEEEECCceEEEEEEEEEEEeC-----CCC
Confidence            789995558888763  22333 34668999999766      999 999999998766543  44444310     011


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCce-eEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPK-IEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~-i~W~  115 (116)
                       .|.+...+ ....+.+|+++.|.|.+.|.|.|. ++|+
T Consensus       211 -~p~i~~~~-~~~~v~~G~~v~L~C~~~g~p~p~~i~W~  247 (524)
T 2ec8_A          211 -VPVVSVSK-ASYLLREGEEFTVTCTIKDVSSSVYSTWK  247 (524)
T ss_dssp             -CCEEECSC-SEEEEETTSCEEEEEEEEESSTTCEEEEE
T ss_pred             -CCcEEecC-CcceEEcCCcEEEEEEEecCCCcEEEEEE
Confidence             26666665 677899999999999999999987 9997

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.37  E-value=1e-11  Score=74.01  Aligned_cols=90  Identities=19%  Similarity=0.318  Sum_probs=60.0

Q ss_pred             cEEEEEccCCeeeeccc----------cceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeC
Q psy11568          2 YVLLWLIRDNTVIAYVK----------DLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAG   69 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~----------~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~   69 (116)
                      |.|.| ++++..+....          ..|..+  .+++|.|.+++.+      |+|.|.|.+.|..| .....|.|..+
T Consensus        24 ~~i~W-~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~------DsG~Y~C~~~n~~~-~~~~~L~V~~~   95 (171)
T 1ccz_A           24 KEVLW-KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS------DEDEYEMESPNITD-TMKFFLYVLEM   95 (171)
T ss_dssp             SCEEE-EETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGG------GCEEEEEECTTCCS-CEEEEEEEECC
T ss_pred             ceEEE-EeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChh------hCceEEEEEeCCCC-cEEEEEEEECc
Confidence            67999 66665443211          113333  4578999999766      99999999999887 33455655543


Q ss_pred             cEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         70 SVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        70 ~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                             ...|.+....         ....|.|.+.+.|.|.++|+
T Consensus        96 -------~~~p~i~~~~---------~~~~L~C~~~~~p~p~i~W~  125 (171)
T 1ccz_A           96 -------VSKPMIYWEC---------SNATLTCEVLEGTDVELKLY  125 (171)
T ss_dssp             -------CCCCEEEEET---------TTTEEEEECSSCSSCEEEEE
T ss_pred             -------CCCCEEEEec---------CCcEEEEEeCCCCCcEEEEE
Confidence                   0114443322         11379999999999999997

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.37  E-value=3.3e-12  Score=78.03  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=57.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe------CcEe--
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA------GSVV--   72 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~------~~~~--   72 (116)
                      .|.|+| ++||..+...     ...++.|.|.++..+      |+|.|+|.+.+..+..  ..|.+..      ....  
T Consensus        29 ~~~i~W-~k~g~~l~~~-----~~~~~~L~i~~v~~~------DsG~Y~C~~~~~~s~~--~~v~v~~~~~~~~~~~~~~   94 (204)
T 1sy6_A           29 AKNITW-FKDGKMIGFL-----TEDKKKWNLGSNAKD------PRGMYQCKGSQNKSKP--LQVYYRMGSADDAKKDAAK   94 (204)
T ss_dssp             SSEEEE-EETTEEEEEE-----ESSCCCEEEEEGGGC------CEEEEEEESSSSCCCC--EEEEEEC------------
T ss_pred             CCEEEE-EECCEECCCC-----CCCCCeEEeCCCCcC------CCEEEEEEecCCCCee--EEEEEEEeccccccccccc
Confidence            378999 8999887531     123568999999766      9999999986643322  2333320      0000  


Q ss_pred             ------e-------eeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         73 ------S-------LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        73 ------~-------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                            .       ......+.+...+ . ....+|+++.|.|.  |.|.|.++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~v~~~G~~v~L~C~--g~p~p~i~W~  146 (204)
T 1sy6_A           95 KDDAKKDDAKKDGSDGNEEMGGITQTP-Y-KVSISGTTVILTCP--QYPGSEILWQ  146 (204)
T ss_dssp             ------------------------CCC-C-EEEEETTEEEEECS--CCCSSCEEEE
T ss_pred             cccccccccccccccccccccceecCC-c-eeeecCCcEEEEcC--CCCCCceEEE
Confidence                  0       0000002222222 2 23337999999999  8899999997

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.37  E-value=6.8e-12  Score=74.58  Aligned_cols=84  Identities=21%  Similarity=0.361  Sum_probs=59.9

Q ss_pred             EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceE
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFR   83 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~   83 (116)
                      +.| +++|..+..        .++.|.|.++..+      |+|.|+|.+.|..+.. ...+.|..+          +...
T Consensus        40 ~~W-~~~~~~~~~--------~~~~L~i~~~~~~------d~G~Y~C~~~n~~~s~-~~~l~V~~~----------~~~~   93 (175)
T 1fnl_A           40 TQW-FHNESLISS--------QASSYFIDAATVN------DSGEYRCQTNLSTLSD-PVQLEVHIG----------WLLL   93 (175)
T ss_dssp             CEE-EETTEEEES--------SCSEEEESSCCGG------GCEEEEEECSSSCCCC-CEEEEEECS----------SEEE
T ss_pred             eEE-EECCEEccC--------CceEEEEeCCCcc------cCEEEEEEeeCCcccc-cEEEEEeCC----------Ccee
Confidence            679 888877652        3558999999766      9999999999865432 233444432          3333


Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~  115 (116)
                      ..+  ...+.+|+.+.|.|.+.+.|+ +.+.|+
T Consensus        94 ~~~--~~~~~~g~~~~l~C~~~~~~~~~~~~W~  124 (175)
T 1fnl_A           94 QAP--RWVFKEEDPIHLRCHSWKNTALHKVTYL  124 (175)
T ss_dssp             ECS--CSEEETTCCEEEEEEECTTCCCEEEEEE
T ss_pred             eCC--CceecCCCCEEEEEEcCCCCCceEEEEE
Confidence            333  345778999999999998865 499997

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.36  E-value=1.4e-11  Score=76.20  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE------EEEEEEEeCcEeeeec---cCCCceEecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL------SRFVHVKAGSVVSLLD---IQGPLFRIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~------~~~~~v~~~~~~~~~~---~~~p~~~~~~~~~~~~~~g~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.|..|...      ...|.|..... ....   ...+.+...+ ....+.+|+++
T Consensus        74 ~L~I~~v~~~------DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~-~~~p~~~~~~~~v~~~p-~~~~v~~G~~v  145 (238)
T 2p1y_A           74 SLILELATPS------QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSAD-DAKKDAAKKDGQVRQSP-QSLTVWEGETA  145 (238)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEC------CEEECCCEEEEEECCCH-HHHHHHHHHHTCCEEEC-SEEEEETTSCE
T ss_pred             EEEEecCCcc------cCeeEEEEEEeCCCccccceeCCCeEEEEeccCC-CCcCCcccceeeEEccC-ceEEEeCCCeE
Confidence            7999999766      99999999999865211      12344433200 0000   0001444444 67788999999


Q ss_pred             EEEeeecCcCCceeEEe
Q psy11568         99 RLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        99 ~l~C~~~g~P~p~i~W~  115 (116)
                      .|.|.+.+.|.|.+.|+
T Consensus       146 ~L~C~~~~~p~~~i~W~  162 (238)
T 2p1y_A          146 ILNCSYENSAFDYFPWY  162 (238)
T ss_dssp             EEEEECCCTTCCEEEEE
T ss_pred             EEEEEEecCCCCcEEEE
Confidence            99999999999999997

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.36  E-value=4e-12  Score=69.59  Aligned_cols=60  Identities=15%  Similarity=0.203  Sum_probs=44.7

Q ss_pred             CcEEEEEccCCeeeeccccceEE--eeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--LSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||+++......++.  ..++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|.
T Consensus        34 ~p~v~W-~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           34 TPEVTW-SCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ------DGGLYTLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             CCEEEE-EETTEECCTTGGGTEEEEECSSEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEE-EECceEeeeeccceeeeecccceEEEEEcCCCcc------CCEEEEEEEEECCCEEEEEEEEEEE
Confidence            478999 9999998754433332  2232  6999999766      999999999999998764 555554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.36  E-value=4.3e-12  Score=76.37  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=62.9

Q ss_pred             cEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-E--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-S--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~--~~~~v~~~~~~~~~~~   77 (116)
                      +.+.| +++|..+...... .....++.|.|.++.++      |+|.|+|.+.|..+... +  ..|.|...       .
T Consensus        32 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~-------~   97 (188)
T 1oll_A           32 VEYQL-HFEGSLFAVDRPKPPERINKVKFYIPDMNSR------MAGQYSCIYRVGELWSEPSNLLDLVVTEM-------Y   97 (188)
T ss_dssp             CEEEE-EETTEEEEEECCSSCTTCCEEEEEESSCCGG------GCEEEEEEEEETTEECCCCCCEEEEEESC-------S
T ss_pred             CEEEE-EECCCcccccccccCCCcceeEEEeCcCCcc------cCeEEEEEecCCCCCCCCCCceEEEeccc-------C
Confidence            56889 8888876521110 11123347999999766      99999999998754321 2  44444421       1


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..|.+...+  ...+.+|+++.|.|.+.+ +.+.+.|+
T Consensus        98 ~~p~i~~~p--~~~v~~G~~v~L~C~~~~-~~~~~~w~  132 (188)
T 1oll_A           98 DTPTLSVHP--GPEVISGEKVTFYCRLDT-ATSMFLLL  132 (188)
T ss_dssp             CCCEEEEES--CSEEETTCEEEEEEECSS-SCSEEEEE
T ss_pred             CCCeEEECC--CCccccCCEEEEEEEcCC-CCCEEEEE
Confidence            125665544  235788999999999876 45789996

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.36  E-value=3.7e-12  Score=78.30  Aligned_cols=76  Identities=21%  Similarity=0.338  Sum_probs=55.1

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcE-EEEe
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG-RLDC  102 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-~l~C  102 (116)
                      ++.|.|.++..+      |+|.|+|.+.+.. +.... ..|.|....      . .|.+...+ ....+..|+.+ .|.|
T Consensus        76 ~~~L~i~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p------~-~~~~~~~~-~~~~~~~g~~~~~l~C  141 (231)
T 2pet_A           76 QGRLVLAEAQVG------DERDYVCVVRAGAAGTAEATARLNVFAKP------E-ATEVSPNK-GTLSVMEDSAQEIATC  141 (231)
T ss_dssp             TCCEEESSCCGG------GCEEEEEEEECGGGCEEEEEEEEEEEBCC------C-CCEEEECC-SSCCTTCCSEEEEEEE
T ss_pred             CceEEEcccCcc------cCceEEEEEEecCCCceEEEEEEEEEecC------C-CcEEecCC-cceeecCCCceEEEEE
Confidence            457999999766      9999999999987 54442 455555420      1 14444443 55556678888 9999


Q ss_pred             ee-cCcCCceeEEe
Q psy11568        103 AA-QGSPTPKIEWL  115 (116)
Q Consensus       103 ~~-~g~P~p~i~W~  115 (116)
                      .+ .|.|.|.++|+
T Consensus       142 ~~~~~~p~p~i~W~  155 (231)
T 2pet_A          142 NSRNGNPAPKITWY  155 (231)
T ss_dssp             EEEEEBSCCEEEEE
T ss_pred             EeECcccCCEEEEE
Confidence            99 89999999997

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.35  E-value=3.4e-14  Score=91.01  Aligned_cols=96  Identities=15%  Similarity=0.206  Sum_probs=59.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGP   80 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p   80 (116)
                      |.++| +++|..+......+.......|.|.++..+      |+|.|+|.+.|..|.... ..|.+...          |
T Consensus        37 ~~v~W-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~g~~~~~~~l~v~~~----------~   99 (317)
T 2y25_A           37 THIVW-YKDEREISVDEKHDFKDGICTLLITEFSKK------DAGIYEVILKDDRGKDKSRLKLVDEAF----------K   99 (317)
T ss_dssp             CEEEE-EETTEEECCSCC-----CCEEEEETTCCST------TCSCEEEEEESSSCEEEEEECCSTHHH----------H
T ss_pred             CEEEE-EECCeEcCCCCcEEEECCeEEEEEccCCcc------cCeEEEEEEECCCCcEEEEEEEEEecC----------c
Confidence            78999 899998874333222223348999999766      999999999999886543 21111110          2


Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeecC----------cCCceeEEe
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQG----------SPTPKIEWL  115 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~g----------~P~p~i~W~  115 (116)
                      .+...+ ....+..|+.+.|.|.+.+          .|.|.++|+
T Consensus       100 ~~~~~~-~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~  143 (317)
T 2y25_A          100 ELMMEV-CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWS  143 (317)
T ss_dssp             HHHHHH-HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEE
T ss_pred             cccccC-CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEE
Confidence            221111 2223345666666666666          799999997

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.34  E-value=2.1e-11  Score=76.31  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=55.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcE------eeeeccCCCceEecCCCeEEEeCCCcEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSV------VSLLDIQGPLFRIEPPYRFEFSNESGGR   99 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~------~~~~~~~~p~~~~~~~~~~~~~~g~~~~   99 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|.....      .... ...+.+...+ ....+.+|+++.
T Consensus        81 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~-~~~~~v~~~p-~~~~v~~G~~v~  152 (253)
T 3uzq_A           81 YLHLSSLTSG------DTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGG-GSELVMTQTP-ASLAVSLGQRAT  152 (253)
T ss_dssp             EEEECSCCGG------GCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC----------CCEEEEC-SEEEECTTSCEE
T ss_pred             EEEeCCCCcc------cCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCC-cccceEECcC-CeEEEeCCCCEE
Confidence            3999999766      999999999997655432  3444442000      0000 0114555555 778899999999


Q ss_pred             EEeeecCcCCc----eeEEe
Q psy11568        100 LDCAAQGSPTP----KIEWL  115 (116)
Q Consensus       100 l~C~~~g~P~p----~i~W~  115 (116)
                      |.|.+.+.|.|    .+.|+
T Consensus       153 L~C~~~~~~~~~~~~~v~W~  172 (253)
T 3uzq_A          153 ISCRASENVDRYGNSFMHWY  172 (253)
T ss_dssp             EEEEESSCCEETTEECEEEE
T ss_pred             EEEEecCccccCCCcEEEEE
Confidence            99999999887    99997

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.34  E-value=1.6e-11  Score=78.40  Aligned_cols=104  Identities=13%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEee--CC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEee---
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS--NG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVS---   73 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~---   73 (116)
                      .|.++| +++|.++...........  .+  .|.|.++..+      |+|.|+|.+.+..+... ..+.+.......   
T Consensus       137 ~~~v~W-~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~-~~~~~~~~~~~~~~~  208 (312)
T 2y23_A          137 NAKVNY-IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE------DEGTYTFQLQDGKATNH-STVVLVGDVFKKLQK  208 (312)
T ss_dssp             SCEEEE-EETTEEECSSSSCEEEEETTTTEEEEEESCCCGG------GCEEEEEEEESSSCEEE-EEEEECTHHHHHHHH
T ss_pred             CCEEEE-EECCEECeeCCcEEEEEccCCCEEEEEEccCCcc------cCEeEEEEEEeCCceEE-EEEEEcchhhhhhcc
Confidence            378999 999998875433333322  22  3999999766      99999999987653332 222221000000   


Q ss_pred             ---------eeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         74 ---------LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        74 ---------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                               ....+ |.+....  ...+..|+.+.|.|.+.|.|.| .++|+
T Consensus       209 ~~~~~~~~~~~~~~-p~~~~~~--~~~v~~G~~~~l~C~~~~~p~~~~v~W~  257 (312)
T 2y23_A          209 EAEFQRQEWIRKQG-PHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWY  257 (312)
T ss_dssp             HHHHHHHHHHHHHS-SEEEEEE--EEEEETTTEEEEEEEEESCCSSCEEEEE
T ss_pred             cccccccchhhccC-Cceeecc--eEEEeCCCEEEEEEEEcCCCCCCEEEEe
Confidence                     00111 5554332  3678899999999999999988 99997

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.34  E-value=1.2e-11  Score=73.89  Aligned_cols=65  Identities=11%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS  107 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~  107 (116)
                      .|.|.++..+      |+|.|+|.+.|..+   ...+.|...             .. + ....+.+|+++.|.|.+.+.
T Consensus        69 ~L~i~~v~~~------D~G~Y~C~~~~~~~---~~~l~V~~~-------------~~-~-~~~~v~~g~~~~l~C~~~~~  124 (184)
T 2ny1_B           69 PLIIKNLKIE------DSDTYICEVEDQKE---EVQLLVFGL-------------TA-N-SDTHLLQGQSLTLTLESPPG  124 (184)
T ss_dssp             CEEECSCCGG------GCEEEEEEETTEEE---EEEEEEEEE-------------EE-S-SCSEEETTCCEEEEEECCTT
T ss_pred             EEEEecCCHH------HCEEEEEEEEcCCC---cEEEEEEEe-------------cC-C-CCceeecCCCEEEEEEcCCC
Confidence            5999999766      99999999998754   222322211             01 1 23366789999999999999


Q ss_pred             CCceeEEeC
Q psy11568        108 PTPKIEWLI  116 (116)
Q Consensus       108 P~p~i~W~~  116 (116)
                      |.|.++|+.
T Consensus       125 p~~~v~W~~  133 (184)
T 2ny1_B          125 SSPSVQCRS  133 (184)
T ss_dssp             CCCEEEEEC
T ss_pred             CCCEEEEEe
Confidence            999999973

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.33  E-value=3.7e-12  Score=72.52  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEe---------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL---------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~---------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+| ++||+++..........         ..+.|.|.++...      |+|.|+|.|.|..|...+ ..|.+
T Consensus        29 ~P~I~W-~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~YtC~A~N~~G~~~~t~~l~v   97 (126)
T 1he7_A           29 APSLRW-LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV------NNGNYTLLAANPFGQASASIMAAF   97 (126)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGG------GCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCeEEE-EECCEECCCCCceeEEEeeccccccccceEEEECcCCCC------CCEEEEEEEEECCCeEEEEEEEEE
Confidence            489999 99999997543322221         1247999999665      999999999999998764 43433

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.33  E-value=7e-12  Score=76.11  Aligned_cols=97  Identities=12%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             cEEEEEccCCeeeeccccc-eEE--eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC----ceEE--EEEEEEeCcEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIA--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG----VILS--RFVHVKAGSVV   72 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~--~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g----~~~~--~~~~v~~~~~~   72 (116)
                      |.+.| +|+|..+...... +..  ..++.|.|.++..+      |+|.|+|.+.|...    ...+  ..|.|...   
T Consensus        36 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~---  105 (201)
T 1nkr_A           36 EHFLL-HREGMFNDTLRLIGEHHDGVSKANFSISRMTQD------LAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL---  105 (201)
T ss_dssp             SEEEE-EEESSSCEEEEEECEEETTEEEEEEEESSCCGG------GCEEEEEEEEBTTBTTCCCCCCCCEEEEEECS---
T ss_pred             CEEEE-EECCCcCCcceeeeecCCCCceEEEEeccCCcc------cCeEEEEeEecCCCCccccCCCCCEEEEeecc---
Confidence            67999 8888765421110 011  12457999999766      99999999987531    1222  34555432   


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                          ...|.+...+ . ..+.+|+++.|.|.+.+ |.+.+.|+
T Consensus       106 ----~~~p~i~~~p-~-~~v~~G~~v~L~C~~~~-~~~~~~w~  141 (201)
T 1nkr_A          106 ----YEKPSLSAQP-G-PTVLAGENVTLSCSSRS-SYDMYHLS  141 (201)
T ss_dssp             ----SCCCEEEEES-C-SEECTTCEEEEEEEESS-CCSEEEEE
T ss_pred             ----CCCCceecCC-C-CccCCCCeEEEEEeCCC-CCceEEEE
Confidence                0126666555 3 36789999999999986 66889996

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.33  E-value=1.5e-11  Score=77.37  Aligned_cols=71  Identities=18%  Similarity=0.313  Sum_probs=53.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc----eEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV----ILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~----~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.|..|.    ...  ..|.|...          |.+...+ ....+.+|+++.|.
T Consensus        80 ~L~I~~v~~~------DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~----------~~v~~~p-~~~~v~~G~~v~L~  142 (256)
T 1nqb_A           80 YMQLSSLTSE------DSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD----------IELTQTP-LSLPVSLGDQASIS  142 (256)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCTTSSSSCSEECCCEEEEECCC----------CCEEEEC-SEEEECTTCCEEEE
T ss_pred             EEEECcCChh------hCEEEEEEEeeccCccceeEEcCceeeeeccc----------ccEEecC-cEEEEecCCcEEEE
Confidence            7999999766      999999999998663    111  23333322          5555555 67788999999999


Q ss_pred             eeecCcCCc-----eeEEe
Q psy11568        102 CAAQGSPTP-----KIEWL  115 (116)
Q Consensus       102 C~~~g~P~p-----~i~W~  115 (116)
                      |.+.+.|.|     .++|+
T Consensus       143 C~~~~~~~~~~~~~~v~W~  161 (256)
T 1nqb_A          143 CRSSQSIVHSNGNTYLEWY  161 (256)
T ss_dssp             EEESSCCBCTTSCBCEEEE
T ss_pred             eEecCcccccccceEEEEE
Confidence            999999875     99997

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.33  E-value=3.3e-11  Score=75.02  Aligned_cols=80  Identities=18%  Similarity=0.275  Sum_probs=53.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-E--EEEEEEeCcE------eeeeccCCCceEecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-S--RFVHVKAGSV------VSLLDIQGPLFRIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~--~~~~v~~~~~------~~~~~~~~p~~~~~~~~~~~~~~g~~~   98 (116)
                      +|.|.++..+      |+|.|.|.+.|..+... .  ..|.|.....      +.... ..+.+...+ ....+.+|+++
T Consensus        82 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~v~~G~~v  153 (247)
T 2ghw_B           82 YLQMNSLRAE------DTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGG-SETTLTQSP-ATLSLSPGERA  153 (247)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETTEEEEECCCEEEEECSCC-------------CCCCEEEEC-SEEEECTTSCE
T ss_pred             EEEECcCCHH------HCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCC-cceEEEccC-CEEEecCCCcE
Confidence            6999999766      99999999999843221 1  2344432100      00000 113344444 67788999999


Q ss_pred             EEEeeecCcCCceeEEe
Q psy11568         99 RLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        99 ~l~C~~~g~P~p~i~W~  115 (116)
                      .|.|.+.+.|.|.++|+
T Consensus       154 ~L~C~~~~~~~~~v~W~  170 (247)
T 2ghw_B          154 TLSCRASQSVRSNLAWY  170 (247)
T ss_dssp             EEEEEESSCCTTCEEEE
T ss_pred             EEEEEeCCCccceEEEE
Confidence            99999999999999997

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.33  E-value=2.8e-12  Score=85.56  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             EEEEEccCCeeeeccccc--eEE-------eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEee
Q psy11568          3 VLLWLIRDNTVIAYVKDL--RIA-------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVS   73 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~--~~~-------~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~   73 (116)
                      .|+| ++||.++......  ...       ...+.|.|.++..+      |+|.|+|.|.|..+... ..+.+...    
T Consensus       149 ~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~-~~~~~~~~----  216 (438)
T 1qgc_4          149 NVKW-KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTSTSP-IVKSFNRN----  216 (438)
T ss_dssp             EEEE-EETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEEETTCSSC-EEEEEETT----
T ss_pred             EEEE-EECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccC------CCCeEEEEEEecccCCc-eecccccc----
Confidence            7999 8899987642000  000       11236889988665      99999999999987642 12222211    


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeeecCcC--CceeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSP--TPKIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P--~p~i~W~  115 (116)
                         . .+..+..+ ....+.+|+.+.|.|.+.|.|  .+.++|+
T Consensus       217 ---~-~~~~~~~~-~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~  255 (438)
T 1qgc_4          217 ---E-CEVMLVES-GGGLVKPGGSLKLSCTASGFIFNRCAMSWV  255 (438)
T ss_dssp             ---C--CCEEEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred             ---c-ceeEEecC-CceEEecCCcEEEEEEEcccccCCcEEEEE
Confidence               0 12333333 566788999999999999998  6799996

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.4e-11  Score=76.90  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCce
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLF   82 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~   82 (116)
                      .++| +++|..+..        .+..|.|.++..+      |+|.|+|.+.|..+... ..+.|..+          + +
T Consensus        33 ~~~W-~~~g~~~~~--------~~~~l~i~~~~~~------d~G~Y~C~~~~~~~s~~-~~l~v~~~----------~-~   85 (262)
T 3rjd_A           33 STQW-FLNGTATQT--------STPSYRITSASVN------DSGEYRCQRGLSGRSDP-IQLEIHRG----------W-L   85 (262)
T ss_dssp             CEEE-EETTEECSC--------CSSEEEESSCCGG------GCEEEEEEESSSCCCCC-EEEEEECS----------S-E
T ss_pred             eEEE-EECCEEeec--------cCCeEEEecCCcc------cCeEEEEEEecCCcccc-EEEEEecc----------c-e
Confidence            7999 889887752        2457899999766      99999999998765432 33333332          3 3


Q ss_pred             EecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         83 RIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      ...+ ....+.+|+.+.|.|.+ .+.|.+.++|+
T Consensus        86 ~~~~-~~~~~~~g~~v~l~C~~~~~~p~~~v~W~  118 (262)
T 3rjd_A           86 LLQV-SSRVFTEGEPLALRCHAWKDKLVYNVLYY  118 (262)
T ss_dssp             EEEE-SCSEEETTSCEEEEEEEGGGCCCEEEEEE
T ss_pred             EecC-CCeEEecCCeEEEEEEccCCCCCceEEEE
Confidence            3333 34467789999999999 77889999997

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.32  E-value=7.3e-12  Score=74.44  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCce
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLF   82 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~   82 (116)
                      .++| +++|..+..        .++.|.|.++..+      |+|.|+|.+.|..+... ..+.|..+          +..
T Consensus        36 ~i~W-~~~~~~~~~--------~~~~L~i~~v~~~------d~G~Y~C~~~~~~~s~~-~~l~V~~~----------~~~   89 (176)
T 1f2q_A           36 STKW-FHNGSLSEE--------TNSSLNIVNAKFE------DSGEYKCQHQQVNESEP-VYLEVFSD----------WLL   89 (176)
T ss_dssp             CCEE-EETTEECSC--------CSSEEEECSCCGG------GCEEEEEECTTSSCCCC-EEEEEECS----------SEE
T ss_pred             eEEE-EECCeECCC--------CceEEEEecccee------cCEEEEEEcCCcccccc-EEEEEeCc----------cee
Confidence            4889 888877652        3568999999766      99999999998765332 33444422          333


Q ss_pred             EecCCCeEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         83 RIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      ...+  ...+.+|+.+.|.|.+ .+.|.|.++|+
T Consensus        90 ~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~  121 (176)
T 1f2q_A           90 LQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYY  121 (176)
T ss_dssp             EEES--CSEEETTSCEEEEEEEGGGCCEEEEEEE
T ss_pred             ecCC--cceeeCCCCEEEEEEecCCCCceEEEEE
Confidence            3333  2466789999999999 46778899997

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.32  E-value=4.8e-12  Score=81.76  Aligned_cols=73  Identities=12%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE------EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL------SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL  100 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~------~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  100 (116)
                      ..|.|.++..+      |+|.|+|.+.|..+...      ...|.|...        +.+..+..+  ...+.+|+.+.|
T Consensus        74 ~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~--------p~~p~i~~~--~~~~~~g~~~~l  137 (327)
T 2wng_A           74 FSISISNITPA------DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAK--------PSAPVVSGP--AARATPQHTVSF  137 (327)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEESSTTCEEEEECCCEEEEEEBC--------CCCCEEECC--SSCBCTTCEEEE
T ss_pred             eEEEEccCccc------cCeEEEEEeecCCCcceeEeecCcEEEEEEec--------CCCceeecc--ccccCCCCEEEE
Confidence            47999999766      99999999999866421      134444432        112233333  245678999999


Q ss_pred             EeeecCcCCc--eeEEe
Q psy11568        101 DCAAQGSPTP--KIEWL  115 (116)
Q Consensus       101 ~C~~~g~P~p--~i~W~  115 (116)
                      .|.+.|.|+|  .++|+
T Consensus       138 ~C~~~g~p~~~~~v~W~  154 (327)
T 2wng_A          138 TCESHGFSPRDITLKWF  154 (327)
T ss_dssp             EEEEEEEBSSCCEEEEE
T ss_pred             EEEEeCccCCCcEEEEE
Confidence            9999999876  89997

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.32  E-value=1.8e-11  Score=76.90  Aligned_cols=69  Identities=17%  Similarity=0.439  Sum_probs=51.3

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee-
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-  104 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-  104 (116)
                      ..|.|.++..+      |+|.|+|.+.|..+... ...+.+...          +    ..+....+..|+++.|.|.+ 
T Consensus        84 ~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~l~V~----------~----~~p~~~~v~~G~~v~L~C~~~  143 (268)
T 3mj6_A           84 GSLLLQDVQKA------DEGIYTCEIRLKNESMVMKKPVELWVL----------P----EEPRDLRVRVGDTTQMRCSIQ  143 (268)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEETTCCCEEEEEEEEEEE----------C----CCCSEEEEETTCCEEECCBCE
T ss_pred             EEEEECCCCHh------HCEEEEEEEEecCCcceEEEEEEEEEe----------c----cCCCccccccCCcEEEEEEec
Confidence            57999999766      99999999999765443 233322221          1    11256778899999999999 


Q ss_pred             --cCcCCceeEEe
Q psy11568        105 --QGSPTPKIEWL  115 (116)
Q Consensus       105 --~g~P~p~i~W~  115 (116)
                        .+.|.|.++|+
T Consensus       144 ~~~~~p~~~v~W~  156 (268)
T 3mj6_A          144 STEEKRVTKVNWM  156 (268)
T ss_dssp             ESSSSCCCEEEEE
T ss_pred             CCCCCCccceEEE
Confidence              67799999997

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.31  E-value=1.3e-11  Score=80.82  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=59.7

Q ss_pred             cEEEEEccCCeeeecc------ccceEEe------------e--CCeEEecCCCCCCCCCCCCceEEEEEEEcC--CCce
Q psy11568          2 YVLLWLIRDNTVIAYV------KDLRIAL------------S--NGSLMFPPFPETGFRPDVHSTVYRCRASNE--AGVI   59 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~------~~~~~~~------------~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~--~g~~   59 (116)
                      |.|+| +++|..+...      .+.++..            .  ...|.|.++..+      |+|.|+|.|.|.  .|..
T Consensus       211 p~i~W-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~g~~  283 (363)
T 1wio_A          211 GELWW-QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ------YAGSGNLTLALEAKTGKL  283 (363)
T ss_dssp             EEEEE-EESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGG------GCEEEEEEECBTTTTCCE
T ss_pred             eeEEE-ecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcC------cCcEEEEEEEEhhhcCeE
Confidence            78999 8888876531      0112222            2  238999999766      999999999999  8865


Q ss_pred             EE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCce--eEEeC
Q psy11568         60 LS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPK--IEWLI  116 (116)
Q Consensus        60 ~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~--i~W~~  116 (116)
                      .. ..|.|..                        ..|+.+.|.|.+.|.|.|.  ++|+.
T Consensus       284 ~~~~~l~V~~------------------------v~g~~~~l~C~~~g~p~p~~~i~W~~  319 (363)
T 1wio_A          284 HQEVNLVVMR------------------------ATQLQKNLTCEVWGPTSPKLMLSLKL  319 (363)
T ss_dssp             EEEEEEEEEE------------------------ECCCSSSEEEEEESSCCTTCCEEEEC
T ss_pred             EEEEeEEEEE------------------------ecCCCeeEEEEEccccCCCccEEEEe
Confidence            53 3222221                        1188899999999999998  99974

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.31  E-value=1.3e-11  Score=72.73  Aligned_cols=86  Identities=16%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL   81 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~   81 (116)
                      +.+.| +++|..+..        ....+.+.++..+      |+|.|+|.+.|..... ...|.|..+          +.
T Consensus        35 ~~~~W-~~~g~~~~~--------~~~~~~~~~~~~~------d~G~Y~C~~~~~~~s~-~~~l~v~~~----------~~   88 (170)
T 3ry4_A           35 DSIQW-FHNGNLIPT--------HTQPSYRFKANNN------DSGEYTCQTGQTSLSD-PVHLTVLFE----------WL   88 (170)
T ss_dssp             SCEEE-EETTEECTT--------CCSSEEEEECCGG------GCEEEEEEETTSBCCC-CEEEEEECC----------SE
T ss_pred             ceEEE-EECCeEccc--------CccceEEEecccc------cCeEEEEEEeCCCceE-eEEEEEECC----------ce
Confidence            57899 889887753        1335667788655      9999999999864332 234444432          33


Q ss_pred             eEecCCCeEEEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      ....+  ...+.+|+.+.|.|.+. +.|.+.++|+
T Consensus        89 ~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~  121 (170)
T 3ry4_A           89 VLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFF  121 (170)
T ss_dssp             EEECS--CSEECTTCCEEEEEEEGGGCCEEEEEEE
T ss_pred             EecCC--CceeecCCeEEEEEECCCCCCCceEEEE
Confidence            33333  34567899999999994 5577999997

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=77.99  Aligned_cols=76  Identities=22%  Similarity=0.309  Sum_probs=48.9

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee-
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA-  104 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-  104 (116)
                      +..|.|.++..+      |+|.|+|.+.+.........|.|..+       ...|.+...+  ...+..|+++.|.|.+ 
T Consensus        71 ~~sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~l~V~~~-------~~~p~i~~~~--~~~v~~G~~~~l~C~~~  135 (222)
T 4i0k_A           71 NASLRLQRVRVT------DEGSYTCFVSIQDFDSAAVSLQVAAP-------YSKPSMTLEP--NKDLRPGNMVTITCSSY  135 (222)
T ss_dssp             BCCEEECSCCGG------GCSCEEEEEEECCCCCCCCCCCCCBC-------CCCCEEECCC-------CCSEEEEEEEEE
T ss_pred             eEEEEECCcccc------cCEEEEEEEEeCCCceEEEEEEEEcC-------CCCCcEEeCC--CceecCCceEEEEEecc
Confidence            457999999766      99999999998632211222222221       0114444443  3456789999999999 


Q ss_pred             cCcCCceeEEeC
Q psy11568        105 QGSPTPKIEWLI  116 (116)
Q Consensus       105 ~g~P~p~i~W~~  116 (116)
                      .|.|.|.++|+.
T Consensus       136 ~g~P~~~v~W~~  147 (222)
T 4i0k_A          136 QGYPEAEVFWKD  147 (222)
T ss_dssp             EEBSCCEEEEEC
T ss_pred             cccCCCeEEEEc
Confidence            889999999973

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.31  E-value=7.7e-12  Score=81.90  Aligned_cols=86  Identities=7%  Similarity=-0.080  Sum_probs=61.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      .|.++| +++|..+        ...++.|.|.++..+      |+|.|+|.+.|..+.... ..+.|...          
T Consensus       125 ~~~v~W-~~~~~~~--------~~~~~~L~i~~v~~~------d~G~Y~C~a~~~~~~~~~~~~l~v~~~----------  179 (363)
T 1wio_A          125 SPSVQC-RSPRGKN--------IQGGKTLSVSQLELQ------DSGTWTCTVLQNQKKVEFKIDIVVLAF----------  179 (363)
T ss_dssp             CCCEEE-ECSSSCE--------EEESSEEEECSBCGG------GCEECEEEEEETTEEEEECCEECEECC----------
T ss_pred             CCeEEE-EcCCCcc--------cccceEEEEeeCChh------cCCEEEEEEecCCCeEEEEEEEEEecC----------
Confidence            378999 7776543        235668999999766      999999999997654432 23333321          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecC-----cCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQG-----SPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g-----~P~p~i~W~  115 (116)
                      |..    +....+.+|+.+.|.|.+.+     .|.|.++|+
T Consensus       180 p~~----~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~  216 (363)
T 1wio_A          180 QKA----SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ  216 (363)
T ss_dssp             SCS----EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEE
T ss_pred             CCC----CCceEEecCCEEEEEEEEecccccCCCceeEEEe
Confidence            221    14566788999999998888     889999996

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.31  E-value=1.3e-11  Score=74.79  Aligned_cols=73  Identities=21%  Similarity=0.252  Sum_probs=52.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA  104 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  104 (116)
                      .+|.|.++..+      |+|.|.|.+.+..+....  ..+.+..+         .+...... ....+..|..+.+.|.+
T Consensus        79 ~sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~c~~  142 (218)
T 4frw_A           79 GSVLLRNAVQA------DEGEYECRVSTFPAGSFQARLRLRVLVP---------PLPSLNPG-PALEEGQGLTLAASCTA  142 (218)
T ss_dssp             CCEEESSCCGG------GCEEEEEEEEEETTEEEEEEEEEEEEBC---------CCCEEEEC-SCEETTCCSEEEEEEEE
T ss_pred             EEEEEeeccHH------HCCceeEEEEeccCceeeeEEEEEEeee---------ccceeeee-eeeeeeeccccceeeec
Confidence            36999999766      999999999887665443  22222222         12222332 45566778999999999


Q ss_pred             cCcCCceeEEe
Q psy11568        105 QGSPTPKIEWL  115 (116)
Q Consensus       105 ~g~P~p~i~W~  115 (116)
                      .|.|+|.++|+
T Consensus       143 ~g~p~p~i~W~  153 (218)
T 4frw_A          143 EGSPAPSVTWD  153 (218)
T ss_dssp             EEBSCCEEEEE
T ss_pred             cCCcCceEEEE
Confidence            99999999997

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=1.6e-13  Score=89.72  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQG   79 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~   79 (116)
                      |.|.| ++++..+...........++.|.|.++..+      |+| .|+|.|.|..|.... ..+.|..+          
T Consensus       188 p~i~W-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~~Y~C~a~n~~g~~~~~~~l~V~~~----------  250 (347)
T 2ifg_A          188 EQAGW-ILTELEQSATVMKSGGLPSLGLTLANVTSD------LNRKNVTCWAENDVGRAEVSVQVNVSFP----------  250 (347)
T ss_dssp             CCCCE-EESCCCSSEEECCCCCSSEEEEEEESCCST------TTTCCEEECCEETTEECCEEECCCCBEE----------
T ss_pred             CEEEE-EcCCceeecccccceecccceEEEeeCChH------HCCCeEEEEEEcCCCCEEEEEEEEEcCC----------
Confidence            67899 666655432111111223447999999766      999 999999999876653 33333222          


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...     ...+|+.+.|.|.+.|.|.|.++|+
T Consensus       251 P~i~~~-----~~~~g~~v~l~C~~~g~P~p~i~W~  281 (347)
T 2ifg_A          251 ASVQLH-----TAVEMHHWCIPFSVDGQPAPSLRWL  281 (347)
T ss_dssp             EEEEEC-----CCEESSSEEEEEEEEEESCCEEEEE
T ss_pred             Ceeeec-----cCccCceEEEEEEeeecCCCcEEEE
Confidence            342111     1245899999999999999999996

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.31  E-value=1.8e-11  Score=74.57  Aligned_cols=75  Identities=17%  Similarity=0.300  Sum_probs=51.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc--eEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV--ILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~--~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.|..+.  ...  ..|.|....     .. .|.+...+ ....+..|+.+.|.|.
T Consensus        71 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-----~~-~P~i~~~~-~~~~~~~g~~v~l~C~  137 (213)
T 3mj8_L           71 TLTISKAQAG------DEADYYCQSWDGTNSAWVFGSGTKVTVLGQP-----NA-APSVTLFP-PSSEELKTNQATLVCM  137 (213)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETTTTEEEEBCCEEEEEECSC-----CB-CCEEEEEC-CCHHHHTTTEEEEEEE
T ss_pred             EEEECCCChh------hCEEEEEEeccCCcceeEEcCceEEEEeCCC-----CC-CCeEEccC-CCcccccCCcEEEEEE
Confidence            6999999766      999999999999873  222  445554210     01 26665554 2333447999999999


Q ss_pred             ecCc-CC-ceeEEe
Q psy11568        104 AQGS-PT-PKIEWL  115 (116)
Q Consensus       104 ~~g~-P~-p~i~W~  115 (116)
                      +.|. |+ +.++|+
T Consensus       138 ~~g~~p~~~~v~W~  151 (213)
T 3mj8_L          138 INGFYPADVAVTWE  151 (213)
T ss_dssp             EEEEBSSCCEEEEE
T ss_pred             eeceeCCCeEEEEE
Confidence            9996 33 389997

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.31  E-value=3.1e-11  Score=74.79  Aligned_cols=77  Identities=18%  Similarity=0.334  Sum_probs=53.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+...  ...|.|....    .....+.+...+ ....+.+|+++.|.|.+.
T Consensus        76 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~----~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~  144 (240)
T 1moe_A           76 TLIIDPVEAD------DVATYYCQQTNEDPYTFGGGTKLEIKGGG----SGGGGEVQLQQS-GAELVEPGASVKLSCTAS  144 (240)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCCBCCCEEEEECCCS----CCCCCCCEEEEC-CCEEECTTCCEEEEEEEE
T ss_pred             EEEEcCCChh------hCEEEEEEEccCCceeecCCEEEEEecCC----CCCCceEEEeCC-CceEEeCCCcEEEEEEEc
Confidence            6999999766      99999999999866432  2344444320    000112334444 567788999999999999


Q ss_pred             CcCC--ceeEEe
Q psy11568        106 GSPT--PKIEWL  115 (116)
Q Consensus       106 g~P~--p~i~W~  115 (116)
                      |.|.  +.+.|+
T Consensus       145 g~p~~~~~v~W~  156 (240)
T 1moe_A          145 GFNIKDTYMHWV  156 (240)
T ss_dssp             SSCGGGSCEEEE
T ss_pred             CccCCCCEEEEE
Confidence            9874  589997

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.31  E-value=6.1e-12  Score=76.58  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc-eEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA  104 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  104 (116)
                      .|.|.++..+      |+|.|.|.+.|..+. ...  ..|.|...     ... .|.+...+ ....+..|+.+.|.|.+
T Consensus        69 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~v~~~~-~~~~~~~g~~v~l~C~~  135 (211)
T 3tv3_L           69 SLTVSGLQTD------DEAVYYCGSLVGNWDVIFGGGTKLTVLGQ-----PKA-APSVTLFP-PSSEELQANKATLVCLI  135 (211)
T ss_dssp             EEEEESCCGG------GCEEEEEEEEETTTEEEECCCEEEEECCS-----CCB-CCEEEEEC-CCHHHHHTTCEEEEEEE
T ss_pred             EEEECCCChh------HCEEEEEEEecCCCceeECCCceEEEeCC-----CCc-CCeeEecC-CchhhhcCCCeEEEEEe
Confidence            6999999766      999999999998872 222  34444421     001 26665554 22333469999999999


Q ss_pred             cCc--CCceeEEe
Q psy11568        105 QGS--PTPKIEWL  115 (116)
Q Consensus       105 ~g~--P~p~i~W~  115 (116)
                      .|.  |.+.++|+
T Consensus       136 ~g~~p~~~~v~W~  148 (211)
T 3tv3_L          136 SDFYPGAVTVAWK  148 (211)
T ss_dssp             EEEBSSCCEEEEE
T ss_pred             eeecCCCeEEEEE
Confidence            986  35789996

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.30  E-value=4.7e-12  Score=80.26  Aligned_cols=99  Identities=10%  Similarity=0.045  Sum_probs=66.3

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQ   78 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~   78 (116)
                      |.++|++.++..+...  .+.. ..++.|.|.++..+      |+|.|+|.+.|..+...+  ..|.|...     ...+
T Consensus       120 ~~v~W~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~s~~~~l~V~~~-----~~~~  186 (292)
T 4dkd_C          120 AGVSLVRVRGRPLMRH--TNYSFSPWHGFTIHRAKFI------QSQDYQCSALMGGRKVMSISIRLKVQKV-----IPGP  186 (292)
T ss_dssp             SSEEEEEGGGCCCCSS--CCEECCSSSCCEETTCCGG------GCSEEEEEECSTTSCEECCCEEEEEECC-----CCSS
T ss_pred             eeEEEEecCCCccccC--CcccccCCceEEECCCCHH------HCeEEEEEEEeCCCceeEEEEEEEEeCC-----CCCC
Confidence            6799955556665432  2232 23456999999766      999999999998776653  44555431     0012


Q ss_pred             CCceEecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568         79 GPLFRIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWL  115 (116)
Q Consensus        79 ~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~  115 (116)
                       |.+...+ ....+..|+.+.|.|.+.+.|. +.+.|+
T Consensus       187 -p~i~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~~~w~  222 (292)
T 4dkd_C          187 -PALTLVP-AELVRIRGEAAQIVCSASSVDVNFDVFLQ  222 (292)
T ss_dssp             -CEEEEES-SCBCCCSSSCEEEEEEEEESSSCCEEECC
T ss_pred             -CeEEccC-CceeEecCCCEEEEEEecCCCCceEEEEe
Confidence             6666665 4555678999999999998775 356664

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.30  E-value=4.2e-11  Score=75.08  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC----ceE-EEEEEEEeCcE------ee-eeccCCCceEecCCCeEEEeCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG----VIL-SRFVHVKAGSV------VS-LLDIQGPLFRIEPPYRFEFSNE   95 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g----~~~-~~~~~v~~~~~------~~-~~~~~~p~~~~~~~~~~~~~~g   95 (116)
                      .|.|.++..+      |+|.|.|.+.|..+    ... ...|.|.....      +. ....+ |.+...+ ....+.+|
T Consensus        82 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~-~~~~~~p-~~~~v~~G  153 (256)
T 3umt_A           82 YLELRSLTSE------DSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTD-IQLTQSP-SSLSASLG  153 (256)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CC-CCEEEEC-SEEEECTT
T ss_pred             EEEECCCCcc------cCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccc-cEEEcCC-CeEEEECC
Confidence            4999999766      99999999998721    111 13344432100      00 00011 5555555 77889999


Q ss_pred             CcEEEEeeecCcCCceeEEe
Q psy11568         96 SGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        96 ~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +++.|.|.+.+.|.|.+.|+
T Consensus       154 ~~v~L~C~~~~~~~~~v~W~  173 (256)
T 3umt_A          154 ERVSITCRASQDIGSNLNWL  173 (256)
T ss_dssp             CCEEEEEEESSCCTTCEEEE
T ss_pred             CCEEEEEEEecCCCcEEEEE
Confidence            99999999999999999996

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.29  E-value=2.5e-11  Score=83.88  Aligned_cols=97  Identities=21%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             cEEEEEccCCeeeecc-----------ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYV-----------KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~-----------~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      |.|+| ++++..+...           .+......+++|.|.+++.+      |+|.|+|.+.|..|....  ..|.|..
T Consensus       397 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          397 QRLEW-KLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQ------DEGIFRCQAMNRNGKETKSNYRVRVYQ  469 (581)
T ss_dssp             CEEEE-EEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGG------GCEEEEEEEECTTSCEEEEEEEEEEEB
T ss_pred             ceEEE-EEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccc------cCeEEEEEEEcCCCceeEEEEEEEEEc
Confidence            68999 6665432110           11223445668999999766      999999999999887732  4555544


Q ss_pred             CcEeeeeccCCCceEecCCCeEEEeCCCcE-EEEeeecC-cCCceeEEe
Q psy11568         69 GSVVSLLDIQGPLFRIEPPYRFEFSNESGG-RLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        69 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-~l~C~~~g-~P~p~i~W~  115 (116)
                      +.      . .|.+.... . . +..+... .|.|.+.+ .|.|.++|+
T Consensus       470 ~~------~-~p~i~~~~-~-~-~~~~~~~~~l~C~~~~~~P~~~i~W~  508 (581)
T 3o3u_N          470 IP------G-KPEIVDSA-S-E-LTAGVPNKVGTCVSEGSYPAGTLSWH  508 (581)
T ss_dssp             CC------C-CCEEESCC-S-E-ECTTSCEEEEEEEEEEEBSCCEEEEE
T ss_pred             CC------C-CCEEEcCC-c-c-cccCCceeEEEEECCCCCCCCeEEEE
Confidence            20      1 13332222 2 2 4455554 66999998 599999997

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.29  E-value=2.1e-11  Score=75.09  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCc
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPL   81 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~   81 (116)
                      .|.| ++.+..+.   .......+..|.|.++..+      |+|.|.|.+.|..+... ...|.|..+          |.
T Consensus        39 ~i~W-~~~~~~l~---~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~n~~~~~~~~~~ltV~~~----------P~   98 (210)
T 1gsm_A           39 SVQW-RGLDTSLG---AVQSDTGRSVLTVRNASLS------AAGTRVCVGSCGGRTFQHTVQLLVYAF----------PN   98 (210)
T ss_dssp             EEEE-ESSTTTTC---CEEEESSEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEBC----------CS
T ss_pred             ceEE-eecccccC---cEEecCCccEEEECccCcc------cCceEEEEEEeCCCceEEEEEEEEEec----------CC
Confidence            8999 55433221   1111222347999999766      99999999999887654 255555553          54


Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCc-CC----ceeEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGS-PT----PKIEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~-P~----p~i~W~  115 (116)
                      .....+.  ....|+.+ |.|.+.|. |.    +.++|+
T Consensus        99 ~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wl  134 (210)
T 1gsm_A           99 QLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLL  134 (210)
T ss_dssp             EEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEE
T ss_pred             CcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEE
Confidence            4332212  45568888 99999986 64    478996

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.29  E-value=7.8e-12  Score=78.56  Aligned_cols=80  Identities=15%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-------ceE---EEEEEEEeCcE------eeeeccCCCceEecCCCeEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-------VIL---SRFVHVKAGSV------VSLLDIQGPLFRIEPPYRFE   91 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-------~~~---~~~~~v~~~~~------~~~~~~~~p~~~~~~~~~~~   91 (116)
                      .|.|.++..+      |+|.|.|.+.|..|       ...   ...|.|.....      +.... ..+.+...+ ....
T Consensus        79 ~L~I~~v~~~------DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~-~~~~~~~~p-~~~~  150 (257)
T 1f3r_B           79 FLKMNSLQTD------DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGG-SDIKLTQSP-SLLS  150 (257)
T ss_dssp             EEEEESCCTT------CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCC-CEECSCEET-SEEC
T ss_pred             EEEECCCCcc------cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCc-cceEEEccC-CEEE
Confidence            7999999766      99999999999864       111   12344433100      00000 001222333 5677


Q ss_pred             EeCCCcEEEEeeecCcCCceeEEe
Q psy11568         92 FSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        92 ~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.+|+++.|.|.+.+.|.|.+.|+
T Consensus       151 v~~G~~v~L~C~~~~~~~~~v~W~  174 (257)
T 1f3r_B          151 ASVGDRVTLSCKGSQNINNYLAWY  174 (257)
T ss_dssp             CCTTCCEEEEEECSSCCBTCEEEE
T ss_pred             EcCCCCEEEEEEECCcCCCcEEEE
Confidence            889999999999999999999997

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.29  E-value=3.6e-11  Score=82.94  Aligned_cols=71  Identities=10%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|+|.+.|..+.... ..|.|..+          |.+...+ ....+.+|+.+.|.|.+.+
T Consensus        76 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~l~V~~~----------p~~~~~~-~~~~v~~G~~v~l~C~~~~  138 (585)
T 2ocw_A           76 VVNIAQLSQD------DSGRYKCGLGINSRGLSFDVSLEVSQG----------PGLLNDT-KVYTVDLGRTVTINCPFKT  138 (585)
T ss_pred             EEEECCCCcc------cCEEEEEEcccCCCCceEEEEEEEecC----------ccccCCC-ccEEEEcCCCEEEEEEecC
Confidence            5999999766      999999999998776543 44555443          6665554 7788899999999999997


Q ss_pred             cC-CceeEEe
Q psy11568        107 SP-TPKIEWL  115 (116)
Q Consensus       107 ~P-~p~i~W~  115 (116)
                      .| .+.+.|+
T Consensus       139 ~~~~~~v~W~  148 (585)
T 2ocw_A          139 ENAQKRKSLY  148 (585)
T ss_pred             CCCCccEEEE
Confidence            54 6779997

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.29  E-value=2.2e-12  Score=86.49  Aligned_cols=89  Identities=20%  Similarity=0.369  Sum_probs=54.9

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC-ceE----EEEEEEEeCcEeeeec
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG-VIL----SRFVHVKAGSVVSLLD   76 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-~~~----~~~~~v~~~~~~~~~~   76 (116)
                      |.|+|   +|.++.. .+     ....|.|.++..+      |+|.|+|.|.|..+ ...    ...|.|..+       
T Consensus       311 p~i~W---~g~~~~~-~~-----~~~~L~i~~~~~~------d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~-------  368 (450)
T 1z7z_I          311 AKVTL---NGVPAQP-LG-----PRAQLLLKATPED------NGRSFSCSATLEVAGQLIHKNQTRELRVLYG-------  368 (450)
T ss_dssp             -----------------C-----CCCCEEEECCGGG------TTCEEEEEEEEEETTEEEEEEEEEECEEEEE-------
T ss_pred             CEeEE---CCEEcCC-CC-----ceEEEEEecCccc------CCceEEEEEEcCCCCcccccceeEEEEEecC-------
Confidence            67788   6666521 11     2347899999766      99999999997644 332    133444332       


Q ss_pred             cCCCceEecC-CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFRIEP-PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                         |.+...+ +....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       369 ---P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~  405 (450)
T 1z7z_I          369 ---PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL  405 (450)
T ss_dssp             ---EECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             ---CceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEE
Confidence               4443332 36778899999999999999999999997

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.29  E-value=8e-12  Score=79.11  Aligned_cols=93  Identities=11%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCc
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPL   81 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~   81 (116)
                      .|+| ++++....   .......+..|.|.++..+      |+|.|+|.+.|..+... ...|.|..+        + ..
T Consensus        31 ~v~W-~~~~~~~~---~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~~~~~~~~~l~V~~~--------~-~~   91 (289)
T 3ejj_X           31 SVEW-DGPISPYW---TLDPESPGSTLTTRNATFK------NTGTYRCTELEDPMAGSTTIHLYVKDP--------A-HS   91 (289)
T ss_dssp             CCEE-ECSCSSSS---EECCCSSCCEEEESSCCGG------GCEEEEEECCC-----CEEEEEEECCS--------S-CS
T ss_pred             cEEE-ccCCCceE---EEeccCCccEEEEeeeccc------cCEEEEEEEeccCCcceeEEEEEEeCC--------C-cc
Confidence            3689 56553321   1111123458999999766      99999999999876544 345555543        1 22


Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCcCCce-eEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPK-IEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~-i~W~  115 (116)
                      +...+ ....+.+|+.+.|.|.+.+.|.+. ++|+
T Consensus        92 ~~~~~-~~~~v~~g~~v~L~C~~~~~~~~~~v~W~  125 (289)
T 3ejj_X           92 WNLLA-QEVTVVEGQEAVLPCLITDPALKDSVSLM  125 (289)
T ss_dssp             EEESC-SEEEEETTSCEEECEEESCGGGGGSEEEE
T ss_pred             eeccc-ceEEEecCCceEeEEEccCCCcceEEEEE
Confidence            44555 788889999999999999988775 9996

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.29  E-value=5.2e-11  Score=75.84  Aligned_cols=79  Identities=18%  Similarity=0.265  Sum_probs=53.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc---eE---EEEEEEEeCcE------eeeeccCCCceEecCCCeEEEeCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV---IL---SRFVHVKAGSV------VSLLDIQGPLFRIEPPYRFEFSNE   95 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~---~~---~~~~~v~~~~~------~~~~~~~~p~~~~~~~~~~~~~~g   95 (116)
                      .|.|.++..+      |+|.|.|.+.|..|.   ..   ...|.|.....      +... ...+.+...+ ....+.+|
T Consensus       106 sL~I~~v~~~------DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~-~~~~~~~~~p-~~~~v~~G  177 (282)
T 1qok_A          106 YLQLSSLTSE------DTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGG-GSENVLTQSP-AIMSASPG  177 (282)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSSSSCCCEEECCCEEEEEEC----------------CCCEEEEC-SEEEECTT
T ss_pred             EEEECcCChh------hCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCC-ccceEEecCC-CEEEEcCC
Confidence            7999999766      999999999998761   11   12455543200      0000 0113344444 67788999


Q ss_pred             CcEEEEeeecCcCCceeEEe
Q psy11568         96 SGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        96 ~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +++.|.|.+.+.| |.+.|+
T Consensus       178 ~~v~L~C~~~~~~-~~v~W~  196 (282)
T 1qok_A          178 EKVTITCSASSSV-SYMHWF  196 (282)
T ss_dssp             CCEEEEEEESSCC-SCCEEE
T ss_pred             CcEEEEEEecCCC-ceEEEE
Confidence            9999999999999 999997

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.28  E-value=7.1e-11  Score=72.67  Aligned_cols=70  Identities=21%  Similarity=0.326  Sum_probs=50.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC-
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG-  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g-  106 (116)
                      .|.|.++..+      |+|.|+|.+.|..|.... .+.+...          +..... .....+.+|..+.+.|.+.| 
T Consensus        84 ~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~-~v~~~~~----------~~~~~~-~~~~~~~~g~~v~l~c~~~g~  145 (226)
T 4f80_A           84 ALRIHNVTAS------DSGKYLCYFQDGDFYEKA-LVELKVA----------ALGSDL-HVDVKGYKDGGIHLECRSTGW  145 (226)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETTEEEEE-EEEEEEE----------BCCCCC-EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeeCchH------HCeeEEEEEECCCcEEEE-EEEEeec----------cceecc-cceeeeccCCceeeEEEeccC
Confidence            6999999766      999999999998876553 2222221          111111 13456677999999999988 


Q ss_pred             cCCceeEEe
Q psy11568        107 SPTPKIEWL  115 (116)
Q Consensus       107 ~P~p~i~W~  115 (116)
                      .|.|.++|+
T Consensus       146 ~P~p~i~W~  154 (226)
T 4f80_A          146 YPQPQIQWS  154 (226)
T ss_dssp             BSCCEEEEE
T ss_pred             CCCCEEEEE
Confidence            499999997

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.5e-11  Score=68.84  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=45.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      |.+.| +++|..+...........++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|..
T Consensus        38 p~i~W-~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           38 PTILW-RKDGVLVSTQDSRIKQLENGVLQIRYAKLG------DTGRYTCIASTPSGEATWSAYIEVQE   98 (118)
T ss_dssp             CEEEE-EESSSBCCTTSTTEEEEETTEEEEESCCGG------GCCCEEEEEECSSCEEEEECCEEEEC
T ss_pred             CEEEE-EECCEECcCCCCeEEEccCCEEEEccCCcC------CCEEEEEEEEcCCCcEEEEEEEEEEe
Confidence            78999 889888764223233456779999999766      999999999999988664 4455554

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.27  E-value=7.3e-11  Score=73.57  Aligned_cols=81  Identities=11%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCc--Eeeee-------ccCCCceEecCCCeEEEeCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGS--VVSLL-------DIQGPLFRIEPPYRFEFSNES   96 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~--~~~~~-------~~~~p~~~~~~~~~~~~~~g~   96 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|..+.  .+...       ....+.++..+ ....+.+|+
T Consensus        75 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~  147 (250)
T 3esu_F           75 SLTISNLEQE------DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQS-GPELVKPGA  147 (250)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEEC-CCEEECTTC
T ss_pred             EEEEccCChh------hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecC-CceEEcCCc
Confidence            6999999766      999999999998665432  334443210  00000       00012333444 567788999


Q ss_pred             cEEEEeeecCcC--CceeEEe
Q psy11568         97 GGRLDCAAQGSP--TPKIEWL  115 (116)
Q Consensus        97 ~~~l~C~~~g~P--~p~i~W~  115 (116)
                      ++.|.|.+.+.|  .|.+.|+
T Consensus       148 ~v~L~C~~~~~~~~~~~v~W~  168 (250)
T 3esu_F          148 SVKISCKDSGYAFSSSWMNWV  168 (250)
T ss_dssp             CEEEEEECCSTTGGGSEEEEE
T ss_pred             eEEEEEEecCCcccCCEEEEE
Confidence            999999999877  8899997

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.27  E-value=1.4e-11  Score=75.39  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCce---E--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI---L--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~---~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      ..|.|.++..+      |+|.|.|.+.|..+..   .  ...|.|...     ... .|.+...++ ...+..|+.+.|.
T Consensus        79 ~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~i~~~~~-~~~~~~g~~v~L~  145 (219)
T 1c1e_H           79 AYLQINNLKNE------DMATYFCARGTTIVRAMDYWGQGTSLTVSSA-----KTT-PPSVYPLAP-GSAAQTNSMVTLG  145 (219)
T ss_dssp             EEEEECSCCGG------GCEEEEEEEEETTTTEEEEECCCEEEEECCC-----CCB-CCEEEEECC-CSSSCCSSEEEEE
T ss_pred             EEEEECCCCcc------cCEEEEEEEeccCcccceeecCceEEEEecC-----CCC-CCeEEEecC-ccccccCCeEEEE
Confidence            37999999766      9999999999986421   1  133444321     001 144443331 1234679999999


Q ss_pred             eeecC-cCCc-eeEEe
Q psy11568        102 CAAQG-SPTP-KIEWL  115 (116)
Q Consensus       102 C~~~g-~P~p-~i~W~  115 (116)
                      |.+.| .|.| .++|+
T Consensus       146 C~~~g~~P~p~~v~W~  161 (219)
T 1c1e_H          146 CLVKGYFPEPVTVTWN  161 (219)
T ss_dssp             EEEEEEBSSCCEEEEG
T ss_pred             EEcccccCCCeEEEEE
Confidence            99999 8999 99996

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.27  E-value=2.4e-11  Score=81.42  Aligned_cols=101  Identities=12%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeecc--CC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDI--QG   79 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~--~~   79 (116)
                      .|+| +++|.++....... ...++.|.|.++..+      |+|.|+|.|.|..|.... ..+.+.....+.+...  ..
T Consensus       120 ~v~W-~k~g~~l~~~~~~~-~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~  191 (450)
T 1z7z_I          120 TVVL-LRGEKELKREPAVG-EPAEVTTTVLVRRDH------HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP  191 (450)
T ss_dssp             EEEE-EETTEEEEEEECCT-TTEEEEEEEECCSSC------SSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSC
T ss_pred             EEEE-eeCCEEeecccccc-cccceEEEEEeeccc------cCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCC
Confidence            8999 99999886422100 112247999998665      999999999999775331 2222222222222211  01


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCc-C--CceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGS-P--TPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P--~p~i~W~  115 (116)
                      |.+. .+   ..+.+|+.+.|.|.+.|. |  .+.++|+
T Consensus       192 p~~~-~~---~~v~~G~~v~l~C~~~g~~P~~~~~~~W~  226 (450)
T 1z7z_I          192 PQLV-SP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLA  226 (450)
T ss_dssp             CEEE-CC---SEEETTSEEEEEEEEESCTTGGGCEEEEE
T ss_pred             CEec-Cc---eeEEeCCcEEEEEEeeCCCCCCceEEEEe
Confidence            2221 11   567889999999999999 7  7899996

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=83.82  Aligned_cols=101  Identities=21%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             cEEEEEccCCeeeeccccce-EEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR-IALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~-~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~   73 (116)
                      |.|+| ++||.++....... ....++      .|.|.++..+      |+|.|+|.|.|..+... ...+.+...    
T Consensus       353 ~~v~W-~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~~~~~~~~~~~~~----  421 (523)
T 2rcj_C          353 VKFNW-YVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWL------DGKEYKCKVSNKALPAPIEKTISKAKG----  421 (523)
T ss_pred             eEEEE-EECCeEccCCccCCceecCCCcEEEEEEEEECHHHhc------CCCeEEEEEeCCCCCCceeEEEEcccC----
Confidence            48999 99998886432111 111222      4777777555      99999999999876543 233332100    


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc--eeEEeC
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP--KIEWLI  116 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~  116 (116)
                       ... .|.+...++....+. +..+.|.|.+.|.|+|  .++|+.
T Consensus       422 -~~~-~P~v~~~~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k  463 (523)
T 2rcj_C          422 -QPR-EPQVYTLPPSREEMT-KNQVSLTCLVKGFYPSDIAVEWES  463 (523)
T ss_pred             -CCC-CCEEEEeCCChHHcc-CCceEEEEEEEeeECCCCEEEEEE
Confidence             011 255554442333333 4559999999998776  889973

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.26  E-value=6.7e-12  Score=78.96  Aligned_cols=91  Identities=22%  Similarity=0.377  Sum_probs=62.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC-CCceEE----EEEEEEeCcEeeee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE-AGVILS----RFVHVKAGSVVSLL   75 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~-~g~~~~----~~~~v~~~~~~~~~   75 (116)
                      .|.|+|   +|.++... +     ..+.|.|..+..+      |+|.|+|.|.|. .|....    ..|.|..+      
T Consensus       125 ~~~i~W---~g~~~~~~-~-----~~~~l~i~~~~~~------~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~------  183 (265)
T 2oz4_A          125 RAKVTL---NGVPAQPL-G-----PRAQLLLKATPED------NGRSFSCSATLEVAGQLIHKNQTRELRVLYG------  183 (265)
T ss_dssp             TSEEEE---SSCSSSCC-S-----SEECCEEECCGGG------TTEEEEEEEEEECSSSEEEEEEEEEEEEEEE------
T ss_pred             CCEEEE---CCEEccCC-C-----CcEEEEEcccccc------CCceEEEEEEcCCCCCcccccccEEEEEEeC------
Confidence            378899   77766321 1     1235777777555      899999999854 466542    33444432      


Q ss_pred             ccCCCceEec-CCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         76 DIQGPLFRIE-PPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        76 ~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                          |.+... .+....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus       184 ----p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~  221 (265)
T 2oz4_A          184 ----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK  221 (265)
T ss_dssp             ----EECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEE
T ss_pred             ----CccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEE
Confidence                333222 1357788899999999999999999999973

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.26  E-value=1.1e-10  Score=75.20  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=53.7

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEE-EEcCCCceEE-EEEEEEeCcEeeeeccCCCceEe-cCCCeEEEeCC---CcEE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCR-ASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRI-EPPYRFEFSNE---SGGR   99 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~-a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~~g---~~~~   99 (116)
                      ++.|.|.++..+      |+|.|+|. +.+..|.... ..|.|...          |.+.. ..+....+.+|   +.+.
T Consensus        91 ~~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~----------p~~~~~~~~~~~~~~~g~~~~~~~  154 (331)
T 3u83_A           91 DGTIRLSRLELE------DEGVYICEFATFPTGNRESQLNLTVMAK----------PTNWIEGTQAVLRAKKGQDDKVLV  154 (331)
T ss_dssp             BCCEEECSCCGG------GCEEEEEEEEEETTEEEEEEEEEEEEBC----------CEEEEEECSSCEEECTTCCCCEEE
T ss_pred             CceEEEcccCcc------cCcEEEEEEEecCCCccEEEEEEEEecC----------CcceeecCCCceeecCCCccceEE
Confidence            457999999766      99999998 6666665443 45555543          44422 22366777778   7799


Q ss_pred             EEee-ecCcCCceeEEe
Q psy11568        100 LDCA-AQGSPTPKIEWL  115 (116)
Q Consensus       100 l~C~-~~g~P~p~i~W~  115 (116)
                      |.|. +.+.|.|.++|+
T Consensus       155 l~C~~~~~~p~~~i~W~  171 (331)
T 3u83_A          155 ATCTSANGKPPSVVSWE  171 (331)
T ss_dssp             EEEEEEEEBSCCEEEEE
T ss_pred             EEEEecCCcCCceEEEE
Confidence            9997 889999999996

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.26  E-value=2.9e-11  Score=73.63  Aligned_cols=74  Identities=22%  Similarity=0.394  Sum_probs=51.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|+|.+.|..+....  ..+.|...      .. .|.+...++.. ....|+.+.|.|.+.
T Consensus        72 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~-~p~v~~~~~~~-~~~~g~~~~l~C~~~  137 (213)
T 3d9a_L           72 TLSINSVETE------DFGMYFCQQSNSWPYTFGGGTKLEIKRA------DA-APTVSIFPPSS-EQLTSGGASVVCFLN  137 (213)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEECCC------CB-CCEEEEECCCH-HHHHTTEEEEEEEEE
T ss_pred             EEEECCCChh------hCEEEEEeeecCCcceeCCCEEEEEecC------CC-CceeEeECCCh-hhcCCCcEEEEEEEe
Confidence            7999999766      999999999998775442  34444331      01 25555544222 234688999999998


Q ss_pred             C-cCCc-eeEEe
Q psy11568        106 G-SPTP-KIEWL  115 (116)
Q Consensus       106 g-~P~p-~i~W~  115 (116)
                      | .|.| .++|+
T Consensus       138 g~~p~~~~v~W~  149 (213)
T 3d9a_L          138 NFYPKDINVKWK  149 (213)
T ss_dssp             EEBSSCCEEEEE
T ss_pred             eecCCceEEEEE
Confidence            8 5665 89997

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.26  E-value=1.6e-11  Score=74.83  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS  107 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~  107 (116)
                      .|.|.++..+      |+|.|.|.+.|.........|.|...     ... .|.+...++. ..+..|+.+.|.|.+.|.
T Consensus        79 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~l~V~~~-----~~~-~P~v~~~~~~-~~~~~g~~v~L~C~~~g~  145 (210)
T 3d9a_H           79 YLDLNSVTTE------DTATYYCANWDGDYWGQGTLVTVSAA-----KTT-PPSVYPLAPG-SAAQTNSMVTLGCLVKGY  145 (210)
T ss_dssp             EEEECSCCGG------GCEEEEEEETTSSCBCCCEEEEECCC-----CCB-CCEEEEECCT-TSCCCSSEEEEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEecCcccccceEEEeccC-----CCC-CCEEEEecCC-cccccCCcEEEEEEEeeE
Confidence            7999999766      99999999998641112234444321     001 1555433312 234679999999999997


Q ss_pred             -CCc-eeEEe
Q psy11568        108 -PTP-KIEWL  115 (116)
Q Consensus       108 -P~p-~i~W~  115 (116)
                       |.| .++|+
T Consensus       146 ~P~p~~v~W~  155 (210)
T 3d9a_H          146 FPEPVTVTWN  155 (210)
T ss_dssp             BSSCCEEEEG
T ss_pred             ecCCcEEEEe
Confidence             888 99996

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.25  E-value=2.1e-11  Score=74.27  Aligned_cols=75  Identities=15%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..+.|....     .. .|.+...++. ..+..|+.+.|.|.+.
T Consensus        74 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-----~~-~P~v~~~~~~-~~~~~g~~v~L~C~~~  140 (212)
T 1q0x_L           74 ALTITGAQTE------DEAIYFCALWSNNKLVFGGGTKLTVLGQP-----KS-SPTVTLFPPS-SEELSTAKATLVCTIT  140 (212)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECSSCEEECCCEEEEECCSC-----CB-CCEEEEECCC-HHHHTTTEEEEEEEEE
T ss_pred             EEEECCCCcc------CCEEEEEEEecCchhhcCCCeEEEEecCC-----CC-CCeeEEeCCC-HHHccCCcEEEEEEEE
Confidence            7999999766      999999999998764332  334442110     01 2555544322 2234688999999999


Q ss_pred             CcCCc--eeEEe
Q psy11568        106 GSPTP--KIEWL  115 (116)
Q Consensus       106 g~P~p--~i~W~  115 (116)
                      |.+++  .++|+
T Consensus       141 g~~p~~~~v~W~  152 (212)
T 1q0x_L          141 DFYPGVVTVDWK  152 (212)
T ss_dssp             EEBSSCCEEEEE
T ss_pred             EEeCCCeEEEEE
Confidence            86543  89997

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.25  E-value=1.6e-10  Score=71.90  Aligned_cols=80  Identities=11%  Similarity=0.102  Sum_probs=51.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEe----eeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVV----SLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~----~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|..+...    .....+ +..+..+ ....+.+|+++.|.
T Consensus        77 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~-~~~~~~~-~~~~v~~G~~v~L~  148 (247)
T 1svz_A           77 TLKISRVEAE------DLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGS-EVQLQQS-GPELKKPGETVKIS  148 (247)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEEC----------------CCEEEEC-CCEEECTTCCEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEccCCccEECCCEEEEEECCccccccccccccC-ceEEeCC-CceeecCCCcEEEE
Confidence            6999999766      999999999998654332  34444432000    000001 2333444 33458899999999


Q ss_pred             eeecCcC--CceeEEe
Q psy11568        102 CAAQGSP--TPKIEWL  115 (116)
Q Consensus       102 C~~~g~P--~p~i~W~  115 (116)
                      |.+.+.|  .+.+.|+
T Consensus       149 C~~~~~~~~~~~v~W~  164 (247)
T 1svz_A          149 CKATNYAFTDYSMHWV  164 (247)
T ss_dssp             EEEESSCGGGSCEEEE
T ss_pred             EEEcCcccCCcEEEEE
Confidence            9999885  5789997

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.25  E-value=4e-11  Score=72.96  Aligned_cols=74  Identities=22%  Similarity=0.454  Sum_probs=50.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|...      .. .|.+...++.. .+..|+.+.|.|.+.
T Consensus        71 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~-~P~v~~~~~~~-~~~~g~~v~l~C~~~  136 (210)
T 1lk3_L           71 TLTIDPVEAD------DTAIYFCQQSWNGPLTFGAGTKLELKRA------DA-APTVSIFPPST-EQLATGGASVVCLMN  136 (210)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEECCC------CB-CCEEEEECCCH-HHHTTTEEEEEEEEE
T ss_pred             EEEECCCCHH------HCeEEEEEEEcCCCceeCCCEEEEEcCC------Cc-CCeEEEECCch-hhccCCcEEEEEEEE
Confidence            7999999766      999999999998765442  34444331      01 15555544222 234799999999999


Q ss_pred             Cc-CCc-eeEEe
Q psy11568        106 GS-PTP-KIEWL  115 (116)
Q Consensus       106 g~-P~p-~i~W~  115 (116)
                      |. |.| .++|+
T Consensus       137 g~~p~~~~v~W~  148 (210)
T 1lk3_L          137 NFYPRDISVKWK  148 (210)
T ss_dssp             EEBSSCCEEEEE
T ss_pred             eEeCCceEEEEE
Confidence            84 554 89997

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.25  E-value=1.1e-10  Score=73.47  Aligned_cols=88  Identities=13%  Similarity=0.124  Sum_probs=61.1

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCC---CCCCCCCCCCce--EEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPF---PETGFRPDVHST--VYRCRASNEAGVILS-RFVHVKAGSVVSLLD   76 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v---~~~~~~~~~d~G--~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~   76 (116)
                      .|+| +++|.++..    .....++.+.+..+   ..+      |+|  .|+|.+.|..|.... ..|.|...       
T Consensus        37 ~v~W-~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~------d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~-------   98 (265)
T 2oz4_A           37 QVHL-ALGDQRLNP----TVTYGNDSFSAKASVSVTAE------DEGTQRLTCAVILGNQSQETLQTVTIYSF-------   98 (265)
T ss_dssp             EEEE-EETTEECCC----EEEECSSEEEEEEEEEECGG------GCEEEEEEEEEEETTEEEEEEEEEEEECC-------
T ss_pred             EEEE-EeCCEECCc----eEeeCCCeEEEEeecccccc------cCCcceEEEEEecCCCCcEEEEEEEEeCC-------
Confidence            8999 899988753    33444556666555   433      777  599999999887653 55555432       


Q ss_pred             cCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEE
Q psy11568         77 IQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW  114 (116)
Q Consensus        77 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W  114 (116)
                       +.|.+..   ....+.+|+.+.|.|.+.  |.|.++|
T Consensus        99 -p~p~~~~---~~~~v~~G~~v~l~C~~~--p~~~i~W  130 (265)
T 2oz4_A           99 -PAPNVIL---TKPEVSEGTEVTVKCEAH--PRAKVTL  130 (265)
T ss_dssp             -CCCEEEE---SCSEEETTCEEEEEEECC--TTSEEEE
T ss_pred             -CCceeec---CCceecCCCcEEEEEEcc--CCCEEEE
Confidence             1144432   234577899999999998  9999999

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.24  E-value=1.4e-10  Score=72.60  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce---E--EEEEEEEeCcE---eeeec-cCCCceEecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI---L--SRFVHVKAGSV---VSLLD-IQGPLFRIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~---~--~~~~~v~~~~~---~~~~~-~~~p~~~~~~~~~~~~~~g~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..   .  ...|.|.....   ..... ...+.+...+ ....+.+|+++
T Consensus        87 ~L~I~~v~~~------DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~G~~v  159 (257)
T 3gkz_A           87 YLQLKSVSSE------DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSP-AIMSASPGEKV  159 (257)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSC-SEEEECTTCCE
T ss_pred             EEEECCCChh------hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCC-ceEEEeCCCcE
Confidence            6999999766      9999999999972211   1  12344432100   00000 0113444444 77889999999


Q ss_pred             EEEeeecCcCCc-eeEEe
Q psy11568         99 RLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        99 ~l~C~~~g~P~p-~i~W~  115 (116)
                      .|.|.+.+.|.| .+.|+
T Consensus       160 ~L~C~~~~~~~~~~v~W~  177 (257)
T 3gkz_A          160 TLTCSASSSVSSSHLYWY  177 (257)
T ss_dssp             EEEEEESSCCCGGGEEEE
T ss_pred             EEEEEEccCccceEEEEE
Confidence            999999999888 99996

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.24  E-value=2.5e-11  Score=73.86  Aligned_cols=74  Identities=16%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|...      .. .|.+...+ ....+..|+.+.|.|.+.
T Consensus        72 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~-~p~v~~~~-~~~~~~~~~~v~l~C~~~  137 (213)
T 3r06_A           72 SFTISSLESE------DIGSYYCQQYYNYPWTFGPGTKLEIKRA------DA-KPTVSIFP-PSSEQLGTGSATLVCFVN  137 (213)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSSSSCEECCCEEEEECCC------CB-CCEEEEEC-CCHHHHTTTEEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEecccCCceEEcCCceEEEecc------CC-CceeeeeC-CCceecCCCCcEEEEEEe
Confidence            7999999766      999999999998654442  33444221      11 26665554 333445688899999999


Q ss_pred             CcCC--ceeEEe
Q psy11568        106 GSPT--PKIEWL  115 (116)
Q Consensus       106 g~P~--p~i~W~  115 (116)
                      |.|+  +.++|+
T Consensus       138 g~~p~~~~v~W~  149 (213)
T 3r06_A          138 NFYPKDINVKWK  149 (213)
T ss_dssp             EEBSSCEEEEEE
T ss_pred             eecCCceEEEEE
Confidence            8764  388997

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.24  E-value=8.1e-11  Score=75.72  Aligned_cols=97  Identities=12%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             cEEEEEccCCeeeeccccceEE---eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce-----E-EEEEEEEeCcEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA---LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-----L-SRFVHVKAGSVV   72 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~---~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-----~-~~~~~v~~~~~~   72 (116)
                      +.+.| +++|..+.........   ...+.|.|.++..+      |+|.|+|.|.|..|..     . ...|.|...   
T Consensus       147 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~---  216 (316)
T 3vh8_G          147 EHFFL-HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLA------LAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP---  216 (316)
T ss_dssp             SEEEE-EETTCCSCCEEEECEEETTEEEEEEEECSCCGG------GCEEEEEEEECTTCTTBCCCCCCCEEEEEECS---
T ss_pred             cEEEE-EECCCccccceeeeeecCCCceEEEEECCCChh------hCceEEEEEecCCCCccccCCCCCEEEEecCC---
Confidence            57889 8887766421111111   12347999999766      9999999999997742     1 234444421   


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                         .. .|.+...+ .. .+.+|+++.|.|.+. .|.+.+.|+
T Consensus       217 ---~~-~p~i~~~~-~~-~v~~G~~v~L~C~~~-~~~~~~~W~  252 (316)
T 3vh8_G          217 ---YE-KPSLSAQP-GP-KVQAGESVTLSCSSR-SSYDMYHLS  252 (316)
T ss_dssp             ---SC-CCEEEEES-CS-CCCTTSCCEEEEEES-SCCSEEEEE
T ss_pred             ---CC-CCeEEeCC-CC-eecCCCcEEEEEECC-CCCcEEEEE
Confidence               01 25555554 22 567899999999997 478899996

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.24  E-value=8.8e-11  Score=81.02  Aligned_cols=70  Identities=11%  Similarity=0.218  Sum_probs=53.5

Q ss_pred             EEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec--
Q psy11568         29 LMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ--  105 (116)
Q Consensus        29 l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~--  105 (116)
                      |.|.++..+      |+|.|+|.| |..|.... ..|.|...         .|.+.. + ....+..|+++.|.|.+.  
T Consensus       408 L~I~~v~~~------D~G~Y~C~a-n~~g~~~~~~~l~V~~~---------~p~~~~-~-~~~~v~~G~~v~L~C~~~~~  469 (585)
T 2ocw_A          408 VILNQLTSR------DAGFYWCLT-NGDTLWRTTVEIKIIEG---------EPNLKV-P-GNVTAVLGETLKVPCHFPCK  469 (585)
T ss_pred             EEECCCChh------hCEEEEEcc-cCCCccceeEEEEEecC---------cccccc-C-CceeEecCCcEEEEEEecCC
Confidence            999999766      999999999 88776653 55655542         144332 3 667888999999999997  


Q ss_pred             --CcCCceeEEeC
Q psy11568        106 --GSPTPKIEWLI  116 (116)
Q Consensus       106 --g~P~p~i~W~~  116 (116)
                        |.|.|.++|+.
T Consensus       470 ~~~~p~~~v~W~k  482 (585)
T 2ocw_A          470 FSSYEKYWCKWNN  482 (585)
T ss_pred             CCCCccEEEEEee
Confidence              77899999974

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.24  E-value=1.4e-10  Score=72.78  Aligned_cols=80  Identities=15%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--E--EEEEEEEeCcEeeee--------ccCCCceEecCCCeEEEeCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--L--SRFVHVKAGSVVSLL--------DIQGPLFRIEPPYRFEFSNE   95 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~--~~~~~v~~~~~~~~~--------~~~~p~~~~~~~~~~~~~~g   95 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..  .  ...|.|..... ...        ....+.+...+ ....+.+|
T Consensus        80 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~~~~~~~~~~~~~~v~~~p-~~~~v~~G  151 (259)
T 3omz_A           80 RMILRNLIEN------DSGVYYCATWDQNYYKKLFGSGTSLVVTDKQG-SADDAKKDAAKKDGAQKVTQAQ-SSVSMPVR  151 (259)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECTTSSCEEECCCEEEEEEC-------------------CEEECCC-CCEEEETT
T ss_pred             EEEECCCCcc------cCEEEEEEEeeCCccccEECCCCEEEEecCCC-CccccccccccccCCeeeEEeC-CEEEEcCC
Confidence            6999999766      9999999999986632  1  13444443100 000        00013444444 67889999


Q ss_pred             CcEEEEeeecCc-CCceeEEe
Q psy11568         96 SGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        96 ~~~~l~C~~~g~-P~p~i~W~  115 (116)
                      +++.|.|.+.+. |.+.+.|+
T Consensus       152 ~~v~L~C~~~~~~~~~~v~W~  172 (259)
T 3omz_A          152 KAVTLNCLYETSWWSYYIFWY  172 (259)
T ss_dssp             CCEEECCEEECCCSSCEEEEE
T ss_pred             CCEEEEEECCCccCCceEEEe
Confidence            999999999885 88999996

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.23  E-value=2.9e-10  Score=69.09  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=49.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-----EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-----SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-----~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      +|.|.++..+      |+|.|.|.+.+..+...     ...|.|....      . .|.+.. + ..  +.+|+.+.|.|
T Consensus        83 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~------~-~p~i~~-~-~~--~~~G~~v~L~C  145 (214)
T 2zg1_A           83 SLSIGDARME------DTGSYFFRVERGRDVKYSYQQNKLNLEVTALI------E-KPDIHF-L-EP--LESGRPTRLSC  145 (214)
T ss_dssp             CEEECSCCGG------GCEEEEEEEEETTTEEEECCSSCEEEEEECCC------C-CCEEC----CC--CCTTCCEEEEE
T ss_pred             EEEEccCCHh------hCceEEEEEEcCCCceeeecCCceEEEEecCC------C-CCceec-C-cc--ccCCCeEEEEE
Confidence            7999999766      99999999998863322     2344444320      1 144432 2 22  56899999999


Q ss_pred             eecCc----CCceeEEeC
Q psy11568        103 AAQGS----PTPKIEWLI  116 (116)
Q Consensus       103 ~~~g~----P~p~i~W~~  116 (116)
                      .+.+.    |.|.++|+.
T Consensus       146 ~~~~~~~~~p~p~v~W~~  163 (214)
T 2zg1_A          146 SLPGSCEAGPPLTFSWTG  163 (214)
T ss_dssp             ECTTCCSCSSCCEEEEES
T ss_pred             EeccCCCCCCCceEEEeC
Confidence            99874    899999973

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.23  E-value=1.9e-10  Score=72.96  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcE-----eeeeccCCCceEecCCCeEEEeCCCcEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSV-----VSLLDIQGPLFRIEPPYRFEFSNESGGRL  100 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  100 (116)
                      .|.|.++..+      |+|.|.|.+.|..+...+  ..|.|.....     +... ...+..+..+ ....+.+|+++.|
T Consensus        83 ~L~I~~v~~~------DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~-~~p~~~~~~p-~~~~v~~G~~v~L  154 (276)
T 3auv_A           83 TLTISSLQPE------DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGG-GGSEVQLVES-GGGLVQPGGSLRL  154 (276)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCCCCCCEEEEC------------------CCEEEEE-CCEEECTTCCEEE
T ss_pred             EEEEccCChh------hCEEEEEEEecCCcccccCCEEEEEecCCCccccccccc-cCcceEEECC-CceEecCCCeEEE
Confidence            7999999766      999999999998654222  3444433100     0000 0102233344 5678899999999


Q ss_pred             EeeecCcC--CceeEEe
Q psy11568        101 DCAAQGSP--TPKIEWL  115 (116)
Q Consensus       101 ~C~~~g~P--~p~i~W~  115 (116)
                      .|.+.+.|  .|.+.|+
T Consensus       155 ~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A          155 SCAASGFTISDYWIHWV  171 (276)
T ss_dssp             EEEEESSCGGGSEEEEE
T ss_pred             EEEecCccCCCCEEEEE
Confidence            99999876  5899997

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.23  E-value=4.7e-11  Score=65.50  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             CcEEEEEccCCeeeeccccceE--Ee-e----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI--AL-S----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~--~~-~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||+++........  .. .    .+.|.|.++..+      |+|.|+|.|.|..|.... ..|.|.
T Consensus        30 ~P~i~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~V~   97 (103)
T 1wwb_X           30 KPALQW-FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM------NNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             CCEEEE-EETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGG------GCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             CCEEEE-EECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcc------cCEEEEEEEEeCCCcEeEEEEEEEC
Confidence            489999 999999875432211  11 1    224999999766      999999999999998774 444443

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.23  E-value=4.5e-10  Score=70.45  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--E---EEEEEEEeCcE----------e-eeeccCCCceEecCCCeEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--L---SRFVHVKAGSV----------V-SLLDIQGPLFRIEPPYRFE   91 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~---~~~~~v~~~~~----------~-~~~~~~~p~~~~~~~~~~~   91 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..  .   ...|.|.....          . ..... .|.+...+ ....
T Consensus        77 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~p-~~~~  148 (256)
T 3tf7_C           77 HLRKASVHRS------DSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGS-EAAVTQSP-RNKV  148 (256)
T ss_dssp             EEEESSCCGG------GCSEEEEEEECTTCTTCEEECCCEEEEEEC----------------------CCEEESC-SEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcC-ccEEEecC-CEEE
Confidence            6999999766      9999999999976421  1   13344443000          0 00001 15555555 7788


Q ss_pred             EeCCCcEEEEeeecCcCCceeEEe
Q psy11568         92 FSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        92 ~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.+|+++.|.|.+.+. .|.+.|+
T Consensus       149 v~~G~~v~L~C~~~~~-~~~v~W~  171 (256)
T 3tf7_C          149 TVTGENVTLSCRQTNS-HNYMYWY  171 (256)
T ss_dssp             EETTCCEEECEEECSC-CSEEEEE
T ss_pred             EeCCCcEEEEEEcCCC-ceEEEEE
Confidence            8899999999999887 7899996

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.23  E-value=1.1e-11  Score=76.27  Aligned_cols=100  Identities=17%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             cEEEEEccCCeeeeccccc-eEE------eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIA------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~------~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~   73 (116)
                      |.|+| +++|..+...... ...      ...+.|.|.++..+      |+|.|+|.+.|..+... ...+...    +.
T Consensus        45 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~g~Y~C~~~~~~~~~~~~~~v~~~----~~  113 (218)
T 2rgs_A           45 VQISW-FVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM------SGKEFKCKVNNKDLPSPIERTISKI----KG  113 (218)
T ss_dssp             EEEEE-EETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH------TTCCEEEEEEETTCSSCEEEEECCC----CC
T ss_pred             eEEEE-EECCccccCcccccccccCCCeEEEEEEEEEcHHHcC------CCCeEEEEEECCcCCCcceEEEeec----CC
Confidence            68999 8888776431110 001      11236889888665      99999999999876441 2222110    00


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeeecC-cCCc-eeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG-SPTP-KIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~  115 (116)
                       ...+ |.+...++... ...|+.+.|.|.+.| .|.| .++|+
T Consensus       114 -~~~~-P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~  154 (218)
T 2rgs_A          114 -LVRA-PQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEWT  154 (218)
T ss_dssp             -CCBC-CEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             -CCCC-CEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEEE
Confidence             0112 55544432221 135899999999999 5766 89996

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.23  E-value=3.2e-11  Score=63.99  Aligned_cols=49  Identities=14%  Similarity=0.236  Sum_probs=37.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|+| ++||+++...........++  .|.|.++..+      |+|.|+|.|.|..
T Consensus        24 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~   74 (84)
T 2lu7_A           24 GGPVRW-YKDGERLASQGRVQLEQAGARQVLRVQGARSG------DAGEYLCDAPQDS   74 (84)
T ss_dssp             STTCEE-EETTEECCCCSSEEEEECSSCEEEEESSCSST------TCEEEEEECTTTC
T ss_pred             CcEEEE-EECCEEccccccEEEeecCCeEEEEecCCCCc------ccEEEEEEECCEE
Confidence            377999 99999997644444444433  6999999766      9999999997764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.23  E-value=2.1e-10  Score=71.85  Aligned_cols=80  Identities=15%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC-----------CCceE--EEEEEEEeCcEeeee------ccCCCceEecCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE-----------AGVIL--SRFVHVKAGSVVSLL------DIQGPLFRIEPPY   88 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~-----------~g~~~--~~~~~v~~~~~~~~~------~~~~p~~~~~~~~   88 (116)
                      .|.|.++..+      |+|.|.|.+.|.           .....  ...|.|..... ...      ....+.+...+ .
T Consensus        86 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~~~~~~~~~~~~~~~~~-~  157 (256)
T 3juy_B           86 YMELRSLRSA------DTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGG-GSGGGGSGGGGSEIVLTQAP-G  157 (256)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC-----------CCCCCCEEEEC-S
T ss_pred             EEEECCCCcc------cCEEEEEeEEeccccccccccccceeEECCceEEeecCCcc-cccccccCCCcceeEEEecC-C
Confidence            5999999766      999999999997           11111  13344443100 000      00014455555 7


Q ss_pred             eEEEeCCCcEEEEeeecCcCC-ceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQGSPT-PKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g~P~-p~i~W~  115 (116)
                      ...+.+|+++.|.|.+.+.|. |.+.|+
T Consensus       158 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~  185 (256)
T 3juy_B          158 TLSLSPGERATFSCRSSHSIRSRRVAWY  185 (256)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCCEEEE
T ss_pred             eEEEeCCCCEEEEEEECCCcCCeeEEEE
Confidence            888999999999999999886 899996

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.22  E-value=9.5e-11  Score=63.10  Aligned_cols=59  Identities=20%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.++| +++|.++..  ..+....++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|..
T Consensus        28 ~p~v~W-~k~g~~~~~--~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~   87 (95)
T 4hwu_A           28 AAVISW-TKDGVHLGP--NNRTVLIGEYLQIKGATPR------DSGLYACTAARTVDSETWIFMVNVTD   87 (95)
T ss_dssp             TCEEEE-EETTEEECC--CSSEEEETTEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CCEEEE-EECCEECCC--CceEEEeCCEEEECcCCcc------cCEEEEEEEccCCCcEEEEEEEEEeC
Confidence            378999 899998864  3345566789999999766      999999999999986653 4455443

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.22  E-value=1.2e-10  Score=62.95  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=44.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|.| ++++..+...........++  .|.|.++..+      |+|.|+|.+.|..|...+ ..|.|
T Consensus        31 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           31 STQVTW-YFGVRQLENSEKYEITYEDGVAILYVKDITKL------DDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             TCEEEE-EETTEECCSSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCEEEE-EECCEECcCCCCEEEEEcCCeEEEEEecCChh------hCeEEEEEEECCCCeEeEEEEEEE
Confidence            378999 89998886544433434555  8999999766      999999999999998775 44444

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.21  E-value=2.9e-10  Score=68.19  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         25 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        25 ~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .+++|.|.+++.+      |+|.|.|.+.+.. ... ...|.|..+       ...|.+..         .+..+.|.|.
T Consensus        67 ~~~sL~I~~v~~~------D~G~Y~C~v~~~~-~~~~~~~L~V~~~-------~~~P~i~~---------~~~~v~L~C~  123 (180)
T 2dru_A           67 TNGALRIYNVSKE------DRGDYYMRMLHET-EDQWKITMEVYEM-------VSKPMIYW---------ECSNATLTCE  123 (180)
T ss_dssp             TTCCEEECSCCGG------GCEEEEEEEESSS-EEEEEEEEEEECC-------CCCCEEEE---------EGGGTEEEEE
T ss_pred             CCccEEEcCCCHH------HCeEEEEEEEcCC-eEEEEEEEEEECC-------CCCCEEEe---------cCCCEEEEEE
Confidence            4568999999766      9999999998776 222 244544432       01133322         3467999999


Q ss_pred             e-cCcCCceeEEe
Q psy11568        104 A-QGSPTPKIEWL  115 (116)
Q Consensus       104 ~-~g~P~p~i~W~  115 (116)
                      + .| |.|.++|+
T Consensus       124 ~~~g-p~p~i~W~  135 (180)
T 2dru_A          124 VLEG-TDVELKLY  135 (180)
T ss_dssp             CSSC-TTCEEEEE
T ss_pred             eCCC-CCCEEEEE
Confidence            9 66 99999997

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.21  E-value=8.2e-11  Score=63.44  Aligned_cols=56  Identities=18%  Similarity=0.283  Sum_probs=43.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      +|.|.| +++|..+..  ..++...++.|.|.++..+      |+|.|.|.|.|..|.... ..|.
T Consensus        37 pp~i~W-~k~g~~~~~--~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~g~~~~~~~l~   93 (95)
T 2ckn_A           37 VQSINW-LRDGVQLVE--SNRTRITGEEVEVRDSIPA------DSGLYACVTSSPSGSDTTYFSVN   93 (95)
T ss_dssp             CCEEEE-EBTTBCCCC--CSSEEECSSEEEESSCCGG------GSEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCceEE-EECCEecCC--CCCEEEeCCEEEECCCChH------HCEEEEEEeccCCCcEEEEEEEE
Confidence            368999 889988764  2345556789999999766      999999999999987653 4343

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.21  E-value=3.1e-11  Score=85.43  Aligned_cols=97  Identities=20%  Similarity=0.265  Sum_probs=36.6

Q ss_pred             cEEEEEccCCeeeeccccc----------eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDL----------RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGS   70 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~----------~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~   70 (116)
                      +.+.| +++|..+......          ........|.|.++..+      |+|.|+|.+.|..|... ...|.|... 
T Consensus       256 ~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~~~~~~~~~~~~l~V~~~-  327 (772)
T 3v2a_R          256 IDFNW-EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS------DQGLYTCAASSGLMTKKNSTFVRVHEK-  327 (772)
T ss_dssp             CEEEE-ECC--------CEEEEC-----CCCEEEEEEEEESSCCST------TCSEEEEEEECSSCEEEEEEEEEEECC-
T ss_pred             eeEEE-ecCCccCCCceeeeccccccccccceEEEEEEEECcCCcC------CCeEEEEEEEcCCcceeEEEEEEEeCC-
Confidence            47899 7787765421111          11112337999999766      99999999999987654 345555543 


Q ss_pred             EeeeeccCCCceEecC--CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         71 VVSLLDIQGPLFRIEP--PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        71 ~~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                               |.+...+  +....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus       328 ---------p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~  365 (772)
T 3v2a_R          328 ---------PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWY  365 (772)
T ss_dssp             ---------CC------------------------------------
T ss_pred             ---------CeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEE
Confidence                     4333222  24566788999999999999999999996

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.21  E-value=1.6e-10  Score=71.91  Aligned_cols=80  Identities=14%  Similarity=0.092  Sum_probs=50.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcE----eeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSV----VSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~----~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.|..+...+  ..|.|..+..    +...... +..+..+ ....+.+|+++.|.
T Consensus        72 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~-~~~~~~~-~~~~v~~G~~v~L~  143 (242)
T 2znx_A           72 TLSINSVETE------DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGS-DIQLQES-GPSLVKPSQTLSLT  143 (242)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEEC----------------CCEEEEE-CCSEECTTSCEEEE
T ss_pred             EEEECCCChH------HCEEEEEeEecCCceEECCCEEEEEcCCCCCCccccccccc-ceeeecC-CcceecCCCeEEEE
Confidence            7999999766      999999999998654332  3444443200    0000000 2233333 22357899999999


Q ss_pred             eeecCcC--CceeEEe
Q psy11568        102 CAAQGSP--TPKIEWL  115 (116)
Q Consensus       102 C~~~g~P--~p~i~W~  115 (116)
                      |.+.|.|  .|.+.|+
T Consensus       144 C~~~g~~~~~~~v~W~  159 (242)
T 2znx_A          144 CSVTGDSITSDYXSXI  159 (242)
T ss_dssp             EEEESSCGGGSCEEEE
T ss_pred             EEEEccccCCcceeeE
Confidence            9999876  5789997

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.20  E-value=1.5e-10  Score=63.02  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|+| +++|..+...........++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        37 ~p~i~W-~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           37 TAEVKW-YHNGVELQESSKIHYTNTSGVLTLEILDCHTD------DSGTYRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEE-EECCEECCCCCCEEEEECCCEEEEEEcCCCcc------cCEEEEEEEEeCCCcEEEEEEEEEEC
Confidence            478999 99999886544333333333  6999999766      999999999999998764 5555543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.20  E-value=3.4e-11  Score=64.65  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=39.9

Q ss_pred             CcEEEEEccCC--eeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDN--TVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g--~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.|+| +++|  .++...  .......  ..|.|.++..+      |+|.|+|.|.|..|.... ..|.
T Consensus        31 ~p~i~W-~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~   91 (93)
T 1wit_A           31 DPTATW-TVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRA------DSGNYKLKVKNELGEDEAIFEVI   91 (93)
T ss_dssp             SCEEEE-ECSTTTCBCSTT--SEEEEETTEEEEECTTBCGG------GCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCEEEE-EECCCCcccCCc--EEEEecCCEEEEEECCCChh------cCEEEEEEEEcCCCeEEEEEEEE
Confidence            478999 8888  776532  2222222  36999999766      999999999999997653 4343

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.20  E-value=6.8e-11  Score=72.14  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=50.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc---eE---EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV---IL---SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~---~~---~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.|..|.   ..   ...|.|....     .. .|.+...+ .......|+.+.|.
T Consensus        76 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-----~~-~P~~~~~~-~~~~~~~~~~v~L~  142 (218)
T 3s96_B           76 YLSISNIQPE------DEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP-----KS-TPTLTVFP-PSSEELKENKATLV  142 (218)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEEEETTEEEEEECCCEEEEEESCC-----CB-CCEEEEEC-CCHHHHHTTEEEEE
T ss_pred             EEEEccCCcc------cCEEEEEEEecCCCCceeEEEcCcEEEEEecCC-----CC-CceEEeeC-CCcccccCCcEEEE
Confidence            6999999766      999999999998762   11   1344444210     01 25555444 22333457899999


Q ss_pred             eeecC-cCCc-eeEEe
Q psy11568        102 CAAQG-SPTP-KIEWL  115 (116)
Q Consensus       102 C~~~g-~P~p-~i~W~  115 (116)
                      |.+.| .|.| .++|+
T Consensus       143 C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B          143 CLISNFSPSGVTVAWK  158 (218)
T ss_dssp             EEEEEEBSSCCEEEEE
T ss_pred             EEECcccCCCeEEEEE
Confidence            99998 5777 89997

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=7.3e-11  Score=64.05  Aligned_cols=61  Identities=15%  Similarity=0.291  Sum_probs=44.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.+.| +++|..+...........++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|..
T Consensus        37 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           37 LPVISW-LKEGFTFPGRDPRATIQEQGTLQIKNLRIS------DTGTYTCVATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             CCEEEE-EESSSEESSSCSSCEECTTCCEEEESCCTT------TCCEEEEEEECSSCCCBCCEEEEEES
T ss_pred             CCEEEE-EECCEECCCCCCCEEEcCCCEEEEccCCcc------cCEEEEEEEEcCCCCEEEEEEEEEec
Confidence            378999 888888763222223345668999999766      999999999999987763 5555543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.20  E-value=2e-10  Score=73.50  Aligned_cols=75  Identities=20%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCC-CceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA  104 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  104 (116)
                      .+|.|.++..+      |+|.|+|.+.|.. |.... ..+.+.....        +.+...+ .......|+.+.|.|.+
T Consensus        74 ~sL~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~--------~~~~~~~-~~~~~~~~~~~~l~C~~  138 (308)
T 4fom_A           74 ATITLHNIGFS------DSGKYICKAVTFPLGNAQSSTTVTVLVEPT--------VSLIKGP-DSLIDGGNETVAAICIA  138 (308)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEETTTEEEEEEEEEEEEBCCE--------EEEEECS-SCCCTTCSCEEEEEEEE
T ss_pred             eEEEEccCCHH------HCEEEEEEEeeCCCcceeeeeEEEeeeccc--------ccccccc-ceeEEcCCceEEEEEEe
Confidence            46999999766      9999999998874 43332 3344443210        1222222 34444568899999975


Q ss_pred             -cCcCCceeEEeC
Q psy11568        105 -QGSPTPKIEWLI  116 (116)
Q Consensus       105 -~g~P~p~i~W~~  116 (116)
                       .|.|.|.++|+.
T Consensus       139 ~~g~P~~~i~W~~  151 (308)
T 4fom_A          139 ATGKPVAHIDWEG  151 (308)
T ss_dssp             EEEBSCCEEEECC
T ss_pred             cCCcCCceEEEEE
Confidence             689999999973

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.20  E-value=1.9e-10  Score=62.15  Aligned_cols=60  Identities=22%  Similarity=0.368  Sum_probs=43.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.+.| +++|..+....+......++  .|.|.++..+      |+|.|+|.+.|..|.... ..|.|.
T Consensus        35 ~p~v~W-~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           35 RPTAIW-TKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS------DSGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             CCEEEE-EETTEECCSSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEE-EECCEECcCCCCEEEEEeCCEEEEEECCCCcc------cCEEEEEEEEeCCCcEeEEEEEEEE
Confidence            378999 88999886543333333333  6999999766      999999999999987764 445443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1e-10  Score=63.92  Aligned_cols=60  Identities=15%  Similarity=0.150  Sum_probs=42.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~   68 (116)
                      .|.|+| ++||.++....+.+....+.  .|.|.++..+      |+|.|+|.|.|.. ...+..|.|..
T Consensus        34 ~p~v~W-~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~-~~~~a~L~V~~   95 (100)
T 2yuz_A           34 NIPGKW-TKNGLPVQESDRLKVVQKGRIHKLVIANALTE------DEGDYVFAPDAYN-VTLPAKVHVIS   95 (100)
T ss_dssp             CCCEEE-EETTEECCCCSSEEEEECSSEEEEEESSCCGG------GCSEEEEEESSSC-CCEEEEEEEEC
T ss_pred             CCeEEE-EECCEECCCCCcEEEEEeCCEEEEEECCCChh------hCEEEEEEEcCCC-eeEEEEEEEeC
Confidence            378999 99999987544434333333  6999999766      9999999999982 22235555554

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.19  E-value=9.5e-11  Score=71.82  Aligned_cols=75  Identities=20%  Similarity=0.375  Sum_probs=51.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce-E---EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L---SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~---~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.. .   ...|.|...     ... .|.+...++. ..+.+|+.+.|.|.
T Consensus        82 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~i~~~~~~-~~~~~g~~v~L~C~  148 (220)
T 1pz5_B           82 YLQMNNLRAE------DTGIYYCTRGGAVGAMDYWGQGTSVTVSSA-----TTT-APSVYPLVPG-CSDTSGSSVTLGCL  148 (220)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECTTSSEEEECCCEEEEECSS-----CCB-CCEEEEECCC-SCCSCSSSEEEEEE
T ss_pred             EEEEccCCHH------HCEEEEEEEecCCcccceECCCEEEEEccC-----CCC-CCeEEEcccc-cccCCCCcEEEEEE
Confidence            7999999766      9999999999986432 1   133444321     001 2554443312 23467999999999


Q ss_pred             ecCc-CCc-eeEEe
Q psy11568        104 AQGS-PTP-KIEWL  115 (116)
Q Consensus       104 ~~g~-P~p-~i~W~  115 (116)
                      +.|. |.| .++|+
T Consensus       149 ~~g~~P~p~~v~W~  162 (220)
T 1pz5_B          149 VKGYFPEPVTVKWN  162 (220)
T ss_dssp             EEEEBSSCCEEEEG
T ss_pred             EEEEeCCCeEEEEe
Confidence            9998 989 99996

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.19  E-value=2e-10  Score=62.22  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=43.9

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|.| +++|.++......+.. ..++  .|.|.++..+      |+|.|+|.+.|..|.... ..|.|.
T Consensus        34 ~p~v~W-~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           34 APDVSW-YLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRAS------DAGAYACVAKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             CCEEEE-EETTEEECCCSSSCEEEETTTEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEE-EECCEECcCCCcEEEEEcCCCeEEEEECCCCcc------cCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            378999 8999988754333333 3344  7999999766      999999999999988663 455544

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.19  E-value=1.5e-10  Score=62.55  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=43.6

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|.| +++|..+......... ..++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|.
T Consensus        34 ~p~v~W-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           34 DPECEW-YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE------DSASIMVKAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEE-EECCEECCCCCCEEEEEcCCCEEEEEECCCCcC------CCEEEEEEEEECCCcEEEEEEEEEe
Confidence            378999 9999988753332222 2333  6999999766      999999999999987774 445443

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.18  E-value=7.3e-10  Score=69.98  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE--EEEEEEEeCcE--------eeeeccCCCc-eEecCCCeEEEeCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHVKAGSV--------VSLLDIQGPL-FRIEPPYRFEFSNES   96 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~--~~~~~v~~~~~--------~~~~~~~~p~-~~~~~~~~~~~~~g~   96 (116)
                      .|.|.++..+      |+|.|.|.+.+..+...  ...|.|..+..        ........|. .+..+ ....+.+|+
T Consensus        82 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~  154 (264)
T 2gjj_A           82 TLTIGSVKAE------DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQS-GPEVVKTGA  154 (264)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEEC-CCEEECTTC
T ss_pred             EEEECCCCHH------HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCC-CCEEEcCCC
Confidence            7999999766      99999999999865332  23455543200        0000000022 22333 234688999


Q ss_pred             cEEEEeeecCcCC--ceeEEe
Q psy11568         97 GGRLDCAAQGSPT--PKIEWL  115 (116)
Q Consensus        97 ~~~l~C~~~g~P~--p~i~W~  115 (116)
                      ++.|.|.+.+.|.  +.+.|+
T Consensus       155 ~v~L~C~~~~~~~~~~~v~W~  175 (264)
T 2gjj_A          155 SVKISCKASGYSFTGYFINWV  175 (264)
T ss_dssp             CEEEEEEEESSCGGGSEEEEE
T ss_pred             cEEEEEEEeCCccCCeEEEEE
Confidence            9999999998874  899997

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.18  E-value=5e-11  Score=73.50  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=50.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.+..+....  ..+.|...      .. .|.+...+ ....+..|+.+.|.|.+.
T Consensus        95 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~-~p~v~~~~-~~~~~~~g~~v~l~C~~~  160 (237)
T 3sob_L           95 TLTISSLQPE------DFATYYCQQSYTTPPTFGQGTKVEIKRT------VA-APSVFIFP-PSDEQLKSGTASVVCLLN  160 (237)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEEECC------CB-CCEEEEEC-CCHHHHHHTEEEEEEEEE
T ss_pred             EEEECCCChh------hCeEEEEeeccCCceEEcCcEEEEEecC------CC-CCceEEeC-CChhhccCCceEEEEEEc
Confidence            6999999766      999999999988754332  34444321      11 25555444 222334588899999999


Q ss_pred             Cc-C-CceeEEe
Q psy11568        106 GS-P-TPKIEWL  115 (116)
Q Consensus       106 g~-P-~p~i~W~  115 (116)
                      |. | .|.++|+
T Consensus       161 ~~~p~~~~v~W~  172 (237)
T 3sob_L          161 NFYPREAKVQWK  172 (237)
T ss_dssp             EEBSSCCEEEEE
T ss_pred             ccCCCceEEEEE
Confidence            84 4 5899997

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.18  E-value=4.8e-11  Score=75.65  Aligned_cols=94  Identities=11%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             EEEEccCCeeeeccccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE--EEEEEEEeCcEeeeecc
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHVKAGSVVSLLDI   77 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~--~~~~~v~~~~~~~~~~~   77 (116)
                      |+| +++|..+..  . .....    .+.|.|.++..+      |+|.|+|.+.|..|...  +..+.|...      ..
T Consensus        28 v~W-~~~~~~~~~--~-~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~g~~~~~~~~~~v~v~------~p   91 (289)
T 3mjg_X           28 VVW-ERMSQEPPQ--E-MAKAQDGTFSSVLTLTNLTGL------DTGEYFCTHNDSRGLETDERKRLYIFVP------DP   91 (289)
T ss_dssp             CEE-EBTTBCCSE--E-EEECTTSCEEEEEEECSCCGG------GCEEEEEECCC------CCCEEEEEECC------CT
T ss_pred             EEE-ECCCCCccc--c-eeccCCCceeEEEEEccCChh------hCEEEEEEEcccCCCCcCcEEeEEEEEE------CC
Confidence            789 888887631  1 11111    237999999766      99999999999887632  233333221      00


Q ss_pred             CCCceEecCCC--eEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPY--RFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~--~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       ...++...+.  ...+.+|+.+.|.|.+. .|.|.++|+
T Consensus        92 -~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~  129 (289)
T 3mjg_X           92 -TVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH  129 (289)
T ss_dssp             -TCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEE
T ss_pred             -CcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEE
Confidence             0112111111  26788899999999998 788888885

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.18  E-value=1.7e-11  Score=74.82  Aligned_cols=99  Identities=17%  Similarity=0.235  Sum_probs=58.8

Q ss_pred             EEEEEccCCeeeeccc-cceEEe------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeee
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIAL------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSL   74 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~   74 (116)
                      .|+| ++++..+.... ......      ....|.|.++..+      |+|.|+|.+.|..+... ...+.+..    . 
T Consensus        38 ~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~~~~~~~~~~v~~~~----~-  105 (207)
T 2vol_A           38 QFSW-FVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWL------NGKEFKCRVNSAAFPAPIEKTISKTK----G-  105 (207)
T ss_dssp             EEEE-EETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHH------TTCCEEEEEECTTCSSCEEEEECCCC----C-
T ss_pred             EEEE-EECCccccccccCCCcCcCCCcEEEEEEEEEehhHcC------CCCEEEEEEEccCCCCceEEEeccCC----C-
Confidence            8999 77777664211 000011      1236888888665      99999999999987532 22221100    0 


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCc-CC-ceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PT-PKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~  115 (116)
                      ...+ |.+...+... ....|+.+.|.|.+.|. |. +.++|+
T Consensus       106 ~~~~-P~v~~~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~  146 (207)
T 2vol_A          106 RPKA-PQVYTLPPPK-EQMAKDKVSLTCMITDFFPEDITVEWE  146 (207)
T ss_dssp             CCBC-CEEEEECCCT-GGGSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCcC-CeEEEeCCCH-HHhcCCceEEEEEEeeEECCCCEEEEE
Confidence            0112 5554443221 12358999999999985 54 389996

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.18  E-value=1.3e-10  Score=74.70  Aligned_cols=95  Identities=14%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc----eEE--EEEEEEeCcEeeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV----ILS--RFVHVKAGSVVSLL   75 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~----~~~--~~~~v~~~~~~~~~   75 (116)
                      |.+.| +++|..+...  ......++.|.|.++..+      |+|.|+|.+.|..+.    ..+  ..|.|...      
T Consensus        52 ~~~~W-~k~g~~~~~~--~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~------  116 (316)
T 3vh8_G           52 NNFML-YKEDRIHIPI--FHGRIFQESFNMSPVTTA------HAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGN------  116 (316)
T ss_dssp             CSEEE-EESSCSSSCH--HHHCCBSSCEEECSCCGG------GCEEEEEEEBCSSSSSSBCCCCCCEEEEEECS------
T ss_pred             ceEEE-EeCCCcccee--ecCCcceEEEEECCCCcc------cCeEEEEEEEcCCCCcceecCCCcEEEEEecC------
Confidence            67899 8888765421  111224568999999766      999999999864321    112  34444331      


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                       ...|.+...+ ... +.+|+++.|.|.+. .+.+.+.|+
T Consensus       117 -~~~p~~~~~~-~~~-v~~G~~v~L~C~~~-~~~~~~~w~  152 (316)
T 3vh8_G          117 -HRKPSLLAHP-GPL-VKSGERVILQCWSD-IMFEHFFLH  152 (316)
T ss_dssp             -SCCCEEEEES-CSE-EETTCCEEEEEEES-SCCSEEEEE
T ss_pred             -CCCCeEEecC-CCc-cCCCCeEEEEEcCC-CCCcEEEEE
Confidence             1125665555 333 78899999999995 456678885

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.18  E-value=4.1e-10  Score=71.08  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCC--------------ceEecCCCeEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGP--------------LFRIEPPYRFE   91 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p--------------~~~~~~~~~~~   91 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|..... .......|              ..+..+ ....
T Consensus        91 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~-~~~p~~pp~~~~~~~~~~~~~~v~~~~~-~~~~  162 (268)
T 1x9q_A           91 TLKINRVEAE------DLGVYFCSQSTHVPWTFGGGTKLEIKSSAD-DAKKDAAKKDDAKKDDAKKDGGVKLDET-GGGL  162 (268)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEC-------------------------CGGGCEEEEE-CCEE
T ss_pred             EEEECCCChh------HCEEEEEEEecCCCceEcCCEEEEEccCcc-CCCccccccccccccccccccceEEECC-CceE
Confidence            7999999766      999999999998653321  3344432100 00000001              122333 4568


Q ss_pred             EeCCCcEEEEeeecCcCC--ceeEEe
Q psy11568         92 FSNESGGRLDCAAQGSPT--PKIEWL  115 (116)
Q Consensus        92 ~~~g~~~~l~C~~~g~P~--p~i~W~  115 (116)
                      +.+|+++.|.|.+.+.|.  +.+.|+
T Consensus       163 v~~G~~v~L~C~~~~~~~~~~~v~W~  188 (268)
T 1x9q_A          163 VQPGGAMKLSCVTSGFTFGHYWMNWV  188 (268)
T ss_dssp             ECTTCCEEEEEEEESSCGGGCEEEEE
T ss_pred             ecCCCcEEEEEEecCccccccEEEEE
Confidence            889999999999998764  889996

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.17  E-value=3e-11  Score=78.76  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=50.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|.|.+.|..+... ...|.|....     .. .|.+...++ ...+..|+.+.|.|.+.|
T Consensus        80 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~l~V~~~~-----~~-~P~i~~~~~-~~~~~~g~~v~L~C~~~g  146 (344)
T 1za6_B           80 YVELSSLRSE------DTAVYFCTRSLNMAYWGQGTLVTVSSAS-----TK-GPSVFPLAP-SSKSTSGGTAALGCLVKD  146 (344)
T ss_dssp             EEEECSCCGG------GCEEEEEEETTTTCEECCCEEEEECSSC-----CB-CCEEEEECC-SCTTTSSSEEEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEecCcceecCcEEEEEecCC-----CC-CCeEEEccc-cccccCCCcEEEEEEEee
Confidence            7999999766      99999999999653322 2344444210     01 144443331 223467999999999999


Q ss_pred             c-CC-ceeEEe
Q psy11568        107 S-PT-PKIEWL  115 (116)
Q Consensus       107 ~-P~-p~i~W~  115 (116)
                      . |. |.++|+
T Consensus       147 ~~P~~~~v~W~  157 (344)
T 1za6_B          147 YFPEPVTVSWN  157 (344)
T ss_dssp             EBSSCCCEEET
T ss_pred             EECCCeEEEEe
Confidence            7 64 799996

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.17  E-value=2.8e-11  Score=81.22  Aligned_cols=100  Identities=15%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             cEEEEEccCCeeeeccccc-eEEe------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIAL------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~~------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~   73 (116)
                      +.|+| +++|..+...... ....      ..+.|.|.++..+      |+|.|+|.|.|..|... ...+.+..     
T Consensus       274 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~n~~~~~~~~~~v~~~~-----  341 (444)
T 1igt_B          274 VQISW-FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM------SGKEFKCKVNNKDLPAPIERTISKPK-----  341 (444)
T ss_dssp             CEEEE-EETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH------TTCEEEEEEECTTCSSCEEEEEECCC-----
T ss_pred             eEEEE-EECCccccCcccccceeCCCCcEEEEEEEEEcHHHhc------cCCcEEEEEEcCCCCCceEEEEeccC-----
Confidence            48999 8888887532111 1111      1236999999666      99999999999987653 22222100     


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeeecC-cCCc-eeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG-SPTP-KIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~  115 (116)
                      ....+ |.+...++....+ .+..+.|.|.+.| .|.| .++|+
T Consensus       342 ~~~~~-P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~  383 (444)
T 1igt_B          342 GSVRA-PQVYVLPPPEEEM-TKKQVTLTCMVTDFMPEDIYVEWT  383 (444)
T ss_dssp             CCCBC-CEEEEECCCGGGT-TSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCCCC-CEEEEeCCChHHc-cCCeEEEEEEEEeeeCCCCEEEEE
Confidence            00112 5554443222222 3445999999999 4666 89997

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=3.7e-10  Score=63.11  Aligned_cols=60  Identities=10%  Similarity=0.086  Sum_probs=43.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|+| +++|..+.. .+......++  .|.|.++..+      |+|.|+|.|.|..|.... ..|.|..
T Consensus        53 ~p~i~W-~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A           53 RPQVVW-TKGGAPLDT-SRVHVRTSDFDTVFFVRQAARS------DSGEYELSVQIENMKDTATIRIRVVE  115 (118)
T ss_dssp             CCEEEE-EETTEECCC-SSCEEEECSSEEEEEESSCCTT------TCEEEEEEEECSSCEECCEEEEEEEC
T ss_pred             CCEEEE-EECCEECCC-CcEEEEECCCeEEEEECCCChh------cCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            378999 899998862 2333333333  4999999766      999999999999996653 5555543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.16  E-value=2.2e-10  Score=72.59  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=46.8

Q ss_pred             CceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         44 HSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        44 d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |+|.|+|.|.|..+...+  ..+.+...       . .|.+...+ ....+.+|+++.|.|.+.|.|.|.++|+
T Consensus       152 d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-------~-~p~i~~~~-~~~~v~~G~~v~L~C~~~g~p~p~v~W~  216 (289)
T 3mjg_X          152 EDRSYICKTTIGDREVDSDAYYVYRLQV-------S-SINVSVNA-VQTVVRQGENITLMCIVIGNEVVNFEWT  216 (289)
T ss_dssp             CSSEEEEEEEETTEEEECCCEEEEECCC-------C-CCCCEEEE-SCSEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred             cCcEEEEEEEeCCceeeeeeEEEEecCC-------C-CCCcEEeC-CcceeEcCCCEEEEEEECCCCCcceEEE
Confidence            899999999988765554  33333321       1 25555554 3456889999999999999999999997

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.16  E-value=2.3e-10  Score=61.82  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=41.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|.| +++|..+...........++   .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|
T Consensus        34 ~p~v~W-~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           34 KPVVSW-LRNRQPVRPDQRRFAEEAEGGLCRLRILAAERG------DAGFYTCKAVNEYGARQCEARLEV   96 (99)
T ss_dssp             CCEEEE-EETTEECCCBTTEEEEECGGGEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEE-EECCEECCCCCCEEEEECCCCEEEEEEccCCcC------CCEEEEEEEEECCCceeEEEEEEE
Confidence            378999 89998886432211122222   5999999766      999999999999987764 44444

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.16  E-value=9.7e-11  Score=71.52  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-ceE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-VIL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA  104 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-~~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  104 (116)
                      .|.|.++..+      |+|.|.|.+.|..+ ...  ...|.|...      .. .|.+...++... ...|+.+.|.|.+
T Consensus        73 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~------~~-~P~v~~~~~~~~-~~~g~~v~L~C~~  138 (216)
T 2xzc_L           73 TLGITGLQTG------DEADYYCGTWDSSLNPVFGGGTKLEIKRT------VA-APSVFIFPPSDE-QLKSGTASVVCLL  138 (216)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECTTSCEEEBCCEEEEECCC------CB-CCEEEEECCCHH-HHHTTEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEEeCCCcceECCCEEEEEcCC------CC-CCceEEeCCChh-hccCCcEEEEEEE
Confidence            7999999766      99999999999876 222  133444321      01 255554332222 2358899999999


Q ss_pred             cC-cCCc-eeEEe
Q psy11568        105 QG-SPTP-KIEWL  115 (116)
Q Consensus       105 ~g-~P~p-~i~W~  115 (116)
                      .| .|.| .++|+
T Consensus       139 ~g~~P~~~~v~W~  151 (216)
T 2xzc_L          139 NNFYPREAKVQWK  151 (216)
T ss_dssp             EEEBSSCCEEEEE
T ss_pred             EeEcCCceEEEEE
Confidence            98 4555 89997

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.16  E-value=8.5e-11  Score=65.76  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=41.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEe------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|+.+..........      ..+.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        34 ~p~i~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~   93 (118)
T 1wwc_A           34 PPTLHW-LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY------NNGNYTLIAKNPLGTANQ   93 (118)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGG------GCEEEEEEEEETTEEEEE
T ss_pred             CCeEEE-EECCEECCCCCceeEEEeccCccccEEEEECCCChh------cCEEEEEEEECCCCeEee
Confidence            478999 99999887543333222      3447999999766      999999999999998764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.15  E-value=1e-10  Score=64.23  Aligned_cols=60  Identities=17%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      |.+.| +++|..+...........++.|.|.++..+      |+|.|+|.+.|..|...+ ..|.|..
T Consensus        40 p~i~W-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           40 PQIMW-FKDNETLVEDSGIVLKDGNRNLTIRRVRKE------DEGLYTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             CCEEE-EESSSBCCCBTTEEEETTTTEEEECSCCGG------GCEEEEEEEC----CEEEEEEEEEEC
T ss_pred             CeEEE-EECCeEcccCCCeEEeCCCcEEEEeecCcc------cCEEEEEEEEeCCCceEEEEEEEEeC
Confidence            67999 888887764333333334568999999766      999999999999988774 5565554

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.15  E-value=2.6e-10  Score=71.46  Aligned_cols=97  Identities=12%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             cEEEEEccCCeeeeccc-cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce-EE--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRDNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~~--~~~~v~~~~~~~~~~~   77 (116)
                      +.+.| +|+|..+.... .......++.|.|.++..+      |+|.|+|.+.|..+.. .+  ..|.|...       .
T Consensus        35 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~-------~  100 (242)
T 1p6f_A           35 VEYQL-HFEGSLFAVDRPKPPERINKVKFYIPDMNSR------MAGQYSCIYRVGELWSEPSNLLDLVVTEM-------Y  100 (242)
T ss_dssp             CEEEE-EETTEEEEEECCSSCTTCCEEEEEECSCCGG------GCEEEEEEEEETTEECCCCCCEEEEEECC-------S
T ss_pred             cEEEE-EECCCccccccccccCCcceeEEEecCCCcc------cCeEEEEEEecCCccccCCcceEEEeecc-------c
Confidence            46889 88888764211 1001112347999999766      9999999998865422 22  44444421       1


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..|.+...+ . ..+.+|+++.|.|.+.+. .+.+.|+
T Consensus       101 ~~P~i~~~p-~-~~v~~G~~vtL~C~~~~~-~~~~~w~  135 (242)
T 1p6f_A          101 DTPTLSVHP-G-PEVISGEKVTFYCRLDTA-TSMFLLL  135 (242)
T ss_dssp             CCCEEEEES-C-SEEETTCEEEEEEECTTS-CSEEEEE
T ss_pred             CCCceEccC-C-CccCCCCcEEEEEecCCC-CCEEEEE
Confidence            126665554 2 357889999999998765 4688886

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.15  E-value=2.8e-10  Score=70.85  Aligned_cols=70  Identities=23%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|+|.+.+..+.... ..|.|..+          |.+...+ . ..+..|..+.|.|.+.|
T Consensus        83 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~L~V~~~----------P~v~~~~-~-~~~~~~~~~~L~C~~~g  144 (248)
T 3pv7_A           83 SLRLPGIQLE------EAGEYRCEVVVTPLKAQGTVQLEVVAS----------PASRLLL-D-QVGMKENEDKYMCESSG  144 (248)
T ss_dssp             CEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEBC----------CEEEEEC-C---------CEEEEEEEE
T ss_pred             EEEeCCCCHH------HCeEEEEEEEeCCccceeEEEEEEecC----------CceEEec-C-CccccCCCcEEEEEEcc
Confidence            4999999766      999999999998765543 44555543          6655544 2 23445788889999999


Q ss_pred             -cCCc-eeEEe
Q psy11568        107 -SPTP-KIEWL  115 (116)
Q Consensus       107 -~P~p-~i~W~  115 (116)
                       .|.| .++|+
T Consensus       145 ~~P~pi~v~W~  155 (248)
T 3pv7_A          145 FYPEAINITWE  155 (248)
T ss_dssp             EBSSCCEEEEE
T ss_pred             EECCCeEEEEE
Confidence             7999 99997

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.15  E-value=4.9e-11  Score=74.19  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=50.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc---eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV---IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~---~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.   ..  ...+.|....  . ... .|.+....+....+..|+.+.|.|
T Consensus        78 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~-~~~-~P~i~~~~~~~~~~~~g~~v~L~C  147 (246)
T 4dzb_B           78 TLTVTSAHPE------DSSFYICSARTSGDFGEQFFGPGTRLTVLEDL--K-NVF-PPEVAVFEPSEAEISHTQKATLVC  147 (246)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCSSGGGCCEECCCEEEEEESCG--G-GCB-CCEEEEECCCHHHHHHHSEEEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEecCCCCcceEEcCCEEEEEecCC--C-ccc-CCceEeecCCchhccCCCcEEEEE
Confidence            6999999766      999999999976431   11  1334443210  0 001 255544333444455699999999


Q ss_pred             eecCcCCc--eeEEe
Q psy11568        103 AAQGSPTP--KIEWL  115 (116)
Q Consensus       103 ~~~g~P~p--~i~W~  115 (116)
                      .+.|.|+|  .++|+
T Consensus       148 ~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B          148 LATGFYPDHVELSWW  162 (246)
T ss_dssp             EEEEEBSSCEEEEEE
T ss_pred             EEccCcCCceEEEEE
Confidence            99997765  88996

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.15  E-value=3.3e-11  Score=77.80  Aligned_cols=96  Identities=10%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             EEEEEccCCeeeeccccceEEe--eCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--EEEEEEEEeCcEe
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIAL--SNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--LSRFVHVKAGSVV   72 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~--~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~~~~~~v~~~~~~   72 (116)
                      .|+| +++|+++..... ....  .++      .|.|.....+      |+|.|+|.+.|..+..  ......+..    
T Consensus       150 ~v~W-~k~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~d------~~g~Y~C~a~n~~~~~~~~~~~~~~~~----  217 (327)
T 2wng_A          150 TLKW-FKNGNELSDFQT-NVDPVGESVSYSIHSTAKVVLTRED------VHSQVICEVAHVTLQGDPLRGTANLSE----  217 (327)
T ss_dssp             EEEE-EETTEECCCEEE-EEECSSCCSCEEEEEEEEEECCTTG------GGCEEEEEEECTTSCSCCEEEEEEGGG----
T ss_pred             EEEE-EECCEEcccccc-ccccccCCCceEEEEEEEEechhcC------cCceEEEEEeccccCCCcccceEEecc----
Confidence            8999 899998864221 1111  111      3555555333      7899999999997653  122111110    


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCc--eeEEe
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP--KIEWL  115 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~  115 (116)
                      . ...+ |.+...+ ..  +.+|+.+.|.|.+.|.|+|  .++|+
T Consensus       218 ~-v~~~-P~i~~~~-~~--~~~G~~v~l~C~~~g~~p~~~~v~W~  257 (327)
T 2wng_A          218 T-IRVP-PTLEVTQ-QP--VRAENQVNVTCQVRKFYPQRLQLTWL  257 (327)
T ss_dssp             T-BCBC-CEEEEEE-EC--CSSTTCCEEEEEEEEEBSSCEEEEEE
T ss_pred             c-cCCC-CEEEEec-CC--cCCCCcEEEEEEEccccCCCcEEEEE
Confidence            0 0112 5555443 22  6789999999999996544  79997

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.1e-09  Score=68.45  Aligned_cols=81  Identities=16%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE----EEEEEEeCcEeee----------eccCCCceEecCCCeEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS----RFVHVKAGSVVSL----------LDIQGPLFRIEPPYRFEFS   93 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~----~~~~v~~~~~~~~----------~~~~~p~~~~~~~~~~~~~   93 (116)
                      .|.|.++..+      |+|.|.|.+.+..+....    ..|.|........          .....+..+..+ ....+.
T Consensus        75 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~  147 (256)
T 3ux9_B           75 SLAITGLQSE------DEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVES-GGGLVQ  147 (256)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEE-CCEEEC
T ss_pred             EEEECCCChh------hCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcC-CCeEEc
Confidence            6999999766      999999999997543221    3444443200000          000001122232 345588


Q ss_pred             CCCcEEEEeeecCcC--CceeEEe
Q psy11568         94 NESGGRLDCAAQGSP--TPKIEWL  115 (116)
Q Consensus        94 ~g~~~~l~C~~~g~P--~p~i~W~  115 (116)
                      +|+++.|.|.+.+.|  .+.+.|+
T Consensus       148 ~G~~v~L~C~~~~~~~~~~~v~W~  171 (256)
T 3ux9_B          148 PGGSLRLSCAASGFTFSSYAMSWV  171 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             CCCeEEEEEEEeCCcccccEEEEE
Confidence            999999999999877  7899996

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.15  E-value=3.2e-10  Score=62.96  Aligned_cols=61  Identities=15%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.| +++|..+....+......  ...|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        36 ~p~i~W-~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~~   99 (114)
T 2cqv_A           36 PITCTW-MKFRKQIQESEHMKVENSENGSKLTILAARQE------HCGCYTLLVENKLGSRQAQVNLTVVD   99 (114)
T ss_dssp             SCEEEE-EESSSBCCCSSSEEEEECSSEEEEEETTCCTT------TCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             CCEEEE-EECCEECcCCCCEEEEEcCCEEEEEECCCChh------cCEEEEEEEEECCCcEEEEEEEEEEC
Confidence            378999 889888864333322222  237999999766      999999999999997664 5565553

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.14  E-value=2.1e-10  Score=70.35  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=50.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-----ce-EEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-----VI-LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-----~~-~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.+..+     .. ....|.|...     ... .|.+...++. ..+..|+.+.|.
T Consensus        82 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~i~~~~~~-~~~~~g~~v~L~  148 (222)
T 1q9r_B           82 YLQMNTLRAE------DSATYYCARDHDGYYERFSYWGQGTLVTVSAA-----KTT-PPSVYPLAPG-SAAQTNSMVTLG  148 (222)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCCSSCCSCCCBCCCEEEEECSS-----CCB-CCEEEEECCC-SCCCCSSEEEEE
T ss_pred             EEEECcCCcc------cCeEEEEEEeccCCcccceEeCCceEEEeccC-----CCC-CCeEEEcccc-ccccCCCcEEEE
Confidence            7999999766      99999999999764     11 1234444421     001 2555443322 124579999999


Q ss_pred             eeecCc-CCc-eeEEe
Q psy11568        102 CAAQGS-PTP-KIEWL  115 (116)
Q Consensus       102 C~~~g~-P~p-~i~W~  115 (116)
                      |.+.|. |.| .++|+
T Consensus       149 C~~~g~~P~p~~v~W~  164 (222)
T 1q9r_B          149 CLVKGYFPEPVTVTWN  164 (222)
T ss_dssp             EEEEEEBSSCCEEEEG
T ss_pred             EEEccEECCCCEEEEe
Confidence            999986 888 99996

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.14  E-value=1e-10  Score=73.01  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..+.|...      .. .|.+...++.. ....|+.+.|.|.+.
T Consensus       114 ~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~~l~V~~~------~~-~P~v~~~~~~~-~~~~g~~v~l~C~~~  179 (254)
T 2c1o_A          114 TLKISRVEAE------DLGIYYCVQGSHFPPTFGAGTKLELKRA------DA-APTVSIFPPSS-EQLTSGGASVVCFLN  179 (254)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSSSSCEEBCCEEEEECCC------CB-CCEEEEECCCH-HHHHTTEEEEEEEEE
T ss_pred             EEEECcCCcc------cCEEEEEEEEcCcceEecCCEEEEECCC------CC-CCeeEeecCCh-hhccCCcEEEEEEEe
Confidence            7999999766      999999999998664332  23444321      01 15555443222 223578999999998


Q ss_pred             CcC-C-ceeEEe
Q psy11568        106 GSP-T-PKIEWL  115 (116)
Q Consensus       106 g~P-~-p~i~W~  115 (116)
                      |.+ + +.++|+
T Consensus       180 g~~p~~~~v~W~  191 (254)
T 2c1o_A          180 NFYPKDINVKWK  191 (254)
T ss_dssp             EEBSSCCEEEEE
T ss_pred             cccCCCcEEEEE
Confidence            854 4 358997

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.14  E-value=1.5e-10  Score=77.25  Aligned_cols=75  Identities=21%  Similarity=0.367  Sum_probs=50.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-----ce-EEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-----VI-LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-----~~-~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|+|.|.|..+     .. ....+.|...     ... .|.+...++ ...+..|+.+.|.
T Consensus       298 ~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~v~~~~~-~~~~~~g~~v~L~  364 (438)
T 1qgc_4          298 YLQMSSLRSA------DTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA-----KTT-PPSVYPLAP-GSAAAAASMVTLG  364 (438)
T ss_dssp             EEEECSCCGG------GCCEEEEEECCSSSCCCCCSBCCCEEEEECSS-----CCB-CCEEEEECC-CGGGCCSSEEEEE
T ss_pred             EEEECCCChh------hCEEEEEEEEccCCCccceeeCCCEEEEEecC-----CCC-CCeEEEcCc-ccccccCCcEEEE
Confidence            7999999766      99999999999543     11 1233444321     001 254443332 2234579999999


Q ss_pred             eeecCc-CCc-eeEEe
Q psy11568        102 CAAQGS-PTP-KIEWL  115 (116)
Q Consensus       102 C~~~g~-P~p-~i~W~  115 (116)
                      |.+.|. |.| .++|+
T Consensus       365 C~~~g~~P~~~~v~W~  380 (438)
T 1qgc_4          365 CLVKGYFPEPVTVTWN  380 (438)
T ss_dssp             EEEESCBSSCCEEEEG
T ss_pred             EEeccccCCCcEEEEe
Confidence            999997 888 99996

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.14  E-value=1.1e-10  Score=73.47  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc-eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV-IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAA  104 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  104 (116)
                      .|.|.++..+      |+|.|.|.+.+..+. ..  ...+.|.....   ... .|.+....+....+..|+.+.|.|.+
T Consensus       101 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~---~~~-~P~v~~~~~~~~~~~~g~~v~L~C~~  170 (268)
T 3pl6_D          101 TLKIQRTERG------DSAVYLCATSALGDTQYFGPGTRLTVLEDLK---NVF-PPEVAVFEPSEAEISHTQKATLVCLA  170 (268)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESSSSSCEECCCEEEEEESCGG---GCB-CCEEEEECCCHHHHHHHSEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEecCCCceeeCCcEEEEEecCcc---ccc-CCceEEeCCCcccccCCCceEEEEEE
Confidence            6999999766      999999999984211 11  13444443100   001 15444433344445568999999999


Q ss_pred             cCcCCc--eeEEe
Q psy11568        105 QGSPTP--KIEWL  115 (116)
Q Consensus       105 ~g~P~p--~i~W~  115 (116)
                      .|.|++  .++|+
T Consensus       171 ~g~~p~~~~v~W~  183 (268)
T 3pl6_D          171 TGFYPDHVELSWW  183 (268)
T ss_dssp             EEEBSSCEEEEEE
T ss_pred             CcccCCCeEEEEE
Confidence            997655  88996

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.12  E-value=1.2e-10  Score=70.82  Aligned_cols=75  Identities=17%  Similarity=0.250  Sum_probs=48.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--EE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--LS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..  ..  ..+.|....     .. .|.+...+ ....+..|+.+.|.|.
T Consensus        70 ~L~I~~v~~~------D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~-----~~-~p~v~~~~-~~~~~~~g~~v~L~C~  136 (212)
T 1nfd_E           70 TLTISGAQPE------DEAAYYCLSSYGDNNDLVFGSGTQLTVLRGP-----KS-SPKVTVFP-PSPEELRTNKATLVCL  136 (212)
T ss_dssp             EEEETTCCGG------GCSEEEEEEEETTTTEEEECCCEEEEEECCC-----CB-CCEEECCC-CCHHHHHTTEECCCEE
T ss_pred             EEEECcCCcc------cCEEEEEEEEcccCcccccCCceEEEEccCC-----CC-CCEEEeeC-CchHhccCCceEEEEE
Confidence            7999999766      9999999999732211  11  334443210     01 15554433 2223356899999999


Q ss_pred             ecCc-CC-ceeEEe
Q psy11568        104 AQGS-PT-PKIEWL  115 (116)
Q Consensus       104 ~~g~-P~-p~i~W~  115 (116)
                      +.|. |+ |.++|+
T Consensus       137 ~~g~~p~~~~v~W~  150 (212)
T 1nfd_E          137 VNDFYPGSATVTWK  150 (212)
T ss_dssp             EEEEBSSCCEEEEE
T ss_pred             EEeeECCccEEEEE
Confidence            9987 54 799997

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.12  E-value=5.6e-10  Score=68.93  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCC------c--eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAG------V--IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES   96 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g------~--~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~   96 (116)
                      ..|.|.++..+      |+|.|.|.+.+..|      .  ..  ...|.|...     ... .|.+...++ ...+..|+
T Consensus        80 ~~L~I~~v~~~------D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~i~~~~~-~~~~~~g~  146 (228)
T 3bae_H           80 VFMKITSVDTA------DTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA-----KTT-APSVYPLAP-VCGDTTGS  146 (228)
T ss_dssp             EEEEECSCCGG------GCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC-----CCB-CCEEEEECC------CCS
T ss_pred             EEEEEcCCCcc------cCEEEEEEEecCCCccccccceeeeCCcEEEEecCC-----CCC-CCEEEEecc-cccccCCC
Confidence            37999999766      99999999998764      1  11  133444321     001 255544332 23356799


Q ss_pred             cEEEEeeecCc-CCc-eeEEe
Q psy11568         97 GGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        97 ~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      .+.|.|.+.|. |.| .++|+
T Consensus       147 ~~~l~C~~~g~~P~p~~v~W~  167 (228)
T 3bae_H          147 SVTLGCLVKGYFPEPVTLTWN  167 (228)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEG
T ss_pred             CEEEEEEEccEeCCCEEEEEe
Confidence            99999999986 888 99996

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.12  E-value=3.6e-11  Score=64.76  Aligned_cols=49  Identities=14%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|+| ++||+++......+....++  .|.|.++..+      |+|.|+|.|.|..
T Consensus        34 ~~~v~W-~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~   84 (91)
T 2lvc_A           34 DAPVRW-YKDGQEVEESDFVVLENEGPHRRLVLPATQPS------DGGEFQCVAGDEC   84 (91)
T ss_dssp             TSCCEE-EETTSCCCCCSSCEEEEETTEEEEEESSCCGG------GCSEEEEECSSCE
T ss_pred             CcEEEE-EECCEEeeeeeeeeEEecCCeEEEEeCCCChh------hcEEEEEEEcceE
Confidence            367999 99999997655545544444  6999999766      9999999998863

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.12  E-value=2.8e-10  Score=61.38  Aligned_cols=48  Identities=15%  Similarity=0.060  Sum_probs=37.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.|+| ++||+++....+.+....++  .|.|.++..+      |+|.|+|.|.|..
T Consensus        34 ~~v~W-~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~------D~G~Y~C~a~n~~   83 (93)
T 1waa_A           34 VHGQW-KLKGQPLAASPDCEIIEDGKKHILILHNCQLG------MTGEVSFQAANTK   83 (93)
T ss_dssp             CCCEE-EETTEECCCBTTEEEEEETTEEEEEECSCCGG------GCEEEEEEETTEE
T ss_pred             CeEEE-EECCEECcCCCCEEEEEECCEEEEEECCCChh------hCEEEEEEECCCc
Confidence            67899 99999987544444444443  7999999766      9999999999853

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.12  E-value=2.9e-10  Score=70.63  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC---CceE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA---GVIL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~---g~~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      .|.|.++..+      |+|.|.|.+.+..   ....  ...+.|.....   ... .|.+....+....+..|+.+.|.|
T Consensus        77 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~-~p~~~~~~~~~~~~~~g~~v~l~C  146 (245)
T 4ei6_B           77 TLKIQPTALE------DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK---NVF-PPEVAVFEPSEAEISHTQKATLVC  146 (245)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSSTTCCCEECCCEEEEEESCGG---GCB-CCEEEEECCCHHHHHHHSEEEEEE
T ss_pred             EEEECCCCHh------HCEEEEEEEccCCCcceEEEcCCcEEEEecccC---CCC-CceEEEeCCCcccccCCCceEEEE
Confidence            7999999766      9999999999632   1111  13344442100   001 154443332444455689999999


Q ss_pred             eecCc-CCc-eeEEe
Q psy11568        103 AAQGS-PTP-KIEWL  115 (116)
Q Consensus       103 ~~~g~-P~p-~i~W~  115 (116)
                      .+.|. |.| .++|+
T Consensus       147 ~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B          147 LATGFYPDHVELSWW  161 (245)
T ss_dssp             EEEEEBSSCEEEEEE
T ss_pred             EEeeEeCCCeEEEEE
Confidence            99984 545 78996

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.11  E-value=4.4e-10  Score=60.85  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=40.4

Q ss_pred             CcEEEEEccCCeeeecccc---ceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKD---LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~---~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|..+.....   ......++.|.|.++..+      |+|.|+|.+.|..|....
T Consensus        37 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~~~   93 (100)
T 3caf_A           37 MPTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSINH   93 (100)
T ss_dssp             CCEEEE-EETTEECCGGGSTTCCEEEGGGTEEEECSCCGG------GCEEEEEEEEETTEEEEE
T ss_pred             CCEEEE-EECCEEcccccccccEEEecCeEEEEEccCCcC------CCEEEEEEEEeCCCEEEE
Confidence            378999 899988865322   122233458999999766      999999999999987653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.11  E-value=1.8e-10  Score=72.78  Aligned_cols=97  Identities=14%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             cEEEEEccCCeeeeccccc-e--EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC----ceEE--EEEEEEeCcEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-R--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG----VILS--RFVHVKAGSVV   72 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~--~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g----~~~~--~~~~v~~~~~~   72 (116)
                      +.+.| +|+|..+...... +  ....++.|.|.++..+      |+|.|+|.+.+..+    ...+  ..|.|...   
T Consensus        35 ~~~~W-~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~---  104 (257)
T 1b6u_A           35 QHFLL-HREGKFKDTLHLIGEHHDGVSKANFSIGPMMQD------LAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL---  104 (257)
T ss_dssp             SEEEE-EEESTTCEEEEEECBCCTTCEEEEEEECSCCTT------TCEEEEEEEECSSCTTSCCCCCCCEEEEEECS---
T ss_pred             cEEEE-EECCCCCCcceeeeeccCCCceEEEEeecCCcc------cCEEEEEeEeccCCCccccccCCCEEEecccC---
Confidence            57899 7887655311000 0  0112347999999766      99999999986431    2222  44555432   


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                          ...|.+...+.  ..+.+|+++.|.|.+.+.| +.+.|+
T Consensus       105 ----~~~P~l~~~p~--~~V~~G~~vtL~C~~~~~~-~~~~w~  140 (257)
T 1b6u_A          105 ----YEKPSLSAQPG--PTVLAGESVTLSCSSRSSY-DMYHLS  140 (257)
T ss_dssp             ----SCCCEEECSSC--TTCBTTCEEEEEEECSSCC-SEEEEE
T ss_pred             ----CCCcceEccCC--CccCCCCEEEEEEeCCCCC-cEEEEE
Confidence                01256655542  2467899999999998764 688896

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.11  E-value=3.4e-10  Score=68.70  Aligned_cols=72  Identities=19%  Similarity=0.351  Sum_probs=45.9

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE--EEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe-e
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR--FVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC-A  103 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~--~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C-~  103 (116)
                      .+|.|.++..+      |+|.|.|.+.|..+.....  .+.+..+          |.....+ .......+..+.+.| .
T Consensus        83 ~sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~c~~  145 (225)
T 4fmk_A           83 ATLAFRGLRVE------DEGNYTCEFATFPNGTRRGVTWLRVIAQ----------PENHAEA-QEVTIGPQSVAVARCVS  145 (225)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEEETTEEEEEEEEEEEEBC----------CEEEEEE-CCBCCSSSCEEEEEEEE
T ss_pred             EEEEEccCCHH------HCcceEEEEEeCCCcceeeeeeeeeecC----------Cceeecc-cceeecceeeeeeeeee
Confidence            46999999766      9999999999987765542  2222222          3333332 222334456666665 4


Q ss_pred             ecCcCCceeEEe
Q psy11568        104 AQGSPTPKIEWL  115 (116)
Q Consensus       104 ~~g~P~p~i~W~  115 (116)
                      +.+.|+|.+.|+
T Consensus       146 ~~~~P~~~~~w~  157 (225)
T 4fmk_A          146 TGGRPPARITWI  157 (225)
T ss_dssp             EEEBSCCEEEEE
T ss_pred             cCCCCCCEEEEE
Confidence            566788899986

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.10  E-value=1.9e-10  Score=71.97  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..+.|...      .. .|.+...++.. .+..|+.+.|.|.+.
T Consensus       110 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~-~P~v~~~~~~~-~~~~g~~v~L~C~~~  175 (252)
T 3bkj_L          110 TLRISRVEAE------DLGVYYCFQASLVPLTFGAGTKLELKRA------DA-APTVSIFPPSS-EQLTSGGASVVCFLN  175 (252)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSBSSCEECCCEEEEECCC------CB-CCEEEEECCCH-HHHHHTEEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEEcCCccEECCCEEEEEeCC------Cc-CcEEEEeCCCh-hhcCCCcEEEEEEEe
Confidence            7999999766      999999999998654332  33444321      01 25555443222 234688999999999


Q ss_pred             Cc-CCc-eeEEe
Q psy11568        106 GS-PTP-KIEWL  115 (116)
Q Consensus       106 g~-P~p-~i~W~  115 (116)
                      |. |.| .++|+
T Consensus       176 g~~p~~~~v~W~  187 (252)
T 3bkj_L          176 NFYPKDINVKWK  187 (252)
T ss_dssp             EEBSSCCEEEEE
T ss_pred             eEeCCCcEEEEE
Confidence            85 544 79997

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=2.9e-10  Score=61.76  Aligned_cols=52  Identities=19%  Similarity=0.328  Sum_probs=40.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|..+...  .+....++.|.|.++..+      |+|.|+|.|.|..|....
T Consensus        31 pp~i~W-~k~g~~~~~~--~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~   82 (99)
T 2cr3_A           31 VQSINW-LRDGVQLAES--NRTRITGEEVEVQDSVPA------DSGLYACVTSSPSGSDTT   82 (99)
T ss_dssp             CCEEEE-EESSSBCCCC--SSEEECSSEEEETTCCTT------TCEEEEEEEEETTEEEEE
T ss_pred             CCeEEE-EECCEECCCC--CcEEEECCEEEEccCCHH------HCEEEEEEEEeCCceEEE
Confidence            378999 8898877542  244455779999999766      999999999999987653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.09  E-value=2.4e-11  Score=77.03  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|+|.+.|..|.... ..|.|..+        + ..+...+ ....+.+|+.+.|.|.+.+
T Consensus        52 ~L~i~~~~~~------d~G~Y~C~~~n~~~~~~~~~~l~V~~~--------~-~~~~~~~-~~~~v~~g~~v~l~C~~~~  115 (292)
T 4dkd_C           52 ILSTNNATFQ------NTGTYRCTEPGDPLGGSAAIHLYVKDP--------A-RPWNVLA-QEVVVFEDQDALLPCLLTD  115 (292)
T ss_dssp             EEEESSCCGG------GCSCEEECCCC----CCEEECCEECCS--------S-CCEEESC-SEEEEETTSCEECCEEESS
T ss_pred             EEEEcccccc------cCEEEEEEEccCCCCcceEEEEEEcCc--------c-ccccccC-CeEEEcCCCcEEEeeeCCC
Confidence            7999999766      999999999998766543 44444432        1 2234444 6788899999999999998


Q ss_pred             cCC--ceeEEe
Q psy11568        107 SPT--PKIEWL  115 (116)
Q Consensus       107 ~P~--p~i~W~  115 (116)
                       |.  |.++|+
T Consensus       116 -~~~~~~v~W~  125 (292)
T 4dkd_C          116 -PVLEAGVSLV  125 (292)
T ss_dssp             -GGGGSSEEEE
T ss_pred             -CCcceeEEEE
Confidence             54  789996

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.09  E-value=3.5e-10  Score=69.70  Aligned_cols=76  Identities=17%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-----c--eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-----V--IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-----~--~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.+..|     .  ..  ...|.|...     ... .|.+....+.. .+..|+.+
T Consensus        80 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~v~~~~~~~-~~~~g~~v  146 (225)
T 1op3_H           80 YLQMHKMRVE------DTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA-----STK-GPSVFPLAPSS-KSTSGGTA  146 (225)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC-----SCB-CCEEEEECCCT-TCCCCCEE
T ss_pred             EEEECCCChh------hCEEEEEEEecCCCccccccceeecCCEEEecccC-----CCc-CCeEEEecccc-cccCCCcE
Confidence            7999999766      99999999999865     2  11  134445431     001 14443322122 24579999


Q ss_pred             EEEeeecCc-CCc-eeEEeC
Q psy11568         99 RLDCAAQGS-PTP-KIEWLI  116 (116)
Q Consensus        99 ~l~C~~~g~-P~p-~i~W~~  116 (116)
                      .|.|.+.|. |.| .++|+.
T Consensus       147 ~L~C~~~g~~P~p~~v~W~~  166 (225)
T 1op3_H          147 ALGCLVKDYFPEPVTVSWNS  166 (225)
T ss_dssp             EEEEEEEEEBSSCCEEECCT
T ss_pred             EEEEEEEeEECCCeEEEEec
Confidence            999999987 777 999963

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.09  E-value=8e-10  Score=67.66  Aligned_cols=75  Identities=19%  Similarity=0.322  Sum_probs=50.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc--e--EEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV--I--LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~--~--~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.  .  ....|.|...     ... .|.+...++. ..+..|+.+.|.|.
T Consensus        79 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~i~~~~~~-~~~~~g~~v~L~C~  145 (215)
T 1c5d_H           79 FLKMNSLQTE------DTAIYFCTREDGWNYFDYWGPGTMVTVSSA-----QTT-APSVYPLAPG-CGDTTSSTVTLGCL  145 (215)
T ss_dssp             EEEESSCCGG------GCEEEEEEECCSSSCSCCBCCCEEEEECSS-----CCB-CCCEEEECCC-SSCCCCSSEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEEecCCcccceEcCCEEEEecCC-----CCC-CCeEEeccCC-hhhccCCcEEEEEE
Confidence            7999999766      999999999987422  1  1234444421     001 1555433312 12467999999999


Q ss_pred             ecCc-CCc-eeEEe
Q psy11568        104 AQGS-PTP-KIEWL  115 (116)
Q Consensus       104 ~~g~-P~p-~i~W~  115 (116)
                      +.|. |.| .++|+
T Consensus       146 ~~g~~P~p~~v~W~  159 (215)
T 1c5d_H          146 VKGYFPEPVTVTWN  159 (215)
T ss_dssp             EEEEBSSCCEEEEG
T ss_pred             EeeeEcCCcEEEEc
Confidence            9987 888 99996

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.09  E-value=8.4e-11  Score=71.99  Aligned_cols=52  Identities=15%  Similarity=0.351  Sum_probs=40.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++||+++....  ++...+  ..|.|.++..+      |+|.|+|.|.|..|...+
T Consensus       146 ~p~i~W-~k~g~~l~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~  199 (207)
T 3rbs_A          146 ETHIVW-YKDEREISVDE--KHDFKDGICTLLITEFSKK------DAGIYEVILKDDRGKDKS  199 (207)
T ss_dssp             TCEEEE-EETTEEECCCC--CCCCSSEEEEEEETTCCGG------GCEEEEEEEEETTEEEEE
T ss_pred             CCEEEE-EECCEECCCCC--ceEcCCCEEEEEECCCCcc------cCEEEEEEEEcCCCEEEE
Confidence            388999 99999986422  222222  26999999766      999999999999998775

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.08  E-value=8.2e-10  Score=61.70  Aligned_cols=61  Identities=26%  Similarity=0.435  Sum_probs=43.5

Q ss_pred             CcEEEEEccCCeeeecc-ccceEEeeC-C--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYV-KDLRIALSN-G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~-~~~~~~~~~-~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.| +++|..+... .+......+ +  .|.|.++..+      |+|.|+|.|.|..|.... ..|.|..
T Consensus        44 ~p~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           44 PPKLFW-KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKK------DAGWYTVSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             CCEEEE-EETTEECCCCBTTEEEEECTTCEEEEEEEEECGG------GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEE-EECCEECcCCCCeEEEEeCCCCeEEEEECCCCcc------cCEEEEEEEEcCCCeEEEEEEEEEeC
Confidence            378999 8899887642 222222222 2  7999999766      999999999999987764 5555554

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.07  E-value=6.3e-10  Score=69.10  Aligned_cols=78  Identities=22%  Similarity=0.393  Sum_probs=50.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC---c-eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG---V-IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g---~-~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.+..+   . ..  ...|.|.....   ...+ |.+....+....+..|+.+.|.
T Consensus        73 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~-P~v~~~~~~~~~~~~g~~~~L~  142 (238)
T 1bec_A           73 SLILELATPS------QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR---QVTP-PKVSLFEPSKAEIANKQKATLV  142 (238)
T ss_dssp             EEEESSCCGG------GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGG---GCBC-CEEEEECCCSTTCSSSCSCSEE
T ss_pred             EEEEecCCcc------cCEEEEEEEecCCCCccccccCCCEEEEEeccCC---CCCC-CceEEECCChHHcccCCceEEE
Confidence            7999999766      99999999999742   1 11  13455543100   0012 5554433233344579999999


Q ss_pred             eeecCc-CCc-eeEEe
Q psy11568        102 CAAQGS-PTP-KIEWL  115 (116)
Q Consensus       102 C~~~g~-P~p-~i~W~  115 (116)
                      |.+.|. |.| .++|+
T Consensus       143 C~~~g~~P~~~~v~W~  158 (238)
T 1bec_A          143 CLARGFFPDHVELSWW  158 (238)
T ss_dssp             EEEEEEBSCCEEEEEE
T ss_pred             EEEeeEeCCCcEEEEE
Confidence            999986 655 89996

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.07  E-value=9.8e-11  Score=78.85  Aligned_cols=105  Identities=13%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCc-Eee
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGS-VVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~-~~~   73 (116)
                      |.|+| +++|..+......+....++      .|.|.++..+      | |.|+|.+.|..+.... ..+.+.... .+.
T Consensus       164 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~  235 (457)
T 1hzh_H          164 VTVSW-NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSNTKVDKKAEPKSCDKTHT  235 (457)
T ss_dssp             CEEEE-TTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGG------T-SCCEEEEEEGGGTEEEEEECCCCCSCSSCS
T ss_pred             eEEEE-EeCCEeccceEcCceECCCCCEEEEEEEEecccccC------C-ceEEEEEEeCCCCcceeEEecccCCCcccc
Confidence            68999 99986543111111111222      5888888655      8 9999999998765432 222221100 000


Q ss_pred             --e-----eccCCCceEecCCCeEE-EeCCCcEEEEeeecCcCCc----eeEEe
Q psy11568         74 --L-----LDIQGPLFRIEPPYRFE-FSNESGGRLDCAAQGSPTP----KIEWL  115 (116)
Q Consensus        74 --~-----~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~g~P~p----~i~W~  115 (116)
                        +     ...+ |.+...++.... +.+|+.+.|.|.+.|.|++    .++|+
T Consensus       236 ~~~~~~~~~~~~-p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~  288 (457)
T 1hzh_H          236 CPPCPAPELLGG-PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWY  288 (457)
T ss_dssp             CCSCCCCCCSSS-CEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEE
T ss_pred             cCCCCCccccCC-ceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEE
Confidence              0     0011 443222222222 5679999999999998653    89996

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.07  E-value=1.2e-09  Score=63.77  Aligned_cols=62  Identities=19%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEee-CC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS-NG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAG   69 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~-~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~   69 (116)
                      .|.|.| +++|..+........... ++  .|.|.++...      |+|.|+|.|.|..|.... ..|.|..+
T Consensus        70 ~p~v~W-~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A           70 DPEVMW-FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD------DDAKYTCKAVNSLGEATCTAELLVETM  135 (154)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEEECTTCEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCEEEE-EECCEECCCCCcEEEEECCCCeEEEEECCCChh------cCEEEEEEEEECCCeEEEEEEEEEeCc
Confidence            378999 899998865333333222 22  7999999766      999999999999998764 55666653

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.06  E-value=1.4e-10  Score=74.90  Aligned_cols=101  Identities=12%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             cEEEEEccCCeeeeccccc-eEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeee
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSL   74 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~   74 (116)
                      |.|+| ++||.++...... .....++      .|.|.....+      |+|.|+|.+.|..+.... .+.+..    ..
T Consensus        41 ~~v~W-~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~------d~g~Y~C~a~n~~~~~~~-~~~~~~----~~  108 (323)
T 2wqr_A           41 IQITW-LEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWL------SDRTYTCQVTYQGHTFED-STKKCA----DS  108 (323)
T ss_dssp             EEEEE-EETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHH------TTCCEEEEEEETTEEEEE-EECCCC----CS
T ss_pred             eEEEE-EECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcC------CCCcEEEEEEeCCCCcce-eeecCC----CC
Confidence            58999 8999988642111 1111233      3555555333      899999999998754331 111100    00


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCc-CCc---eeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PTP---KIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~p---~i~W~  115 (116)
                      .... |.+...++....+..|+++.|.|.+.|. |.|   .++|+
T Consensus       109 ~~~~-p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~  152 (323)
T 2wqr_A          109 NPRG-VSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWS  152 (323)
T ss_dssp             SGGG-CEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEE
T ss_pred             CCCC-CEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEE
Confidence            0111 4343333344556789999999999886 566   89996

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.06  E-value=2.3e-10  Score=73.94  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             EEEEEccCCeeeeccccceE------EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce-EEEEEEEEeCcEeeee
Q psy11568          3 VLLWLIRDNTVIAYVKDLRI------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAGSVVSLL   75 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~------~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~~~~~~v~~~~~~~~~   75 (116)
                      .|+|++.+|..+........      ....+.|.|.++..+      |+|.|+|.+.|..+.. ....+.+...     .
T Consensus       148 ~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~~~~~~~~~v~~~~~-----~  216 (323)
T 2wqr_A          148 QLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWI------EGETYQCRVTHPHLPRALMRSTTKTSG-----P  216 (323)
T ss_dssp             EEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHH------TTCCEEEEEECTTSSSCEEEEECCCCS-----C
T ss_pred             EEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHcc------CCCCEEEEEECCCCCCCeeeEEEccCC-----C
Confidence            89994445565532111100      012236999998666      9999999999986432 2222211100     0


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCc-CCc-eeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      .. .|.+...++.. ....|+.+.|.|.+.|. |.+ .++|+
T Consensus       217 ~~-~P~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~  256 (323)
T 2wqr_A          217 RA-APEVYAFATPE-WPGSRDKRTLACLIQNFMPEDISVQWL  256 (323)
T ss_dssp             CB-CCEEEEEECCC-CTTCTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CC-CCEEEEeCCCh-HHhcCCcEEEEEEeeeeeCCCcEEEEE
Confidence            01 15544332111 11239999999999984 443 79997

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.06  E-value=1.3e-09  Score=67.51  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=48.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC--CceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA--GVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~--g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.+..  .....  ..+.|....  . ... .|.+...++....+..|+.+.|.|.
T Consensus        76 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--~-~~~-~p~~~~~~~~~~~~~~g~~v~L~C~  145 (240)
T 3q5y_A           76 EMNMSALELE------DSAMYFCASSLRWGDEQYFGPGTRLTVLEDL--R-NVT-PPKVSLFEPSKAEIANKQKATLVCL  145 (240)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESSTTBCCEECCCEEEEEESCG--G-GCB-CCEEEEECCCHHHHHHHSEEEEEEE
T ss_pred             EEEECcCChh------HCEEEEEEEccCCCcceEEcCCEEEEEeccc--c-CCC-CCeeEEeCCchhhcccCCceEEEEE
Confidence            6999999766      9999999998432  11111  334443210  0 001 2555443334444556899999999


Q ss_pred             ecC-cCCc-eeEEe
Q psy11568        104 AQG-SPTP-KIEWL  115 (116)
Q Consensus       104 ~~g-~P~p-~i~W~  115 (116)
                      +.| .|.| .++|+
T Consensus       146 ~~g~~P~~~~v~W~  159 (240)
T 3q5y_A          146 ARGFFPDHVELSWW  159 (240)
T ss_dssp             EEEEBSSCEEEEEE
T ss_pred             EeeEECCCeEEEEE
Confidence            998 5666 78896

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=4.2e-10  Score=61.98  Aligned_cols=61  Identities=26%  Similarity=0.350  Sum_probs=43.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEe-eCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL-SNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~-~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.| +++|..+.......... .++  .|.|.++..+      |+|.|+|.|.|..|.... ..|.|..
T Consensus        38 ~p~v~W-~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           38 TPDLSW-QLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR------DAGIYTCIATNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             CCEEEC-BBSSSBCCCCSSEEEEECTTSCEEEEESSCCGG------GCSBBCEEEECSSCEEEECCEEEEEC
T ss_pred             CCEEEE-EECCEECCCCCceEEEEecCCeEEEEEeeCCcc------cCEEEEEEEECCCCEEEEEEEEEEeC
Confidence            378999 88988876433333222 233  7999999766      999999999999987654 5555554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.04  E-value=1.2e-09  Score=70.07  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=48.6

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec-
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ-  105 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-  105 (116)
                      .+|.|.++..+      |+|.|+|.+.+..+...+..+.+..      ..  .|.....+ ....+..+..+.+.|.+. 
T Consensus        79 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~~~~~~~~l~v------~~--~P~~~~~~-~~~~~~~~~~~~~~C~~~~  143 (313)
T 4fqp_A           79 ASLRMFGLRVE------DEGNYTCLFVTFPQGSRSVDIWLRV------LA--KPQNTAEV-QKVQLTGEPVPMARCVSTG  143 (313)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEECSSSCEEEEEEEECC------BB--CCEEEEEE-CCBCCCSSCEEEEEEEEEE
T ss_pred             eEEEECcCChh------hCEEEEEEEeeccCcceeeeeeeee------cc--CCcceecc-cceEeecCceEEEEEEccC
Confidence            46999999766      9999999886553333332222221      11  15554443 344556688888899764 


Q ss_pred             CcCCceeEEe
Q psy11568        106 GSPTPKIEWL  115 (116)
Q Consensus       106 g~P~p~i~W~  115 (116)
                      +.|.|.++|+
T Consensus       144 ~~P~~~i~W~  153 (313)
T 4fqp_A          144 GRPPAQITWH  153 (313)
T ss_dssp             EBSCCEEEEE
T ss_pred             ccCCcEEEee
Confidence            7899999997

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.03  E-value=1.2e-09  Score=67.16  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--E--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--L--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.+..+..  .  ...|.|....     .. .|.+...+  ...+..|+.+.|.|.
T Consensus        80 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-----~~-~P~v~~~~--~~~~~~g~~v~L~C~  145 (220)
T 2fbj_H           80 YLQMSKVRSE------DTALYYCARLHYYGYNAYWGQGTLVTVSAES-----AR-NPTIYPLT--LPPALSSDPVIIGCL  145 (220)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETTTEEEEECCCEEEEECSSC-----CB-CCEEEEEC--CCSSSCCSSEEEEEE
T ss_pred             EEEECCCChh------hCEEEEEEEeccccccceecCCEEEEecCCC-----CC-CCEEEEee--cccccCCCcEEEEEE
Confidence            7999999766      9999999999976531  1  1344444210     01 14444333  122467999999999


Q ss_pred             ecCc-CC--ceeEEeC
Q psy11568        104 AQGS-PT--PKIEWLI  116 (116)
Q Consensus       104 ~~g~-P~--p~i~W~~  116 (116)
                      +.+. |.  |.++|+.
T Consensus       146 ~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H          146 IHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             EEEEBSCCCEEEEESC
T ss_pred             EEeEECCCcEEEEEec
Confidence            9987 76  7999973

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.02  E-value=1.1e-10  Score=71.94  Aligned_cols=74  Identities=18%  Similarity=0.314  Sum_probs=42.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.|..+...+  ..+.|...      .. .|.+...++.. .+..|+.+.|.|.+.
T Consensus        94 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~-~p~v~~~~~~~-~~~~g~~v~L~C~~~  159 (233)
T 3bqu_C           94 VFTIENMLSE------DVADYYCLQSDNLPYTFGGGTNLEIKRA------DA-APTVSIFPPSS-EQLTSGGASVVCFLN  159 (233)
T ss_dssp             EEC-----CC------CCSEEEEEECSSSSCCBCCCCBC---CC------CB-CCEEEEECCCH-HHHHTTEEEEEEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEecCCceeecCCEEEEEeCC------CC-CCEEEEeCCCH-HhhcCCceEEEEEEc
Confidence            6999999766      999999999988654332  22333321      01 15555433222 224689999999999


Q ss_pred             CcC-Cc-eeEEe
Q psy11568        106 GSP-TP-KIEWL  115 (116)
Q Consensus       106 g~P-~p-~i~W~  115 (116)
                      |.+ .| .++|+
T Consensus       160 g~~p~~~~v~W~  171 (233)
T 3bqu_C          160 NFYPKDINVKWK  171 (233)
T ss_dssp             EEBSSCEEEEEE
T ss_pred             cccCCceEEEEE
Confidence            864 43 69996

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.02  E-value=4.2e-10  Score=68.53  Aligned_cols=102  Identities=21%  Similarity=0.283  Sum_probs=56.3

Q ss_pred             EEEEEccCCeeeeccc-cceEEeeCCeEEecC---CCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeecc
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDI   77 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i~~---v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~   77 (116)
                      .|+| +++|.++.... .......++.+.+..   +...   ...|+|.|+|.+.|..+... ...+.+..     ....
T Consensus        38 ~v~W-~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~---d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~-----~~~~  108 (207)
T 1l6x_A           38 KFNW-YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQ---DWLNGKEYKCKVSNKALPAPIEKTISKAK-----GQPR  108 (207)
T ss_dssp             EEEE-EETTEEECCCEECCCEECTTSCEEEEEEEECCHH---HHHTTCCEEEEEECTTSSSCEEEEECCCC-----SCCB
T ss_pred             EEEE-EECCccccCcccCCceeccCCcEEEEEEEEEEHH---HccCCceEEEEEEcCcCCcceEEEeccCC-----CCCc
Confidence            8999 88988775321 112233445554432   3222   01249999999999977542 22221100     0011


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCc-CC-ceeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PT-PKIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~  115 (116)
                      + |.+...++.... ..|..+.|.|.+.|. |. +.++|+
T Consensus       109 ~-P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~  146 (207)
T 1l6x_A          109 E-PQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWE  146 (207)
T ss_dssp             C-CEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             C-CEEEEECCChHH-hcCCcEEEEEEEeCeECCCeEEEEE
Confidence            2 554443322211 346679999999995 54 389996

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.02  E-value=4.4e-09  Score=64.14  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=43.1

Q ss_pred             CcEEEEEccCCeeeeccccceEE--ee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--LS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| +++|..+......++.  ..  .+.|.|.++..+      |+|.|.|.|.|..|.... ..+.+.
T Consensus        47 ~p~i~W-~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~v~  111 (215)
T 3mtr_A           47 SATISW-FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN------DFGNYNCTAVNRIGQESLEFILVQA  111 (215)
T ss_dssp             CCEEEE-EETTEESSCSSSCSEEEEEETTEEEEEECCCSGG------GCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCEEEE-EECCeECCCCCCccEEEecCCCeeEEEEecCChh------hCeEEEEEEEECCCceEEEEEEEEC
Confidence            378999 8999988653222222  22  347999999766      999999999999997764 444443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.01  E-value=1.9e-09  Score=66.31  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC---ce--E--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG---VI--L--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL  100 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g---~~--~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  100 (116)
                      .|.|.++..+      |+|.|.|.+.+..|   ..  .  ...|.|...     ... .|.+...++.. .+..|+.+.|
T Consensus        80 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~i~~~~~~~-~~~~g~~v~L  146 (223)
T 1dee_B           80 YLQMNSLRAE------DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG-----SAS-APTLFPLVSCE-NSNPSSTVAV  146 (223)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESSSSTTCCEEEECCCEEEEECSS-----CCB-CCEEEEEECTT-CCCSSSEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEeccccCcccceeecCcEEEEEccC-----CCC-CCEEEEecCCc-ccCCCCcEEE
Confidence            7999999766      99999999998753   11  1  124444321     001 14443322111 2467999999


Q ss_pred             EeeecCc-CCc-eeEEe
Q psy11568        101 DCAAQGS-PTP-KIEWL  115 (116)
Q Consensus       101 ~C~~~g~-P~p-~i~W~  115 (116)
                      .|.+.|. |.| .++|+
T Consensus       147 ~C~~~g~~P~p~~v~W~  163 (223)
T 1dee_B          147 GCLAQDFLPDSITFSWK  163 (223)
T ss_dssp             EEEEEEEBSSCCEEEEE
T ss_pred             EEEEEEEeCCCeEEEeE
Confidence            9999987 777 99997

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-09  Score=60.07  Aligned_cols=58  Identities=21%  Similarity=0.294  Sum_probs=40.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAG   69 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~   69 (116)
                      |.+.| +++|+.+....+......+  ..|.|.++..+      |+|.|+|.+.|.   .....|.|..+
T Consensus        42 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~---~~~~~l~V~~~  101 (113)
T 2cpc_A           42 AEVRW-TKDGEEVVESPALLLQKEDTVRRLVLPAVQLE------DSGEYLCEIDDE---SASFTVTVTEP  101 (113)
T ss_dssp             CCCEE-EETTEECCCBTTBEEEECSSEEEEEESSCCTT------TCEEEEEESSSC---EEEEEEEEECC
T ss_pred             CeEEE-EECCEECccCCCEEEEECCCEEEEEECCCCcc------cCEEEEEEEecC---cEEEEEEEecC
Confidence            67899 8999988654443333333  37999999766      999999999992   22355555543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.00  E-value=9.8e-10  Score=69.31  Aligned_cols=78  Identities=22%  Similarity=0.293  Sum_probs=48.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc---eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV---IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~---~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.   ..  ...+.|....  .. ..+ |.+...++....+..|+.+.|.|
T Consensus       102 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--~~-~~~-P~v~~~~~~~~~~~~g~~v~L~C  171 (270)
T 3qib_D          102 SLEIQSSEAG------DSALYLCASSLNWSQDTQYFGPGTRLLVLEDL--KN-VFP-PEVAVFEPSEAEISHTQKATLVC  171 (270)
T ss_dssp             EEEESSCCGG------GCEEEEEEEESCTTCCCCEECCCEEEEEESCS--TT-CBC-CEEEEEECCHHHHHHHSEEEEEE
T ss_pred             EEEECCCCHh------HCeEEEEEEecCCCccceEECCcEEEEEcccc--cc-ccC-CceEEECCCccccccCCceEEEE
Confidence            7999999766      999999999974321   11  1334444310  00 011 44433322333344589999999


Q ss_pred             eecC-cCCc-eeEEe
Q psy11568        103 AAQG-SPTP-KIEWL  115 (116)
Q Consensus       103 ~~~g-~P~p-~i~W~  115 (116)
                      .+.| .|.| .++|+
T Consensus       172 ~~~g~~P~~~~v~W~  186 (270)
T 3qib_D          172 LATGFYPDHVELSWW  186 (270)
T ss_dssp             EEEEEBSSCEEEEEE
T ss_pred             EecceeCCCeEEEEE
Confidence            9998 6767 78996

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.00  E-value=2.6e-10  Score=70.76  Aligned_cols=100  Identities=19%  Similarity=0.182  Sum_probs=56.9

Q ss_pred             EEEEEccCCeee-eccccceEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeee
Q psy11568          3 VLLWLIRDNTVI-AYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLL   75 (116)
Q Consensus         3 ~v~W~~~~g~~~-~~~~~~~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~   75 (116)
                      .|+| +++|+.+ ...........++      .|.|.++..+      |+|.|+|.+.|..+... ..+.|....   ..
T Consensus        47 ~v~W-~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~------D~g~Y~C~~~~~~~~~~-~~~~v~~~~---~~  115 (231)
T 2w59_A           47 SVTW-TREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWL------SGERFTCTVQHEELPLP-LSKSVYRNT---GP  115 (231)
T ss_dssp             EEEE-ECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHH------TTCCEEEEEECTTCSSC-EEEEECCCC---SC
T ss_pred             EEEE-EcCCeeccccccccceECCCCcEEEEEEEEecchhcc------CCCEEEEEEEcCCCCCc-eEEEEecCC---CC
Confidence            8999 7888877 3211111111222      5888888655      99999999999875422 222222100   00


Q ss_pred             ccCCCceEecCCCeEEEeCCCcEEEEeeecCc-C-CceeEEe
Q psy11568         76 DIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-P-TPKIEWL  115 (116)
Q Consensus        76 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P-~p~i~W~  115 (116)
                      .. .|.+...++.... ..+..+.|.|.+.|. | .+.++|+
T Consensus       116 ~~-~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~  155 (231)
T 2w59_A          116 TT-PPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWL  155 (231)
T ss_dssp             CB-CCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             Cc-CCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEE
Confidence            01 1544333212111 235679999999996 4 3689997

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.00  E-value=1.4e-09  Score=58.67  Aligned_cols=55  Identities=25%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      |.+.| ++++.....  . +....++.|.|.++..+      |+|.|.|.+.|..|.... ..|.|
T Consensus        41 ~~v~W-~k~~~~~~~--~-~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           41 YTLVW-TRLHNGKLP--S-RAMDFNGILTIRNVQPS------DAGTYVCTGSNMFAMDQGTATLHV   96 (98)
T ss_dssp             CEEEE-EEGGGBCCC--T-TEEEETTEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cEEEE-EeCCCCCCC--c-eeecCCCEEEEeCCChh------hCEEEEEEecCCCCccccEEEEEE
Confidence            68999 655332221  1 23445779999999766      999999999999987664 44443

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.98  E-value=4.7e-10  Score=61.72  Aligned_cols=58  Identities=10%  Similarity=0.236  Sum_probs=41.4

Q ss_pred             cEEEEEccCCeeeeccccceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      |.|.| +++|..+....+......  ++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|
T Consensus        44 p~v~W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           44 PTVTW-LRKGQVLSTSARHQVTTTKYKSTFEISSVQAS------DEGNYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             CBCCB-CSSSSCCTTCSSEEEEECSSEEEEEECCCCSS------CCSEEEECCBCSSCBCCEEEEEEE
T ss_pred             CEEEE-EECCEECCCCCCEEEEECCCEEEEEECcCCch------hCEEEEEEEEeCCCeEEEEEEEEE
Confidence            67899 899988764333222222  247999999766      999999999999987653 44443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.98  E-value=1.3e-09  Score=61.98  Aligned_cols=36  Identities=11%  Similarity=0.093  Sum_probs=30.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      ..|.|.++.+.      |+|.|+|.+.|..|...+ ..|.|..
T Consensus        75 ~~L~I~~v~~~------DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           75 FEMQIIKAKDN------FAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEECSCCTT------SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEccCCcc------cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            47999999766      999999999999987765 6666665

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.98  E-value=3.4e-09  Score=58.31  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=28.1

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      ..|.|.++..+      |+|.|+|.+.|..|...+ ..|.|
T Consensus        72 ~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           72 FELHITDAQPA------FTGSYRCEVSTKDKFDCSNFNLTV  106 (108)
T ss_dssp             EEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEecCCCc------cCEEEEEEEecCCCceEEEEEEEE
Confidence            47999999766      999999999999998774 55554

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-09  Score=58.90  Aligned_cols=61  Identities=23%  Similarity=0.258  Sum_probs=43.2

Q ss_pred             CcEEEEEccCCeeeecc-ccceEEee-CC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYV-KDLRIALS-NG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~-~~~~~~~~-~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.| +++|..+... ........ ++  .|.|.++..+      |+|.|+|.+.|..|.... ..|.|..
T Consensus        37 ~p~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           37 KPKIYW-FKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD------DDGNYTIMAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             CCEEEE-ECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTT------TCSCCEEEEECTTCCEEECCCEEEEC
T ss_pred             CCEEEE-EECCEECCCCCCeEEEEECCCcEEEEEECCCChh------hCEEEEEEEEECCCeEEEEEEEEEEC
Confidence            378999 8898888642 22222222 33  5999999766      999999999999998764 4455543

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.97  E-value=4.1e-10  Score=71.52  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=48.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC----c-e--EEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG----V-I--LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL  100 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g----~-~--~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  100 (116)
                      .|.|.++..+      |+|.|.|.+.|..+    . .  ....|.|....  . ...+ |.+....+....+..|+.+.|
T Consensus       101 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--~-~~~~-P~v~~~~~~~~~~~~g~~v~L  170 (279)
T 2wbj_D          101 TLTVTSAHPE------DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDL--K-NVFP-PEVAVFEPSEAEISHTQKATL  170 (279)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCG--G-GCBC-CEEEEEECCHHHHHHHSCCEE
T ss_pred             EEEEccCCcc------CCEEEEEEEcccccCCccceeeCCCEEEEEecCC--C-CCCC-CEEEEECCCcccccCCCceEE
Confidence            7999999766      99999999999432    1 1  11334444310  0 0011 544433223333346899999


Q ss_pred             EeeecCc-CC-ceeEEe
Q psy11568        101 DCAAQGS-PT-PKIEWL  115 (116)
Q Consensus       101 ~C~~~g~-P~-p~i~W~  115 (116)
                      .|.+.|. |. |.++|+
T Consensus       171 ~C~~~g~~P~~~~v~W~  187 (279)
T 2wbj_D          171 VCLATGFYPDHVELSWW  187 (279)
T ss_dssp             EEEEEEEBSSCEEEEEE
T ss_pred             EEEEeeEcCCCcEEEEE
Confidence            9999997 43 699997

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4.6e-10  Score=60.71  Aligned_cols=53  Identities=17%  Similarity=0.315  Sum_probs=38.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|..+..... ........|.|.++..+      |+|.|+|.|.|..|....
T Consensus        40 ~p~v~W-~~~g~~~~~~~~-~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~~~   92 (99)
T 2yr3_A           40 VPRITW-LLNGQPIQYARS-TCEAGVAELHIQDALPE------DHGTYTCLAENALGQVSC   92 (99)
T ss_dssp             CCCCEE-EESSSBCSSCCC-EEETTEEEEEECSCCTT------CCBCEEEEEECSSCEEEE
T ss_pred             CCeEEE-EECCEECcccce-EeeCCeEEEEECCCChh------hCEEEEEEEEECCCeEEE
Confidence            368999 888887753211 11222247999999766      999999999999987653

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=5.2e-10  Score=62.94  Aligned_cols=36  Identities=14%  Similarity=0.005  Sum_probs=28.9

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      ..|.|.++.+.      |+|.|+|.+.|..|...+ ..|.|..
T Consensus        80 ~~L~I~~v~~~------D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           80 VELHIGKVVLG------DRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             EEEEESSCCTT------TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             EEEEEeeCChh------hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            47999999766      999999999999997664 4455543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.97  E-value=9.3e-09  Score=72.83  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=63.8

Q ss_pred             cEEEEEccC--CeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEeCcEeeeecc
Q psy11568          2 YVLLWLIRD--NTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKAGSVVSLLDI   77 (116)
Q Consensus         2 p~v~W~~~~--g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~~~~~~~~~~   77 (116)
                      +.++| +++  |..+..............|.|.++..+      |+|.|+|.+.+..+...+  ..+.+...        
T Consensus       157 ~~v~w-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~~~~~~~~~~s~~~~~~v~~~--------  221 (772)
T 3v2a_R          157 LNVSL-CARYPEKRFVPDGNRISWDSKKGFTIPSYMIS------YAGMVFCEAKINDESYQSIMYIVVVVGY--------  221 (772)
T ss_dssp             CCEEE-EEETTTEEECCCSSSCEEETTTEEEEEGGGTT------TCSEEEEEEEETTEEEECCEEEEEEECC--------
T ss_pred             cEEEE-EecCCCccccCCCceeecCCCCCeEecCCChh------hCeEEEEEEEECCceEEEEEEEEEEecC--------
Confidence            56899 665  555432221112233457999999766      999999999987543333  22222221        


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecC--cCCceeEEeC
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQG--SPTPKIEWLI  116 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g--~P~p~i~W~~  116 (116)
                      +.+.+...++....+..|+++.|.|.+.+  .|.+.+.|+.
T Consensus       222 ~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~  262 (772)
T 3v2a_R          222 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY  262 (772)
T ss_dssp             CEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEEC
T ss_pred             ccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEec
Confidence            01334444445578899999999999998  4566899974

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.96  E-value=1.5e-09  Score=65.58  Aligned_cols=60  Identities=17%  Similarity=0.341  Sum_probs=44.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~   67 (116)
                      +|.++| +++|..+...........++.|.|.++..+      |+|.|+|.|.|..|...+..+.+.
T Consensus       138 pp~i~W-~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~s~~~~l~  197 (208)
T 3r4d_A          138 GANIQW-LFNSQSLQLTERMTLSQNNSILRIDPIKRE------DAGEYQCEISNPVSVRRSNSIKLD  197 (208)
T ss_dssp             TCEEEE-EETTEECCCCSSEEEETTTTEEEESSCCGG------GCEEEEEEEECTTCCEECCCEEEC
T ss_pred             CCceEE-EECCEeCCCCCCeEEcCCCCEEEEeccCHH------hCeEEEEEEecCCCcccCCceeee
Confidence            378999 889998864333333333468999999766      999999999999999887444433

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.96  E-value=1.7e-09  Score=73.30  Aligned_cols=76  Identities=21%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      +.|.|.++..+      |+|.|+|.|.|..|.... ..|.+..      ...+ |.+...++....+..|+.+.|.|.+.
T Consensus       309 ~~L~I~~~~~~------d~G~Y~C~a~n~~~~~~~~~~v~~~~------~~~~-P~v~~~~~~~~~v~~g~~~~L~C~~~  375 (475)
T 1iga_A          309 SVLPGCAEPWN------HGKTFTCTAAYPESKTPLTATLSKSG------NTFR-PEVHLLPPPSEELALNELVTLTCLAR  375 (475)
T ss_pred             EEEEEchHHhc------cCCcEEEEEEcCCCCCceEEEeecCC------CCCC-CeEEEECCChHHhccCCceEEEEEEe
Confidence            36889999665      999999999999876532 3332211      0112 55554443333456799999999999


Q ss_pred             Cc-C-CceeEEe
Q psy11568        106 GS-P-TPKIEWL  115 (116)
Q Consensus       106 g~-P-~p~i~W~  115 (116)
                      |. | .+.++|+
T Consensus       376 g~~P~~~~v~W~  387 (475)
T 1iga_A          376 GFSPKDVLVRWL  387 (475)
T ss_pred             eeECCCCEEEEE
Confidence            96 3 3589996

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.96  E-value=3.1e-09  Score=64.23  Aligned_cols=60  Identities=23%  Similarity=0.323  Sum_probs=46.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      .|.++| +++|..+... ..+....++.|.|.++..+      |+|.|+|.|.|..|...+  ..|.|..
T Consensus       141 ~~~v~W-~~~~~~l~~~-~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          141 EPTISW-KKDGSPLDDK-DERITIRGGKLMITYTRKS------DAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             CCEEEE-EETTEEECTT-STTEEEETTEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCEEEE-EECCccCCCC-cceEEccCCeEEEeeCCHh------hCeeEEEEEecccCceecceEEEEEEe
Confidence            378999 8999988643 2245566789999999766      999999999999987654  4555554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.96  E-value=5.9e-09  Score=63.05  Aligned_cols=60  Identities=17%  Similarity=0.203  Sum_probs=44.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.+.| +++|.++...........++   .|.|.++..+      |+|.|+|.|.|..|.... ..|.|.
T Consensus       146 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          146 PPEVSW-LKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA------DSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             CCEEEE-EETTEEECCCSSEEEEEETTTEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CceEEE-EECCeECccCCCEEEEEcCCCEEEEEEcCcchH------HCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            378999 99999987544433333323   7999999766      999999999999987664 445444

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.96  E-value=7.4e-10  Score=72.15  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             cEEEEEccCCeeeeccccceEEee------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEe------
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA------   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~------   68 (116)
                      |.|+| +++|..+...........      .+.|.|.++..+      | |.|+|.+.|..+... ...+.+..      
T Consensus       152 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~  223 (344)
T 1za6_B          152 VTVSW-NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSNTKVDKKVEPKSCDKTHT  223 (344)
T ss_dssp             CCEEE-TTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHH------H-BCEEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred             eEEEE-ecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcC------C-CcEEEEEEeCCCCccceEeecccccccccc
Confidence            58999 999876421100001111      126888888554      7 999999999987543 22221100      


Q ss_pred             ------CcEe---eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc-C-CceeEEeC
Q psy11568         69 ------GSVV---SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-P-TPKIEWLI  116 (116)
Q Consensus        69 ------~~~~---~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P-~p~i~W~~  116 (116)
                            ...+   .....+ |.+...++... ...|..+.|.|.+.|. | .+.++|+.
T Consensus       224 ~~~~~~~~~l~~~~~~~~~-P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k  280 (344)
T 1za6_B          224 CPPCGGGSSGGGSGGQPRE-PQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWES  280 (344)
T ss_dssp             ---------------CCBC-CEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEES
T ss_pred             cCCCCCCccccccCCCCcC-CEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEE
Confidence                  0000   001112 55443332221 2346779999999996 4 35889973

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.95  E-value=4.7e-09  Score=70.40  Aligned_cols=75  Identities=19%  Similarity=0.317  Sum_probs=49.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--EE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--LS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..  ..  ..|.|...     ... .|.+...++.. .+..|+.+.|.|.
T Consensus        80 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~i~~~~~~~-~~~~g~~v~L~C~  146 (444)
T 1igt_B           80 YLQMSRLKSE------DTAMYYCARHGGYYAMDYWGQGTTVTVSSA-----KTT-APSVYPLAPVC-GDTTGSSVTLGCL  146 (444)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSSSCEEEEBCCEEEEECSC-----CCB-CCEEEEECCCS-SCCCSSCEEEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEecCCcccccccCcEEEEecCC-----CCC-CCceeEecccc-cCCCCCcEEEEEE
Confidence            7999999766      9999999999986542  11  33444321     001 14443322121 2367999999999


Q ss_pred             ecCc-CCc-eeEEe
Q psy11568        104 AQGS-PTP-KIEWL  115 (116)
Q Consensus       104 ~~g~-P~p-~i~W~  115 (116)
                      +.|. |.| .++|+
T Consensus       147 ~~g~~P~p~~v~W~  160 (444)
T 1igt_B          147 VKGYFPEPVTLTWN  160 (444)
T ss_dssp             EEEEBSSCCEEEEG
T ss_pred             EcceeCCCcEEEEe
Confidence            9985 777 99996

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.95  E-value=2.4e-10  Score=70.46  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce--EE--EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--LS--RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~--~~--~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..  ..  ..+.|...     ... .|.+...++. .....|+.+.|.|.
T Consensus        92 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~p~v~~~~~~-~~~~~g~~v~L~C~  158 (234)
T 2j6e_L           92 SLAISGLRSE------DEADYYCATWDDSLSAVIFGGGTKLTVLGQ-----PKA-APSVTLFPPS-SEELQANKATLVCL  158 (234)
T ss_dssp             EEEEESCCST------TCSEEEEEEEETTTTEEEECCCBCCCBCCC-----CCC-CCCCCEECCC-HHHHTTSCCCEEEC
T ss_pred             EEEECCCCHH------HCEEEEEEEEcCCcceeEecCCEEEEEecC-----CCC-CCcccccCCC-hhHhcCCceEEEEE
Confidence            7999999766      9999999999998731  11  12222110     001 1444333322 12345889999999


Q ss_pred             ecCcCC--ceeEEe
Q psy11568        104 AQGSPT--PKIEWL  115 (116)
Q Consensus       104 ~~g~P~--p~i~W~  115 (116)
                      +.|.++  +.++|+
T Consensus       159 ~~g~~p~~~~v~W~  172 (234)
T 2j6e_L          159 ISDFFPGAVTVAWK  172 (234)
T ss_dssp             CCBCSSCCCEEEEE
T ss_pred             EEEEcCCceEEEEE
Confidence            998644  389996

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.94  E-value=4.5e-09  Score=62.42  Aligned_cols=59  Identities=25%  Similarity=0.376  Sum_probs=43.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.+.| +++|..+...........++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|
T Consensus       127 ~~~v~W-~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V  186 (189)
T 2v5t_A          127 EPAISW-FRNGKLIEENEKYILKGSNTELTVRNIINS------DGGPYVCRATNKAGEDEKQAFLQV  186 (189)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEETTTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEE-EECCEECcCCCcEEEecCCCEEEEcCCChh------hCeeEEEEEEeCCCceeEEEEEEE
Confidence            378999 899998865333223333568999999766      999999999999987764 44443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.93  E-value=2.4e-09  Score=57.08  Aligned_cols=47  Identities=17%  Similarity=0.288  Sum_probs=37.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|..+...       ..+.|.|.++..+      |+|.|.|.+.|..|...+
T Consensus        32 ~p~i~W-~~~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s   78 (91)
T 3bfo_A           32 IPHYQW-FKNELPLTHE-------TKKLYMVPYVDLE------HQGTYWCHVYNDRDSQDS   78 (91)
T ss_dssp             CCEEEE-EETTEECTTC-------CSSEEEESSCCGG------GCEEEEEEEECSSCEEEC
T ss_pred             CCEEEE-EcCCeeCCcC-------CCCeEEECCCCHH------hCEEEEEEEEcCCCCEEe
Confidence            378999 8898877532       2358999999766      999999999999986654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.93  E-value=1.5e-09  Score=60.79  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=40.4

Q ss_pred             cEEEEEccCCeeeec----cccceE------EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeC
Q psy11568          2 YVLLWLIRDNTVIAY----VKDLRI------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAG   69 (116)
Q Consensus         2 p~v~W~~~~g~~~~~----~~~~~~------~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~   69 (116)
                      +.++| +++|..+..    ......      ....+.|.|.++..+      |+|.|+|.|.|..|.... ..|.|...
T Consensus        40 ~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~g~~~~~~~l~V~~~  111 (122)
T 3s35_X           40 IDFNW-EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS------DQGLYTCAASSGLMTKKNSTFVRVHEK  111 (122)
T ss_dssp             CEEEE-ECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred             EEEEE-ECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcc------cCEEEEEEEccCCCceEEEEEEEEecc
Confidence            57899 777664421    011111      112347999999766      999999999999987764 55666543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.93  E-value=5.5e-09  Score=70.76  Aligned_cols=105  Identities=12%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             EEEEEccCCeeeeccccceEE-eeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeC--cEe-
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIA-LSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAG--SVV-   72 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~-~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~--~~~-   72 (116)
                      .|+| ++++............ ..+      +.|.|..+..+      |+|.|+|.+.|..+......+.+..+  ... 
T Consensus       160 ~v~W-~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~  232 (475)
T 1iga_A          160 SVTW-SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCL------AGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTP  232 (475)
T ss_pred             EEEE-cCCCcccceEeCCceecCCCCcEEEEEEEEechhHcC------CCceEEEEEEECCCCceeeeEecccccCcccc
Confidence            8999 8887543211000011 112      24667666444      89999999999987433333332110  000 


Q ss_pred             -------eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCC---ceeEE
Q psy11568         73 -------SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPT---PKIEW  114 (116)
Q Consensus        73 -------~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~---p~i~W  114 (116)
                             .......|.+...++....+.+|+++.|.|.+.|.++   +.++|
T Consensus       233 ~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          233 SPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             cccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence                   0000011444333333444578999999999998754   68999

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.93  E-value=3.6e-09  Score=66.22  Aligned_cols=79  Identities=19%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc--e--EEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV--I--LSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~--~--~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      ..|.|.++..+      |+|.|.|.+.+..+.  .  ....|.|...  +. ...+ |.+....+....+..|+.+.|.|
T Consensus        76 ~~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~--~~-~~~~-P~v~~~~~~~~~~~~g~~~~L~C  145 (252)
T 1oga_E           76 FPLTVTSAQKN------PTAFYLCASSSRSSYEQYFGPGTRLTVTED--LK-NVFP-PEVAVFEPSEAEISHTQKATLVC  145 (252)
T ss_dssp             CCEEECSCCSC------CCEEEEEEEESSTTSCCEECCCEEEEEESC--GG-GCBC-CEEEEECCCHHHHHHHSEEEEEE
T ss_pred             EEEEECcCChh------hCEEEEEEEecCCccceeECCCEEEEEecc--cC-CCCC-CeEEEECCChhhhccCCceEEEE
Confidence            37999999766      999999999986211  1  1123444431  00 0012 55544332333344689999999


Q ss_pred             eecCc-CC-ceeEEe
Q psy11568        103 AAQGS-PT-PKIEWL  115 (116)
Q Consensus       103 ~~~g~-P~-p~i~W~  115 (116)
                      .+.|. |. +.++|+
T Consensus       146 ~~~g~~P~~~~v~W~  160 (252)
T 1oga_E          146 LATGFYPDHVELSWW  160 (252)
T ss_dssp             EEEEEBSSCEEEEEE
T ss_pred             EEeeEcCCCcEEEEE
Confidence            99986 65 489996

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.92  E-value=7.7e-10  Score=74.51  Aligned_cols=102  Identities=21%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             EEEEEccCCeeeecccc-ceEEeeCCeEEecCCCCCCCCCCCC---ceEEEEEEEcCCCceE-EEEEEEEeCcEeeeecc
Q psy11568          3 VLLWLIRDNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVH---STVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDI   77 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i~~v~~~~~~~~~d---~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~   77 (116)
                      .|+| +++|.++..... ......++.+.+..+..-   ...|   +|.|+|.|.|..+... ...+.+...     ...
T Consensus       284 ~i~W-~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i---~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~-----~~~  354 (457)
T 1hzh_H          284 KFNW-YVDGVEVHNAKTKPREEQYNSTYRVVSVLTV---LHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG-----QPR  354 (457)
T ss_dssp             EEEE-EETTEEECCCEEEEEEECTTSCEEEEEEECC---CHHHHHHTCCEEEEEECTTSSSCEEEEECCCCC-----CCB
T ss_pred             EEEE-EeCCccccccccccceecCCCcEEEEEEEEE---CHHHccCCCcEEEEEeCCCCCCcceEEEEcccC-----CCC
Confidence            8999 999988753211 122334555555432100   1225   9999999998754432 222221000     011


Q ss_pred             CCCceEecCCCeEEEeCCCcEEEEeeecCcCCc--eeEEe
Q psy11568         78 QGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTP--KIEWL  115 (116)
Q Consensus        78 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~  115 (116)
                      + |.+...++....+..|+ +.|.|.+.|.|+|  .++|+
T Consensus       355 ~-P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~  392 (457)
T 1hzh_H          355 E-PQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWE  392 (457)
T ss_dssp             C-CEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred             C-CeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence            2 55554442322233455 9999999997554  89997

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.92  E-value=1.2e-09  Score=68.25  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=56.9

Q ss_pred             EEEEEccCCeeeeccc-cceEEe------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeee
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIAL------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSL   74 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~   74 (116)
                      .|+| ++++..+.... ......      ....|.|.++..+      |+|.|+|.+.|..+... ...+.+..     .
T Consensus        52 ~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------D~g~Y~C~~~~~~~~~~~~~~v~~~~-----~  119 (239)
T 1i1c_A           52 RFSW-FIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWL------NGKTFKCKVNSGAFPAPIEKSISKPE-----G  119 (239)
T ss_dssp             EEEE-EESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHH------TTCCEEEEEECSSSSSCEEEEECCCS-----S
T ss_pred             EEEE-EECCccccCcccccceEcCCCcEEEEEEEEEEhhHcc------CCCeEEEEEecccCCCCcEEEEecCC-----C
Confidence            7999 66665553211 111111      1236888888655      99999999999987542 22221100     0


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCc-CC-ceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PT-PKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~  115 (116)
                      ...+ |.+...++.. ....|+.+.|.|.+.|. |. ..++|+
T Consensus       120 ~~~~-P~v~v~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (239)
T 1i1c_A          120 TPRG-PQVYTMAPPK-EEMTQSQVSITCMVKGFYPPDIYTEWK  160 (239)
T ss_dssp             CCBC-CEEEEECCCG-GGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCcC-CEEEEECCCh-HHhcCCcEEEEEEEeeeECCCeEEEEE
Confidence            0112 5554443221 12347889999999984 54 378996

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.92  E-value=2.6e-09  Score=67.47  Aligned_cols=75  Identities=19%  Similarity=0.312  Sum_probs=42.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc------------eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV------------IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFS   93 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~------------~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~   93 (116)
                      .|.|.++..+      |+|.|.|.+.+..|.            ..  ...|.|...     ... .|.+....+. ..+.
T Consensus        80 sL~I~~v~~~------DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~-----~~~-~P~v~~~~p~-~~~~  146 (257)
T 3bn9_D           80 YLQMSSLRAE------DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA-----STK-GPSVFPLAPS-SKST  146 (257)
T ss_dssp             EEEEESCCGG------GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS-----CCB-CCEECCCCC------
T ss_pred             EEEECCCChh------hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC-----CCc-CCcEEEecCc-cccc
Confidence            7999999766      999999999997651            11  124444421     001 1444333222 2356


Q ss_pred             CCCcEEEEeeecCc-CCc-eeEEe
Q psy11568         94 NESGGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        94 ~g~~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      .|+.+.|.|.+.|. |.| .++|+
T Consensus       147 ~g~~v~L~C~~~g~~P~pi~v~W~  170 (257)
T 3bn9_D          147 SGGTAALGCLVKDYFPEPVTVSWN  170 (257)
T ss_dssp             ------CCCEEEEEBSSCCEEEET
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEe
Confidence            79999999999986 877 89996

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.91  E-value=8.1e-10  Score=73.95  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=49.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|.|.+.|..+... ...|.|...     ... .|.+...++. ..+..|+.+.|.|.+.|
T Consensus        79 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~l~V~~~-----~~~-~P~i~~~~~~-~~~~~G~~v~L~C~~~g  145 (434)
T 1igy_B           79 NIHLSSLTSD------DSAVYYCVREGEVPYWGQGTTVTVSSA-----KTT-PPSVYPLAPG-SAAQTNSMVTLGCLVKG  145 (434)
T ss_dssp             CEEECSBCGG------GCSEECCCCSSSSCCCCCCEECEECCS-----CCB-CCCEEEECCC-CCCCCTTEEEEEEEEEE
T ss_pred             EEEECCCChH------HCEEEEEEEEccccccCCceEEEEccC-----CCC-CCeEEEcCCc-cccCCCCcEEEEEEEee
Confidence            7999999766      99999999998643222 234444321     001 1444433212 23468999999999999


Q ss_pred             c-CCc-eeEEe
Q psy11568        107 S-PTP-KIEWL  115 (116)
Q Consensus       107 ~-P~p-~i~W~  115 (116)
                      . |.| .++|+
T Consensus       146 ~~P~p~~v~W~  156 (434)
T 1igy_B          146 YFPEPVTVTWN  156 (434)
T ss_dssp             EBSSCCEEEET
T ss_pred             ecCCCeEEEEe
Confidence            7 777 99996

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.91  E-value=6e-09  Score=66.63  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC-Cc-eE----EEEEEEEeC-----c--EeeeeccCCCceEecCCCeEEEeC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA-GV-IL----SRFVHVKAG-----S--VVSLLDIQGPLFRIEPPYRFEFSN   94 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~-~~----~~~~~v~~~-----~--~~~~~~~~~p~~~~~~~~~~~~~~   94 (116)
                      .|.|.++..+      |+|.|.|.+.|.. |. ..    ...|.|...     .  .+... ...+.+...+ ....+.+
T Consensus       102 sL~I~~v~~~------DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~-~~~~~v~~~p-~~~~v~~  173 (291)
T 2gki_A          102 YMELSSLTSE------DSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGG-GSDLVMSQSP-SSLAVSA  173 (291)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECGGGTTCEEEECCCEEEEECC-----------------CCCEECSC-SEEEEET
T ss_pred             EEEECcCCHH------HCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCC-CccceEEcCC-CEEEEcC
Confidence            6999999766      9999999999874 21 11    123333320     0  00000 0112333333 6778899


Q ss_pred             CCcEEEEeeecCcCCc------eeEEe
Q psy11568         95 ESGGRLDCAAQGSPTP------KIEWL  115 (116)
Q Consensus        95 g~~~~l~C~~~g~P~p------~i~W~  115 (116)
                      |+++.|.|.+.+.|.|      .+.|+
T Consensus       174 G~~v~L~C~~~~~~~~~~~~~~~v~W~  200 (291)
T 2gki_A          174 GEKVTMSCKSSQSLFNSRTRKNYLAWY  200 (291)
T ss_dssp             TSCEEEEEEESSCCEETTTTEECEEEE
T ss_pred             CCcEEEEEEcCCccccccccceeEEEE
Confidence            9999999999998876      89997

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.91  E-value=5.8e-09  Score=64.37  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=45.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                      .|.|.++..+      |+|.|.|.+.+..+...  ...|.|...     ... .|.+....+. ..+..|+.+.|.|.+.
T Consensus        80 sL~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~v~~~~~~-~~~~~g~~v~L~C~~~  146 (227)
T 1mju_H           80 YMQLSSLTSD------DSAVYYCANKLGWFPYWGQGTLVTVSAA-----KTT-APSVYPLAPV-CGDTSGSSVTLGCLVK  146 (227)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETTEEEECCCEEEEECSS-----CCB-CCEEEEECCC-C------CEEEEEEEE
T ss_pred             EEEECCCCcc------cCEEEEEEECCCCceEEcCcEEEEEcCC-----CCC-CCEEEEecCC-ccccCCCcEEEEEEee
Confidence            7999999766      99999999998643221  134444421     001 1554433322 2456799999999999


Q ss_pred             Cc-CCc-eeEEe
Q psy11568        106 GS-PTP-KIEWL  115 (116)
Q Consensus       106 g~-P~p-~i~W~  115 (116)
                      |. |.| .++|+
T Consensus       147 g~~P~p~~v~W~  158 (227)
T 1mju_H          147 GYFPEPVTLTWN  158 (227)
T ss_dssp             EEBSSCCEEEEG
T ss_pred             cEeCCCeEEEEe
Confidence            86 777 99996

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.89  E-value=3.8e-09  Score=65.74  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-c-----eE--EEEEEEEeCcEeeeeccCCCce-EecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-V-----IL--SRFVHVKAGSVVSLLDIQGPLF-RIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-~-----~~--~~~~~v~~~~~~~~~~~~~p~~-~~~~~~~~~~~~g~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.+..+ .     ..  ...|.|... ..... .+ |.. +..+ ....+..|+.+
T Consensus        81 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~-~~~~~-~~-p~~~v~~p-~~~~~~~g~~v  150 (242)
T 1hxm_B           81 TLTIHNVEKQ------DIATYYCALWEAQQELGKKIKVFGPGTKLIITDK-QLDAD-VS-PKPTIFLP-SIAETKLQKAG  150 (242)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEECSSTTCEEEEECCCEEEEEESS-CCCSC-CS-CBCCCCCC-CGGGGGSSSCE
T ss_pred             EEEECCCCcc------cCEEEEEeeecCCccccccceeEcCcEEEEEccc-ccCCC-cC-CCceEECC-ChhhcccCCCc
Confidence            6999999766      99999999988631 1     11  134444431 00000 00 211 1112 22234569999


Q ss_pred             EEEeeecCc-CC-ceeEEe
Q psy11568         99 RLDCAAQGS-PT-PKIEWL  115 (116)
Q Consensus        99 ~l~C~~~g~-P~-p~i~W~  115 (116)
                      .|.|.+.|. |. +.++|+
T Consensus       151 ~L~C~~~g~~P~~~~v~W~  169 (242)
T 1hxm_B          151 TYLCLLEKFFPDVIKIHWE  169 (242)
T ss_dssp             EEEEEEEEESSCCEEEEEE
T ss_pred             eEEEEEeeEECCCeEEEEE
Confidence            999999987 64 789996

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.88  E-value=7.5e-09  Score=57.53  Aligned_cols=59  Identities=25%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             CcEEEEEccCCeeeeccc----cceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~----~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|..+....    .......++.+.+..+...+ ....|+|.|.|.|.|..|...+
T Consensus        38 ~p~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-v~~~D~G~Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           38 TPTIEW-YKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR-KSRPDEGVYVCVARNYLGEAVS  100 (117)
T ss_dssp             CCEEEE-EETTEECCCTTTCSSCSEEECTTSCEEESSCCCBT-TBCSSCEEEEEEEEETTEEEEC
T ss_pred             CCeEEE-EECCEeccccCCCCcceeEEecCCcEEEEEEEeCC-CCcCcCEEEEEEEEeCccceEe
Confidence            478999 88998886422    11234455566555442100 0234999999999999998875

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.88  E-value=8e-09  Score=61.84  Aligned_cols=58  Identities=17%  Similarity=0.187  Sum_probs=43.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.++| ++++..+..  ..+....++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|.
T Consensus       142 ~p~v~W-~~~~~~~~~--~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          142 VPDIRW-RKVLEPMPS--TAEISTSGAVLKIFNIQLE------DEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CCEEEE-EETTBCCCT--TCEEETTTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCceEE-EeCCCcCCC--ceeecCCCCEEEEccCChh------hCEEEEEEEEecCCceeeeEEEEEe
Confidence            478999 888887653  2334455679999999766      999999999999987764 445443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.87  E-value=3e-08  Score=60.65  Aligned_cols=73  Identities=15%  Similarity=0.281  Sum_probs=48.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC-ceE--EEEEEEEeCcEeeeeccCCCceE-ecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG-VIL--SRFVHVKAGSVVSLLDIQGPLFR-IEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g-~~~--~~~~~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.+... ...  ...+.|...     ... .|.+. ..+ ...  ..|+.+.|.|.
T Consensus        82 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~~~-~p~v~~~~~-~~~--~~g~~v~L~C~  146 (221)
T 3m8o_H           82 FLQMNSLKSD------DTAMYYCVIRGDVYNRQWGQGTLVTVSSA-----SPT-SPKVFPLSL-CST--QPDGNVVIACL  146 (221)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESCTTCCCBBCCEEEEECSC-----CCB-CCEEEEEEC-CSC--CCTTEEEEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEECCChhheECCCEEEEEecC-----CCC-CCeEEEecC-ccc--ccCCCEEEEEE
Confidence            5999999766      99999999998731 111  234444321     001 25544 233 222  67999999999


Q ss_pred             ecC-cCC--ceeEEe
Q psy11568        104 AQG-SPT--PKIEWL  115 (116)
Q Consensus       104 ~~g-~P~--p~i~W~  115 (116)
                      +.+ .|.  +.++|+
T Consensus       147 ~~~~~P~~~~~v~W~  161 (221)
T 3m8o_H          147 VQGFFPQEPLSVTWS  161 (221)
T ss_dssp             EEEEBSSCSEEEEES
T ss_pred             EEeeECCCCEEEEEE
Confidence            998 676  489996

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.87  E-value=4.9e-09  Score=65.62  Aligned_cols=77  Identities=18%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             EEecCCCCCCCCCCCCceEEEEEEEcCCC---ce-E---EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         29 LMFPPFPETGFRPDVHSTVYRCRASNEAG---VI-L---SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        29 l~i~~v~~~~~~~~~d~G~y~C~a~n~~g---~~-~---~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      |.|.++..+      |+|.|.|.+.+..+   .. .   ...+.|...  +. ... .|.+...++....+..|+.+.|.
T Consensus        76 L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~--~~-~~~-~P~v~~~~~~~~~~~~g~~~~L~  145 (253)
T 3to4_D           76 LRLQVANMS------QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLED--LK-NVF-PPEVAVFEPSEAEISHTQKATLV  145 (253)
T ss_dssp             CEEEEESCS------SCEEEEEEEECSCCSTTCCEEECCCEEEEEESC--ST-TCB-CCEEEEEECCHHHHHHHSEEEEE
T ss_pred             EEEccCChh------hCeEEEEEEecCCCCcccceEECCCEEEEEecC--CC-CCC-CCeEEEeCCChhhcccCCceEEE
Confidence            999999766      99999999987643   11 1   123444321  00 001 14443332222233346899999


Q ss_pred             eeecC-cCCc-eeEEe
Q psy11568        102 CAAQG-SPTP-KIEWL  115 (116)
Q Consensus       102 C~~~g-~P~p-~i~W~  115 (116)
                      |.+.| .|.| .++|+
T Consensus       146 C~~~g~~P~~i~v~W~  161 (253)
T 3to4_D          146 CLATGFYPDHVELSWW  161 (253)
T ss_dssp             EEEEEEBSSCEEEEEE
T ss_pred             EEEceEECCcEEEEEE
Confidence            99999 6666 88996

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.86  E-value=6.3e-08  Score=61.59  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEee--CCeEEecC-CCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeec
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLD   76 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~-v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~   76 (116)
                      .|.++| +++|..+...........  .+.|.|.+ +..+      |+|.|+|.|.|..|.... ..|.|....      
T Consensus       133 ~p~i~W-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~------d~G~Y~C~a~N~~G~~~~~~~l~v~~~P------  199 (305)
T 2nzi_A          133 DPVITW-QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK------DAGFYVVCAKNRFGIDQKTVELDVADVP------  199 (305)
T ss_dssp             CCEEEE-EESSSBCCSSSSCEEEECSSEEEEEETTCCCST------TCEEEEEEEEETTEEEEEEEEEEEEBCC------
T ss_pred             CCEEEE-EECCEECCCCCcEEEEEcCCceEEEEecCCccC------ccEEEEEEEEeCCCceeeEEEEEEecCC------
Confidence            378999 888888764333333322  23788888 8655      999999999999988764 556655320      


Q ss_pred             cCCCceE--ec-CCCeEEE------eCCCcEEEEeeecCcCCceeEEe
Q psy11568         77 IQGPLFR--IE-PPYRFEF------SNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        77 ~~~p~~~--~~-~~~~~~~------~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+ |...  .. ......+      ..|....+.|.+...|.+...|.
T Consensus       200 ~~-p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~  246 (305)
T 2nzi_A          200 DP-PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWL  246 (305)
T ss_dssp             CC-CEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEE
T ss_pred             CC-CCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccE
Confidence            00 2111  00 0111111      12455567787777777777774

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.4e-08  Score=55.26  Aligned_cols=47  Identities=17%  Similarity=0.384  Sum_probs=35.5

Q ss_pred             EEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      |.| +++|+.+....+......+.  .|.|.++..+      |+|.|+|.+.|..+
T Consensus        41 v~W-~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~~   89 (104)
T 2e6p_A           41 ATW-YKDGQKVEESELLVVKMDGRKHRLILPEAKVQ------DSGEFECRTEGVSA   89 (104)
T ss_dssp             CEE-EETTEECCCBTTBEEEEETTEEEEEESSCCTT------TCEEEEEECSSCCC
T ss_pred             cEE-eeCCEECCCCCCEEEEeCCCEEEEEECCCChh------hCEEEEEEECCceE
Confidence            899 99999886544433333333  6999999766      99999999999854

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.86  E-value=1.1e-08  Score=61.12  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=42.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.++| +++|..+...........++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.
T Consensus       132 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~  192 (194)
T 2a38_A          132 TPVVKF-YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE------DSGTYSVNATNSVGRATSTAELL  192 (194)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEEEETTEEEEEEEEECGG------GCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEE-EECCEECCCCCcEEEEEcCCEEEEEECCCChh------cCeEEEEEEEeCCCceEEEEEEE
Confidence            378999 89999886543333333333  6999999766      999999999999987664 4443

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.85  E-value=2.6e-09  Score=75.41  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc---eEE---EEEEEEeCcEeee
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV---ILS---RFVHVKAGSVVSL   74 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~---~~~---~~~~v~~~~~~~~   74 (116)
                      .|+++| +++|.++......+....++.|.|.++..+      |+|.|.|.|.+..+.   ...   ..|.|..+     
T Consensus       561 ~a~v~W-~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~------DsG~Y~C~A~e~~~~~~~~~~~~~~~l~V~v~-----  628 (663)
T 1olz_A          561 LARVFW-KFQNGVLKAESPKYGLMGRKNLLIFNLSEG------DSGVYQCLSEERVKNKTVFQVVAKHVLEVKVV-----  628 (663)
T ss_dssp             TCEEEE-EESSSBCCCCSSSBCCTTTTCEEECSCCGG------GCEEEEEEEEEECSSSEEEEEEEEEEEEEEC------
T ss_pred             CCcEEE-EECCeeccccCcceEEecCCeEEEEecCcc------cCeEEEEEEEECccCCCceEEEEEEEEEEEeC-----
Confidence            478999 888877654333233334678999999765      999999999998422   221   33444443     


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                           |.+...|.......+|+.+.+.|.+.+
T Consensus       629 -----P~~~~~p~~~~~~~~g~~~~~~~~~~~  655 (663)
T 1olz_A          629 -----PKPVVAPTLSVVQTEGSRIATKVLVAS  655 (663)
T ss_dssp             --------------------------------
T ss_pred             -----CccCCCCCChhhhhcCCceEEEeeccc
Confidence                 777666655667778999999998754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.83  E-value=5.7e-08  Score=60.13  Aligned_cols=74  Identities=22%  Similarity=0.397  Sum_probs=44.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE--cCCCc---eE--EEEEEEEeCcEeeeeccCCCceEe-cCCCeEEEeCC-CcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS--NEAGV---IL--SRFVHVKAGSVVSLLDIQGPLFRI-EPPYRFEFSNE-SGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~--n~~g~---~~--~~~~~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~~g-~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.  +..+.   ..  ...|.|...     ... .|.+.. .+ .. .+..| +.+
T Consensus        79 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~v~~~~p-~~-~~~~g~~~v  144 (232)
T 1dn0_B           79 SLKLSSVTAA------DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG-----SAS-APTLFPLVS-CE-NSPSDTSSV  144 (232)
T ss_dssp             EEEECSCCGG------GCEEEEEEECSSTTSCSCCSEECCCEEEEECSS-----CCB-CCEEEEEEC-C-------CCSE
T ss_pred             EEEECCCCcc------cCEEEEEEEecCCcCCchhhhcccceEEEEccC-----CCC-CCceEEecc-cc-ccCCCCCcE
Confidence            7999999766      9999999998  43121   11  134444431     001 144433 33 22 34467 999


Q ss_pred             EEEeeecCc-CCc-eeEEe
Q psy11568         99 RLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        99 ~l~C~~~g~-P~p-~i~W~  115 (116)
                      .|.|.+.|. |.| .++|+
T Consensus       145 ~L~C~~~g~~P~p~~v~W~  163 (232)
T 1dn0_B          145 AVGCLAQDFLPDSITFSWK  163 (232)
T ss_dssp             EEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEEEEEeCCCeEEEEE
Confidence            999999986 877 99997

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=6.8e-09  Score=56.46  Aligned_cols=57  Identities=14%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~   68 (116)
                      |.|.| +++|..+....+......+.  .|.|.++..+      |+|.|+|.+.|.   .....|.|..
T Consensus        37 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~---~~~~~l~V~~   95 (103)
T 2edf_A           37 TPVHW-LKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK------DAGEYTCEVEAS---KSTASLHVEE   95 (103)
T ss_dssp             CCCCE-EESSCBCCCSSSEEEEEETTEEEEEESSCCTT------TCSEEEEECSSC---EEEEEEEECC
T ss_pred             CcEEE-EECCEEccCCCCEEEEECCCEEEEEECCCCcc------cCEEEEEEEccC---CcEEEEEEeC
Confidence            57899 89998886433333333333  6999999766      999999999993   2234455543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.83  E-value=2.1e-08  Score=59.97  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEee--CCeEEecC-CCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS--NGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~--~~~l~i~~-v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.++| +++|..+...........  .+.|.|.+ +..+      |+|.|+|.|.|..|.... ..|.|
T Consensus       133 ~p~i~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~------d~G~Y~C~a~N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          133 DPVITW-QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK------DAGFYVVCAKNRFGIDQKTVELDV  195 (197)
T ss_dssp             CCEEEE-EESSCEECSSSSCEEEECSSEEEEECTTCCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCcEEE-EECCEEeecCCCEEEEEcCCceEEEEeCCCCcc------cCEeEEEEEEeCCCcEeEEEEEEE
Confidence            378999 889988864333333222  23788988 8665      999999999999987653 44444

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.83  E-value=1.6e-08  Score=61.39  Aligned_cols=60  Identities=27%  Similarity=0.386  Sum_probs=46.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      .|.|+| +++|..+... ..+....++.|.|.++..+      |+|.|+|.|.|..|...+  ..|.|..
T Consensus       139 ~p~i~W-~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          139 TPNIYW-IKNQTKVDMS-NPRYSLKDGFLQIENSREE------DQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             CCEEEE-EETTEECCTT-STTEEEETTEEEECSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCeEEE-EECCeEcccC-CCeEEccCCeEEEccCChh------hCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            368999 8999888642 2244566789999999766      999999999999998864  5666654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.82  E-value=1.2e-08  Score=55.56  Aligned_cols=57  Identities=14%  Similarity=0.173  Sum_probs=39.1

Q ss_pred             cEEEEEccCCeeeecccc--ceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKD--LRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~--~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~   68 (116)
                      |.|.| +++|..+.....  .+....+  ..|.|.++..+      |+|.|+|.+.|.   ..+..|.|..
T Consensus        36 ~~v~W-~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~---~~~~~l~V~~   96 (103)
T 1x44_A           36 ANVKW-FKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKA------DAAEYSVMTTGG---QSSAKLSVDL   96 (103)
T ss_dssp             CCCEE-EETTEECCCSTTCSEEEEEETTEEEEEEEEECTT------TCSEEEEEETTE---EEEEEEEEEC
T ss_pred             CeEEE-EECCEECCCCCceEEEEEEcCCEEEEEECCCCcc------cCEEEEEEECCC---cEEEEEEEeC
Confidence            67899 999998875442  2333333  37999999766      999999999982   2234455543

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.82  E-value=1e-08  Score=56.21  Aligned_cols=57  Identities=14%  Similarity=0.202  Sum_probs=37.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~   68 (116)
                      |.|+| ++++..+....+......+.  .|.|.++..+      |+|.|+|.+.|.   .....|.|..
T Consensus        36 p~v~W-~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~---~~~~~l~V~~   94 (108)
T 2dm7_A           36 APVEW-KKGPETLRDGGRYSLKQDGTRCELQIHDLSVA------DAGEYSCMCGQE---RTSATLTVRA   94 (108)
T ss_dssp             CCCEE-ESSSSBCCSSSSCEEEEETTEEEEEESSCCTT------TCSEEEEEETTE---EEEEECEEEC
T ss_pred             CeeEE-EECCEECCCCCCEEEEecCCEEEEEECCCCcc------cCEEEEEEEcCC---EEEEEEEEec
Confidence            67899 88888876433333332332  4999999766      999999999653   1234455544

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.82  E-value=1.1e-08  Score=55.87  Aligned_cols=52  Identities=19%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             cEEEEEccCCeeeecccc---ceEEe-------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVKD---LRIAL-------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~---~~~~~-------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      |.+.| +++|..+.....   .+...       ..+.|.|.++..+      |+|.|+|.+.|..|...
T Consensus        42 ~~i~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~g~~~  103 (112)
T 3so5_A           42 MTFAW-XXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT------SEGXYQCVISNHFGSSY  103 (112)
T ss_dssp             CEEEE-EETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG------GCEEEEEEEEETTEEEE
T ss_pred             EEEEE-ccCCcccccccccceeeeeccCCCccccceEEEEeccccc------cCCeEEEEEEeCCCcEE
Confidence            68999 899888753211   11111       1357999999766      99999999999998754

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.82  E-value=2.9e-08  Score=53.22  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      |.|.| +++|..+....+......+.  .|.|.++..+      |+|.|+|.+
T Consensus        37 ~~v~W-~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a   82 (95)
T 2k1m_A           37 VKVRW-QRGGSDISASNKYGLATEGTRHTLTVREVGPA------DQGSYAVIA   82 (95)
T ss_dssp             CCCEE-ECSSSEECSSTTCEEEEETTEEEEEESSCCTT------CCSEEEEEE
T ss_pred             CeEEE-EECCEECCCCCcEEEEEcCCEEEEEEcCCCcc------cCEEEEEEE
Confidence            67899 89998886544433333333  6999999766      999999999

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.81  E-value=1.9e-08  Score=54.42  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=33.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      .|.|.| +++|..+....+.+....+.  .|.|.++..+      |+|.|+|.|
T Consensus        36 ~~~v~W-~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a   82 (100)
T 2yuv_A           36 KLEVKW-YKNGQEIRPSTKYIFEHKGCQRILFINNCQMT------DDSEYYVTA   82 (100)
T ss_dssp             TSCEEE-EESSCBCCCBTTEEEEEETTEEEEEEEEECTT------TCCEEEEEE
T ss_pred             CceEEE-EECCEECCCCCCEEEEecCCEEEEEEcCCCcC------cCEEEEEEE
Confidence            378999 89998886543433333333  5999999766      999999999

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.81  E-value=2.5e-09  Score=65.19  Aligned_cols=51  Identities=20%  Similarity=0.266  Sum_probs=40.2

Q ss_pred             cEEEEEccCCeeeeccc-cceEEeeCCeEEecCC-CCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          2 YVLLWLIRDNTVIAYVK-DLRIALSNGSLMFPPF-PETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i~~v-~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      |.|+| +++|..+.... .......++.|.|.++ ..+      |+|.|+|.|.|..|..
T Consensus       141 p~i~W-~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~------D~G~Y~C~A~N~~g~~  193 (204)
T 1sy6_A          141 SEILW-QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE------QSGYYVCYPRGSKPED  193 (204)
T ss_dssp             SCEEE-EETTEEESCCTTCTTEEEETTEEEETTCCHHH------HCEEEEEEETTSCGGG
T ss_pred             CceEE-EECCEECCCccCCceEecCCCEEEEeeCCccc------cCEEEEEEeccCCCCc
Confidence            67999 89998886432 2223345789999999 877      9999999999999864

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.80  E-value=7.7e-09  Score=56.61  Aligned_cols=46  Identities=11%  Similarity=0.142  Sum_probs=34.9

Q ss_pred             EEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .+.| +++|..+....+......+  ..|.|.++..+      |+|.|+|.+.|.
T Consensus        38 ~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~   85 (106)
T 2dlt_A           38 TGKW-YKNGVEVRPSKRITISHVGRFHKLVIDDVRPE------DEGDYTFVPDGY   85 (106)
T ss_dssp             EEEE-EESSCBCCCCSSCEEEEETTEEEEEESSCCTT------TCSCEEEEEETS
T ss_pred             ceEE-EcCCEECcCCCCEEEEEeCCEEEEEECCCCcC------CCEEEEEEEccC
Confidence            3899 8999888654443333333  27999999766      999999999998

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.79  E-value=2.2e-08  Score=62.72  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC----CceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA----GVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDC  102 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~----g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  102 (116)
                      .|.|.+++.+      |+|.|.|.+.+..    .... ...|.|...     ... .|.+...+ ....+..|+.+.|.|
T Consensus        80 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~i~~~~-~~~~~~~g~~v~L~C  146 (253)
T 3liz_H           80 FLQMSSLKSE------DTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA-----KTT-PPSVYPLA-PGSAAQTNSMVTLGC  146 (253)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCBTTTBCCEECCCEEEEECSS-----CCB-CCEEEEEC-C------CCEEEEEE
T ss_pred             EEEECCCChh------hCEEEEEEEecCCcceeeEECCCEEEEEecc-----CCC-CCeEEEec-CCcccCCCCcEEEEE
Confidence            4999999766      9999999998862    1111 134444310     001 25554333 233456799999999


Q ss_pred             eecC-cCCc-eeEEe
Q psy11568        103 AAQG-SPTP-KIEWL  115 (116)
Q Consensus       103 ~~~g-~P~p-~i~W~  115 (116)
                      .+.| .|.| .++|+
T Consensus       147 ~~~g~~P~~~~v~W~  161 (253)
T 3liz_H          147 LVKGYFPEPVTVTWN  161 (253)
T ss_dssp             EEEEEBSSCCEEEEG
T ss_pred             EEeeEeCCCeEEEEE
Confidence            9998 6777 89996

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.78  E-value=2.6e-08  Score=55.03  Aligned_cols=56  Identities=14%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~   68 (116)
                      |.++| +++|.++....+......++  .|.|.++..+      |+|.|+|.+    |... ...|.|..
T Consensus        47 p~v~W-~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           47 APVEW-WKGHETLRDGDRHSLRQDGARCELQIRGLVAE------DAGEYLCMC----GKERTSAMLTVRA  105 (113)
T ss_dssp             CCCEE-EESSSBCCCSSSEEEEEETTEEEEEECSCCST------TCEEEEEEE----TTEEEEEEEEECC
T ss_pred             CcEEE-EECCEECCCCCcEEEEECCCEEEEEECCCChh------hCEEEEEEe----CCCCEEEEEEEeC
Confidence            67899 88998886433333333332  7999999766      999999999    3333 34455544

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.78  E-value=2.7e-08  Score=69.32  Aligned_cols=59  Identities=19%  Similarity=0.243  Sum_probs=45.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+| +++++++...........++  +|.|.++.++      |+|.|+|.|.|..|...+ ..|.|
T Consensus       511 ~P~v~W-~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~------D~G~Yt~~A~N~~G~~~~~v~l~V  572 (573)
T 3uto_A          511 PPVVTW-HKDDRELKQSVKYMKRYNGNDYGLTINRVKGD------DKGEYTVRAKNSYGTKEEIVFLNV  572 (573)
T ss_dssp             CCEEEE-EETTEECCSSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEE-EECCEEcccCCcEEEEEcCCEEEEEEcCCCcc------cCcEEEEEEEeCCCcEEEEEEEEE
Confidence            489999 99999997644444444444  6889999766      999999999999998885 55544

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.78  E-value=2.1e-08  Score=66.35  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=57.6

Q ss_pred             EEEEEccCCeeeecc-ccceEEee------CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeee
Q psy11568          3 VLLWLIRDNTVIAYV-KDLRIALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSL   74 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~-~~~~~~~~------~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~   74 (116)
                      .|+| ++++..+... ........      ...|.|..+..+      |+|.|+|.+.+..+... ...+.+...     
T Consensus       203 ~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------D~g~Y~C~~~~~~~~~~~~~~v~~~~~-----  270 (376)
T 2aty_A          203 QFSW-FVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWL------NGKEFKCRVNSAAFPAPIEKTISKTKG-----  270 (376)
T ss_pred             EEEE-EECCccccCcccCCCCcccCCcEEEEEEEEechHhcc------CCCEEEEEEecCCCCCceEEEEcCCCC-----
Confidence            6999 6666554321 11111111      225888888655      99999999999876432 222211100     


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecCc-C-CceeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-P-TPKIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P-~p~i~W~  115 (116)
                      ...+ |.+...+ .......|+.+.|.|.+.|. | .+.++|+
T Consensus       271 ~~~~-P~v~v~~-~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~  311 (376)
T 2aty_A          271 RPKA-PQLYTIP-PPKEQMAKDKVSLTCMITDFFPEDITVEWQ  311 (376)
T ss_pred             CCcC-CeEEeeC-CCHHHhcCCceEEEEEEEEeECCCcEEEEE
Confidence            0112 5555544 23333458999999999996 3 4588996

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.77  E-value=1.3e-08  Score=68.06  Aligned_cols=105  Identities=10%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             EEEEEccCCeeeeccccceE-----EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCc-Eeee-
Q psy11568          3 VLLWLIRDNTVIAYVKDLRI-----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGS-VVSL-   74 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~-----~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~-~~~~-   74 (116)
                      .|+| +++|..+........     ....+.|.|.++..+      | |.|+|.+.|..|... ...+.+.... .+.. 
T Consensus       152 ~v~W-~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~  223 (434)
T 1igy_B          152 TVTW-NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRP------S-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCIC  223 (434)
T ss_dssp             EEEE-TTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTT------S-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCC
T ss_pred             EEEE-eeCCcCCCeEecCceecCCcEEEEEEEEEcchhcC------C-CcEEEEEEeCCCCccceeeccCCCCCCccccC
Confidence            8999 888875321000000     111235888888544      8 999999999988643 2222221000 0000 


Q ss_pred             -eccCCCceEecCCCeEE-EeCCCcEEEEeeecCcC----CceeEEeC
Q psy11568         75 -LDIQGPLFRIEPPYRFE-FSNESGGRLDCAAQGSP----TPKIEWLI  116 (116)
Q Consensus        75 -~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~g~P----~p~i~W~~  116 (116)
                       .... |.+...++.... +..|+.+.|.|.+.|.|    .+.++|+.
T Consensus       224 ~~~~~-p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k  270 (434)
T 1igy_B          224 TVPEV-SSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFV  270 (434)
T ss_dssp             CCSSS-CCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBS
T ss_pred             CCCcC-cEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEe
Confidence             0000 333333322222 67899999999999984    35899973

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.77  E-value=2.1e-08  Score=63.72  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC--------CCceE--EEEEEEEe-CcE----eeeeccCCCceEecCCCeEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE--------AGVIL--SRFVHVKA-GSV----VSLLDIQGPLFRIEPPYRFEF   92 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~--------~g~~~--~~~~~v~~-~~~----~~~~~~~~p~~~~~~~~~~~~   92 (116)
                      .|.|.++..+      |+|.|.|.+.+.        .....  ...|.|.. +..    ......+.+.+...+ . ..+
T Consensus        80 sL~I~~v~~~------DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p-~-~~v  151 (280)
T 3fku_X           80 YMDLRSLRSE------DTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPP-S-VSK  151 (280)
T ss_dssp             EEEECSCCST------TCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCS-E-EEE
T ss_pred             EEEECCCChh------hCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCC-c-EEE
Confidence            6999999766      999999999987        11111  12333332 000    000000113333333 4 888


Q ss_pred             eCCCcEEEEeeecC-cC-CceeEEe
Q psy11568         93 SNESGGRLDCAAQG-SP-TPKIEWL  115 (116)
Q Consensus        93 ~~g~~~~l~C~~~g-~P-~p~i~W~  115 (116)
                      .+|+++.|.|.+.+ .+ .+.+.|+
T Consensus       152 ~~G~~v~L~C~~~~~~~~~~~v~W~  176 (280)
T 3fku_X          152 GLRQTATLTCTGNSNNVGNQGAAWL  176 (280)
T ss_dssp             CTTCCEEEEEECCCCCCCTTCCEEE
T ss_pred             ecCCCEEEEEEecCCCCCCceEEEE
Confidence            99999999999998 44 4889996

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.77  E-value=2.4e-08  Score=63.03  Aligned_cols=75  Identities=19%  Similarity=0.299  Sum_probs=48.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce-E---EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEee
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L---SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCA  103 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~---~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  103 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.. .   ...|.|...     ... .|.+...++.. .+..|+.+.|.|.
T Consensus        86 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-----~~~-~P~v~~~~p~~-~v~~g~~v~L~C~  152 (261)
T 2xqy_G           86 YIQLSSLTSE------DSAVYYCGRLGYVYGFDYWGQGTTLTVSSA-----KTT-APSVYPLAPVC-GDTTGSSVTLGCL  152 (261)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECTTSSEEEECCCEEEEECSS-----CCB-CCEEEEECCCC-C--CCSEEEEEEE
T ss_pred             EEEEcCCCcc------cCeEEEEEEecCCCcceEECCCEEEEEccC-----CCC-CCeEEEeCCCc-cccCCCcEEEEEE
Confidence            7999999766      9999999999975321 1   133444321     001 15444333222 3567999999999


Q ss_pred             ecCc-CCc-eeEEe
Q psy11568        104 AQGS-PTP-KIEWL  115 (116)
Q Consensus       104 ~~g~-P~p-~i~W~  115 (116)
                      +.+. |.| .++|+
T Consensus       153 ~~g~~P~~i~v~W~  166 (261)
T 2xqy_G          153 VKGYFPEPVTLTWN  166 (261)
T ss_dssp             EEEEBSSCCEEEEG
T ss_pred             EEeEeCCCCEEEEe
Confidence            9985 777 99996

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.8e-09  Score=57.88  Aligned_cols=57  Identities=5%  Similarity=0.030  Sum_probs=39.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~   68 (116)
                      |.+.| ++||.++....+.+....+.  .|.|.++..+      |+|.|+|.+.|..   .+..|.|..
T Consensus        39 ~~v~W-~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~~~~---~~a~L~V~~   97 (104)
T 2eny_A           39 DPAMW-TVGGKTVGSSSRFQATRQGRKYILVVREAAPS------DAGEVVFSVRGLT---SKASLIVRE   97 (104)
T ss_dssp             SCBCC-BSSSSBCSBCSSCEEEEETTEEEEEECSCCTT------TCSCEEEEETTEE---EEECEEEEC
T ss_pred             ceeEE-EECCEECCCCCCEEEEEcCCEEEEEECCCCHH------HCEEEEEEECCee---EEEEEEEeC
Confidence            35899 99999887544444444443  6999999766      9999999986632   234455544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.77  E-value=4.3e-09  Score=63.16  Aligned_cols=47  Identities=13%  Similarity=0.360  Sum_probs=37.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.|+| ++||.++.....     .++.|.|.++..+      |+|.|+|.|.|..|..
T Consensus       133 ~p~i~W-~k~g~~i~~~~~-----~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          133 DKTIKW-LKDGSIISPLNA-----TKNTWNLGNNAKD------PRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSCEEE-EETTEECCCSSC-----CSSCCEEEETTSC------CEEEEEEEESSCEEEE
T ss_pred             CCeEEE-EECCEECcccCC-----CcceEEECCCCcC------cCEEEEEEEEcCcCCc
Confidence            478999 999998863221     4568999999766      9999999999998755

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.76  E-value=3.7e-08  Score=58.64  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=43.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      .|.++| +++|..+..... .....++.|.|.++..+      |+|.|+|.+.|..|...+  ..|.|..
T Consensus       129 ~~~v~W-~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          129 KPSVSW-IKGDSALRENSR-IAVLESGSLRIHNVQKE------DAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             CCEEEE-EETTEECCCCSS-EEECTTSCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CceEEE-EeCCEEccCCCc-EEEecCCcEEEecCChh------hCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            368999 889988764222 22345668999999766      999999999999987754  4454443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.75  E-value=5.7e-08  Score=58.99  Aligned_cols=54  Identities=24%  Similarity=0.449  Sum_probs=40.9

Q ss_pred             CcEEEEEccCCeeeecc------ccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYV------KDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~------~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|.++...      ...+. ...++.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus       138 ~~~v~W-~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~  198 (217)
T 2vr9_A          138 EPTLIW-IKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI------DEGNYKCIAQNLVGTRES  198 (217)
T ss_dssp             CCEEEE-EETTEEECCCCCC---CCCSEEEETTTEEEESSCCST------TCEEEEEEEEETTEEEEC
T ss_pred             CCeEEE-EECCcCCCcccccccccCCcEEecCCCcEEEeeCCHH------HCeEEEEEEEcccceecc
Confidence            378999 8999988631      11122 334568999999766      999999999999988774

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.75  E-value=4.2e-08  Score=58.39  Aligned_cols=53  Identities=25%  Similarity=0.364  Sum_probs=39.9

Q ss_pred             CcEEEEEccCCeeeeccccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.+.| +++|..+......+. ...++.|.|.++..+      |+|.|+|.|.|..+...
T Consensus       129 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~  182 (191)
T 1epf_A          129 PPTIIW-KHKGRDVILKKDVRFIVLSNNYLQIRGIKKT------DEGTYRCEGRILARGEI  182 (191)
T ss_dssp             CCEEEE-EETTEEGGGGCCTTEEECTTSCEEETTCCGG------GCEEEEEEEEEGGGTEE
T ss_pred             CCEEEE-EECCEEeeccCCceEEEecCCeEEECCCChh------hCEEEEEEEEEecceeE
Confidence            378999 889988864333333 345668999999766      99999999999985443

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.75  E-value=1.2e-08  Score=56.00  Aligned_cols=46  Identities=11%  Similarity=0.289  Sum_probs=34.1

Q ss_pred             cEEEEEccCCeeeecc-ccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568          2 YVLLWLIRDNTVIAYV-KDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~-~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      |.|.| +++|+++... ........++  .|.|.++..+      |+|.|+|.+.+
T Consensus        45 ~~v~W-~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~~   93 (104)
T 1pd6_A           45 AEVKW-LKNGQEIQMSGSKYIFESIGAKRTLTISQCSLA------DDAAYQCVVGG   93 (104)
T ss_dssp             SCCEE-EESSSEECCCSSSSEEEEETTEEEEEECSCSSS------SCEEEEEEETT
T ss_pred             CEEEE-EECCEECCCCCCeEEEEecCCEEEEEECCCCcc------cCEEEEEEECC
Confidence            67899 8999988653 3333333333  7999999766      99999999955

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.74  E-value=3.3e-08  Score=66.97  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=41.0

Q ss_pred             CcEEEEEccCCeeeecc-ccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYV-KDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~-~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+| +++|..+... ...++ ...+++|.|.++.++      |+|.|+|.|.|..|.... ..+.|
T Consensus       414 ~p~i~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~~~~~l~V  475 (477)
T 2id5_A          414 PPAILW-LSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ------DNGTYLCIAANAGGNDSMPAHLHV  475 (477)
T ss_dssp             CCEEEE-ECTTSCBC-------CEECTTSCEEESSCCST------TCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEE-EECCccccccCCCceEEeCCCCEEEEeeCChH------HCEEEEEEEEeCCCcEEEEEEEEE
Confidence            489999 8887766431 12233 334678999999766      999999999999988764 44444

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.74  E-value=1.7e-08  Score=61.61  Aligned_cols=54  Identities=17%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CcEEEEEccCCeee-ec-cccceE-EeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVI-AY-VKDLRI-ALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~-~~-~~~~~~-~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++..+ .. ..+.++ ...+++|.|   .++..+      |+|.|+|.|.|..|.+..
T Consensus       135 ~P~v~W-~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~------D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          135 HPHVQW-LMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP------WHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCEEEE-CCC------------CCEECTTSCEEEEEEEEECSS------CCCCEEEEEESSSCEEEE
T ss_pred             CCEEEE-EECCeeecCcccccceEEEeCCCCEEEEEECCCCHH------HCEEEEEEEEcCCCEEEE
Confidence            489999 5554333 22 122233 334555544   577555      999999999999998775

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.74  E-value=1.4e-07  Score=56.17  Aligned_cols=59  Identities=15%  Similarity=0.269  Sum_probs=40.5

Q ss_pred             CcEEEEEcc--CCeeeecc-ccceEEe-e-CC--eEEecCCC-CCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIR--DNTVIAYV-KDLRIAL-S-NG--SLMFPPFP-ETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~--~g~~~~~~-~~~~~~~-~-~~--~l~i~~v~-~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.++| ++  +|.++... ...++.. . ++  .|.|.++. .+      |+|.|+|.|.|..|.... ..|.|
T Consensus       121 ~p~i~W-~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~------d~G~Y~C~a~N~~g~~~~~~~l~V  188 (190)
T 2wv3_A          121 HPEWMW-RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITE------DPGEYECNATNSIGSASVSTVLRV  188 (190)
T ss_dssp             CCEEEE-EEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTT------SCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCceEE-EEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccC------CCEEEEEEEEecCCcceeEEEEEE
Confidence            378999 66  78777531 1223322 2 22  69999997 45      999999999999997764 44444

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.73  E-value=2.6e-08  Score=61.56  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=47.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC--CC-ceE--EEEEEEEeC-cEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE--AG-VIL--SRFVHVKAG-SVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~--~g-~~~--~~~~~v~~~-~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.+.  .. ...  ...|.|... ..+.....+.+.+ ..+ ....+..|+.+.|.
T Consensus        80 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v-~~p-~~~~v~~g~~~~L~  151 (230)
T 1ypz_F           80 ILTIYSLEEE------DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTI-FLP-SVAETNLHKTGTYL  151 (230)
T ss_dssp             EEEECSCCGG------GCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCE-ECC-CHHHHHHHSCEEEE
T ss_pred             EEEECcCChh------hCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceE-ECC-CchhhccCCcceEE
Confidence            6999999766      999999999985  11 111  134555420 0000000011222 222 33334458899999


Q ss_pred             eeecCc-CC-ceeEEe
Q psy11568        102 CAAQGS-PT-PKIEWL  115 (116)
Q Consensus       102 C~~~g~-P~-p~i~W~  115 (116)
                      |.+.|. |. +.++|+
T Consensus       152 C~~~g~~P~~~~v~W~  167 (230)
T 1ypz_F          152 CLLEAFFPDVIRVYWK  167 (230)
T ss_dssp             EEEEEESSCCCEEEEE
T ss_pred             EEEeeecCCCeEEEEE
Confidence            999986 75 599997

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=1.1e-08  Score=55.55  Aligned_cols=47  Identities=15%  Similarity=0.364  Sum_probs=34.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      |.|+| +++|..+....+......+  ..|.|.++..+      |+|.|+|.+.+.
T Consensus        40 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~   88 (102)
T 2eo1_A           40 TEVTW-YKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQA------EAGEYSCEAGGQ   88 (102)
T ss_dssp             SCCEE-EETTEECCCCSSEEEEEETTEEEEEETTCCTT------TCSCEEEEETTE
T ss_pred             CceEE-EECCEECCCCCCEEEEEcCCEEEEEECCCCcc------cCEEEEEEcCCC
Confidence            67899 9999988654333333333  37999999766      999999999654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.73  E-value=4.5e-08  Score=58.36  Aligned_cols=59  Identities=17%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCC-CCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPE-TGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~-~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.++| +++|..+...........+  +.|.|.++.+ +      |+|.|+|.|.|..|.... ..|.|
T Consensus       132 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V  194 (197)
T 3lcy_A          132 VPAMTW-FHGQKLLQNSENITIENTEHYTHLVMKNVQRKT------HAGKYKVQLSNVFGTVDAILDVEI  194 (197)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEECSSEEEEEESSCCHHH------HCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCeeEE-eECCEECCCCCceEEEEcCCEEEEEEccccchh------hCceEEEEEEcCcCceEEEEEEEE
Confidence            478999 8899988643333222222  4799999963 4      999999999999987764 44444

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.72  E-value=4e-09  Score=59.17  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             cE-EEEEccCCeeeeccccceEEe----eCC----eEEecCCCCCCCCCCCCc-eEEEEEEEcCCCceEE
Q psy11568          2 YV-LLWLIRDNTVIAYVKDLRIAL----SNG----SLMFPPFPETGFRPDVHS-TVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~-v~W~~~~g~~~~~~~~~~~~~----~~~----~l~i~~v~~~~~~~~~d~-G~y~C~a~n~~g~~~~   61 (116)
                      |. |+| ++++..+......++..    .++    .|.|.++..+      |. |.|+|.|.|..|....
T Consensus        43 p~~i~W-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~~G~Y~C~a~N~~G~~~~  105 (122)
T 2cry_A           43 PDRIAW-SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA------DFQTIYNCTAWNSFGSDTE  105 (122)
T ss_dssp             CSEEEE-ESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH------HHHSCEEEEEECSSCEEEE
T ss_pred             CcEeEE-EECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChh------hCCceEEEEEECCCCeEEE
Confidence            44 999 88888876421122221    123    7999999765      98 9999999999998764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=1.2e-08  Score=54.84  Aligned_cols=43  Identities=16%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      |.+.| +++|..+...       .+..|.|.++..+      |+|.|+|.+.|..+.
T Consensus        40 ~~v~W-~k~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~   82 (96)
T 2ens_A           40 PQIHW-MKDGVPLPLP-------PSPVLILPEIGPQ------DQGTYSCVATHSSHG   82 (96)
T ss_dssp             CCCCC-EESSSBCSSC-------CCSEEEEESCCTT------TCEEEECEECCSSCC
T ss_pred             CEEEE-EECCEECcCC-------CCCEEEECCCCcc------cCEEEEEEEEeCCCC
Confidence            67889 7888776531       3458999999766      999999999997543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.72  E-value=6.6e-08  Score=57.15  Aligned_cols=47  Identities=17%  Similarity=0.226  Sum_probs=36.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      |.+.| +++|.++..      ...++.|.|.++..+      |+|.|+|.|.|..+...+
T Consensus       119 ~~~~W-~k~g~~~~~------~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~s  165 (175)
T 1fnl_A          119 HKVTY-LQNGKDRKY------FHHNSDFHIPKATLK------DSGSYFCRGLVGSKNVSS  165 (175)
T ss_dssp             EEEEE-EETTEEEEE------EEECCCEEESSCCGG------GCEEEEEEEEETTEEEEC
T ss_pred             eEEEE-EECCeEccC------CCCCCEEEEcccChh------hCeEEEEEEEcCCCCccC
Confidence            48999 899988742      234678999999766      999999999998765443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=9.5e-09  Score=55.76  Aligned_cols=47  Identities=11%  Similarity=0.293  Sum_probs=34.5

Q ss_pred             cEEEEEccCCeeeecccc----ceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          2 YVLLWLIRDNTVIAYVKD----LRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~----~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      |.+.| ++||.++.....    ......++  .|.|.++..+      |+|.|+|.+.|.
T Consensus        37 ~~v~W-~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~   89 (101)
T 2edk_A           37 AQVMW-MKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQE------DRGRYQVITNGG   89 (101)
T ss_dssp             CCCEE-EESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGG------GCSBEEEECSSC
T ss_pred             CEEEE-EECCEECCCCCCcceeEEEEECCCEEEEEECCCChh------hCEEEEEEEcCC
Confidence            67899 899988865432    23333333  5999999766      999999999983

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.71  E-value=9.6e-09  Score=62.00  Aligned_cols=52  Identities=12%  Similarity=0.176  Sum_probs=36.5

Q ss_pred             CcEEEEEccC--CeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRD--NTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~--g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++  +..+..  .......++.|.|.++..+      |+|.|+|.|.|..|....
T Consensus       151 ~~~v~W-~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~~~  204 (214)
T 3jz7_A          151 PLQFEW-QKLSDSQTMPT--PWLAEMTSPVISVKNASSE------YSGTYSCTVQNRVGSDQC  204 (214)
T ss_dssp             SCEEEE-EECSTTCCCCG--GGGGGTTSSEEEECSCCGG------GCEEEEEEEECSSCEEEE
T ss_pred             CCEEEE-EECCCCCccCc--cceeccCCCEEEEecCCHH------HCEEEEEEEEcCCCcEEE
Confidence            378999 663  333321  1112234568999999766      999999999999987764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.69  E-value=9.8e-08  Score=57.96  Aligned_cols=60  Identities=28%  Similarity=0.374  Sum_probs=40.6

Q ss_pred             CcEEEEEccCCeeeeccc-cceEE-e-e--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRIA-L-S--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~~-~-~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~   67 (116)
                      .|.++| +++|.++.... ..++. . .  .+.|.|.++..+      |+|.|+|.|.|..|...+  ..+.+.
T Consensus       137 ~p~v~W-~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          137 DPEITW-FKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES------DQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             CCEEEE-EETTEEC------CCEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEE-EECCccccCcCCCceEEEEecCCeEEEEEcCCCcc------cCEEEEEEEECCCCccccccccEEEE
Confidence            378999 89998886421 11221 1 1  247999999766      999999999999998774  444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.69  E-value=1.3e-07  Score=63.63  Aligned_cols=62  Identities=26%  Similarity=0.478  Sum_probs=43.1

Q ss_pred             CcEEEEEccCCeeeeccc-cceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|+|++.+|..+.... ..++ ...+++|.|.++..+      |+|.|+|.|.|..|...+ ..+.|..
T Consensus       369 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~~~v~~  433 (440)
T 3zyj_A          369 LTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ------DTGMYTCMVSNSVGNTTASATLNVTG  433 (440)
T ss_dssp             TSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCST------TCEEEEEEEECSSCEEEEEEEEEEC-
T ss_pred             CCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChh------hCEEEEEEEEcCCCcEEEEEEEEEec
Confidence            488999444665554321 1233 345678999999766      999999999999998774 5555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.69  E-value=7.3e-08  Score=65.05  Aligned_cols=62  Identities=29%  Similarity=0.528  Sum_probs=43.0

Q ss_pred             CcEEEEEccCCeeeeccc-cceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|+|++.+|..+.... ..++ ...+++|.|.++..+      |+|.|+|.|.|..|.... ..+.|..
T Consensus       379 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~v~~  443 (452)
T 3zyi_A          379 MSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS------DTGVYTCMVTNVAGNSNASAYLNVST  443 (452)
T ss_dssp             TSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTT------CCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             CCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHH------HCEEEEEEEEcCCCcEEEEEEEEEEc
Confidence            489999544666654321 2233 345678999999766      999999999999998774 5555543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.68  E-value=7.2e-08  Score=52.46  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             cEEEEEccCCe-eeecc-----ccceEEe-----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          2 YVLLWLIRDNT-VIAYV-----KDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         2 p~v~W~~~~g~-~~~~~-----~~~~~~~-----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      |.|.| ++++. .+...     ...++..     .+..|.|.++..+      |+|.|+|.+.| .|.... ..|.|.
T Consensus        36 ~~v~W-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           36 TSLQW-SNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS------DEGQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             CCEEE-ECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGG------GCEEEEEEECS-SSCEEEEEEEEEE
T ss_pred             cEEEE-EcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChh------HCeEEEEEEEc-CCCcEEEEEEEEE
Confidence            67999 66654 33211     1113322     2347999999766      99999999999 665553 445444

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.68  E-value=1.7e-07  Score=57.16  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC---------ce-E--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG---------VI-L--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE   95 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g---------~~-~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g   95 (116)
                      .|.|.++..+      |+|.|.|.+.+..+         .. .  ...|.|...          ......|  ...+.. 
T Consensus        72 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~----------~~~~~~P--~v~~~~-  132 (207)
T 1ypz_E           72 TLHIRDAQLE------DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPK----------SQPPAKP--SVFIMK-  132 (207)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECC----------CCCCCCC--EEEEEE-
T ss_pred             EEEECCCCHH------HCEEEEEEEecCCcccccccccceeeecCccEEEEccC----------CCCCCCC--eEEEeC-
Confidence            6999999766      99999999988642         11 1  134444431          0000011  111221 


Q ss_pred             CcEEEEeeecCc-CC-ceeEEe
Q psy11568         96 SGGRLDCAAQGS-PT-PKIEWL  115 (116)
Q Consensus        96 ~~~~l~C~~~g~-P~-p~i~W~  115 (116)
                      ..+.|.|.+.|. |. |.++|+
T Consensus       133 ~~~~l~C~~~g~~P~~~~v~W~  154 (207)
T 1ypz_E          133 NGTNVACLVKDFYPKEVTISLR  154 (207)
T ss_dssp             ETTEEEEEEEEESSSCCEEEEE
T ss_pred             CCCeEEEEEeeEeCCCeEEEEe
Confidence            237999999885 44 799997

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=2.5e-08  Score=55.39  Aligned_cols=57  Identities=18%  Similarity=0.096  Sum_probs=37.6

Q ss_pred             cEEEEEccCCeeeeccccceEEee-C--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS-N--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAG   69 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~-~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~   69 (116)
                      |.|+| ++||.++....+...... +  ..|.|.++..+      |+|.|+|.+    |... +..|.|...
T Consensus        43 p~v~W-~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~----g~~~~~~~L~V~~~  103 (115)
T 2cr6_A           43 EPVHW-FLDKTPLHANELNEIDAQPGGYHVLTLRQLALK------DSGTIYFEA----GDQRASAALRVTEK  103 (115)
T ss_dssp             CSCEE-EESSCEECCSSSCCBCCBTTTBCCBEECSCCTT------TCEEEEEEE----TTEECCEEEEEECC
T ss_pred             CccEE-EECCEECCCCCcEEEEEcCCCEEEEEEcCCChh------hCEEEEEEE----CCeeEEEEEEEECC
Confidence            68999 899988865333222212 2  27999999766      999999994    3333 255556543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.67  E-value=1e-07  Score=57.92  Aligned_cols=54  Identities=15%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      |.++| ++||..+..      ...++.|.|.++..+      |+|.|+|.|.|..+...+  ..|.|..
T Consensus       119 ~~v~W-~k~g~~~~~------~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          119 HKVTY-LQNGKGRKY------FHHNSDFYIPKATLK------DSGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             EEEEE-EETTEEEEE------EEECCCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ceEEE-EECCcEeec------ccCCceEEECcCCcc------cCEEEEEEEEeCCCceecCcEEEEEeC
Confidence            67999 899987642      224668999999766      999999999996544443  4555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=6.6e-08  Score=63.08  Aligned_cols=54  Identities=17%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEe---------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL---------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~---------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|..+..........         .++.|.|.++..+      |+|.|+|.|.|..|....
T Consensus       275 ~p~i~W-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~G~~~~  337 (347)
T 2ifg_A          275 APSLRW-LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV------NNGNYTLLAANPFGQASA  337 (347)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGG------GCEEEEEEEEETTEEEEE
T ss_pred             CCcEEE-EeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcc------cCceEEEEEecCCCceee
Confidence            478999 89999887432222211         1346999999766      999999999999987664

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.66  E-value=3.8e-08  Score=61.30  Aligned_cols=60  Identities=17%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             CCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcC-----CceeEEe
Q psy11568         42 DVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSP-----TPKIEWL  115 (116)
Q Consensus        42 ~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P-----~p~i~W~  115 (116)
                      ..|+|.|+|.|.   |.... ..+.+..          .+.+...+ ....+.+|+++.|.|.+.+.|     .|.++|+
T Consensus        13 ~~dsg~Y~C~a~---g~~~~~~~~~~~~----------~~~~~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~   78 (254)
T 2c1o_A           13 PGTSVKLSCKAS---GYSFTNYWMNWLR----------ELVMTQSP-LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWL   78 (254)
T ss_dssp             --------------------------------------CCCEEEEC-SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEE
T ss_pred             CCccEEEEEcCc---hhhhhhhhhheee----------ceeEEeCC-ceEEecCCCcEEEEeeccCcccccCCCCceEEE
Confidence            449999999998   33332 1111111          15555555 788999999999999999998     4899997

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.65  E-value=5.3e-09  Score=55.11  Aligned_cols=39  Identities=18%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCC-CCCCCCCCCCceEEEEEEEc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPF-PETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v-~~~~~~~~~d~G~y~C~a~n   54 (116)
                      |.|+| ++||.++...       .++.|.|.++ ..+      |+|.|+|.|.+
T Consensus        27 P~i~W-~kdg~~l~~~-------~~~~L~I~~v~~~~------DsG~Y~C~A~t   66 (82)
T 3r08_E           27 ENLKW-EKNGQELPQK-------HDKHLVLQDFSEVE------DSGYYVCYTPA   66 (82)
T ss_dssp             SSCEE-EETTEECTTC-------CSSCCBCCSCCTTT------TCSCEEEECSS
T ss_pred             CcEEE-EECCEECcCC-------CCCEEEECccCccC------cCEEEEEEEcc
Confidence            45899 9999987531       4568999996 445      99999999986

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.64  E-value=5.5e-07  Score=59.07  Aligned_cols=54  Identities=22%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             CcEEEEEccCCeeeeccc--cceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK--DLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~--~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|..+....  +.+....  ...|.|.++..+      |+|.|+|.|.|..|...+
T Consensus       129 ~~~i~W-~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~  186 (389)
T 2jll_A          129 PASIHW-RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN------DFGRYNCTATNHIGTRFQ  186 (389)
T ss_dssp             CCEEEE-EETTEESSCTTCTTEEEEECSSCEEEEECCCSTT------SSEEEEEEEEETTEEEEE
T ss_pred             CCeEEE-EECCccCCcccCceEEEeccCCEEEEEECCCChh------hCEEEEEEEEcCCCcEEE
Confidence            378999 99999886533  2222222  226999999766      999999999999988664

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.64  E-value=7.4e-08  Score=56.42  Aligned_cols=47  Identities=13%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      |.+.| +++|..+..      ...++.|.|.++..+      |+|.|+|.+.|..|...+
T Consensus       116 ~~~~W-~~~g~~~~~------~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s  162 (170)
T 3ry4_A          116 VKVTF-FQNGKSQKF------SHLDPTFSIPQANHS------HSGDYHCTGNIGYTLFSS  162 (170)
T ss_dssp             EEEEE-EETTEEEEE------ESSCCEEEESSCCGG------GCEEEEEEEEETTEEEEC
T ss_pred             ceEEE-EECCeEccc------cCCCCeEEEEecccc------CCEEEEEEEEeCcCcccc
Confidence            68999 889887652      123558999999766      999999999999986544

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.62  E-value=2.6e-08  Score=62.37  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=52.9

Q ss_pred             EEEEEccCCeeeeccccce-EEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCce-EEEEEEEEeCcEeee
Q psy11568          3 VLLWLIRDNTVIAYVKDLR-IALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAGSVVSL   74 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~-~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~~~~~~v~~~~~~~~   74 (116)
                      .|+| ++||+++....... ....++      .|.|.....      .|.|.|+|.+.+..+.. ....+.+..     .
T Consensus        59 ~v~W-~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~------~d~~~YtC~v~h~~~~~~~~~~i~~~~-----~  126 (240)
T 4acp_A           59 KFNW-YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW------LNGKEYKCKVSNKALPAPIEKTISKAK-----G  126 (240)
T ss_dssp             EEEE-EETTEEECCCEECCCEEC---CEEEEEEEECCHHHH------HHTCCEEEEEECC----CEEEEECCCC-----S
T ss_pred             EEEE-EECCcccCCceeccceECCCCeEEEEEEEEEechhc------cCCCEEEEEEEcCCCCccccccccccC-----C
Confidence            6999 89999875321100 111122      355544432      26899999999987532 222221100     0


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEEEEeeecC-cCCc-eeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG-SPTP-KIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~  115 (116)
                      ... .|.+...++... ...|+.+.|.|.+.| .|.+ .++|+
T Consensus       127 ~~~-~P~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~  167 (240)
T 4acp_A          127 QPR-EPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWE  167 (240)
T ss_dssp             CCB-CCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCC-CCEEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEE
Confidence            011 255554442221 134889999999999 4654 78996

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.62  E-value=1.1e-07  Score=59.41  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=28.9

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRL  100 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  100 (116)
                      ++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|...         .|.+...| ....+..|+.+..
T Consensus       200 ~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~~~---------~p~~~~~p-~~~~~~~~q~~~~  259 (268)
T 3mj6_A          200 DGSIKLQTVKES------DQGIYTCSIYVGKLESRKTIVLHVVQD---------EFQRTISP-TPPTDKGQQGILN  259 (268)
T ss_dssp             BCCEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECC-------------------------------
T ss_pred             eEEEEECcCChh------hCeEEEEEEEcCCceEEEEEEEEEEcC---------CCeeeeCC-CCCCCCcceeccc
Confidence            457999999766      999999999998876653 55555432         15554554 5555555555443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.62  E-value=1.2e-07  Score=58.49  Aligned_cols=75  Identities=13%  Similarity=0.217  Sum_probs=42.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc-------eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV-------IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-------~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.       ..  ...+.|...     ... .|.+...+ ....+..|+.+
T Consensus        84 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~-----~~~-~P~v~~~~-~~~~~~~g~~v  150 (232)
T 3qhz_H           84 VLTMTNMDPV------DTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSA-----STK-GPSVFPLA-PSSKSTSGGTA  150 (232)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECCC---CCCCCCEECCCEEEEECSS-----CCB-CCEEEEEC-C-------CEE
T ss_pred             EEEECcCChh------hCEEEEEEEeeccCccccccceeeCCCeEEEEecC-----CCC-CCEEEEec-ccccccCCCcE
Confidence            5999999766      999999999976311       11  133444311     011 25554333 22345569999


Q ss_pred             EEEeeecCcCCc--eeEEe
Q psy11568         99 RLDCAAQGSPTP--KIEWL  115 (116)
Q Consensus        99 ~l~C~~~g~P~p--~i~W~  115 (116)
                      .|.|.+.+.+++  .++|+
T Consensus       151 ~L~C~~~~~~P~~~~v~W~  169 (232)
T 3qhz_H          151 ALGCLVKDYFPEPVTVSWN  169 (232)
T ss_dssp             EEEEEEEEEBSSCCEEEEG
T ss_pred             EEEEEEeeEeCCCeEEEEE
Confidence            999999986543  46696

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.61  E-value=9.8e-09  Score=66.07  Aligned_cols=102  Identities=12%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccC--C
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQ--G   79 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~--~   79 (116)
                      .|+| +++++++....... ......+.+...+      ..|.+.|+|.|.|..+... ...-.+..+..+.++-.+  .
T Consensus       120 ~itW-~kg~~~l~~~~~~~-~~~~~~l~~~~~~------~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~  191 (291)
T 1mq8_A          120 TVVL-LRGEKELKREPAVG-EPAEVTTTVLVRR------DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP  191 (291)
T ss_dssp             EEEE-ESSSSEEEEEECCB-TTEEEEEECCCSS------SCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------
T ss_pred             EEEE-EECCEEeecccCCC-CCceEEEEeeeee------ccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCC
Confidence            6899 89998876321000 0011134443332      2366799999999755210 000001111112221110  0


Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCc---eeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTP---KIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p---~i~W~~  116 (116)
                      +.+ ..+   ..+.+|+.+.|.|.+.|.|++   .++|++
T Consensus       192 ~~~-~~p---~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~  227 (291)
T 1mq8_A          192 PQL-VSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLAL  227 (291)
T ss_dssp             ----------------------------------------
T ss_pred             cee-cCC---cCccCCCeEEEEEEcCCCCCCcccEEEEEE
Confidence            111 112   256789999999999998654   478863

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.61  E-value=6.4e-08  Score=58.32  Aligned_cols=52  Identities=23%  Similarity=0.453  Sum_probs=37.9

Q ss_pred             CcEEEEEccCCe-eeecccc-------ceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          1 MYVLLWLIRDNT-VIAYVKD-------LRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         1 ~p~v~W~~~~g~-~~~~~~~-------~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.++| +++|. ++.....       .++..  .++.|.|.++..+      |+|.|+|.|.|..|..
T Consensus       134 ~~~i~W-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          134 PSEYSW-FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF------DSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             CCEEEE-EETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGG------GCEEEEEEEECSSSCC
T ss_pred             CCEEEE-EeCCcccccccccccccccCceeEecCCCceEEEEecChh------hCcEEEEEEccccCCc
Confidence            378999 88888 7754221       12222  3558999999766      9999999999999987

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.61  E-value=1.4e-07  Score=57.52  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             cEEEEEccCCeeeecccc-c-eE--------EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKD-L-RI--------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~-~-~~--------~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      +.+.| +++|..+..... . +.        ....+.|.|.++..+      |+|.|+|.|.|..|.... ..|.|..
T Consensus       137 ~~i~W-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          137 IDFNW-EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS------DQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             CEEEE-ECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             eEEEE-EecCCccceEEEeccccccccCccceeeeEEEEECCCCcc------cCEEEEEEEecCCCcEEEEEEEEEec
Confidence            47999 888776432111 0 00        111236999999766      999999999999987763 5555544

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.2e-07  Score=51.40  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=37.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~   68 (116)
                      |.|+| ++++..+....+......++  .|.|.++..+      |+|.|+|.    .|... ...|.|..
T Consensus        37 ~~v~W-~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~----~g~~~~~~~l~V~~   95 (103)
T 2dku_A           37 ATVTW-RKGLLELRASGKHQPSQEGLTLRLTISALEKA------DSDTYTCD----IGQAQSRAQLLVQG   95 (103)
T ss_dssp             SCCEE-EESSCBCCSSSSEEEEEETTEEEEEEESCCTT------TCSEEEEE----CSSCBCCEEEEEEC
T ss_pred             CeEEE-EeCCEECCCCCeEEEEeCCCEEEEEECCCCcc------cCEEEEEE----eCCceEEEEEEEeC
Confidence            67899 89998876433333232233  7999999766      99999998    33333 24455543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.60  E-value=2.1e-07  Score=52.29  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=27.7

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .+|.|.++..+      |+|.|.|.+.|. |.... ..|.|..
T Consensus        66 ~~L~I~~v~~~------DsG~Y~C~a~n~-g~~~~~~~l~V~~  101 (124)
T 3rbg_A           66 LSITVPNVTLQ------DEGVYKCLHYSD-SVSTKEVKVIVLA  101 (124)
T ss_dssp             EEEEESSCCGG------GCEEEEEEEESS-SEEEEEEEEEEEC
T ss_pred             EEEEECCCChH------HCEEEEEEEEcC-CCCcEEEEEEEEe
Confidence            47999999766      999999999999 66553 5566654

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=98.60  E-value=1.9e-07  Score=62.41  Aligned_cols=74  Identities=16%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCC-cEEEEee
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNES-GGRLDCA  103 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~-~~~l~C~  103 (116)
                      +.+|.|.++..+      |+|.|.|.+.+..+.... ..+.|..+          |.+...+.....+..|+ .+.|.|.
T Consensus       253 ~~sL~I~~v~~~------D~G~Y~C~v~~~~~~~~~~v~L~V~~p----------P~V~v~p~~~~~~~~G~~~vtL~C~  316 (401)
T 3f8u_B          253 NGTFWLPRVQPF------QEGTYLATIHLPYLQGQVTLELAVYKP----------PKVSLMPATLARAAPGEAPPELLCL  316 (401)
T ss_dssp             EEEEEETTCCGG------GCEEEEEEEEETTEEEEEEEEEEEEBC----------CEEEEESSSCCCCCTTCCCCCEEEE
T ss_pred             cEEEEECcCCHh------hCceEEEEEEecccceeEEEEEeeccC----------CeEeeccCcceeecCCCccEEEEEE
Confidence            347999999766      999999999998765443 44555443          55544432211134576 7999999


Q ss_pred             ecCc-CC--ceeEEe
Q psy11568        104 AQGS-PT--PKIEWL  115 (116)
Q Consensus       104 ~~g~-P~--p~i~W~  115 (116)
                      +.|. |.  +.++|+
T Consensus       317 a~GfyP~~~~~VtW~  331 (401)
T 3f8u_B          317 VSHFYPSGGLEVEWE  331 (401)
T ss_dssp             EEEEBSSTTCEEEEE
T ss_pred             ecCCcCCCCcEEEEE
Confidence            9996 55  789994

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.59  E-value=2.3e-07  Score=55.04  Aligned_cols=53  Identities=9%  Similarity=-0.034  Sum_probs=39.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.++| +++|..+        ...++.|.|.++..+      |+|.|+|.|.|..+.... ..|.|..
T Consensus       126 ~~~v~W-~~~~~~~--------~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          126 SPSVQC-RSPRGKN--------IQGGKTLSVSQLELQ------DSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             CCEEEE-ECTTSCE--------EEESSEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEE-EeCCCcc--------ccCceEEEEecCCcC------CCeEEEEEEEECCceEEEEEEEEEEe
Confidence            478999 7776544        235678999999766      999999999998876663 5555543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.59  E-value=1.9e-07  Score=55.15  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~~   68 (116)
                      |.+.| +++|..+...      ..++.|.|.++..+      |+|.|+|.|.|..+...+  ..|.|..
T Consensus       116 ~~~~W-~~~g~~~~~~------~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          116 YKVIY-YKDGEALKYW------YENHNISITNATVE------DSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             EEEEE-EETTEECCSC------CCSSEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEE-EECCEEEeee------cCCCeEEECCCCcc------cCEEEEEEEEeCCcceEecCEEEEEec
Confidence            58999 8899877421      13568999999766      999999999998554443  4444443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.59  E-value=5.9e-08  Score=58.42  Aligned_cols=53  Identities=9%  Similarity=0.104  Sum_probs=36.6

Q ss_pred             CcEEEEEccCCeeeeccccce---EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~---~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +|.|+| ++++..+.......   .....+.|.|.++..+      |+|.|+|.|.|..|...
T Consensus       147 ~p~i~W-~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~YtC~a~N~~g~~~  202 (218)
T 4frw_A          147 APSVTW-DTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSM------NGQPLTCVVSHPGLLQD  202 (218)
T ss_dssp             CCEEEE-EESSCCEEEEEEEECSSSEEEEEEEEECCCGGG------TTCEEEEEEECTTCSSC
T ss_pred             CceEEE-EECCcccccCceEecCCcEEEEEEEEEeeCCHH------hCeEEEEEEEeCCCCeE
Confidence            478999 88887775321110   0111236889988766      99999999999988665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.59  E-value=2.5e-08  Score=62.95  Aligned_cols=95  Identities=18%  Similarity=0.089  Sum_probs=34.9

Q ss_pred             cEEEEEccCCeeeeccccceEEe---eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC----ceEE--EEEEEEeCcEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG----VILS--RFVHVKAGSVV   72 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~---~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g----~~~~--~~~~v~~~~~~   72 (116)
                      +.+.| +++|+.+..........   .++.|.|.+++        |+|.|+|.|.+...    ...+  ..|.|...   
T Consensus       135 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--------D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~---  202 (257)
T 1b6u_A          135 DMYHL-SREGEAHERRFSAGPKVNGTFQADFPLGPAT--------HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN---  202 (257)
T ss_dssp             SEEEE-EETTSSCEECCBCBCCSSSCCBEEEEEEECC--------SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC---
T ss_pred             cEEEE-EECCcccCcccccccccCCceeEEEEecccc--------cCEEEEEEEEcCCCCcccccCCCCEEEEEecc---
Confidence            57899 88887765321111111   13478999883        89999999997632    1222  33333332   


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                             |.+...++.......|..+.|.|.+ |.+.+.|.|.+
T Consensus       203 -------p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~  238 (257)
T 1b6u_A          203 -------PSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLN  238 (257)
T ss_dssp             -------C------------------------------------
T ss_pred             -------CCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhh
Confidence                   3333222233344568899999866 77888888864

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.58  E-value=3.2e-08  Score=56.48  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=25.0

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      ++.|.|.++..+      |+|.|+|.|.|..|...
T Consensus        89 ~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           89 ASTISIDTLVEE------DTGTYECRASNDPDRNH  117 (137)
T ss_dssp             EEEEEECSCCGG------GCEEEEEEEECCTTSSS
T ss_pred             ceEEEECCCCcc------cCEEEEEEEEecCCccc
Confidence            347999999766      99999999999998764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.58  E-value=1e-07  Score=58.94  Aligned_cols=52  Identities=13%  Similarity=0.186  Sum_probs=36.7

Q ss_pred             CcEEEEEccCCeeeecccc----------------------ceEEe-eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKD----------------------LRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~----------------------~~~~~-~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|+| ++++.++.....                      .+... ..+.|.|.++..+      |+|.|+|.|.|..|
T Consensus       165 ~p~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          165 NANVTW-YTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT------DAGRVWCELATGQG  237 (250)
T ss_dssp             TCEEEE-EEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG------GCEEEEEEEESSSS
T ss_pred             CCeeEE-EeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc------cCEEEEEEecCCcc
Confidence            378999 888876643110                      11122 3468999999766      99999999999776


Q ss_pred             ce
Q psy11568         58 VI   59 (116)
Q Consensus        58 ~~   59 (116)
                      ..
T Consensus       238 ~~  239 (250)
T 2fbo_J          238 EL  239 (250)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.56  E-value=3.4e-07  Score=54.21  Aligned_cols=58  Identities=19%  Similarity=0.360  Sum_probs=38.1

Q ss_pred             cEEEEEcc----CCeeeeccccceE--EeeCC--eEEecCCC-CCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          2 YVLLWLIR----DNTVIAYVKDLRI--ALSNG--SLMFPPFP-ETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         2 p~v~W~~~----~g~~~~~~~~~~~--~~~~~--~l~i~~v~-~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      |.+.| ++    ++..+......++  ...++  .|.|.++. .+      |+|.|+|.|.|..|...+ ..|.|
T Consensus       114 ~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~------d~G~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          114 TDWAW-YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA------DPGQYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             CEEEE-EECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTT------SSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CeEEE-EEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccc------cCceEEEEEEeCCCcceEEEEEEE
Confidence            78999 66    4444432222222  22222  79999996 56      999999999999987764 44443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.56  E-value=9.2e-08  Score=58.64  Aligned_cols=60  Identities=10%  Similarity=0.021  Sum_probs=31.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCe---EEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGS---LMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+|++.+|..+...........++.   +.+.+++.+      |+|.|+|.|.|..|.... ..|.|
T Consensus       148 ~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~------d~G~YtC~a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          148 QPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS------SGEGVSCTIRSSLLGLEKTASISI  211 (226)
T ss_dssp             CCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----------CEEEEEEETTTTEEEEEEECC
T ss_pred             CCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechh------cCcEEEEEEEeCCCCeEEEEEEEE
Confidence            4899994345555543222112223332   334455444      999999999999987764 44444

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.54  E-value=4.3e-07  Score=50.39  Aligned_cols=30  Identities=17%  Similarity=0.209  Sum_probs=25.7

Q ss_pred             EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      ...+++|.|.+++.+      |+|.|+|.+.+..+.
T Consensus        68 ~~~ngSL~I~nvt~~------D~G~Ytc~v~~~~~~   97 (111)
T 2qsq_A           68 IYPNASLLIQNIIQN------DAGFYTLHVIKSDLV   97 (111)
T ss_dssp             ECTTSCEEECSCCGG------GCEEEEEEEEETTSC
T ss_pred             EecCCcEEEccCccc------CCeEEEEEEEeCCCc
Confidence            456789999999766      999999999998664

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.7e-07  Score=51.32  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=38.4

Q ss_pred             CcEEEEEccCCeeeeccc-cc-------eEEee-CC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DL-------RIALS-NG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~-------~~~~~-~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~   68 (116)
                      .|.++| ++||+++.... ..       ++... ++   .|.|.++..+      |+|.|+|..-+..  ..+..|.|..
T Consensus        35 ~p~v~W-~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~------D~G~Y~~~~~~~~--~ssA~L~V~~  105 (112)
T 2e6q_A           35 IIQGTW-FLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ------DSGALVGFSCPGV--QDSAALTIQE  105 (112)
T ss_dssp             CCCCEE-EESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCST------TCSEEEEEEETTE--EEEEEEEEEC
T ss_pred             CCeEEE-EECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHH------HCccEEEEEECCe--eEEEEEEEeC
Confidence            378999 99999997543 01       44443 33   6999999766      9999977433322  2245566654

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.54  E-value=5.6e-07  Score=61.73  Aligned_cols=98  Identities=16%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             EEEEEccCCeeeecc-ccceEE-eeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeee
Q psy11568          3 VLLWLIRDNTVIAYV-KDLRIA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSL   74 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~-~~~~~~-~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~   74 (116)
                      .|+| +++|+.+... ...... ..++      .|.|.....+      |.|.|+|.+.|..+......+......  . 
T Consensus       330 ~i~W-~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~------d~g~y~C~a~n~~~~~~~~~~~~~~~~--~-  399 (512)
T 1zvo_C          330 HLTW-EVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWN------AGTSVTCTLNHPSLPPQRLMALREPAA--Q-  399 (512)
T ss_pred             EEEE-EECCEeccCceeccceecCCCCeEEEEEEEEEchHHhc------CCCeEEEEEEeCCCCCCceeEEeecCC--C-
Confidence            8999 8998876521 110111 1122      4777777544      899999999998764322111111100  0 


Q ss_pred             eccCCCceEecCCCeEEEeCCCcEE-EEeeecCcCCc--eeEEe
Q psy11568         75 LDIQGPLFRIEPPYRFEFSNESGGR-LDCAAQGSPTP--KIEWL  115 (116)
Q Consensus        75 ~~~~~p~~~~~~~~~~~~~~g~~~~-l~C~~~g~P~p--~i~W~  115 (116)
                      ...+ |.+...++..    .|+.+. |.|.+.|.+++  .++|+
T Consensus       400 ~~~~-p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~  438 (512)
T 1zvo_C          400 APVK-LSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWL  438 (512)
T ss_pred             CCCC-CEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEE
Confidence            0011 5444433222    688899 99999996544  57896

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.53  E-value=2.3e-07  Score=55.79  Aligned_cols=50  Identities=10%  Similarity=0.048  Sum_probs=30.4

Q ss_pred             CcEEEEEccCCeeeeccccc-eEEee---CCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          1 MYVLLWLIRDNTVIAYVKDL-RIALS---NGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~-~~~~~---~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.++| +++|..+...... .....   .+.|.|.++..+      |+|.|+|.|.|..+
T Consensus       128 ~~~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          128 FDGFIL-CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPS------RRWWYRCYAYDSNS  181 (198)
T ss_dssp             CSEEEE-EEC------CEEEC------CCEEEEEECCCCTT------SCEEEEEEEECTTS
T ss_pred             CcEEEE-EECCCccCCccccccccCCCcceeEEEecccCcc------cCeEEEEEEEeCCC
Confidence            378999 8888876421111 11111   257999999766      99999999999875

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.50  E-value=2.5e-07  Score=56.44  Aligned_cols=47  Identities=17%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|..+...       ..+.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus       147 ~~~v~W-~~~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s  193 (218)
T 3k0w_A          147 IPHYQW-FKNELPLTHE-------TKKLYMVPYVDLE------HQGTYWCHVYNDRDSQDS  193 (218)
T ss_dssp             CCEEEE-EETTEECTTC-------CSSEEEESSCCGG------GCEEEEEEEECSSCEEEC
T ss_pred             CCeEEE-EECCEECCCC-------CCCEEEEeecChh------cCEEEEEEEEcCCCCcee
Confidence            378999 8898877532       2347999999766      999999999999887665

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.50  E-value=7.9e-08  Score=57.17  Aligned_cols=45  Identities=9%  Similarity=0.058  Sum_probs=33.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| +++|+++....         .+.|.++..+      |+|.|+|.|.|..|...+
T Consensus       124 ~p~i~W-~~~g~~l~~~~---------~~~i~~~~~~------d~G~Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          124 DVELKL-YQGKEHLRSLR---------QKTMSYQWTN------LRAPFKCKAVNRVSQESE  168 (176)
T ss_dssp             SCEEEE-EETTEEEEEES---------SSEEEEECSC------CSSCEEEEEEETTEEEEE
T ss_pred             CcEEEE-EECCEECCCCC---------cEEEEEEEcc------CCeEEEEEEEecCCCcee
Confidence            378999 88998876322         1334456444      999999999999987765

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.49  E-value=1.6e-07  Score=50.84  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             EEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      |.| ++++..+...........+.  .|.|.++..+      |+|.|+|.+
T Consensus        39 v~W-~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~   82 (103)
T 2e7b_A           39 VKW-CYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ------DSGRYSCSF   82 (103)
T ss_dssp             CEE-EESSSBCCCSSSEEEEECSSEEEEEECSCCTT------TCCCEEEEC
T ss_pred             eEE-EECCEECCCCCcEEEEEcCCEEEEEEccCCcc------cCEEEEEEE
Confidence            899 88888876433322222222  4999999766      999999983

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.49  E-value=2.5e-07  Score=57.42  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=44.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc-----------eE---EEEEEEEeCcEeeeeccCCCceEecCCCeEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV-----------IL---SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFS   93 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-----------~~---~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~   93 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.           ..   ...+.|...     ... .|.+...+ ....+.
T Consensus        87 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~-----~~~-~P~v~~~~-~~~~~~  153 (239)
T 3tv3_H           87 FLKLNSVTAA------DTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSA-----STK-GPSVFPLA-PSSKST  153 (239)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCC-----CCB-CCEEEEEC-CCCCC-
T ss_pred             EEEECCCChh------hCEEEEEEEecCccccccccccccceeeeCCCcEEeeccC-----CCc-CCEEEEEC-CChhhc
Confidence            4999999766      999999999875320           01   122333210     011 25555333 222334


Q ss_pred             CCCcEEEEeeecCc-CCc-eeEEe
Q psy11568         94 NESGGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        94 ~g~~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      .|+.+.|.|.+.+. |.+ .++|+
T Consensus       154 ~g~~v~l~C~~~~~~p~~~~v~W~  177 (239)
T 3tv3_H          154 SGGTAALGCLVKDYFPEPVTVSWN  177 (239)
T ss_dssp             -TTEEEEEEEEEEEBSSCCEEEEG
T ss_pred             cCCcEEEEEEEeeEeCCCeEEEEE
Confidence            69999999999984 544 37796

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.48  E-value=1.9e-07  Score=55.86  Aligned_cols=53  Identities=28%  Similarity=0.445  Sum_probs=38.8

Q ss_pred             c-EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHV   66 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v   66 (116)
                      | .++| +++|..+......   ..++.|.|.++.        |+|.|+|.|.|..|...+  ..|.|
T Consensus       136 p~~v~W-~~~~~~~~~~~~~---~~~~~L~i~~~~--------d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          136 PVDLLW-LQDAVPLATAPGH---GPQRSLHVPGLN--------KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CCEEEE-EESSCBSSSSTTS---SCCEEEEECCCS--------SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEEEE-EECCEeccCCCCc---CCCCeEEEcccc--------cCceEEEEEEcCCCceEEEEEEEEE
Confidence            5 8999 8898887643221   345579999884        799999999999987753  44444

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.48  E-value=3.1e-07  Score=56.49  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=40.3

Q ss_pred             CcEEEEEcc----CCeeeeccccceEE----------eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIR----DNTVIAYVKDLRIA----------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~----~g~~~~~~~~~~~~----------~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.+.| ++    +|..+.........          ..++.|.|.++..+      |+|.|+|.|.|..|.... ..|.
T Consensus       143 ~p~v~W-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~~~~~~l~  215 (241)
T 3grw_A          143 QPHIQW-LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSER------DGGEYLCRATNFIGVAEKAFWLS  215 (241)
T ss_dssp             CCEEEE-EEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCEEEE-EEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcc------cCcEEEEEEecCcceEEEEEEEE
Confidence            368999 66    77776532211110          12336999999766      999999999999987764 5555


Q ss_pred             EEe
Q psy11568         66 VKA   68 (116)
Q Consensus        66 v~~   68 (116)
                      |..
T Consensus       216 V~~  218 (241)
T 3grw_A          216 VHG  218 (241)
T ss_dssp             C--
T ss_pred             ecC
Confidence            544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.48  E-value=4e-07  Score=64.73  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPL   81 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~   81 (116)
                      |.|.| .++|..+...       ..+.+.|..+...     ...+.|.|.+.+..|......+.+...     .....|.
T Consensus       106 p~i~W-~k~g~~~~~~-------~~~~~~i~~~~~~-----~~~l~~~~va~~~~G~~~~~~v~~~~~-----~~~~~p~  167 (731)
T 2v5y_A          106 GNPIW-NISGDPTRTW-------NRAELAISTFWPN-----FYQVIFEVITSGHQGYLAIDEVKVLGH-----PCTRTPH  167 (731)
T ss_dssp             CSEEE-EECCCCCSSC-------EEEEEEECCCTTS-----CEEEEEEEEECSSCCEEEECCBEEESS-----CCSSSCE
T ss_pred             cceeE-EEeCCcCCce-------eEEEEEEeecCCC-----ceEEEEEEEecCCceEEEEeeEEeeec-----ccccccc
Confidence            67899 8887665321       1123445544111     145899999988888665432222221     0111255


Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCcCCceeE-Ee
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIE-WL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~-W~  115 (116)
                      +. .+ .+..+..|+++.|.|.+.|.|.|.+. |+
T Consensus       168 ~~-~~-~~~~v~~G~~v~l~C~~~g~P~p~i~~W~  200 (731)
T 2v5y_A          168 FL-RI-QNVEVNAGQFATFQCSAIGRTVAGDRLWL  200 (731)
T ss_dssp             EC-CC-CCEEEETTSCEEEEEEEESCCCTTCEEEE
T ss_pred             cc-cc-cceEEeCCCcEEEEEEeCCCCCCceeEEE
Confidence            54 44 67889999999999999999999998 75

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.47  E-value=1.1e-06  Score=48.46  Aligned_cols=55  Identities=18%  Similarity=0.255  Sum_probs=36.0

Q ss_pred             CcEEEEEccCC---eeeeccccce--EEeeCC----eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDN---TVIAYVKDLR--IALSNG----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g---~~~~~~~~~~--~~~~~~----~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+|.+.+|   .++......+  ....++    .|.|.+|...      |+|.|+|.|.+..|...+
T Consensus        44 rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~s------DsG~YrCsAn~~~g~ieS  107 (122)
T 1xau_A           44 RPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLS------DNGSYSCSTNFNSQVINS  107 (122)
T ss_dssp             CCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGG------GCEEEEEEEEETTEEEEC
T ss_pred             CCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEc------CCccEEEEeeCCCCceee
Confidence            48999955555   3332211111  111222    6888999655      999999999999988875

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.47  E-value=5.5e-08  Score=58.47  Aligned_cols=53  Identities=25%  Similarity=0.494  Sum_probs=39.1

Q ss_pred             CcEEEEEccCCeeeecccc-------ceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKD-------LRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~-------~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.+.| +++|..+.....       .++..  .++.|.|.++..+      |+|.|+|.|.|..|...
T Consensus       137 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~  198 (209)
T 1nbq_A          137 PSEYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS------DTGEYSCEARNGYGTPM  198 (209)
T ss_dssp             CCEEEE-EETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGG------GCCCEEEEEECSSSCCE
T ss_pred             CceeEE-EECCeeCCCccccceeeeccceEEcCCcceEEEEecccc------CCeEEEEEEeCCcCccc
Confidence            378999 888888764221       11111  3458999999766      99999999999998873

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.45  E-value=7.7e-06  Score=52.22  Aligned_cols=91  Identities=13%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeCcEeeeeccCCCc
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAGSVVSLLDIQGPL   81 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~~~~~~~~~~~p~   81 (116)
                      ++.| ++||.++..        ..+.|.+..+...      |+|.|+|.+.+..|.... ..+.|...        ..+.
T Consensus        37 TYqW-yKDG~~IsG--------aT~tLti~s~t~s------dSG~YqCvVTDa~Gcs~tSs~VtVT~~--------a~l~   93 (304)
T 3shs_A           37 TYTW-TKDDQPHEN--------NTATLTVADATSE------NAGSYKVTVQDTDTMTSVESEVFLMEE--------AELI   93 (304)
T ss_dssp             EEEE-EETTEECSC--------CSSEEEESSCCGG------GCEEEEEEEEETTTCCEEECCCEEECB--------CCEE
T ss_pred             eEEE-EECCccccC--------CcceEEeeecccc------CCeEEEEEEEECCCCeeeeeeEEEecc--------Ccee
Confidence            6889 899877641        2347788888655      999999999998876553 22333321        0123


Q ss_pred             eEecCCCeEEEeCCCcEEEEeee--cC-cC-----CceeEEeC
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAA--QG-SP-----TPKIEWLI  116 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~--~g-~P-----~p~i~W~~  116 (116)
                      +....+....+..+..+.|.+.+  +| .|     ...+.|+.
T Consensus        94 i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyK  136 (304)
T 3shs_A           94 VNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK  136 (304)
T ss_dssp             EEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEE
T ss_pred             EEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEee
Confidence            33333355666667889998877  43 44     35888973

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.44  E-value=4.7e-07  Score=53.42  Aligned_cols=46  Identities=28%  Similarity=0.379  Sum_probs=35.4

Q ss_pred             c-EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      | .++| +++|..+....     ..+..|.|.++.        |+|.|+|.|.|..|...+
T Consensus       128 p~~v~W-~~~~~~~~~~~-----~~~~~L~i~~~~--------d~G~Y~C~a~N~~g~~~s  174 (182)
T 1rhf_A          128 PVTIVW-WRGTTKIGGPA-----PSPSVLNVTGVT--------QSTMFSCEAHNLKGLASS  174 (182)
T ss_dssp             CCEEEE-EETTEECSCSE-----ESSEEEEECCCS--------SCEEEEEEEEETTEEEEC
T ss_pred             CCEEEE-EcCCeECCCCC-----CCceEEEEeccc--------cCeEEEEEEECCCCCccc
Confidence            5 8999 88988875321     145578888872        899999999999987753

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.44  E-value=1.6e-06  Score=59.52  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCc--eeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTP--KIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~  115 (116)
                      |.+...++....+..|+.+.|.|.+.|.+++  .++|+
T Consensus       297 p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~  334 (512)
T 1zvo_C          297 LGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWE  334 (512)
T ss_pred             CEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEE
Confidence            4443333344446679999999999997443  88996

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.43  E-value=6.5e-07  Score=51.54  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=27.2

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      ..|.|.++..+      |+|.|.|.+.|. |.... ..|.|..
T Consensus       103 ~~L~I~~v~~~------DsG~Y~C~~~n~-~~~~~~~~L~V~~  138 (145)
T 1z9m_A          103 LSISISNVALA------DEGEYTCSIFTM-PVRTAKSLVTVLG  138 (145)
T ss_dssp             EEEEECSCCGG------GCEEEEEEECSS-SCEEEEEEEEEEC
T ss_pred             EEEEECCCChh------hCEEEEEEEEcC-CCceEEEEEEEEe
Confidence            47999999766      999999999999 76553 4555554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.42  E-value=3.4e-08  Score=60.39  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=45.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|.|.+.|..+... ...+.+..      ...+ |.+...++....+..|+.+.|.|.+.|
T Consensus        67 ~L~I~~~~~~------D~g~Y~C~~~~~~~~~~~~~~i~~~~------~~~~-P~v~~~~~~~~~~~~g~~~~L~C~~~g  133 (214)
T 1ow0_A           67 VLPGCAEPWN------HGKTFTCTAAYPESKTPLTATLSKSG------NTFR-PEVHLLPPPSEELALNELVTLTCLARG  133 (214)
T ss_dssp             ECTTTHHHHH------HTCEEEEEECCSSCSSCEEEEEECCS------SCCC-CEEEEECCCTTTTTSSSEEEEEEEEEE
T ss_pred             EEEEeHHHcC------CCCeEEEEEecCCCCCceeEeeccCC------CCCC-CEEEecCCCHHHhccCCceEEEEEEee
Confidence            4666666444      89999999999876432 22221100      0112 555433322223456888999999999


Q ss_pred             c-CC-ceeEEe
Q psy11568        107 S-PT-PKIEWL  115 (116)
Q Consensus       107 ~-P~-p~i~W~  115 (116)
                      . |. +.++|+
T Consensus       134 ~~P~~~~v~W~  144 (214)
T 1ow0_A          134 FSPKDVLVRWL  144 (214)
T ss_dssp             ESSSCCEEEEE
T ss_pred             eECCCcEEEEE
Confidence            5 53 489996

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.41  E-value=2.7e-07  Score=55.45  Aligned_cols=49  Identities=10%  Similarity=0.021  Sum_probs=31.8

Q ss_pred             cEEEEEccCCeeeeccccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      |.++| +++|..+...........    .+.|.|.++..+      |+|.|+|.|.|..+
T Consensus       128 ~~~~W-~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          128 DRFIL-TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPS------HRWMLRCYGSRRHI  180 (196)
T ss_dssp             SEEEE-EEC---CCEEEEECEECTTSCEEEEEECCCCBTT------BCEEEEEEEEETTE
T ss_pred             CEEEE-EccCCcccccccccccccCCCceeEEEeeecCcc------cCeeEEEEEEccCC
Confidence            68999 888887642111111111    247999999766      99999999999864

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.40  E-value=1e-06  Score=54.32  Aligned_cols=74  Identities=15%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC-----Cce--E--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA-----GVI--L--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGG   98 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-----g~~--~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~   98 (116)
                      .|.|.++..+      |+|.|.|.+.+..     +..  .  ...|.|...      ....|.+...+ ....+..|+.+
T Consensus        80 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~v~~~~-~~~~~~~g~~v  146 (230)
T 3n9g_H           80 YMELSSLRSE------DTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSA------STKGPSVFPLA-PSSKSTSGGTA  146 (230)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSS------CCBCCEEEEEC-CCCCCCTTCEE
T ss_pred             EEEECCCChh------hCEEEEEEEccCCCCcccccccccCCCEEEEEEec------CCCCCEEEecC-CCccccCCCCE
Confidence            4999999766      9999999998864     111  1  123444311      01125444322 22234579999


Q ss_pred             EEEeeecCc-C-CceeEE
Q psy11568         99 RLDCAAQGS-P-TPKIEW  114 (116)
Q Consensus        99 ~l~C~~~g~-P-~p~i~W  114 (116)
                      .|.|.+.+. | .+.++|
T Consensus       147 ~L~C~~~~~~P~~~~v~W  164 (230)
T 3n9g_H          147 ALGCLVKDYFPEPVTVSW  164 (230)
T ss_dssp             EEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEEeEECCCEEEEE
Confidence            999999885 4 345788

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.40  E-value=8e-07  Score=55.63  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC---------------------ceE--EEEEEEEeCcEeeeeccCCCceEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG---------------------VIL--SRFVHVKAGSVVSLLDIQGPLFRI   84 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g---------------------~~~--~~~~~v~~~~~~~~~~~~~p~~~~   84 (116)
                      .|.|.++..+      |+|.|.|.+.+..+                     ...  ...+.|...     ... .|.+..
T Consensus        79 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~-----~~~-~P~v~~  146 (248)
T 3u2s_H           79 YLQMNSLRVE------DTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA-----STK-GPSVFP  146 (248)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC-----CCB-CCEEEE
T ss_pred             EEEECCCCHH------HCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc-----CCC-CCEEEE
Confidence            4999999766      99999999987421                     011  123333310     011 255543


Q ss_pred             cCCCeEEEeCCCcEEEEeeecCc-C-CceeEEe
Q psy11568         85 EPPYRFEFSNESGGRLDCAAQGS-P-TPKIEWL  115 (116)
Q Consensus        85 ~~~~~~~~~~g~~~~l~C~~~g~-P-~p~i~W~  115 (116)
                      .+ ....+..|+.+.|.|.+.+. | .+.++|+
T Consensus       147 ~~-~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~  178 (248)
T 3u2s_H          147 LA-PSSKSTSGGTAALGCLVKDYFPEPVTVSWN  178 (248)
T ss_dssp             EC-CC------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred             eC-CCccccCCCcEEEEEEEeeEECCCeEEEEe
Confidence            33 22334569999999999884 4 3468896

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.40  E-value=2.9e-06  Score=46.34  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=37.5

Q ss_pred             CcEEEEEccCC---eeeeccccceEEeeCC----eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDN---TVIAYVKDLRIALSNG----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g---~~~~~~~~~~~~~~~~----~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|+++|-+-+|   .+|..... .....++    .|.+..+-..      |+|.|+|.|.+..|...+
T Consensus        41 rP~VtWcKln~~~c~~L~~~~q-~w~E~~N~s~fvLhf~~V~~s------DsGsYRCsAn~~sg~ieS  101 (120)
T 2aw2_A           41 RPHVTWCKLNGTTCVKLEDRQT-SWKEEKNISFFILHFEPVLPN------DNGSYRCSANFQSNLIES  101 (120)
T ss_dssp             CCEEEEEEECSSCEEECCSSCE-EEEECSSCEEEEEEESSCCGG------GCEEEEEEEEETTEEEEC
T ss_pred             CCceEEEecCCceEEECccccc-cceecCCeeEEEEEEeeeeEc------CCcceEEEeeCCCCcEEe
Confidence            38999966665   55543111 1123334    5888888655      999999999999998886

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.39  E-value=1.7e-06  Score=52.60  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=41.0

Q ss_pred             CcEEEEEcc----CCeeeeccccce--EE-------eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIR----DNTVIAYVKDLR--IA-------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~----~g~~~~~~~~~~--~~-------~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.+.| ++    +|..+.......  ..       ...+.|.|.++..+      |+|.|+|.|.|..|.... ..|.|
T Consensus       147 ~p~v~W-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V  219 (231)
T 3ojm_B          147 QPHIQW-IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA------DAGEYICKVSNYIGQANQSAWLTV  219 (231)
T ss_dssp             CCEEEE-EEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEE-EECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHH------HCeEEEEEEEeccceEeeEEEEEE
Confidence            378999 66    777664321111  11       12346999999766      999999999999988763 55555


Q ss_pred             Ee
Q psy11568         67 KA   68 (116)
Q Consensus        67 ~~   68 (116)
                      ..
T Consensus       220 ~~  221 (231)
T 3ojm_B          220 LP  221 (231)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.39  E-value=4.6e-07  Score=49.81  Aligned_cols=36  Identities=25%  Similarity=0.518  Sum_probs=32.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|+..+ .+..+.+|+++.|.|.+.|.|.|.++|+.
T Consensus        14 P~f~~~p-~~~~v~~G~~~~l~C~~~G~P~p~v~W~k   49 (107)
T 3knb_B           14 PCFLRFP-RPVRVVSGAEAELKCVVLGEPPPVVVWEK   49 (107)
T ss_dssp             EEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred             CEEEeCC-CcEEEeCCCcEEEEEEEEEecCCEEEEEE
Confidence            6776666 78899999999999999999999999973

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.37  E-value=1.5e-06  Score=54.41  Aligned_cols=74  Identities=16%  Similarity=0.296  Sum_probs=43.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC---------ce-E--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG---------VI-L--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNE   95 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g---------~~-~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g   95 (116)
                      .|.|.+++.+      |+|.|.|.+.+..+         .. .  ...|.|...      ....|.+.... ....+..|
T Consensus       103 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~i~~~~-~~~~~~~g  169 (256)
T 3sob_H          103 YLQMNSLRAE------DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSA------STKGPSVFPLA-PSSKSTSG  169 (256)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSS------CCBCCEEEEEC-CC-----T
T ss_pred             EEEECCCCcc------cCEEEEEEEecCCCccccccccceeEECCCEEEEEecC------CCCCCEEEEEC-CCcccccC
Confidence            3999999766      99999999987531         11 1  123444321      01125554333 22345679


Q ss_pred             CcEEEEeeecCc-C-CceeEE
Q psy11568         96 SGGRLDCAAQGS-P-TPKIEW  114 (116)
Q Consensus        96 ~~~~l~C~~~g~-P-~p~i~W  114 (116)
                      +.+.|.|.+.+. | .+.++|
T Consensus       170 ~~v~L~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          170 GTAALGCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcEEEEEEEEEEECCCeEEEE
Confidence            999999999884 4 346788

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.37  E-value=9.9e-07  Score=53.61  Aligned_cols=61  Identities=10%  Similarity=0.013  Sum_probs=39.6

Q ss_pred             CcEEEEEcc-CCeeeeccccceEE-eeCCe---EEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIR-DNTVIAYVKDLRIA-LSNGS---LMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~-~g~~~~~~~~~~~~-~~~~~---l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.+.| ++ ++..+......... ..++.   |.|.++..+      |+|.|+|.+.|..|.... ..|.|..
T Consensus       140 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          140 EAEVFW-KDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLG------ANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             CCEEEE-ECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECC------TTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             CCeEEE-EcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeC------CCCEEEEEEECCCCCCceEEEEEEeC
Confidence            378999 55 67665431111111 22332   778888655      999999999999988764 5555544

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.35  E-value=3.2e-07  Score=49.82  Aligned_cols=36  Identities=25%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...+ .+..+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus         6 P~i~~~p-~~~~v~~G~~~~l~C~~~g~P~p~v~W~k   41 (100)
T 3knb_A            6 PKIEALP-SDISIDEGKVLTVACAFTGEPTPEVTWSC   41 (100)
T ss_dssp             EEECCCC-SEEEEETTSEEEEEEEEEEESCCEEEEEE
T ss_pred             CEEEeCC-CcEEEeCCCeEEEEEEEEEecCCEEEEEE
Confidence            5554444 88899999999999999999999999973

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.34  E-value=2.3e-06  Score=47.36  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .+|.|.++..+      |+|.|.|.+.+..+.... ..|.|
T Consensus        89 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~~~~~~~L~V  123 (126)
T 1eaj_A           89 ASINVTNLQLS------DIGTYQCKVKKAPGVANKKIHLVV  123 (126)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECcCChH------HCeEEEEEEEcCCccCCcEEEEEE
Confidence            47999999766      999999999998765442 44444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.34  E-value=3.4e-07  Score=54.97  Aligned_cols=49  Identities=14%  Similarity=0.241  Sum_probs=34.8

Q ss_pred             cEEEEEccCCeeeeccccc-e--EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-R--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~--~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +.+.| +++|..+...... .  ....++.|.|.++..+      |+|.|+|.|.|..+
T Consensus       128 ~~~~w-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          128 DTFLL-CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSV------HGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEE-EETTCCCGGGSEEEEEEEEEEEEEEEECSCCGG------GCEEEEEEEECGGG
T ss_pred             CEEEE-EeCCCcccceeecccccccCcceEEEeCCCccc------CCCeEEEEEEcCCC
Confidence            56889 8888766432111 1  1223457999999766      99999999999876

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.31  E-value=9.3e-07  Score=53.06  Aligned_cols=53  Identities=9%  Similarity=0.125  Sum_probs=33.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEe-eC-CeEE---ecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL-SN-GSLM---FPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~-~~-~~l~---i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++||.++..... +... .+ +...   +..+..+      |+|.|+|.|.|..|....
T Consensus       136 ~p~i~W-~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~------d~g~Y~C~a~n~~~~~s~  193 (201)
T 1dr9_A          136 EPHLSW-LENGEELNAINT-TVSQDPETELYAVSSKLDFNMT------TNHSFMCLIKYGHLRVNQ  193 (201)
T ss_dssp             CEEEEE-EESSCEECCSEE-EEEECTTTCCEEEEEEEEEETT------SCEEEEEEEEETTCCEEE
T ss_pred             CCEEEE-EECCEECccccc-eEEecCCCcEEEEEEEEEEEec------CCCEEEEEEecCcceeee
Confidence            378999 889988864221 2222 22 2222   2334333      999999999999987654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.30  E-value=1.2e-06  Score=53.88  Aligned_cols=74  Identities=15%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc------eE----EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV------IL----SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESG   97 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~------~~----~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~   97 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.      ..    ...|.|...      ....|.+...+ ....+..|..
T Consensus        80 sL~I~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~------~~~~P~i~~~~-~~~~~~~g~~  146 (226)
T 3mlr_H           80 YLQWTTLQAS------DTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSG------TTKGPSVFPLA-PSSKSTSGGT  146 (226)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCC------CCBCCEEEEEE-EEECSTTSSE
T ss_pred             EEEECCCCcc------cCEEEEEeEccCCCcccccchhhhhCCccEEeeccC------CCCCCcEEEec-CcccccCCCC
Confidence            4999999766      999999998775310      00    123333221      01124443222 2223457899


Q ss_pred             EEEEeeecCc-C-CceeEE
Q psy11568         98 GRLDCAAQGS-P-TPKIEW  114 (116)
Q Consensus        98 ~~l~C~~~g~-P-~p~i~W  114 (116)
                      +.|.|.+.+. | .+.++|
T Consensus       147 ~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H          147 AALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             EEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEEEEEECCCeEEEE
Confidence            9999999885 4 457888

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.30  E-value=4.2e-06  Score=45.94  Aligned_cols=43  Identities=21%  Similarity=0.408  Sum_probs=33.4

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      ++.| ++||..+..      ...+..+.|.+++++      |+|.|+|.+.+..+.
T Consensus        43 ~~~w-~k~g~~l~~------~~~~~~l~i~~v~~~------dsG~Y~C~~~~~~~~   85 (108)
T 4hwn_A           43 LFSF-YKDGRIVQS------RGLSSEFQIPTASED------HSGSYWCEAATEDNQ   85 (108)
T ss_dssp             EEEE-EETTEEEEE------EESCCEEEESSCCGG------GCEEEEEEEECTTSS
T ss_pred             EEEE-EECCcCccC------CCcccEEEeCccCcc------cCeEEEEEEEeCCCc
Confidence            4889 889887642      224568999999766      999999999997653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.26  E-value=1.6e-06  Score=46.03  Aligned_cols=36  Identities=17%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+..|+.+.|.|.+.|.|.|.++|+.
T Consensus         3 P~i~~~~-~~~~v~~G~~~~l~C~~~g~P~p~i~W~k   38 (93)
T 1wit_A            3 PKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTV   38 (93)
T ss_dssp             CEECCCC-CEEEECTTBCCEEEEEEECCSSCEEEEEC
T ss_pred             CeEEcCC-CceEEeCCCEEEEEEEEEEcCCCEEEEEE
Confidence            6664444 78889999999999999999999999974

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.26  E-value=1.1e-05  Score=44.80  Aligned_cols=38  Identities=16%  Similarity=0.231  Sum_probs=27.8

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEc-CCCceEE-EEEEEEeC
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVILS-RFVHVKAG   69 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~~-~~~~v~~~   69 (116)
                      +..|.|.+++.+      |+|.|.|...+ ..|.... ..|.|..+
T Consensus        70 ~~sL~I~~v~~~------D~G~Y~C~v~~~~~g~~~~~~~L~V~~p  109 (117)
T 3q0h_A           70 GLGLTLQSLTVN------DTGEYFCIYHTYPDGTYTGRIFLEVLES  109 (117)
T ss_dssp             TTCEEECSCCGG------GCEEEEEEEEEETTCCEEEEEEEEEECC
T ss_pred             ceEEEEeeCChh------hCEEEEEEEEECCCCCeEEEEEEEEEcc
Confidence            458999999766      99999998654 4565553 55666654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.25  E-value=3.4e-07  Score=54.55  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      |.+.| +++|..+..  .......++.|.|.++..+      |+|.|+|.|.|..+
T Consensus       122 ~~~~w-~k~g~~~~~--~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          122 DQFAL-YKEGDPAPY--KNPERWYRASFPIITVTAA------HSGTYRCYSFSSRD  168 (184)
T ss_dssp             CEEEE-EECCCCTTS--CCCCEEEEESSSEEEETTC------CSEEEEEEEECTTS
T ss_pred             cEEEE-EECCCcCcc--eecCCCceEEEEEccCCcc------CCeEEEEEEEeCCC
Confidence            67899 888877653  1112233457889999666      99999999999864

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.25  E-value=8.8e-07  Score=54.39  Aligned_cols=46  Identities=11%  Similarity=0.132  Sum_probs=33.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.+.| +++|..+..  .......++.|.|.++..+      |+|.|+|.|.|..
T Consensus       135 ~~~~W-~k~g~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~  180 (218)
T 1uct_A          135 DRFSL-AKEGELSLP--QHQSGEHPANFSLGPVDLN------VSGIYRCYGWYNR  180 (218)
T ss_dssp             SEEEE-EETTCSSCC--SEEECSSSEEEECCSCCGG------GCEEEEEEEECTT
T ss_pred             CEEEE-EECCCcccc--cccCCCccCEEEEccCCcc------cCEEEEEEEEcCC
Confidence            67899 888887653  1111223458999999766      9999999999864

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.22  E-value=1.1e-05  Score=44.13  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=25.7

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK   67 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~   67 (116)
                      +..|.|.++..+      |+|.|.|.+.+.........|.|.
T Consensus        72 ~~sL~I~~v~~~------DsG~Y~C~v~~~~~~~~~~~L~V~  107 (110)
T 2ptt_A           72 NGALHISNVRKE------DKGTYYMRVLRETENELKITLEVF  107 (110)
T ss_dssp             TCCEEESSCCGG------GCEEEEEEEESSSBCCEEEEEEEE
T ss_pred             CccEEECCCCcc------cCeEEEEEEEcCCCcEEEEEEEEE
Confidence            458999999766      999999999876532223444443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.22  E-value=2.2e-06  Score=51.44  Aligned_cols=51  Identities=14%  Similarity=0.101  Sum_probs=34.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++++.++..   ......++   .+.+.++..+      |+|.|+|.|.|..|....
T Consensus       132 ~p~v~W-~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~------d~G~Y~C~a~N~~g~~~~  185 (202)
T 3bp6_B          132 LAEVSW-QNVSVPANT---SHIRTPEGLYQVTSVLRLKPQ------PSRNFSCMFWNAHMKELT  185 (202)
T ss_dssp             CCEEEE-TTCCSCCEE---EEEECTTSCEEEEEEEEECCC------TTCCEEEEEEETTTTEEE
T ss_pred             CceEEE-EeCCCCccC---ceeeCCCCCEEEEEEEEEEcC------CCCEEEEEEEcCCccccc
Confidence            378999 888776542   11112222   3456677544      999999999999987764

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.22  E-value=5.2e-06  Score=45.06  Aligned_cols=28  Identities=18%  Similarity=0.120  Sum_probs=23.0

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      ..|.|.++..+      |+|.|.|.+.+..+...
T Consensus        72 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~~~   99 (109)
T 2oyp_A           72 VSLIIKNVTLD------DHGTYCCRIQFPGLMND   99 (109)
T ss_dssp             CCEEECSCCGG------GCEEEEEEECCSSTTCC
T ss_pred             EeEEEccCCCh------hCeEEEEEEEcCCcccc
Confidence            37999999766      99999999999865444

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.21  E-value=4.3e-07  Score=54.31  Aligned_cols=46  Identities=15%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.+.| +++|..+..  .......++.|.|.++..+      |+|.|+|.|.|..
T Consensus       127 ~~~~w-~k~g~~~~~--~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~n~~  172 (188)
T 1oll_A          127 SMFLL-LKEGRSSHV--QRGYGKVQAEFPLGPVTTA------HRGTYRCFGSYNN  172 (188)
T ss_dssp             SEEEE-EEESSSCEE--EEEECSSEEEEEEEECCGG------GCEEEEEECEEET
T ss_pred             CEEEE-EECCccccc--cccCCCceeEEEECCCCcC------CCcEEEEEEEcCC
Confidence            67899 888876642  1111123447999999766      9999999999864

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.19  E-value=3e-06  Score=46.27  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCC---ceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPT---PKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~---p~i~W~  115 (116)
                      |.|+..| ....+..|+++.|.|.+.|.|.   |.+.|+
T Consensus         5 p~f~~~p-~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~   42 (108)
T 3cx2_A            5 GLFVMRP-QDGEVTVGGSITFSARVAGASLLKPPVVKWF   42 (108)
T ss_dssp             CSCSBCC-CCEEEETTCCEEEEEEEECC-CCSCCEEEEE
T ss_pred             cEEEeCC-CcEEEeCCCCEEEEEEECCCccCCCcEEEEc
Confidence            7777776 7889999999999999999998   999997

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.18  E-value=1.1e-05  Score=48.57  Aligned_cols=70  Identities=11%  Similarity=0.098  Sum_probs=43.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCce-EecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLF-RIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .+.|.+++        +.|.|.|.+... |......+.|..      +..  |.. ...+ ....+.+|+.+.|.|.+.|
T Consensus        51 ~l~l~~vs--------~~g~y~C~~~c~-~~~~~~~~~l~V------~~~--P~~v~i~~-~~~~~~~G~~~tL~C~v~g  112 (185)
T 1iam_A           51 VYELSNVQ--------EDSQPMCYSNCP-DGQSTAKTFLTV------YWT--PERVELAP-LPSWQPVGKQLTLRCQVEG  112 (185)
T ss_dssp             EEEEEEEC--------SCBCCEEEEECS-SCEEEEECEEEE------EBC--CSEEEECC-CCSEECTTSEEEEEEEEEC
T ss_pred             EEEEEecC--------cCCEEEEEEECC-CCceEEEEEEEE------eCC--CCCCEEcc-CCccccCCCcEEEEEEcCC
Confidence            58888884        239999998655 333333332222      111  333 3333 3345789999999999999


Q ss_pred             c-CCc--eeEEe
Q psy11568        107 S-PTP--KIEWL  115 (116)
Q Consensus       107 ~-P~p--~i~W~  115 (116)
                      . |.+  .|+|+
T Consensus       113 ~~P~~~l~i~w~  124 (185)
T 1iam_A          113 GAPRAQLTVVLL  124 (185)
T ss_dssp             CBCGGGEEEEEE
T ss_pred             ccCCCCcEEEEE
Confidence            5 554  47997

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.17  E-value=3.8e-06  Score=50.72  Aligned_cols=47  Identities=17%  Similarity=0.337  Sum_probs=31.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|.++| ++++..+.. ..   ....+.|.|..+..+      |+|.|+|.|.|..+.
T Consensus       156 ~p~v~W-~~~~~~~~~-~~---~~~~~~L~i~~~~~~------~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          156 PLTFSW-TGNALSPLD-PE---TTRSSELTLTPRPED------HGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CCEEEE-ESSTTSSSC-SS---CCCSSEEEECCCTTC------CSCEEEEEEECC---
T ss_pred             CceEEE-eCCCCccCC-CC---ceeEEEEEEecccHH------cCcEEEEEEEeCCCC
Confidence            378999 788765321 11   134568999888655      999999999997643

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.16  E-value=4.7e-06  Score=50.02  Aligned_cols=44  Identities=18%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      |.|+| +++|..+.         .++.|.|.....     ..|+|.|+|.|.|..|...
T Consensus       140 p~i~W-~~~g~~l~---------~~~~l~i~~~~~-----~~d~G~Y~C~a~N~~g~~s  183 (193)
T 2if7_A          140 VSFRW-EALGNTLS---------SQPNLTVSWDPR-----ISSEQDYTCIAENAVSNLS  183 (193)
T ss_dssp             CEEEE-EETTEEEE---------SSSEEEEEECTT-----TCSCCEEEEEEEETTEEEE
T ss_pred             eEEEE-EeCCEEcC---------CCCeEEEEeccC-----cCCCCcEEEEEECCCCccc
Confidence            78999 88887654         233466643321     1289999999999998653

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.14  E-value=1.2e-05  Score=44.06  Aligned_cols=37  Identities=22%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEc-CCCceEE-EEEEEEe
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVILS-RFVHVKA   68 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~~-~~~~v~~   68 (116)
                      +.+|.|.++..+      |+|.|.|.+.+ ..|.... ..|.|.+
T Consensus        78 ~~sL~I~~v~~~------D~G~Y~C~v~~~~~~~~~~~~~L~V~~  116 (118)
T 3udw_C           78 NASLRMFGLRVE------DEGNYTCLFVTFPQGSRSVDIWLRVLA  116 (118)
T ss_dssp             BCCEEECSCCGG------GCEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcEEEEeecChH------HCeEEEEEEEECCCCCccceEEEEEEe
Confidence            347999999766      99999999998 5554443 4454443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.14  E-value=3.3e-06  Score=50.88  Aligned_cols=52  Identities=13%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +|.+.| ++++..+..... .....+      +.|.|.++..+      |+|.|+|.|.|..+...
T Consensus       151 ~~~~~w-~~~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~------d~g~YtC~a~N~~~~~~  208 (225)
T 4fmk_A          151 PARITW-ISSLGGEAKDTQ-EPGIQAGTVTIISRYSLVPVGRA------DGVKVTCRVEHESFEEP  208 (225)
T ss_dssp             CCEEEE-ECSSCCEEEEEE-EECSSTTCEEEEEEEEECCCGGG------TTCEEEEEEECTTCSSC
T ss_pred             CCEEEE-EECCccccCCcc-eEEecCCCEEEEEEEEEeeCCHH------HCCEEEEEEEcCCCCeE
Confidence            367889 666655432111 111122      24889988666      99999999999876543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.14  E-value=3.3e-06  Score=51.20  Aligned_cols=60  Identities=7%  Similarity=0.043  Sum_probs=33.3

Q ss_pred             CcEEEEEccC-CeeeeccccceE-EeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRD-NTVIAYVKDLRI-ALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~-g~~~~~~~~~~~-~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| +++ |..+........ ...++.+.+   ..+..+      |+|.|+|.|.|..|.... ..|.|.
T Consensus       145 ~p~i~W-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~------d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          145 KAEVIW-TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT------TNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             CCEEEE-EETTCCEECCEEEEEECC----CEEEEEEEEEECC------TTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEE-EECCCceecCccceEEEcCCCCCEEEEEEEEEecc------CCcEEEEEEEeCccceeeEEEEEec
Confidence            478999 665 766643211111 111222222   233333      999999999999987764 444444

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.12  E-value=1.7e-05  Score=45.13  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=27.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.++..+      |+|.|.|.+.+..|.... ..|.|..
T Consensus        86 sL~I~~v~~~------D~G~Y~C~v~~~~~~~~~~~~L~V~~  121 (139)
T 1pko_A           86 ALRIQNVRFS------DEGGYTCFFRDHSYQEEAAVELKVED  121 (139)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEccCCHH------HCEEEEEEEEcCCCceEEEEEEEEec
Confidence            6999999766      999999999998875443 4455543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.12  E-value=2.2e-06  Score=47.36  Aligned_cols=35  Identities=37%  Similarity=0.718  Sum_probs=31.0

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.++|+
T Consensus        10 P~i~~~p-~~~~v~~G~~v~L~C~~~g~P~p~v~W~   44 (117)
T 2v9t_A           10 PRIVEHP-SDLIVSKGEPATLNCKAEGRPTPTIEWY   44 (117)
T ss_dssp             EEEEECC-CCEEECTTCCEEECCEEEEESCCEEEEE
T ss_pred             CeeEcCC-CCEEEcCCCcEEEEEECCccCCCeEEEE
Confidence            6666665 7788999999999999999999999997

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.12  E-value=6.4e-06  Score=49.08  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=31.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|.++..       ..+.+|.+..  .+      |+|.|+|.|.|..+...+
T Consensus       129 ~p~i~W-~~~~~~l~~-------~~~~~l~~~~--~~------d~g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          129 DVELKL-YQGKEHLRS-------LRQKTMSYQW--TN------LRAPFKCKAVNRVSQESE  173 (180)
T ss_dssp             TCEEEE-EETTEEEEE-------ESSSEEEEEC--SC------CSSCEEEEEEETTEEEEE
T ss_pred             CCEEEE-EECCeECcC-------CCCCEEEEEE--hh------cCccEEEEEecCcCcccc
Confidence            478999 889887751       1233555522  33      999999999999876554

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.07  E-value=1e-05  Score=45.89  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=32.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus        22 P~~~~~p-~~~~v~~G~~v~L~C~~~g~P~p~i~W~k   57 (137)
T 3qr2_A           22 AGFVQAP-LSQQRWVGGSVELHCEAVGSPVPEIQWWF   57 (137)
T ss_dssp             CEEEECC-CCEEEETTSCEEEEEEEECSSCCEEEEEE
T ss_pred             CeEEcCC-CCEEEeCCCCEEEEEEEeeecCCeEEEEE
Confidence            7777776 78899999999999999999999999973

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.07  E-value=6.7e-06  Score=43.86  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus         6 P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~   40 (99)
T 1g1c_A            6 PKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWY   40 (99)
T ss_dssp             EEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred             CceEecC-cceEEcCCCcEEEEEEEEEeCCCEEEEE
Confidence            6666665 7788999999999999999999999997

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.07  E-value=6.8e-06  Score=44.19  Aligned_cols=35  Identities=17%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+
T Consensus         9 P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~   43 (103)
T 3qp3_A            9 PRITLRM-RSHRVPCGQNTRFILNVQSKPTAEVKWY   43 (103)
T ss_dssp             EEEEECC-CCEEEETTCCEEEEEEEEEESCCEEEEE
T ss_pred             CEEEeCC-cceEEeCCCeEEEEEEEEecCCCEEEEE
Confidence            6666665 7888999999999999999999999997

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.06  E-value=7.6e-06  Score=44.61  Aligned_cols=36  Identities=25%  Similarity=0.641  Sum_probs=31.4

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus         9 P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~k   44 (110)
T 2dm2_A            9 PFFEMKL-KHYKIFEGMPVTFTCRVAGNPKPKIYWFK   44 (110)
T ss_dssp             CCBSSCC-CCEEEETTCCEEEEEEBCCSSCCEEEEEC
T ss_pred             CEEEecC-cCeEEeCCCeEEEEEEEEecCCCEEEEEE
Confidence            6666655 77889999999999999999999999974

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.06  E-value=1.9e-05  Score=47.30  Aligned_cols=46  Identities=17%  Similarity=0.085  Sum_probs=31.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      .|.++| +++|..+.   .     ....+.+.. ..      .|+|.|+|.|.|..|...+.
T Consensus       129 ~~~~~W-~~~g~~l~---~-----~~~~i~~~~-~~------~d~G~Y~C~a~N~~~~~~s~  174 (182)
T 1hnf_A          129 DPELNL-YQDGKHLK---L-----SQRVITHKW-TT------SLSAKFKCTAGNKVSKESSV  174 (182)
T ss_dssp             SCEEEE-EESSCEEE---E-----ESSCEEEEC-CS------CEEEEEEEEEECSSCEEEEE
T ss_pred             CCEEEE-EECCEECC---C-----CCcEEEEec-cc------CCCcEEEEEEEeCCCCcEEc
Confidence            378999 88888772   1     222344332 22      39999999999999877653

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.05  E-value=8.1e-07  Score=53.75  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=33.9

Q ss_pred             cEEEEEccCCeeeeccccceE-------EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRI-------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~-------~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      |.|+| +++|+++........       ....+.|.|.++..+      |+|.|+|.|.|..+.
T Consensus       145 ~~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          145 ATVTW-KANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWK------SHNRVSCQVTHEGET  201 (212)
T ss_dssp             CEEEE-EETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHH------TCSCEEEEEECTTTT
T ss_pred             cEEEE-EECCeEcCCCeecCCceecCCCceEEEEEEEchhhcC------CCCeEEEEEEeCCce
Confidence            68999 899998864211000       011134778888655      999999999998754

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.05  E-value=8.6e-06  Score=44.74  Aligned_cols=35  Identities=14%  Similarity=0.164  Sum_probs=30.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+
T Consensus         8 p~i~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~   42 (114)
T 2cqv_A            8 PQIIQFP-EDQKVRAGESVELFGKVTGTQPITCTWM   42 (114)
T ss_dssp             CEESCCC-CSEEEETTCCEEEEEEEESSSSCEEEEE
T ss_pred             CEEEeCC-CCeEEeCCCeEEEEEEEEcCCCCEEEEE
Confidence            5555544 7889999999999999999999999997

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.05  E-value=8.4e-06  Score=43.47  Aligned_cols=35  Identities=23%  Similarity=0.525  Sum_probs=30.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.+.|+
T Consensus         6 P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~   40 (99)
T 1u2h_A            6 PTFKVSL-MDQSVREGQDVIMSIRVQGEPKPVVSWL   40 (99)
T ss_dssp             EEEEECC-CCEEEETTCCEEEEEEEEEESCCEEEEE
T ss_pred             CEEEEcC-CceEecCCCEEEEEEEEEEcCCCEEEEE
Confidence            6666665 6778899999999999999999999997

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.04  E-value=7.2e-05  Score=47.75  Aligned_cols=44  Identities=11%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      |.|.| ++||+.+... +.+ ...+  +.|.|.++.+.      | |.|.|.+.+.
T Consensus        41 p~i~W-~~~g~~i~~~-~~~-~~~~~~~~L~i~~~~~~------~-g~Y~C~a~~~   86 (303)
T 1i1r_A           41 NYIVW-KTNHFTIPKE-QYT-IINRTASSVTFTDIASL------N-IQLTCNILTF   86 (303)
T ss_dssp             GGEEE-EETTEECCGG-GCE-EEETTEEEEEECSCCCS------E-EEEEEEEEET
T ss_pred             hheEE-EECCEECChh-hee-eeCCcEEEEEEcCcCCC------c-eEEEEecccC
Confidence            78999 8999988532 222 2233  36999999543      4 9999999884

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=8.7e-06  Score=43.57  Aligned_cols=35  Identities=31%  Similarity=0.671  Sum_probs=30.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.++|+
T Consensus         9 P~i~~~p-~~~~v~~G~~~~l~C~~~g~p~p~v~W~   43 (100)
T 2edj_A            9 PIILQGP-ANQTLAVDGTALLKCKATGDPLPVISWL   43 (100)
T ss_dssp             CEEEECC-CCEEEESSSEEEECCEEECSSCCEEEEE
T ss_pred             CEEEeCc-CCEEEcCCCcEEEEEEEEEcCCCEEEEE
Confidence            6666665 7788899999999999999999999997

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.04  E-value=3.2e-06  Score=52.78  Aligned_cols=46  Identities=15%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +.+.| +++|..+..  .......++.|.|.++..+      |+|.|+|.+.|..
T Consensus       130 ~~~~w-~k~g~~~~~--~~~~~~~~~~l~I~~v~~~------d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          130 SMFLL-LKEGRSSHV--QRGYGKVQAEFPLGPVTTA------HRGTYRCFGSYNN  175 (242)
T ss_dssp             SEEEE-EECSSSCEE--EEEECSSEEEEEEEECCGG------GCEEEEEEEEEET
T ss_pred             CEEEE-EECCCccCc--cccCCCceEEEEeCCCccc------cCEEEEEEEECCC
Confidence            57889 888876642  1111122347999999766      9999999999864

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.03  E-value=2.2e-06  Score=51.79  Aligned_cols=52  Identities=12%  Similarity=0.194  Sum_probs=34.8

Q ss_pred             cEEEEEccCCeeeecccc--ceEE-----eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVKD--LRIA-----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~--~~~~-----~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +.|+| ++||.++.....  ....     ...+.|.|.++..+      |+|.|+|.|.|..+...
T Consensus       146 ~~v~W-~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~~~  204 (213)
T 3mj8_L          146 VAVTW-EADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWK------SRNTFICKVTHGGNTVE  204 (213)
T ss_dssp             CEEEE-EETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHH------SCSCEEEEEEETTEEEE
T ss_pred             eEEEE-EcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcC------CCCEEEEEEEECCccEE
Confidence            38999 999998863110  0011     11235888888655      99999999999985443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.02  E-value=1.5e-05  Score=41.96  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=29.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.+...| ....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus         4 ~~i~~~p-~~~~v~~G~~~~l~C~~~g~p~p~i~W~   38 (91)
T 3bfo_A            4 LQICVEP-TSQKLMPGSTLVLQCVAVGSPIPHYQWF   38 (91)
T ss_dssp             CEEEECC-CCEEECTTSCEEEECEEECSSCCEEEEE
T ss_pred             eEEEECC-CccEecCCCcEEEEEEeccCCCCEEEEE
Confidence            4555555 6778899999999999999999999997

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.01  E-value=1.3e-05  Score=48.45  Aligned_cols=50  Identities=16%  Similarity=0.227  Sum_probs=31.5

Q ss_pred             cEEEEEccCCeeeeccccce------EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR------IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~------~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      +.|+| +++|.++.......      .......|.|.....+      |.|.|+|.|.|..+.
T Consensus       124 ~~i~W-~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d------~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          124 LEIDL-LKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED------IGKVLVCRAKLHIDE  179 (202)
T ss_dssp             EEEEE-EETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGG------TTCEEEEEEEECSCC
T ss_pred             eEEEE-EeCCeECcccccccccCcCcceEEEEEEEEEeeecc------CCCeEEEEEEccccC
Confidence            37899 89998875321000      0111123566666444      899999999998765

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.00  E-value=1.9e-05  Score=48.20  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=34.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      |.|+| +++|..+...........++      .|.|.....+      |+|.|+|.+.|..+.....
T Consensus       155 ~~v~W-~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~ytC~v~n~~~~~~~~  214 (220)
T 2fbj_H          155 MNVTW-GKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECP------EGESVKCSVQHDSNPVQEL  214 (220)
T ss_dssp             EEEEE-SCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSC------TTCEEEEEEEETTSCCEEE
T ss_pred             EEEEE-ecCCEecceEecCceECCCCCEEEEEEEEECHHHcC------CCCeEEEEEEcCCCceEcC
Confidence            58999 88887652111111111222      3677666444      8999999999999877654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.00  E-value=5.2e-06  Score=50.55  Aligned_cols=48  Identities=10%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CcEEEEEccCCeeeeccc----cceEE-----eeC------CeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          1 MYVLLWLIRDNTVIAYVK----DLRIA-----LSN------GSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~----~~~~~-----~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|+| +++|.++....    .....     ..+      +.|.|.....+      |+|.|+|.|.|.
T Consensus       149 ~p~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~d------d~g~Y~C~a~n~  211 (231)
T 2pet_A          149 APKITW-YRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDD------RDASFHCAAHYS  211 (231)
T ss_dssp             CCEEEE-EETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGG------GGCEEEEEEEEE
T ss_pred             CCEEEE-EECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhh------CCceEEEEEEcC
Confidence            478999 99999886432    11111     111      34666644322      699999999995

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.00  E-value=1.1e-05  Score=43.97  Aligned_cols=45  Identities=11%  Similarity=0.053  Sum_probs=30.4

Q ss_pred             cEEEEEccCCeeeeccccceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +.+.| +++|..+..   .+...  .+..|.|.+++++      |+|.|.|.+.|..
T Consensus        33 ~~~~w-~k~g~~~~~---~~~~~~~~~~~l~I~~v~~~------dsG~Y~C~~~n~~   79 (105)
T 2vsd_A           33 AWVQL-WLNGTLRFD---KEKDKEQDAAEFSFAVTNLE------DAGTYQCRYQVSE   79 (105)
T ss_dssp             EEEEE-EETTEEEEE---EEECTTCSEEEEEEECCSGG------GCEEEEEEEEEET
T ss_pred             cEEEE-EECCcccee---eeccCCCCEEEEEECCCCHH------HCeEEEEEEEcCC
Confidence            35678 788876532   11111  1236899999766      9999999999864

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.00  E-value=7e-06  Score=45.47  Aligned_cols=35  Identities=26%  Similarity=0.601  Sum_probs=31.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|+..+ ....+.+|+++.|.|.+.|.|.|.+.|+
T Consensus        16 p~f~~~p-~~~~v~~G~~v~L~C~~~g~p~p~v~W~   50 (116)
T 2kkq_A           16 PMFIYKP-QSKKVLEGDSVKLECQISAIPPPKLFWK   50 (116)
T ss_dssp             CCBSSCC-CCEEEETTEEEEEEEEBCCBSCCEEEEE
T ss_pred             CeEEeCC-CcEEEeCCCcEEEEEEEeccCCCEEEEE
Confidence            6776666 7889999999999999999999999997

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.00  E-value=3.9e-05  Score=49.63  Aligned_cols=56  Identities=18%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEe
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKA   68 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~   68 (116)
                      |.|.| ++++..+. ....+....++.|.|.++.+.      |+|.|+|.+   .|... +..|.|..
T Consensus        37 ~~i~W-~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~---~g~~~~~~~L~V~~   93 (325)
T 1n26_A           37 ATVHW-VLRKPAAG-SHPSRWAGMGRRLLLRSVQLH------DSGNYSCYR---AGRPAGTVHLLVDV   93 (325)
T ss_dssp             SEEEE-EEECSSSS-CCCEEEEEESSEEEECSCCGG------GCEEEEEES---SSSCSCEEEEEECC
T ss_pred             ceEEE-EECCccCC-ccccccccccceEEecccchh------hCeEeEEEe---CCEEeeeEEEEecc
Confidence            68999 66665442 112234456789999999766      999999993   45444 35555543

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=7.8e-06  Score=43.67  Aligned_cols=35  Identities=29%  Similarity=0.589  Sum_probs=30.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+
T Consensus        12 P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~   46 (99)
T 2yr3_A           12 PSFSSVL-KDCAVIEGQDFVLQCSVRGTPVPRITWL   46 (99)
T ss_dssp             EEEEECC-CCEEECTTCCEEEECEEEEESCCCCEEE
T ss_pred             CceeecC-CCCEEeCCCeEEEEEEEeeeCCCeEEEE
Confidence            6666665 7788999999999999999999999997

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=97.98  E-value=1.1e-05  Score=45.87  Aligned_cols=24  Identities=13%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.++..+      |+|.|.|.+.|..|
T Consensus        78 ~L~I~~~~~~------DsG~Y~C~a~n~~g  101 (133)
T 3khq_A           78 TLTIQNIQYE------DNGIYFCKQKCDSA  101 (133)
T ss_dssp             EEEECSCCGG------GCEEEEEEESSCC-
T ss_pred             EEEECCCChH------HCEEEEEEEEeCCC
Confidence            5999999766      99999999999875

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=7.9e-06  Score=44.47  Aligned_cols=36  Identities=31%  Similarity=0.672  Sum_probs=32.0

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus        10 P~i~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~~   45 (110)
T 2dm3_A           10 PHFLQAP-GDLTVQEGKLCRMDCKVSGLPTPDLSWQL   45 (110)
T ss_dssp             CEEEECC-CEEEEESSSCBCCEEEEECSSCCEEECBB
T ss_pred             CcEEeCC-CcEEEeCCCEEEEEEEEEEcCCCEEEEEE
Confidence            7777766 78899999999999999999999999973

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.95  E-value=8.1e-06  Score=43.60  Aligned_cols=35  Identities=26%  Similarity=0.544  Sum_probs=30.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.++|+
T Consensus         6 P~~~~~p-~~~~~~~G~~~~l~C~~~g~p~p~v~W~   40 (100)
T 2kdg_A            6 PRFIQVP-ENMSIDEGRFCRMDFKVSGLPAPDVSWY   40 (100)
T ss_dssp             EECCCCC-CCEEEETTCCEEEEEECEEESCCEEEEE
T ss_pred             CeEEeCC-CCEEecCCCEEEEEEEEEeeCCCEEEEE
Confidence            5555555 7788899999999999999999999997

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=97.94  E-value=1.7e-05  Score=42.22  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.+.|+
T Consensus         7 P~i~~~~-~~~~v~~G~~~~l~C~~~g~p~p~v~W~   41 (99)
T 3puc_A            7 PVIVTGL-QDTTVSSDSVAKFAVKATGEPRPTAIWT   41 (99)
T ss_dssp             EEEEECC-CCEEEESSSCEEEEEEEEEESCCEEEEE
T ss_pred             CEEEecC-ccEEEeCCCcEEEEEEEEecCCCEEEEE
Confidence            6666665 7788999999999999999999999997

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=97.94  E-value=7e-06  Score=44.74  Aligned_cols=36  Identities=22%  Similarity=0.601  Sum_probs=31.7

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...| ....+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus        15 ~~i~~~p-~~~~v~~G~~v~L~C~~~g~p~p~v~W~k   50 (106)
T 1nct_A           15 ARILTKP-RSMTVYEGESARFSCDTDGEPVPTVTWLR   50 (106)
T ss_dssp             CEEEECC-CCEEESSSSCEECCEEEECSSCCBCCBCS
T ss_pred             CEEEECC-CCEEEeCCCcEEEEEEEEEcCCCEEEEEE
Confidence            6666666 78899999999999999999999999973

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.93  E-value=1.2e-05  Score=44.39  Aligned_cols=36  Identities=8%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus        14 ~~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~v~W~k   49 (115)
T 2cr6_A           14 VHIIEDL-EDVDVQEGSSATFRCRISPANYEPVHWFL   49 (115)
T ss_dssp             CEEEECC-CEEEEETTSCEECCCEEESTTCCSCEEEE
T ss_pred             CeEeccC-ccEEEeCCCcEEEEEEEcCCCCCccEEEE
Confidence            3454555 88899999999999999999999999973

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=97.93  E-value=1.7e-05  Score=44.62  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=26.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.|.+++.+      |+|.|.|.+.|..|.... ..|.|
T Consensus        85 sL~I~~v~~~------D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           85 SLRLKNVQLT------DAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             CEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEECCCChH------HCEEEEEEEEeCCCeEEEEEEEEE
Confidence            6999999766      999999999999877664 44444

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.93  E-value=1.6e-05  Score=49.95  Aligned_cols=57  Identities=14%  Similarity=0.212  Sum_probs=26.9

Q ss_pred             CCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         42 DVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        42 ~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.|.+.|.|.+.|..|.....       .        ...+...+ ....+.+|+++.|.|.+.+ +.+.+.|+
T Consensus         5 ~~~~~~y~~~~~~~~g~~~~~-------~--------~~~v~~~p-~~v~v~~G~~v~L~C~~~~-~~~~v~W~   61 (270)
T 3qib_D            5 RADLIAYLKQATKGGGGSGGG-------G--------GMKVIQTP-RYLVKGQGQKAKMRCIPEK-GHPVVFWY   61 (270)
T ss_dssp             --------------------------------------CCCEEEC-SEEEEETTSCEEEEEECCT-TCCEEEEE
T ss_pred             hhhHHHHHHHHhccCCccccc-------c--------ceeEEeCC-CeEEEcCCCCEEEEEEecC-CCceEEEE
Confidence            559999999999987644321       0        13444444 7788899999999999866 78899996

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.93  E-value=3.4e-06  Score=50.92  Aligned_cols=49  Identities=12%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             EEEEEccCCeeeecc-cc-ceEE-e------eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          3 VLLWLIRDNTVIAYV-KD-LRIA-L------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~-~~-~~~~-~------~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|+| +++|.++... .. .... .      ..+.|.|.++..+      |+|.|+|.|.|....
T Consensus       145 ~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          145 NVKW-KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTST  202 (213)
T ss_dssp             EEEE-EETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------HCCEEEEEEECTTCS
T ss_pred             EEEE-EcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccC------CCCEEEEEEEEccCC
Confidence            7999 8899987642 00 0000 0      1127889999665      999999999998643

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=97.92  E-value=8.8e-05  Score=40.36  Aligned_cols=29  Identities=10%  Similarity=0.199  Sum_probs=23.8

Q ss_pred             CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         26 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        26 ~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +.+|.|.++..+      |+|.|.|.+.+..+...
T Consensus        68 ~~sL~I~~v~~~------D~G~Y~C~v~~~~~~~~   96 (110)
T 1ncn_A           68 SWTLRLHNLQIK------DKGLYQCIIHHKKPTGM   96 (110)
T ss_dssp             TTEEEECSCCGG------GCEEEEEEEEEECSSSE
T ss_pred             CEEEEEcCCChH------HCEEEEEEEEcCCCCce
Confidence            458999999766      99999999998866543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=97.92  E-value=2.9e-05  Score=49.84  Aligned_cols=49  Identities=8%  Similarity=0.010  Sum_probs=33.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC---CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      |.|.| ++||+.+... +.+....+   +.|.|.++.+.      |+|.|.|.+.+..+.
T Consensus        35 ~~i~W-~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~------d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B           35 PQILW-RLGAELQPGG-RQQRLSDGTQESIITLPHLNHT------QAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SCCEE-ESSSCBCTTC-EECCCSSSCCCEEEEESCCCSS------EEEEEEEEESSSSEE
T ss_pred             cceEE-EeCCEECCcc-ceEEEecCeEEEEEEEeccCCC------ccceEEeeecCCCce
Confidence            77899 8999877421 11111222   35999999665      999999998765443

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=97.91  E-value=3.9e-05  Score=42.10  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.++..+      |+|.|.|.+.|..|
T Consensus        72 ~L~I~~v~~~------DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           72 TLHIRDAQLE------DSGTYFCAAEASSG   95 (113)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSSS
T ss_pred             EEEECCCChh------hCEEEEEEEecCCC
Confidence            7999999766      99999999999865

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=97.91  E-value=1.2e-05  Score=50.77  Aligned_cols=20  Identities=10%  Similarity=0.374  Sum_probs=17.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.++..+      |+|.|.|.+.
T Consensus       103 sL~I~~v~~~------DsG~Y~C~~~  122 (267)
T 3u1s_H          103 YMELRGLTAD------DTAIYYCLTG  122 (267)
T ss_dssp             EEEECSCCGG------GCEEEEEEEE
T ss_pred             EEEECCCChh------hCEEEEEEEC
Confidence            4999999766      9999999986

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.91  E-value=3e-05  Score=43.63  Aligned_cols=24  Identities=13%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      ..|.|.++..+      |+|.|.|.+.+..
T Consensus        92 ~sL~I~~v~~~------D~G~Y~C~v~~~~  115 (135)
T 1xt5_A           92 PTLRLTHVHPQ------DGGRYWCQVAQWS  115 (135)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEECSS
T ss_pred             CeEEECCCChh------hCcEEEEEEEcCC
Confidence            57999999766      9999999999864

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.90  E-value=9e-06  Score=48.04  Aligned_cols=45  Identities=9%  Similarity=0.138  Sum_probs=31.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|..+....       ...+.+..  .      .|+|.|+|.|.|..|...+
T Consensus       119 ~p~i~W-~~~~~~l~~~~-------~~~l~~~~--~------~~~g~Y~C~a~N~~~~~~~  163 (171)
T 1ccz_A          119 DVELKL-YQGKEHLRSLR-------QKTMSYQW--T------NLRAPFKCKAVNRVSQESE  163 (171)
T ss_dssp             SCEEEE-EETTEEEEEES-------SSEEEEEC--S------CCSSCEEEEEEETTEEEEE
T ss_pred             CcEEEE-EECCEECcCCc-------ceEEEEec--c------CCCceEEEEEEcccCcccc
Confidence            378999 88998876321       12333332  2      3899999999999977553

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=1.6e-05  Score=43.87  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=30.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.+.|+
T Consensus         9 P~i~~~p-~~~~v~~G~~v~l~C~~~g~p~p~i~W~   43 (118)
T 2eo9_A            9 PVIRQGP-VNQTVAVDGTFVLSCVATGSPVPTILWR   43 (118)
T ss_dssp             CCCSBCC-CCEEEETTCEEEEECBCCCSSCCEEEEE
T ss_pred             CEEEcCC-CCEEEcCCCeEEEEEEEEecCCCEEEEE
Confidence            6665555 7788999999999999999999999997

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=97.87  E-value=1.3e-05  Score=43.38  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=26.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.+.|+
T Consensus        11 P~~~~~~-~~~~v~~G~~v~l~C~~~g~p~p~i~W~   45 (108)
T 3kvq_A           11 PTITGNL-ENQTTSIGESIEVSCTASGNPPPQIMWF   45 (108)
T ss_dssp             CCCBSCC-CCEEEETTCCEEEECBCC----CCEEEE
T ss_pred             CceecCC-CCeEEeCCCeEEEEEECcCcCCCeEEEE
Confidence            6665555 7788999999999999999999999997

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.87  E-value=1.7e-05  Score=44.94  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCc---CCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGS---PTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~---P~p~i~W~  115 (116)
                      +.|+..| ....+.+|+.+.|.|.+.|.   |.|.+.|+
T Consensus         8 ~~F~~~P-~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~   45 (126)
T 2dav_A            8 ILFIEKP-QGGTVKVGEDITFIAKVKAEDLLRKPTIKWF   45 (126)
T ss_dssp             CSCCSCC-CCCEEETTCCEEEEEEEECCCSSSCCEEEEE
T ss_pred             cEEEEcC-CCeEEeCCCCEEEEEEEeccCCCCCCcEEEe
Confidence            6677777 88899999999999999875   89999996

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.86  E-value=3.7e-05  Score=40.83  Aligned_cols=31  Identities=6%  Similarity=0.150  Sum_probs=27.5

Q ss_pred             cCCCeEEEeCCCcEEEEeeecCc-CCceeEEe
Q psy11568         85 EPPYRFEFSNESGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        85 ~~~~~~~~~~g~~~~l~C~~~g~-P~p~i~W~  115 (116)
                      .++....+.+|+++.|.|.+.|. |.|.+.|+
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~   37 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWY   37 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTTCEEEEE
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCCCEEEEE
Confidence            34478889999999999999997 99999997

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.08  E-value=2e-06  Score=51.85  Aligned_cols=71  Identities=17%  Similarity=0.071  Sum_probs=41.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC-CceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA-GVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~-g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .|.|.++..+      |+|.|.|.+.+.. .......|.|...    .... .|.+....+.      ...+.|.|.+.|
T Consensus        73 sL~I~~v~~~------DsG~Y~C~~~~~~~~fg~gT~L~V~~~----~~~~-~P~V~~~~~~------~~~vtL~C~~~g  135 (185)
T 3c6l_A           73 SLHIADSQPG------DSATYFCAASDNRIFFGDGTQLVVKPN----IQNP-EPAVYQLKDP------RSQDSTLCLFTD  135 (185)
Confidence            6999999766      9999999987621 0111123333321    0000 1333222211      127899999988


Q ss_pred             -cCCceeEEe
Q psy11568        107 -SPTPKIEWL  115 (116)
Q Consensus       107 -~P~p~i~W~  115 (116)
                       .|.|.++|.
T Consensus       136 f~P~p~v~~~  145 (185)
T 3c6l_A          136 FDSQINVPKT  145 (185)
Confidence             699999994

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.84  E-value=1.7e-05  Score=47.71  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=30.8

Q ss_pred             cEEEEEccCCeeeeccccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.+.| +++|..+..... .....    ++.|.|.++.        |+|.|+|.|.+..
T Consensus       136 ~~~~w-~k~g~~~~~~~~-~~~~~~~~~~~~L~i~~v~--------d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          136 DMYHL-SREGEAHERRLP-AGPKVNGTFQADFPLGPAT--------HGGTYRCFGSFHD  184 (201)
T ss_dssp             SEEEE-EETTCSSCEEEE-CEEEETTEEEEEEEEEECC--------SCEEEEEEEEETT
T ss_pred             ceEEE-EECCcccCcccc-cccccCCceEEEEEeCCcC--------CCeeEEEEEEcCC
Confidence            67899 888877643111 11111    3479999993        8999999998764

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.83  E-value=4.6e-05  Score=40.53  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      +.+....+....+.+|+++.|.|.+. +.|.|.++|+
T Consensus        10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~   46 (98)
T 1gl4_B           10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWT   46 (98)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEE
T ss_pred             cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEE
Confidence            44445555778899999999999998 7899999997

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=97.82  E-value=8.8e-05  Score=40.29  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=20.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.|..
T Consensus        72 ~L~I~~v~~~------DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           72 TLTISSLEPE------DFAMYICQQHNEY   94 (108)
T ss_dssp             EEEECSCCTT------CCSEEEEEECSSS
T ss_pred             EEEECCCCHH------HCEEEEEEEccCC
Confidence            6999999766      9999999999974

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.82  E-value=0.00017  Score=44.59  Aligned_cols=22  Identities=18%  Similarity=0.224  Sum_probs=19.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+.+.
T Consensus        76 sL~I~~v~~~------Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           76 VLKILAPSER------DEGSYYCACDTL   97 (229)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECC
T ss_pred             EEEECcCCHh------HCeEEEEEEecC
Confidence            6999999766      999999999876

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=97.81  E-value=5.4e-05  Score=53.92  Aligned_cols=83  Identities=19%  Similarity=0.114  Sum_probs=50.1

Q ss_pred             cEEE-EEc--cCCeeeeccccceEEee----CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCc-eEE-EEEEEEeCcEe
Q psy11568          2 YVLL-WLI--RDNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILS-RFVHVKAGSVV   72 (116)
Q Consensus         2 p~v~-W~~--~~g~~~~~~~~~~~~~~----~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~-~~~-~~~~v~~~~~~   72 (116)
                      |.|. | +  +||+.+....  .....    .+.|.|.++.+.      |+|.|+|.|.|..|. ... ..|.|..+   
T Consensus       194 p~i~~W-~~~~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~------d~g~Y~c~A~n~~G~~~s~~~~l~V~~~---  261 (731)
T 2v5y_A          194 AGDRLW-LQGIDVRDAPLKE--IKVTSSRRFIASFNVVNTTKR------DAGKYRCMIRTEGGVGISNYAELVVKEP---  261 (731)
T ss_dssp             TTCEEE-EEESSSCCEEEEE--EEECCSSEEEEEEEECSCCTT------TCEEEEEEEEETTEEEECCCEEEEEECC---
T ss_pred             CceeEE-EecCCCccccccc--eEEeccccceEEEEEcccccc------cCeEEEEEEECCCCCcceeeEEEEEecC---
Confidence            5677 7 6  7888775311  11111    247999999665      999999999999987 332 44555543   


Q ss_pred             eeeccCCCceEecCCCeEEEeCCCcEEEEeeec
Q psy11568         73 SLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQ  105 (116)
Q Consensus        73 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  105 (116)
                             |.....+ ... ......+.+.|...
T Consensus       262 -------P~~~~~p-~~~-~~~~~~v~l~w~~~  285 (731)
T 2v5y_A          262 -------PVPIAPP-QLA-SVGATYLWIQLNAN  285 (731)
T ss_dssp             -------CCBSSCC-EEE-EECSSCEEEECCCS
T ss_pred             -------CCCCCCc-cee-ccCCceEEEEeCCc
Confidence                   3221121 222 23456777777653

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=97.81  E-value=1.9e-05  Score=42.16  Aligned_cols=36  Identities=22%  Similarity=0.561  Sum_probs=29.4

Q ss_pred             CceEecC---CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEP---PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~---~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|...+   +....+..|+.+.|.|.+.|.|.|.++|+
T Consensus         5 P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~   43 (100)
T 3caf_A            5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWL   43 (100)
T ss_dssp             EEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEE
T ss_pred             CEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEE
Confidence            5554433   35677889999999999999999999997

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.80  E-value=5.6e-05  Score=46.65  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.|.++..+      |+|.|.|.+.|..+...
T Consensus       206 ~L~I~~v~~~------D~G~Y~C~a~~~~~~~~  232 (247)
T 2ghw_B          206 TLTISRLEPE------DFAVYYCQQRSNWPPTF  232 (247)
T ss_dssp             EEEECSCCGG------GCEEEEEEECSSSSCEE
T ss_pred             EEEECcCCHH------HCEEEEEEEccCCCceE
Confidence            5999999766      99999999998654433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.78  E-value=1e-05  Score=48.84  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             EEEEEccCCeeeecc-cc-ceEE-eeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          3 VLLWLIRDNTVIAYV-KD-LRIA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~-~~-~~~~-~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|+| ++||+++... .. .... ..++      .|.|.++..+      |+|.|+|.|.|...
T Consensus       144 ~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          144 SVKW-KIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYE------SHNLYTCEVVHKTS  200 (210)
T ss_dssp             EEEE-EETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEECTTC
T ss_pred             EEEE-EeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhc------cCCcEEEEEEecCC
Confidence            7999 8999987632 00 0011 1122      5888888655      99999999999854

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.77  E-value=1.7e-05  Score=48.51  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             EEEEEccCCeeeeccccc-eEE-eeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          3 VLLWLIRDNTVIAYVKDL-RIA-LSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~~~-~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|+| ++||+++...... ... ..+      ..|.|.++..+      |+|.|+|.+.|..+.
T Consensus       168 ~v~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          168 TVAW-KADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK------SHRSYSCQVTHEGST  224 (234)
T ss_dssp             EEEE-EETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTT------TSCCEEEEEEBTTBC
T ss_pred             EEEE-EECCEECCCCccccCceECCCCCEEEEEEEEECHHHcC------CCCeEEEEEEeCCCc
Confidence            7999 8899987532100 000 111      24777777544      999999999998754

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=97.77  E-value=4.1e-05  Score=44.34  Aligned_cols=36  Identities=31%  Similarity=0.718  Sum_probs=31.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+..|+++.|.|.+.|.|.|.++|+.
T Consensus        42 P~~~~~~-~~~~v~~G~~v~L~C~~~g~P~p~v~W~k   77 (154)
T 1fhg_A           42 PYFTKTI-LDMEVVEGSAARFDCKVEGYPDPEVMWFK   77 (154)
T ss_dssp             EEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred             CeEEccC-CcEEEeCCCeEEEEEEEEEecCCEEEEEE
Confidence            6666665 67889999999999999999999999973

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=97.75  E-value=8e-05  Score=39.61  Aligned_cols=35  Identities=11%  Similarity=0.150  Sum_probs=28.7

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...+ .+..+.+|+++.|.|.+.+ |.|.+.|+.
T Consensus         6 ~~~~~~~-~~~~v~~G~~v~l~C~v~~-~~~~v~W~k   40 (93)
T 1waa_A            6 IEVEKPL-YGVEVFVGETAHFEIELSE-PDVHGQWKL   40 (93)
T ss_dssp             CCEEECC-CCEEEETTSCEEEEEEESS-SSCCCEEEE
T ss_pred             cEeeccC-cceEEeCCCCEEEEEEECC-CCCeEEEEE
Confidence            5665555 8889999999999999986 558899973

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=97.73  E-value=5.6e-05  Score=40.65  Aligned_cols=35  Identities=9%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.+.|.|.+.|+
T Consensus         7 p~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~v~W~   41 (108)
T 3m45_A            7 QGQFPLT-QNVTVVEGGTAILTCRVDQNDNTSLQWS   41 (108)
T ss_dssp             -CCCEEC-CCEEEETTSCEEEEEEESSCSSCCEEEE
T ss_pred             CCccccC-CeeEEEeCCcEEEEeEEcCCCccEEEEE
Confidence            6666666 7889999999999999999999999996

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=97.73  E-value=0.00016  Score=40.39  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc-CCCceE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN-EAGVIL   60 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n-~~g~~~   60 (116)
                      .|.|.+++.+      |+|.|.|...+ ..|...
T Consensus        94 sL~I~~v~~~------D~G~Y~C~v~~~~~g~~~  121 (128)
T 3r0n_A           94 TLALHGLTVE------DEGNYTCEFATFPKGSVR  121 (128)
T ss_dssp             CEEECSCCGG------GCEEEEEEEEEETTEEEE
T ss_pred             EEEEccCCch------hCeEEEEEEEeCCCCCcc
Confidence            7999999766      99999998655 445444

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.72  E-value=7.7e-06  Score=49.35  Aligned_cols=52  Identities=17%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             cEEEEEccCCeeeecccc-ce-EEeeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYVKD-LR-IALSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~-~~-~~~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      |.++| ++||.++..... .. ....+      ..|.|..+..+      |+|.|+|.+.|..+...
T Consensus       143 ~~v~W-~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~Y~C~v~~~~~~~~  202 (211)
T 3tv3_L          143 VTVAW-KADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWK------SHRSYSCQVTHEGSTVE  202 (211)
T ss_dssp             CEEEE-EETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHH------HSSCEEEEEEETTEEEE
T ss_pred             eEEEE-EECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhC------CCCeEEEEEEECCCCEE
Confidence            68999 899998853111 00 11111      24777777544      89999999999875443

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=97.71  E-value=4.4e-05  Score=41.02  Aligned_cols=34  Identities=18%  Similarity=0.405  Sum_probs=29.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.+.|.| +.|+
T Consensus         9 p~~~~~~-~~~~v~~G~~v~l~C~~~~~p~~-v~W~   42 (103)
T 2e7b_A            9 VRFQEAL-KDLEVLEGGAATLRCVLSSVAAP-VKWC   42 (103)
T ss_dssp             CCCTBCC-CCEEEESSSCEEEEEECSSCCCS-CEEE
T ss_pred             CEEEecC-ccEEEECCCcEEEEEEEeCCCCC-eEEE
Confidence            5555554 77899999999999999999999 9997

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=97.71  E-value=1.9e-05  Score=47.81  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             EEEEEccCCeeeeccccce--EE-eeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLR--IA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~--~~-~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|+| +++|+++.......  .. ..++      .|.|..+..+      |+|.|+|.+.|...
T Consensus       147 ~v~W-~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          147 KVQW-KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYE------KHKVYACEVTHQGL  203 (216)
T ss_dssp             EEEE-EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHT------TCCEEEEEEECTTC
T ss_pred             EEEE-EECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhC------CCCcEEEEEEcCCC
Confidence            7999 89999875320000  01 1112      5778777555      99999999999863

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.70  E-value=0.00013  Score=45.56  Aligned_cols=26  Identities=15%  Similarity=0.223  Sum_probs=21.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.|.++..+      |+|.|.|.+.|.....
T Consensus       197 ~L~I~~v~~~------DsG~Y~C~a~~~~~~~  222 (256)
T 1nqb_A          197 TLKISRVEAE------DLGVYYCFQGSHVPYT  222 (256)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCE
T ss_pred             EEEECCCChH------HCEEEEEEEccCCceE
Confidence            6999999766      9999999999865433

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=97.70  E-value=3.3e-05  Score=40.15  Aligned_cols=46  Identities=13%  Similarity=0.125  Sum_probs=27.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +.|+| ++++..+...       .+.+|.|.+...+      ++|.|.|.+.+..+...+
T Consensus        18 ~~i~W-~k~~~~i~~~-------~~~tL~L~~~~~d------~sG~Y~C~~~~~~~~~~s   63 (79)
T 1xiw_B           18 TSITW-VEGTVGTLLS-------DITRLDLGKRILD------PRGIYRCNGTDIYKDKES   63 (79)
T ss_dssp             SCEEE-EEECCCEEEG-------GGTEEEEEEGGGC------CEEEEEEC--------CE
T ss_pred             CCEEE-EECCcccccc-------cCCeEEeccCcCC------CCeEEEecCCCCCCcccE
Confidence            56899 8888766421       2457888777655      899999999998875443

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=97.70  E-value=3.3e-05  Score=40.99  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.| |.+.|+.
T Consensus        10 p~~~~~~-~~~~v~~G~~v~l~C~~~g~p-p~i~W~k   44 (95)
T 2ckn_A           10 WGVPVEV-ESLLVHPGDLLQLRCRLRDDV-QSINWLR   44 (95)
T ss_dssp             CCBTTBB-CCEEECTTSCEEEECCEESSC-CEEEEEB
T ss_pred             CEEEcCc-ceEEEcCCCeEEEEEECCCCC-CceEEEE
Confidence            4444444 778899999999999999998 8999973

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.70  E-value=4.1e-05  Score=46.54  Aligned_cols=50  Identities=12%  Similarity=0.166  Sum_probs=32.8

Q ss_pred             c-EEEEEccCCeeeeccccceEEeeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      | .|+| +++|..+... .......+      +.|.|.++..+      | |.|+|.|.|..|...
T Consensus       158 p~~v~W-~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~------d-g~y~C~a~n~~~~~~  214 (222)
T 1q9r_B          158 PVTVTW-NSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWP------S-ETVTCNVAHPASSTK  214 (222)
T ss_dssp             CCEEEE-GGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTT------T-SCCEEEEEEGGGTEE
T ss_pred             CCEEEE-ecCCeEcceE-eccccccCCcEEEEEEEEECchhcC------C-CeEEEEEEccCCCCc
Confidence            5 8999 8898765321 11111122      25788877544      8 999999999987544

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=97.70  E-value=0.00021  Score=39.07  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|.|.++..+      |+|.|.|.+.+..+.
T Consensus        74 sL~I~~v~~~------DsG~Y~C~v~~~~~~   98 (116)
T 2or8_A           74 SLTIENSVES------DSGLYCCRVEIPGWF   98 (116)
T ss_dssp             CEEESSCCGG------GCEEEEEEECCSSTT
T ss_pred             EEEECCCCcc------cCEEEEEEEEcCCcc
Confidence            6999999766      999999999987543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=97.69  E-value=2.5e-05  Score=47.09  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             EEEEEccCCeeeeccccc-e-EEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL-R-IALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~-~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|+| ++||+++...... . ....++      .|.|.....+      |+|.|+|.+.|...
T Consensus       148 ~v~W-~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          148 TVDW-KVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWE------RHSSYSCQVTHEGH  203 (212)
T ss_dssp             EEEE-EETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHT------TCCEEEEEEEETTE
T ss_pred             EEEE-EECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHcc------CCCcEEEEEEeCCc
Confidence            7999 8899988632110 0 111122      4777777544      89999999999864

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.69  E-value=5e-05  Score=41.88  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         87 PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        87 ~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .....+.+|+.+.|.|.+.|.|.|.++|+
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~   59 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWT   59 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEE
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEE
Confidence            46788899999999999999999999997

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=97.69  E-value=0.00015  Score=50.37  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             cEEEEEccCCeeeeccccc-eEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCce-EEEEEEEEeCcEee
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAGSVVS   73 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~-~~~~~~v~~~~~~~   73 (116)
                      ..|+| +++++.+...... .....++      .|.|.....      .|.+.|+|.+.+..... ....+.+...    
T Consensus       377 i~v~W-~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~------~~~~~y~C~v~~~~~~~~~~~~~~~~~~----  445 (551)
T 1ntl_A          377 VQFSW-FVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDW------LNGKEFKCRVNSAAFPAPIEKTISKTKG----  445 (551)
T ss_pred             eEEEE-EECCccccccccCCceECCCCeEEEEEeeEcCHHHc------cCCceEEEEEecCCCCCCeEEEEecCCC----
Confidence            36999 8887765421110 1111222      355544422      26789999999986532 2222211110    


Q ss_pred             eeccCCCceEecCCCeEEEeCCCcEEEEeeecCc-CC-ceeEEe
Q psy11568         74 LLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS-PT-PKIEWL  115 (116)
Q Consensus        74 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~  115 (116)
                       ...+ |.+...++. .....|+.+.|.|.+.|- |. ..++|+
T Consensus       446 -~~~~-P~V~~~~~~-~~~~~~~~~~L~C~v~gfyP~~i~v~W~  486 (551)
T 1ntl_A          446 -RPKA-PQLYTIPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQ  486 (551)
T ss_pred             -CCcC-CceEEeCCC-hhhccCCceEEEEEEEEeECCCCEEEEE
Confidence             0111 544333212 223458999999999994 53 478996

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=97.68  E-value=0.00011  Score=44.65  Aligned_cols=53  Identities=9%  Similarity=0.088  Sum_probs=33.7

Q ss_pred             cEEEEEccCCeeeeccccceEE-eeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIA-LSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~-~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +.|+| +++|+++......... ..+      ..|.|.....+      |+|.|+|.+.+..+....
T Consensus       156 ~~v~W-~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~ytC~v~~~~~~~~~  215 (221)
T 3m8o_H          156 LSVTW-SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCL------AGKSVTCHVKHYTNPSQD  215 (221)
T ss_dssp             EEEEE-SCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSC------TTCEEEEEEEETTSCCEE
T ss_pred             EEEEE-EECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcC------CCCeEEEEEEECCCCcee
Confidence            37999 8998877421110011 111      24778777554      899999999998765543

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.67  E-value=7.1e-05  Score=39.75  Aligned_cols=35  Identities=14%  Similarity=0.379  Sum_probs=26.2

Q ss_pred             CceEecCCCeE--EEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRF--EFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~--~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |..+..|....  .+.+|+.+.|.|.+.+ |.|.++|+
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~   40 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWY   40 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEE
Confidence            55555554444  3457999999999966 88999997

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.66  E-value=7.5e-05  Score=40.53  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|+..++....+.+|+++.|.|.+ +.|.|.+.|+
T Consensus        16 p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~   50 (104)
T 1pd6_A           16 TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWL   50 (104)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEE
T ss_pred             CEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEE
Confidence            7777776555889999999999999 7999999997

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=4.5e-05  Score=40.90  Aligned_cols=34  Identities=6%  Similarity=0.054  Sum_probs=29.4

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.+.| |.+.|+
T Consensus         9 ~~~~~~~-~~~~v~~G~~v~l~C~~~~~~-~~v~W~   42 (101)
T 2edk_A            9 VLIVTPL-EDQQVFVGDRVEMAVEVSEEG-AQVMWM   42 (101)
T ss_dssp             CCEEECC-CCEEEESSCCCBCCEEESCSS-CCCEEE
T ss_pred             CEEEecC-CceEEcCCCCEEEEEEEeCCC-CEEEEE
Confidence            5665555 778999999999999999999 999997

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=2.2e-05  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.506  Sum_probs=29.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...| ....+.+|+++.|.|.+.|.|.|.+.|+
T Consensus        11 ~~i~~~p-~~~~v~~G~~v~l~C~~~g~p~~~v~W~   45 (96)
T 2ens_A           11 VQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWM   45 (96)
T ss_dssp             CCCEEES-TTSEECTTCEEEEECCCSSCSSCCCCCE
T ss_pred             CEEEECC-CCCEEcCCCeEEEEEEEccCCCCEEEEE
Confidence            5666666 5667889999999999999999999997

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=97.64  E-value=0.00013  Score=44.33  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=42.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEEeeecCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLDCAAQGS  107 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~  107 (116)
                      .+.|+++. +      |++.|.|.+.... ......+.|..      +..+ ......+ ....+.+|+.+.|.|.+.+.
T Consensus        53 ~~~ls~vs-~------d~~~~~C~~~c~~-~~~~~~v~l~V------y~~P-~~v~i~~-~~~~~~~G~~~tL~C~v~~~  116 (196)
T 3bn3_B           53 ARQLVDIR-E------PETQPVCFFRCAR-RTLQARGLIRT------FQRP-DRVELMP-LPPWQPVGENFTLSCRVPGA  116 (196)
T ss_dssp             EEEEEEEC-S------SEECCEEEEEETT-EEEEEECEEEE------EBCC-CCCEECC-CCSSEETTSEEEEEEEETTC
T ss_pred             EEEEEEEc-c------CCCceEEEEECCC-CceEEEEEEEE------ecCC-CcCEEcc-CCccccCCCcEEEEEEeCCc
Confidence            37888886 4      7888999976643 33333333322      1111 1122222 21236889999999999885


Q ss_pred             -CCce--eEEe
Q psy11568        108 -PTPK--IEWL  115 (116)
Q Consensus       108 -P~p~--i~W~  115 (116)
                       |...  |+|+
T Consensus       117 ~P~~~L~i~wl  127 (196)
T 3bn3_B          117 GPRASLTLTLL  127 (196)
T ss_dssp             BCGGGEEEEEE
T ss_pred             cCCCCcEEEEE
Confidence             5544  6897

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.64  E-value=0.00014  Score=45.23  Aligned_cols=26  Identities=12%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.|.++..+      |+|.|.|.+.|.....
T Consensus       221 ~L~I~~v~~~------DsG~Y~C~~~~~~~~~  246 (256)
T 3juy_B          221 TLTITRVEPE------DFALYYCQVYGASSYT  246 (256)
T ss_dssp             EEEESSCCGG------GCSEEEEEECCSSCCE
T ss_pred             EEEECCCCHh------HCEEEEEEEeeCCCce
Confidence            5999999766      9999999999965433

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.62  E-value=3e-05  Score=43.43  Aligned_cols=35  Identities=17%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCc---CCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGS---PTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~---P~p~i~W~  115 (116)
                      +.|+..| .+..+.+|+.+.|.|.+.|.   |.|.+.|+
T Consensus        13 ~~f~~~P-~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~   50 (118)
T 2edn_A           13 GVFLKKP-DSVSVETGKDAVVVAKVNGKELPDKPTIKWF   50 (118)
T ss_dssp             SSCSBCC-CCCEEETTSCEECCEEEETTTSSSCCCCEEE
T ss_pred             ceEEECC-CCeEEeCCCCEEEEEEEeccCCCCCCcEEEe
Confidence            5666666 88899999999999999885   79999996

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.62  E-value=7.8e-05  Score=40.28  Aligned_cols=34  Identities=6%  Similarity=0.130  Sum_probs=29.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.+.|.| +.|+
T Consensus         9 p~~~~~~-~~~~v~~G~~v~l~C~~~~~~~~-v~W~   42 (106)
T 2dlt_A            9 LEVLQDI-ADLTVKAAEQAVFKCEVSDEKVT-GKWY   42 (106)
T ss_dssp             CCEEECC-CCEEEESSCCEECCCEESCSSCE-EEEE
T ss_pred             CEEecCC-CCeEEeCCCeEEEEEEEcCCCcc-eEEE
Confidence            6666665 78899999999999999999988 9997

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=97.61  E-value=9.3e-05  Score=39.19  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +.|...+ ....+.+|+++.|.|.+ +.|.|.+.|+.
T Consensus         9 ~~~~~~~-~~~~v~~G~~v~l~C~~-~~p~~~v~W~k   43 (95)
T 2k1m_A            9 SAFSKKP-RSVEVAAGSPAVFEAET-ERAGVKVRWQR   43 (95)
T ss_dssp             CCCSBCC-CCEEEETTSCEEEEEEC-SSSSCCCEEEC
T ss_pred             CeeEeCC-CcEEEeCCCcEEEEEEe-CCCCCeEEEEE
Confidence            4555555 78899999999999999 88999999974

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.60  E-value=0.00011  Score=44.96  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.|..
T Consensus       200 ~L~I~~v~~~------D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          200 SLHIADSQPG------DSATYFCAAIDTN  222 (238)
T ss_dssp             EEEETTCCGG------GCEEEEEEEEETT
T ss_pred             EEEEcCCCHH------HCEEEEEEEeeCC
Confidence            7999999766      9999999999984

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.60  E-value=0.00017  Score=44.84  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVK   67 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~   67 (116)
                      .|.|.++..+      |+|.|.|.+.|..+....  ..|.|.
T Consensus       209 ~L~I~~v~~~------D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          209 SLTISSLESE------DFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             EEEECSCCGG------GCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCChh------HCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            5999999766      999999999997654442  344444

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.60  E-value=6.9e-05  Score=46.25  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|.|.....+      |.|.|+|.+.|..+.
T Consensus       189 ~L~i~~~~~~------d~g~YtC~a~n~~~~  213 (248)
T 3pv7_A          189 CLKLNSSQED------PGTVYQCVVRHASLH  213 (248)
T ss_dssp             EEECC--CCC------TTCEEEEEEECTTCS
T ss_pred             EEEEcCcccc------CCCEEEEEEECCCCC
Confidence            4666666444      899999999999765

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.59  E-value=8.5e-05  Score=46.30  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.|..
T Consensus       210 ~L~I~~v~~~------D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          210 TLTISSLQPE------DVATYFCYQYNNG  232 (257)
T ss_dssp             EEEECSCCGG------GCSEEEEEEESSS
T ss_pred             EEEECCCChh------hCEEEEEEEeCCC
Confidence            6999999766      9999999999975

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=97.58  E-value=0.00042  Score=37.95  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=20.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +|.|.++..+      |+|.|.|...+...
T Consensus        75 sL~I~~v~~~------DsG~Y~C~v~~~~~   98 (115)
T 2or7_A           75 SLTIENTVVG------DGGPYCCVVEIPGA   98 (115)
T ss_dssp             CEEESSCCGG------GCEEEEEEECCTTS
T ss_pred             EEEEccCCHH------HCEEEEEEEECCCc
Confidence            6999999766      99999999987643

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=97.58  E-value=1.9e-05  Score=47.68  Aligned_cols=51  Identities=14%  Similarity=0.207  Sum_probs=29.0

Q ss_pred             EEEEEccCCeeeeccccc-eEEeeCC------eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          3 VLLWLIRDNTVIAYVKDL-RIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~~~~~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|+| ++||.++...... .....++      .|.|.....+      |+|.|+|.|.|..+...
T Consensus       154 ~v~W-~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~------d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          154 TVAW-KANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWR------SHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             EEEE-EETTEEC--------------CEEEEEEEEEEHHHHH------TCSCEEEEEEETTEEEE
T ss_pred             EEEE-EECCEECcCceecCcccccCCcEEEEEEEEEeHHHcc------CCCeEEEEEEeCCCccc
Confidence            7999 8899988641111 1111122      3556655333      79999999999976443

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=7.9e-05  Score=40.36  Aligned_cols=36  Identities=8%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~~  116 (116)
                      +.|...+ .+..+.+|+++.|.|.+.+.|. +.+.|+.
T Consensus         9 ~~~~~~~-~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k   45 (104)
T 2eny_A            9 VGITKRL-KTMEVLEGESCSFECVLSHESASDPAMWTV   45 (104)
T ss_dssp             CCCSBCC-CCEEEESSCCEEEEEECSSCCCSSCBCCBS
T ss_pred             CEEEecC-CCcEEcCCCcEEEEEEEcCCCCCceeEEEE
Confidence            4454444 7889999999999999999885 4899973

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=97.55  E-value=0.00018  Score=39.73  Aligned_cols=26  Identities=15%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .+|.|.++..+      |+|.|.|.+.+..+.
T Consensus        81 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~  106 (124)
T 1neu_A           81 GSIVIHNLDYS------DNGTFTCDVKNPPDI  106 (124)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEC----
T ss_pred             EEEEEccCChh------hCEEEEEEEEcCCCC
Confidence            47999999766      999999999988654

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=97.55  E-value=0.00026  Score=42.96  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC---Cc-eE--EEEEEEEeCcEeeeeccCCCceEecCCCeEEEeCCCcEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA---GV-IL--SRFVHVKAGSVVSLLDIQGPLFRIEPPYRFEFSNESGGRLD  101 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~---g~-~~--~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  101 (116)
                      .|.|.++..+      |+|.|.|.+.+..   +. ..  ...|.|....    .. +.|.+....+.      ...+.|.
T Consensus        73 sL~I~~v~~~------Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~----~~-~~P~V~~~~~~------~~~~~L~  135 (203)
T 2bnu_A           73 TLYIAASQPG------DSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYI----QN-PDPAVYQLRRS------KSSDKSV  135 (203)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEECSSSTTCCEECCCEEEEEECCC----SS-CCCEEEEECCS------SSSSCEE
T ss_pred             EEEEeeCCcc------cCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCC----CC-CCCeEEecCCC------CCCcEEE
Confidence            6999999766      9999999998742   11 11  1344444310    00 11443222211      2478999


Q ss_pred             eeecC-cCCcee
Q psy11568        102 CAAQG-SPTPKI  112 (116)
Q Consensus       102 C~~~g-~P~p~i  112 (116)
                      |.+.| .|.|.+
T Consensus       136 C~~~g~~P~p~v  147 (203)
T 2bnu_A          136 CLFTDFDSQTNV  147 (203)
T ss_dssp             EEEESCCTTCCC
T ss_pred             EEccccccCccc
Confidence            99999 788754

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.54  E-value=0.00011  Score=39.47  Aligned_cols=34  Identities=12%  Similarity=0.134  Sum_probs=28.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...+ ....+.+|+++.|.|.+.+ |.|.+.|+
T Consensus         9 p~~~~~~-~~~~v~~G~~v~l~C~~~~-~~~~v~W~   42 (103)
T 2edf_A            9 AAIIKPL-EDQWVAPGEDVELRCELSR-AGTPVHWL   42 (103)
T ss_dssp             CCEEECC-CCEEECTTSCEEECCEESS-SSCCCCEE
T ss_pred             cEEEecC-CccEEcCCCCEEEEEEEeC-CCCcEEEE
Confidence            5555555 7789999999999999998 88899997

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.53  E-value=7.7e-05  Score=39.02  Aligned_cols=27  Identities=19%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+..+.+|+.+.|.|.+.+ |.|.+.|+
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~   30 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWY   30 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEE
Confidence            5677889999999999976 99999997

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.53  E-value=0.0002  Score=45.34  Aligned_cols=26  Identities=15%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.|.++..+      |+|.|.|.+.|..+..
T Consensus       232 ~L~I~~v~~~------DsG~Y~C~a~~~~~~~  257 (282)
T 1qok_A          232 SLTISRMEAE------DAATYYCQQRSSYPLT  257 (282)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSSSCE
T ss_pred             EEEEccCChh------HCEEEEEEEeeCCCce
Confidence            6999999766      9999999999865433

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=97.53  E-value=0.00025  Score=38.42  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=25.9

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+.+|+++.|.|.+.+.|.|.+.|+
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~~~~~v~W~   36 (108)
T 1jhl_L            9 SYLVASPGETITINCRASKSISKSLAWY   36 (108)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred             CeeEEcCCCCEEEEeEECCCCCceEEEE
Confidence            6788899999999999999999999997

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=97.52  E-value=0.00019  Score=38.30  Aligned_cols=36  Identities=11%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...+.....+.+|+++.|.|.+. .|.|.+.|+.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k   43 (100)
T 2yuv_A            8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYK   43 (100)
T ss_dssp             CCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEE
T ss_pred             CeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEE
Confidence            77776663446788999999999998 7999999973

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=97.51  E-value=0.00028  Score=45.39  Aligned_cols=71  Identities=10%  Similarity=0.033  Sum_probs=41.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEEEEEeCcEeeeeccCCCceE-ecCCCeEEEeCCCcEEEEeeecC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAGSVVSLLDIQGPLFR-IEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .+.|+++.        +.|.|+|.+.. .|......+.+...      ..  |.-. ..+ ....+.+|+.+.|.|.+.|
T Consensus        51 ~~~l~~v~--------~~~~y~C~~~~-~~~~~~~~v~l~V~------~~--P~~v~I~~-~~~~~~~G~~~~LtC~v~g  112 (291)
T 1mq8_A           51 VYELSNVQ--------EDSQPMCYSNC-PDGQSTAKTFLTVY------WT--PERVELAP-LPSWQPVGKNLTLRCQVEG  112 (291)
T ss_dssp             EEEEESCC--------SCCCCEEEEEC-SSCEEEEECEEEEC------BC--CSCCCBCC-CCSBCCSSCCCEEEEEECC
T ss_pred             EEEEEecc--------cCCeEEEEEEc-CCccEEEEEEEEEe------cC--CCCCEEec-CCccccCCCCEEEEEEecC
Confidence            36788885        23579999864 33444433333321      11  2111 111 2223678999999999988


Q ss_pred             cCC-c--eeEEeC
Q psy11568        107 SPT-P--KIEWLI  116 (116)
Q Consensus       107 ~P~-p--~i~W~~  116 (116)
                      .++ +  .|+|+.
T Consensus       113 ~~P~~~l~itW~k  125 (291)
T 1mq8_A          113 GAPRANLTVVLLR  125 (291)
T ss_dssp             CBSTTTEEEEEES
T ss_pred             ccCCCCcEEEEEE
Confidence            643 3  589973

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.51  E-value=7.2e-05  Score=40.22  Aligned_cols=35  Identities=20%  Similarity=0.503  Sum_probs=28.6

Q ss_pred             CceEecCCCe--EEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYR--FEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~--~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.++..+...  ..+.+|+++.|.|.+.+.|.| +.|+
T Consensus         8 P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~   44 (104)
T 2e6p_A            8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWY   44 (104)
T ss_dssp             SCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEE
T ss_pred             CCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEe
Confidence            6666665222  788999999999999999999 9997

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.50  E-value=7.9e-05  Score=45.14  Aligned_cols=51  Identities=14%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             c-EEEEEccCCeeeeccccceEEe-----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~-----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      | .|+| +++|..+..........     ..+.|.|.... .      |.|.|+|.|.|..+...
T Consensus       155 p~~v~W-~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~------d~g~Y~C~a~n~~~~~~  211 (219)
T 1c1e_H          155 PVTVTW-NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-R------PSETVTCNVAHPASSTK  211 (219)
T ss_dssp             CCEEEE-GGGTBCTTEEECCCEESSSCEEEEEEEEEESSS-T------TTSCCEEEEEEGGGTEE
T ss_pred             CeEEEE-EeCCcccceEecCCcccCCeEEEEEEEEEeccc-C------CCCEEEEEEEeCCCCcc
Confidence            5 8999 99987642111111111     11257773332 1      56999999999876543

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.50  E-value=0.00025  Score=38.53  Aligned_cols=46  Identities=22%  Similarity=0.358  Sum_probs=0.0

Q ss_pred             cEEEEEccCC------eeeeccccceEEeeCC----eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568          2 YVLLWLIRDN------TVIAYVKDLRIALSNG----SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus         2 p~v~W~~~~g------~~~~~~~~~~~~~~~~----~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      +.|.| +++.      ..+....+........    .|.|.++..+      |+|.|.|.+.+
T Consensus        32 ~~v~W-~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~~~~   87 (108)
T 2coq_A           32 DSTNW-YRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVE------DSGTYKCKAYR   87 (108)
T ss_dssp             EEEEE-EEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEEEE
T ss_pred             CEEEE-EEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcc------cCEEEEEEEEe

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=97.49  E-value=0.0003  Score=38.47  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+.+
T Consensus        67 ~L~I~~v~~~------DsG~Y~C~~~~   87 (111)
T 2ywz_A           67 SLRISDLRVE------DSGTYKCQADY   87 (111)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEE
T ss_pred             EEEECCCChh------cCEEEEEEEEc
Confidence            6999999766      99999999998

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.49  E-value=9.9e-05  Score=39.65  Aligned_cols=32  Identities=9%  Similarity=0.210  Sum_probs=26.9

Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +...+ ....+.+|+++.|.|.+.+ |.|.+.|+
T Consensus        10 ~~~~~-~~~~v~~G~~v~l~C~~~~-~~~~v~W~   41 (103)
T 1x44_A           10 VTKQL-EDTTAYCGERVELECEVSE-DDANVKWF   41 (103)
T ss_dssp             CSBCC-CCEEEETTEEEEEEEECSS-SSCCCEEE
T ss_pred             eeccC-CCEEEECCCCEEEEEEecC-CCCeEEEE
Confidence            44444 7788999999999999988 77999997

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=97.49  E-value=0.0003  Score=38.27  Aligned_cols=22  Identities=9%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+.+.
T Consensus        74 ~L~I~~v~~~------DsG~Y~C~~~~~   95 (109)
T 2q20_A           74 TFTISSLQPE------DIATYYCQQYDN   95 (109)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             EEEECCCChh------hCEEEEEEEeeC
Confidence            6999999766      999999999885

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.48  E-value=0.00022  Score=39.43  Aligned_cols=34  Identities=3%  Similarity=0.029  Sum_probs=28.7

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +.|...+ .+..+.+|+.+.|.|.+.+  .|.+.|++
T Consensus         9 ~~~~~~l-~d~~v~eG~~a~f~C~vs~--~p~v~W~k   42 (112)
T 2e6q_A            9 ARLVAGL-EDVQVYDGEDAVFSLDLST--IIQGTWFL   42 (112)
T ss_dssp             CCEEECC-CCEEEETTCEEEEEEEESS--CCCCEEEE
T ss_pred             cEEecCC-CCeEEcCCCcEEEEEEECC--CCeEEEEE
Confidence            5565555 8899999999999999998  77899973

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=97.47  E-value=4.8e-05  Score=45.82  Aligned_cols=48  Identities=10%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             cEEEEEccCCeeeeccc--cceEEe-eCC------eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVK--DLRIAL-SNG------SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~--~~~~~~-~~~------~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +.|+| +++|.++....  ...... .++      .|.|.....+      |+|.|+|.+.|..
T Consensus       144 ~~v~W-~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~------d~g~YtC~v~n~~  200 (213)
T 3r06_A          144 INVKW-KVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYE------RHNLYTCEVTHKT  200 (213)
T ss_dssp             EEEEE-EETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEEETT
T ss_pred             eEEEE-EECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhc------cCCeEEEEEEecc
Confidence            38999 99999886321  101111 122      3556666433      7999999999985

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=97.45  E-value=0.00039  Score=37.26  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCc--CCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGS--PTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~--P~p~i~W~  115 (116)
                      |.+...+ ....+..|+++.|.|.+.+.  |.|.+.|+
T Consensus        11 P~i~~~p-~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~   47 (112)
T 3so5_A           11 PQITVQP-ETQSAIXGSDVSFTCSAASSSDSPMTFAWX   47 (112)
T ss_dssp             CEEEECC-CCEEECTTCCEEEEEEEEESCCCCCEEEEE
T ss_pred             CeEEeCC-CCcEEECCCCEEEEEEEecCCCCCEEEEEc
Confidence            6676666 67789999999999999955  46899996

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=97.45  E-value=0.00031  Score=39.03  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.+..
T Consensus        72 ~L~I~~v~~~------DsG~Y~C~~~~~~   94 (120)
T 1mqk_L           72 SLKINSLLPE------DFGSYYCQHHYGT   94 (120)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSS
T ss_pred             EEEECCCCHH------HCEEEEEEEEeCC
Confidence            6999999766      9999999998864

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=97.44  E-value=3e-05  Score=47.42  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=25.6

Q ss_pred             EEEEEccCCeeeecc-ccce-E-EeeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYV-KDLR-I-ALSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~-~~~~-~-~~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.++... .... . ...+      ..|.|.....+      |+|.|+|.+.|..
T Consensus       167 ~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~  222 (233)
T 3bqu_C          167 NVKW-KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKT  222 (233)
T ss_dssp             EEEE-EEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCCEEEEEEEC-
T ss_pred             EEEE-EECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhC------CCCCEEEEEEeCC
Confidence            6999 8899877532 0000 0 0111      24677777544      8999999999974

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.44  E-value=0.00012  Score=39.36  Aligned_cols=33  Identities=12%  Similarity=-0.000  Sum_probs=28.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|...+ .+..+.+|+++.|.|.+  .|.|.+.|+
T Consensus         8 ~~~~~~~-~~~~v~~G~~v~l~C~v--~p~p~v~W~   40 (100)
T 2yuz_A            8 LKILTPL-TDQTVNLGKEICLKCEI--SENIPGKWT   40 (100)
T ss_dssp             CCCSBCC-CCEEEETTSCCCEEEEC--SSCCCEEEE
T ss_pred             CEEeccC-CceEEcCCCCEEEEEEe--CCCCeEEEE
Confidence            5555554 88899999999999999  899999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.002

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
              Y+C A   AGV  SR +  +
Sbjct: 69 DEGHYQCFAETPAGVASSRVISFR 92

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 44 HSTVYRCRASNEAGVILSRFVHVK 67
           +  Y C+  +     +S+ V + 
Sbjct: 65 DAGRYWCQVEDGGETEISQPVWLT 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.39
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.35
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.33
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.3
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.3
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.28
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.28
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.27
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.26
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.26
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.24
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.24
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.23
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.22
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.21
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.21
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.2
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.19
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.18
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.18
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.17
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.13
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.12
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.09
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.09
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.08
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.08
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.06
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.04
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.99
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.98
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.98
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.98
d2avga1	110	Cardiac myosin binding protein C, different domain	98.94
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.93
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.93
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.93
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.92
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.91
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.91
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.88
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.88
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.84
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.84
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.76
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.68
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.67
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.66
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.63
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.63
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.62
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.54
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.53
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.49
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.49
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.49
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.45
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.42
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.39
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.38
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.34
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.33
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.31
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.3
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.27
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.22
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.21
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.17
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.17
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.12
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.12
d2avga1	110	Cardiac myosin binding protein C, different domain	98.12
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.06
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.06
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.03
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.01
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.98
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.98
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.98
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	97.97
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.96
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.95
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.95
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.94
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.9
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.89
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.82
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.8
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.78
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.75
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.74
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.69
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.69
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.64
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.53
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.52
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.48
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.47
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.46
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.35
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.35
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	97.34
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.18
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.14
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.13
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.09
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.05
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	96.98
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	96.9
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.85
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	96.84
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.78
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.77
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	96.76
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	96.74
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.67
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	96.65
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	96.57
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.55
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.53
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.42
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.34
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.16
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.15
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.07
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.04
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	96.04
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	95.98
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.89
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	95.83
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	95.81
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.81
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	95.74
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	95.72
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	95.67
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	95.67
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	95.64
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	95.61
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	95.61
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	95.61
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	95.58
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.54
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	95.5
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	95.42
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	95.41
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	95.41
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	95.36
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	95.31
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	95.31
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.3
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.27
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.27
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	95.25
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	95.23
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	95.16
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	95.15
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.14
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	95.13
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	95.1
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.05
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.97
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	94.96
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.95
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	94.94
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	94.93
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	94.89
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	94.87
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	94.86
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	94.83
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	94.81
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	94.81
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	94.8
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	94.74
d8faba1	103	Immunoglobulin light chain lambda variable domain,	94.69
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.69
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	94.67
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	94.64
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	94.64
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	94.63
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	94.63
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	94.59
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	94.55
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.53
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	94.48
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	94.46
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	94.46
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	94.46
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	94.44
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	94.44
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	94.35
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	94.3
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	94.3
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	94.29
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.28
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	94.28
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	94.19
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	94.13
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	94.11
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	94.11
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	94.04
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	93.98
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	93.95
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	93.93
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	93.89
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	93.86
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	93.82
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	93.77
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	93.76
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	93.74
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.66
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	93.62
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	93.56
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	93.55
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	93.54
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	93.51
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.49
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	93.45
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	93.43
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	93.41
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	93.41
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.36
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.26
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	93.26
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	93.23
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	93.21
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	93.21
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	93.12
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	93.1
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	93.08
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	92.82
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	92.7
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	92.66
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	92.54
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	92.41
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	92.37
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	92.37
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	92.32
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	92.29
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	92.18
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	92.08
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	92.08
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	92.03
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	91.99
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	91.94
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	91.93
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	91.64
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	91.49
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	91.46
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	91.39
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	91.16
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	90.93
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	90.84
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	90.78
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	90.66
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	90.61
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	89.96
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	89.95
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	89.88
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	89.2
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	88.8
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	88.5
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	88.37
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	87.78
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	87.25
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	86.71
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	86.46
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	86.28
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	86.18
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	86.16
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	85.77
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	85.3
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	85.27
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	85.23
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	85.07
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	84.98
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	84.82
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	84.8
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	84.49
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	84.39
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	84.39
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	84.38
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	84.3
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	84.29
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	84.17
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	84.09
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	83.84
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	83.75
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	83.71
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	83.7
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	83.69
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	83.59
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	83.55
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	83.53
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	83.47
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	83.44
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	83.33
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	83.29
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	83.27
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	83.11
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	83.01
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	82.94
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	82.77
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	82.64
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	82.38
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	82.19
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	82.13
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	82.02
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	81.99
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	81.97
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	81.88
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	81.74
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	81.54
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	81.48
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	81.44
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	81.2
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	81.18
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	81.17
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	81.1
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	80.76
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	80.69
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	80.54
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	80.51
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	80.31
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	80.27
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	80.17
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	80.17
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	80.17
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	80.01

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=2.5e-13  Score=71.74  Aligned_cols=58  Identities=29%  Similarity=0.511  Sum_probs=46.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||.++..  ..++...++.|.|.++..+      |+|.|+|.|.|..|...+ ..|.|.
T Consensus        30 ~p~v~W-~k~g~~i~~--~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          30 RPAVRW-LRDGQPLAS--QNRIEVSGGELRFSKLVLE------DSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             CCEEEE-EETTEECCC--CSSEEEETTEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEE-EEeeccccc--cceeeeeeeeEEEEeeccc------CCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            478999 899998874  3356667889999999766      999999999999998774 555554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.39  E-value=8.2e-13  Score=69.65  Aligned_cols=51  Identities=20%  Similarity=0.364  Sum_probs=42.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|+| ++||.++.   ..+....++.|.|.++..+      |+|.|+|.|.|..|....
T Consensus        32 ~p~v~W-~~~~~~i~---~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~   82 (89)
T d1biha4          32 APNVVW-SHNAKPLS---GGRATVTDSGLVIKGVKNG------DKGYYGCRATNEHGDKYF   82 (89)
T ss_dssp             CCCCEE-EETTEECC---SSSEEEETTEEEESSCCST------TCEEEEEEEEETTEEEEE
T ss_pred             CCEEEE-EeCCccCc---cccEEEeeeeEEECCCChh------hCEEEEEEEEECCCEEEE
Confidence            478999 89999886   3345566778999999766      999999999999997764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.35  E-value=3.6e-12  Score=68.67  Aligned_cols=60  Identities=20%  Similarity=0.382  Sum_probs=45.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEee-CC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALS-NG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~-~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||.++....+.+.... ++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|.
T Consensus        37 ~p~v~W-~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          37 DPEVMW-FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD------DDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEEECTTCEEEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEE-EeeeccccceeeEeEEEecCceeeeEecCCCHH------hCEEEEEEEEECCcEEEEEEEEEEE
Confidence            479999 999999976544444333 22  6999999766      999999999999998774 555554

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.33  E-value=5e-12  Score=67.64  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             CcEEEEEccCCeeeeccccceEE-eeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~-~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||.++....+.... ..++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|.
T Consensus        33 ~p~v~W-~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          33 DPECEW-YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE------DSASIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEE-EeCceEEeeeeeeEEEeccceEEEEEeccCccc------cCEEEEEEEEECCcEEEEEEEEEEE
Confidence            478999 9999999754433322 2344  6999999766      999999999999998875 555554

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.4e-12  Score=67.09  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=46.2

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.| ++||+++....+.+.....+  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        29 ~p~v~W-~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          29 PITCTW-MKFRKQIQESEHMKVENSENGSKLTILAARQE------HCGCYTLLVENKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             SCEEEE-EESSSBCCCSSSEEEEECSSEEEEEETTCCTT------TCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             CCEEEE-EeCceeeccCCcEEEEEecceeEEEEeeCCcc------cCEEEEEEEEECCCEEEEEEEEEEEe
Confidence            378999 89999887554444443333  6999999766      999999999999998774 5566654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.30  E-value=5e-12  Score=66.98  Aligned_cols=59  Identities=22%  Similarity=0.261  Sum_probs=44.4

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.++| ++||..+............+  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|
T Consensus        31 ~p~v~W-~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          31 DPTATW-TVGDSGAALAPELLVDAKSSTTSIFFPSAKRA------DSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             SCEEEE-ECSSSSCBCSTTSEEEEETTEEEEECTTBCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEE-Eeeeeeceeeeeeeecccccceeecccccccc------ccEEEEEEEEECCCEEEEEEEEEE
Confidence            378999 88998887544444444433  6999999766      999999999999998774 44444

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.30  E-value=6e-12  Score=67.22  Aligned_cols=58  Identities=17%  Similarity=0.313  Sum_probs=43.2

Q ss_pred             CcEEEEEccCCeeeeccccc-e--EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDL-R--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~-~--~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.|.| ++||+++....+. .  .....+.|.|.++..+      |+|.|+|.|.|..|.... ..|.
T Consensus        34 ~p~i~W-~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~   95 (97)
T d3dara1          34 MPTMRW-LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSINHTYHLD   95 (97)
T ss_dssp             CCEEEE-EETTEECCGGGSTTCCEEEGGGTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCEEEE-EECCEeccccCceeeEEEcCCcEEEEECCCCcc------cCEEEEEEEEECCCEEEEEEEEE
Confidence            488999 9999998753322 1  2233458999999766      999999999999998664 4443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=7.4e-12  Score=66.69  Aligned_cols=54  Identities=19%  Similarity=0.357  Sum_probs=42.7

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .+.++| +++|+.+...........++.|.|.++.++      |+|.|+|.|.|..|...+
T Consensus        31 ~~~v~W-~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~g~~~S   84 (96)
T d1l6za2          31 GANIQW-LFNSQSLQLTERMTLSQNNSILRIDPIKRE------DAGEYQCEISNPVSVRRS   84 (96)
T ss_dssp             SCEEEE-EETTEECCCCTTEEEETTTTEEEECSCCGG------GCEEEEEEEESSSCCEEC
T ss_pred             CCCEEE-EEeeeecccccceeccCCceEEEEeccchh------hceEEEEEEEeCCCCeEE
Confidence            368999 899999875444444444568999999766      999999999999987765

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.28  E-value=4.7e-12  Score=67.60  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||+++....+......++  .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|.
T Consensus        30 ~p~v~W-~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~   92 (97)
T d1koaa1          30 PPVVTW-HKDDRELKQSVKYMKRYNGNDYGLTINRVKGD------DKGEYTVRAKNSYGTKEEIVFLNVT   92 (97)
T ss_dssp             CCEEEE-EETTEECCSBTTBBCCCSTTEEEEEESCCCSG------GGSCEEEEEEETTEEEEEEECCEEE
T ss_pred             CCEEEE-EEeeeccceeeEEEEEecCCeeEEEeCCCcee------cCEEEEEEEEECCCEEEEEEEEEEe
Confidence            378999 89999987543333333333  6999999766      999999999999998764 445444

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=6.3e-12  Score=66.01  Aligned_cols=55  Identities=25%  Similarity=0.314  Sum_probs=42.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      |.|.| +++|..+..   .+....++.|.|.++..+      |+|.|+|.|.|..|...+ ..|.|
T Consensus        33 ~~v~W-~k~~~~~~~---~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          33 YTLVW-TRLHNGKLP---SRAMDFNGILTIRNVQPS------DAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             CEEEE-EEGGGBCCC---TTEEEETTEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CEEEE-ecCCceeec---cccEeeceEEEEecCCcc------cCEEEEEEEEECCCEEEEEEEEEE
Confidence            78999 777766542   234556789999999766      999999999999997764 44443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.26  E-value=2.9e-12  Score=68.01  Aligned_cols=56  Identities=25%  Similarity=0.407  Sum_probs=42.1

Q ss_pred             cEEEEEccCCeeeeccccc-eEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV   64 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~~   64 (116)
                      +.+.| ++||+++...... .....+++|.|.++..+      |+|.|+|.|.|..|...+..+
T Consensus        33 ~~v~W-~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~s~~v   89 (94)
T d1biha1          33 VKYSW-KKDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQCFAETPAGVASSRVI   89 (94)
T ss_dssp             CEEEE-EESSSBCCTTTTTEEECTTSCCEEESSCCGG------GCEEEEEEEEETTEEEECCCE
T ss_pred             eEEEE-EeeeeeeeeecceeeecccceEEEEeccChh------cCeEEEEEEEeCCCEEEEEEE
Confidence            36999 8999988653322 23334568999999766      999999999999997665433

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-11  Score=67.41  Aligned_cols=60  Identities=15%  Similarity=0.156  Sum_probs=42.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC---------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN---------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~---------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      +|.|+| ++||+++............         ..|.|.++..+      |+|.|+|.|.|.+|...+ ..|.|.
T Consensus        29 ~P~v~W-~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~A~N~~G~~~~~i~v~v~   98 (107)
T d1he7a_          29 APSLRW-LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV------NNGNYTLLAANPFGQASASIMAAFM   98 (107)
T ss_dssp             CCEEEE-EETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGG------GCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCeEEE-EEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHH------HCcEEEEEEEeCCCEEEEEEEEEEE
Confidence            489999 9999998753333322211         24899999766      999999999999998764 444443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.24  E-value=5.4e-12  Score=66.63  Aligned_cols=58  Identities=10%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.|.| ++||.++......+.....  +.|.|.++..+      |+|.|+|.|.|..|...+ ..|.
T Consensus        28 ~p~v~W-~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~   88 (91)
T d1tnna_          28 VPTVTW-LRKGQVLSTSARHQVTTTKYKSTFEISSVQAS------DEGNYSVVVENSEGKQEAEFTLT   88 (91)
T ss_dssp             CCCCEE-ESSSSTTCSSSSCEEEECSSEEEEECSSCCSC------CCEEEEEECBCSSCBCCEEEEEE
T ss_pred             CCeEEE-EEeecccccccceeeeeecceeEEeecCCCHH------HCEEEEEEEEECCCEEEEEEEEE
Confidence            378999 8999888754443333332  37999999766      999999999999998764 4343

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.8e-11  Score=65.44  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=42.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEe-eC-----CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL-SN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~-~~-----~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+| ++||+++.......... .+     ..|.|.++..+      |+|.|+|.|.|..|...+ ..|.|
T Consensus        31 ~P~v~W-~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          31 PPTLHW-LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY------NNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             CCEEEE-EETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGG------GCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCeEEE-EeCccccCCCcceeeeEEeecccceEEEEEeecccc------cceEEEEEEEcCCCEEEEEEEEEE
Confidence            489999 99999987543333221 11     25899999766      999999999999997764 44433

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.4e-11  Score=66.53  Aligned_cols=51  Identities=20%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      .|.|+| ++||+++.. .+.+....++.|.|.++..+      |+|.|+|.|.|..|..
T Consensus        34 ~P~i~W-~kdg~~l~~-~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          34 LPKLQW-YKDCKPLLL-DNIHFSGVKDRLIVMNVAEK------HRGNYTCHASYTYLGK   84 (103)
T ss_dssp             CCCCEE-EETTEECCC-CSSSEEEETTEEEESSCCGG------GCEEEEEEEEEEETTE
T ss_pred             CCEEEE-EECCccccC-CCcEEEecCCEEEEcccccc------cCcEEEEEEEECcCCE
Confidence            378999 999999874 23345667789999999766      9999999999987543

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=5e-12  Score=67.49  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=41.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC-eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~-~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      .|.++| ++||.++....+.+....++ .|.|..+..+      |+|.|+|.|.|..|.+.+.
T Consensus        36 ~p~v~W-~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~a~N~~G~~~S~   91 (97)
T d1cs6a1          36 PATYRW-KMNGTELKMGPDSRYRLVAGDLVISNPVKAK------DAGSYQCVATNARGTVVSR   91 (97)
T ss_dssp             CCEEEE-EETTEECCCSTTSSEEEETTEEEEESCCHHH------HCEEEEEEEEETTEEEECC
T ss_pred             CCEEEE-EEeeeeccCCCCceEEeeeeeEEEEeccccc------CCEEEEEEEEECCCEEEEE
Confidence            489999 99999987544444444444 5666777555      9999999999999987653

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.23  E-value=1.9e-11  Score=65.21  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=40.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEe----eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIAL----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~----~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|.| +++|+++......+...    ....|.|.++.++      |+|.|+|.|.|..|...+
T Consensus        32 ~~~v~W-~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          32 MGYPNY-FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE------DEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCCCEE-EETTEECCCCTTSSEESCSSSTTSEEEESSCCGG------GCEEEEEEECCSSSSCEE
T ss_pred             CCEEEE-EEeeeeccccceeeeeeeeecCCCEEEEEecccc------ccEEEEEEEEECCCcEEE
Confidence            378999 89999986543333321    2337999999766      999999999999998664

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.7e-11  Score=63.78  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=40.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC----eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~----~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|.| ++||.++.............    .|.|.++.++      |+|.|+|.|.|..|...+
T Consensus        25 ~p~v~W-~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1          25 EPDIQW-VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS------DAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             SCCEEE-EETTEECCSSEEEEEEEETTEEEEEEEESSCCGG------GCEEEEEEESSCTTCEEC
T ss_pred             CceEEE-EEeecccccceeeeeeecccCceeeEEECCCCcc------cCEEEEEEEEECCCCEEE
Confidence            378999 99999986543333333332    5899999766      999999999999997654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.21  E-value=3.7e-11  Score=63.32  Aligned_cols=56  Identities=14%  Similarity=0.127  Sum_probs=39.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++++.....    .....++.|.|.++..+      |+|.|+|.|.|..|.... ..|.|.
T Consensus        34 ~p~i~W-~k~~~~~~~----~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          34 VPQIKW-RKLDGSQTS----KWLSSEPLLHIQNVDFE------DEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             CCEEEE-EECCSCCSC----CCSBSSSEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEE-Eecccccce----EeeeeeeEEEeCCCCcc------CCEEEEEEEEECCCEEEEEEEEEEE
Confidence            478999 555433321    12234668999999766      999999999999998764 555543

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=5.5e-11  Score=63.63  Aligned_cols=59  Identities=22%  Similarity=0.315  Sum_probs=42.9

Q ss_pred             CcEEEEEccCCeeeeccc--cceEEee--CCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK--DLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~--~~~~~~~--~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|+| +++|.++....  ..+....  .+.|.|.++..+      |+|.|+|.|.|..|...+ ..|.|
T Consensus        34 ~p~i~W-~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          34 EPTMSW-TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN------DEAEYVCIAENKAGEQDASIHLKV   97 (100)
T ss_dssp             CCEEEE-EETTEECCCC--CCSSEEECTTSCEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEE-EeCCcccccccccceeEEeecCceEEEeCCCCcc------cCEEEEEEEEECCCEEEEEEEEEE
Confidence            479999 89999886422  1222222  347999999766      999999999999998764 44544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=3.8e-11  Score=63.44  Aligned_cols=53  Identities=25%  Similarity=0.364  Sum_probs=40.5

Q ss_pred             CcEEEEEccCCeeeeccccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.|+| +++|+.+......+. ...++.|.|.++..+      |+|.|+|.|.|..+...
T Consensus        30 ~p~v~W-~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~~~~~   83 (92)
T d1epfa2          30 PPTIIW-KHKGRDVILKKDVRFIVLSNNYLQIRGIKKT------DEGTYRCEGRILARGEI   83 (92)
T ss_dssp             CCEEEE-EETTEEGGGGCCTTEEECTTSCEEETTCCGG------GCEEEEEEEEEGGGTEE
T ss_pred             CCeEEE-EEcCcccccccceeeeeeeeeeEEECCCCHH------hCEEEEEEEEECcCCEE
Confidence            478999 888888865443333 345568999999766      99999999999866544

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-11  Score=64.37  Aligned_cols=53  Identities=17%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +|.+.| +++|+++...........++.|.|.++.++      |+|.|+|.|.|..|...
T Consensus        25 ~~~v~W-~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1          25 LARVFW-KFQNGVLKAESPKYGLMGRKNLLIFNLSEG------DSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             TCEEEE-EESSSBCCCCSSSBCCTTTTCEEECSCCGG------GCEEEEEEEEEECSSSE
T ss_pred             CCceee-ecCcccceeeeeeeecceeeEEEECCCCHH------HCcEEEEEEEEcCCCEE
Confidence            478999 788888765433333456678999999776      99999999999987655

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.3e-11  Score=63.98  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             CcEEEEEccCCeeeec--cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568          1 MYVLLWLIRDNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|+| +++|..+..  ....+....++.|.|.++..+      |+|.|+|.+.|..|.... ..|.|..
T Consensus        32 ~~~i~W-~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          32 KGTITW-YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE------DSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             SSEEEE-ECSSTTSBCCCCTTSSEEEETTEEEETTCCGG------GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CceEEE-EECCcccccccccceEEeccCCEEEeccceec------CCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            378999 777765532  233445667789999999766      999999999999988774 5565543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.8e-11  Score=64.72  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=42.9

Q ss_pred             CcEEEEEccCCeeeeccccceEE--ee-C----CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIA--LS-N----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~--~~-~----~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +|.|.| ++||+++.........  .. +    +.|.|.++..+      |+|.|+|.|.|..|.... ..|.|
T Consensus        30 ~P~i~W-~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~v~V   96 (103)
T d1wwbx_          30 KPALQW-FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM------NNGDYTLIAKNEYGKDEKQISAHF   96 (103)
T ss_dssp             CCEEEE-EETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGG------GCEEEEEEEECSSCEEEEEEEECC
T ss_pred             CCEEEE-EECCEEeeeeeeeeeeecccccccceEEEEECCCCHH------hCceEEEEEeccCCEEEEEEEEEE
Confidence            489999 9999999753322221  11 1    25999999766      999999999999998864 44444

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-11  Score=63.90  Aligned_cols=50  Identities=10%  Similarity=0.065  Sum_probs=36.5

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.|+| ++++.++.   ........+.|.|.++..+      |+|.|+|.|.|..|...
T Consensus        33 ~p~v~W-~~~~~~~~---~~~~~~~~~~L~i~~v~~~------D~G~Y~C~Asn~~g~~~   82 (90)
T d1gsma1          33 GASVQW-RGLDTSLG---AVQSDTGRSVLTVRNASLS------AAGTRVCVGSCGGRTFQ   82 (90)
T ss_dssp             TCEEEE-ESSTTTTC---CEEEESSEEEEEECSCCGG------GCEEEEEEEEETTEEEE
T ss_pred             ccEEEE-EEeeeeee---eeeccCceeeEEcCccChh------hCCcEEEEEEeCCCcEE
Confidence            378999 66665543   1122223457999999776      99999999999998765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.13  E-value=1.1e-10  Score=61.16  Aligned_cols=53  Identities=15%  Similarity=0.263  Sum_probs=39.7

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVK   67 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~   67 (116)
                      +.+.| ++||+.+..      ...++.|.|.++..+      |+|.|.|.|.|..|...+  ..|.|.
T Consensus        31 ~~~~W-~k~g~~~~~------~~~~~~l~i~~v~~~------dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          31 VKVTF-FQNGKSKKF------SRSDPNFSIPQANHS------HSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             EEEEE-EETTEEEEE------ESSCCEEEETTCCGG------GCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cEEEE-Eeecccccc------cccccccccCccCHH------HCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            57899 899987752      123557999999766      999999999999887664  344443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.5e-11  Score=63.35  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      ++|+| +++|.++... +......+++|.|.++..+      |+|.|+|.+.|..+
T Consensus        37 ~~i~W-~k~~~~l~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          37 ATVHW-VLRKPAAGSH-PSRWAGMGRRLLLRSVQLH------DSGNYSCYRAGRPA   84 (93)
T ss_dssp             SEEEE-EEECSSSSCC-CEEEEEESSEEEECSCCGG------GCEEEEEESSSSCS
T ss_pred             ceEEE-EEccccccce-eeEEecCCCEEEECCCChh------cCEEEEEEECCccc
Confidence            57999 8888887532 2234456779999999766      99999999988753

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=5.5e-10  Score=59.30  Aligned_cols=56  Identities=11%  Similarity=0.252  Sum_probs=38.3

Q ss_pred             cEEEEEccCCeeeecc-ccceEEe-eC--CeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEEE
Q psy11568          2 YVLLWLIRDNTVIAYV-KDLRIAL-SN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF   63 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~-~~~~~~~-~~--~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~~   63 (116)
                      |.|.|++.+|..+... .+..... ..  ..|.|.++..+      |+|.|+|.|.|..|......
T Consensus        31 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~t   90 (97)
T d1epfa1          31 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSEAT   90 (97)
T ss_dssp             CEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTTEEEEEE
T ss_pred             CEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchh------hceEEEEEEEeCCCcEEEEE
Confidence            6899954577766532 2222221 22  36999999766      99999999999998755433

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.09  E-value=3.1e-10  Score=59.49  Aligned_cols=47  Identities=17%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +.+.| ++||+.+..      ...++.|.|.++.++      |+|.|.|.|.|..|...+
T Consensus        33 ~~~~W-~kng~~~~~------~~~~~~l~I~~v~~~------dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2          33 HKVTY-LQNGKDRKY------FHHNSDFHIPKATLK------DSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             EEEEE-EETTEEEEE------EEECCCEEESSCCGG------GCEEEEEEEEETTEEEEC
T ss_pred             cEEEE-EEcccccce------eccccccEECcccee------ccceEEEEEEeCCCCeEE
Confidence            57899 899987652      224568999999766      999999999999876654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-10  Score=60.31  Aligned_cols=49  Identities=20%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|+| ++||..+....           .+.+++++      |+|.|.|.|.|..|.... ..|.|.
T Consensus        33 ~P~v~W-~k~g~~~~~~~-----------~~~~v~~~------d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          33 LPELKC-LKDGTFPLPIG-----------ESVTVTRD------LEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             CCEEEE-EETTTEECCTT-----------SCEECCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEEE-EEeeccceeee-----------eeeccccC------CCCEEEEEEEcCCCEEEEEEEEEEE
Confidence            489999 78877654211           13455444      999999999999997764 455554

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-10  Score=58.62  Aligned_cols=52  Identities=8%  Similarity=-0.050  Sum_probs=38.6

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVK   67 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~   67 (116)
                      .|.|.| ++++..+.        ..+..|.|.++..+      |+|.|+|.|.|..|.... ..|.|.
T Consensus        28 ~P~i~W-~~~~~~~~--------~~~~~l~i~~v~~~------DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2          28 SPSVQC-RSPRGKNI--------QGGKTLSVSQLELQ------DSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             CCEEEE-ECTTCCEE--------EESSEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             chheEE-Eeecccce--------eeeeeeeeeecccc------cccEEEEEEEeCCCEEEEEEEEEEE
Confidence            489999 66554332        24557899999766      999999999999987764 445444

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.8e-10  Score=60.49  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=38.8

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.++| ++++..+... ........+.|.|.++..+      |+|.|+|.|.|..|.... ..|.|
T Consensus        30 ~p~i~W-~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          30 SPFFSW-RTQIDSPLNG-KVTNEGTTSTLTMNPVSFG------NEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             SCEEEE-EETTCCCCSS-EEEEETTEEEEEESSCCGG------GCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceEEE-EecCccceee-eeeeecCCcEEEEeccccc------ccceEEEEEEeCCCEEEEEEEEEE
Confidence            489999 5555444321 1112222347999999766      999999999999987663 44444

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.04  E-value=2.4e-10  Score=61.71  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             CcEEEEEccCCeeeeccccceE-E-eeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI-A-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~-~-~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| ++||.++......+. . ..++.|.|.++.++      |+|.|+|.|.|..|....
T Consensus        34 ~~~v~W-~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          34 ALSYRW-LLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS------DLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CCEEEE-EESSTTCBCCCCSSEEECTTTCCEEESSCCGG------GCEEEEEEEEEEETTEEE
T ss_pred             CCEEEE-EEeeccccccccceeeeecCCCEEeecccccc------cCcEEEEEEEECCCCEEE
Confidence            378999 888877653333332 2 34568999999766      999999999999887653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.9e-10  Score=59.19  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=38.6

Q ss_pred             cEEEEEccCCeeeec-cccceE-Eee-CC----eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEE
Q psy11568          2 YVLLWLIRDNTVIAY-VKDLRI-ALS-NG----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHV   66 (116)
Q Consensus         2 p~v~W~~~~g~~~~~-~~~~~~-~~~-~~----~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v   66 (116)
                      |.|+| +++++.+.. ...... ... +.    .|.|.++..+      |+|.|+|.|.|..|...+  ..|.|
T Consensus        34 P~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~s~~~~l~V  100 (104)
T d2aw2a1          34 PHVTW-CKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPN------DNGSYRCSANFQSNLIESHSTTLYV  100 (104)
T ss_dssp             CEEEE-EEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CEEEE-EecCcccccccceeeeeEEecCCceEEEEEEccccHH------HCCeEEEEEEcCCCeEEEEEEEEEE
Confidence            79999 777665542 222211 122 21    4999999766      999999999999997664  44444

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.98  E-value=6.1e-11  Score=62.28  Aligned_cols=51  Identities=12%  Similarity=0.029  Sum_probs=39.1

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      .|.+.| ++||+++...++......++  .|.|.++..+      |+|.|+|.|.|..+.
T Consensus        29 ~~~v~W-~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~n~~~s   81 (89)
T d1tiua_          29 DVHGQW-KLKGQPLTASPDCEIIEDGKKHILILHNCQLG------MTGEVSFQAANAKSA   81 (89)
T ss_dssp             SCCCBC-CSSSCCCCSSSSCEEEECSSCEEEECCSCCSC------CCSEECCBCSSCBCC
T ss_pred             CcEEEE-EEeeeecccceeEEEEeeceeEEEEEcCCChh------cCEEEEEEECceEEE
Confidence            377899 99999997655554444443  6999999766      999999999887543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.3e-09  Score=59.00  Aligned_cols=54  Identities=22%  Similarity=0.444  Sum_probs=38.2

Q ss_pred             CcEEEEEccCCeeeecccc--------ceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKD--------LRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~--------~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.++| +++|.++.....        .....  ..+.|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        32 ~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~N~~G~~~~   95 (110)
T d1f97a2          32 PSEYSW-FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF------DSGEYYCQAQNGYGTAMR   95 (110)
T ss_dssp             CCEEEE-EETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGG------GCEEEEEEEECSSSCCEE
T ss_pred             CCEEEE-EeCCeEecCCCceeEEeecCceEEEeecccceEECCCCcc------CCEEEEEEEEECCCcEEE
Confidence            478999 888887753211        11111  2337999999766      999999999999997763

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.1e-10  Score=57.62  Aligned_cols=46  Identities=26%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             c-EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          2 Y-VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         2 p-~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      | .|.| ++||.++....       .+.+.|.....+      |+|.|+|.|.|.+|...+
T Consensus        31 P~~i~W-~k~g~~i~~~~-------~~~~~l~~~~~~------d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2          31 PVTIVW-WRGTTKIGGPA-------PSPSVLNVTGVT------QSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             CCEEEE-EETTEECSCSE-------ESSEEEEECCCS------SCEEEEEEEEETTEEEEC
T ss_pred             ceEEEE-EECCEECCCCC-------CcceEEecCCcc------ccEEEEEEEEcCCCcEEE
Confidence            5 7999 99999886321       123344444333      999999999999997665

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-09  Score=58.04  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=29.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        73 ~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          73 ELHITDAQPA------FTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEESCCTT------CCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEeccCHH------HCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            5999999766      999999999999998875 6676654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3e-09  Score=58.78  Aligned_cols=33  Identities=18%  Similarity=0.114  Sum_probs=27.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|.++.++      |+|.|+|.|.|.+|...+ ..|.|
T Consensus        95 ~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          95 IFTVEGAEKE------DEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EEECSCCCTT------TCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEECcCChh------cCEEEEEEEEECCCEEEEEEEEEE
Confidence            5999999766      999999999999998764 44443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.7e-09  Score=58.86  Aligned_cols=35  Identities=11%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEe
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKA   68 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~   68 (116)
                      .|.|.++..+      |+|.|+|.|.|..|...+ ..|.|..
T Consensus        69 ~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          69 EMQIIKAKDN------FAGNYRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEECSCCTT------SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEccCCHH------HCeEEEEEEEeCCCEEEEEEEEEEEc
Confidence            4899999766      999999999999998775 5666653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.1e-10  Score=61.61  Aligned_cols=54  Identities=22%  Similarity=0.442  Sum_probs=39.0

Q ss_pred             CcEEEEEccCCeeeeccccceE---------EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI---------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~---------~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| +++|..+........         ....+.|.|.++..+      |+|.|+|.|.|..|....
T Consensus        32 ~p~v~W-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~N~~G~~~~   94 (104)
T d1nbqa2          32 PSEYTW-FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS------DTGEYSCEARNGYGTPMT   94 (104)
T ss_dssp             CCEEEE-EETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGG------GCCCEEEEEECSSSCCEE
T ss_pred             CCEEEE-EECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcc------cCcEEEEEEEECCCceEE
Confidence            478999 888888754221111         112346899999766      999999999999998763

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-09  Score=56.13  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=39.0

Q ss_pred             cEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE--EEEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVK   67 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~--~~~~v~   67 (116)
                      +.+.| ++||+.+....      ....|.|.++..+      |+|.|.|.|.|..|...+  ..|.|.
T Consensus        31 ~~~~w-~k~g~~~~~~~------~~~~l~i~~~~~~------dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          31 YKVIY-YKDGEALKYWY------ENHNISITNATVE------DSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             EEEEE-EETTEECCSCC------CSSEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEE-EEeeecccccc------ccceEEEeeeeee------cCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            46789 89998775311      3457899999766      999999999998876655  344444

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.8e-10  Score=59.28  Aligned_cols=49  Identities=12%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             CcEEEEEccCCeeeeccc-cceEEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          1 MYVLLWLIRDNTVIAYVK-DLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-~~~~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.| ++||.++.... .......++  .|.|.++..+      |+|.|+|.|.|..
T Consensus        34 ~~~v~W-~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~n~~   85 (94)
T d1pd6a_          34 DAEVKW-LKNGQEIQMSGSKYIFESIGAKRTLTISQCSLA------DDAAYQCVVGGEK   85 (94)
T ss_dssp             SSCCEE-EESSSEECCCSSSSEEEEETTEEEEEECSCSSS------SCEEEEEEETTEE
T ss_pred             CceEEE-EEcCccceeeeeeEeeeccCCeEEeecCCCCce------ecEEEEEEEeeEE
Confidence            378999 99999986532 233344444  6999999766      9999999998853

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.6e-10  Score=59.38  Aligned_cols=54  Identities=17%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             CcEEEEEccCCeeeecc----------ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYV----------KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~----------~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.|.| ++++..+...          ...+....++.|.|.++..+      |+|.|+|.+.|..|....
T Consensus        33 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~G~~~~   96 (105)
T d1nbqa1          33 SPRVEW-KFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE------DTGTYTCMVSEEGGNSYG   96 (105)
T ss_dssp             SEEEEE-EEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTT------SCSEEEEEEEETTSSCEE
T ss_pred             CCeeEE-EeeeeceeeeeeccceeeccccceeeecCceEEEeccccc------ceeeEEEEEEECCCCEEE
Confidence            378999 5554443210          11123445668999999766      999999999999998874

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=7.2e-09  Score=55.23  Aligned_cols=60  Identities=18%  Similarity=0.317  Sum_probs=40.5

Q ss_pred             CcEEEEEccCCeeeec---------cccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568          1 MYVLLWLIRDNTVIAY---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~---------~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|.|++.++.....         ....+....+++|.|.++..+      |+|.|+|.+.|..|.... ..+.|
T Consensus        30 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~------D~G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          30 SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK------DNGEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGG------GCEEEEEEEEETTSSSEEEEEEEE
T ss_pred             CCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCcc------CCEEEEEEEEECCCCEEEEEEEEE
Confidence            3789995544443321         011234456678999999766      999999999999988764 44443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.9e-11  Score=63.34  Aligned_cols=54  Identities=15%  Similarity=0.086  Sum_probs=37.9

Q ss_pred             CcEEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCce-EEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g~~~~   61 (116)
                      .|.|+| +++|.++..............|.|.++..+      |.| .|+|.|.|..|....
T Consensus        31 ~p~v~W-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~~Y~C~a~N~~G~~~~   85 (92)
T d2ifga1          31 LEQAGW-ILTELEQSATVMKSGGLPSLGLTLANVTSD------LNRKNVTCWAENDVGRAEV   85 (92)
T ss_dssp             CCCCCE-EESCCCSSEEECCCCCSSEEEEEEESCCST------TTTCCEEECCEETTEECCE
T ss_pred             CcEEEE-EECCceeeeeeeeeeeccceeEEEcccccc------ccceEEEEEEEcCCCEEEE
Confidence            478999 788776653211111222347999999766      888 799999999997764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.84  E-value=6.9e-09  Score=55.82  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH   65 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~   65 (116)
                      .|.|.++..+      |+|.|+|.|.|..|...+ ..|.
T Consensus        75 ~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~L~  107 (109)
T d2fdbp2          75 VLYIRNVTFE------DAGEYTCLAGNSIGISFHSAWLT  107 (109)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEECCCCHH------HCeEEEEEEEECCCEEEEEEEEE
Confidence            6999999766      999999999999998874 4443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.3e-10  Score=57.67  Aligned_cols=48  Identities=13%  Similarity=0.200  Sum_probs=35.7

Q ss_pred             cEEEEEccCCeeeeccccce--EEeeCC--eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLR--IALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~--~~~~~~--~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.+.| +++|.++......+  ....++  .|.|.++..+      |+|.|+|.|.|..
T Consensus        29 ~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~   80 (90)
T d1x44a1          29 ANVKW-FKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKA------DAAEYSVMTTGGQ   80 (90)
T ss_dssp             CCCEE-EETTEECCCSTTCSEEEEEETTEEEEEEEEECTT------TCSEEEEEETTEE
T ss_pred             ceEEE-EEeecccCCCCCccEEEEEeCCccEEEECccccc------cCEEEEEEEecce
Confidence            67899 89999886543332  333333  7999999766      9999999998853

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.4e-08  Score=52.98  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      .|.|.++..+     .|+|.|.|.|.|..|.... ..|.|
T Consensus        66 ~L~I~~v~~~-----~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          66 ELHIENLNME-----ADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEECSCCTT-----TSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeccccc-----cCCEEEEEEEEECCCEEEEEEEEEE
Confidence            6999998632     3999999999999998774 44544

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.1e-08  Score=53.12  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=38.2

Q ss_pred             CcEEEEEccCCeeeeccccceE----Eee----------CCeEEecCCCCCCCCCCCCce-EEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVKDLRI----ALS----------NGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~~~~~----~~~----------~~~l~i~~v~~~~~~~~~d~G-~y~C~a~n~~g~~~~   61 (116)
                      .|.|.| ++||..+........    ...          ...|.|.++..+      |.| .|+|.|.|.+|...+
T Consensus        31 ~p~i~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~g~~Y~C~A~N~~G~~~~   99 (107)
T d1iray3          31 SDIAYW-KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR------FYKHPFTCFAKNTHGIDAA   99 (107)
T ss_dssp             TCEEEE-EETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG------GGSSCEEEEEECSSCEEEE
T ss_pred             CCeEEE-EECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH------HCCcEEEEEEEeCCCeEEE
Confidence            488999 899988864322111    010          125999999766      999 599999999997764

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.4e-08  Score=54.40  Aligned_cols=59  Identities=10%  Similarity=0.098  Sum_probs=38.1

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE-EEEEEEEeC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVKAG   69 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~-~~~~~v~~~   69 (116)
                      +++| +++++.+...... .......|.|...+.+      |+|.|+|.|.|..|... ...+.+.++
T Consensus        38 ~v~W-~~~~~~l~~~~~~-~~~~~s~l~i~~~~~d------d~g~ytC~A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          38 TVVL-LRGEKELKREPAV-GEPAEVTTTVLVRRDH------HGAQFSCRTELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EEEE-EETTEEEEEEECC-TTTEEEEEEEECCSSC------SSCEEEEEEEEECGGGTSCEEEEECCC
T ss_pred             EEEE-ccccccccccccc-cccceEEEEEeeehhH------CCCEEEEEEEeCCCCccCeEeeeEcCC
Confidence            6889 9999988642110 0011225788877555      99999999999988654 344444443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=1.4e-07  Score=49.91  Aligned_cols=52  Identities=23%  Similarity=0.323  Sum_probs=37.7

Q ss_pred             cEEEEEccCCeeeecc--------ccce-EEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYV--------KDLR-IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~--------~~~~-~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      ..|.| ++++..+...        ...+ ....+++|.|.+++.+      |+|.|+|.+.+..|...
T Consensus        27 ~~I~W-~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~------DsG~Y~c~v~~~~g~~~   87 (98)
T d1hnga1          27 DEVRW-ERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD------DSGTYNVTVYSTNGTRI   87 (98)
T ss_dssp             EEEEE-EETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGG------GCEEEEEEEEETTCCEE
T ss_pred             heeee-eccccceeEEccCCccccCCCeEEECCCccEEEeCCCHH------HCEEEEEEEEeCCCCEE
Confidence            36899 7777766421        1112 2345678999999766      99999999999988764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.1e-08  Score=51.66  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=24.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      +|.|.++..+      |+|.|+|.|.|..|...+
T Consensus        61 ~L~I~~v~~~------D~G~Y~C~a~N~~G~~~s   88 (96)
T d2c9aa1          61 SFNVVNTTKR------DAGKYRCMIRTEGGVGIS   88 (96)
T ss_dssp             EEEECSCCGG------GCSEEEEEEEETTEEEEE
T ss_pred             EEEECCCCHH------HCeEEEEEEEeCCCeEEE
Confidence            6999999766      999999999999998764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.2e-09  Score=57.28  Aligned_cols=58  Identities=17%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             cEEEEEccCCeeeeccccceE--E--eeC----CeEEecCCCCCCCCCCCC-ceEEEEEEEcCCCceEE-EEEEE
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRI--A--LSN----GSLMFPPFPETGFRPDVH-STVYRCRASNEAGVILS-RFVHV   66 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~--~--~~~----~~l~i~~v~~~~~~~~~d-~G~y~C~a~n~~g~~~~-~~~~v   66 (116)
                      +.+.| ++++..+......++  .  ...    ..|.|.++..+      | +|.|+|.|.|..|.... ..|.|
T Consensus        37 ~~v~W-~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------D~~G~Y~C~A~N~~G~~~~~~~L~V  104 (115)
T d2crya1          37 DRIAW-SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA------DFQTIYNCTAWNSFGSDTEIIRLKE  104 (115)
T ss_dssp             SEEEE-ESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH------HHHSCEEEEEECSSCEEEEEECCCC
T ss_pred             eEEEE-eeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh------cCCeEEEEEEEECCCeEEEEEEEEE
Confidence            57899 888888764222111  1  111    15899999765      8 79999999999998764 43433

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.8e-08  Score=50.44  Aligned_cols=52  Identities=19%  Similarity=0.331  Sum_probs=36.0

Q ss_pred             cEEEEEccCCeeeecc--------c--cceEEe--eCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568          2 YVLLWLIRDNTVIAYV--------K--DLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~--------~--~~~~~~--~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      +.|.| ++++..+...        +  ..+...  .++.|.|.+++.+      |+|.|.|.+.|..+...
T Consensus        24 ~~v~W-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~------DsG~Y~c~~~n~~~t~~   87 (93)
T d1ccza1          24 KEVLW-KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS------DEDEYEMESPNITDTMK   87 (93)
T ss_dssp             SCEEE-EETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGG------GCEEEEEECTTCCSCEE
T ss_pred             cEEEE-EEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChh------hCEEEEEEEECCCcEEE
Confidence            57899 7777766421        1  112222  2457999999776      99999999999876554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.9e-08  Score=53.34  Aligned_cols=51  Identities=16%  Similarity=0.115  Sum_probs=31.6

Q ss_pred             cEEEEEccCCeeeeccccceEEee-CC---eEEecCCCCCCCCCCCCceEEEEEEEcCCCce
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALS-NG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI   59 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~-~~---~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~   59 (116)
                      ++|+| ++||+++........... ..   .|.+.....+      |.|.|+|.|.|..+..
T Consensus        35 ~~i~W-~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d------~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          35 LTLFL-FRGNETLHYETFGKAAPAPQEATATFNSTADRED------GHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             EEEEE-EETTEEEEEEECCSSTTCTTCEEEEEEEECCGGG------GGCEEEEEEEEECGGG
T ss_pred             ceEEE-EcCCEEeeecccceEeecccceeEEEEEeeehhc------CCcEEEEEEEecCCCC
Confidence            47999 999999864221111111 11   3555555433      8889999999987644

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.53  E-value=6e-08  Score=52.53  Aligned_cols=57  Identities=23%  Similarity=0.206  Sum_probs=38.2

Q ss_pred             CcEEEEEccCCeeeeccc-----cceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE
Q psy11568          1 MYVLLWLIRDNTVIAYVK-----DLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS   61 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~~-----~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~   61 (116)
                      .|.+.| ++++..+....     ..+. ...++.|.|.+++.++   ..|.|.|.|.|.|.+|....
T Consensus        32 ~p~v~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D---~gd~g~Y~C~A~N~~g~~~~   94 (111)
T d1biha2          32 KPLITW-KKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED---VSDIYKYVCTAKNAAVDEEV   94 (111)
T ss_dssp             CCEEEE-EEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGG---CCSSEEEEEEEECTTCSSCE
T ss_pred             CCEEEE-EeCCccccccccceeeeeeeccccccccEEeeeEeec---cCCceEEEEEEEeCCCCceE
Confidence            488999 77765553211     1122 3446789999997761   22445899999999987764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.49  E-value=9.9e-08  Score=50.23  Aligned_cols=36  Identities=25%  Similarity=0.581  Sum_probs=32.7

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|+..| .+..+.+|+++.|.|.+.|.|.|.++|+.
T Consensus         2 P~f~~~p-~~~~v~~G~~~~l~C~~~g~P~p~v~W~~   37 (97)
T d1koaa1           2 PRFIVKP-YGTEVGEGQSANFYCRVIASSPPVVTWHK   37 (97)
T ss_dssp             CEEEECC-CCCEEETTSCEEEEEEEECSSCCEEEEEE
T ss_pred             CEEEEeC-CCEEEeCCCcEEEEEEEEEcCCCEEEEEE
Confidence            7888887 78889999999999999999999999973

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.49  E-value=1e-07  Score=49.55  Aligned_cols=35  Identities=31%  Similarity=0.478  Sum_probs=32.0

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|+..+ .+..+..|+++.|.|.+.|.|.|.++|+
T Consensus         2 P~f~~~~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~   36 (89)
T d1cs6a4           2 PDWLDVI-TDTEADIGSDLRWSCVASGKPRPAVRWL   36 (89)
T ss_dssp             EEEEECC-CCEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             CCeEEEC-CCEEECCCCcEEEEEEEEEEcCCEEEEE
Confidence            6777776 7889999999999999999999999997

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.49  E-value=5.2e-08  Score=50.65  Aligned_cols=37  Identities=19%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...|+....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~   39 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH   39 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEE
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEe
Confidence            7787777666778899999999999999999999973

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.5e-07  Score=47.60  Aligned_cols=35  Identities=34%  Similarity=0.774  Sum_probs=31.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      |.|...| .+..+..|+.+.|.|.+.|.|.| .+.|+
T Consensus         2 P~f~~~P-~~~~v~~G~~~~l~C~~~g~P~P~~i~W~   37 (85)
T d1rhfa2           2 PFFTVEP-KDLAVPPNAPFQLSCEAVGPPEPVTIVWW   37 (85)
T ss_dssp             CEEEECC-CCEEECTTCCEEEEEEEECSSSCCEEEEE
T ss_pred             CcEEEeC-CcEEEcCCCEEEEEEEEecCCcceEEEEE
Confidence            7787877 78899999999999999999998 89997

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.42  E-value=1.7e-07  Score=48.82  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=31.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+....+....+.+|+++.|.|.+.|.|.|.++|+
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~   40 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR   40 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEE
Confidence            666666558889999999999999999999999997

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.39  E-value=2.5e-07  Score=49.47  Aligned_cols=36  Identities=17%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+....|.+..+..|+++.|.|.+.|.|.|.+.|+
T Consensus         5 P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~   40 (109)
T d2fdbp2           5 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI   40 (109)
T ss_dssp             CEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEE
T ss_pred             CEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEE
Confidence            777666568899999999999999999999999996

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.38  E-value=2.7e-07  Score=48.12  Aligned_cols=36  Identities=17%  Similarity=0.395  Sum_probs=31.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.++..+ ....+.+|+++.|.|.+.|.|.|.++|+.
T Consensus         3 P~i~~~~-~~~~v~~G~~~~l~c~~~g~P~p~v~W~~   38 (93)
T d1wiua_           3 PKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTV   38 (93)
T ss_dssp             CEECCCC-CEEEECSSBCCEEEEEEECCSSCEEEEEC
T ss_pred             CeEEeCC-CcEEEeCCCeEEEEEEEEEecCCeEEEEe
Confidence            6676655 88999999999999999999999999974

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.34  E-value=2e-07  Score=47.83  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +.|.++||..+..        .+..|.|.++..+      |+|.|+|.+.|..+
T Consensus        37 ~~~~~~~~~~~~~--------~~~~l~i~~~~~~------d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          37 STQWFHNESLISS--------QASSYFIDAATVN------DSGEYRCQTNLSTL   76 (84)
T ss_dssp             CCEEEETTEEEES--------SCSEEEESSCCGG------GCEEEEEECSSSCC
T ss_pred             EEEEeeeceeeee--------cceeeEecCCccc------CCEEEEEEccCCCc
Confidence            3444777776542        3457999999766      99999999988654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.33  E-value=3.5e-07  Score=48.12  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|+..+ ....+.+|+.+.|.|.+.|.|.|.++|+.
T Consensus         5 P~f~~~~-~~~~v~~g~~v~l~c~v~g~P~p~v~W~k   40 (98)
T d1g1ca_           5 PKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWYK   40 (98)
T ss_dssp             EEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred             CeEecCC-CcEEEcCCCcEEEEEEEEEecCCeEEEEe
Confidence            7777776 78899999999999999999999999973

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.7e-07  Score=46.60  Aligned_cols=40  Identities=15%  Similarity=0.141  Sum_probs=29.4

Q ss_pred             EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      ..|.+++|..+..        .+..|.|.++..+      |+|.|.|.|.|..+
T Consensus        33 ~~~~~~~~~~~~~--------~~~~l~i~~v~~~------d~G~Y~C~a~~s~~   72 (82)
T d1f2qa1          33 STKWFHNGSLSEE--------TNSSLNIVNAKFE------DSGEYKCQHQQVNE   72 (82)
T ss_dssp             CCEEEETTEECSC--------CSSEEEECSCCGG------GCEEEEEECTTSSC
T ss_pred             ceeeeeeeeeeec--------ccceeEECCCChh------hCCcEEEEecCCCC
Confidence            3444777776542        3457999999766      99999999988754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.4e-07  Score=49.19  Aligned_cols=36  Identities=14%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ .+..+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus         3 P~i~~~~-~~~~v~~G~~v~l~C~~~g~P~p~v~W~~   38 (92)
T d2ifga1           3 PTLKVQV-PNASVDVGDDVLLRCQVEGRGLEQAGWIL   38 (92)
T ss_dssp             CEEEEEC-CSSCCBTTCCEEEEEEEECSSCCCCCEEE
T ss_pred             CEEEEeC-CCEEEeCCCEEEEeeeccCCCCcEEEEEE
Confidence            7777776 56778899999999999999999999973

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.27  E-value=5.5e-07  Score=47.69  Aligned_cols=36  Identities=31%  Similarity=0.718  Sum_probs=31.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|...+ .+..+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus         9 P~f~~~~-~~~~v~~G~~~~l~C~~~g~P~p~v~W~k   44 (102)
T d1fhga_           9 PYFTKTI-LDMEVVEGSAARFDCKVEGYPDPEVMWFK   44 (102)
T ss_dssp             EEEEECC-CCEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred             CeEEcCC-CcEEEecCCcEEEEEEEEeccCCeEEEEe
Confidence            6776666 78899999999999999999999999973

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=8.2e-07  Score=46.18  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=31.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +.|...| ....+.+|+.+.|.|.+.|.|.|.+.|+.
T Consensus         2 ~~F~~~P-~~~~v~~G~~~~l~C~v~g~p~p~v~W~~   37 (92)
T d1epfa2           2 LMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKH   37 (92)
T ss_dssp             SEEEECC-SSEECCTTSCEEECCEEECSSCCEEEEEE
T ss_pred             cEEEEcC-CCEEEeCCCcEEEEEEEeecCCCeEEEEE
Confidence            4565665 78899999999999999999999999973

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.3e-07  Score=46.14  Aligned_cols=28  Identities=7%  Similarity=0.065  Sum_probs=24.8

Q ss_pred             eEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         89 RFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ...+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~   35 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRS   35 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEEC
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEe
Confidence            3457889999999999999999999973

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1e-06  Score=46.51  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|+..+ ....+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus         1 P~~~~~p-~~~~v~~G~~~~l~C~v~g~p~p~v~W~k   36 (101)
T d2cqva1           1 PQIIQFP-EDQKVRAGESVELFGKVTGTQPITCTWMK   36 (101)
T ss_dssp             CEESCCC-CSEEEETTCCEEEEEEEESSSSCEEEEEE
T ss_pred             CeEEeeC-CcEEEeCCCcEEEEEEEEecCCCEEEEEe
Confidence            3444444 78889999999999999999999999973

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.17  E-value=3.8e-07  Score=47.38  Aligned_cols=32  Identities=25%  Similarity=0.707  Sum_probs=28.3

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ..| .+..+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus         4 ~~P-~~~~v~~G~~~~l~C~~~g~P~p~v~W~~   35 (91)
T d1tnna_           4 TKP-RSMTVYEGESARFSCDTDGEPVPTVTWLR   35 (91)
T ss_dssp             BCC-CCEECSSSSCCCEEEECCCSSCCCCEEES
T ss_pred             eCC-cCEEEeCCCcEEEEEEEEEEeCCeEEEEE
Confidence            344 77889999999999999999999999974

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.17  E-value=7.8e-07  Score=45.61  Aligned_cols=39  Identities=13%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             EEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568          4 LLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus         4 v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      +.| ++||..+..        .+..|.|.++..+      |+|.|.|.+.|..+
T Consensus        37 ~~w-~~~g~~~~~--------~~~~l~i~~v~~~------dsG~Y~C~a~ns~~   75 (85)
T d2fcba1          37 IQW-FHNGNLIPT--------HTQPSYRFKANNN------DSGEYTCQTGQTSL   75 (85)
T ss_dssp             CEE-EETTEECTT--------CCSSEEEEECCGG------GCEEEEEECTTSBC
T ss_pred             EEe-ecccccccc--------cccceEEeecccc------CCcEEEEECCCCcc
Confidence            456 888877642        2447889999766      99999999998754

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.7e-06  Score=43.36  Aligned_cols=30  Identities=23%  Similarity=0.515  Sum_probs=25.7

Q ss_pred             CCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         86 PPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        86 ~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.....+..|+++.|.|.+.|.|.|.++|+
T Consensus         7 P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~   36 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTTGCESPFFSWR   36 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEE
T ss_pred             CCCcEEEECCCEEEEEEeccCCCCceEEEE
Confidence            334556678999999999999999999996

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2e-06  Score=45.76  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.++........+..|+++.|.|.+.|.|.|.+.|+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~   37 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK   37 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEE
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEE
Confidence            666665545566778999999999999999999996

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.6e-06  Score=44.54  Aligned_cols=35  Identities=20%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcC---CceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSP---TPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P---~p~i~W~  115 (116)
                      +.|+..| .+..+..|+++.|.|.+.|.|   .|.+.|+
T Consensus         5 ~~Fv~~P-~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~   42 (110)
T d2avga1           5 GLFVMRP-QDGEVTVGGSITFSARVAGASLLKPPVVKWF   42 (110)
T ss_dssp             CSEEECC-CCEEEETTSEEEEEEEEECCSCSSSCEEEEE
T ss_pred             CEeEECC-CeEEEECCCCEEEEEeecCCCCCCCCEEEEE
Confidence            6777776 789999999999999999999   6889997

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.7e-06  Score=43.73  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      |.+...+ ....+.+|+.+.|.|.+.|.|+| .++|+
T Consensus         3 P~i~~~~-~~~~v~~G~~v~l~C~v~g~P~p~~i~W~   38 (101)
T d3b5ha1           3 PRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWY   38 (101)
T ss_dssp             CCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEE
T ss_pred             ceEEEcC-CcEEECcCCeEEEEEEEEecCCeeEEEEE
Confidence            6666665 78889999999999999999988 68996

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=2.1e-06  Score=44.92  Aligned_cols=35  Identities=26%  Similarity=0.572  Sum_probs=29.3

Q ss_pred             CceEecCCCeEEEeCC---CcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNE---SGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g---~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.|+..| .+..+..|   +++.|.|.+.|.|.|.++|+
T Consensus         5 P~f~~~P-~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~   42 (97)
T d1cs6a1           5 PVFEEQP-AHTLFPEGSAEEKVTLTCRARANPPATYRWK   42 (97)
T ss_dssp             EEEEECC-CCEEEETTCSCCEEEECCEEEEESCCEEEEE
T ss_pred             CEEEEeC-CCEEEECccCCCeEEEEEEEEEeCCCEEEEE
Confidence            7777776 66666655   68999999999999999997

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.6e-06  Score=45.09  Aligned_cols=35  Identities=14%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcC-CceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSP-TPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~p~i~W~  115 (116)
                      +.|+..+ ....+..|+++.|.|.+.|.| .|.++|+
T Consensus         4 ~~fi~~~-~~~~v~~G~~v~L~C~v~g~p~~P~v~W~   39 (104)
T d2aw2a1           4 QLYIKRQ-SEHSILAGDPFELECPVKYCANRPHVTWC   39 (104)
T ss_dssp             EECCCTT-EEEEEETTSCEEEEEEEECSSSCCEEEEE
T ss_pred             cEEEecC-CeEEEeCCCeEEEEEEEEeeCCCCEEEEE
Confidence            3444444 778899999999999999999 5899996

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.1e-05  Score=41.65  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      |.++..++....+..|+++.|.|.+. |.|.|.++|+
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~   39 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWR   39 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEE
Confidence            66666665678888999999999875 8899999996

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=5.6e-06  Score=45.04  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=28.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEE-EEEEEEeC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVHVKAG   69 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~-~~~~v~~~   69 (116)
                      +|.|.+++.+      |+|.|.|.+.+..+.... ..|.|.+|
T Consensus        82 sL~I~~v~~~------D~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          82 ALRIQNVRFS------DEGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             EEEEEEEchh------HCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            6999999766      999999999998765553 55666553

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.98  E-value=2.5e-06  Score=44.65  Aligned_cols=28  Identities=25%  Similarity=0.637  Sum_probs=25.0

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+..|+++.|.|.+.|.|.|.+.|+
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~   40 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWL   40 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEE
Confidence            3456778999999999999999999997

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=1.5e-06  Score=45.73  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             CceEecC-CCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEP-PYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~-~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ..+..+..|+++.|.|.+.|.|.|.++|+.
T Consensus         4 P~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~   41 (100)
T d1qz1a3           4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK   41 (100)
T ss_dssp             EEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE
T ss_pred             CEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEe
Confidence            5555444 123445579999999999999999999973

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=9.4e-06  Score=41.54  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=28.7

Q ss_pred             ceEecCCCeEEEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      .+....+....+.+|+++.|.|.+. +.|.|.+.|+
T Consensus         3 ~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~   38 (89)
T d1gl4b_           3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWT   38 (89)
T ss_dssp             EEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEE
T ss_pred             EEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEe
Confidence            3444445788899999999999997 6789999997

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.7e-06  Score=42.59  Aligned_cols=28  Identities=25%  Similarity=0.699  Sum_probs=26.3

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~   31 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWV   31 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEE
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEE
Confidence            6788899999999999999999999997

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.95  E-value=5.6e-06  Score=42.89  Aligned_cols=35  Identities=23%  Similarity=0.555  Sum_probs=30.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCc-eeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTP-KIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p-~i~W~  115 (116)
                      |.|...| .+..+.+|+.+.|.|.+.|.|.| .+.|+
T Consensus         3 P~i~~~p-~~~~v~~g~~~~l~C~~~g~p~p~~v~W~   38 (94)
T d1biha1           3 PVLKDQP-AEVLFRENNPTVLECIIEGNDQGVKYSWK   38 (94)
T ss_dssp             CEECCCC-SEEEEETTSCEEECCCEESCCSSCEEEEE
T ss_pred             CEEEecC-CcEEEeCCCeEEEEEEecCCCCeeEEEEE
Confidence            6666665 78899999999999999999976 69997

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=8.1e-06  Score=42.86  Aligned_cols=36  Identities=17%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+.
T Consensus         2 ~sV~t~~-~~v~v~~G~~v~l~C~~~g~p~p~v~W~~   37 (102)
T d1f97a1           2 GSVYTAQ-SDVQVPENESIKLTCTYSGFSSPRVEWKF   37 (102)
T ss_dssp             CEEECSC-SEEEEETTCCEEEECEEESCSSEEEEEEE
T ss_pred             CCEEccC-CcEEEeCCCEEEEEEEcCCCCCCeEEEEe
Confidence            3343443 67888999999999999999999999973

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.6e-06  Score=44.37  Aligned_cols=29  Identities=28%  Similarity=0.558  Sum_probs=27.1

Q ss_pred             CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         87 PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        87 ~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.+..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~   39 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCL   39 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEE
Confidence            47888999999999999999999999997

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.4e-06  Score=42.38  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEE
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEW  114 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W  114 (116)
                      |.|. .+ ++..+..|+++.|.|.+.|.|.|.+.|
T Consensus         3 P~f~-~~-~~~~v~~G~~v~l~C~~~g~p~p~~~~   35 (96)
T d2c9aa1           3 PHFL-RI-QNVEVNAGQFATFQCSAIGRTVAGDRL   35 (96)
T ss_dssp             CEEC-CC-CCEEECSSSCEEEEEEEESCCCSSCEE
T ss_pred             Ceec-cc-CCEEEeCCCEEEEEEEEeecCCCcEEE
Confidence            7775 44 889999999999999999999887765

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.89  E-value=6.3e-06  Score=42.00  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...| ....+.+|+++.|.|.+.|.|.|.+.|+
T Consensus         6 pvi~~~P-~~~~v~~G~~vtL~C~~~~~~~~~~~~~   40 (84)
T d1fnla1           6 AVVFLEP-QWYSVLEKDSVTLKCQGAYSPEDNSTQW   40 (84)
T ss_dssp             CEEEEES-CCSEEETTCCEEEEEECCCBTTBCCCEE
T ss_pred             CEEEECC-CCcEEeCCCeEEEEEEeccCCCCeEEEE
Confidence            6666666 5677889999999999999999977664

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.82  E-value=2.1e-05  Score=40.96  Aligned_cols=28  Identities=7%  Similarity=0.061  Sum_probs=26.0

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      .+..+..|+++.|.|.+.|.|.|.+.|+
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~   38 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYF   38 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEE
Confidence            5678889999999999999999999997

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=42.47  Aligned_cols=29  Identities=24%  Similarity=0.597  Sum_probs=26.0

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      ....+.+|+++.|.|.+.|.|.|.+.|++
T Consensus        12 ~~v~v~~g~~v~L~C~~~g~p~p~v~W~~   40 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAYSGFSSPRVEWKF   40 (105)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEE
T ss_pred             CeEEEeCCCeEEEEEEeCCCCCCeeEEEe
Confidence            56678889999999999999999999973

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=3.5e-05  Score=40.01  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=25.3

Q ss_pred             CeEEEeCCCcEEEEeeecCcCC-ceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPT-PKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~-p~i~W~~  116 (116)
                      ....+..|+++.|.|.+.|.|+ |.+.|+.
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~   37 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDISWFS   37 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEEC
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEEEEEE
Confidence            5678889999999999999985 7999973

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.1e-06  Score=44.17  Aligned_cols=29  Identities=28%  Similarity=0.532  Sum_probs=26.9

Q ss_pred             CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         87 PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        87 ~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +....+.+|+++.|.|.+.|.|.|.++|+
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~   44 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQ   44 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEe
Confidence            46888999999999999999999999996

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=6.7e-06  Score=41.68  Aligned_cols=35  Identities=11%  Similarity=0.068  Sum_probs=25.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |.+...| ....+.+|+++.|.|.+.+.|.|...|+
T Consensus         2 P~It~~P-~~~~v~~G~~v~L~C~~~~~~~~~~~~~   36 (82)
T d1f2qa1           2 PKVSLNP-PWNRIFKGENVTLTCNGNNFFEVSSTKW   36 (82)
T ss_dssp             CCCEEES-SCSEEETTCCEEEECCTTCC----CCEE
T ss_pred             CEEEEcC-CCeEEeCCCeEEEEEEEeeeeeecceee
Confidence            6676776 5567889999999999999999877664

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.69  E-value=1.1e-05  Score=42.68  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=28.9

Q ss_pred             ceEecCCCeEEEeCCCcEEEEeee-cCcCCceeEEeC
Q psy11568         81 LFRIEPPYRFEFSNESGGRLDCAA-QGSPTPKIEWLI  116 (116)
Q Consensus        81 ~~~~~~~~~~~~~~g~~~~l~C~~-~g~P~p~i~W~~  116 (116)
                      .|...+.....+.+|+.+.|.|.+ .|.|.|.++|+.
T Consensus         5 ~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k   41 (105)
T d1cs6a2           5 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL   41 (105)
T ss_dssp             CCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEE
T ss_pred             cccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEE
Confidence            344444466789999999999997 789999999973

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3e-05  Score=40.13  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      |.|+........+.+|+++.|.|.+. .|.|.+.|+.
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k   41 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLK   41 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEE
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEE
Confidence            66766654567889999999999985 5999999973

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.8e-05  Score=40.31  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCC-ceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPT-PKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-p~i~W~~  116 (116)
                      |.+...+ ....+.+|+++.|.|.+.|.|+ +.++|+.
T Consensus         7 P~~~~~~-~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k   43 (93)
T d1n26a1           7 PAQEVAR-GVLTSLPGDSVTLTCPGVEPEDNATVHWVL   43 (93)
T ss_dssp             CCCCCCT-TEEEECTTCCEEEECTTSCTTCCSEEEEEE
T ss_pred             CcEEeCC-CCEEEeCCCcEEEEEEeecCCCCceEEEEE
Confidence            6665555 7888899999999999999875 5899973

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=4.1e-05  Score=40.70  Aligned_cols=29  Identities=31%  Similarity=0.390  Sum_probs=24.1

Q ss_pred             EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      ...+++|.|.+++.+      |+|.|+|...+..+
T Consensus        67 l~~ngSL~I~~v~~~------D~G~Y~c~v~~~~~   95 (107)
T d1l6za1          67 IYSNGSLLFQMITMK------DMGVYTLDMTDENY   95 (107)
T ss_dssp             ECTTSCEEECSCCGG------GCEEEEEEEEETTE
T ss_pred             EcccccEEEcCCCch------hCEEEEEEEEECCC
Confidence            345679999999776      99999999987754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.1e-05  Score=39.76  Aligned_cols=31  Identities=10%  Similarity=0.223  Sum_probs=26.4

Q ss_pred             cCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         85 EPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        85 ~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .++.+..+..|+++.|.|.+ +.|.|.+.|++
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k   35 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-SEDDANVKWFK   35 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-SSSSCCCEEEE
T ss_pred             cCCCCEEEeCCCcEEEEEEE-CCCCceEEEEE
Confidence            34588899999999999999 46999999973

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.8e-05  Score=40.24  Aligned_cols=27  Identities=22%  Similarity=0.513  Sum_probs=23.5

Q ss_pred             eEEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      ...+..|+++.|.|.+ .|.|.|.+.|+
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~   38 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWF   38 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEE
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEE
Confidence            3467889999999988 58999999997

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.47  E-value=2.4e-05  Score=40.12  Aligned_cols=31  Identities=16%  Similarity=0.356  Sum_probs=26.7

Q ss_pred             cCCCeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         85 EPPYRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        85 ~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .|+.+..+.+|+++.|.|.+ +.|.|.+.|+.
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k   36 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKL   36 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCS
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEE
Confidence            34588999999999999998 57999999974

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00011  Score=39.40  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .|.|.+++.+      |+|.|.|.+.+..+...
T Consensus        89 sL~I~~v~~~------D~G~Y~C~v~~~~~~~~  115 (124)
T d1eaja_          89 SINVTNLQLS------DIGTYQCKVKKAPGVAN  115 (124)
T ss_dssp             CEEECSCCGG------GCEEEEEEEEETTEEEE
T ss_pred             EEEEcccEEc------cCEEEEEEEEECCCeEE
Confidence            6999999766      99999999998876444

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.35  E-value=6.5e-05  Score=38.09  Aligned_cols=35  Identities=26%  Similarity=0.625  Sum_probs=27.5

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcCCce-eEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSPTPK-IEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~-i~W~  115 (116)
                      |.+...| ....+.+|+.+.|.|.+.+.|.+. +.|+
T Consensus         5 p~i~~~P-~~~~v~~G~~v~L~C~~~~~~~~~~~~w~   40 (85)
T d2fcba1           5 AVLKLEP-QWINVLQEDSVTLTCRGTHSPESDSIQWF   40 (85)
T ss_dssp             CEEEEES-CCSEEETTCEEEEEEECSSCCCTTCCEEE
T ss_pred             CEEEECC-CCeEEcCCCeEEEEEEEeeccceeEEEee
Confidence            5666666 566788999999999999999875 4554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.35  E-value=2.3e-05  Score=42.00  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             EEEeCCCcEEEEeee-cCcCCceeEEe
Q psy11568         90 FEFSNESGGRLDCAA-QGSPTPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~-~g~P~p~i~W~  115 (116)
                      ..+.+|+++.|.|.+ .|.|.|.+.|+
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~   38 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWK   38 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEE
Confidence            345789999999986 89999999997

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=9.8e-05  Score=38.99  Aligned_cols=25  Identities=24%  Similarity=0.643  Sum_probs=22.5

Q ss_pred             EEeCCCcEEEEeeec-CcCCceeEEe
Q psy11568         91 EFSNESGGRLDCAAQ-GSPTPKIEWL  115 (116)
Q Consensus        91 ~~~~g~~~~l~C~~~-g~P~p~i~W~  115 (116)
                      .+..|+++.|.|.+. |.|.|.++|+
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~   38 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWF   38 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEE
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEE
Confidence            567899999999985 8999999997

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=7.5e-05  Score=39.48  Aligned_cols=27  Identities=4%  Similarity=0.022  Sum_probs=21.5

Q ss_pred             eEEEeCCCcEEEEeeecC-c--CCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQG-S--PTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g-~--P~p~i~W~  115 (116)
                      ...+.+|+.+.|.|.+.| .  |.+.++|+
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~   40 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLF   40 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEE
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEE
Confidence            346788999999999987 4  45578897

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00084  Score=33.94  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=34.2

Q ss_pred             CcEEEEEccCCeeeecc---ccceEEee-CC-----eEEecCCCCCCCCCCCCceEEEEEEEcCCCceEEE
Q psy11568          1 MYVLLWLIRDNTVIAYV---KDLRIALS-NG-----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR   62 (116)
Q Consensus         1 ~p~v~W~~~~g~~~~~~---~~~~~~~~-~~-----~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~~~   62 (116)
                      .|.|+|-..+|..-..+   +.....+. ++     .|.+..+...      |.|.|+|.|.-..+.+.+.
T Consensus        33 RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~s------DnGsYrCSanf~s~vieSH   97 (104)
T d1xaua_          33 RPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLS------DNGSYSCSTNFNSQVINSH   97 (104)
T ss_dssp             CCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGG------GCEEEEEEEEETTEEEECC
T ss_pred             CCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeec------CCCceEEecCCChhheecc
Confidence            38899965565433222   22222222 22     3666777554      9999999999887766653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.13  E-value=0.00038  Score=35.45  Aligned_cols=27  Identities=26%  Similarity=0.475  Sum_probs=21.8

Q ss_pred             eEEEeCCCcEEEEeeecC-cCCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g-~P~p~i~W~  115 (116)
                      ...+.+|+++.|.|.+.+ .|.+.+.|+
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~   38 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYL   38 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEE
Confidence            345788999999999875 466689997

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00016  Score=37.16  Aligned_cols=27  Identities=15%  Similarity=0.425  Sum_probs=23.2

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ....+.+|+++.|.|.+.| |.|.+.|+
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~   31 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWK   31 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeee
Confidence            4567789999999999998 77899996

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.05  E-value=0.00045  Score=35.08  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             EEEeCCCcEEEEeeecCc-CCceeEEe
Q psy11568         90 FEFSNESGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C~~~g~-P~p~i~W~  115 (116)
                      ..+.+|+++.|.|.+.+. |.+.+.|+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~   36 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFF   36 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEE
Confidence            457889999999999755 66789997

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00057  Score=35.75  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecC-cCCce--eEEe
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQG-SPTPK--IEWL  115 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~p~--i~W~  115 (116)
                      +.+...+ ....+.+|+.+.|.|.+.| .|.|.  ++|+
T Consensus         5 ~~v~i~p-~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~   42 (103)
T d1iama1           5 ERVELAP-LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLL   42 (103)
T ss_dssp             SEEEECC-CCSEECTTSEEEEEEEEECCBCGGGEEEEEE
T ss_pred             CceEEeC-CCceEeCCCEEEEEEEecCCCCCCceEEEEc
Confidence            4444444 4456788999999999986 57664  5675

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00089  Score=35.52  Aligned_cols=23  Identities=13%  Similarity=0.375  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|...+..
T Consensus        82 sL~I~~v~~~------DsG~Y~C~v~~~~  104 (119)
T d1neua_          82 SIVIHNLDYS------DNGTFTCDVKNPP  104 (119)
T ss_dssp             CEEECSCCGG------GCEEEEEEEEC--
T ss_pred             EEEECCCChH------HCEEEEEEEEECC
Confidence            6999999766      9999999998754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0014  Score=34.30  Aligned_cols=23  Identities=13%  Similarity=0.291  Sum_probs=19.3

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .+|.|.+++.+      |+|.|.|.....
T Consensus        69 ~sL~I~~v~~~------D~G~Y~C~V~~~   91 (110)
T d1ncna_          69 WTLRLHNLQIK------DKGLYQCIIHHK   91 (110)
T ss_dssp             TEEEECSCCGG------GCEEEEEEEEEE
T ss_pred             EEEEECCCChh------HCEEEEEEEEec
Confidence            37999999766      999999997644

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00059  Score=35.65  Aligned_cols=23  Identities=13%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +|.|.+++.+      |+|.|.|...+..
T Consensus        66 sL~I~~v~~~------D~G~Y~C~V~~~~   88 (105)
T d1dr9a1          66 SIVILALRPS------DEGTYECVVLKYE   88 (105)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEECC
T ss_pred             EEEECcCChH------HCeEEEEEEEeCC
Confidence            7999999766      9999999987653

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00034  Score=36.11  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      +|.|.+++.+      |+|.|.|.+.+.
T Consensus        68 sL~I~~l~~~------DsG~Y~C~v~~~   89 (97)
T d2nxyb1          68 PLIIKNLKIE------DSDTYICEVEDQ   89 (97)
T ss_dssp             CEEECSCCGG------GCEEEEEEETTE
T ss_pred             EEEECCCChH------HCEEEEEEEecC
Confidence            5999999766      999999998764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0011  Score=34.34  Aligned_cols=24  Identities=8%  Similarity=0.203  Sum_probs=20.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .+.|.+++..      |+|.|+|...+...
T Consensus        63 ~F~l~~vt~~------~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          63 EFVIDHMDAN------KAGRYQCQYRIGHY   86 (99)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETTT
T ss_pred             EEEecCCCHH------HCceEEEEEECCCc
Confidence            5889999766      99999999988653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00053  Score=35.21  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .+..+.+|+.+.|.|.+.+ |.+.+.|++
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~   38 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLF   38 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEE
Confidence            4457889999999999866 668999973

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00017  Score=38.27  Aligned_cols=36  Identities=17%  Similarity=0.377  Sum_probs=26.2

Q ss_pred             CceEecCCCeEEEeCCCcEEEEeeecCcC-CceeEEeC
Q psy11568         80 PLFRIEPPYRFEFSNESGGRLDCAAQGSP-TPKIEWLI  116 (116)
Q Consensus        80 p~~~~~~~~~~~~~~g~~~~l~C~~~g~P-~p~i~W~~  116 (116)
                      |.++..+ ....+.+|+.+.|.|.+.|.| .+.+.|+.
T Consensus         7 Pp~i~~~-~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~   43 (115)
T d2crya1           7 PPIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSW   43 (115)
T ss_dssp             SCCEEEE-CCCCCCTTSCCCCCEEECCSSCCSEEEEES
T ss_pred             CCEEecC-CCEEEecCCEEEEEEEeecCCCeeEEEEee
Confidence            3344444 456678899999999999964 56788963

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0058  Score=30.20  Aligned_cols=39  Identities=13%  Similarity=0.178  Sum_probs=23.1

Q ss_pred             EEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          5 LWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         5 ~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .| +|+|+.+......   .......|..  .+      ++|.|.|.-.+.
T Consensus        32 rW-~K~gkvl~ed~~~---~~~tey~V~~--~D------~SGeY~CVFl~~   70 (80)
T d3b5ha2          32 RW-LKGGVVLKEDALP---GQKTEFKVDS--DD------QWGEYSCVFLPE   70 (80)
T ss_dssp             EE-ESSSEEEECTTCC---CSEEEEEECG--GG------CCEEEEEEEEST
T ss_pred             EE-eeCCEEccccCCC---CCceEEEEec--CC------CCceEEEEEcCC
Confidence            69 9999999753211   0011233332  33      899999996544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0017  Score=34.34  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+|.|.|.....
T Consensus        75 sL~I~~l~~~------DsG~Y~C~v~~~   96 (116)
T d1xeda_          75 VVNIAQLSQD------DSGRYKCGLGIN   96 (116)
T ss_dssp             EEEECSCCGG------GCEEEEEEESCG
T ss_pred             EEEEhhhCcC------CCEEEEEEEEcC
Confidence            6999999766      999999987644

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0011  Score=33.54  Aligned_cols=27  Identities=11%  Similarity=-0.005  Sum_probs=21.2

Q ss_pred             eEEEeCCCcEEEEeeecCc-CCceeEEe
Q psy11568         89 RFEFSNESGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        89 ~~~~~~g~~~~l~C~~~g~-P~p~i~W~  115 (116)
                      ...+.+|+++.|.|.+.+. |.+.+.|+
T Consensus         9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~   36 (89)
T d1f2qa2           9 AEVVMEGQPLFLRCHGWRNWDVYKVIYY   36 (89)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEE
T ss_pred             cCeEeCCCEEEEEEEecCCCCCeEEEEE
Confidence            3456789999999999776 45577786

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.0035  Score=32.75  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      +|.|.+++.+      |+|.|.|......
T Consensus        80 sL~I~~v~~~------DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          80 NLLLKDLKPE------DSGTYNFRFEISD  102 (118)
T ss_dssp             CEEECSCCGG------GCEEEEEEEECC-
T ss_pred             EEEECCCChh------HCEEEEEEEEeCC
Confidence            6999999766      9999999987654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00099  Score=34.71  Aligned_cols=23  Identities=17%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             CCCcEEEEeeecCcCCceeEEeC
Q psy11568         94 NESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        94 ~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .++...+.|.+.|.|.|.+.|++
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~   37 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFY   37 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEE
Confidence            57888899999999999999973

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0028  Score=33.28  Aligned_cols=50  Identities=14%  Similarity=0.046  Sum_probs=27.3

Q ss_pred             cEEEEEccCCeeeeccccceEEeeC------CeEEecCCCCCCCCCCCCceEEEEEEEcCCCc
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIALSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV   58 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~~~------~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~   58 (116)
                      +.|+| +++++.+...........+      ..|.+. ++++     .|...|+|.|++..+.
T Consensus        34 ~~i~W-~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~-----D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          34 LEIDL-LKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIE-----DIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EEEEE-EETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGG-----GTTCEEEEEEEECSCC
T ss_pred             eEEEE-eccCceeeccccccccccCCcceeeEEEEcc-CChH-----HCCcEEEEEEEcCcCC
Confidence            36899 8888887532111100111      124443 3333     2556899999988543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0032  Score=32.28  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .+.|.+|...      |+|.|+|...+..
T Consensus        58 ~F~i~~v~~~------~~G~Y~C~y~~~~   80 (95)
T d1olla1          58 KFYIPDMNSR------MAGQYSCIYRVGE   80 (95)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEETT
T ss_pred             EEEEeeeecC------CCceEEEEeCCCC
Confidence            5889999666      9999999987754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0026  Score=33.06  Aligned_cols=47  Identities=15%  Similarity=0.207  Sum_probs=27.2

Q ss_pred             EEEEEccCCeeeeccc-cceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++.... .......+++..+   ..+.      +.+.+.|+|......
T Consensus        37 ~v~W-~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~------~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          37 EVDL-LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT------PTEKDEYACRVNHVT   87 (100)
T ss_dssp             EEEE-EETTEECTTCEECCCEECTTSCEEEEEEEEEC------CCSSCCEEEEEECTT
T ss_pred             EEEE-EECCEecCCccccceecCCCCcEEEEEEeEEC------CCCCCEEEEEEEeCC
Confidence            6899 99999885321 1112233443222   2232      236779999998864

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0028  Score=33.03  Aligned_cols=26  Identities=23%  Similarity=0.610  Sum_probs=22.6

Q ss_pred             EEEeCCCcEEEEe------eecCcCCceeEEe
Q psy11568         90 FEFSNESGGRLDC------AAQGSPTPKIEWL  115 (116)
Q Consensus        90 ~~~~~g~~~~l~C------~~~g~P~p~i~W~  115 (116)
                      +.+..|....|.|      .+.++|.|.++|+
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~   40 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWY   40 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEE
Confidence            4567799999999      6789999999997

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0099  Score=30.89  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |+|.|.|......
T Consensus        71 ~L~I~~l~~~------DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          71 TVTMTDLREE------DSGHYWCRIYRPS   93 (108)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECTT
T ss_pred             EEEEhhhCCC------CCEEEEEEEecCC
Confidence            5999999766      9999999877553

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.04  E-value=0.0057  Score=31.56  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             EEEEEccCCeeeeccc--cceEEeeCCeEE---ecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK--DLRIALSNGSLM---FPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~--~~~~~~~~~~l~---i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.++....  .......+++..   ...+.      ..+...|+|.+....
T Consensus        36 ~v~W-~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~------~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          36 EVRW-FRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETV------PRSGEVYTCQVEHPS   87 (98)
T ss_dssp             EEEE-EETTEECCSSEEECCCEECSSSCEEEEEEEECC------CCTTCEEEEEEECTT
T ss_pred             EEEE-EECCEEcCCCCEECeEEeCCCcEEEEEEEeeEc------CCCCCEEEEEEEECC
Confidence            6899 89998885321  111222233322   22332      236789999998864

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0025  Score=33.10  Aligned_cols=22  Identities=23%  Similarity=0.643  Sum_probs=18.5

Q ss_pred             CCcEEEEeeecCcCCceeEEeC
Q psy11568         95 ESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        95 g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      +....+.|.+.|.|.|.+.|++
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~   38 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLH   38 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEE
T ss_pred             EEEEEEEEEEEEeCCCeEEEEe
Confidence            4556788999999999999973

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.98  E-value=0.011  Score=30.71  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=25.7

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|.........+.|+
T Consensus         6 QsP-~~l~v~~G~svtl~C~~s~~~~~~~~WY   36 (107)
T d1kcvl1           6 QSP-KSMGMSVGEAVTLNCKASENVGTYVSWY   36 (107)
T ss_dssp             ESC-SEEEEETTCCEEEEEEESSCCTTCEEEE
T ss_pred             CcC-CEEeECCCCCEEEEEEecCCcCCceEEE
Confidence            444 7788889999999999887777779997

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.014  Score=29.19  Aligned_cols=17  Identities=29%  Similarity=0.606  Sum_probs=11.6

Q ss_pred             CceEEEEEEEcCCCceEEEE
Q psy11568         44 HSTVYRCRASNEAGVILSRF   63 (116)
Q Consensus        44 d~G~y~C~a~n~~g~~~~~~   63 (116)
                      |+|.|+|. .+  |...+.+
T Consensus        62 ~aGnYTCh-k~--g~~Lnht   78 (87)
T d3d85d1          62 DAGQYTCH-KG--GEVLSHS   78 (87)
T ss_dssp             GCEEEEEE-ET--TEEEEEE
T ss_pred             CCcceeEe-CC--CcEeeeE
Confidence            89999996 32  5555543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0038  Score=32.59  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=20.0

Q ss_pred             eCCCcEEEEeeecCcCCceeEEeC
Q psy11568         93 SNESGGRLDCAAQGSPTPKIEWLI  116 (116)
Q Consensus        93 ~~g~~~~l~C~~~g~P~p~i~W~~  116 (116)
                      .+++...+.|.+.|.|.|.+.|++
T Consensus        13 ~~~~~~ci~~~v~G~P~P~v~W~~   36 (107)
T d1he7a_          13 VEMHHWCIPFSVDGQPAPSLRWLF   36 (107)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEE
T ss_pred             eEEEEEEEEEEEEEecCCeEEEEE
Confidence            445677788999999999999973

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0038  Score=33.19  Aligned_cols=22  Identities=14%  Similarity=0.096  Sum_probs=19.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      +|.|.+++.+      |+|.|.|.....
T Consensus        84 sL~I~~v~~~------DsG~Y~C~v~~~  105 (121)
T d2g5ra1          84 TLSIRDARMS------DAGRYFFRMEKG  105 (121)
T ss_dssp             CEEECSCCGG------GCEEEEEEEEET
T ss_pred             EEEECCCChH------HCEEEEEEEEeC
Confidence            6999999766      999999998654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0052  Score=31.48  Aligned_cols=46  Identities=13%  Similarity=0.416  Sum_probs=26.1

Q ss_pred             EEEEEccCCeeeeccc-c-ceE-EeeCCeE---EecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVK-D-LRI-ALSNGSL---MFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~-~~~-~~~~~~l---~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|+| ++||+++.... . ... ...+++.   ..-.+.      ..+.+.|+|.+.+.
T Consensus        33 ~v~W-~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~------~~~~~~ytC~V~H~   84 (94)
T d1de4a1          33 TMKW-LKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP------PGEEQRYTCQVEHP   84 (94)
T ss_dssp             EEEE-EETTEECCGGGSCCCEEEECTTSCEEEEEEEEEC------TTCGGGEEEEEECT
T ss_pred             EEEE-EECCEECccCcccccceEeCCCceEEEEEEEEEC------CCCCCEEEEEEEeC
Confidence            6899 99999985421 1 111 1222221   222332      22677899999886

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.74  E-value=0.014  Score=30.36  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=23.8

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+.+.+|+++.|.|.........+.|+
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~~~~~WY   35 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIKKYIGWY   35 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCCeEEE
Confidence            6778889999999998877766678896

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0061  Score=31.48  Aligned_cols=29  Identities=14%  Similarity=0.155  Sum_probs=24.5

Q ss_pred             CeEEEeCCCcEEEEeeec-CcCCceeEEeC
Q psy11568         88 YRFEFSNESGGRLDCAAQ-GSPTPKIEWLI  116 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~-g~P~p~i~W~~  116 (116)
                      ....+.+|+.+.|.|.+. +.|.+.++|+.
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k   39 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYK   39 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEEC
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEE
Confidence            566777899999999885 67999999974

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.67  E-value=0.016  Score=30.32  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=25.4

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+..|+++.|.|..+.....-+.|+
T Consensus         6 Q~P-~s~~~~~G~svtl~C~~s~~~~~~~~Wy   36 (107)
T d1c5cl1           6 QSP-SSLSASLGERVSLTCRTSQEISGYLSWL   36 (107)
T ss_dssp             EEC-SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             ccC-CEEEECCCCCEEEEEEeCCCCCCCEEEE
Confidence            444 6778888999999999887777778897

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.67  E-value=0.0041  Score=31.68  Aligned_cols=47  Identities=13%  Similarity=0.158  Sum_probs=25.7

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.++...........+++..+   -.+..      .+...|+|.+....
T Consensus        33 ~v~W-~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~------~~~~~ytC~V~H~s   82 (91)
T d3frua1          33 KFRF-LRNGLASGSGNCSTGPNGDGSFHAWSLLEVKR------GDEHHYQCQVEHEG   82 (91)
T ss_dssp             EEEE-EETTEECCCCEEEEEECSSSCEEEEEEEEEET------TCGGGEEEEEECTT
T ss_pred             EEEE-EECCEeCCccCccceecCCCCEeEEEEEEECC------CCCCEEEEEEEeCC
Confidence            6899 899988754221112223333221   12222      26678999988763

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=95.64  E-value=0.0072  Score=31.37  Aligned_cols=47  Identities=11%  Similarity=0.191  Sum_probs=25.6

Q ss_pred             EEEEEccCCeeeeccccc--eEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL--RIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~--~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++......  .....+++..+   -.+.      ..+...|+|.+....
T Consensus        37 ~v~W-~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~------~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          37 NVTW-LRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL------PSTDDFYDCEVDHWG   88 (101)
T ss_dssp             EEEE-EETTEEECSSEEECCCEECSSSCEEEEEEEEEC------CCTTCCEEEEEECTT
T ss_pred             EEEE-EECCeecCCCcEeCeEEECCCCcEEEEEEeEEc------CCCCCEEEEEEEECC
Confidence            6899 9999988642111  11122332211   1222      225668999998863

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.61  E-value=0.012  Score=30.64  Aligned_cols=31  Identities=10%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+..|+++.|.|.........+.|+
T Consensus         6 QsP-~slsv~~G~svtl~C~~s~~~~~~~~WY   36 (106)
T d1i8ka_           6 QSP-ASLSVATGEKVTIRCMTSTDIDDDMNWY   36 (106)
T ss_dssp             EEC-SEEECCTTCCEEEEEEESSCCTTCEEEE
T ss_pred             eeC-CEEEECCCCCEEEEEEeCCCCCccEEEE
Confidence            444 6778889999999998877666678997

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=95.61  E-value=0.0046  Score=32.11  Aligned_cols=47  Identities=15%  Similarity=0.312  Sum_probs=26.0

Q ss_pred             EEEEEccCCeeeeccc--cceEEeeCCeEE---ecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK--DLRIALSNGSLM---FPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~--~~~~~~~~~~l~---i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++....  .......+++..   .-.+..      .+.+.|+|.+....
T Consensus        35 ~v~W-~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~------~~~~~ytC~V~H~s   86 (100)
T d1muja1          35 NITW-LRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP------SDDDIYDCKVEHWG   86 (100)
T ss_dssp             EEEE-EESSSBCCSSEEECCCEECTTSCEEEEEEEEECC------CTTCCEEEEEECTT
T ss_pred             EEEE-EeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC------CCCCEEEEEEEECC
Confidence            6899 89998886321  111122233211   122222      26778999999863

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.61  E-value=0.017  Score=30.10  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.+.| ..+.+.+|+++.|.|.....-...+.|+
T Consensus         4 ~tQ~P-~sl~~~~G~svtL~C~~s~~~~~~~~WY   36 (107)
T d1tjgl1           4 LTQSP-SSLSASVGDRITITCRASQGVTSALAWY   36 (107)
T ss_dssp             EEEEC-SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             EEeeC-CEEEECCCCCEEEEEEECCCCCccEEEE
Confidence            34445 6788889999999999876667788896

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.014  Score=29.93  Aligned_cols=47  Identities=15%  Similarity=0.284  Sum_probs=26.7

Q ss_pred             EEEEEccCCeeeeccccce-EEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLR-IALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~-~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.++....... ....+++..+   -.+.      ..+.+.|+|.+....
T Consensus        36 ~V~W-~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~------~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          36 EIQM-LKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT------PTETDTYACRVKHDS   86 (99)
T ss_dssp             EEEE-EETTEECTTCEEEEEEECTTCCEEEEEEEEEC------CCSSCCEEEEEECTT
T ss_pred             EEEE-eeCCeecCCcEECceeECCCCCEEEEEEeEec------CcCCCEEEEEEEeCC
Confidence            6899 99999886422211 1222333222   2222      226678999988763

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0079  Score=29.78  Aligned_cols=42  Identities=14%  Similarity=0.445  Sum_probs=26.4

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| +++|..+....     ..+.++-+-+...+      .-|.|.|.+....
T Consensus        30 ~i~W-~kdg~~i~~~~-----~~~ktlnLG~~~~D------PRG~Y~C~~~~~~   71 (81)
T d1sy6a1          30 NITW-FKDGKMIGFLT-----EDKKKWNLGSNAKD------PRGMYQCKGSQNK   71 (81)
T ss_dssp             EEEE-EETTEEEEEEE-----SSCCCEEEEEGGGC------CEEEEEEESSSSC
T ss_pred             EEEE-ecCCeEeeccc-----CCcceeecCCcccC------CCcceEcCCCCcC
Confidence            6899 99988765211     12335556555444      5799999875543

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.50  E-value=0.0084  Score=30.96  Aligned_cols=46  Identities=13%  Similarity=0.278  Sum_probs=25.3

Q ss_pred             EEEEEccCCeeeeccc--cceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVK--DLRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~--~~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|+| ++||+++....  .......+++..+   -.+.      ..+...|+|.+...
T Consensus        37 ~v~W-~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~------~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          37 NITW-LSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL------PSADEIYDCKVEHW   87 (99)
T ss_dssp             EEEE-EETTEEECTTEEECCCEECTTSCEEEEEEEEEC------CCTTCCEEEEEECT
T ss_pred             EEEE-EECCEeccCCcEecceEECCCCCEEEEEEEEEc------CCCCCEEEEEEEeC
Confidence            5899 89999886421  1111222333211   2222      22567899999876

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.42  E-value=0.022  Score=29.68  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=25.1

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|........-+.|+
T Consensus         6 Q~P-~sl~~~~G~svtl~C~~s~~~~~~~~WY   36 (107)
T d1d5il1           6 QSP-SSMYASLGERVTITCKASQDINSYLSWF   36 (107)
T ss_dssp             EEC-SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             eeC-CEEEECCCCCEEEEEEcCCCCCCcccee
Confidence            444 6778889999999999877777778886

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.41  E-value=0.021  Score=29.83  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=25.0

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|.........+.|+
T Consensus         6 Q~P-~~l~~~~G~svtL~C~~s~~~~~~~~WY   36 (108)
T d1jhll_           6 QSP-SYLVASPGETITINCRASKSISKSLAWY   36 (108)
T ss_dssp             EEC-SEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred             ccC-CeEEecCCCCEEEEEEccCCcCCceEEE
Confidence            344 6778888999999999887667778896

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.41  E-value=0.007  Score=31.86  Aligned_cols=23  Identities=22%  Similarity=0.236  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        75 ~L~I~~~~~~------Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          75 NFTITASQVV------DSAVYFCALSGFY   97 (114)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECSB
T ss_pred             EEeecccccc------cCCCceEeCCCCC
Confidence            5999999666      9999999876654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.36  E-value=0.023  Score=29.51  Aligned_cols=31  Identities=19%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|.....-...+.|+
T Consensus         6 Q~p-~~l~v~~G~~vtL~C~~~~~~~~~~~WY   36 (107)
T d1j1pl_           6 QSP-ATLSVTPGNSVSLSCRASQSIGNNLHWY   36 (107)
T ss_dssp             EEC-SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             CcC-CeEEECCCCCEEEEEEecCCCCcceEEE
Confidence            344 6778889999999998876667778997

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.0072  Score=32.35  Aligned_cols=21  Identities=19%  Similarity=0.409  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        83 ~L~I~~~~~~------Dsg~YyCa~~~  103 (122)
T d1nezg_          83 VLTLNKFSKE------NEGYYFCSVIS  103 (122)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEE
T ss_pred             EEEEcccccC------CCEEEEeeEeC
Confidence            5999999766      99999998654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.032  Score=28.36  Aligned_cols=45  Identities=11%  Similarity=0.157  Sum_probs=26.2

Q ss_pred             cEEEEEccCCeeeeccccceEEe-eCCe------EEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          2 YVLLWLIRDNTVIAYVKDLRIAL-SNGS------LMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~~~~~~~~-~~~~------l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      |.|+| ++||+.+.......... .++.      |.+.   .      .+...|+|.+.+..
T Consensus        32 ~~V~W-~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~------~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          32 PHLSW-LENGEELNAINTTVSQDPETELYAVSSKLDFN---M------TTNHSFMCLIKYGH   83 (95)
T ss_dssp             EEEEE-EESSCEECCSEEEEEECTTTCCEEEEEEEEEE---T------TSCEEEEEEEEETT
T ss_pred             CEEEE-ecCCcEecccceeeEecCCCccEEEEEEEEcc---C------CccceEEEEEEecC
Confidence            68999 88998886421111111 1232      3332   1      25679999998874

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.064  Score=27.43  Aligned_cols=32  Identities=16%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCCCceE
Q psy11568         23 ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL   60 (116)
Q Consensus        23 ~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g~~~   60 (116)
                      .+.+|+|.|..+.+.      |+|.|.-.+-++-|...
T Consensus        59 i~~nGtLkIK~L~~~------d~GtYkv~vYd~~Gk~v   90 (101)
T d1hnfa1          59 LFKNGTLKIKHLKTD------DQDIYKVSIYDTKGKNV   90 (101)
T ss_dssp             ECTTSCEEECSCCGG------GCEEEEEEEEETTSCEE
T ss_pred             EccCCcEEeeeeeec------CCCcEEEEEEcCCCcEe
Confidence            567889999999766      99999999999988765

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.27  E-value=0.026  Score=29.51  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|.........+.|+
T Consensus         6 QsP-~~l~~~~G~svtL~C~~s~~~~~~i~WY   36 (109)
T d1mqkl_           6 QTP-VSLSASVGETVTITCRASENIYSYLAWY   36 (109)
T ss_dssp             EEC-SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             CcC-CEEEECCCCCEEEEEEeCCCcCccccee
Confidence            444 6778888999999999876666778997

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.27  E-value=0.026  Score=29.42  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=26.2

Q ss_pred             eEecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         82 FRIEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        82 ~~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.+.| ..+.+.+|+++.|.|...+.-...+.|+
T Consensus         6 ltQsP-~~l~~~~G~svtL~C~~s~~~~~~~~WY   38 (109)
T d1bwwa_           6 MTQSP-SSLSASVGDRVTITCQASQDIIKYLNWY   38 (109)
T ss_dssp             EEEEC-SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             EEeeC-CEEEECCCCCEEEEEEecCCCCCcceEe
Confidence            34445 6788889999999999887666678897

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.25  E-value=0.024  Score=29.53  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=23.7

Q ss_pred             CCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         87 PYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        87 ~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      |..+.+..|+++.|.|.....-...+.|+
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WY   36 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWF   36 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEE
Confidence            36778888999999998776666678897

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.23  E-value=0.023  Score=29.51  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=23.6

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+.+.+|+++.|.|...+.-...+.|+
T Consensus         8 ~sl~~~~G~svtL~C~~~~~~~~~~~WY   35 (106)
T d1op3k1           8 STLSASVGDTITITCRASQSIETWLAWY   35 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSCCTTCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCcEEEE
Confidence            6788889999999998877666678897

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.16  E-value=0.013  Score=30.63  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=18.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|+|.|.+.+..
T Consensus        72 ~L~I~~l~~~------Dsa~YyCa~~~~~   94 (107)
T d1c5cl1          72 SLTISSLESE------DFADYYCLQYASF   94 (107)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSSS
T ss_pred             EEEEhhhccc------CCeEEEEecCcCC
Confidence            6999999766      9999999866543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.15  E-value=0.027  Score=29.28  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=23.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+.+.+|+++.|.|...+.-...+.|+
T Consensus         9 ~~ltv~~G~svtl~C~~s~~~~~~~~WY   36 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASEDIYSRLAWY   36 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEE
T ss_pred             CEEEECCCCCEEEEEecCCCcccccEEE
Confidence            6788888999999998877665678897

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.14  E-value=0.0089  Score=31.49  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      +|.|.++..+      |+|.|.|.+...
T Consensus        73 sL~i~~~~~~------Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          73 SLHITASQLS------DSASYICVVSDR   94 (114)
T ss_dssp             EEEECSCCGG------GCSEEEEEEECS
T ss_pred             ccEEcccChh------hCcccceeeecC
Confidence            5999999766      999999998875

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.13  E-value=0.036  Score=28.73  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=18.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.+..
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~~   94 (106)
T d1i8ka_          72 VFTIENTLSE------DVGDYYCLQSFNV   94 (106)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSS
T ss_pred             eecccCCccc------cCEEEeEecCccc
Confidence            6999999766      9999999866543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.10  E-value=0.022  Score=29.54  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|+|.|.+...
T Consensus        72 ~L~I~~l~~~------DSa~YyCa~~~~   93 (107)
T d1kcvl1          72 TLTISSVQAD------DDADYYCGQSYS   93 (107)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             ecEEHhheec------CCceEEEEecCC
Confidence            6999999766      999999987544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.05  E-value=0.011  Score=29.99  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        58 sL~I~~~~~~------Dsg~YyCa~~~~   79 (94)
T d2gj6d1          58 SLLIRDSQPS------DSATYLCAVTTD   79 (94)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESS
T ss_pred             eEEeeccccC------cCccceeeEecC
Confidence            5999999666      999999987654

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.017  Score=28.84  Aligned_cols=41  Identities=15%  Similarity=0.485  Sum_probs=24.9

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|+| +++|..+.....     ...++-+-+...+      .-|.|.|.+...
T Consensus        35 ~i~W-~kdg~~i~~~~~-----~~ktlnLG~~~~D------PRGiY~C~g~~~   75 (86)
T d1jbja1          35 TIKW-LKDGSIISPLNA-----TKNTWNLGNNAKD------PRGTYQCQGAKE   75 (86)
T ss_dssp             CEEE-EETTEECCCSSC-----CSSCCEEEETTSC------CEEEEEEEESSC
T ss_pred             EEEE-ecCCceeccccc-----ccceeecCCcccC------CCcceEcCCCcc
Confidence            5889 888887653211     1124445444433      579999986654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.96  E-value=0.017  Score=29.67  Aligned_cols=47  Identities=6%  Similarity=0.166  Sum_probs=26.1

Q ss_pred             EEEEEccCCeeeecccc--ceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD--LRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~--~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+.+.....  ......+++..+   -.+..      .+...|+|.+....
T Consensus        35 ~v~W-~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~------~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          35 TITW-RKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTP------SYGDTYTCVVEHIG   86 (98)
T ss_dssp             EEEE-EETTEECCCCCSBCCCEECSSSCEEEEEEEEECC------CTTCCEEEEEECTT
T ss_pred             EEEE-EECCEeccCCeEeCceEECCCCCEEEEEEeEcCC------CCCCEEEEEEEeCC
Confidence            6899 999998854211  111222333221   12322      25668999999874

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.95  E-value=0.011  Score=31.16  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        74 ~L~I~~~~~~------Dsg~YyCa~~~~   95 (115)
T d1i9ea_          74 HLRKASVHWS------DSAVYFCAVSGF   95 (115)
T ss_dssp             CEEESSCCGG------GCEEEEEEEEET
T ss_pred             EEeccccccc------ccceecccccCC
Confidence            6999999766      999999986643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.94  E-value=0.013  Score=30.74  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        73 ~L~i~~~~~~------Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          73 TLYIAASQPG------DSATYLCAVRPTS   95 (113)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEESS
T ss_pred             EeeeecCCCC------CCcEEeEeEecCC
Confidence            6999999766      9999999987654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.93  E-value=0.021  Score=29.70  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+.+.
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~   93 (107)
T d1j1pl_          72 TLSINSVETE------DFGMYFCQQANS   93 (107)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             EEEEcccCcC------CCEEEEEEcCCC
Confidence            6999999766      999999976544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=0.014  Score=30.71  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=18.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        74 ~L~I~~~~~~------Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          74 HMNILDTRRN------DSGIYLCGAISLH   96 (114)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECSS
T ss_pred             EEEECccCcC------CCeEEEEEEEeCC
Confidence            4899999766      9999999876543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.87  E-value=0.01  Score=30.96  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=24.5

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|..+......+.|+
T Consensus         6 QsP-~s~~~~~G~~vtl~C~~s~~~~~~~~WY   36 (107)
T d3cx5k1           6 QTP-VSLAASLGDRVTISCRASQDINNFLNWY   36 (107)
T ss_dssp             EES-TTCCBCSSSCCEEEEEESSCCTTCEEEE
T ss_pred             CcC-CEEEECCCCCEEEEEEcCCCcCCCeEEE
Confidence            344 5566778999999999877777778997

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.86  E-value=0.018  Score=30.04  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~~   94 (107)
T d1ospl1          72 TLSITSLQTE------DVATYFCQQYWSP   94 (107)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSSS
T ss_pred             EeEEcccccc------cCCcEEEeeccCC
Confidence            6999999766      9999999876543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.83  E-value=0.013  Score=30.78  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=18.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        80 ~L~I~~~~~~------Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          80 FLSIMNVKPE------DSDFYFCATVGS  101 (115)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECS
T ss_pred             EEeecccCCC------CCcEEEEeEcCC
Confidence            5999999766      999999987543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.012  Score=30.94  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        78 ~L~I~~l~~~------Dsg~YyCa~~~~   99 (114)
T d1akjd_          78 VLTLSDFRRE------NEGYYFCSALSN   99 (114)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEET
T ss_pred             hcEEccCCCC------CCEEEeEeEcCC
Confidence            5999999766      999999997654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.011  Score=31.02  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.....
T Consensus        77 ~Lti~~l~~~------Dsg~Y~Cav~~~   98 (113)
T d1smoa_          77 RVRMVNLQVE------DSGLYQCVIYQP   98 (113)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCT
T ss_pred             EEEEccCCcc------cCceEEEEEECC
Confidence            4899999766      999999987544

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=94.80  E-value=0.023  Score=29.09  Aligned_cols=47  Identities=13%  Similarity=0.234  Sum_probs=25.7

Q ss_pred             EEEEEccCCeeeeccc--cceEEeeCCeEE---ecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK--DLRIALSNGSLM---FPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~--~~~~~~~~~~l~---i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++....  .......+++..   .-.+..      .+...|+|.+....
T Consensus        34 ~v~W-~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~------~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          34 KVRW-FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTP------QRGDVYTCHVEHPS   85 (97)
T ss_dssp             EEEE-EETTEEECTTEEECCCEECSSSCEEEEEEEECCS------CTTCCEEEEEECTT
T ss_pred             EEEE-EECCEEcCCCcEeceeecCCCceEEEEEEeccCC------CCCCEEEEEEEeCC
Confidence            5899 89998875321  111122233211   222322      25679999998863

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.74  E-value=0.04  Score=28.48  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=23.5

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+.+.+|+++.|.|...+.-...+.|+
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WY   35 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWY   35 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEE
Confidence            3678889999999999987666778896

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.69  E-value=0.03  Score=28.81  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        69 ~L~I~~l~~~------Dsa~YyCA~~~~~   91 (103)
T d8faba1          69 TLTISGVQAE------DEADYYCQAWDNS   91 (103)
T ss_dssp             EEEETTCCGG------GCEEEEEEEEETT
T ss_pred             CceEcCcchh------HCceEEeeecCCC
Confidence            6899999666      9999999866543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.69  E-value=0.06  Score=28.25  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.++..+      |+|.|.|.+....+
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~~~   95 (115)
T d1ogad1          72 SLHITAAQPG------DTGLYLCAGAGSQG   95 (115)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECTTS
T ss_pred             eeeecCCCcc------ceeeEcccccCCCC
Confidence            5999999766      99999998775543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.67  E-value=0.029  Score=29.28  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+.+..
T Consensus        72 ~L~i~~l~~~------Dsa~YyCA~~~~~   94 (108)
T d1jhll_          72 TLTISSLEPE------DFAMYICQQHNEY   94 (108)
T ss_dssp             EEEECSCCTT------CCSEEEEEECSSS
T ss_pred             EeEeeeeEec------cceEEEEeeCCCc
Confidence            6999999665      9999999766543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.64  E-value=0.018  Score=30.23  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=18.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          72 TLHIRDAQLE------DSGTYFCAAEASS   94 (113)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSS
T ss_pred             EEEECCCCHh------HCEEEEEEecCCC
Confidence            5899999766      9999999877543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.033  Score=28.03  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             cEEEEEccCCeeeecc-ccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          2 YVLLWLIRDNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         2 p~v~W~~~~g~~~~~~-~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      ..|.| .+++..+... ...........|.+.+.+.-     .++|-|.|.+...
T Consensus        23 ~~i~W-~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~-----e~sGyY~C~~~~~   71 (91)
T d1xiwa_          23 SEILW-QHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL-----EQSGYYVCYPRGS   71 (91)
T ss_dssp             SCEEE-EETTEEESSSCSCTTEEEETTEEEETTCCHH-----HHCEEEEEEETTS
T ss_pred             Cceee-eeccccccCCCcccccccccceEEecccCcc-----ccCceEEEEcCCC
Confidence            46899 8888777532 11122334456788777531     3899999998654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=94.63  E-value=0.015  Score=30.64  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=18.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        67 ~L~I~~l~~~------Dsa~YyCa~~~~   88 (113)
T d1vesa_          67 SLRISDLRVE------DSGTYKCQAFYS   88 (113)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEE
T ss_pred             eeeecccccC------CcceEeeeeecc
Confidence            6999999766      999999997654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.63  E-value=0.018  Score=30.34  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=18.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|......
T Consensus        77 ~L~I~~~~~~------Dsg~YyCa~~~~~   99 (116)
T d1tvda_          77 HLVISPVRTE------DSATYYCAFTLPP   99 (116)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECTT
T ss_pred             eeeecCcccc------ccccceeeEecCC
Confidence            5899999766      9999999876543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.59  E-value=0.023  Score=29.77  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=18.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+.+.
T Consensus        76 ~L~I~~~~~~------Dsa~YyCa~~~~   97 (111)
T d1j05a_          76 TLIIDPVEAD------DVATYYCQQTNE   97 (111)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             EEEEcccccc------cCccEEEeecCC
Confidence            6999999766      999999987654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.018  Score=29.21  Aligned_cols=50  Identities=16%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             EEEEEccCCeeeeccccceE-EeeCCeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~-~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||..+........ ...+++..+......   ...+...|+|.+....
T Consensus        33 ~v~W-~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          33 DVHW-TRAGEVQEPELRGDVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             EEEE-EETTEECCCSEEEEEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEETT
T ss_pred             EEEE-EECCEECCCcEEeeeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEECC
Confidence            6899 999988753211111 122333222111111   1226678999988763

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.53  E-value=0.016  Score=30.45  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        74 ~L~I~~~~~~------Dsa~YyCa~~~~   95 (115)
T d1j8hd1          74 HLTKPSAHMS------DAAEYFCAVSES   95 (115)
T ss_dssp             CEEESSCCGG------GCEEEEEEEESS
T ss_pred             EEeecccccc------CCccceeeecCC
Confidence            5999999766      999999998765

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.48  E-value=0.021  Score=29.81  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        70 ~L~I~~~~~~------Dsa~YyCa~~~~   91 (110)
T d2esvd1          70 TLILPHATLR------DTAVYYCIVVRS   91 (110)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEES
T ss_pred             eehhcccccC------CceEEEEEEeCC
Confidence            5999999666      999999987543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.46  E-value=0.04  Score=28.80  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |++.|.|.+....
T Consensus        76 ~L~I~~~~~~------DsA~YyCa~~~~~   98 (111)
T d2gsia1          76 TLNIHPVEEE------DAATYYCSHIREL   98 (111)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSS
T ss_pred             hccccccccc------CCceEEEEECCCC
Confidence            6999999766      9999999765543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=94.46  E-value=0.017  Score=30.37  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=19.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|+|.|.+....
T Consensus        66 ~L~I~~l~~~------Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          66 SLRINDLTVE------DGGTYRCGLGVAG   88 (112)
T ss_dssp             EEEECSCCGG------GCEEEEEEECBTT
T ss_pred             eeEecCCcCc------cCEEEeEEEecCC
Confidence            6999999766      9999999877654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.46  E-value=0.04  Score=28.88  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|+|.|...+..
T Consensus        77 ~L~I~~~~~e------DsAvYYC~~~~~~   99 (112)
T d1ncwl1          77 TLKISRVEAE------DLGVYYCWQGTHF   99 (112)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSSS
T ss_pred             EEEECccccC------cCEeEEEEcCCCc
Confidence            5999999766      9999999654443

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.44  E-value=0.0068  Score=31.07  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.++..+      |+|.|.|.+....|
T Consensus        65 ~L~I~~~~~~------Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          65 SLLITASRAA------DTASYFCATDTTSG   88 (96)
T ss_dssp             CBCCSSCCST------TCSCCEEEEEETTS
T ss_pred             ccCcCCCCcc------cCEEEeEeEecCCC
Confidence            5889999666      99999998776544

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.047  Score=27.80  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      ...|.+++.+      |+|.|+|......
T Consensus        57 ~F~l~~v~~~------~~G~Y~C~y~~~~   79 (96)
T d1ucta2          57 NFSLGPVDLN------VSGIYRCYGWYNR   79 (96)
T ss_dssp             EEECCSCCGG------GCEEEEEEEECTT
T ss_pred             EEEEeccccc------cCcEEEEEEEcCC
Confidence            5778888665      9999999887653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.35  E-value=0.034  Score=28.79  Aligned_cols=47  Identities=15%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             EEEEEccCCeeeeccccc-eEEeeCCeEEec---CCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL-RIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i~---~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||..+...... .....+++..+.   .+..      .|...|+|.+....
T Consensus        36 ~V~W-~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~------~~~~~ytC~V~H~~   86 (103)
T d1hdma1          36 TVNW-HDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP------EPSDIFSCIVTHEP   86 (103)
T ss_dssp             EEEE-EETTEECSSCCCEEEEEETTTEEEEEEEEEECC------CTTCCEEEEEEETT
T ss_pred             EEEE-EECCeecCCcEeceEEeCCCCcEEEEEEEEEec------CCCCEEEEEEEeCC
Confidence            5889 9999887532221 122234432221   2222      25668999998873

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.30  E-value=0.024  Score=29.67  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=19.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|+|.|.+.+..
T Consensus        74 ~L~I~~l~~~------Dsa~YyCa~~~~~   96 (112)
T d1lgva1          74 SLTISGLQAE------DEADYYCSSYDGS   96 (112)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSS
T ss_pred             eEEeCcCccc------cCEEEEEeeecCC
Confidence            6999999766      9999999887654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=94.30  E-value=0.029  Score=29.15  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        73 ~L~I~~~~~~------Dsa~YyCa~~~~   94 (108)
T d2fx7l1          73 TLTISRLEPE------DFAVYYCQQYGQ   94 (108)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSS
T ss_pred             EEEehHheec------ccEEEeeecCCC
Confidence            5999999666      999999986543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.29  E-value=0.015  Score=30.27  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=18.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~   93 (110)
T d1u3ha1          72 SLHIADSQPG------DSATYFCAASAN   93 (110)
T ss_dssp             EEEESSCCTT------SCSEEEECCEES
T ss_pred             EeEeccCCCC------CceeEeeeecCC
Confidence            5999999666      999999987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.28  E-value=0.025  Score=29.62  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|......
T Consensus        74 ~L~I~~~~~~------Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          74 GLIITATQIE------DSAVYFCAMRGDY   96 (115)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECCC
T ss_pred             EEEECCCCcc------ccccccceeecCC
Confidence            5999999766      9999999876543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.28  E-value=0.037  Score=28.63  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        71 ~L~I~~~~~~------Dsa~YyCa~~~   91 (106)
T d1lk3l1          71 TLTIDPVEAD------DTAIYFCQQSW   91 (106)
T ss_dssp             EEEESSCCGG------GCEEEEEEECS
T ss_pred             EeEECCcChh------hCCCccccccc
Confidence            6999999766      99999997554

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.19  E-value=0.031  Score=29.03  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=18.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+++|.|.+...
T Consensus        72 ~L~I~~~~~~------DsA~YyCa~~~~   93 (107)
T d1mexl1          72 TLTINNVQSE------DLAEYFCQQYNS   93 (107)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSS
T ss_pred             eeeechhhee------cceeEEEeECCC
Confidence            5999999766      999999986543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.13  E-value=0.041  Score=28.53  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|+|.|.+...
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~~   93 (107)
T d1d5il1          72 SLTISSLEYE------DMGIYYCLQYDE   93 (107)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             EccccccCCc------CCEEEEeeeccC
Confidence            6999999766      999999976544

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.11  E-value=0.02  Score=29.97  Aligned_cols=21  Identities=19%  Similarity=0.263  Sum_probs=17.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        72 ~L~I~~~~~~------DSa~YyCA~~~   92 (109)
T d1mqkl_          72 SLKINSLLPE------DFGSYYCQHHY   92 (109)
T ss_dssp             EEEESSCCGG------GCEEEEEEECS
T ss_pred             EEEEcccccc------CCeeEEEeeeC
Confidence            5999999766      99999998664

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=94.11  E-value=0.03  Score=29.12  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|+|.|.+...
T Consensus        72 ~L~I~~l~~~------DsA~YyCa~~~~   93 (107)
T d1tjgl1          72 TLTISTLRPE------DFATYYCQQLHF   93 (107)
T ss_dssp             EEEESSCCGG------GCSEEEEEECSB
T ss_pred             EEEeccceeC------cCceEEEEECcC
Confidence            5999999766      999999975543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.04  E-value=0.088  Score=27.28  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        74 ~L~i~~~~~~------Dsa~YyCa~~~~   95 (111)
T d2esve1          74 TLKVQPAELE------DSGVYFCASSQD   95 (111)
T ss_dssp             EEEESSCCGG------GCEEEEEEEESS
T ss_pred             EEEECCcccC------CCceEEEeeeCC
Confidence            6999999766      999999986644

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.98  E-value=0.029  Score=29.50  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        74 ~L~I~~~~~~------Dsg~YyCa~~~~   95 (115)
T d1lp9e1          74 HLQKSSAQLS------DSALYYCALFLA   95 (115)
T ss_dssp             CEEESSCCGG------GCEEEEEEEEEC
T ss_pred             Eeeccccccc------cCccceEEEEcC
Confidence            5999999766      999999987654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.95  E-value=0.018  Score=29.97  Aligned_cols=21  Identities=14%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|+|.|.+..
T Consensus        71 ~L~I~~~~~~------DsA~YyCa~~~   91 (106)
T d1a0ql1          71 SFSISNLEPE------DIATYYCLQYY   91 (106)
T ss_dssp             EEEECSCCGG------GCSEEEEEECS
T ss_pred             eeEehhhccc------CCEeEEEEEeC
Confidence            6999999766      99999998654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=93.93  E-value=0.041  Score=28.49  Aligned_cols=22  Identities=14%  Similarity=0.280  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        71 ~L~I~~~~~~------Dsa~YyCa~~~~   92 (106)
T d1op3k1          71 TLTISGLQFD------DFATYHCQHYAG   92 (106)
T ss_dssp             EEEEESCCGG------GCSEEEEEEECS
T ss_pred             EEEEcccccc------CCCcEeeeeCCC
Confidence            5999999766      999999987653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.023  Score=28.94  Aligned_cols=22  Identities=32%  Similarity=0.816  Sum_probs=18.9

Q ss_pred             CCCcEEEEeeecC-cCCceeEEe
Q psy11568         94 NESGGRLDCAAQG-SPTPKIEWL  115 (116)
Q Consensus        94 ~g~~~~l~C~~~g-~P~p~i~W~  115 (116)
                      .++.+.|.|.+.| .|.|.++|+
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~   37 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWL   37 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEe
Confidence            4677899999998 699999996

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.86  E-value=0.024  Score=29.28  Aligned_cols=21  Identities=19%  Similarity=0.418  Sum_probs=17.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        70 ~L~I~~~~~~------Dsa~YyCa~~~   90 (104)
T d1yqvl1          70 SLTISSMETE------DAATYYCQQWG   90 (104)
T ss_dssp             EEEESSCCGG------GCEEEEEEECS
T ss_pred             EEEecccCcc------cCCeEEEEecC
Confidence            6999999766      99999997543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.82  E-value=0.023  Score=29.54  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|+|.|.+..
T Consensus        72 ~L~I~~~~~~------Dsa~YyCa~~~   92 (107)
T d3cx5k1          72 SLTISNLEPE------DIATYFCQHHI   92 (107)
T ss_dssp             EEECSCCCSC------CCSEEEEEECS
T ss_pred             EEEEeEeeec------CCCcEEeeeCC
Confidence            6999999766      99999997654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=93.77  E-value=0.036  Score=28.93  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        73 ~L~I~~~~~~------Dsa~YyCA~~~~   94 (111)
T d1rzfl1          73 TLGITGLQTG------DEADYYCGTWDS   94 (111)
T ss_dssp             EEEESSCCGG------GCSEEEEEEEET
T ss_pred             eeEEeeeccc------cCcceEEeecCC
Confidence            6999999766      999999987654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=93.76  E-value=0.059  Score=28.22  Aligned_cols=22  Identities=14%  Similarity=0.307  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|...+.
T Consensus        78 ~L~I~~~~~~------DsavYyCa~~~~   99 (113)
T d1n4xl_          78 TLKISRVEAE------DLGIYYCFQGSH   99 (113)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             cCccCCCCcc------cCEEEEEEECCC
Confidence            6999999766      999999965544

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.74  E-value=0.12  Score=26.72  Aligned_cols=21  Identities=38%  Similarity=0.494  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        73 ~L~I~~~~~~------Dsa~YyCa~~~   93 (111)
T d1bd2d1          73 SLHIVPSQPG------DSAVYFCAAME   93 (111)
T ss_dssp             EEEESSCCGG------GCEEEEEEEES
T ss_pred             EEEECCCccc------ccEEEEeeccC
Confidence            6999999766      99999998764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.66  E-value=0.031  Score=29.19  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        74 ~L~I~~~~~~------Dsa~YyCa~~~   94 (112)
T d1kgce1          74 TLKIQRTQQE------DSAVYLCASSL   94 (112)
T ss_dssp             EEEESSCCGG------GCEEEEEEEES
T ss_pred             EEEECCCCcC------CCEEEEEeeeC
Confidence            5999999666      99999998764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.62  E-value=0.065  Score=27.77  Aligned_cols=22  Identities=9%  Similarity=0.348  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        74 ~L~I~~l~~~------Dsa~YyCA~~~~   95 (109)
T d1bwwa_          74 TFTISSLQPE------DIATYYCQQYQS   95 (109)
T ss_dssp             EEEESSCCGG------GCEEEEEEECSS
T ss_pred             EEEEeeceeC------cCceEEEeecCC
Confidence            5999999766      999999986543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=93.56  E-value=0.075  Score=27.44  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             CeEEEeCCCcEEEEeeecCc-CCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGS-PTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~-P~p~i~W~  115 (116)
                      ..+.+..|+++.|.|...+. ....+.|+
T Consensus         9 ~~~~v~~G~tv~l~C~~~~~~~~~~~~WY   37 (108)
T d2fx7l1           9 GTQSLSPGERATLSCRASQSVGNNKLAWY   37 (108)
T ss_dssp             SEEEECTTCCEEEEEEESSCCGGGCEEEE
T ss_pred             CeEEECCCCCEEEEEEeecCCCCccceeE
Confidence            67788889999999987654 35568886

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.55  E-value=0.052  Score=28.34  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=18.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        73 ~L~I~~~~~~------DSa~YyCa~~~~~   95 (114)
T d1ogae1          73 PLTVTSAQKN------PTAFYLCASSSRS   95 (114)
T ss_dssp             CEEECSCCSC------CCEEEEEEEESST
T ss_pred             EEEECcCCcC------CceeEEEeeccCC
Confidence            5999999766      9999999776543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.54  E-value=0.036  Score=28.85  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        75 ~L~I~~~~~~------Dsa~YyCa~~~~   96 (110)
T d2aq2a1          75 SLILESATPS------QTSVYFCASGGG   96 (110)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEET
T ss_pred             EEEECCCCHh------hCEEEEEeeCCC
Confidence            5889999665      999999987653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=93.51  E-value=0.062  Score=28.07  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=17.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+++|.|....
T Consensus        77 ~L~Is~~~~~------DsAvYyCa~~~   97 (112)
T d1mjul1          77 TLRISRVEAE------DVGVYYCLQHL   97 (112)
T ss_dssp             EEEESSCCGG------GCEEEEEEECS
T ss_pred             EEEECCcccc------CCceEEEEeCC
Confidence            5999999766      99999996443

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.49  E-value=0.049  Score=27.85  Aligned_cols=21  Identities=43%  Similarity=0.621  Sum_probs=15.4

Q ss_pred             EEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         29 LMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        29 l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      ..|..+...      |+|.|+|.....
T Consensus        61 f~~~~~~~~------~~G~Y~C~y~~~   81 (99)
T d1nkra2          61 ADFPLGPAT------HGGTYRCFGSFH   81 (99)
T ss_dssp             EEEEEEECC------SCEEEEEEEEET
T ss_pred             EEEeccccc------cCEEEEEEeecC
Confidence            456667544      999999987654

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.032  Score=29.35  Aligned_cols=22  Identities=9%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        78 ~L~I~~l~~~------DsavYyCa~~~~   99 (118)
T d1yjdc1          78 TFYLQNLYVN------QTDIYFCKIEVM   99 (118)
T ss_dssp             EEEEESCCGG------GCEEEEEEEEEE
T ss_pred             EEEECCCCcc------cCeEEEEEEecc
Confidence            5999999766      999999987654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.43  E-value=0.074  Score=27.60  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=18.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        75 ~L~i~~l~~~------Dsa~YyCA~~~~~   97 (111)
T d1cd0a_          75 SLTISGLKTE------DEADYYCQSYDAR   97 (111)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETT
T ss_pred             ccccccCCcc------cCcEEEEeeccCC
Confidence            6999999766      9999999866543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.036  Score=28.15  Aligned_cols=46  Identities=20%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             EEEEEccCCeeeeccccc--eEEeeCCe---EEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVKDL--RIALSNGS---LMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~--~~~~~~~~---l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|+| ++||+.+......  .....++.   ...-.+..      .+...|+|.+...
T Consensus        33 ~vtW-~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~------~~~~~ytC~V~H~   83 (95)
T d1k5na1          33 TLTW-QRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS------GEEQRYTCHVQHE   83 (95)
T ss_dssp             EEEE-EETTEECGGGCEECCCEECSSSCEEEEEEEEEET------TCGGGEEEEEECT
T ss_pred             EEEE-EECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc------CCCCEEEEEEEEC
Confidence            5899 9999988642111  11222222   11112222      2556899999876

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.41  E-value=0.045  Score=28.84  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=18.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        78 ~L~i~~~~~~------Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          78 TLTVTSAHPE------DSGFYVCSALAGS  100 (118)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSS
T ss_pred             cccccccccc------cCceEEEEEecCC
Confidence            5999999766      9999999986543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.36  E-value=0.047  Score=28.43  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=18.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        72 ~L~i~~~~~~------Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          72 PLTLESARPS------HTSQYLCASSENI   94 (112)
T ss_dssp             CEEBSSCCTT------TCSEEEEEEECSS
T ss_pred             Eeeecccccc------ccccEEEEEecCC
Confidence            5889999665      9999999877553

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.26  E-value=0.047  Score=28.45  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        73 ~L~I~~~~~~------Dsa~YyCA~~~~   94 (113)
T d2ntsp1          73 EMNVSTLELG------DSALYLCASSLA   94 (113)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESS
T ss_pred             EEEECCCCcc------cceeeeeeeeCC
Confidence            5999999666      999999987654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=93.26  E-value=0.13  Score=26.71  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=22.3

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCc----CCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGS----PTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~----P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|..++.    ....+.|+
T Consensus         6 QsP-~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WY   40 (111)
T d2gsia1           6 QSP-ASLAVSLGQPATISCGASKSVRTSGYSYMDWN   40 (111)
T ss_dssp             EEC-SEEEEETTSCEEEEEEESSCCCCSSSCCEEEE
T ss_pred             eeC-CEEEECCCCCEEEEEEECCCCccCCccceEEE
Confidence            444 67888899999999987542    22347886

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.23  E-value=0.039  Score=28.98  Aligned_cols=22  Identities=14%  Similarity=0.339  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.....
T Consensus        76 ~L~I~~l~~~------Dsa~YyCa~~~~   97 (117)
T d1dqta_          76 NLTIQGLRAV------DTGLYLCKVELM   97 (117)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEE
T ss_pred             EEEhhcCccc------cCEeEEEEEecC
Confidence            6999999766      999999987643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.21  E-value=0.077  Score=27.68  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.....
T Consensus        74 ~L~I~~~~~~------Dsa~YyCa~~~~   95 (110)
T d1oaql_          74 ALTITGAQTE------DEAIYFCALWYS   95 (110)
T ss_dssp             EEEEESCCGG------GCEEEEEEEEET
T ss_pred             eeecCCCCcc------ccEeEEEEcccC
Confidence            6999999766      999999986653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.026  Score=28.33  Aligned_cols=13  Identities=15%  Similarity=0.353  Sum_probs=10.6

Q ss_pred             EEEEEccCCeeeec
Q psy11568          3 VLLWLIRDNTVIAY   16 (116)
Q Consensus         3 ~v~W~~~~g~~~~~   16 (116)
                      .|+| ++||+.+..
T Consensus        33 ~v~W-~~~g~~~~~   45 (89)
T d2mhaa1          33 TLTW-QLNGEELIQ   45 (89)
T ss_dssp             EEEE-EETTEEECT
T ss_pred             EEEE-EECCEEeCC
Confidence            6899 899988863

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=93.12  E-value=0.037  Score=29.01  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|+|.|.+..
T Consensus        78 ~L~I~~l~~~------Dsa~YyCA~~~   98 (113)
T d1q9ra1          78 TLTITSVQAE------DLAVYYCKQSY   98 (113)
T ss_dssp             EEEESSCCGG------GCEEEEEEECS
T ss_pred             eEEecccccC------CCeEEEecccC
Confidence            5999999766      99999997643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.10  E-value=0.091  Score=27.19  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        73 ~L~i~~~~~~------Dsa~YyCA~~~~~   95 (110)
T d1ac6a_          73 HLQKASVQES------DSAVYYCALSGGN   95 (110)
T ss_dssp             CEEEEEECGG------GCEEEEEEEEETT
T ss_pred             eeeecCcCcC------CCcccceeecCCC
Confidence            5889999665      9999999876543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.08  E-value=0.15  Score=26.51  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |+|.|.|......
T Consensus        73 ~lti~~L~~e------Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          73 QVQMTDLQVT------DSGLYRCVIYHPP   95 (110)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECTT
T ss_pred             EEEECccccC------CCEEEEEEEeCCC
Confidence            4889999766      9999999875443

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.061  Score=27.78  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=19.4

Q ss_pred             EeCCCcEEEEeeecC-cCCc--eeEEe
Q psy11568         92 FSNESGGRLDCAAQG-SPTP--KIEWL  115 (116)
Q Consensus        92 ~~~g~~~~l~C~~~g-~P~p--~i~W~  115 (116)
                      +.+|+.+.|.|.+.+ .|.+  .++|+
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~   39 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLL   39 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEe
Confidence            578999999999876 5754  57896

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=92.70  E-value=0.11  Score=26.96  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCc----CCceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGS----PTPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~----P~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|.....    -...+.|+
T Consensus         6 QsP-~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WY   40 (111)
T d1j05a_           6 QSP-ASLAVSLGQRATMSCRAGESVDIFGVGFLHWY   40 (111)
T ss_dssp             EEC-SEEECCTTSCEEEEEEESSCCBSSSCBCEEEE
T ss_pred             ccC-CEEEECCCCCEEEEEEeccCCccCCceeEEEE
Confidence            344 67778889999999987432    22347886

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.66  E-value=0.068  Score=27.82  Aligned_cols=22  Identities=23%  Similarity=0.538  Sum_probs=18.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        74 ~L~i~~~~~~------Dsa~YyCa~~~~   95 (113)
T d1j8he1          74 SLILESASTN------QTSMYLCASSST   95 (113)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECT
T ss_pred             eeEeccCccC------CcccEEeeEccC
Confidence            5889999666      999999987653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=92.54  E-value=0.091  Score=27.34  Aligned_cols=22  Identities=14%  Similarity=0.310  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|+|.|.+...
T Consensus        71 ~L~I~~l~~~------DsavYyCA~~~~   92 (109)
T d1w72l1          71 TLTISRVEAG------DEADYYCQVWDS   92 (109)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEET
T ss_pred             ceEEeeeccC------CCEEEEEEecCC
Confidence            6889999666      999999987654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.095  Score=26.66  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      ...|.++...      |+|.|+|......
T Consensus        61 ~F~l~~v~~~------~~G~Y~C~y~~~~   83 (98)
T d1ugna2          61 IFSVGPVSPS------RRWWYRCYAYDSN   83 (98)
T ss_dssp             EEEECCCCTT------SCEEEEEEEECTT
T ss_pred             EEEeeecccC------CCeEEEEeeEcCC
Confidence            4778888655      9999999876654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.069  Score=27.11  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      ...|.++...      |+|.|+|.....
T Consensus        58 ~F~i~~v~~~------~~G~Y~C~y~~~   79 (96)
T d1ugna1          58 QFPIPSITWE------HTGRYRCYYGSD   79 (96)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEET
T ss_pred             EEEEEecCHH------HCCeEEEEEeCC
Confidence            6888999766      999999987543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.37  E-value=0.13  Score=26.19  Aligned_cols=40  Identities=20%  Similarity=0.404  Sum_probs=25.0

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.| .+|+..+....       +..|.+.+.+.-     .++|.|.|...+.
T Consensus        28 ~I~W-kkn~~~i~g~~-------~~~L~L~~FSE~-----e~SGyY~C~~~~~   67 (100)
T d1jbja2          28 NLKW-EKNGQELPQKH-------DKHLVLQDFSEV-----EDSGYYVCYTPAS   67 (100)
T ss_dssp             TCEE-EETTEEECSCC-------CSEEEEESCCTT-----TSCEEEEEECSSC
T ss_pred             ceEE-eeccccCCCCC-------CcEEEEcccccc-----ccCcceEEecCCC
Confidence            3688 88887765311       224666666431     3999999965444

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=92.32  E-value=0.049  Score=28.47  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.++..+      |+|.|.|.+....
T Consensus        75 ~L~I~~~~~~------Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          75 EMNMSALELE------DSAMYFCASSLRW   97 (113)
T ss_dssp             EEECCSCCGG------GCEEECEEEESSS
T ss_pred             EEEecccCcC------CceeEEEEeecCC
Confidence            5889999665      9999999876543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.062  Score=28.20  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        76 ~L~I~~l~~~------Dsa~YyCa~~~~   97 (118)
T d1i8lc_          76 NLTIQGLRAM------DTGLYICKVELM   97 (118)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEE
T ss_pred             EEEeeccccC------CCEEEEEeEecc
Confidence            5999999766      999999987654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.18  E-value=0.077  Score=27.58  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|.+..
T Consensus        73 ~L~I~~~~~~------DsavYyCA~~~   93 (112)
T d2bnub1          73 PLRLLSAAPS------QTSVYFCASSY   93 (112)
T ss_dssp             CEEESSCCGG------GCEEEEEEEEC
T ss_pred             EEEECCCCHH------HCEEEEEeecC
Confidence            5999999766      99999998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=92.08  E-value=0.084  Score=26.82  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      ...|.+++.+      |+|.|+|.....
T Consensus        58 ~F~l~~v~~~------~~G~Y~C~y~~~   79 (96)
T d1nkra1          58 NFSISRMTQD------LAGTYRCYGSVT   79 (96)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEBT
T ss_pred             EEEEcccCcc------cCeEEEEEEEcC
Confidence            4788999665      999999987655

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.054  Score=28.17  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCc----eeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTP----KIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p----~i~W~  115 (116)
                      ....+.+|+++.|.|...+.+.+    .+.|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~   43 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWL   43 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEE
Confidence            45677889999999998765432    46786

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.03  E-value=0.058  Score=28.61  Aligned_cols=21  Identities=19%  Similarity=0.380  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|+|.|.+..
T Consensus        72 ~L~I~~~~~~------DsavYyCa~~~   92 (119)
T d1f3rb2          72 TLTISSLQPE------DVATYFCYQYN   92 (119)
T ss_dssp             EEEECSCCGG------GCSEEEEEEES
T ss_pred             EEEcccCccC------CCeEEEeeccC
Confidence            5999999666      99999997654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=91.99  E-value=0.21  Score=25.95  Aligned_cols=31  Identities=16%  Similarity=0.389  Sum_probs=22.9

Q ss_pred             ecCCCeEEEeCCCcEEEEeeecCcC-----CceeEEe
Q psy11568         84 IEPPYRFEFSNESGGRLDCAAQGSP-----TPKIEWL  115 (116)
Q Consensus        84 ~~~~~~~~~~~g~~~~l~C~~~g~P-----~p~i~W~  115 (116)
                      +.| ..+.+.+|+++.|.|..++..     ...+.|+
T Consensus         7 Q~P-~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WY   42 (113)
T d1n4xl_           7 QTP-LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWY   42 (113)
T ss_dssp             EEC-SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEE
T ss_pred             CcC-CEEEECCCCCEEEEEEeccccccCCCceEeEEE
Confidence            444 678888999999999876432     2467886

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=91.94  E-value=0.074  Score=27.93  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+++|.|.+...
T Consensus        73 ~L~I~~v~~~------DsA~YyCA~~~~   94 (114)
T d2rhea_          73 SLAISGLESE------DEADYYCAAWND   94 (114)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEET
T ss_pred             eeEecccCcc------cCceEEEeecCC
Confidence            6999999766      999999987643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=91.93  E-value=0.051  Score=28.83  Aligned_cols=21  Identities=19%  Similarity=0.407  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|.|.|....
T Consensus        80 ~L~I~~l~~~------Dsa~YyCA~~~  100 (120)
T d1ypzf1          80 ILTIYSLEEE------DEAIYYCSYGE  100 (120)
T ss_dssp             EEEECSCCGG------GCSEEEEEECC
T ss_pred             cccccccccc------cceeEEEEEcC
Confidence            4999999766      99999997654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=91.64  E-value=0.033  Score=28.38  Aligned_cols=47  Identities=11%  Similarity=0.227  Sum_probs=24.7

Q ss_pred             EEEEEccCCeeeeccc-cceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||..+.... .......+++..+   -.+..+      |...|+|.+....
T Consensus        34 ~v~W-~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~------~~~~ytC~V~H~s   84 (96)
T d2h26a1          34 WVMW-MRGEQEQQGTQLGDILPNANWTWYLRATLDVADG------EAAGLSCRVKHSS   84 (96)
T ss_dssp             EEEE-EETTEECTTCEECCCEECTTSCEEEEEEEEEEGG------GCTTEEEEEEEGG
T ss_pred             EEEE-EECcccCCCceeCccEeCCCCcEEEEEEEEEeCc------cCCEEEEEEEeCC
Confidence            6899 88888765321 1111223333211   222222      5668999988753

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=91.49  E-value=0.097  Score=27.64  Aligned_cols=22  Identities=18%  Similarity=0.224  Sum_probs=18.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|+|.|.....
T Consensus        76 ~L~i~~~~~~------Dsa~YyCA~~~~   97 (120)
T d1hxma1          76 VLKILAPSER------DEGSYYCACDTL   97 (120)
T ss_dssp             EEEESSCCGG------GCEEEEEEEECC
T ss_pred             eccccccccc------CCceeecCcccC
Confidence            6999999666      999999986654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.46  E-value=0.071  Score=27.68  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.+...
T Consensus        70 ~L~I~~l~~~------Dsa~YyCA~~~~   91 (108)
T d1nfde1          70 TLTISGAQPE------DEAAYYCLSSYG   91 (108)
T ss_dssp             EEEETTCCGG------GCSEEEEEEEET
T ss_pred             eeeEcCcccc------CCceEEEEeecC
Confidence            6889999666      999999987644

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=91.39  E-value=0.069  Score=26.62  Aligned_cols=46  Identities=7%  Similarity=0.138  Sum_probs=24.8

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCC-CCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPF-PETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v-~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||..+..... .....++....... ...      ....|+|.+....
T Consensus        31 ~v~W-~~~g~~~~~~~~-~~~~~~gtys~~s~~~~~------~~~~yTC~V~H~~   77 (86)
T d1hxma2          31 RINL-VSSKKITEFDPA-IVISPSGKYNAVKLGKYE------DSNSVTCSVQHDN   77 (86)
T ss_dssp             EEEE-ECSSEEEECCCE-EEECTTSSEEEEEEEEET------TTTTCEEEEEETT
T ss_pred             EEEE-EECCEEccCcEE-eeeccCCcEEEEEEEecC------CCCEEEEEEEECC
Confidence            5789 899987753221 22233443222111 111      3447999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.16  E-value=0.28  Score=24.93  Aligned_cols=27  Identities=15%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             CeEEEeCCCcEEEEeeecCcCCceeEEe
Q psy11568         88 YRFEFSNESGGRLDCAAQGSPTPKIEWL  115 (116)
Q Consensus        88 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~  115 (116)
                      ..+.+.+|+++.|.|..+. ....+.|+
T Consensus         8 ~~l~~~~G~~vtl~C~~s~-~~~~~~WY   34 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASS-SVNYMYWY   34 (104)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCSCCEEE
T ss_pred             CeEEECCCCCEEEEEEeCC-CCCccEEE
Confidence            7788889999999998654 34457886

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=90.93  E-value=0.093  Score=27.88  Aligned_cols=21  Identities=14%  Similarity=0.274  Sum_probs=17.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+|+|.|....
T Consensus        81 ~L~i~~l~~~------Dsa~YyCA~~~  101 (123)
T d1hxmb1          81 TLTIHNVEKQ------DIATYYCALWE  101 (123)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEE
T ss_pred             eecccccccc------cCcEEEEeeeC
Confidence            4899999766      99999998643

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.14  Score=24.65  Aligned_cols=38  Identities=13%  Similarity=0.269  Sum_probs=19.8

Q ss_pred             EEEEEccCCeeeeccccceEEeeCCeEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568          3 VLLWLIRDNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~~~~~~~~~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      +|+| ++++..+...       .+.++-+-+...+      .-|.|.|.+..
T Consensus        19 si~W-~k~~~~~~~~-------~~k~lnLG~~~~D------PRG~Y~C~~~e   56 (74)
T d1xiwb_          19 SITW-VEGTVGTLLS-------DITRLDLGKRILD------PRGIYRCNGTD   56 (74)
T ss_dssp             CEEE-EEECCCEEEG-------GGTEEEEEEGGGC------CEEEEEEC---
T ss_pred             eeEE-ecCCcccccC-------CccEeecCCcccC------CCcceEeCCcc
Confidence            4788 7765433211       1224445444433      57999998764

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.5  Score=23.83  Aligned_cols=24  Identities=8%  Similarity=0.191  Sum_probs=19.6

Q ss_pred             CeEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         27 GSLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        27 ~~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      ....|.++...      ++|.|.|.|....
T Consensus        59 ~Gf~I~~~~~~------~~g~y~C~a~~~g   82 (95)
T d1fltx_          59 KGFIISNATYK------EIGLLTCEATVNG   82 (95)
T ss_dssp             TEEEESSCCGG------GCEEEEEEEEETT
T ss_pred             CCEEEeCCCcc------cCeEEEEEEEECC
Confidence            36888888655      9999999998764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=90.66  E-value=0.096  Score=27.18  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=17.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.++..+      |+|.|.|.....
T Consensus        70 ~L~i~~~~~~------Dsa~YyCa~~~~   91 (112)
T d1kgcd1          70 TLILHRATLR------DAAVYYCILPLA   91 (112)
T ss_dssp             EEEESSCCGG------GCEEEEEECCCC
T ss_pred             EEEEeecccc------cceeEeeeEecC
Confidence            5899998655      999999986543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.064  Score=27.12  Aligned_cols=20  Identities=30%  Similarity=0.612  Sum_probs=16.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      ...|.+++.+      |+|.|+|...
T Consensus        55 ~F~i~~v~~~------~~G~Y~C~~~   74 (93)
T d1olla2          55 EFPLGPVTTA------HRGTYRCFGS   74 (93)
T ss_dssp             EEEEEECCGG------GCEEEEEECE
T ss_pred             EEEecccChh------cCceEEEEeE
Confidence            5888999665      9999999754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.16  Score=25.90  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=25.7

Q ss_pred             EEEEEccCCeeeeccc--cceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK--DLRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~--~~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++....  .......+++..+   -.+..++   -.....|+|.+.+..
T Consensus        38 ~v~W-~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~---w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          38 TVDW-KVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARA---WERHSSYSCQVTHEG   92 (102)
T ss_dssp             EEEE-EETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHH---HTTCCEEEEEEEETT
T ss_pred             EEEE-EECCEECCCCeEecccEEcCCCCEEEEEEEEECHHH---hCCCCEEEEEEEECC
Confidence            6899 89998876311  1111223332111   2222210   013568999998864

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=89.95  E-value=0.11  Score=26.12  Aligned_cols=47  Identities=13%  Similarity=0.269  Sum_probs=24.8

Q ss_pred             EEEEEccCCeeeeccccc--e-EEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL--R-IALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~--~-~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||..+......  . ....+++..+   ..+..+      +...|+|.+....
T Consensus        33 ~v~W-~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~------~~~~ytC~V~H~~   85 (94)
T d1hyrc1          33 TLSW-RQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQG------EEQRFTCYMEHSG   85 (94)
T ss_dssp             EEEE-EETTEECCSTTSEECCCEECSSSCEEEEEEEEEETT------CGGGEEEEEEETT
T ss_pred             EEEE-eECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCC------CCCEEEEEEEECC
Confidence            5899 8999887642111  1 1112232111   222222      5567999998753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.12  Score=26.46  Aligned_cols=50  Identities=10%  Similarity=0.222  Sum_probs=26.2

Q ss_pred             EEEEEccCCeeeecccc-ceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD-LRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.++..... ......++...+   -.+..+   .-.....|+|.+.+..
T Consensus        39 ~v~W-~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~---~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          39 QITW-LEDGQVMDVDLSTASTTQEGELASTQSELTLSQK---HWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             EEEE-EETTEECCGGGEEEEEEEETTEEEEEEEEEEEHH---HHHTTCCEEEEEEETT
T ss_pred             EEEE-EECCEEccCCceeeeEeCCCCeEEEEEEEEECHH---HcCCCCEEEEEEEECC
Confidence            6899 899998864221 112223432111   222211   0012467999999875

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.20  E-value=0.22  Score=26.44  Aligned_cols=22  Identities=14%  Similarity=0.377  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        81 ~L~i~~l~~e------DsAvYyCAr~~~  102 (120)
T d2agjh1          81 VLTLTNLDPV------DTATYYCARTSG  102 (120)
T ss_dssp             EEEEESCCGG------GCEEEEEEEECS
T ss_pred             eeeEEeeeec------cceEEeeEecCC
Confidence            4999999766      999999975443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.80  E-value=0.064  Score=27.57  Aligned_cols=50  Identities=8%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             EEEEEccCCeeeeccccc-eEEeeCCeE---EecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL-RIALSNGSL---MFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~~~~~~~~l---~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+++...... .....+++.   .+-.+..++   -.+...|+|.+.+..
T Consensus        38 ~v~W-~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~---w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          38 TVTW-KANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQ---WKSHNRVSCQVTHEG   91 (104)
T ss_dssp             EEEE-EETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHH---HHTCSCEEEEEECTT
T ss_pred             EEEE-EECCEECCCCEEeccccCCCceEEEEEEEEEcHHH---cCCCCEEEEEEEECC
Confidence            6899 8999988642111 111223332   222332210   013457999998875

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=88.50  E-value=0.11  Score=26.52  Aligned_cols=12  Identities=33%  Similarity=0.642  Sum_probs=9.4

Q ss_pred             CceEEEEEEEcC
Q psy11568         44 HSTVYRCRASNE   55 (116)
Q Consensus        44 d~G~y~C~a~n~   55 (116)
                      +...|+|.+...
T Consensus        75 ~~~~ytC~V~H~   86 (98)
T d1u58a1          75 LEHVYSCRVKGI   86 (98)
T ss_dssp             CGGGEEEEEEEG
T ss_pred             CCCEEEEEEEeC
Confidence            667899998764

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.86  Score=23.12  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=25.4

Q ss_pred             EEEEEccCCeeeeccc-cceEEeeCCeEE---ecCCCCCCCCCC-CCceEEEEEEEcCCCc
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIALSNGSLM---FPPFPETGFRPD-VHSTVYRCRASNEAGV   58 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~~~~~l~---i~~v~~~~~~~~-~d~G~y~C~a~n~~g~   58 (116)
                      .|+| .++|....... .......+++..   ...+.+++  +. .....|+|.+.+..+.
T Consensus        39 ~v~W-~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~e--W~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          39 TFSW-KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKD--VMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             EEEE-EETTSCEECCEEECCCEEETTEEEEEEEEEECTTC--C---CCCEEEEEEECTTCC
T ss_pred             EEEE-EECCccccCCEEcceEEccCCCEEEEEEEEEcHHH--hccCCCCEEEEEEEECCCC
Confidence            5899 88877665311 111122344211   12222221  11 1224799999987643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.78  E-value=0.27  Score=25.30  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=16.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+|.+++.+      |.++|.|......
T Consensus        67 ~L~~~sL~~e------DTAvYYCAr~~~~   89 (103)
T d1oari_          67 YMQLSSLTSE------DSAVYYCARMWYY   89 (103)
T ss_dssp             EEEECCC---------CCSEEEEEEEECS
T ss_pred             Eeeeeecccc------ccEEEEeEEECCC
Confidence            4899999766      9999999865543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=87.25  E-value=0.35  Score=25.57  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        78 ~L~i~~L~~e------DtA~YYCAr~~~   99 (119)
T d1kxvc_          78 YLQMDSLKPD------DTAMYYCKPSLR   99 (119)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEES
T ss_pred             ecccccCCcC------CcceEeeeeccc
Confidence            4899999776      999999976554

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=86.71  E-value=0.21  Score=25.66  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             EEEEEccCCeeeecccc-ceEEeeCCe---EEecCCCCCCCCCCCCc-eEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD-LRIALSNGS---LMFPPFPETGFRPDVHS-TVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~~~~~~~~---l~i~~v~~~~~~~~~d~-G~y~C~a~n~~   56 (116)
                      .|+| ++||..+..... ......+++   .....+..+      +. ..|+|.+....
T Consensus        42 ~v~W-~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~------~w~~~ytC~V~H~s   93 (107)
T d1hxmb2          42 KIHW-EEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEK------SLDKEHRCIVRHEN   93 (107)
T ss_dssp             EEEE-EESSSCCCCCCEECCCEECSSSEEEEEEEEECTG------GGGSCEEEEEEETT
T ss_pred             EEEE-EECCeEccCCEEccceecCCCeEEEEEEEEEecc------cCCCeEEEEEEECC
Confidence            5899 888877653111 111122332   112233222      42 37999998864

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.46  E-value=1.1  Score=22.45  Aligned_cols=13  Identities=8%  Similarity=0.460  Sum_probs=9.7

Q ss_pred             ceEEEEEEEcCCC
Q psy11568         45 STVYRCRASNEAG   57 (116)
Q Consensus        45 ~G~y~C~a~n~~g   57 (116)
                      ...|+|.+.+...
T Consensus        79 ~~~ytC~V~H~s~   91 (102)
T d2fbjh2          79 GESVKCSVQHDSN   91 (102)
T ss_dssp             TCEEEEEEEETTS
T ss_pred             CCEEEEEEEECCC
Confidence            4579999987643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.28  E-value=0.42  Score=25.20  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.+.+++.+      |.++|.|......
T Consensus        80 yL~m~~L~~e------DTAvYYCAr~~~~  102 (117)
T d1jpth1          80 YLQMNSLRAE------DTAVYYCARDTAA  102 (117)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSS
T ss_pred             EecccccCCC------CceEEEEeecCCC
Confidence            3888899766      9999999765543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=0.14  Score=26.05  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             EEEEEccCCeeeeccc--cceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK--DLRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~--~~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||..+....  .......+++..+   -.+..++   -.....|+|.+.+..
T Consensus        38 ~v~W-~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~---w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          38 TVAW-KADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQ---WKSHRSYSCQVTHEG   92 (102)
T ss_dssp             EEEE-EETTEECCSSEEECCCEECTTSCEEEEEEEEECHHH---HHHSSCEEEEEEETT
T ss_pred             EEEE-EECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHH---hCCCCEEEEEEEECC
Confidence            5899 89998876421  1112223333222   2222210   001347999998864

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=86.16  E-value=0.42  Score=25.23  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.+++.+      |++.|.|......+
T Consensus        80 ~L~~~sL~~e------DtAvYYCAr~~~~~  103 (118)
T d2fbjh1          80 YLQMSKVRSE------DTALYYCARLHYYG  103 (118)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEETTT
T ss_pred             eccccccCCC------cceEEEeeEecCCC
Confidence            3888999766      99999998766543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=85.77  E-value=0.46  Score=24.99  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=18.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |+++|.|......
T Consensus        79 ~L~i~~L~~e------DtAvYyCAr~~~~  101 (116)
T d7fabh1          79 SLRLSSVTAA------DTAVYYCARNLIA  101 (116)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSS
T ss_pred             hccccccccc------cceEEEeeeecCC
Confidence            4889999766      9999999865544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.28  Score=25.08  Aligned_cols=50  Identities=12%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             EEEEEccCCeeeecccc---ceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD---LRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~---~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||+.+.....   ......+++..+   -.+..+   .-.....|+|.+.+..
T Consensus        37 ~v~W-~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~---~W~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          37 SVQW-LHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRA---EWEQKDEFICRAVHEA   92 (105)
T ss_dssp             EEEE-EETTEECCGGGEEECCCEECSSSCEEEEEEEEECHH---HHTTGGGEEEEEECTT
T ss_pred             EEEE-EECCEECCCceeEeeeeEecCCCCEEEEEEEEECHH---HcCCCCEEEEEEEECC
Confidence            6899 899998764211   112223333221   222211   0013468999998864

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.27  E-value=0.21  Score=25.32  Aligned_cols=50  Identities=12%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             EEEEEccCCeeeeccccc-eEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKDL-RIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~~-~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||++....... .....+++..+   -.+.++   .-.....|+|.+....
T Consensus        37 ~v~W-~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~---~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          37 YTEW-KMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKE---TWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             EEEE-EETTEECSSEEECCCEECTTSCEEEEEEEEEEHH---HHHTTCCEEEEEECTT
T ss_pred             EEEE-EECCeeccCcEEcccEeCCCCCEEEEEEEEECHH---HhCCCCEEEEEEEeCC
Confidence            5899 9999877532111 11222333222   122221   0013457999998863

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=85.23  E-value=0.27  Score=25.98  Aligned_cols=19  Identities=16%  Similarity=0.373  Sum_probs=15.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      .|.|.+++.+      |+++|.|..
T Consensus        80 yL~~~~L~~e------DtAvYYCAr   98 (118)
T d1nlbh1          80 YLQINSLKNE------DTATYFCAR   98 (118)
T ss_dssp             EEEECSCCGG------GCEEEEEEE
T ss_pred             EeeeeecccC------cceEEEEee
Confidence            4889999766      999999953

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=85.07  E-value=0.53  Score=24.91  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=17.3

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |+++|.|....
T Consensus        80 ~L~i~~L~~e------DtAvYYCAr~~  100 (121)
T d1j05b_          80 YLQLTSLTSE------DTAVYYCAPFG  100 (121)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEB
T ss_pred             eecccccCcC------cceEEEeEeec
Confidence            3889999776      99999997654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=84.98  E-value=0.41  Score=25.22  Aligned_cols=24  Identities=13%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|.|.+++.+      |++.|.|......+
T Consensus        80 ~L~i~~L~~e------DtAvYYCA~~~~~~  103 (117)
T d1iqdb1          80 YMELSSLRSD------DTAVYYCAVPDPDA  103 (117)
T ss_dssp             EEEECSCCGG------GCEEEEEEECSSSS
T ss_pred             EEeecccCcC------cceEEEEeEcCCCe
Confidence            4899999776      99999998765443

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.82  E-value=0.25  Score=25.03  Aligned_cols=50  Identities=14%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             EEEEEccCCeeeecccc-ceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD-LRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.++..... ......+++..+   -.+..++   -.....|+|.+....
T Consensus        36 ~v~W-~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~---w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          36 TVEW-QWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSN---WEAGNTFTCSVLHEG   89 (101)
T ss_dssp             EEEE-EETTEECCSEEECCCEECTTSCEEEEEEEEEEHHH---HHTTCCEEEEEECTT
T ss_pred             EEEE-EECCEEccCcEEeeeecCCCCcEEEEEEEEECHHH---hCCCCEEEEEEEECC
Confidence            5899 899988753211 112223333221   1232210   013467999998763

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.80  E-value=0.55  Score=24.82  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        80 ~L~i~~l~~e------DtA~YYCAr~~~  101 (120)
T d1pg7x1          80 YIELVRLTSN------DSAVYYCAREDF  101 (120)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECC
T ss_pred             EccccccCCC------cceEEEeeecCC
Confidence            4889999766      999999986543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=84.49  E-value=0.46  Score=25.16  Aligned_cols=22  Identities=18%  Similarity=0.381  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        80 ~L~i~sL~~e------DtAvYYCAr~~~  101 (121)
T d1ol0a_          80 YLQMNSLRAE------DTAVYYCAREPR  101 (121)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCS
T ss_pred             Eeeeeecccc------cceEEEEEEecC
Confidence            4899999776      999999975543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=84.39  E-value=0.41  Score=25.32  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=17.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |.+.|.|....
T Consensus        80 yLqm~sL~~e------DTAvYYCAr~~  100 (119)
T d1rz7h1          80 YLELSSLRSE------DTAVYYCAADP  100 (119)
T ss_dssp             EEEECSCCGG------GCEEEEEEECT
T ss_pred             EeeeeccCcc------cceEEEEeecC
Confidence            4889999766      99999997654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=84.39  E-value=0.53  Score=24.46  Aligned_cols=22  Identities=14%  Similarity=0.369  Sum_probs=17.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        82 ~L~i~sL~~e------DTAvYYCAr~~~  103 (109)
T d2ck0h1          82 YLQMNNLKTE------DTGIYYCVRGRD  103 (109)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECT
T ss_pred             EecccCCCHh------HCEEEEEEEcCC
Confidence            4888999766      999999985543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=84.38  E-value=0.59  Score=24.78  Aligned_cols=22  Identities=14%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.++|.|.....
T Consensus        80 yL~m~sL~~e------DTAvYYCAr~~~  101 (122)
T d1bz7b1          80 FLQMTSLRSE------DTAIYYCTRGGT  101 (122)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECC
T ss_pred             Eeeeeeeccc------CceEEEeecCCC
Confidence            4888999766      999999976543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=84.30  E-value=0.46  Score=25.30  Aligned_cols=22  Identities=18%  Similarity=0.462  Sum_probs=17.8

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        79 yLq~~sL~~e------DtAvYYCAr~~~  100 (124)
T d1zvya1          79 YLRMDSVKSE------DTAIYTCGATRK  100 (124)
T ss_dssp             EEEECSCCGG------GCEEEEEEECSS
T ss_pred             eceeccccCC------cceEEEEeeccc
Confidence            4888999766      999999987544

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.29  E-value=0.32  Score=25.59  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=16.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |+++|.|...
T Consensus        80 ~L~i~~l~~e------DtAvYYCAr~   99 (115)
T d1f3dh1          80 FMHLNSLTFE------DSAVYYCAND   99 (115)
T ss_dssp             EEEECSCCGG------GCEEEEEEEC
T ss_pred             EeeeeecCcC------CcEEEEEecc
Confidence            4899999766      9999999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=84.17  E-value=0.47  Score=25.36  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=18.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        85 ~L~i~~l~~e------DtAvYYCAr~~~  106 (127)
T d1i3ua_          85 NLQMNSLKPE------DTAVYYCAAKTT  106 (127)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESC
T ss_pred             EEeeeccccc------ceeEEEEEEEee
Confidence            4889999766      999999986644

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=84.09  E-value=0.61  Score=24.73  Aligned_cols=22  Identities=14%  Similarity=0.301  Sum_probs=17.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |++.|.|.....
T Consensus        81 yL~~~~L~~e------DtA~YYCAr~~~  102 (122)
T d1vgeh1          81 YMGLSSLRPE------DTAVYYCARDPY  102 (122)
T ss_dssp             EEEECSCCGG------GCEEEEEEEETT
T ss_pred             eecccccCCC------cceEEEEeecCC
Confidence            3888999766      999999976543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.84  E-value=0.5  Score=24.89  Aligned_cols=22  Identities=14%  Similarity=0.380  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        79 ~L~~~sL~~e------DtAvYYCAr~~~  100 (117)
T d1c5db1          79 FLKMNSLQTE------DTAIYFCTREDG  100 (117)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCS
T ss_pred             eccccccccC------cceEEEEeccCC
Confidence            4899999776      999999965433

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=83.75  E-value=0.55  Score=25.26  Aligned_cols=23  Identities=13%  Similarity=0.323  Sum_probs=18.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |+++|.|......
T Consensus        81 ~L~i~~l~~e------DtAvYYCAr~~~~  103 (132)
T d1tjgh1          81 VLVMTRVSPV------DTATYFCAHRRGP  103 (132)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECCC
T ss_pred             EcccccCCcc------cceEEEEEEecCC
Confidence            3899999776      9999999866543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.71  E-value=0.31  Score=25.76  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=16.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.++..+      |+++|.|....
T Consensus        80 ~L~i~~L~~e------DsAvYYCA~~~  100 (119)
T d1qnzh_          80 YLEFSRLTSD------DSAVYYCAIHY  100 (119)
T ss_dssp             EEEEEEECGG------GCEEEEEEECS
T ss_pred             eeeecccCcc------ceeEEEEEEec
Confidence            4889999766      99999996543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.70  E-value=0.52  Score=24.81  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=16.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |.+.|.|....
T Consensus        80 yLq~~~L~~e------DTAvYYCAr~~  100 (117)
T d1jnhb1          80 YLQLNSLTSE------DSAVYSCSRGR  100 (117)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEE
T ss_pred             eecccccCCC------cceEEEEeecC
Confidence            3889999766      99999996543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=83.69  E-value=0.5  Score=25.18  Aligned_cols=20  Identities=15%  Similarity=0.386  Sum_probs=17.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |+++|.|...
T Consensus        81 ~L~i~~l~~e------DtAvYyCAr~  100 (126)
T d1etzb1          81 FLKITSVDTS------DTATYHCARR  100 (126)
T ss_dssp             EEEECSCCGG------GCEEEEEEEE
T ss_pred             Ecceeccccc------ccceEEEEEe
Confidence            4999999766      9999999854

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=83.59  E-value=0.52  Score=25.03  Aligned_cols=22  Identities=14%  Similarity=0.335  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        80 ~L~i~~L~~e------DtAvYYCAr~~~  101 (123)
T d1mqkh_          80 YLQMSSLKSE------DTAMYYCVRHEY  101 (123)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEET
T ss_pred             ccceeeeccC------cccceeEEecCC
Confidence            3889999766      999999976554

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=83.55  E-value=0.64  Score=24.55  Aligned_cols=21  Identities=14%  Similarity=0.392  Sum_probs=17.1

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |+++|.|....
T Consensus        81 ~L~~~sL~~e------DtAvYYCAr~~  101 (120)
T d1ai1h1          81 FIQLISVTNE------DTAMYYCSREN  101 (120)
T ss_dssp             EEEESSCCGG------GCEEEEEEEEE
T ss_pred             ecceeeeecc------ceeEEEEEecC
Confidence            3888999776      99999997544

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=83.53  E-value=0.66  Score=24.73  Aligned_cols=22  Identities=14%  Similarity=0.351  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        80 ~L~~~~L~~e------DtavYYCAr~~~  101 (126)
T d1dfbh1          80 YLQMNSLRAE------DMALYYCVKGRD  101 (126)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEC
T ss_pred             EeeeeeeccC------cceEEEEEeccC
Confidence            4888999766      999999976543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=0.29  Score=25.03  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=18.0

Q ss_pred             eCCCcEEEEeeecCc-CCc-eeEEe
Q psy11568         93 SNESGGRLDCAAQGS-PTP-KIEWL  115 (116)
Q Consensus        93 ~~g~~~~l~C~~~g~-P~p-~i~W~  115 (116)
                      ..++.+.|.|.+.|- |.. .++|+
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~   42 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWL   42 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEE
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEE
Confidence            457889999999884 544 78996

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=83.44  E-value=0.38  Score=24.93  Aligned_cols=20  Identities=20%  Similarity=0.403  Sum_probs=16.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |+++|.|...
T Consensus        72 ~L~i~~l~~e------DtAvYyCA~~   91 (107)
T d1sjva_          72 YLEMNSLEPE------DTAVYYCYTH   91 (107)
T ss_dssp             EEEECSCCGG------GCSEEEEEEC
T ss_pred             EEeecCCCcc------cceeeeEecc
Confidence            4899999776      9999999643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=83.33  E-value=0.67  Score=24.75  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=18.2

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |.+.|.|......
T Consensus        80 yL~~~~L~~e------DTA~YYCAr~~~~  102 (127)
T d2fb4h1          80 FLQMDSLRPE------DTGVYFCARDGGH  102 (127)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECSS
T ss_pred             Eeeeeeeeec------ceeEEEEEEecCC
Confidence            4888999766      9999999865543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=83.29  E-value=0.37  Score=25.41  Aligned_cols=20  Identities=20%  Similarity=0.461  Sum_probs=16.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |++.|.|...
T Consensus        80 ~L~i~~L~~e------DtAvYYCAr~   99 (117)
T d1mfah1          80 YMELSSLTSE------DSAVYYCTRG   99 (117)
T ss_dssp             EEEECSCCGG------GCEEEEEEEE
T ss_pred             EeeecccCCC------cceEEEEecc
Confidence            4889999766      9999999643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.27  E-value=0.33  Score=24.53  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             EEEEEccCCeeeecccc-ceEEeeCCeEEe---cCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVKD-LRIALSNGSLMF---PPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~~-~~~~~~~~~l~i---~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| ++||.+...... ......+++..+   -.+..+   .-.....|+|.+.+..
T Consensus        37 ~v~W-~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~---~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          37 AVEW-ESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS---RWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEE-EETTEEECCEEECCCEECTTSCEEEEEEEEEEHH---HHHTTCCEEEEEECTT
T ss_pred             EEEE-EECCEECCCeEEcceEECCCCCEEEEEEEEECHH---HcCCCCEEEEEEEeCC
Confidence            6899 899987653211 112223343221   122111   0012357999998864

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=83.11  E-value=0.56  Score=24.92  Aligned_cols=20  Identities=20%  Similarity=0.383  Sum_probs=16.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |+++|.|...
T Consensus        81 ~L~i~sl~~e------DsAvYyCAr~  100 (123)
T d1r0ah1          81 FLNMMTVETA------DTAIYYCAQS  100 (123)
T ss_dssp             EEEECSCCGG------GCEEEEEEEE
T ss_pred             Ecceeecccc------cceEEeeccc
Confidence            3899999766      9999999754

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=83.01  E-value=0.13  Score=24.25  Aligned_cols=10  Identities=20%  Similarity=0.664  Sum_probs=7.6

Q ss_pred             CceEEEEEEE
Q psy11568         44 HSTVYRCRAS   53 (116)
Q Consensus        44 d~G~y~C~a~   53 (116)
                      .-|.|.|.+.
T Consensus        45 PRGiY~C~~~   54 (66)
T d1xmwa2          45 PRGMYQCGEN   54 (66)
T ss_dssp             CEEEEECCSS
T ss_pred             CCcceECCCC
Confidence            5799999543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=82.94  E-value=0.76  Score=23.90  Aligned_cols=50  Identities=14%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             EEEEEccCCeeeeccc-cceEEeeCCeEE---ecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568          3 VLLWLIRDNTVIAYVK-DLRIALSNGSLM---FPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus         3 ~v~W~~~~g~~~~~~~-~~~~~~~~~~l~---i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|+| +.||.++.... .......+++..   .-.+.+++   =.....|+|.+.+..
T Consensus        52 ~v~W-~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~e---W~~g~~ytC~V~H~~  105 (119)
T d1igtb3          52 QISW-FVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQD---WMSGKEFKCKVNNKD  105 (119)
T ss_dssp             EEEE-EETTEECSSTTCBCCEEECSSSEEEEEEEECCHHH---HHTTCEEEEEEECTT
T ss_pred             EEEE-eeCCcccCCCEECccEECCCCcEEEEEEEEEeHHH---hCCCCeEEEEEEECC
Confidence            5789 88988875421 112233344322   22332220   012357999999864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=82.77  E-value=0.4  Score=25.40  Aligned_cols=19  Identities=26%  Similarity=0.537  Sum_probs=15.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      .|.|.+++.+      |++.|.|..
T Consensus        79 ~L~i~~l~~e------DtA~YYCAr   97 (120)
T d1dn0b1          79 SLKLSSVTAA------DTAVYYCAR   97 (120)
T ss_dssp             EEEECSCCGG------GCEEEEEEE
T ss_pred             cccccccccc------cccEEEEEe
Confidence            3899999776      999999953

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.64  E-value=0.34  Score=24.52  Aligned_cols=13  Identities=15%  Similarity=0.301  Sum_probs=10.2

Q ss_pred             ceEEEEEEEcCCC
Q psy11568         45 STVYRCRASNEAG   57 (116)
Q Consensus        45 ~G~y~C~a~n~~g   57 (116)
                      .|.|+|.+.+...
T Consensus        77 ~~~ytC~V~H~~~   89 (101)
T d1kcvh2          77 SASVTCLVAHPKS   89 (101)
T ss_dssp             TSCCEEEEEEGGG
T ss_pred             CCeEEEEEEeCCC
Confidence            5789999988653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=82.38  E-value=0.8  Score=24.17  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        82 ~L~~~~L~~e------DtAvYYCA~~~~  103 (120)
T d1dlfh_          82 YLQMNTLRAE------DTGIYYCTGIYY  103 (120)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEBT
T ss_pred             ccceeeccCC------CceEEEeeEecC
Confidence            4888899766      999999976543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=82.19  E-value=0.59  Score=24.97  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.+.|.|.....
T Consensus        80 yL~~~sL~~e------DTavYYCAR~~~  101 (127)
T d2fx7h1          80 YLELNSLRPE------DTAVYYCAREGT  101 (127)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEE
T ss_pred             eeeecccCcc------cceEEEEeeccc
Confidence            4888999766      999999986543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.13  E-value=0.44  Score=25.16  Aligned_cols=19  Identities=16%  Similarity=0.441  Sum_probs=15.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      .|.|.+++.+      |+++|.|..
T Consensus        80 ~L~~~sL~~e------DTAvYYCAr   98 (118)
T d2jelh1          80 YMELARLTSE------DSAIYYCAR   98 (118)
T ss_dssp             EEEECSCCGG------GCEEEEEEE
T ss_pred             eecccccccC------cceeeeEEE
Confidence            4889999766      999999954

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=82.02  E-value=0.71  Score=24.68  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.+.|.|.....
T Consensus        80 yL~~~sL~~e------DTA~YYCAr~~~  101 (128)
T d2nxyd1          80 YLELRNLRSD------DTAVYFCAGVYE  101 (128)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEEC
T ss_pred             Eeeeeecccc------CceEEEEeEEec
Confidence            3888899766      999999987654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.99  E-value=0.23  Score=25.48  Aligned_cols=13  Identities=15%  Similarity=0.204  Sum_probs=10.5

Q ss_pred             EEEEEccCCeeeec
Q psy11568          3 VLLWLIRDNTVIAY   16 (116)
Q Consensus         3 ~v~W~~~~g~~~~~   16 (116)
                      .|+| ++||+++..
T Consensus        38 ~v~W-~~ng~~~~~   50 (107)
T d1mjul2          38 NVKW-KIDGSERQN   50 (107)
T ss_dssp             EEEE-EETTEEECT
T ss_pred             EEEE-EECCEEccC
Confidence            5899 899988763

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.97  E-value=0.85  Score=24.23  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=17.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        80 yL~l~sL~~e------DtAvYYCAR~~~  101 (125)
T d1rihh1          80 FMYLNSLTSE------DSAVYYCARESP  101 (125)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECC
T ss_pred             eeeeeccCcc------cceEEEEeeeCC
Confidence            3888999766      999999986543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=81.88  E-value=0.84  Score=23.94  Aligned_cols=22  Identities=14%  Similarity=0.330  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.+.|.|.....
T Consensus        79 ~L~~~~l~~e------DTAvYYCAr~~~  100 (116)
T d1a2yb_          79 FLKMNSLHTD------DTARYYCARERD  100 (116)
T ss_dssp             EEEECSCCGG------GCEEEEEEEESS
T ss_pred             Ecceeeeeec------cceEEEEEEeCC
Confidence            4899999776      999999986544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=81.74  E-value=0.39  Score=24.28  Aligned_cols=12  Identities=8%  Similarity=0.296  Sum_probs=9.6

Q ss_pred             EEEEEccCCeeee
Q psy11568          3 VLLWLIRDNTVIA   15 (116)
Q Consensus         3 ~v~W~~~~g~~~~   15 (116)
                      .|+| ++||.+..
T Consensus        37 ~v~W-~~~g~~~~   48 (102)
T d1igtb4          37 YVEW-TNNGKTEL   48 (102)
T ss_dssp             EEEE-EETTEECS
T ss_pred             EEEE-EECCEEcc
Confidence            6899 88988764

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.54  E-value=0.47  Score=25.07  Aligned_cols=19  Identities=21%  Similarity=0.499  Sum_probs=16.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRA   52 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a   52 (116)
                      .|.|.+++.+      |.++|.|..
T Consensus        80 ~L~~~sL~~e------DTAvYYCAr   98 (119)
T d1eapb1          80 YMQLNSLTSE------DSAVYFCKR   98 (119)
T ss_dssp             EEEECSCCGG------GCEEEEEEE
T ss_pred             EeeeecccCC------cceEEEEEE
Confidence            4888999766      999999964

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=81.48  E-value=0.91  Score=24.30  Aligned_cols=22  Identities=14%  Similarity=0.307  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |+++|.|.....
T Consensus        79 ~L~~~~L~~e------DtAvYyCAr~~~  100 (130)
T d1rhhb1          79 YMELTNLRSD------DTAVYYCARDFG  100 (130)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECC
T ss_pred             EEEeeccCCC------CcEEEEEEeecC
Confidence            3888999766      999999987654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=81.44  E-value=0.48  Score=25.00  Aligned_cols=21  Identities=19%  Similarity=0.486  Sum_probs=16.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |.++|.|....
T Consensus        80 yL~i~~L~~e------DtAvYYCAr~~  100 (118)
T d1ct8b1          80 YMQFSSLTTE------DSAIYYCARYR  100 (118)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEC
T ss_pred             EecccccCCC------cceEEEEeeec
Confidence            4888999766      99999996544

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=81.20  E-value=0.64  Score=24.60  Aligned_cols=20  Identities=20%  Similarity=0.424  Sum_probs=16.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |++.|.|...
T Consensus        80 yLq~~~L~~e------DtAvYYCAr~   99 (121)
T d2p49b1          80 YLQMDSLKPE------DTATYYCAAG   99 (121)
T ss_dssp             EEEECSCCGG------GCEEEEEEES
T ss_pred             EEEeeecccc------ceeEEeeecc
Confidence            3888999766      9999999764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.18  E-value=0.5  Score=24.85  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=16.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |.++|.|....
T Consensus        80 yL~~~sL~~e------DtAvYYCAr~~  100 (116)
T d1mjuh1          80 YMQLSSLTSD------DSAVYYCANKL  100 (116)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEE
T ss_pred             EecccccCCC------CceEEEEcccC
Confidence            4888899766      99999997543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.17  E-value=0.61  Score=24.48  Aligned_cols=22  Identities=14%  Similarity=0.227  Sum_probs=16.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|+|.+++.+      |+++|.|.....
T Consensus        79 ~L~~~~L~~e------DTAvYyCAr~~~  100 (116)
T d1fn4b1          79 FLKMNSLQTD------DTGTYYCTRDLY  100 (116)
T ss_dssp             ECCEESCCCC------CCEEEEEEEECS
T ss_pred             hcceeccCCC------CCEEEEEEeecC
Confidence            3777899766      999999975543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=81.10  E-value=0.5  Score=24.75  Aligned_cols=20  Identities=15%  Similarity=0.409  Sum_probs=16.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEE
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRAS   53 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~   53 (116)
                      .|.|.+++.+      |+++|.|...
T Consensus        80 ~L~~~~L~~e------DtAvYYCA~~   99 (114)
T d1indh1          80 YLQLNSLRSE------DTALYFCASH   99 (114)
T ss_dssp             EEEECSCCGG------GCEEEEEECG
T ss_pred             eeeeeeeccC------cccEEEECCC
Confidence            3899999776      9999999753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=80.76  E-value=0.68  Score=24.54  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=17.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.+.|.|.....
T Consensus        82 ~L~~~sL~~e------DTAvYYCar~~~  103 (122)
T d1q9rb1          82 YLQMNTLRAE------DSATYYCARDHD  103 (122)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCC
T ss_pred             ccceeeeccC------cceEEEEEecCC
Confidence            3888999766      999999986543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.69  E-value=0.87  Score=24.21  Aligned_cols=22  Identities=14%  Similarity=0.339  Sum_probs=17.6

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.++|.|.....
T Consensus        80 ~Lqm~sL~~e------DTAvYYCAr~~~  101 (125)
T d1op3h1          80 YLQMHKMRVE------DTAIYYCARKGS  101 (125)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECC
T ss_pred             eeeeeccCCc------cceeEeEeeccC
Confidence            4888999766      999999986543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=80.54  E-value=0.79  Score=24.42  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=17.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.+.|.|.....
T Consensus        79 ~L~i~~l~~e------DTAvYYCAr~~~  100 (126)
T d1rjca1          79 YLQMNSLKPE------DTAMYYCAADTS  100 (126)
T ss_dssp             EEEECSCCGG------GCEEEEEEECCT
T ss_pred             EEEEeccCcc------cCceeEEEeecc
Confidence            3899999776      999999986544

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=80.51  E-value=0.78  Score=24.61  Aligned_cols=21  Identities=19%  Similarity=0.472  Sum_probs=17.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |.++|.|....
T Consensus        82 ~Lq~~~L~~e------DTAvYYCAR~~  102 (131)
T d3c2ah1          82 YLQMNSLKTE------DTAVYSCTTDG  102 (131)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEE
T ss_pred             ecceeccccC------CceEEEEeccc
Confidence            4888999776      99999998663

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=80.31  E-value=0.82  Score=24.09  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=17.5

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |..+|.|.....
T Consensus        80 ~L~~~sL~~e------DTAvYYCAr~~~  101 (119)
T d1ncwh1          80 FLQLNSVTTE------DTATYYCAGLLW  101 (119)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEET
T ss_pred             eccccccccC------CceEEEEeEecc
Confidence            4888999766      999999975543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.27  E-value=1.1  Score=23.63  Aligned_cols=22  Identities=9%  Similarity=0.324  Sum_probs=17.4

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNE   55 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~   55 (116)
                      .|.|.+++.+      |.+.|.|.....
T Consensus        80 ~L~m~~L~~e------DTAvYYCAr~~~  101 (120)
T d1ad9b1          80 YMELSSLRSE------DTAFYFCAREKT  101 (120)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEBC
T ss_pred             eccccccCCC------cceEEEEEEcCC
Confidence            4888899766      999999976543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=80.17  E-value=0.74  Score=24.83  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=18.0

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEA   56 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~   56 (116)
                      .|.|.+++.+      |.++|.|......
T Consensus        80 yL~i~~L~~e------DTAvYYCAr~~~~  102 (135)
T d1ieha_          80 YLQMNSLKSE------DTAVYYCAKYSGG  102 (135)
T ss_dssp             EEEEESCCSS------SCEEEEEEEBSSS
T ss_pred             EecEeeeCcc------cceeeEEEEecCC
Confidence            4889999766      9999999765443

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.17  E-value=0.4  Score=25.26  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=16.9

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEc
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASN   54 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n   54 (116)
                      .|.|.+++.+      |.++|.|....
T Consensus        80 ~L~~~sL~~e------DTAvYYCAr~~  100 (117)
T d1b2wh1          80 YLQMNSLRPE------DTAVYYCARGF  100 (117)
T ss_dssp             EEEECSCCGG------GCEEEECCEES
T ss_pred             EeeeccccCC------cceEEEEcccc
Confidence            4888999766      99999996543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=80.17  E-value=1  Score=24.19  Aligned_cols=24  Identities=25%  Similarity=0.467  Sum_probs=18.7

Q ss_pred             eEEecCCCCCCCCCCCCceEEEEEEEcCCC
Q psy11568         28 SLMFPPFPETGFRPDVHSTVYRCRASNEAG   57 (116)
Q Consensus        28 ~l~i~~v~~~~~~~~~d~G~y~C~a~n~~g   57 (116)
                      .|++.+++.+      |+++|.|......+
T Consensus        79 ~L~~~~L~~e------DtA~YYCAr~~~~~  102 (133)
T d1rzfh1          79 YLHLRGLRSD------DTAVYYCASNSIAG  102 (133)
T ss_dssp             EEEECSCCGG------GCEEEEEEEEECCC
T ss_pred             EEeeccCCCC------CCEEEEeeeccCCc
Confidence            4888899766      99999997665543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=80.01  E-value=1.8  Score=21.91  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=17.7

Q ss_pred             EecCCCeEEEeCCCcEEEEeeecC
Q psy11568         83 RIEPPYRFEFSNESGGRLDCAAQG  106 (116)
Q Consensus        83 ~~~~~~~~~~~~g~~~~l~C~~~g  106 (116)
                      .+.| ....+.+|+++.|.|...+
T Consensus         5 ~Q~P-~~~~~~~G~~vtl~C~~s~   27 (110)
T d2aq2a1           5 TQSP-RNKVAVTGEKVTLSCQQTN   27 (110)
T ss_dssp             EEEC-SEEEECTTCCEEEEEEESS
T ss_pred             EEeC-CeEEEcCCCCEEEEEEECC
Confidence            3444 6778889999999997654