Psyllid ID: psy11582
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1760 | 2.2.26 [Sep-21-2011] | |||||||
| Q5TZA2 | 2017 | Rootletin OS=Homo sapiens | yes | N/A | 0.307 | 0.268 | 0.294 | 6e-44 | |
| Q8CJ40 | 2009 | Rootletin OS=Mus musculus | yes | N/A | 0.307 | 0.269 | 0.293 | 3e-43 | |
| Q9BV73 | 2442 | Centrosome-associated pro | no | N/A | 0.376 | 0.271 | 0.259 | 1e-30 | |
| Q60952 | 2414 | Centrosome-associated pro | no | N/A | 0.282 | 0.206 | 0.270 | 8e-29 | |
| P21249 | 2022 | Major antigen OS=Onchocer | N/A | N/A | 0.258 | 0.225 | 0.228 | 9e-06 |
| >sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1 | Back alignment and function desciption |
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Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 195/662 (29%), Positives = 325/662 (49%), Gaps = 121/662 (18%)
Query: 35 LLRQNSDLQRKLDEESVINRKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELE---LE 91
L+RQ+ +L+R+L EE R+KL+AY+ QQ+QA LV +LQ K+LQYK+RC ELE LE
Sbjct: 137 LVRQSVELRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLE 196
Query: 92 REAPSTSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNTALRRLDDERRENEKLRKM 151
R G L Q LR+ E QDL +AL RL++E++ + L ++
Sbjct: 197 RS--------GELE-----------QQRLRDT--EHSQDLESALIRLEEEQQRSASLAQV 235
Query: 152 NSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYYSSEHAR 211
N++ +EQLD+A N+AL+ D+ K+T DWT R+E+ +E W EE+ FN Y+S+EH+R
Sbjct: 236 NAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAYFSNEHSR 295
Query: 212 LLALWRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQMSGACNGL-VALSAGSSATNA 270
LL LWR VV +R + ++ TE+DL ++ +L +++R + A GL L S A
Sbjct: 296 LLLLWRQVVGFRRLVSEVKMFTERDLLQLGGELARTSRAVQEAGLGLSTGLRLAESRAEA 355
Query: 271 E---------------KDKLVKE-------------NSELKSQVTVLKSENNAMANESKQ 302
+DK+++E ++L ++VT L + ++ +
Sbjct: 356 ALEKQALLQAQLEEQLRDKVLREKDLAQQQMQSDLDKADLSARVTELGLAVKRLEKQNLE 415
Query: 303 KEERVEELLKRIHTLEA-RVEEADQNVLLVEEMQQELELLQNTLRDIARAVIQDAE---- 357
K++ ++L +++ LE+ R++E Q L E+ E LQ TLRD+A+AV+ D+E
Sbjct: 416 KDQVNKDLTEKLEALESLRLQE--QAALETEDG----EGLQQTLRDLAQAVLSDSESGVQ 469
Query: 358 ----------------GKDIPSRPAPLKRHATFSAR-PSTSIKPSVTFRKETKL---ATH 397
G P+P +R + R P P+ + L A H
Sbjct: 470 LSGSERTADASNGSLRGLSGQRTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSALH 529
Query: 398 REQLHT--MKKQYESADESQYNMSQQVT-------SLTSQL----DQTKAQL-----AQV 439
+ QL M+ +YE++ + + +Q++ +L QL D+T + AQ
Sbjct: 530 KRQLQVQDMRGRYEASQDLLGTLRKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQ- 588
Query: 440 GREKEALVKNIEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINESLQSEK 499
RE + L E+L EKS L + + + E L +K+Q L + + L+ E+
Sbjct: 589 -REVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQ 647
Query: 500 -------LFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLE 552
++ EL+R + ++ +L GK + L ++L+ E L A L +++L+
Sbjct: 648 EDAVQDGARVRRELERSHRQLE----QLEGKRSV---LAKELVEVREALSRATLQRDMLQ 700
Query: 553 QNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIE--ANDK-ELQRLQE 609
K E+ L E + ++E M +L + + + + +SK E A DK +L RL
Sbjct: 701 AEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLSALNESLAQDKLDLNRLVA 760
Query: 610 QL 611
QL
Sbjct: 761 QL 762
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Major structural component of the ciliary rootlet, a cytoskeletal-like structure in ciliated cells which originates from the basal body at the proximal end of a cilium and extends proximally toward the cell nucleus. Contributes to centrosome cohesion before mitosis. Homo sapiens (taxid: 9606) |
| >sp|Q8CJ40|CROCC_MOUSE Rootletin OS=Mus musculus GN=Crocc PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9BV73|CP250_HUMAN Centrosome-associated protein CEP250 OS=Homo sapiens GN=CEP250 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus GN=Cep250 PE=1 SV=4 | Back alignment and function description |
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| >sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1760 | ||||||
| 350416642 | 1930 | PREDICTED: rootletin-like [Bombus impati | 0.559 | 0.510 | 0.380 | 1e-162 | |
| 340722374 | 1927 | PREDICTED: rootletin-like [Bombus terres | 0.559 | 0.511 | 0.370 | 1e-153 | |
| 383859854 | 1923 | PREDICTED: rootletin-like [Megachile rot | 0.596 | 0.546 | 0.363 | 1e-153 | |
| 21429746 | 1230 | AT16851p [Drosophila melanogaster] | 0.530 | 0.759 | 0.340 | 1e-124 | |
| 307166040 | 1935 | Rootletin [Camponotus floridanus] | 0.376 | 0.342 | 0.403 | 1e-120 | |
| 242015388 | 1900 | Rootletin, putative [Pediculus humanus c | 0.331 | 0.307 | 0.416 | 1e-116 | |
| 328778424 | 1924 | PREDICTED: rootletin-like [Apis mellifer | 0.325 | 0.297 | 0.442 | 1e-113 | |
| 322783674 | 1935 | hypothetical protein SINV_10610 [Solenop | 0.376 | 0.342 | 0.400 | 1e-113 | |
| 380014502 | 1963 | PREDICTED: LOW QUALITY PROTEIN: rootleti | 0.321 | 0.287 | 0.436 | 1e-111 | |
| 332020813 | 2102 | Rootletin [Acromyrmex echinatior] | 0.372 | 0.311 | 0.389 | 1e-108 |
| >gi|350416642|ref|XP_003491032.1| PREDICTED: rootletin-like [Bombus impatiens] | Back alignment and taxonomy information |
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Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 465/1223 (38%), Positives = 668/1223 (54%), Gaps = 238/1223 (19%)
Query: 562 LAHIEKSKGDVEAEMERLLLDRSDMNEQISKY---------------------------- 593
+AH+ + +GD+ ++ L + +NE++ +
Sbjct: 697 VAHVTRERGDLSNQLSVLARKKETLNEELMRVRQRLEQANEMNGRINRNLEDLVKDNEEK 756
Query: 594 EITIEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQ 653
++ +E N+KE+QRLQEQLAS+RS+KE+LE +LFDTQ++LE VKK QLE E +ELL+KQ
Sbjct: 757 QVLLETNEKEVQRLQEQLASMRSEKETLEGVLFDTQTNLENMHVKKTQLEKEQKELLIKQ 816
Query: 654 ESLKGQVVRLNKELEDTEKRAQETKASLVQQASGLDADYQNQISNLKKQNEECVTKLTEE 713
ESLKGQV RL KELE +EKR E K +L QQ+ +A++Q ISN+KK +E+
Sbjct: 817 ESLKGQVERLMKELESSEKRTHEIKQTLTQQSGDQEAEFQQIISNVKKHSED-------- 868
Query: 714 KINLKKQNEECVTKLTEEKEQVRAALEKKLHATVKQITEEKDCELSRLQANLCQLQSHID 773
N+KK L EEKEQ++ LEK+L ++ Q+T EKD E+++LQ + ++Q HI+
Sbjct: 869 --NIKK--------LNEEKEQIKINLEKRLQQSLLQLTGEKDNEINQLQQRIDEMQQHIE 918
Query: 774 KICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKRESAGRS 833
+CQQHE+ LLRAE DKQQALLIA DQ+A+ ++L VL+E+EEEK ++R+KRE+A R+
Sbjct: 919 NLCQQHEEVLLRAENDKQQALLIAHHDQQALMEKLETVLREMEEEKNNVERMKREAAARA 978
Query: 834 EQDRNTINTLREQLNRTVAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQL 893
EQ+RN N LR++L+R KL+E K + +EEK LE KI +L ERE+ ESEEL+VQL
Sbjct: 979 EQERNNTNQLRDELSRFKTKLDETKLKADEEKIKLELKIEELWKERESAQRESEELQVQL 1038
Query: 894 HLSEDKVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLR 953
H++EDKVD++Q QL ET R+LK+AEN+ E+LRK+L+D + LAD +EK+KY SNK+LR
Sbjct: 1039 HMTEDKVDSLQNQLHETIRKLKDAENLNETLRKELVDIRRQLADCTYEKEKYNSSNKELR 1098
Query: 954 EMVKKVESEKRDQARTIDEGLQKIA----VRFG-DDEKQALRNQLNDQSNDVASLKKELL 1008
E VK++ESEKR+Q+RT++E QKI+ ++ D E+ L+ QL D ++ L+K
Sbjct: 1099 EHVKRIESEKREQSRTLEESYQKISALEDMKLNIDAERSRLQAQLRDMEKEILQLQK--- 1155
Query: 1009 QAEQIRLDLDSEKVTLQEKCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQ 1068
Q+ D + + Q + EKE + + +++++L QV K D+ +
Sbjct: 1156 ---QLHFTQDELQKSHQNNTQAQNDEKELQARLTNETEERERLQLQLHQVKKQLMDVDNS 1212
Query: 1069 LSLLQRKKENVVEDLARLKQKYEQSVEMNNRVNKNLEDLV-----KECEEK--------- 1114
L + + ++L RL+ + + E N R ++LV C E+
Sbjct: 1213 LKVTR-------QELGRLRSRAD---EENERWRVREQELVVRLEDSRCRERKLEDQKHNL 1262
Query: 1115 EVVLLD-------LCARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALR 1167
EV L D L ARLGG+E RVRA L QLE +KKDVE KLSS+ STLRRIA ++
Sbjct: 1263 EVCLADASQQIQELKARLGGSEGRVRALDTQLSQLEMAKKDVEQKLSSVASTLRRIAGIQ 1322
Query: 1168 YHAFYTLSEKEAELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLEAREKSHRQ 1227
+ K +R ++ ++ D H D + D+ + E++ + +S Q
Sbjct: 1323 LDGSVNIPFKLMSPSR---RWSPARAQD-HIDSTRDV----ILDVDPETIRKGV-RSLMQ 1373
Query: 1228 QVNRLENQLDGRASHAGGKMTSPSRRYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQ 1287
QV ++E + D D E+ NL +Q+ +
Sbjct: 1374 QVAQIERERD------------------------------DYKTELC-----NLKKQLVE 1398
Query: 1288 IE--RERDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQT----MRALQ---EEKYALE 1338
+ + R D++ T L I+ L D K +Q Q + ALQ EE L
Sbjct: 1399 TQEIQNRSDMQINT--LLTNIRILQDEKNSLEVKFSQKQSGYEMQLNALQLKTEECEQLR 1456
Query: 1339 TKLSQTKAAANSQSEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGA 1398
K+ + N+ SE Q EKV L+ TLS V EK
Sbjct: 1457 EKIVNLEMMVNNNSEEKTQSE-------EKVDKLKQTLSKVENEK--------------- 1494
Query: 1399 RLDAEKRALQDELSRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCR 1458
R LQ+EL+R+E+R TKLELQR++LEGD QRLQM+ QEK+ N+HKLQER + Q R
Sbjct: 1495 ------RNLQEELNRSESRATKLELQRMSLEGDLQRLQMMFQEKDANIHKLQERNDTQNR 1548
Query: 1459 NITGLEERCTSLKTTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQ 1518
IT LEERCTSLK+TI+QLNLTLE+AS E+EL+ EI +L N+M+ + Q++ EK KQ
Sbjct: 1549 TITSLEERCTSLKSTIEQLNLTLEKASNAESELKNEINSLHHNIMELTTTLQASNEKNKQ 1608
Query: 1519 LQKLLHSAENEKRVLQERLDTCQASLAELRRQQVNRLENQDDLKAMTQALKREIKDLSDA 1578
LQK L + ENE+R+L ER++ Q SL +DLK Q L +I L
Sbjct: 1609 LQKQLSNTENERRILSERIEFLQQSL--------------NDLKHTNQTLTDQITCL--- 1651
Query: 1579 HTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQNELEVKEVARAGLESQLRMSQ 1638
QNEL EV R LESQLR+
Sbjct: 1652 --------------------------------------QNELANNEVQRCALESQLRIIA 1673
Query: 1639 WPSESPMNGGDSEEITKL---CRERSELRNKLENLHDKIQMLR-DQLNSEIKRRQLYIYR 1694
+P E N D E + +L RERSE+R K+E L+DK+++L D+ N E RQL +++
Sbjct: 1674 YPQEENTN-KDEELLRQLQIAQRERSEMRGKMEALNDKMKLLEADKRNLE---RQLSLFK 1729
Query: 1695 DTRAGKEMQQLRQA----LGDSL 1713
T K ++ +A LG S
Sbjct: 1730 STSRSKSYERSEKAHMELLGTSF 1752
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Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722374|ref|XP_003399581.1| PREDICTED: rootletin-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|383859854|ref|XP_003705407.1| PREDICTED: rootletin-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|21429746|gb|AAM50551.1| AT16851p [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|307166040|gb|EFN60317.1| Rootletin [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|242015388|ref|XP_002428341.1| Rootletin, putative [Pediculus humanus corporis] gi|212512937|gb|EEB15603.1| Rootletin, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|328778424|ref|XP_624402.2| PREDICTED: rootletin-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|322783674|gb|EFZ11012.1| hypothetical protein SINV_10610 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|380014502|ref|XP_003691268.1| PREDICTED: LOW QUALITY PROTEIN: rootletin-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|332020813|gb|EGI61211.1| Rootletin [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1760 | ||||||
| UNIPROTKB|Q5TZA2 | 2017 | CROCC "Rootletin" [Homo sapien | 0.806 | 0.704 | 0.223 | 1.2e-101 | |
| UNIPROTKB|J9P8I1 | 2015 | CROCC "Uncharacterized protein | 0.722 | 0.631 | 0.239 | 5.7e-101 | |
| FB|FBgn0039152 | 2048 | Rootletin "Rootletin" [Drosoph | 0.817 | 0.702 | 0.230 | 1.1e-99 | |
| MGI|MGI:3529431 | 2009 | Crocc "ciliary rootlet coiled- | 0.676 | 0.592 | 0.237 | 2.4e-99 | |
| UNIPROTKB|F1Q2C0 | 2018 | CROCC "Uncharacterized protein | 0.722 | 0.630 | 0.238 | 1.4e-98 | |
| RGD|1305364 | 1991 | Crocc "ciliary rootlet coiled- | 0.676 | 0.597 | 0.232 | 5.5e-98 | |
| UNIPROTKB|D4AD05 | 1846 | Crocc "Uncharacterized protein | 0.684 | 0.652 | 0.227 | 2.4e-85 | |
| UNIPROTKB|B1AKD8 | 1898 | CROCC "Rootletin" [Homo sapien | 0.806 | 0.748 | 0.223 | 2.4e-66 | |
| UNIPROTKB|E1BBS9 | 1984 | CROCC "Uncharacterized protein | 0.735 | 0.652 | 0.230 | 1.4e-61 | |
| MGI|MGI:108084 | 2414 | Cep250 "centrosomal protein 25 | 0.848 | 0.618 | 0.212 | 8.2e-49 |
| UNIPROTKB|Q5TZA2 CROCC "Rootletin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.2e-101, Sum P(2) = 1.2e-101
Identities = 346/1546 (22%), Positives = 677/1546 (43%)
Query: 159 LDEAHHTNEALTNDLEK--LTTDWTHLREEMAMKEKDWIEEEQYFNDYYSS-EHARLLAL 215
L E + + +DL+K L+ T L + EK +E++Q D E L L
Sbjct: 376 LREKDLAQQQMQSDLDKADLSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRL 435
Query: 216 WRDVVDIKRSFTAMQSATEQDLSK-IRSDLNQSTRQMSG------ACNG-LVALSAGSSA 267
+Q T +DL++ + SD ++S Q+SG A NG L LS +
Sbjct: 436 QEQAALETEDGEGLQQ-TLRDLAQAVLSD-SESGVQLSGSERTADASNGSLRGLSGQRTP 493
Query: 268 TNAEKDKLVKENSELKSQVTVLKSENN-AMANESKQKEE-RVEELLKRIHTLEARVEEAD 325
+ + + S + + A+ + + K + +V+++ R + +
Sbjct: 494 SPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLLGTLR 553
Query: 326 XXXXXXXXXXXXXXXXXXTLRDIARAVIQDAEGKDIPSRPAPLKRHATFSARPSTSIKPS 385
LRD +Q E D L+ +R +++ S
Sbjct: 554 KQLSDSESERRALEEQLQRLRDKTDGAMQAHE--DAQREVQRLRSANELLSREKSNLAHS 611
Query: 386 --VTFRKETKLATHREQLHT----MKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQV 439
V ++ +L RE+L +++Q + +E Q + Q + +L+++ QL Q+
Sbjct: 612 LQVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQL 671
Query: 440 GREKEALVKNIEMLR-------VEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKIN 492
++ L K + +R +++ L+ K E+ E + + +++ + ++L
Sbjct: 672 EGKRSVLAKELVEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEE 731
Query: 493 ESLQSE--KLFLQNE--------LDRINSDMDAREVELRGKEDMNRRLREDLLIANEDXX 542
SLQ KL NE L+R+ + ++ + L+G++ R+ ++ +A E+
Sbjct: 732 ASLQDSLSKLSALNESLAQDKLDLNRLVAQLEEEKSALQGRQ---RQAEQEATVAREEQE 788
Query: 543 XXXXXXXXXXQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDK 602
++ ++ L E+++ +E ++ L +RS + EQ+++ + ++
Sbjct: 789 RLEELRLEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQLSRQLSGREQ 848
Query: 603 ELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDXXXXXXXXXXXXXXXXXXSLKGQVVR 662
EL++ + + + E+LE + ++ ++ S + +R
Sbjct: 849 ELEQARREA---QRQVEALERAAREKEALAKEH--AGLAVQLVAAEREGRTLSEEATRLR 903
Query: 663 LNKE-LEDTEKRAQETKASLVQQASGLDADYQNQI-------SNLKKQNEECVTKLTEEK 714
L KE LE + Q A L + L+A+ Q + L ++ + T+EK
Sbjct: 904 LEKEALEGSLFEVQRQLAQLEARREQLEAEGQALLLAKETLTGELAGLRQQIIA--TQEK 961
Query: 715 INLKKQNEECVTKLTEEKEQVRAALEKKLHA---TVKQITEEKDCELSRLQANLCQLQSH 771
+L K E KL + + + +A+L ++ A ++++ EK+ L+A QLQS
Sbjct: 962 ASLDK--ELMAQKLVQAEREAQASLREQRAAHEEDLQRLQREKEAAWRELEAERAQLQSQ 1019
Query: 772 IDKICQQHEDALLRAEGDKQQALLIAQQDQKAIQDRLSQVLKELEEEKCTLDRIKR-ESA 830
+ + + E+ L R E +K++ ++ A+Q + L E EK +K E
Sbjct: 1020 LQR---EQEELLARLEAEKEEL----SEEIAALQQERDEGLLLAESEKQQALSLKESEKT 1072
Query: 831 GRSEQ---DRNTINTLREQLNRTVAXXXXXXXXXXXXXAILERKISDLKSERE-ALVTES 886
SE+ R+++ T+ ++ R L ++ DL+++RE A +
Sbjct: 1073 ALSEKLMGTRHSLATISLEMERQKRDAQSRQEQDRSTVNALTSELRDLRAQREEAAAAHA 1132
Query: 887 EELKVQLHLSED---KVDTVQAQLLETARRLKEAENVGESLRKDLLDTKTHLADSNFEKD 943
+E++ + D + D+ + E +L+ E+ + LR++LL+ + L +S ++
Sbjct: 1133 QEVRRLQEQARDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGRE 1192
Query: 944 KYAKSNKDLREMVKKVESEKRDQARTIDEGLQKIAVRFGDDEKQALRNQLNDQSNDVASL 1003
+ +LR + + E R+ R +E L+ AV+ + E+ +L+ D+ +A L
Sbjct: 1193 VQRQEAGELRRSLGEGAKE-REALRRSNEELRS-AVKKAESERISLKLANEDKEQKLALL 1250
Query: 1004 KKELLQAEQIRLDLDSEKVTLQE-KCKFLEIEKEKYNFVISYLLCLFQVEVELSQVTKDR 1062
+ E A + + + LQE + LE +E + ++ E +++ ++
Sbjct: 1251 E-EARTA--VGKEAGELRTGLQEVERSRLEARRELQELRRQMKM----LDSENTRLGREL 1303
Query: 1063 SDLSHQLSLLQR-KKENVVEDLARLKQ---KYEQSVEMNNRVNKNXXXXXXXXXXXXXXX 1118
++L +L+L +R +KE+ E L L+Q K E S+E+ + +
Sbjct: 1304 AELQGRLALGERAEKESRRETLG-LRQRLLKGEASLEV---MRQELQVAQRKLQEQEGEF 1359
Query: 1119 XXXXARLGGAEERVRASSAHLLQLEASKKDVEHKLSSIGSTLRRIAALRYHAFYTLSEK- 1177
RL G+ E R + QL+ ++ +E KL + + + LR A ++
Sbjct: 1360 RTRERRLLGSLEEARGTEKQ--QLDHAR-GLELKLEAARAEAAELG-LRLSAAEGRAQGL 1415
Query: 1178 EAELARIRAQYDAYKSMDCHTDRSSDLERYRAAQLHAESLLEAREKSHRQQVNRLENQLD 1237
EAELAR+ Q A ++ L R+A L A + R D
Sbjct: 1416 EAELARVEVQRRAAEAQ---------LGGLRSALRRGLGLGRAPSPAPRPVPGSPAR--D 1464
Query: 1238 GRASHAGGKMTSPSR------RYSPVRGGEGGEGLIDVDPEIVRKGVRNLMQQVAQIERE 1291
A +G + SPS P G D+DPE VR +R +Q++ +RE
Sbjct: 1465 APAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRE 1524
Query: 1292 RDDLKAMTQALKREIKDLSDAHTQESNKMAQAQQTMRALQEEKYALETKLSQTKAAANSQ 1351
RD+L+ T AL R++ ++ +++ Q Q+ + +E + +++ +LS +A Q
Sbjct: 1525 RDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQ 1584
Query: 1352 SEAMDQKNEELQHLREKVLTLELTLSNVSEEKSQGDDKLMKCRESGARLDAEKRALQDEL 1411
E++ + E + ++V TLE +L E +K+ K + + +L+ +KR L++ L
Sbjct: 1585 EESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVL 1644
Query: 1412 SRTEARVTKLELQRVALEGDQQRLQMLLQEKETNLHKLQERCEHQCRNITGLEERCTSLK 1471
+E+R KLELQR +LEG+ QR ++ L ++E LQ+R + R + E + +L+
Sbjct: 1645 DASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQ 1704
Query: 1472 TTIDQLNLTLERASAGETELRGEIQTLQRNLMDTSLNSQSNCEKLKQLQKLLHSAENEKR 1531
T+++LN L + E LR +++ L L +S + S +K LQK L + E++++
Sbjct: 1705 LTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHDRQ 1764
Query: 1532 VLQERLDTCQASLAELRRQ------QVNRLENQ-DDLKAMTQALKREIKDLSDAHTQESN 1584
VLQERLD + +L+E R+Q QV L + DL+ + +++ L + Q
Sbjct: 1765 VLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQE 1824
Query: 1585 KMAQAQQTMRALQEEKYALETKLSQTKAAANSQNELEVKEVARAGL 1630
A A T++ LQ+E+ L+ +L + A +Q E E +EV R+ L
Sbjct: 1825 GEAAALNTVQKLQDERRLLQERLGSLQRAL-AQLEAEKREVERSAL 1869
|
|
| UNIPROTKB|J9P8I1 CROCC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0039152 Rootletin "Rootletin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:3529431 Crocc "ciliary rootlet coiled-coil, rootletin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q2C0 CROCC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| RGD|1305364 Crocc "ciliary rootlet coiled-coil, rootletin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|D4AD05 Crocc "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B1AKD8 CROCC "Rootletin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BBS9 CROCC "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:108084 Cep250 "centrosomal protein 250" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1760 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-18 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-18 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-14 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-14 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-13 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-12 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-12 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-06 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 3e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-05 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 3e-05 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 4e-05 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 4e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-05 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 6e-05 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 6e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| PRK11281 | 1113 | PRK11281, PRK11281, hypothetical protein; Provisio | 1e-04 | |
| pfam04156 | 186 | pfam04156, IncA, IncA protein | 1e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 4e-04 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 4e-04 | |
| COG1579 | 239 | COG1579, COG1579, Zn-ribbon protein, possibly nucl | 5e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 5e-04 | |
| pfam05622 | 713 | pfam05622, HOOK, HOOK protein | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-04 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 7e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 8e-04 | |
| PRK10929 | 1109 | PRK10929, PRK10929, putative mechanosensitive chan | 8e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.002 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.003 | |
| pfam05483 | 787 | pfam05483, SCP-1, Synaptonemal complex protein 1 ( | 0.003 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.004 | |
| PHA02562 | 562 | PHA02562, 46, endonuclease subunit; Provisional | 0.004 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-18
Identities = 162/802 (20%), Positives = 320/802 (39%), Gaps = 79/802 (9%)
Query: 421 QVTSLTSQLDQTKAQLAQVGREKEA----LVKNIEMLRVEKSALEKNKREINEMVESLNS 476
Q+ SL Q ++ + +E LV +E LR E L++ +E E +E L +
Sbjct: 201 QLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTA 260
Query: 477 NLDKVQKNNSRLSKINESLQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLI 536
L ++++ L L+ E LQ EL + +++ E + + + L L
Sbjct: 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
Query: 537 ANEDLKNAKLAKELLEQNKEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEIT 596
L+ + + L + E++ L +++ +EAE+E L + ++ ++ + E
Sbjct: 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
Query: 597 IEANDKELQRLQEQLASLRSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESL 656
+E ++ +L+ Q+ASL ++ E LEA L + E+ + E+L +++E + + L
Sbjct: 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKEL 438
Query: 657 KGQVVRLNKELEDTEKRAQETKASL-------------VQQASGLDADYQNQISNLKKQN 703
+ ++ L +ELE+ ++ + + +L + A A Q ++ +L++
Sbjct: 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
Query: 704 EECVTKLTEEKINLKKQNEE-----CVTKLTEEKEQVRAALEKKLHATVKQITEEKD--- 755
E K LK Q+ +++L E AA+E L ++ + E
Sbjct: 499 ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAA 558
Query: 756 -------CELSRLQANLCQLQSHID-KICQQHEDALLRAEGDKQQALLIAQQD---QKAI 804
+ + L S +I + L EG A + + D +KA+
Sbjct: 559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
Query: 805 QDRLSQVL------------KELEEEK--CTLDRIKRESAGRSEQDRNTINTLREQLNRT 850
L VL K+L TLD G N+ + R
Sbjct: 619 SYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRRE 678
Query: 851 VAKLEELKTRTEEEKAILERKISDLKSEREALVTESEELKVQLHLSEDKVDTVQAQLLET 910
+ +LEE EE+ A LE+ +++L+ E E L E E+L+ +L ++ ++
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD---- 734
Query: 911 ARRLKEAENVGESLRKDLLDTKTHLADSNFEKDKYAKSNKDLREMVKKVESEKRDQARTI 970
L E E L + + L + E ++ + ++ E + + E+E + I
Sbjct: 735 ---LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Query: 971 DEGLQKIAVRFGDDEKQALRNQLNDQSNDVASLKKELLQAEQIRLDLDSEKVTLQEKCKF 1030
++ +E +ALR L++ ++ L +E + L+ + + +
Sbjct: 792 EQLK---------EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
Query: 1031 LEIEKEKYNFVISYLLCLFQVEVELSQVTKDRSDLSHQLSLLQRKKENVVEDLARLKQKY 1090
LE + E+ + I + E+ ++ + +L +L L ++ ++ E LA L+ +
Sbjct: 843 LEEQIEELSEDIE------SLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
Query: 1091 EQSVEMNNRVNKNLEDLVKECEEKEVVLLDLCARLGGAEERV-----RASSAHLLQLEAS 1145
E+ E + +L +E EE L L RL G E R+ R S + L LE +
Sbjct: 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
Query: 1146 KKDVEHKLSSIGSTLRRIAALR 1167
+ RR+ L
Sbjct: 957 EALENKIEDDEEEARRRLKRLE 978
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217933 pfam04156, IncA, IncA protein | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|218661 pfam05622, HOOK, HOOK protein | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1) | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1760 | |||
| PF15035 | 182 | Rootletin: Ciliary rootlet component, centrosome c | 100.0 | |
| KOG0161|consensus | 1930 | 99.97 | ||
| KOG0161|consensus | 1930 | 99.96 | ||
| KOG4674|consensus | 1822 | 99.91 | ||
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.85 | |
| KOG4674|consensus | 1822 | 99.85 | ||
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.83 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.81 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.81 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.8 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.79 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.77 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.77 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.69 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.68 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.61 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.56 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.52 | |
| KOG0996|consensus | 1293 | 99.49 | ||
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.47 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.38 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.38 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.36 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.31 | |
| KOG0250|consensus | 1074 | 99.15 | ||
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.12 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 99.08 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.9 | |
| KOG0996|consensus | 1293 | 98.9 | ||
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 98.87 | |
| KOG0250|consensus | 1074 | 98.84 | ||
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.78 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.78 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.74 | |
| KOG0933|consensus | 1174 | 98.7 | ||
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.68 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.61 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 98.52 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.43 | |
| KOG0964|consensus | 1200 | 98.34 | ||
| KOG4673|consensus | 961 | 98.31 | ||
| KOG4643|consensus | 1195 | 98.26 | ||
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.25 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.22 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.21 | |
| KOG0994|consensus | 1758 | 98.16 | ||
| KOG0976|consensus | 1265 | 98.14 | ||
| KOG4673|consensus | 961 | 98.1 | ||
| KOG0977|consensus | 546 | 98.08 | ||
| KOG4643|consensus | 1195 | 98.05 | ||
| KOG0977|consensus | 546 | 98.0 | ||
| KOG0978|consensus | 698 | 97.93 | ||
| KOG0978|consensus | 698 | 97.93 | ||
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.92 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.9 | |
| KOG0995|consensus | 581 | 97.89 | ||
| PF13514 | 1111 | AAA_27: AAA domain | 97.87 | |
| KOG0018|consensus | 1141 | 97.85 | ||
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 97.85 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.84 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 97.81 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.76 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.75 | |
| PF13514 | 1111 | AAA_27: AAA domain | 97.75 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.72 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.71 | |
| KOG0964|consensus | 1200 | 97.67 | ||
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.66 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.64 | |
| KOG1029|consensus | 1118 | 97.61 | ||
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.6 | |
| KOG0933|consensus | 1174 | 97.6 | ||
| KOG0995|consensus | 581 | 97.5 | ||
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.43 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 97.42 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.4 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.36 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 97.35 | |
| KOG1029|consensus | 1118 | 97.35 | ||
| PRK11637 | 428 | AmiB activator; Provisional | 97.34 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.21 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 96.96 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 96.95 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 96.87 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 96.81 | |
| KOG0999|consensus | 772 | 96.8 | ||
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.72 | |
| KOG0980|consensus | 980 | 96.7 | ||
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 96.65 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 96.64 | |
| KOG0980|consensus | 980 | 96.58 | ||
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.55 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 96.55 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 96.53 | |
| KOG0962|consensus | 1294 | 96.48 | ||
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 96.33 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.31 | |
| KOG0976|consensus | 1265 | 96.26 | ||
| KOG0994|consensus | 1758 | 96.25 | ||
| KOG0946|consensus | 970 | 96.24 | ||
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 96.24 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.2 | |
| KOG0018|consensus | 1141 | 96.17 | ||
| KOG1003|consensus | 205 | 96.13 | ||
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.11 | |
| KOG0963|consensus | 629 | 96.08 | ||
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 96.01 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 95.95 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.94 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 95.92 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 95.92 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.89 | |
| KOG1003|consensus | 205 | 95.88 | ||
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 95.8 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.77 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 95.74 | |
| KOG4593|consensus | 716 | 95.72 | ||
| PRK09039 | 343 | hypothetical protein; Validated | 95.69 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 95.68 | |
| KOG0946|consensus | 970 | 95.56 | ||
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.55 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.48 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.4 | |
| KOG4807|consensus | 593 | 95.4 | ||
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 95.33 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.17 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 95.13 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 95.11 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 95.09 | |
| KOG0612|consensus | 1317 | 95.01 | ||
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.89 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 94.69 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 94.54 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 94.42 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 94.4 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 94.35 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 94.21 | |
| KOG1853|consensus | 333 | 94.14 | ||
| KOG0979|consensus | 1072 | 94.14 | ||
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 94.1 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 94.03 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 93.9 | |
| KOG4593|consensus | 716 | 93.89 | ||
| KOG0962|consensus | 1294 | 93.73 | ||
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 93.67 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.63 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.57 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 93.54 | |
| KOG0999|consensus | 772 | 93.54 | ||
| KOG0612|consensus | 1317 | 93.4 | ||
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 93.33 | |
| KOG0971|consensus | 1243 | 93.31 | ||
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 93.06 | |
| KOG1853|consensus | 333 | 92.98 | ||
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 92.85 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 92.79 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 92.74 | |
| PF12037 | 276 | DUF3523: Domain of unknown function (DUF3523); Int | 92.54 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 92.38 | |
| PF09304 | 107 | Cortex-I_coil: Cortexillin I, coiled coil; InterPr | 92.27 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 91.99 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 91.85 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 91.79 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 91.75 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 91.58 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 90.97 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 90.95 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 90.61 | |
| PF09304 | 107 | Cortex-I_coil: Cortexillin I, coiled coil; InterPr | 90.2 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 90.12 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 90.12 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 90.08 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 89.87 | |
| KOG0993|consensus | 542 | 89.64 | ||
| PF14073 | 178 | Cep57_CLD: Centrosome localisation domain of Cep57 | 89.59 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 89.51 | |
| TIGR02977 | 219 | phageshock_pspA phage shock protein A. Members of | 89.49 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 89.29 | |
| PF12795 | 240 | MscS_porin: Mechanosensitive ion channel porin dom | 88.87 | |
| PF05384 | 159 | DegS: Sensor protein DegS; InterPro: IPR008595 Thi | 88.61 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 88.33 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 88.22 | |
| KOG0982|consensus | 502 | 88.19 | ||
| KOG4360|consensus | 596 | 87.98 | ||
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 87.77 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 86.9 | |
| PF04582 | 326 | Reo_sigmaC: Reovirus sigma C capsid protein; Inter | 86.87 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 86.67 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 86.55 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 86.43 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 86.27 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 85.71 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 85.38 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 85.3 | |
| PRK10698 | 222 | phage shock protein PspA; Provisional | 85.2 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 85.14 | |
| KOG0971|consensus | 1243 | 84.88 | ||
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 84.67 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.48 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 84.25 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 84.03 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 83.67 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 83.16 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 82.62 | |
| KOG0804|consensus | 493 | 82.56 | ||
| PF11932 | 251 | DUF3450: Protein of unknown function (DUF3450); In | 82.55 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 82.37 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 82.35 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 82.35 | |
| PF06785 | 401 | UPF0242: Uncharacterised protein family (UPF0242); | 82.26 | |
| KOG0963|consensus | 629 | 82.21 | ||
| KOG4360|consensus | 596 | 82.2 | ||
| PF06785 | 401 | UPF0242: Uncharacterised protein family (UPF0242); | 81.81 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 81.73 | |
| KOG0992|consensus | 613 | 80.35 |
| >PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=457.97 Aligned_cols=182 Identities=47% Similarity=0.831 Sum_probs=167.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhHHHHHhhhhHHHhhhcCCCCCCCCCCCCCCCCCCchhhhhHhHHHhhhhhhhhHHH
Q psy11582 54 RKKLEAYRTSQQQQAALVSKLQAKLLQYKQRCKELELEREAPSTSSYLGPLPSTPLPSALDAAQAHLREMREERIQDLNT 133 (1760)
Q Consensus 54 krkl~a~~e~Qq~qA~Lv~~LQaKVlqYr~rc~elE~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~r~e~~~dle~ 133 (1760)
|+||+||++||++||+||++||+||+|||+||++||+++.+.+... +|.+. +....++++||+.
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~-------~~~~~---------~~~~~e~s~dLe~ 64 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLE-------SPSQR---------RRSEEEHSPDLEE 64 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC-------ccccc---------ccccccCcccHHH
Confidence 6899999999999999999999999999999999999996552221 11111 1123567899999
Q ss_pred HHHhhHHHHHhhHhHHHhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q psy11582 134 ALRRLDDERRENEKLRKMNSVYKEQLDEAHHTNEALTNDLEKLTTDWTHLREEMAMKEKDWIEEEQYFNDYYSSEHARLL 213 (1760)
Q Consensus 134 aL~rLEeEqqR~e~L~qvN~~LReQLeqa~~~N~aL~~dl~klt~dw~~~r~EL~~KE~~wr~ee~~f~~Y~~~Eh~rlL 213 (1760)
+|+|||||++||++|++||+|||+|||+++.+|++|++||+|||+||.++++||+.||..|++|+++|++||++||+|||
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll 144 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLL 144 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhHhhHhhHHHhHHHHHHHhhHH
Q psy11582 214 ALWRDVVDIKRSFTAMQSATEQDLSKIRSDLNQSTRQM 251 (1760)
Q Consensus 214 ~LWRevv~~Rr~f~E~ksaTeRdL~~~r~E~~r~sr~l 251 (1760)
.|||+||+|||+|+|||++|||||++||+||+|++|+|
T Consensus 145 ~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 145 SLWREVVALRRQFAELRTATERDLSDMRAEFARTSRSV 182 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999975
|
|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG4674|consensus | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >KOG0977|consensus | Back alignment and domain information |
|---|
| >KOG0978|consensus | Back alignment and domain information |
|---|
| >KOG0978|consensus | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0018|consensus | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0964|consensus | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG0999|consensus | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0962|consensus | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >KOG0946|consensus | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0018|consensus | Back alignment and domain information |
|---|
| >KOG1003|consensus | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >KOG0963|consensus | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG1003|consensus | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4593|consensus | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0946|consensus | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG4807|consensus | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >KOG1853|consensus | Back alignment and domain information |
|---|
| >KOG0979|consensus | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG4593|consensus | Back alignment and domain information |
|---|
| >KOG0962|consensus | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >KOG0999|consensus | Back alignment and domain information |
|---|
| >KOG0612|consensus | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1853|consensus | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >KOG0993|consensus | Back alignment and domain information |
|---|
| >PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >TIGR02977 phageshock_pspA phage shock protein A | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF12795 MscS_porin: Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
| >PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >KOG0982|consensus | Back alignment and domain information |
|---|
| >KOG4360|consensus | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PRK10698 phage shock protein PspA; Provisional | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0804|consensus | Back alignment and domain information |
|---|
| >PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0963|consensus | Back alignment and domain information |
|---|
| >KOG4360|consensus | Back alignment and domain information |
|---|
| >PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0992|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-20
Identities = 56/331 (16%), Positives = 125/331 (37%), Gaps = 21/331 (6%)
Query: 389 RKETKLATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQLAQVGREKEALVK 448
K+ +L +E+ + + + ++ + ++ L +L A+ + L
Sbjct: 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920
Query: 449 N--------------IEMLRVEKSALEKNKREINEMVESLNSNLDKVQKNNSRLSKINES 494
IE L+ K+++ + + L L++ + +L +
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 495 LQSEKLFLQNELDRINSDMDAREVELRGKEDMNRRLREDLLIANEDLKNAKLAKELLEQN 554
+ +++++ + + E + E+ L +L E KN K E
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 555 KEEMQTLLAHIEKSKGDVEAEMERLLLDRSDMNEQISKYEITIEANDKELQRLQEQLASL 614
E++ L EKS+ ++E +L + SD++EQI++ + ++ L+ QLA
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ-------AQIAELKAQLAKK 1093
Query: 615 RSDKESLEAILFDTQSHLEQSDVKKEQLEHEVQELLVKQESLKGQVVRLNKELEDTEKRA 674
+ ++ A L D S + K +LE + +L ES K + K+ D +
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 675 QETKASLVQQASGLDADYQNQISNLKKQNEE 705
+ K L + + S+ K +++
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1760 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 99.19 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.74 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.64 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 97.08 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.86 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 96.67 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.62 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 96.47 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.12 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.65 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 95.37 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.9 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 93.89 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 93.65 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 93.6 | |
| 3q8t_A | 96 | Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 | 93.02 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 92.37 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 91.33 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 91.15 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 91.04 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 90.19 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 88.46 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 87.46 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 85.58 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 85.37 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 83.97 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 83.36 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 83.25 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 83.19 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 81.18 | |
| 3q8t_A | 96 | Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 | 81.03 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 80.99 | |
| 2e7s_A | 135 | RAB guanine nucleotide exchange factor SEC2; coile | 80.21 | |
| 2no2_A | 107 | HIP-I, huntingtin-interacting protein 1; clathrin | 80.11 | |
| 3swk_A | 86 | Vimentin; cytoskeleton, intermediate filament, alp | 80.05 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-07 Score=101.87 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11582 395 ATHREQLHTMKKQYESADESQYNMSQQVTSLTSQLDQTKAQ 435 (1760)
Q Consensus 395 estqe~L~rLrdqL~EvE~e~r~Le~QaqkLk~El~~l~~~ 435 (1760)
.+.+..+..+...+.+++..+..+...+..+...+..+...
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 49 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKK 49 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333333333
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
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| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00