Psyllid ID: psy11600

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK
Secondary Structure (PSIPRED)
cccccccEEHHHHHHHHHcHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHcccccccEEEEccccccccHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccccccccHHHHHcccccEEEcccccccHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEccEHHHccHHHHHHHHHHHHHcccccEEEEEEEccccccEcccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccccccccccccHHHccccEEEEEcccccccHHHHHHHHHcccEEEEEEccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHc
Coil and Loop (DISEMBL)
mshvqcmigpsilnsdlsnlhsESQNLLdsgadylhldvmdgtfvpnltfghpvVKCLRNKIPKAFFEThmmvqnpqqwiepmadanvdqytfhvepvdnvPQVIRQIKEAGMKVGQVLQDWIepmadanvdqytfhvepvdnvPQVIRQIKEAGMKvglaikpktpVDVIAEYIESADLVLIMtvepgfggqkfmqdmmpkvkwlrenyptlnievdggvgpntiDECAKCltgfggqkfmqdmmpkvkwlrenyptlnievdggvgpntidecak
Flexible Loop (DISEMBL)
MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAgmkvglaikpktpVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTlnievdggvgpntidecak
Low Complexity Region (SEG)
MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK
Disordered region (IsUnstruct)
**************************LLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV**********
Disordered Region (DISOPRED)
****QCM*GPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEV***VG*********
Disordered Region (DISEMBL)
MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK
Disordered Region (DISPRO)
***VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID*C*K
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q8VEE0	228	Ribulose-phosphate 3-epim	yes	N/A	0.664	0.807	0.513	1e-60
Q96AT9	228	Ribulose-phosphate 3-epim	yes	N/A	0.664	0.807	0.508	3e-60
Q5R5Y2	228	Ribulose-phosphate 3-epim	yes	N/A	0.664	0.807	0.504	1e-59
P46969	238	Ribulose-phosphate 3-epim	yes	N/A	0.667	0.777	0.408	1e-46
Q6FL81	246	Ribulose-phosphate 3-epim	yes	N/A	0.671	0.756	0.405	4e-46
Q755M2	239	Ribulose-phosphate 3-epim	yes	N/A	0.671	0.778	0.405	2e-45
Q9SE42	228	Ribulose-phosphate 3-epim	yes	N/A	0.653	0.793	0.419	4e-45
O14105	228	Ribulose-phosphate 3-epim	yes	N/A	0.664	0.807	0.419	2e-43
P65760	229	Ribulose-phosphate 3-epim	yes	N/A	0.642	0.777	0.340	2e-30
P65761	229	Ribulose-phosphate 3-epim	yes	N/A	0.642	0.777	0.340	2e-30

>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 147/228 (64%), Gaps = 44/228 (19%)

Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
           C IGPSILNSDL+NL +E   +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ + 
Sbjct: 5   CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64

Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
            FF+ HMMV  P+Q                                           W++
Sbjct: 65  PFFDMHMMVSRPEQ-------------------------------------------WVK 81

Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
           PMA A  +QYTFH+E  +N   +I+ I+E GMKVGLAIKP T V+ +A +    D+ L+M
Sbjct: 82  PMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVM 141

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQKFM+DMMPKV WLR  +PTL+IEVDGGVGP+T+ +CA+ 
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEA 189

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1

>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 147/228 (64%), Gaps = 44/228 (19%)

Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
           C IGPSILNSDL+NL +E   +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ + 
Sbjct: 5   CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64

Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
            FF+ HMMV  P+QW++PMA A  +QYTFH+E  +N   +I+ I+E GMKV         
Sbjct: 65  PFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKV--------- 115

Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
                                             GLAIKP T V+ +A +    D+ L+M
Sbjct: 116 ----------------------------------GLAIKPGTSVEYLAPWANQIDMALVM 141

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+ 
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 189

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 146/228 (64%), Gaps = 44/228 (19%)

Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
           C IGPSILNSDL+NL +E   +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ + 
Sbjct: 5   CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64

Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
            FF+ HMMV  P+QW++PMA A  +QY FH+E  +N   +I+ I+E GMKV         
Sbjct: 65  PFFDMHMMVSKPEQWVKPMAVAGANQYAFHLEATENPGALIKDIRENGMKV--------- 115

Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
                                             GLAIKP T V+ +A +    D+ L+M
Sbjct: 116 ----------------------------------GLAIKPGTSVEYLAPWANQIDMALVM 141

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+ 
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 189

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 132/240 (55%), Gaps = 55/240 (22%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           V+ +I PSIL SD +NL  E   ++++GAD+LH+DVMDG FVPN+T G P+V  LR  +P
Sbjct: 2   VKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVP 61

Query: 64  K------------AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA 111
           +            AFF+ HMMV+NP++                                 
Sbjct: 62  RPGDASNTEKKPTAFFDCHMMVENPEK--------------------------------- 88

Query: 112 GMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVI 171
                     W++  A    DQ+TFH E   +   +++ IK  G+K   AIKP T VDV+
Sbjct: 89  ----------WVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAIKPGTSVDVL 138

Query: 172 AEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
            E     D+ L+MTVEPGFGGQKFM+DMMPKV+ LR  +P LNI+VDGG+G  TI + AK
Sbjct: 139 FELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAK 198

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate (By similarity). Involved in the protective response to oxidative stress.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPE1 PE=3 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 131/244 (53%), Gaps = 58/244 (23%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           V+ +I PSIL SD +NL  E   +++SGA++LH+DVMDG FVPN+T G P+V  LR  +P
Sbjct: 2   VKPIIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVP 61

Query: 64  K---------------AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQI 108
           +               AFF+ HMMV+ P++                              
Sbjct: 62  RSQEEEKASGEVARPTAFFDCHMMVEEPEK------------------------------ 91

Query: 109 KEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPV 168
                        W+   A A  DQ+TFH E   +   +++ IKE G+K   AIKP TPV
Sbjct: 92  -------------WVADFAKAGADQFTFHYEATKDPLSLVKLIKENGIKAACAIKPGTPV 138

Query: 169 DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE 228
           DV+ E     D+ L+MTVEPGFGGQKFM DMMPKV+ LR  +P +NI+VDGG+G  TI  
Sbjct: 139 DVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPKVEALRTKFPHMNIQVDGGLGKETIGV 198

Query: 229 CAKC 232
            AK 
Sbjct: 199 AAKA 202

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1 PE=3 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 130/239 (54%), Gaps = 53/239 (22%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           V+ +I PSIL SD +NL      ++++GA++LH+DVMDG FVPN+T G P+VK LR  +P
Sbjct: 2   VKPIIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVP 61

Query: 64  ----------KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM 113
                     KAFF+ HMMV  P++                                   
Sbjct: 62  RVGDKESDKPKAFFDCHMMVAEPEK----------------------------------- 86

Query: 114 KVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAE 173
                   W++   +   DQ+TFH E   N  ++++ IK  G++   AIKP TPVDV+ E
Sbjct: 87  --------WVDVFVENGADQFTFHYEATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFE 138

Query: 174 YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
                D+ L+MTVEPGFGGQKFM DMMPKV  LRE +P L+I+VDGG+G  TI   AK 
Sbjct: 139 LAPYLDMALVMTVEPGFGGQKFMPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAAKA 197

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 48/229 (20%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PS+L+SD +NL +E+  ++  GAD+LH+D+MDG FVPNLT G PV++ LR K  KA+ 
Sbjct: 9   IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-KHTKAYL 67

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV NP                                            D++EP+A
Sbjct: 68  DCHLMVTNPS-------------------------------------------DYVEPLA 84

Query: 128 DANVDQYTFHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLVLI 183
            A    +TFH+E   DN  ++I+ IK  GM+ G++++P TPV+ +   +E+    +LVL+
Sbjct: 85  KAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLV 144

Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A  
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA 193

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 128/229 (55%), Gaps = 45/229 (19%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           VQ  I PS+L  D +NL  E   +L  G+D+LH+DVMD  FVPNLT G  VVK +RN   
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYT 61

Query: 64  K--AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQD 121
           K  AFF+ H+MV  P+++I        DQ                               
Sbjct: 62  KEEAFFDCHLMVIEPERYI--------DQ------------------------------- 82

Query: 122 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLV 181
               +ADA    + FH E  +   ++I +  E GM VG A+KPKTPV+VI  ++E  D+V
Sbjct: 83  ----LADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMV 138

Query: 182 LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
           L+MTVEPG GGQ FM + +PKV++LR+ YPTLN+EVDGG+   T+D  A
Sbjct: 139 LVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAA 187

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 54/232 (23%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPK 64
           +I PSIL +D + L  E+  +  +GAD+LH+DVMDG FVPNLT G PVV+ L     IP 
Sbjct: 9   LIAPSILAADFARLADEAAAV--NGADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIP- 65

Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
              + H+M+ NP +                                           W  
Sbjct: 66  --MDCHLMIDNPDR-------------------------------------------WAP 80

Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
           P A+A     TFH E  DN   V R I+ AG K G+++KP TP++   + +   D +L+M
Sbjct: 81  PYAEAGAYNVTFHAEATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVM 140

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKC 232
           +VEPGFGGQ+F+ +++ KV+ +R+       T+ +E+DGG+  +TI++ A+ 
Sbjct: 141 SVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEA 192

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mycobacterium tuberculosis (taxid: 1773)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=rpe PE=3 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 54/232 (23%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR--NKIPK 64
           +I PSIL +D + L  E+  +  +GAD+LH+DVMDG FVPNLT G PVV+ L     IP 
Sbjct: 9   LIAPSILAADFARLADEAAAV--NGADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIP- 65

Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
              + H+M+ NP +                                           W  
Sbjct: 66  --MDCHLMIDNPDR-------------------------------------------WAP 80

Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
           P A+A     TFH E  DN   V R I+ AG K G+++KP TP++   + +   D +L+M
Sbjct: 81  PYAEAGAYNVTFHAEATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVM 140

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKC 232
           +VEPGFGGQ+F+ +++ KV+ +R+       T+ +E+DGG+  +TI++ A+ 
Sbjct: 141 SVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEA 192

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mycobacterium bovis (taxid: 1765)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
94469030	224	ribulose-5-phosphate-3-epimerase [Aedes	0.682	0.843	0.635	6e-77
170049894	224	ribulose-phosphate 3-epimerase [Culex qu	0.682	0.843	0.635	9e-77
157126418	224	ribulose-5-phosphate-3-epimerase [Aedes	0.682	0.843	0.635	1e-76
193671697	227	PREDICTED: ribulose-phosphate 3-epimeras	0.667	0.814	0.622	5e-76
239793659	204	ACYPI003993 [Acyrthosiphon pisum]	0.667	0.906	0.622	7e-76
118784828	228	AGAP005080-PA [Anopheles gambiae str. PE	0.682	0.828	0.609	4e-75
307181842	228	Ribulose-phosphate 3-epimerase [Camponot	0.675	0.820	0.604	6e-75
195383236	221	GJ20270 [Drosophila virilis] gi|19414512	0.671	0.841	0.628	7e-74
195028967	221	GH20024 [Drosophila grimshawi] gi|193903	0.671	0.841	0.620	2e-73
383850862	225	PREDICTED: ribulose-phosphate 3-epimeras	0.657	0.808	0.608	5e-73

>gi|94469030|gb|ABF18364.1| ribulose-5-phosphate-3-epimerase [Aedes aegypti]

 Score =  293 bits (750), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 148/233 (63%), Positives = 165/233 (70%), Gaps = 44/233 (18%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           MS +   IGPSILN+DLS LH ESQ LLD+GADYLHLDVMDGTFVPNLTFGHPVVKCLRN
Sbjct: 1   MSSLSAKIGPSILNADLSQLHEESQRLLDNGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-DNVPQVIRQIKEAGMKVGQVL 119
           KI  AFFETHMMVQ PQQWIEPMADA V+QYTFH+EPV D+V  + R+++EAGMK     
Sbjct: 61  KIKDAFFETHMMVQAPQQWIEPMADAGVNQYTFHIEPVMDSVVDICRKVQEAGMK----- 115

Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
                                                 VGLAIKP TPV+ + E+I  AD
Sbjct: 116 --------------------------------------VGLAIKPGTPVETVKEFIPLAD 137

Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           ++LIMTVEPGFGGQKFM DMMPKV+WLRENYP L+IEVDGGVGP TID CAK 
Sbjct: 138 MILIMTVEPGFGGQKFMNDMMPKVQWLRENYPNLDIEVDGGVGPGTIDACAKA 190

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049894|ref|XP_001858610.1| ribulose-phosphate 3-epimerase [Culex quinquefasciatus] gi|167871570|gb|EDS34953.1| ribulose-phosphate 3-epimerase [Culex quinquefasciatus]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 148/233 (63%), Positives = 164/233 (70%), Gaps = 44/233 (18%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           MS +   IGPSILN+DLS LH ESQ LLD+GADYLHLDVMDGTFVPNLTFGHPVVKCLRN
Sbjct: 1   MSSLSAKIGPSILNADLSQLHEESQRLLDNGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-DNVPQVIRQIKEAGMKVGQVL 119
           KI  AFFETHMMVQ PQQWIEPMADA V+QYTFH+EPV D+V  + R+++EAGMK     
Sbjct: 61  KIKDAFFETHMMVQAPQQWIEPMADAGVNQYTFHIEPVMDSVVDICRKVQEAGMK----- 115

Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
                                                 VGLAIKP TPV+ + E+I  AD
Sbjct: 116 --------------------------------------VGLAIKPGTPVEAVKEFIAIAD 137

Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           +VLIMTVEPGFGGQKFM DMMPKV+WLRENYP L+IEVDGGVG  TID CAK 
Sbjct: 138 MVLIMTVEPGFGGQKFMADMMPKVQWLRENYPNLDIEVDGGVGLATIDACAKA 190

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126418|ref|XP_001660886.1| ribulose-5-phosphate-3-epimerase [Aedes aegypti] gi|108873289|gb|EAT37514.1| AAEL010505-PA [Aedes aegypti]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/233 (63%), Positives = 164/233 (70%), Gaps = 44/233 (18%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           MS +   IGPSILN+DLS LH ESQ LLD+GADYLHLDVMDGTFVPNLTFGHPVVKCLRN
Sbjct: 1   MSSLSAKIGPSILNADLSQLHEESQRLLDNGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-DNVPQVIRQIKEAGMKVGQVL 119
           KI  AFFETHMMVQ PQQWIEPMADA V+QYTFH+EPV D+V  + R+++EAGMK     
Sbjct: 61  KIKDAFFETHMMVQAPQQWIEPMADAGVNQYTFHIEPVMDSVVDICRKVQEAGMK----- 115

Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
                                                 VGLAIKP TPV+ + E+I  AD
Sbjct: 116 --------------------------------------VGLAIKPGTPVETVKEFIPLAD 137

Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           ++LIMTVEPGFGGQKFM DMMPKV WLRENYP L+IEVDGGVGP TID CAK 
Sbjct: 138 MILIMTVEPGFGGQKFMNDMMPKVHWLRENYPNLDIEVDGGVGPGTIDACAKA 190

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193671697|ref|XP_001950531.1| PREDICTED: ribulose-phosphate 3-epimerase-like [Acyrthosiphon pisum]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 162/228 (71%), Gaps = 43/228 (18%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           + C IGPS+LN+DLS L++ESQ L+DSGADYLHLDVMDGTFVPNLTFGHPVVKCLR K+P
Sbjct: 5   LSCKIGPSVLNADLSQLYNESQKLIDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRTKLP 64

Query: 64  KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWI 123
            A FETHMMVQNP QWI  MADANVDQYTFH+EP D+VP V R+IKEAGMKV        
Sbjct: 65  NAVFETHMMVQNPLQWISAMADANVDQYTFHIEPCDDVPLVCRKIKEAGMKV-------- 116

Query: 124 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183
                                              GLAIKP TPV  + EYI+ AD++L+
Sbjct: 117 -----------------------------------GLAIKPGTPVTCVEEYIDMADMILV 141

Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
           MTVEPGFGGQKFM DMMPK++ LRE YPT++IEVDGG+GPN ID CAK
Sbjct: 142 MTVEPGFGGQKFMTDMMPKIEILREKYPTMDIEVDGGIGPNNIDVCAK 189

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239793659|dbj|BAH72934.1| ACYPI003993 [Acyrthosiphon pisum]

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/228 (62%), Positives = 162/228 (71%), Gaps = 43/228 (18%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           + C IGPS+LN+DLS L++ESQ L+DSGADYLHLDVMDGTFVPNLTFGHPVVKCLR K+P
Sbjct: 5   LSCKIGPSVLNADLSQLYNESQKLIDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRTKLP 64

Query: 64  KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWI 123
            A FETHMMVQNP QWI  MADANVDQYTFH+EP D+VP V R+IKEAGMKV        
Sbjct: 65  NAVFETHMMVQNPLQWISAMADANVDQYTFHIEPCDDVPLVCRKIKEAGMKV-------- 116

Query: 124 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183
                                              GLAIKP TPV  + EYI+ AD++L+
Sbjct: 117 -----------------------------------GLAIKPGTPVTCVEEYIDMADMILV 141

Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
           MTVEPGFGGQKFM DMMPK++ LRE YPT++IEVDGG+GPN ID CAK
Sbjct: 142 MTVEPGFGGQKFMTDMMPKIEILREKYPTMDIEVDGGIGPNNIDVCAK 189

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118784828|ref|XP_313959.3| AGAP005080-PA [Anopheles gambiae str. PEST] gi|116128231|gb|EAA09374.3| AGAP005080-PA [Anopheles gambiae str. PEST]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 142/233 (60%), Positives = 166/233 (71%), Gaps = 44/233 (18%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           M+ +   IGPSILN+DLS LH ES+ LL +GADYLHLDVMDGTFVPNLTFGHPVVKCLRN
Sbjct: 1   MAPLSARIGPSILNADLSQLHEESEKLLANGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-DNVPQVIRQIKEAGMKVGQVL 119
           KI  AFFETHMMVQNPQQWIEPMADA V QYTFH+EPV D+V  V R+++E+GMKV    
Sbjct: 61  KIKDAFFETHMMVQNPQQWIEPMADAGVQQYTFHIEPVLDSVADVCRKVRESGMKV---- 116

Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
                                                  GLA+KP T V+ + +YI+SAD
Sbjct: 117 ---------------------------------------GLALKPGTAVEAVQQYIDSAD 137

Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           +VL+MTVEPGFGGQKFM DMMPKV+WLRE+YP L+IEVDGGVGP TI++C+K 
Sbjct: 138 MVLVMTVEPGFGGQKFMGDMMPKVQWLREHYPALDIEVDGGVGPATIEQCSKA 190

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181842|gb|EFN69282.1| Ribulose-phosphate 3-epimerase [Camponotus floridanus]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 139/230 (60%), Positives = 165/230 (71%), Gaps = 43/230 (18%)

Query: 3   HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI 62
           H+   IGPSILN+DL+ L+ ESQ LLD+GADYLHLDVMDG FVPNL+FGHP+VKCLR+KI
Sbjct: 4   HLSAKIGPSILNADLAQLYKESQKLLDNGADYLHLDVMDGHFVPNLSFGHPIVKCLRSKI 63

Query: 63  PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDW 122
             AFFETHMMV NP+QWIEPMADANVDQYTFHVEP+ +VP + R++KEAGMKV       
Sbjct: 64  KDAFFETHMMVSNPEQWIEPMADANVDQYTFHVEPIKDVPLICRKVKEAGMKV------- 116

Query: 123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVL 182
                                               G+A+KP TPV+VI +Y++ ADL+L
Sbjct: 117 ------------------------------------GVALKPGTPVNVITDYVDLADLIL 140

Query: 183 IMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           IMTVEPGFGGQKFM+ M+ KV WLRENYP L+IEVDGGVGP+TI+ CAK 
Sbjct: 141 IMTVEPGFGGQKFMEPMLQKVAWLRENYPGLDIEVDGGVGPSTIEACAKA 190

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383236|ref|XP_002050332.1| GJ20270 [Drosophila virilis] gi|194145129|gb|EDW61525.1| GJ20270 [Drosophila virilis]

 Score =  283 bits (723), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 144/229 (62%), Positives = 161/229 (70%), Gaps = 43/229 (18%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           +Q  IGPSILN+DL+NL +ESQ LLD+GADYLHLDVMDGTFVPNLTFGHP+VKCLRN I 
Sbjct: 3   IQAKIGPSILNADLANLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKCLRNNIK 62

Query: 64  KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWI 123
           +AFFETHMMVQNP+QWI PMADA V+ YTFHVEPVD+V +V R I+EAGMK         
Sbjct: 63  EAFFETHMMVQNPEQWIAPMADAGVNLYTFHVEPVDDVSKVSRLIQEAGMK--------- 113

Query: 124 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183
                                             VGLAIKP T V  I +YI+ ADLVL+
Sbjct: 114 ----------------------------------VGLAIKPGTKVQEIEKYIDVADLVLV 139

Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           MTVEPGFGGQ FM DMMPKV+WLR NYP L+IEVDGGVGP TID CAK 
Sbjct: 140 MTVEPGFGGQSFMADMMPKVEWLRTNYPNLDIEVDGGVGPKTIDCCAKA 188

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028967|ref|XP_001987346.1| GH20024 [Drosophila grimshawi] gi|193903346|gb|EDW02213.1| GH20024 [Drosophila grimshawi]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 161/229 (70%), Gaps = 43/229 (18%)

Query: 4   VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
           +Q  IGPSILN+DL+NL  ESQ LLD+GADYLHLDVMDGTFVPNLTFGHP+VKCLRNKI 
Sbjct: 3   IQAKIGPSILNADLANLAEESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKCLRNKIK 62

Query: 64  KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWI 123
           +AFFETHMMVQNP+QWI PM+DA V+ YTFH+EPV++V +V R I+EAGMK         
Sbjct: 63  EAFFETHMMVQNPEQWIAPMSDAGVNLYTFHIEPVEDVCKVTRLIQEAGMK--------- 113

Query: 124 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI 183
                                             VGLAIKP T V  I +Y+E ADLVL+
Sbjct: 114 ----------------------------------VGLAIKPGTSVKDIEKYVELADLVLV 139

Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           MTVEPGFGGQ FM DMMPKV+WLR NYP L+IEVDGGVGP TID CAK 
Sbjct: 140 MTVEPGFGGQSFMADMMPKVEWLRNNYPNLDIEVDGGVGPKTIDCCAKA 188

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850862|ref|XP_003700993.1| PREDICTED: ribulose-phosphate 3-epimerase-like [Megachile rotundata]

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 137/225 (60%), Positives = 159/225 (70%), Gaps = 43/225 (19%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           IGPSILN+DL+ L  ESQ L+++GADYLHLDVMDG FVPNLTFGHP+VKCLR+KI   FF
Sbjct: 9   IGPSILNADLAQLAEESQRLVNNGADYLHLDVMDGHFVPNLTFGHPLVKCLRSKIKDTFF 68

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           ETHMMV NP Q                                           WIEPM+
Sbjct: 69  ETHMMVSNPDQ-------------------------------------------WIEPMS 85

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
           DA VDQYTFHVEPV +VP V R+++EAGMKVG+A+KP TPVD +AEY++ AD+VL+MTVE
Sbjct: 86  DAGVDQYTFHVEPVKDVPLVCRKVREAGMKVGVALKPGTPVDTVAEYVDLADMVLVMTVE 145

Query: 188 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           PGFGGQKFM+ MM KV WLR+NYPTL+IEVDGGVGP TID CAK 
Sbjct: 146 PGFGGQKFMEPMMEKVSWLRKNYPTLDIEVDGGVGPATIDACAKA 190

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
FB|FBgn0050499	221	CG30499 [Drosophila melanogast	0.436	0.547	0.743	1.3e-63
ZFIN|ZDB-GENE-030131-6837	228	rpe "ribulose-5-phosphate-3-ep	0.404	0.491	0.589	1.3e-34
WB|WBGene00017272	227	F08F8.7 [Caenorhabditis elegan	0.462	0.563	0.521	7.6e-44
TAIR|locus:2082349	225	AT3G01850 [Arabidopsis thalian	0.584	0.72	0.402	2.4e-28
SGD|S000003657	238	RPE1 "D-ribulose-5-phosphate 3	0.404	0.470	0.508	2.2e-27
DICTYBASE|DDB_G0278275	225	rpe "ribulose phosphate 3-epim	0.393	0.484	0.580	3e-30
TAIR|locus:2038456	227	AT1G63290 [Arabidopsis thalian	0.584	0.713	0.396	8.2e-28
UNIPROTKB|E7EW52	220	RPE "Ribulose-phosphate 3-epim	0.274	0.345	0.631	3.5e-38
MGI|MGI:1913896	228	Rpe "ribulose-5-phosphate-3-ep	0.404	0.491	0.598	2.4e-35
UNIPROTKB|D3ZZU9	228	Rpe "Ribulose-phosphate 3-epim	0.404	0.491	0.598	2.4e-35

FB|FBgn0050499 CG30499 [Drosophila melanogaster (taxid:7227)]

 Score = 475 (172.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 90/121 (74%), Positives = 104/121 (85%)

Query:     4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP 63
             VQ  IGPSILN+DLSNL +ESQ LLD+GADYLHLDVMDGTFVPNLTFGHP+VK LRNKI 
Sbjct:     3 VQAKIGPSILNADLSNLAAESQKLLDNGADYLHLDVMDGTFVPNLTFGHPMVKSLRNKIK 62

Query:    64 KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWI 123
              AFFETHMMVQNP+QWIEPMADA V+ YTFHVEPV +V +V R+++E+GMKVG  ++   
Sbjct:    63 TAFFETHMMVQNPEQWIEPMADAGVNLYTFHVEPVQDVVRVSRRVQESGMKVGLAIKPGT 122

Query:   124 E 124
             E
Sbjct:   123 E 123

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

ZFIN|ZDB-GENE-030131-6837 rpe "ribulose-5-phosphate-3-epimerase" [Danio rerio (taxid:7955)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 66/112 (58%), Positives = 88/112 (78%)

Query:   120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
             + W++PMA A  +QYTFH+E   N   +I++I+E+GMKVGLAIKP T V+ +A +    D
Sbjct:    77 EQWVKPMAAAGANQYTFHLEATSNPGNLIKEIRESGMKVGLAIKPGTTVEELAPWAGQID 136

Query:   180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             + L+MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP++I  CA+
Sbjct:   137 MALVMTVEPGFGGQKFMEDMMPKVSWLRGQFPSLDIEVDGGVGPDSIHRCAE 188

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00017272 F08F8.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 344 (126.2 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 72/138 (52%), Positives = 96/138 (69%)

Query:    10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFE 68
             PSILN+DL++L SE + LL +GAD+LHLDVMDG FVPNLTFGHPVV+ LR  +  + FF+
Sbjct:     9 PSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLGAEPFFD 68

Query:    69 THMMVQNPQQWIEPMADANVDQYTFHVEPVDN---VPQVIRQIKEAGMKVGQVLQDWIEP 125
              H+MV NP QW+EPMA A   Q+TFH E VD    V ++I +I+++GMKVG  L   ++P
Sbjct:    69 VHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVG--LS--VKP 124

Query:   126 MADANVDQYTFHVEPVDN 143
                 +V+    H   +DN
Sbjct:   125 --GTSVEHILKHANHLDN 140

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

TAIR|locus:2082349 AT3G01850 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 68/169 (40%), Positives = 102/169 (60%)

Query:    68 ETHMMVQNPQQWIE-PMADAN-VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
             E + M+     W+   + D + V   T     ++++ +      +  + V   + D++  
Sbjct:    21 EANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYLDCHLMVTNPM-DYVAQ 79

Query:   126 MADANVDQYTFHVEPV-DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA---DLV 181
             MA A    +TFHVE   DN  Q++ +IK  GM+ G+A+KP TPV+ +   +E     ++V
Sbjct:    80 MAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTPVEQVYPLVEGTTPVEMV 139

Query:   182 LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
             L+MTVEPGFGGQKFM DMM KV+ LR+ YPTL+I+VDGG+GP+TID  A
Sbjct:   140 LVMTVEPGFGGQKFMPDMMDKVRALRQKYPTLDIQVDGGLGPSTIDTAA 188

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

SGD|S000003657 RPE1 "D-ribulose-5-phosphate 3-epimerase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 57/112 (50%), Positives = 75/112 (66%)

Query:   120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
             + W++  A    DQ+TFH E   +   +++ IK  G+K   AIKP T VDV+ E     D
Sbjct:    87 EKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAIKPGTSVDVLFELAPHLD 146

Query:   180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             + L+MTVEPGFGGQKFM+DMMPKV+ LR  +P LNI+VDGG+G  TI + AK
Sbjct:   147 MALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAK 198

GO:0006098 "pentose-phosphate shunt" evidence=IEA;IMP

GO:0005829 "cytosol" evidence=TAS

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS;IMP;IDA

DICTYBASE|DDB_G0278275 rpe "ribulose phosphate 3-epimerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 65/112 (58%), Positives = 81/112 (72%)

Query:   123 IEPMADANVDQYTFHVEPVD--NVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
             IE   +A  +  TFH+E  +   + Q VI QIKEAGMKV L +KPKTP++ +  Y++  D
Sbjct:    78 IEDFKNAGANSITFHIEATEPRGITQKVITQIKEAGMKVALCVKPKTPIEEVFPYVDQLD 137

Query:   180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
              VLIMTVEPGFGGQ FM+DMMPKVK LR  YP LNI+VDGG+ P+TID  A+
Sbjct:   138 FVLIMTVEPGFGGQSFMKDMMPKVKTLRSKYPNLNIQVDGGLDPSTIDMAAE 189

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IC

GO:0046872 "metal ion binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

TAIR|locus:2038456 AT1G63290 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 67/169 (39%), Positives = 102/169 (60%)

Query:    68 ETHMMVQNPQQWIE-PMADAN-VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
             E   M+     W+   + D + V   T     ++++ +      +  + V   + D+++ 
Sbjct:    23 EAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLRKHTNAYLDCHLMVTNPM-DYVDQ 81

Query:   126 MADANVDQYTFHVEPV-DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA---DLV 181
             MA A    +TFHVE   +N  +++++IK AGM+ G+A+KP TPV+ +   +E     ++V
Sbjct:    82 MAKAGASGFTFHVEVAQENWQELVKKIKAAGMRPGVALKPGTPVEQVYPLVEGTNPVEMV 141

Query:   182 LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
             L+MTVEPGFGGQKFM  MM KV+ LR  YPTL+IEVDGG+GP+TID  A
Sbjct:   142 LVMTVEPGFGGQKFMPSMMDKVRALRNKYPTLDIEVDGGLGPSTIDAAA 190

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E7EW52 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 48/76 (63%), Positives = 63/76 (82%)

Query:   156 MKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNI 215
             ++VGLAIKP T V+ +A +    D+ L+MTVEPGFGGQKFM+DMMPKV WLR  +P+L+I
Sbjct:   105 LQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI 164

Query:   216 EVDGGVGPNTIDECAK 231
             EVDGGVGP+T+ +CA+
Sbjct:   165 EVDGGVGPDTVHKCAE 180

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

MGI|MGI:1913896 Rpe "ribulose-5-phosphate-3-epimerase" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 67/112 (59%), Positives = 88/112 (78%)

Query:   120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
             + W++PMA A  +QYTFH+E  +N   +I+ I+E GMKVGLAIKP T V+ +A +    D
Sbjct:    77 EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQID 136

Query:   180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             + L+MTVEPGFGGQKFM+DMMPKV WLR  +PTL+IEVDGGVGP+T+ +CA+
Sbjct:   137 MALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAE 188

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=ISO

GO:0006098 "pentose-phosphate shunt" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046872 "metal ion binding" evidence=ISO

GO:0048029 "monosaccharide binding" evidence=ISO

UNIPROTKB|D3ZZU9 Rpe "Ribulose-phosphate 3-epimerase" [Rattus norvegicus (taxid:10116)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 67/112 (59%), Positives = 88/112 (78%)

Query:   120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
             + W++PMA A  +QYTFH+E  +N   +I+ I+E GMKVGLAIKP T V+ +A +    D
Sbjct:    77 EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQID 136

Query:   180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             + L+MTVEPGFGGQKFM+DMMPKV WLR  +PTL+IEVDGGVGP+T+ +CA+
Sbjct:   137 MALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAE 188

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE42	RPE1_ORYSJ	5, ., 1, ., 3, ., 1	0.4192	0.6534	0.7938	yes	N/A
O66107	RPE_TREPA	5, ., 1, ., 3, ., 1	0.3466	0.6245	0.7935	yes	N/A
P44756	RPE_HAEIN	5, ., 1, ., 3, ., 1	0.3086	0.6606	0.8169	yes	N/A
P0AG08	RPE_ECOL6	5, ., 1, ., 3, ., 1	0.3146	0.6678	0.8222	yes	N/A
P57603	RPE_BUCAI	5, ., 1, ., 3, ., 1	0.3116	0.6570	0.7982	yes	N/A
Q58093	RPE_METJA	5, ., 1, ., 3, ., 1	0.3019	0.7256	0.8589	yes	N/A
P56188	RPE_HELPY	5, ., 1, ., 3, ., 1	0.3144	0.6462	0.8248	yes	N/A
Q8K940	RPE_BUCAP	5, ., 1, ., 3, ., 1	0.3260	0.6606	0.8026	yes	N/A
Q8VEE0	RPE_MOUSE	5, ., 1, ., 3, ., 1	0.5131	0.6642	0.8070	yes	N/A
Q9ZJ75	RPE_HELPJ	5, ., 1, ., 3, ., 1	0.3144	0.6462	0.8248	yes	N/A
P46969	RPE_YEAST	5, ., 1, ., 3, ., 1	0.4083	0.6678	0.7773	yes	N/A
O34557	RPE_BACSU	5, ., 1, ., 3, ., 1	0.3288	0.6209	0.7926	yes	N/A
Q9L0Z5	RPE_STRCO	5, ., 1, ., 3, ., 1	0.3392	0.6389	0.7763	yes	N/A
Q89A59	RPE_BUCBP	5, ., 1, ., 3, ., 1	0.3114	0.6895	0.8377	yes	N/A
O14105	RPE_SCHPO	5, ., 1, ., 3, ., 1	0.4192	0.6642	0.8070	yes	N/A
Q6FL81	RPE_CANGA	5, ., 1, ., 3, ., 1	0.4057	0.6714	0.7560	yes	N/A
P0AG10	RPE_SHIFL	5, ., 1, ., 3, ., 1	0.3146	0.6678	0.8222	yes	N/A
Q96AT9	RPE_HUMAN	5, ., 1, ., 3, ., 1	0.5087	0.6642	0.8070	yes	N/A
Q8SRP6	RPE_ENCCU	5, ., 1, ., 3, ., 1	0.3212	0.6028	0.7695	yes	N/A
P65760	RPE_MYCTU	5, ., 1, ., 3, ., 1	0.3405	0.6425	0.7772	yes	N/A
Q5R5Y2	RPE_PONAB	5, ., 1, ., 3, ., 1	0.5043	0.6642	0.8070	yes	N/A
P65761	RPE_MYCBO	5, ., 1, ., 3, ., 1	0.3405	0.6425	0.7772	yes	N/A
Q755M2	RPE_ASHGO	5, ., 1, ., 3, ., 1	0.4058	0.6714	0.7782	yes	N/A
P51012	RPE_RHOCA	5, ., 1, ., 3, ., 1	0.3529	0.6209	0.7543	yes	N/A
Q9CCP9	RPE_MYCLE	5, ., 1, ., 3, ., 1	0.3362	0.6425	0.7946	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.1	0.914
3rd Layer	5.1.3	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	277
PTZ00170	228	PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epime	2e-92
cd00429	211	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RP	3e-90
PLN02334	229	PLN02334, PLN02334, ribulose-phosphate 3-epimerase	3e-79
COG0036	220	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Car	2e-72
PRK05581	220	PRK05581, PRK05581, ribulose-phosphate 3-epimerase	2e-72
pfam00834	201	pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 ep	9e-61
TIGR01163	210	TIGR01163, rpe, ribulose-phosphate 3-epimerase	1e-58
PRK09722	229	PRK09722, PRK09722, allulose-6-phosphate 3-epimera	7e-42
PRK08745	223	PRK08745, PRK08745, ribulose-phosphate 3-epimerase	1e-37
PRK08883	220	PRK08883, PRK08883, ribulose-phosphate 3-epimerase	1e-35
PRK08005	210	PRK08005, PRK08005, epimerase; Validated	2e-21
PRK08091	228	PRK08091, PRK08091, ribulose-phosphate 3-epimerase	2e-09
PRK14057	254	PRK14057, PRK14057, epimerase; Provisional	4e-06
cd06589	265	cd06589, GH31, The enzymes of glycosyl hydrolase f	2e-04
cd03174	265	cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas	0.003

>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional

 Score =  272 bits (698), Expect = 2e-92
 Identities = 106/234 (45%), Positives = 141/234 (60%), Gaps = 44/234 (18%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
              ++ +I PSIL +D S L  E+Q++L  GAD+LH+DVMDG FVPNL+FG PVVK LR 
Sbjct: 2   KQPLKAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRK 61

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
            +P  F + H+MV NP++W++  A A   Q+TFH+E  ++ P+                 
Sbjct: 62  HLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPK----------------- 104

Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-- 178
                                     V R+I+EAGMKVG+AIKPKTPV+V+   I++   
Sbjct: 105 -------------------------AVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLV 139

Query: 179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           D+VL+MTVEPGFGGQ FM DMMPKV+ LR+ YP LNI+VDGG+   TID  A  
Sbjct: 140 DMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADA 193

Length = 228

>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)

 Score =  266 bits (682), Expect = 3e-90
 Identities = 92/230 (40%), Positives = 126/230 (54%), Gaps = 48/230 (20%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
            I PSIL++D +NL  E + L ++GAD++H+DVMDG FVPNLTFG PVVK LR       
Sbjct: 1   KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLP 59

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV+NP+                                            +IE  
Sbjct: 60  LDVHLMVENPE-------------------------------------------RYIEAF 76

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
           A A  D  TFH E  D++ + I+ IKE GMK G+A+ P TPV+V+  Y++  DLVL+M+V
Sbjct: 77  AKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSV 136

Query: 187 EPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKC 232
            PGFGGQKF+ +++ K++ LRE  P     L IEVDGG+   TI   A+ 
Sbjct: 137 NPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEA 186

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. Length = 211

>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase

 Score =  238 bits (610), Expect = 3e-79
 Identities = 96/225 (42%), Positives = 131/225 (58%), Gaps = 44/225 (19%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PSIL++D +NL  E++ +LD+GAD+LH+DVMDG FVPNLT G PVVK LR K   A  
Sbjct: 10  IAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALR-KHTDAPL 68

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV NP+ ++   A A    +TFH+E                               
Sbjct: 69  DCHLMVTNPEDYVPDFAKAGASIFTFHIEQA----------------------------- 99

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMT 185
                          ++ ++I+QIK AGMK G+ + P TPV+ +   +E    D+VL+M+
Sbjct: 100 ------------STIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMS 147

Query: 186 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
           VEPGFGGQ F+  MM KV+ LR+ YP L+IEVDGGVGP+TID+ A
Sbjct: 148 VEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAA 192

Length = 229

>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

 Score =  221 bits (565), Expect = 2e-72
 Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 49/230 (21%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
            I PSIL++D + L  E + L  +GAD +H+DVMDG FVPN+TFG PVVK LR KI    
Sbjct: 5   KIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALR-KITDLP 63

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV+NP ++IE  A A                                  D I   
Sbjct: 64  LDVHLMVENPDRYIEAFAKAGA--------------------------------DII--- 88

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
                   TFH E  +++ + I+ IKE G+K GL + P TP++ +   ++  DLVL+M+V
Sbjct: 89  --------TFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV 140

Query: 187 EPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKC 232
            PGFGGQKF+ +++ K+      + E    L IEVDGG+   TI + A  
Sbjct: 141 NPGFGGQKFIPEVLEKIRELRAMIDERLDIL-IEVDGGINLETIKQLAAA 189

Length = 220

>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated

 Score =  221 bits (565), Expect = 2e-72
 Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 48/230 (20%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
           +I PSIL++D + L  E + +  +GAD++H+DVMDG FVPNLT G PVV+ +R K+ K  
Sbjct: 5   LIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIR-KVTKLP 63

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV+NP +++   A A  D  TFHVE  ++       I                  
Sbjct: 64  LDVHLMVENPDRYVPDFAKAGADIITFHVEASEH-------IHR---------------- 100

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
                               +++ IK AG+K GL + P TP++ + + ++  DLVL+M+V
Sbjct: 101 --------------------LLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSV 140

Query: 187 EPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
            PGFGGQKF+ +++ K++ LR    E    + IEVDGG+  + I ECA+ 
Sbjct: 141 NPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEA 190

Length = 220

>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family

 Score =  190 bits (486), Expect = 9e-61
 Identities = 81/228 (35%), Positives = 119/228 (52%), Gaps = 48/228 (21%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PS+L++D ++L  E + + ++GAD+LH+DVMDG FVPNLT G  VV+ LR  + +   
Sbjct: 2   IAPSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRP-LTELPL 60

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV+ P + I   A+A  D                                 I    
Sbjct: 61  DVHLMVEEPDRIIPDFAEAGAD--------------------------------II---- 84

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
                  +FH E  D+  + I+ IKEAG K GL + P TP+D I   ++  DLVL+M+V 
Sbjct: 85  -------SFHAEASDHPHRTIQLIKEAGAKAGLVLNPATPLDAIEYLLDDLDLVLLMSVN 137

Query: 188 PGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAK 231
           PGFGGQ F+  ++PK++ +R    E      IEVDGGV  + I + A+
Sbjct: 138 PGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLDNIPQIAE 185

This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. Length = 201

>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase

 Score =  185 bits (472), Expect = 1e-58
 Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 50/229 (21%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PSIL++D + L  E + + ++GAD++H+DVMDG FVPNLTFG PV++ LR K      
Sbjct: 1   IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALR-KYTDLPI 59

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV+NP ++IE  A                         EAG        D I    
Sbjct: 60  DVHLMVENPDRYIEDFA-------------------------EAG-------ADII---- 83

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
                  T H E  +++ ++++ IK+ G K G+ + P TP++ +   +   DLVL+M+V 
Sbjct: 84  -------TVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVN 136

Query: 188 PGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAK 231
           PGFGGQKF+ D + K++ +R+         L IEVDGGV  +   E A+
Sbjct: 137 PGFGGQKFIPDTLEKIREVRKMIDENGLSIL-IEVDGGVNDDNARELAE 184

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants [Energy metabolism, Pentose phosphate pathway]. Length = 210

>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional

 Score =  143 bits (362), Expect = 7e-42
 Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 50/224 (22%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
            I PS++  DL     E    L+S ADY H+D+MDG FVPNLT     V  ++ K+    
Sbjct: 4   KISPSLMCMDLLKF-KEQIEFLNSKADYFHIDIMDGHFVPNLTLSPFFVSQVK-KLASKP 61

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV +PQ +I+ +ADA  D  T H E ++   Q  R                    
Sbjct: 62  LDVHLMVTDPQDYIDQLADAGADFITLHPETING--QAFR-------------------- 99

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
                               +I +I+ AGMKVGL + P+TPV+ I  YI   D + +MTV
Sbjct: 100 --------------------LIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTV 139

Query: 187 EPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNT 225
           +PGF GQ F+ +M+ K+  L+          L IEVDG     T
Sbjct: 140 DPGFAGQPFIPEMLDKIAELKALRERNGLEYL-IEVDGSCNQKT 182

Length = 229

>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional

 Score =  132 bits (332), Expect = 1e-37
 Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 47/229 (20%)

Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA 65
             I PSIL++D + L  E  N+L +GAD++H DVMD  +VPNLT G  V + LR     A
Sbjct: 4   TAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITA 63

Query: 66  FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
             + H+MV                      EPVD +                     +  
Sbjct: 64  PIDVHLMV----------------------EPVDRI---------------------VPD 80

Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT 185
            ADA     +FH E   +V + I+ IK  G + GL + P TPVD++   +   DLVL+M+
Sbjct: 81  FADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMS 140

Query: 186 VEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPNTIDECA 230
           V PGFGGQ F+   + K++ +R+    L     +E+DGGV  + I   A
Sbjct: 141 VNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIA 189

Length = 223

>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional

 Score =  126 bits (318), Expect = 1e-35
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 47/229 (20%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
           +I PSIL++D + L  + + +L +GAD +H DVMD  +VPNLTFG P+ K LR+    A 
Sbjct: 1   LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAP 60

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV+                      PVD +                     I   
Sbjct: 61  IDVHLMVK----------------------PVDRI---------------------IPDF 77

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
           A A     TFHVE  ++V + ++ IKE G + G+ + P TP+  +   ++  DL+L+M+V
Sbjct: 78  AKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137

Query: 187 EPGFGGQKFMQDMMPKVKWLRENYPT----LNIEVDGGVGPNTIDECAK 231
            PGFGGQ F+   + K++ +R+        + +E+DGGV  + I E A+
Sbjct: 138 NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAE 186

Length = 220

>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated

 Score = 88.9 bits (220), Expect = 2e-21
 Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 44/212 (20%)

Query: 10  PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET 69
           PS+ ++D          L D+    LHLD+ D +F+ N+TFG   ++ +  +        
Sbjct: 5   PSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPL-SF 63

Query: 70  HMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADA 129
           H+MV +PQ+W+  +A                       I+            WI      
Sbjct: 64  HLMVSSPQRWLPWLA----------------------AIRPG----------WI------ 85

Query: 130 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPG 189
                  H E V N  +++  I+  G K GLA+ P TP+          D ++IMT EP 
Sbjct: 86  -----FIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPD 140

Query: 190 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV 221
             GQ+F+  M  KV   RE++P      DGG+
Sbjct: 141 GRGQQFIAAMCEKVSQSREHFPAAECWADGGI 172

Length = 210

>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 46/185 (24%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I   IL S+    +     L ++    LH D+ DG F P  T G   +K    + P   F
Sbjct: 15  ISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIK----QFPTHCF 70

Query: 68  -ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV++  +  +    A  D  T  VE   ++   I  + +                
Sbjct: 71  KDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAK---------------- 114

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
                 Q T                    + +GL + P+TP+ ++  Y++  DL+ I+T+
Sbjct: 115 ------QKT-------------------TVLIGLCLCPETPISLLEPYLDQIDLIQILTL 149

Query: 187 EPGFG 191
           +P  G
Sbjct: 150 DPRTG 154

Length = 228

>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 39/196 (19%)

Query: 12  ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF-ETH 70
           IL      LH   Q L       LHLD+MDG F P  T G   V     ++P+ F  + H
Sbjct: 26  ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAV----GQLPQTFIKDVH 81

Query: 71  MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
           +MV               DQ+T     V      I    E  + +   L  W+       
Sbjct: 82  LMV--------------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLS-WL------- 119

Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
             Q T  V  +     VIR         G+++ P TP+DVI   +   +++ ++ V PG+
Sbjct: 120 -GQQTVPV--IGGEMPVIR---------GISLCPATPLDVIIPILSDVEVIQLLAVNPGY 167

Query: 191 GGQKFMQDMMPKVKWL 206
           G +    D+  +V  L
Sbjct: 168 GSKMRSSDLHERVAQL 183

Length = 254

>gnl|CDD|133121 cd06589, GH31, The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 92  TFHVEPVDNVPQVIRQIKEAGMKV-GQVLQDWIEPMADAN-VDQYTFHVEPVDNVPQVIR 149
            +     D V +VI  ++E  + + G VL D      D      + +      N   +I 
Sbjct: 17  RYGYGDQDKVLEVIDGMRENDIPLDGFVLDDD---YTDGYGDFTFDWDAGKFPNPKSMID 73

Query: 150 QIKEAGMKVGLAIKP 164
           ++ + G+K+ L I P
Sbjct: 74  ELHDNGVKLVLWIDP 88

All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes. The lysosomal acid alpha-glucosidase (GAA) is essential for glycogen degradation and a deficiency or malfunction of this enzyme causes glycogen storage disease II, also known as pompe disease. In the endoplasmic reticulum, alpha-glucosidase II catalyzes the second step in the N-linked oligosaccharide processing pathway that constitutes part of the quality control system for glycoprotein folding and maturation. The intestinal enzymes sucrase-isomaltase (SI) and maltase-glucoamylase (MGAM) play key roles in the final stage of carbohydrate digestion, making alpha-glucosidase inhibitors useful in the treatment of type 2 diabetes. GH31 alpha-glycosidases are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively. Length = 265

>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 69/204 (33%)

Query: 63  PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE---PV--DNVPQ------VIRQIKEA 111
             A F T   ++      E + +A VD     +E         VPQ      V+R I++ 
Sbjct: 12  EGATFSTEDKLE----IAEALDEAGVD----SIEVGSGASPKAVPQMEDDWEVLRAIRKL 63

Query: 112 GMKVG-QVL----QDWIEPMADANVDQYTFHV------------------EPVDNVPQVI 148
              V  Q L    +  IE   +A VD     +                  E ++N  + I
Sbjct: 64  VPNVKLQALVRNREKGIERALEAGVD--EVRIFDSASETHSRKNLNKSREEDLENAEEAI 121

Query: 149 RQIKEAGMKVGLAI----KPKTPVDVIAEYIES-----ADLVLIM-TVEPGFGGQKFMQD 198
              KEAG++V  ++      KT  + + E  ++     AD + +  TV    G       
Sbjct: 122 EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV----GL------ 171

Query: 199 MMPK-----VKWLRENYPTLNIEV 217
             P+     VK LRE  P + + +
Sbjct: 172 ATPEEVAELVKALREALPDVPLGL 195

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	100.0
KOG3111|consensus	224		100.0
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	100.0
PRK08005	210	epimerase; Validated	100.0
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	100.0
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	100.0
PRK14057	254	epimerase; Provisional	100.0
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	100.0
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	100.0
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	100.0
PLN02334	229	ribulose-phosphate 3-epimerase	100.0
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	100.0
KOG3111|consensus	224		100.0
PRK08005	210	epimerase; Validated	100.0
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	99.97
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	99.97
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	99.97
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	99.97
PRK14057	254	epimerase; Provisional	99.97
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	99.97
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	99.97
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	99.97
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	99.95
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	99.92
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.88
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.85
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.84
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.84
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.83
PLN02334	229	ribulose-phosphate 3-epimerase	99.8
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.8
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.74
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.66
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	99.58
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	99.56
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.54
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	99.52
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	99.5
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	99.5
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.49
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	99.44
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.44
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	99.36
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.34
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.26
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.23
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.22
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	99.21
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.17
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.04
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	98.9
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	98.75
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	98.38
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	98.34
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.24
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	98.24
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	97.99
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.75
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	97.72
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	97.68
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.62
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	97.49
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.46
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	97.43
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.34
PLN02591	250	tryptophan synthase	97.3
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	97.24
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.17
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	97.14
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.11
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.98
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	96.96
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	96.89
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	96.85
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	96.82
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	96.81
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.81
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	96.79
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.75
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	96.68
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	96.66
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	96.62
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.62
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	96.6
PRK07094	323	biotin synthase; Provisional	96.52
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.51
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	96.51
PRK14024	241	phosphoribosyl isomerase A; Provisional	96.49
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	96.48
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	96.45
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	96.45
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	96.4
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	96.39
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	96.39
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	96.38
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	96.37
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.36
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	96.36
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	96.34
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.29
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	96.28
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	96.27
PRK07695	201	transcriptional regulator TenI; Provisional	96.24
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	96.24
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	96.15
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.15
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	96.14
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	96.11
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	96.1
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	96.05
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	96.05
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.99
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	95.86
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	95.86
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	95.85
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	95.75
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	95.73
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	95.73
PRK06256	336	biotin synthase; Validated	95.68
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	95.67
TIGR01334	277	modD putative molybdenum utilization protein ModD.	95.65
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	95.64
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	95.6
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	95.57
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.42
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	95.41
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	95.39
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	95.36
PRK09121	339	5-methyltetrahydropteroyltriglutamate--homocystein	95.32
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	95.29
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	95.22
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	95.22
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	95.14
PRK06806	281	fructose-bisphosphate aldolase; Provisional	95.09
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	95.08
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	95.02
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.96
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	94.93
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.87
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	94.8
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	94.75
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	94.7
PRK08508	279	biotin synthase; Provisional	94.62
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	94.59
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	94.58
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	94.57
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	94.57
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	94.51
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	94.46
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	94.44
PRK06801	286	hypothetical protein; Provisional	94.4
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	94.4
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	94.34
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	94.32
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	94.3
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	94.19
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	94.17
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	94.14
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	94.07
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	94.0
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	93.98
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	93.95
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.94
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	93.89
PRK12331	448	oxaloacetate decarboxylase; Provisional	93.82
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	93.72
PRK08445	348	hypothetical protein; Provisional	93.67
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	93.67
cd03312	360	CIMS_N_terminal_like CIMS - Cobalamine-independent	93.66
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.65
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	93.63
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	93.63
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	93.59
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	93.56
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	93.45
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	93.38
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	93.31
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	93.27
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.27
PRK06096	284	molybdenum transport protein ModD; Provisional	93.17
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	93.08
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	93.05
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	93.02
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	92.98
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	92.94
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	92.91
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	92.9
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	92.88
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	92.76
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	92.71
cd03311	332	CIMS_C_terminal_like CIMS - Cobalamine-independent	92.68
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	92.66
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	92.59
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	92.58
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	92.56
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	92.55
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.54
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	92.51
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	92.5
PRK05222	758	5-methyltetrahydropteroyltriglutamate--homocystein	92.41
TIGR01371	750	met_syn_B12ind 5-methyltetrahydropteroyltriglutama	92.41
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	92.35
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	92.3
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	92.2
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	92.11
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	92.06
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	91.98
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	91.97
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	91.93
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	91.92
PRK14041	467	oxaloacetate decarboxylase; Provisional	91.84
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	91.72
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	91.69
PLN02475	766	5-methyltetrahydropteroyltriglutamate--homocystein	91.64
PRK11572	248	copper homeostasis protein CutC; Provisional	91.64
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	91.64
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	91.48
PLN02617	538	imidazole glycerol phosphate synthase hisHF	91.48
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	91.46
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	91.44
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	91.43
PRK15108	345	biotin synthase; Provisional	91.36
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	91.33
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	91.26
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	91.23
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	91.22
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	91.18
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	91.17
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	91.14
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	91.04
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	91.0
TIGR01334	277	modD putative molybdenum utilization protein ModD.	91.0
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	90.97
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	90.93
PLN02475	766	5-methyltetrahydropteroyltriglutamate--homocystein	90.86
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	90.77
PLN02746	347	hydroxymethylglutaryl-CoA lyase	90.76
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	90.65
PRK04326	330	methionine synthase; Provisional	90.56
TIGR01371	750	met_syn_B12ind 5-methyltetrahydropteroyltriglutama	90.54
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	90.45
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	90.42
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	90.36
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	90.32
PRK14024	241	phosphoribosyl isomerase A; Provisional	90.29
COG3142	241	CutC Uncharacterized protein involved in copper re	90.26
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	90.23
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	90.13
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	90.05
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	89.97
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	89.87
PRK06520	368	5-methyltetrahydropteroyltriglutamate--homocystein	89.68
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	89.65
COG1856	275	Uncharacterized homolog of biotin synthetase [Func	89.61
PRK05222	758	5-methyltetrahydropteroyltriglutamate--homocystein	89.61
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	89.61
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	89.59
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	89.48
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	89.38
PRK08185	283	hypothetical protein; Provisional	89.38
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	89.36
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	89.36
PRK10128	267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	89.29
PRK00957	305	methionine synthase; Provisional	89.26
PRK06096	284	molybdenum transport protein ModD; Provisional	89.25
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	89.25
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	89.18
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	89.09
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	89.08
PRK07709	285	fructose-bisphosphate aldolase; Provisional	89.04
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	89.0
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	88.98
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	88.96
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	88.95
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	88.95
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	88.92
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	88.92
PLN02428	349	lipoic acid synthase	88.85
PRK12330	499	oxaloacetate decarboxylase; Provisional	88.85
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	88.84
PRK08999	312	hypothetical protein; Provisional	88.76
PRK07094	323	biotin synthase; Provisional	88.66
PLN02389	379	biotin synthase	88.65
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	88.61
cd08562	229	GDPD_EcUgpQ_like Glycerophosphodiester phosphodies	88.53
PRK06233	372	hypothetical protein; Provisional	88.49
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	88.42
PRK09282	592	pyruvate carboxylase subunit B; Validated	88.35
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	88.2
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	88.07
TIGR00676	272	fadh2 5,10-methylenetetrahydrofolate reductase, pr	88.03
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	88.01
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	87.89
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	87.85
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	87.76
PRK07315	293	fructose-bisphosphate aldolase; Provisional	87.75
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	87.71
PLN02274	505	inosine-5'-monophosphate dehydrogenase	87.58
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	87.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	87.38
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	87.19
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	87.16
PRK12928	290	lipoyl synthase; Provisional	86.98
KOG2263|consensus	765		86.78
PRK07695	201	transcriptional regulator TenI; Provisional	86.68
COG2108	353	Uncharacterized conserved protein related to pyruv	86.66
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	86.6
KOG2550|consensus	503		86.56
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	86.26
PRK11572	248	copper homeostasis protein CutC; Provisional	86.24
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	85.98
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	85.97
PRK01207	343	methionine synthase; Provisional	85.79
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	85.77
PLN02363	256	phosphoribosylanthranilate isomerase	85.64
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	85.48
TIGR00284	499	dihydropteroate synthase-related protein. This pro	85.46
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	85.39
cd04824	320	eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas	85.36
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	85.36
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	85.32
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	85.29
PRK11613	282	folP dihydropteroate synthase; Provisional	85.16
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	85.07
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	85.06
cd00423	258	Pterin_binding Pterin binding enzymes. This family	85.03
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	84.9
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	84.87
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	84.72
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	84.53
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	84.5
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	84.42
cd00537	274	MTHFR Methylenetetrahydrofolate reductase (MTHFR).	84.36
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	84.33
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	84.29
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	84.24
PRK07315	293	fructose-bisphosphate aldolase; Provisional	84.21
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	84.1
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	84.08
PLN02591	250	tryptophan synthase	83.99
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	83.96
cd00423	258	Pterin_binding Pterin binding enzymes. This family	83.94
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	83.91
PRK14340	445	(dimethylallyl)adenosine tRNA methylthiotransferas	83.86
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	83.82
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	83.56
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	83.55
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	83.53
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	83.53
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	83.41
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	83.37
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	83.36
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	83.33
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	83.23
TIGR00190	423	thiC thiamine biosynthesis protein ThiC. The thiC	83.22
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	83.18
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	83.16
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	83.14
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	83.02
KOG2794|consensus	340		82.96
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	82.86
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	82.62
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	82.53
PRK05927	350	hypothetical protein; Provisional	82.49
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	82.34
PF01136	233	Peptidase_U32: Peptidase family U32 This is family	82.32
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	82.28
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	82.22
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	82.21
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	82.07
PRK12330	499	oxaloacetate decarboxylase; Provisional	82.06
PRK07360	371	FO synthase subunit 2; Reviewed	81.98
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	81.71
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	81.67
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	81.64
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	81.4
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	81.02
PRK08575	326	5-methyltetrahydropteroyltriglutamate--homocystein	80.89
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	80.86
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	80.82
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	80.82
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	80.71
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	80.69
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	80.59
PRK09454	249	ugpQ cytoplasmic glycerophosphodiester phosphodies	80.41
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	80.4
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	80.34
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	80.28
TIGR01211	522	ELP3 histone acetyltransferase, ELP3 family. The S	80.19
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	80.17

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-60  Score=414.07  Aligned_cols=207  Identities=43%  Similarity=0.740  Sum_probs=196.1

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      +.+|+|||||+|+.++++|+++++++|+||+|+|||||+||||+||||+.++++|+ .|++|+||||||.+|++|++.|.
T Consensus         3 ~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~-~t~~p~DvHLMV~~p~~~i~~fa   81 (220)
T COG0036           3 MMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRK-ITDLPLDVHLMVENPDRYIEAFA   81 (220)
T ss_pred             CceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhh-cCCCceEEEEecCCHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999998 59999999999999999999999


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                      ++|||+||||+|+..                                           ++.++++.||+.|+++|+++||
T Consensus        82 ~agad~It~H~E~~~-------------------------------------------~~~r~i~~Ik~~G~kaGv~lnP  118 (220)
T COG0036          82 KAGADIITFHAEATE-------------------------------------------HIHRTIQLIKELGVKAGLVLNP  118 (220)
T ss_pred             HhCCCEEEEEeccCc-------------------------------------------CHHHHHHHHHHcCCeEEEEECC
Confidence            999999999999655                                           7889999999999999999999


Q ss_pred             CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC---CccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~---~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      +||++.++++++.+|++++|||||||+||+|++++++||++++++.+   ++.|+|||||+.+|+++|.++|+++   |+
T Consensus       119 ~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS  198 (220)
T COG0036         119 ATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGS  198 (220)
T ss_pred             CCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999887   6889999999999999999999997   88


Q ss_pred             ccccc-CHHHHHHHHHhh
Q psy11600        239 QKFMQ-DMMPKVKWLREN  255 (277)
Q Consensus       239 q~F~~-~~~~kI~~l~~~  255 (277)
                      ..|.. +..+++++++..
T Consensus       199 alF~~~d~~~~i~~~~~~  216 (220)
T COG0036         199 ALFGADDYKATIRELRGE  216 (220)
T ss_pred             EEeCCccHHHHHHHHHHH
Confidence            88885 577788877753

>KOG3111|consensus

Probab=100.00  E-value=2.5e-59  Score=395.92  Aligned_cols=208  Identities=56%  Similarity=0.977  Sum_probs=196.4

Q ss_pred             CCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCC--eeeeeeeccCcHHhH
Q psy11600          3 HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA--FFETHMMVQNPQQWI   80 (277)
Q Consensus         3 ~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~--~~d~Hlmv~~p~~~i   80 (277)
                      .++++|+||||++|+.||++|+++++++|+||||+|||||+||||||||+.+|++||+. ++.  +||+||||.||++|+
T Consensus         2 ~~~~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~-~~~~~ffD~HmMV~~Peq~V   80 (224)
T KOG3111|consen    2 MVKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKH-TGADPFFDVHMMVENPEQWV   80 (224)
T ss_pred             CcCceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhc-cCCCcceeEEEeecCHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999985 555  599999999999999


Q ss_pred             HHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccce
Q psy11600         81 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGL  160 (277)
Q Consensus        81 ~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~  160 (277)
                      +.+.++|++.+|||+|+.+                                           .+.++.+.||+.|++.|+
T Consensus        81 ~~~a~agas~~tfH~E~~q-------------------------------------------~~~~lv~~ir~~Gmk~G~  117 (224)
T KOG3111|consen   81 DQMAKAGASLFTFHYEATQ-------------------------------------------KPAELVEKIREKGMKVGL  117 (224)
T ss_pred             HHHHhcCcceEEEEEeecc-------------------------------------------CHHHHHHHHHHcCCeeeE
Confidence            9999999999999999988                                           677899999999999999


Q ss_pred             eeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600        161 AIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---G  237 (277)
Q Consensus       161 ~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---g  237 (277)
                      ++|||||++.++++...+|++|+|+|+|||+||+|++++++|++++|+.+|+++|+||||+...|+..+.++|++.   |
T Consensus       118 alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaG  197 (224)
T KOG3111|consen  118 ALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAG  197 (224)
T ss_pred             EeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997   8


Q ss_pred             Cccccc-CHHHHHHHHHh
Q psy11600        238 GQKFMQ-DMMPKVKWLRE  254 (277)
Q Consensus       238 gq~F~~-~~~~kI~~l~~  254 (277)
                      +..|.. +.-+-|+.+|.
T Consensus       198 savf~a~d~~~vi~~lr~  215 (224)
T KOG3111|consen  198 SAVFGAADPSDVISLLRN  215 (224)
T ss_pred             ceeecCCCHHHHHHHHHH
Confidence            889984 66666666664

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=2.7e-57  Score=401.30  Aligned_cols=208  Identities=36%  Similarity=0.619  Sum_probs=194.2

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      ++.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++|||++++++|+..|++++||||||.||++|++.+.
T Consensus         3 ~~~i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~   82 (223)
T PRK08745          3 PTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFA   82 (223)
T ss_pred             CcEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHH
Confidence            34799999999999999999999999999999999999999999999999999998437999999999999999999999


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                      ++|+|+++||+|+.+                                           ++.+.++.||+.|+++|+++||
T Consensus        83 ~~gad~I~~H~Ea~~-------------------------------------------~~~~~l~~Ir~~g~k~GlalnP  119 (223)
T PRK08745         83 DAGATTISFHPEASR-------------------------------------------HVHRTIQLIKSHGCQAGLVLNP  119 (223)
T ss_pred             HhCCCEEEEcccCcc-------------------------------------------cHHHHHHHHHHCCCceeEEeCC
Confidence            999999999999877                                           7788999999999999999999


Q ss_pred             CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC----CCccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600        165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKCLTGF---G  237 (277)
Q Consensus       165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~----~~~~i~vdGgV~~~tv~~~~~~gpg~---g  237 (277)
                      +||++.++++++.+|++++|||+|||+||+|+++.++||++++++.    .++.|+|||||+.+|+++|.++|++.   |
T Consensus       120 ~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~G  199 (223)
T PRK08745        120 ATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAG  199 (223)
T ss_pred             CCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence            9999999999999999999999999999999999999999999873    45789999999999999999999996   8


Q ss_pred             Ccccc-cCHHHHHHHHHhh
Q psy11600        238 GQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       238 gq~F~-~~~~~kI~~l~~~  255 (277)
                      +..|. ++..+.++++|+.
T Consensus       200 SaiF~~~d~~~~~~~lr~~  218 (223)
T PRK08745        200 SAIFNAPDYAQVIAQMRAA  218 (223)
T ss_pred             hhhhCCCCHHHHHHHHHHH
Confidence            88886 4677778877754

>PRK08005 epimerase; Validated

Probab=100.00  E-value=2.8e-57  Score=397.26  Aligned_cols=203  Identities=28%  Similarity=0.427  Sum_probs=191.6

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      +.|+|||||+|+.+|++++++++++|+||+|+|||||+||||++|||++++++|+ +|++++|+||||.||++|++.+.+
T Consensus         1 ~~i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~-~t~~~~DvHLMv~~P~~~i~~~~~   79 (210)
T PRK08005          1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQ-QTRHPLSFHLMVSSPQRWLPWLAA   79 (210)
T ss_pred             CEEEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHh-cCCCCeEEEeccCCHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999999998 599999999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+|++|||+|+..                                           ++.+.++.||+.|+++|+++||+
T Consensus        80 ~gad~It~H~Ea~~-------------------------------------------~~~~~l~~Ik~~G~k~GlAlnP~  116 (210)
T PRK08005         80 IRPGWIFIHAESVQ-------------------------------------------NPSEILADIRAIGAKAGLALNPA  116 (210)
T ss_pred             hCCCEEEEcccCcc-------------------------------------------CHHHHHHHHHHcCCcEEEEECCC
Confidence            99999999999876                                           67789999999999999999999


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      ||++.++++++.+|++++|+|+|||+||+|++++++||++++++.++.+|+||||||.+|+++|.++|++.   |+..|.
T Consensus       117 Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~  196 (210)
T PRK08005        117 TPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFT  196 (210)
T ss_pred             CCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhC
Confidence            99999999999999999999999999999999999999999999888889999999999999999999996   788886


Q ss_pred             -cCHHHHHHHH
Q psy11600        243 -QDMMPKVKWL  252 (277)
Q Consensus       243 -~~~~~kI~~l  252 (277)
                       ++..+.++++
T Consensus       197 ~~d~~~~~~~~  207 (210)
T PRK08005        197 TANYDVTLSQF  207 (210)
T ss_pred             CCCHHHHHHHH
Confidence             3555666554

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=5.5e-56  Score=393.72  Aligned_cols=207  Identities=35%  Similarity=0.597  Sum_probs=190.6

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      +.+|+|||||+|+.+|+++++++++ |+||+|+|||||+||||++||+++++++|+ +|++++||||||.||++|++.|.
T Consensus         2 ~~~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~-~t~~~~DvHLMv~~P~~~i~~~~   79 (229)
T PRK09722          2 RMKISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKK-LASKPLDVHLMVTDPQDYIDQLA   79 (229)
T ss_pred             CceEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHh-cCCCCeEEEEEecCHHHHHHHHH
Confidence            3579999999999999999999998 899999999999999999999999999998 59999999999999999999999


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                      ++|+|+++||+|+.+.                                          ++.+.++.||+.|+++|+++||
T Consensus        80 ~aGad~it~H~Ea~~~------------------------------------------~~~~~i~~Ik~~G~kaGlalnP  117 (229)
T PRK09722         80 DAGADFITLHPETING------------------------------------------QAFRLIDEIRRAGMKVGLVLNP  117 (229)
T ss_pred             HcCCCEEEECccCCcc------------------------------------------hHHHHHHHHHHcCCCEEEEeCC
Confidence            9999999999997631                                          5678899999999999999999


Q ss_pred             CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600        165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---G  237 (277)
Q Consensus       165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---g  237 (277)
                      +||++.++++++.+|++++|+|+|||+||+|++++++||++++++.+    ++.|+|||||+.+|+.+|.++|++.   |
T Consensus       118 ~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~G  197 (229)
T PRK09722        118 ETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVG  197 (229)
T ss_pred             CCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence            99999999999999999999999999999999999999999998643    5789999999999999999999995   6


Q ss_pred             Cc-ccc--cCHHHHHHHHHhh
Q psy11600        238 GQ-KFM--QDMMPKVKWLREN  255 (277)
Q Consensus       238 gq-~F~--~~~~~kI~~l~~~  255 (277)
                      +. .|.  ++..+.++.+|+.
T Consensus       198 ss~iF~~~~d~~~~i~~l~~~  218 (229)
T PRK09722        198 TSGLFNLDEDIDEAWDIMTAQ  218 (229)
T ss_pred             hHHHcCCCCCHHHHHHHHHHH
Confidence            44 886  3677777777753

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=100.00  E-value=1.3e-55  Score=390.45  Aligned_cols=204  Identities=22%  Similarity=0.373  Sum_probs=190.2

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      +..|+|||||+|+.+|++++++++++|+||+|+|||||+||||++|||++++++|+   ++++||||||.||++|++.|.
T Consensus        12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~~~DvHLMv~~P~~~i~~~~   88 (228)
T PRK08091         12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT---HCFKDVHLMVRDQFEVAKACV   88 (228)
T ss_pred             CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC---CCCEEEEeccCCHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999973   789999999999999999999


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC--ccceee
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGLAI  162 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~--~~g~~i  162 (277)
                      ++|+|+++||+|+..                                           ++.+.++.||+.|+  ++|+++
T Consensus        89 ~aGad~It~H~Ea~~-------------------------------------------~~~~~l~~Ik~~g~~~kaGlal  125 (228)
T PRK08091         89 AAGADIVTLQVEQTH-------------------------------------------DLALTIEWLAKQKTTVLIGLCL  125 (228)
T ss_pred             HhCCCEEEEcccCcc-------------------------------------------cHHHHHHHHHHCCCCceEEEEE
Confidence            999999999999876                                           67789999999999  999999


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC----CCccEEEeCCCCcCcHHHHHHccCCC--
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKCLTGF--  236 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~----~~~~i~vdGgV~~~tv~~~~~~gpg~--  236 (277)
                      ||+||++.++++++.+|++++|||+|||+||+|++.+++||++++++.    .++.|+||||||.+|+++|.++|++.  
T Consensus       126 nP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V  205 (228)
T PRK08091        126 CPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVV  205 (228)
T ss_pred             CCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEE
Confidence            999999999999999999999999999999999999999999998764    35789999999999999999999996  


Q ss_pred             -CCcccc-cCHHHHHHHHHh
Q psy11600        237 -GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 -ggq~F~-~~~~~kI~~l~~  254 (277)
                       |+..|. ++..+.+++++.
T Consensus       206 ~GSalF~~~d~~~~i~~l~~  225 (228)
T PRK08091        206 SGSALFSQGELKTTLKEWKS  225 (228)
T ss_pred             EChhhhCCCCHHHHHHHHHH
Confidence             778886 466677777764

>PRK14057 epimerase; Provisional

Probab=100.00  E-value=3.1e-55  Score=392.27  Aligned_cols=205  Identities=22%  Similarity=0.312  Sum_probs=190.5

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      ++.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++|||++++++|+   ++|+||||||.||++|++.|.
T Consensus        19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~p~DvHLMV~~P~~~i~~~~   95 (254)
T PRK14057         19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ---TFIKDVHLMVADQWTAAQACV   95 (254)
T ss_pred             CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc---CCCeeEEeeeCCHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999975   589999999999999999999


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC--------
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--------  156 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~--------  156 (277)
                      ++|+|+++||+|+.+                                           ++.+.++.||+.|+        
T Consensus        96 ~aGad~It~H~Ea~~-------------------------------------------~~~~~l~~Ir~~G~k~~~~~~~  132 (254)
T PRK14057         96 KAGAHCITLQAEGDI-------------------------------------------HLHHTLSWLGQQTVPVIGGEMP  132 (254)
T ss_pred             HhCCCEEEEeecccc-------------------------------------------CHHHHHHHHHHcCCCccccccc
Confidence            999999999999877                                           67789999999997        


Q ss_pred             -ccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHH
Q psy11600        157 -KVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAK  231 (277)
Q Consensus       157 -~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~  231 (277)
                       ++|+++||+||++.++++++.+|++++|+|+|||+||+|++++++||++++++.+    ++.|+|||||+.+|+++|.+
T Consensus       133 ~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~  212 (254)
T PRK14057        133 VIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIA  212 (254)
T ss_pred             ceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence             5999999999999999999999999999999999999999999999999988643    58899999999999999999


Q ss_pred             ccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        232 CLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       232 ~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      +|++.   |+..|. ++..+.++.+|+.
T Consensus       213 aGad~~V~GSalF~~~d~~~~i~~l~~~  240 (254)
T PRK14057        213 QGIDRVVSGSALFRDDRLVENTRSWRAM  240 (254)
T ss_pred             CCCCEEEEChHhhCCCCHHHHHHHHHHH
Confidence            99996   788886 4667777777764

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=3.4e-55  Score=387.71  Aligned_cols=206  Identities=36%  Similarity=0.647  Sum_probs=193.3

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++|||++++++|+..|++++||||||.||++|++.|.++
T Consensus         1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~   80 (220)
T PRK08883          1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA   80 (220)
T ss_pred             CcchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999732799999999999999999999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|++|||+|+.+                                           ++.+.++.||+.|+++|+++||+|
T Consensus        81 gad~i~~H~Ea~~-------------------------------------------~~~~~l~~ik~~g~k~GlalnP~T  117 (220)
T PRK08883         81 GASMITFHVEASE-------------------------------------------HVDRTLQLIKEHGCQAGVVLNPAT  117 (220)
T ss_pred             CCCEEEEcccCcc-------------------------------------------cHHHHHHHHHHcCCcEEEEeCCCC
Confidence            9999999999877                                           778899999999999999999999


Q ss_pred             CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        167 PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       167 ~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      |++.+.++++.+|++++|+++|||+||+|++..++|+++++++..    ++.+++||||+.+|++.+.++|++.   |+.
T Consensus       118 p~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSa  197 (220)
T PRK08883        118 PLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSA  197 (220)
T ss_pred             CHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence            999999999999999999999999999999999999999988754    4789999999999999999999996   778


Q ss_pred             ccc-cCHHHHHHHHHhh
Q psy11600        240 KFM-QDMMPKVKWLREN  255 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~~  255 (277)
                      .|. ++..+.++++|+.
T Consensus       198 If~~~d~~~~i~~l~~~  214 (220)
T PRK08883        198 IFGQPDYKAVIDEMRAE  214 (220)
T ss_pred             HhCCCCHHHHHHHHHHH
Confidence            886 4778888888764

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=100.00  E-value=2.8e-55  Score=383.10  Aligned_cols=193  Identities=44%  Similarity=0.820  Sum_probs=172.0

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||+++++++|+. |++++|+||||.||.+|++.|.++
T Consensus         1 kI~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~P~~~i~~~~~~   79 (201)
T PF00834_consen    1 KISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVENPERYIEEFAEA   79 (201)
T ss_dssp             EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSSGGGHHHHHHHH
T ss_pred             CeehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc-CCCcEEEEeeeccHHHHHHHHHhc
Confidence            6999999999999999999999999999999999999999999999999999985 999999999999999999999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+++++||+|+..                                           ++.++++.||+.|+++|++++|+|
T Consensus        80 g~~~i~~H~E~~~-------------------------------------------~~~~~i~~ik~~g~k~GialnP~T  116 (201)
T PF00834_consen   80 GADYITFHAEATE-------------------------------------------DPKETIKYIKEAGIKAGIALNPET  116 (201)
T ss_dssp             T-SEEEEEGGGTT-------------------------------------------THHHHHHHHHHTTSEEEEEE-TTS
T ss_pred             CCCEEEEcccchh-------------------------------------------CHHHHHHHHHHhCCCEEEEEECCC
Confidence            9999999999876                                           778899999999999999999999


Q ss_pred             CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        167 PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       167 ~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      |++.++++++.+|++++|+++||++||+|++++++||++++++.+    ++.|+|||||+.+|+++|.++|++.   |+.
T Consensus       117 ~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~  196 (201)
T PF00834_consen  117 PVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSA  196 (201)
T ss_dssp             -GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHH
T ss_pred             CchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHH
Confidence            999999999999999999999999999999999999999988654    5999999999999999999999996   666


Q ss_pred             cccc
Q psy11600        240 KFMQ  243 (277)
Q Consensus       240 ~F~~  243 (277)
                      .|..
T Consensus       197 iF~~  200 (201)
T PF00834_consen  197 IFKA  200 (201)
T ss_dssp             HHTS
T ss_pred             HhCC
Confidence            6654

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=5.3e-48  Score=343.73  Aligned_cols=209  Identities=53%  Similarity=0.944  Sum_probs=195.3

Q ss_pred             CCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH
Q psy11600          3 HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP   82 (277)
Q Consensus         3 ~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~   82 (277)
                      |++.+|+|||+|+|+.+|+++++++++.|+|++|+|||||+||||++||++++++||+..|++++|+|||+.+|+++++.
T Consensus         4 ~~~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~   83 (228)
T PTZ00170          4 PLKAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDD   83 (228)
T ss_pred             CCCCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999987569999999999999999999


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCC-hHHHHHHHHHhCCcccee
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGLA  161 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~-~~~~~~~I~~~g~~~g~~  161 (277)
                      +.++|+|++|||+|+..                                           . +.+.++.+++.|++.|++
T Consensus        84 ~~~~Gad~itvH~ea~~-------------------------------------------~~~~~~l~~ik~~G~~~gva  120 (228)
T PTZ00170         84 FAKAGASQFTFHIEATE-------------------------------------------DDPKAVARKIREAGMKVGVA  120 (228)
T ss_pred             HHHcCCCEEEEeccCCc-------------------------------------------hHHHHHHHHHHHCCCeEEEE
Confidence            99999999999999865                                           4 667889999999999999


Q ss_pred             eCCCCCHHhHHHHH--hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---
Q psy11600        162 IKPKTPVDVIAEYI--ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---  236 (277)
Q Consensus       162 i~p~t~~~~i~~~i--~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---  236 (277)
                      ++|.|+++.+.+++  ..+|.+++|+++||+.||.|.++.++++++++++.+++.++|||||+.+|+..+.++|+++   
T Consensus       121 l~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVv  200 (228)
T PTZ00170        121 IKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVA  200 (228)
T ss_pred             ECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            99999999999999  8899999999999999999999999999999999888999999999999999999999996   


Q ss_pred             CCcccc-cCHHHHHHHHHh
Q psy11600        237 GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 ggq~F~-~~~~~kI~~l~~  254 (277)
                      |+..|. ++..+.++++++
T Consensus       201 GsaI~~a~d~~~~~~~i~~  219 (228)
T PTZ00170        201 GSSIFKAKDRKQAIELLRE  219 (228)
T ss_pred             chHHhCCCCHHHHHHHHHH
Confidence            888886 466666666664

>PLN02334 ribulose-phosphate 3-epimerase

Probab=100.00  E-value=9.2e-37  Score=271.48  Aligned_cols=210  Identities=48%  Similarity=0.844  Sum_probs=192.3

Q ss_pred             CCCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH
Q psy11600          2 SHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE   81 (277)
Q Consensus         2 ~~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~   81 (277)
                      |.-+..|+||++|+|+.++.++++++++.|++++|+|+|||+|+||++||++.++++|+. |+.++++|||+.||.++++
T Consensus         4 ~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~~~~vhlmv~~p~d~~~   82 (229)
T PLN02334          4 SKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDAPLDCHLMVTNPEDYVP   82 (229)
T ss_pred             ccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCCcEEEEeccCCHHHHHH
Confidence            334456999999999999999999999999999999999999999999999999999985 9999999999999999999


Q ss_pred             HHHhcCCCeEEEecc--CCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccc
Q psy11600         82 PMADANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG  159 (277)
Q Consensus        82 ~l~~ag~d~i~~H~e--~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g  159 (277)
                      .+.++|+|++|||++  ..+                                           .+...++.++..|++.|
T Consensus        83 ~~~~~gad~v~vH~~q~~~d-------------------------------------------~~~~~~~~i~~~g~~iG  119 (229)
T PLN02334         83 DFAKAGASIFTFHIEQASTI-------------------------------------------HLHRLIQQIKSAGMKAG  119 (229)
T ss_pred             HHHHcCCCEEEEeeccccch-------------------------------------------hHHHHHHHHHHCCCeEE
Confidence            999999999999999  345                                           56678888999999999


Q ss_pred             eeeCCCCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC-
Q psy11600        160 LAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF-  236 (277)
Q Consensus       160 ~~i~p~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~-  236 (277)
                      +.++|.|+.+.+.+++..  +|++++|+++||+++|+|.+..+++++++++..++..+++||||+.+|+.++.++|++. 
T Consensus       120 ls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~v  199 (229)
T PLN02334        120 VVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVI  199 (229)
T ss_pred             EEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEE
Confidence            999999999999999999  99999999999999999999999999999988788899999999999999999999996 


Q ss_pred             --CCcccc-cCHHHHHHHHHhh
Q psy11600        237 --GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       237 --ggq~F~-~~~~~kI~~l~~~  255 (277)
                        |+..|. ++..+.++++++.
T Consensus       200 vvgsai~~~~d~~~~~~~l~~~  221 (229)
T PLN02334        200 VAGSAVFGAPDYAEVISGLRAS  221 (229)
T ss_pred             EEChHHhCCCCHHHHHHHHHHH
Confidence              788886 4677777777753

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.1e-35  Score=255.26  Aligned_cols=164  Identities=24%  Similarity=0.397  Sum_probs=142.3

Q ss_pred             CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600         65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMA  127 (277)
Q Consensus        65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~  127 (277)
                      ..+...++.+|   ++++++.+.++|+||+  |+|+|||        ||.+++++|+.|+.++|+      |++|+++|+
T Consensus         4 ~~iapSILsaD~~~l~~el~~~~~agad~i--H~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa   81 (220)
T COG0036           4 MKIAPSILSADFARLGEELKALEAAGADLI--HIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA   81 (220)
T ss_pred             ceeeeehhhCCHhHHHHHHHHHHHcCCCEE--EEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHH
Confidence            45667777776   5667999999999999  9999997        999999999999887765      999999999


Q ss_pred             hcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHH
Q psy11600        128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR  207 (277)
Q Consensus       128 ~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~  207 (277)
                      ++|||+||||+|   +..++.++|++                     |++.++..++++||+||           ++.+.
T Consensus        82 ~agad~It~H~E---~~~~~~r~i~~---------------------Ik~~G~kaGv~lnP~Tp-----------~~~i~  126 (220)
T COG0036          82 KAGADIITFHAE---ATEHIHRTIQL---------------------IKELGVKAGLVLNPATP-----------LEALE  126 (220)
T ss_pred             HhCCCEEEEEec---cCcCHHHHHHH---------------------HHHcCCeEEEEECCCCC-----------HHHHH
Confidence            999999999999   99999998876                     45556666689999998           56667


Q ss_pred             hhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC---CCeEEEeCCCCccCHHHhh
Q psy11600        208 ENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       208 ~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~---~~~I~VDGGI~~~~~~~~~  276 (277)
                      .+++.+|+++.     ||+      +||||||+|++++++||+++|++..   ++.||||||||.+|+++++
T Consensus       127 ~~l~~vD~Vll-----MsV------nPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~  187 (220)
T COG0036         127 PVLDDVDLVLL-----MSV------NPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLA  187 (220)
T ss_pred             HHHhhCCEEEE-----EeE------CCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHH
Confidence            77778888864     554      4999999999999999999999766   6889999999999999886

>KOG3111|consensus

Probab=100.00  E-value=3.1e-34  Score=243.33  Aligned_cols=156  Identities=37%  Similarity=0.635  Sum_probs=136.8

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCC--cccc------hhhhhHHHHhcCCCeEEee
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMK--VGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~--~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      .|++++..++.++|+||+  |+|+|||        ||.+|+++|+++..  .+|+      |++|+++|+++||+.+|||
T Consensus        17 anL~~e~~~~l~~Gadwl--HlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH   94 (224)
T KOG3111|consen   17 ANLAAECKKMLDAGADWL--HLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFH   94 (224)
T ss_pred             HHHHHHHHHHHHcCCCeE--EEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEE
Confidence            468888999999999999  9999997        99999999999755  3554      9999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600        138 VEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       138 ~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                      +|   .++...++++                     +++..+++.+++++|||+           ++.+.++...+|+++
T Consensus        95 ~E---~~q~~~~lv~---------------------~ir~~Gmk~G~alkPgT~-----------Ve~~~~~~~~~D~vL  139 (224)
T KOG3111|consen   95 YE---ATQKPAELVE---------------------KIREKGMKVGLALKPGTP-----------VEDLEPLAEHVDMVL  139 (224)
T ss_pred             Ee---eccCHHHHHH---------------------HHHHcCCeeeEEeCCCCc-----------HHHHHHhhccccEEE
Confidence            99   8887666665                     456677777799999998           667777777888886


Q ss_pred             eCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600        218 DGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       218 dGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                           +||+      +||||||+|++++++||++||+++|++.||||||++++|+.++++
T Consensus       140 -----vMtV------ePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~  188 (224)
T KOG3111|consen  140 -----VMTV------EPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAE  188 (224)
T ss_pred             -----EEEe------cCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHH
Confidence                 6776      599999999999999999999999999999999999999988763

>PRK08005 epimerase; Validated

Probab=100.00  E-value=9.2e-33  Score=242.30  Aligned_cols=163  Identities=18%  Similarity=0.208  Sum_probs=139.0

Q ss_pred             eeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhc
Q psy11600         67 FETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADA  129 (277)
Q Consensus        67 ~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~  129 (277)
                      +...+|..|+   +++++++.++|+|++  |+|+|||        ||++++++|+.|..++|+      |++|++.|+++
T Consensus         3 i~pSil~ad~~~l~~el~~l~~~g~d~l--HiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~   80 (210)
T PRK08005          3 LHPSLASADPLRYAEALTALHDAPLGSL--HLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI   80 (210)
T ss_pred             EEeehhhCCHHHHHHHHHHHHHCCCCEE--EEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh
Confidence            4566777764   557999999999999  9999997        999999999999877665      99999999999


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh
Q psy11600        130 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN  209 (277)
Q Consensus       130 g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~  209 (277)
                      |||+||||+|   +..++.+.|++                     |++.++..++++||+|+           ++.+.++
T Consensus        81 gad~It~H~E---a~~~~~~~l~~---------------------Ik~~G~k~GlAlnP~Tp-----------~~~i~~~  125 (210)
T PRK08005         81 RPGWIFIHAE---SVQNPSEILAD---------------------IRAIGAKAGLALNPATP-----------LLPYRYL  125 (210)
T ss_pred             CCCEEEEccc---CccCHHHHHHH---------------------HHHcCCcEEEEECCCCC-----------HHHHHHH
Confidence            9999999999   98887777765                     45666667789999998           5566666


Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      .+.+|..+     +||+      +||||||.|++++++||+++|+++++.+||||||||.+|++++++
T Consensus       126 l~~vD~Vl-----vMsV------~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~  182 (210)
T PRK08005        126 ALQLDALM-----IMTS------EPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAA  182 (210)
T ss_pred             HHhcCEEE-----EEEe------cCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHH
Confidence            66778776     5555      599999999999999999999988777899999999999998863

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=99.97  E-value=1e-31  Score=237.99  Aligned_cols=165  Identities=24%  Similarity=0.366  Sum_probs=138.8

Q ss_pred             CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhh-CCCcccc------hhhhhHHH
Q psy11600         65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEA-GMKVGQV------LQDWIEPM  126 (277)
Q Consensus        65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~-~~~~~d~------p~~~i~~~  126 (277)
                      +.+...+|..|   ++++++++.++|+||+  |+|+|||        ||++++++|+. ++.++|+      |++|++.|
T Consensus         4 ~~i~pSil~ad~~~l~~~i~~l~~~g~d~l--HiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~   81 (223)
T PRK08745          4 TAIAPSILSADFARLGEEVDNVLKAGADWV--HFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDF   81 (223)
T ss_pred             cEEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHH
Confidence            34677788886   4557999999999999  9999998        99999999998 6777654      99999999


Q ss_pred             HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL  206 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l  206 (277)
                      +++|||+||||+|   +..++.+.++.                     |++.++..++++||+|+           ++.+
T Consensus        82 ~~~gad~I~~H~E---a~~~~~~~l~~---------------------Ir~~g~k~GlalnP~T~-----------~~~i  126 (223)
T PRK08745         82 ADAGATTISFHPE---ASRHVHRTIQL---------------------IKSHGCQAGLVLNPATP-----------VDIL  126 (223)
T ss_pred             HHhCCCEEEEccc---CcccHHHHHHH---------------------HHHCCCceeEEeCCCCC-----------HHHH
Confidence            9999999999999   98887777765                     45556666689999998           5666


Q ss_pred             HhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh----CCCCeEEEeCCCCccCHHHhhC
Q psy11600        207 RENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       207 ~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~----~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      .++++.+|.++     +||+      +||||||.|++++++||+++|++    .+++.|+||||||.+|++++++
T Consensus       127 ~~~l~~vD~Vl-----vMtV------~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~  190 (223)
T PRK08745        127 DWVLPELDLVL-----VMSV------NPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAA  190 (223)
T ss_pred             HHHHhhcCEEE-----EEEE------CCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHH
Confidence            66677788876     5555      59999999999999999999986    3457899999999999998863

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=99.97  E-value=3.6e-31  Score=234.49  Aligned_cols=164  Identities=12%  Similarity=0.115  Sum_probs=137.2

Q ss_pred             CCeeeeeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCccc---c---hhhhhHHH
Q psy11600         64 KAFFETHMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQ---V---LQDWIEPM  126 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d---~---p~~~i~~~  126 (277)
                      ...+...++..|+.   ++++++.++|+||+  |+|+|||        ||++|+++|+  +.++|   |   |++|++.|
T Consensus        12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~l--HiDVMDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~   87 (228)
T PRK08091         12 QQPISVGILASNWLKFNETLTTLSENQLRLL--HFDIADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKAC   87 (228)
T ss_pred             CCeEEeehhhcCHHHHHHHHHHHHHCCCCEE--EEeccCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHH
Confidence            35789999999754   57999999999999  9999998        9999999985  44444   3   99999999


Q ss_pred             HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCc--eEEEEecCCCCCchhhhhhhhhHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL--VLIMTVEPGFGGQKFMQDMMPKVK  204 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~--vl~mav~Pgt~gq~~~~~~l~kI~  204 (277)
                      +++|||+||||+|   +..++.+.|++                     |++.++  ..++++||+|+           ++
T Consensus        88 ~~aGad~It~H~E---a~~~~~~~l~~---------------------Ik~~g~~~kaGlalnP~Tp-----------~~  132 (228)
T PRK08091         88 VAAGADIVTLQVE---QTHDLALTIEW---------------------LAKQKTTVLIGLCLCPETP-----------IS  132 (228)
T ss_pred             HHhCCCEEEEccc---CcccHHHHHHH---------------------HHHCCCCceEEEEECCCCC-----------HH
Confidence            9999999999999   98887777765                     455555  66789999998           56


Q ss_pred             HHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhhC
Q psy11600        205 WLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       205 ~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      .+.++++.+|..+     +||+      +||||||.|++++++||+++|+++    +++.|+||||||.+|++++++
T Consensus       133 ~i~~~l~~vD~VL-----iMtV------~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~  198 (228)
T PRK08091        133 LLEPYLDQIDLIQ-----ILTL------DPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQ  198 (228)
T ss_pred             HHHHHHhhcCEEE-----EEEE------CCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence            6666677788876     5555      599999999999999999999753    457899999999999998863

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=99.97  E-value=1.1e-31  Score=234.62  Aligned_cols=162  Identities=26%  Similarity=0.429  Sum_probs=130.4

Q ss_pred             eeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhc
Q psy11600         67 FETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADA  129 (277)
Q Consensus        67 ~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~  129 (277)
                      +...+|..|   ++++++++.++|+||+  |+|+|||        ||++++++|+.+..++|+      |++|++.|+++
T Consensus         2 I~pSil~ad~~~l~~~i~~l~~~g~d~l--HiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~   79 (201)
T PF00834_consen    2 ISPSILSADFLNLEEEIKRLEEAGADWL--HIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEA   79 (201)
T ss_dssp             EEEBGGGS-GGGHHHHHHHHHHTT-SEE--EEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHH
T ss_pred             eehhhhhCCHHHHHHHHHHHHHcCCCEE--EEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhc
Confidence            445566665   5668999999999999  9999997        999999999999887765      99999999999


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh
Q psy11600        130 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN  209 (277)
Q Consensus       130 g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~  209 (277)
                      |+++||||+|   +..++.+++++                     +++.++..++++||+|+           ++.+.++
T Consensus        80 g~~~i~~H~E---~~~~~~~~i~~---------------------ik~~g~k~GialnP~T~-----------~~~~~~~  124 (201)
T PF00834_consen   80 GADYITFHAE---ATEDPKETIKY---------------------IKEAGIKAGIALNPETP-----------VEELEPY  124 (201)
T ss_dssp             T-SEEEEEGG---GTTTHHHHHHH---------------------HHHTTSEEEEEE-TTS------------GGGGTTT
T ss_pred             CCCEEEEccc---chhCHHHHHHH---------------------HHHhCCCEEEEEECCCC-----------chHHHHH
Confidence            9999999999   98888877764                     56677788899999998           4455566


Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .+.+|.++     +||+      +||||||.|++++++||+++|++.    +++.|+||||||.+|+++++
T Consensus       125 l~~vD~Vl-----vMsV------~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~  184 (201)
T PF00834_consen  125 LDQVDMVL-----VMSV------EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLV  184 (201)
T ss_dssp             GCCSSEEE-----EESS-------TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHH
T ss_pred             hhhcCEEE-----EEEe------cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHH
Confidence            67788876     4554      499999999999999999999754    46999999999999999886

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=99.97  E-value=4.8e-31  Score=234.26  Aligned_cols=163  Identities=28%  Similarity=0.386  Sum_probs=136.2

Q ss_pred             CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600         65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMA  127 (277)
Q Consensus        65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~  127 (277)
                      ..+...++..|   ++++++.+.+ |+||+  |+|+|||        ||++++++|+.|..++|+      |++|++.|+
T Consensus         3 ~~I~pSil~ad~~~l~~el~~l~~-g~d~l--H~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~   79 (229)
T PRK09722          3 MKISPSLMCMDLLKFKEQIEFLNS-KADYF--HIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLA   79 (229)
T ss_pred             ceEEeehhhcCHHHHHHHHHHHHh-CCCEE--EEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHH
Confidence            34677788886   4557888877 99999  9999998        999999999998877665      999999999


Q ss_pred             hcCCCeEEeecCCCCCh-HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600        128 DANVDQYTFHVEPVDNV-PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL  206 (277)
Q Consensus       128 ~~g~d~it~H~E~~~~~-~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l  206 (277)
                      ++|||+||||+|   +. .++.+.|+.                     |++.++..++++||+|+           ++.+
T Consensus        80 ~aGad~it~H~E---a~~~~~~~~i~~---------------------Ik~~G~kaGlalnP~T~-----------~~~l  124 (229)
T PRK09722         80 DAGADFITLHPE---TINGQAFRLIDE---------------------IRRAGMKVGLVLNPETP-----------VESI  124 (229)
T ss_pred             HcCCCEEEECcc---CCcchHHHHHHH---------------------HHHcCCCEEEEeCCCCC-----------HHHH
Confidence            999999999999   76 477777764                     55666666789999998           5666


Q ss_pred             HhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600        207 RENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       207 ~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .++++.+|.++     +||+      +||||||.|++++++||+++|++.    .++.||||||||.+|+++++
T Consensus       125 ~~~l~~vD~VL-----vMsV------~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~  187 (229)
T PRK09722        125 KYYIHLLDKIT-----VMTV------DPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLM  187 (229)
T ss_pred             HHHHHhcCEEE-----EEEE------cCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence            66777788876     4554      499999999999999999999753    35789999999999999875

>PRK14057 epimerase; Provisional

Probab=99.97  E-value=5.3e-31  Score=236.13  Aligned_cols=174  Identities=10%  Similarity=0.100  Sum_probs=140.4

Q ss_pred             CCCeeeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHH
Q psy11600         63 PKAFFETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEP  125 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~  125 (277)
                      ...++...+|..|+   +++++++.++|+||+  |+|+|||        ||++++++|+  +.++|+      |++|++.
T Consensus        18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~l--HiDVMDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~   93 (254)
T PRK14057         18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLL--HLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQA   93 (254)
T ss_pred             cCCceEeehhhcCHHHHHHHHHHHHHCCCCEE--EEeccCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHH
Confidence            67899999999974   557999999999999  9999998        9999999987  345443      9999999


Q ss_pred             HHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600        126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW  205 (277)
Q Consensus       126 ~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~  205 (277)
                      |+++|||+||||+|   +..++.+.|+++   +..|++.         .-...++..++++||+|+           ++.
T Consensus        94 ~~~aGad~It~H~E---a~~~~~~~l~~I---r~~G~k~---------~~~~~~~kaGlAlnP~Tp-----------~e~  147 (254)
T PRK14057         94 CVKAGAHCITLQAE---GDIHLHHTLSWL---GQQTVPV---------IGGEMPVIRGISLCPATP-----------LDV  147 (254)
T ss_pred             HHHhCCCEEEEeec---cccCHHHHHHHH---HHcCCCc---------ccccccceeEEEECCCCC-----------HHH
Confidence            99999999999999   988888888775   2333210         000122467799999998           566


Q ss_pred             HHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhhC
Q psy11600        206 LRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       206 l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      +.++++.+|..+     +||+      +||||||.|++++++||+++|++.    .++.|+||||||.+|++++++
T Consensus       148 i~~~l~~vD~VL-----vMtV------~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~  212 (254)
T PRK14057        148 IIPILSDVEVIQ-----LLAV------NPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIA  212 (254)
T ss_pred             HHHHHHhCCEEE-----EEEE------CCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence            666777788876     4555      599999999999999999999753    358899999999999998863

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=99.97  E-value=2.8e-30  Score=225.24  Aligned_cols=201  Identities=40%  Similarity=0.720  Sum_probs=178.3

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      |+|||+|+|+.++.++++.+.+.|+|++|+|+|||+|+||+++|++.++++|+. ++.++++|+|+.++.++++.+.++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~v~lm~~~~~~~~~~~~~~g   79 (210)
T TIGR01163         1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPIDVHLMVENPDRYIEDFAEAG   79 (210)
T ss_pred             CcchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcC
Confidence            589999999999999999999999999999999999999999999999999974 8889999999999999999999999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP  167 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~  167 (277)
                      +|.+++|.+..+                                           .....++.+++.|.+.++++.+.++
T Consensus        80 adgv~vh~~~~~-------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~t~  116 (210)
T TIGR01163        80 ADIITVHPEASE-------------------------------------------HIHRLLQLIKDLGAKAGIVLNPATP  116 (210)
T ss_pred             CCEEEEccCCch-------------------------------------------hHHHHHHHHHHcCCcEEEEECCCCC
Confidence            999999987655                                           4566778888899999999999999


Q ss_pred             HHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600        168 VDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       168 ~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~  240 (277)
                      .+.+..+...+|.++.+++.||++|+.|.+..++++++++++..    .+.+.++|||+.+|+.++.+.|++.   |+..
T Consensus       117 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai  196 (210)
T TIGR01163       117 LEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAI  196 (210)
T ss_pred             HHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHH
Confidence            99999988889999999999999999888888899888876543    3678999999999999999999995   7777


Q ss_pred             ccc-CHHHHHHHH
Q psy11600        241 FMQ-DMMPKVKWL  252 (277)
Q Consensus       241 F~~-~~~~kI~~l  252 (277)
                      |.+ +..+.++++
T Consensus       197 ~~~~d~~~~~~~~  209 (210)
T TIGR01163       197 FGADDYKEVIRSL  209 (210)
T ss_pred             hCCCCHHHHHHHh
Confidence            763 555555543

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=99.97  E-value=3.9e-29  Score=219.89  Aligned_cols=206  Identities=40%  Similarity=0.752  Sum_probs=183.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ..|+|||+++|+.++.++++.+.+.|++++|+|+|||.|+||++++++.++++++..+ .++++|||+.++.++++.+.+
T Consensus         4 ~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~d~~~~i~~~~~   82 (220)
T PRK05581          4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK-LPLDVHLMVENPDRYVPDFAK   82 (220)
T ss_pred             cEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC-CcEEEEeeeCCHHHHHHHHHH
Confidence            3599999999999999999999999999999999999999999999999999997644 789999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+|++++|.+..+                                           ......+.++..|.+.|+.+.|.
T Consensus        83 ~g~d~v~vh~~~~~-------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~  119 (220)
T PRK05581         83 AGADIITFHVEASE-------------------------------------------HIHRLLQLIKSAGIKAGLVLNPA  119 (220)
T ss_pred             cCCCEEEEeeccch-------------------------------------------hHHHHHHHHHHcCCEEEEEECCC
Confidence            99999999988655                                           45567888899999999999889


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC----ccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT----LNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~----~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      |+.+.+..+...+|+++++++.||+.||.+....++++++++++.+.    +.++++|||+.+|+.++.++|++.   |+
T Consensus       120 t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS  199 (220)
T PRK05581        120 TPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS  199 (220)
T ss_pred             CCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence            99988888888899999999999999999999999999988876542    568899999999999999999995   78


Q ss_pred             cccc-cCHHHHHHHHHhh
Q psy11600        239 QKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       239 q~F~-~~~~~kI~~l~~~  255 (277)
                      ..|. ++..+..+++++.
T Consensus       200 ai~~~~d~~~~~~~~~~~  217 (220)
T PRK05581        200 AVFGAPDYKEAIDSLRAE  217 (220)
T ss_pred             hhhCCCCHHHHHHHHHHH
Confidence            8886 5777777777653

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=99.97  E-value=4.9e-30  Score=227.09  Aligned_cols=161  Identities=22%  Similarity=0.339  Sum_probs=134.0

Q ss_pred             eeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhh-CCCcccc------hhhhhHHHHhcC
Q psy11600         69 THMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEA-GMKVGQV------LQDWIEPMADAN  130 (277)
Q Consensus        69 ~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~-~~~~~d~------p~~~i~~~~~~g  130 (277)
                      ..++..|   ++++++++.++|+||+  |+|+|||        ||++++++|+. ++.++|+      |++|++.|+++|
T Consensus         4 pSil~ad~~~l~~~i~~l~~~g~~~l--H~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~g   81 (220)
T PRK08883          4 PSILSADFARLGEDVEKVLAAGADVV--HFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAG   81 (220)
T ss_pred             hhhhhcCHHHHHHHHHHHHHcCCCEE--EEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhC
Confidence            3455555   5568999999999999  9999998        99999999998 6766654      999999999999


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC
Q psy11600        131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY  210 (277)
Q Consensus       131 ~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~  210 (277)
                      ||+||||+|   +..++.+.++.                     +++.++..++++||+|+           ++.+.++.
T Consensus        82 ad~i~~H~E---a~~~~~~~l~~---------------------ik~~g~k~GlalnP~Tp-----------~~~i~~~l  126 (220)
T PRK08883         82 ASMITFHVE---ASEHVDRTLQL---------------------IKEHGCQAGVVLNPATP-----------LHHLEYIM  126 (220)
T ss_pred             CCEEEEccc---CcccHHHHHHH---------------------HHHcCCcEEEEeCCCCC-----------HHHHHHHH
Confidence            999999999   98888777765                     45555566689999998           56666667


Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhhC
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~~  277 (277)
                      +.+|..+.     ||+      +||||||.|++..++||+++|++..    ++.|+||||||.+|++++++
T Consensus       127 ~~~D~vlv-----MtV------~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~  186 (220)
T PRK08883        127 DKVDLILL-----MSV------NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAE  186 (220)
T ss_pred             HhCCeEEE-----EEe------cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHH
Confidence            77888764     444      4999999999999999999998643    47899999999999998753

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=99.95  E-value=7.3e-27  Score=203.42  Aligned_cols=202  Identities=48%  Similarity=0.813  Sum_probs=176.8

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +|+|||+|+|+.++.++++.+.+.|++++|+|++||.|.|+..+|++.++++|+.+ +.++++|||+.||.++++.+.++
T Consensus         1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~~~d~~~~~~~~~~~   79 (211)
T cd00429           1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLPLDVHLMVENPERYIEAFAKA   79 (211)
T ss_pred             CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CCcEEEEeeeCCHHHHHHHHHHc
Confidence            58999999999999999999999999999999999999999999999999999864 78899999999999999999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|++++|.+..+                                           ......+.+++.|.+.|+.+.+.+
T Consensus        80 g~dgv~vh~~~~~-------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~  116 (211)
T cd00429          80 GADIITFHAEATD-------------------------------------------HLHRTIQLIKELGMKAGVALNPGT  116 (211)
T ss_pred             CCCEEEECccchh-------------------------------------------hHHHHHHHHHHCCCeEEEEecCCC
Confidence            9999999987665                                           445667788888888999998888


Q ss_pred             CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        167 PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       167 ~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      +.+.+..+...+|++.++++.||+.++.+-...+++++++++..+    ++.+.++|||+.+++.++.+.|++.   |+.
T Consensus       117 ~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsa  196 (211)
T cd00429         117 PVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSA  196 (211)
T ss_pred             CHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHH
Confidence            888788887779999999999999888888888888888877654    5789999999999999999999995   777


Q ss_pred             ccc-cCHHHHHHHH
Q psy11600        240 KFM-QDMMPKVKWL  252 (277)
Q Consensus       240 ~F~-~~~~~kI~~l  252 (277)
                      .|. ++..+.++++
T Consensus       197 i~~~~~~~~~~~~~  210 (211)
T cd00429         197 LFGSDDYAEAIKEL  210 (211)
T ss_pred             HhCCCCHHHHHHHh
Confidence            776 4555666554

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=99.92  E-value=1.2e-24  Score=193.85  Aligned_cols=164  Identities=29%  Similarity=0.487  Sum_probs=133.6

Q ss_pred             CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhC-CCcccc------hhhhhHHH
Q psy11600         65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAG-MKVGQV------LQDWIEPM  126 (277)
Q Consensus        65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~-~~~~d~------p~~~i~~~  126 (277)
                      ..+.+.+|..|   ++++++.+.++|+|++  |+|+|||        |+++++++|+.+ ..++|+      |..|++.+
T Consensus         7 ~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~--H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~   84 (228)
T PTZ00170          7 AIIAPSILAADFSKLADEAQDVLSGGADWL--HVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDF   84 (228)
T ss_pred             CEEehhHhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH
Confidence            45677888887   4567999999999999  9999997        999999999998 556654      99999999


Q ss_pred             HhcCCCeEEeecCCCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW  205 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~  205 (277)
                      +++|||++|||.|   +..+ +.+.++                     .+++.+..++++++|.|+.           +.
T Consensus        85 ~~~Gad~itvH~e---a~~~~~~~~l~---------------------~ik~~G~~~gval~p~t~~-----------e~  129 (228)
T PTZ00170         85 AKAGASQFTFHIE---ATEDDPKAVAR---------------------KIREAGMKVGVAIKPKTPV-----------EV  129 (228)
T ss_pred             HHcCCCEEEEecc---CCchHHHHHHH---------------------HHHHCCCeEEEEECCCCCH-----------HH
Confidence            9999999999999   8766 444444                     4566677888999999973           33


Q ss_pred             HHhhC--CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        206 LRENY--PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       206 l~~~~--~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ++++.  +.++.++     .|++      .||++||.|.+.+++|++++++..+...|+||||||++|++.++
T Consensus       130 l~~~l~~~~vD~Vl-----~m~v------~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~  191 (228)
T PTZ00170        130 LFPLIDTDLVDMVL-----VMTV------EPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAA  191 (228)
T ss_pred             HHHHHccchhhhHH-----hhhc------ccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHH
Confidence            33333  3344432     4565      59999999999999999999998888999999999999998875

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.88  E-value=4.3e-22  Score=178.84  Aligned_cols=184  Identities=23%  Similarity=0.303  Sum_probs=157.3

Q ss_pred             eeccccCcc--cHHHHHHHHHHcCCCEEEEe------ccccccccCCC-----------CCHHHHHHHHhcCCCCeeeee
Q psy11600         10 PSILNSDLS--NLHSESQNLLDSGADYLHLD------VMDGTFVPNLT-----------FGHPVVKCLRNKIPKAFFETH   70 (277)
Q Consensus        10 ~s~~~~d~~--~l~~~~~~l~~~~~~~~h~D------imDg~fvp~~~-----------~g~~~v~~l~~~~~~~~~d~H   70 (277)
                      |=+.+.++.  ++.+.++.+++.|+|++|+|      +|||+|++|.+           ++++.++++|+. .++|  +|
T Consensus         4 ~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~p--v~   80 (242)
T cd04724           4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIP--IV   80 (242)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCC--EE
Confidence            444555554  78899999999999999999      99999999977           899999999986 4666  69


Q ss_pred             eecc-Cc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCC
Q psy11600         71 MMVQ-NP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDN  143 (277)
Q Consensus        71 lmv~-~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~  143 (277)
                      ||+. ||      +++++.+.++|++.+++|-.                                        |+|   .
T Consensus        81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl----------------------------------------~~e---e  117 (242)
T cd04724          81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL----------------------------------------PPE---E  117 (242)
T ss_pred             EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC----------------------------------------CHH---H
Confidence            9999 87      78888888889888887521                                        223   4


Q ss_pred             hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        144 VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       144 ~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                      ..+..+.+++.|++.+..++|.|+.+.++++++ ..|++.+|+++|+|++|. |.+...++++++++. .++.+.++|||
T Consensus       118 ~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI  196 (242)
T cd04724         118 AEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGI  196 (242)
T ss_pred             HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccC
Confidence            567888999999999999999999999999998 899999999999999998 888899999999986 58899999999


Q ss_pred             Cc-CcHHHHHHccCCC---CCccc
Q psy11600        222 GP-NTIDECAKCLTGF---GGQKF  241 (277)
Q Consensus       222 ~~-~tv~~~~~~gpg~---ggq~F  241 (277)
                      +- ++++.+.++ ++.   |+..|
T Consensus       197 ~~~e~~~~~~~~-ADgvVvGSaiv  219 (242)
T cd04724         197 STPEQAAEVAKY-ADGVIVGSALV  219 (242)
T ss_pred             CCHHHHHHHHcc-CCEEEECHHHH
Confidence            95 499999998 874   65544

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.85  E-value=9.6e-21  Score=179.88  Aligned_cols=202  Identities=16%  Similarity=0.220  Sum_probs=166.5

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV   88 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~   88 (277)
                      +++.|..++++.++.+++.+ ++- +++..  ..+.  .+||+++|++||+..|++++++|||+.||.++ ++.+.++|+
T Consensus       176 ~vALD~~~~~~A~~i~~~l~-~~~-~~~iKvG~~L~--~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGA  251 (391)
T PRK13307        176 QVALDLPDLEEVERVLSQLP-KSD-HIIIEAGTPLI--KKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATA  251 (391)
T ss_pred             EEecCCCCHHHHHHHHHhcc-ccc-ceEEEECHHHH--HHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCC
Confidence            56789999999999988873 221 34556  3444  56899999999997799999999999999999 889999999


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccce-eeCCCCC
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGL-AIKPKTP  167 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~-~i~p~t~  167 (277)
                      |++|||.++...                                          ++....+.+++.|++.++ .++|.++
T Consensus       252 D~vTVH~ea~~~------------------------------------------ti~~ai~~akk~GikvgVD~lnp~tp  289 (391)
T PRK13307        252 DAVVISGLAPIS------------------------------------------TIEKAIHEAQKTGIYSILDMLNVEDP  289 (391)
T ss_pred             CEEEEeccCCHH------------------------------------------HHHHHHHHHHHcCCEEEEEEcCCCCH
Confidence            999999987541                                          356788889999999999 9999999


Q ss_pred             HHhHHHHHhhcCceEEEE-ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-
Q psy11600        168 VDVIAEYIESADLVLIMT-VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-  242 (277)
Q Consensus       168 ~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-  242 (277)
                      .+.+.++....|++++|+ ++|++  +   ...+++|++++++..++.+++||||+.+|++.+.++|+++   |+..|. 
T Consensus       290 ~e~i~~l~~~vD~Vllht~vdp~~--~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a  364 (391)
T PRK13307        290 VKLLESLKVKPDVVELHRGIDEEG--T---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKS  364 (391)
T ss_pred             HHHHHHhhCCCCEEEEccccCCCc--c---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence            999999988899999997 99983  2   3466799999988778899999999999999999999996   888887 


Q ss_pred             cCHHHHHHHHHhhC----CCCeEEEe
Q psy11600        243 QDMMPKVKWLRENY----PTLNIEVD  264 (277)
Q Consensus       243 ~~~~~kI~~l~~~~----~~~~I~VD  264 (277)
                      ++..+.++++++..    .+++|.-|
T Consensus       365 ~Dp~~aak~l~~~i~~~~~~~~~~~~  390 (391)
T PRK13307        365 KDVRRAAEDFLNKLKPDIDQFRLMTD  390 (391)
T ss_pred             CCHHHHHHHHHHhhccCchhheeecC
Confidence            47777778777643    24555544

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.84  E-value=3.3e-20  Score=164.00  Aligned_cols=196  Identities=13%  Similarity=0.177  Sum_probs=166.0

Q ss_pred             eccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH-HHHhcC
Q psy11600         11 SILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE-PMADAN   87 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~-~l~~ag   87 (277)
                      =+++.|..++++.++.+++. .++  +|+..  .++.  +++|+++++.||+.+|++++++|||+.|+.+++. .+.++|
T Consensus         6 l~vALD~~~~~~a~~l~~~l-~~~--v~~~kvG~~l~--~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~G   80 (216)
T PRK13306          6 LQIALDNQDLESAIEDAKKV-AEE--VDIIEVGTILL--LAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAG   80 (216)
T ss_pred             EEEEecCCCHHHHHHHHHHc-ccc--CCEEEEChHHH--HHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCC
Confidence            46778999999999998886 454  68877  4444  6789999999999889999999999999999876 788999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP  167 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~  167 (277)
                      +|++|+|.+..+   .                                       .+....+.+++.|++.++.+.+.++
T Consensus        81 ad~vTvH~~a~~---~---------------------------------------~i~~~~~~~~~~g~~~~V~llts~~  118 (216)
T PRK13306         81 ADWVTVICAAHI---P---------------------------------------TIKAALKVAKEFNGEIQIELYGNWT  118 (216)
T ss_pred             CCEEEEeCCCCH---H---------------------------------------HHHHHHHHHHHcCCEEEEEECCCCC
Confidence            999999987644   1                                       3455667777778899999999999


Q ss_pred             HHhHHHHHh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600        168 VDVIAEYIE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       168 ~~~i~~~i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      .+.+...++  ..++++.|+++|++.||.|.+..++++++++.  +++.+.|+|||+.+|++.+.++|+++   |+..|.
T Consensus       119 ~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~--~~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~  196 (216)
T PRK13306        119 WEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD--MGFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRG  196 (216)
T ss_pred             HHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc--CCCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccC
Confidence            998886666  67899999999999999999999999999875  45679999999999999999999996   888887


Q ss_pred             -cCHHHHHHHHHhh
Q psy11600        243 -QDMMPKVKWLREN  255 (277)
Q Consensus       243 -~~~~~kI~~l~~~  255 (277)
                       ++..+.++++++.
T Consensus       197 a~dp~~a~~~i~~~  210 (216)
T PRK13306        197 AADPAAAARAFKDE  210 (216)
T ss_pred             CCCHHHHHHHHHHH
Confidence             5777777777753

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.84  E-value=4.1e-21  Score=169.02  Aligned_cols=194  Identities=18%  Similarity=0.225  Sum_probs=159.5

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeee-ccC-cHHhHHHHHhcC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMM-VQN-PQQWIEPMADAN   87 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlm-v~~-p~~~i~~l~~ag   87 (277)
                      ++++|..++++.++.+++. .+.  +|+..  ..|.  ++||+++++.+|+. +++++|+|+| +.+ +..+++.+.++|
T Consensus         7 ~~alD~~~~~~~~~~~~~~-~~~--~~~vk~g~~l~--~~~G~~~v~~ir~~-~~i~~D~k~~di~~~~~~~~~~~~~~g   80 (215)
T PRK13813          7 ILALDVTDRERALKIAEEL-DDY--VDAIKVGWPLV--LASGLGIIEELKRY-APVIADLKVADIPNTNRLICEAVFEAG   80 (215)
T ss_pred             EEEeCCCCHHHHHHHHHhc-ccc--CCEEEEcHHHH--HhhCHHHHHHHHhc-CCEEEEeeccccHHHHHHHHHHHHhCC
Confidence            4678999999999999876 565  68888  3455  57999999999985 7899999997 554 555569999999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP  167 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~  167 (277)
                      +|++|||+++...                                          ++...++.+++.|++.++++++.+ 
T Consensus        81 ad~vtvh~e~g~~------------------------------------------~l~~~i~~~~~~g~~~~v~~~~~~-  117 (215)
T PRK13813         81 AWGIIVHGFTGRD------------------------------------------SLKAVVEAAAESGGKVFVVVEMSH-  117 (215)
T ss_pred             CCEEEEcCcCCHH------------------------------------------HHHHHHHHHHhcCCeEEEEEeCCC-
Confidence            9999999996430                                          355677888999999999999975 


Q ss_pred             HHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCCCcCc--HHHHHHccCCC---CCccc
Q psy11600        168 VDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNT--IDECAKCLTGF---GGQKF  241 (277)
Q Consensus       168 ~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV~~~t--v~~~~~~gpg~---ggq~F  241 (277)
                      .+.+..+++.++.++.|+++||+.||+|.+..+++|+++++..+. +.+ +||||+..+  ++.+.++|+++   |+..|
T Consensus       118 ~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~  196 (215)
T PRK13813        118 PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIY  196 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence            455556667788889999999999999999889999999887664 567 999999986  99999999996   77888


Q ss_pred             c-cCHHHHHHHHHhh
Q psy11600        242 M-QDMMPKVKWLREN  255 (277)
Q Consensus       242 ~-~~~~~kI~~l~~~  255 (277)
                      . ++..+.++.+++.
T Consensus       197 ~~~d~~~~~~~l~~~  211 (215)
T PRK13813        197 NAADPREAAKAINEE  211 (215)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            6 5788888888764

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.83  E-value=2.3e-19  Score=156.63  Aligned_cols=193  Identities=20%  Similarity=0.260  Sum_probs=162.0

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc-c-ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD-G-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV   88 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD-g-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~   88 (277)
                      +.++|..++++.++.++.. -+  ++|+.+ | ++.  ..+|++.++.+|+.+|+..+.+|+++++|.++ ++.+.++|+
T Consensus         3 ~~alD~~~~~~a~~~~~~l-~~--~v~~iev~~~l~--~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga   77 (206)
T TIGR03128         3 QLALDLLDIEEALELAEKV-AD--YVDIIEIGTPLI--KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA   77 (206)
T ss_pred             EEEecCCCHHHHHHHHHHc-cc--CeeEEEeCCHHH--HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence            4578999999999888876 34  377787 3 343  45899999999998898888899988899998 999999999


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee-CCCCC
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI-KPKTP  167 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i-~p~t~  167 (277)
                      |++++|+++...                                          ++.++++.+++.|++.++++ +|.|+
T Consensus        78 d~i~vh~~~~~~------------------------------------------~~~~~i~~~~~~g~~~~~~~~~~~t~  115 (206)
T TIGR03128        78 DIVTVLGVADDA------------------------------------------TIKGAVKAAKKHGKEVQVDLINVKDK  115 (206)
T ss_pred             CEEEEeccCCHH------------------------------------------HHHHHHHHHHHcCCEEEEEecCCCCh
Confidence            999999986431                                          35678888999999999994 99999


Q ss_pred             HHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-
Q psy11600        168 VDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-  242 (277)
Q Consensus       168 ~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-  242 (277)
                      .+.+.++.+ .+|++   .++||+.+|.+.+..+++++++++..+...++++|||+.+|++++.++|++.   |+..|. 
T Consensus       116 ~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~  192 (206)
T TIGR03128       116 VKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA  192 (206)
T ss_pred             HHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence            888887776 57754   7799999999988889999999998888899999999999999999999995   788887 


Q ss_pred             cCHHHHHHHHHh
Q psy11600        243 QDMMPKVKWLRE  254 (277)
Q Consensus       243 ~~~~~kI~~l~~  254 (277)
                      ++..+.++.+++
T Consensus       193 ~d~~~~~~~l~~  204 (206)
T TIGR03128       193 ADPAEAARQIRK  204 (206)
T ss_pred             CCHHHHHHHHHh
Confidence            467777777775

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=99.80  E-value=1e-18  Score=155.56  Aligned_cols=165  Identities=32%  Similarity=0.535  Sum_probs=130.6

Q ss_pred             CCeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHH
Q psy11600         64 KAFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPM  126 (277)
Q Consensus        64 ~~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~  126 (277)
                      +..+...++..+   +.+.++.+.++|++++  |+|.+|+        |+++++++|+.+..++++      |.+|++.+
T Consensus         7 ~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~i--hld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~   84 (229)
T PLN02334          7 DAIIAPSILSADFANLAEEAKRVLDAGADWL--HVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDF   84 (229)
T ss_pred             CceEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHH
Confidence            345666777655   4457888899999999  8899886        789999999998766443      89999999


Q ss_pred             HhcCCCeEEeecCCCCC--hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHH
Q psy11600        127 ADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVK  204 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~--~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~  204 (277)
                      .++|||++|||.|   .  ...+.+.+++                     +...+..++++++|.|+           .+
T Consensus        85 ~~~gad~v~vH~~---q~~~d~~~~~~~~---------------------i~~~g~~iGls~~~~t~-----------~~  129 (229)
T PLN02334         85 AKAGASIFTFHIE---QASTIHLHRLIQQ---------------------IKSAGMKAGVVLNPGTP-----------VE  129 (229)
T ss_pred             HHcCCCEEEEeec---cccchhHHHHHHH---------------------HHHCCCeEEEEECCCCC-----------HH
Confidence            9999999999998   5  4445555554                     45566778899999886           34


Q ss_pred             HHHhhCCC--ccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        205 WLRENYPT--LNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       205 ~l~~~~~~--~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .++++...  ++....|++.           ||+++|.|.+..+++++++++..++..|+||||||.+|++++.
T Consensus       130 ~~~~~~~~~~~Dyi~~~~v~-----------pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~  192 (229)
T PLN02334        130 AVEPVVEKGLVDMVLVMSVE-----------PGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAA  192 (229)
T ss_pred             HHHHHHhccCCCEEEEEEEe-----------cCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHH
Confidence            44444455  6776655553           9999999999999999999998777789999999999998875

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.80  E-value=5e-18  Score=152.59  Aligned_cols=185  Identities=16%  Similarity=0.184  Sum_probs=148.9

Q ss_pred             eEeeeccccCcc--cHHHHHHHHHHcCCCEEEEeccccccccCCCCCH---------------HHHHHHHhcCCCCeeee
Q psy11600          7 MIGPSILNSDLS--NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH---------------PVVKCLRNKIPKAFFET   69 (277)
Q Consensus         7 ~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~---------------~~v~~l~~~~~~~~~d~   69 (277)
                      .+.|=+.+.|+.  .+.+.++.+++. +|.+=+.+   +|-.-..=|+               ++++++|+. +++|+  
T Consensus         5 ~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgi---p~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~-~~~Pl--   77 (244)
T PRK13125          5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGI---PPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD-VSVPI--   77 (244)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECC---CCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc-CCCCE--
Confidence            356667777544  566677777765 77766655   3321122243               478888864 78887  


Q ss_pred             eee------ccCcHHhHHHHHhcCCCeEEEe---ccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCC
Q psy11600         70 HMM------VQNPQQWIEPMADANVDQYTFH---VEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        70 Hlm------v~~p~~~i~~l~~ag~d~i~~H---~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~  140 (277)
                      |+|      +.+|.++++.+.++|+|.+++|   +|+.+                                         
T Consensus        78 ~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~-----------------------------------------  116 (244)
T PRK13125         78 ILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPD-----------------------------------------  116 (244)
T ss_pred             EEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHH-----------------------------------------
Confidence            787      7899999999999999999999   45433                                         


Q ss_pred             CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCC
Q psy11600        141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGG  220 (277)
Q Consensus       141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGg  220 (277)
                        ...++++.+++.|++.++.++|.||.+.++++++..|.++.|+++|+|+ ++|.+++.+++++++++.++..+++|||
T Consensus       117 --~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gG  193 (244)
T PRK13125        117 --DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGNKYLVVGFG  193 (244)
T ss_pred             --HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence              4567888999999999999999999999999999999999999999995 5899999999999999887778999999


Q ss_pred             C-CcCcHHHHHHccCCC---CCcccc
Q psy11600        221 V-GPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       221 V-~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      | +.++++.+.++|++.   |+..|.
T Consensus       194 I~~~e~i~~~~~~gaD~vvvGSai~~  219 (244)
T PRK13125        194 LDSPEDARDALSAGADGVVVGTAFIE  219 (244)
T ss_pred             cCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            9 999999999999985   666553

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.74  E-value=3.8e-17  Score=141.84  Aligned_cols=188  Identities=18%  Similarity=0.215  Sum_probs=144.4

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEecccc--ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDG--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV   88 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~   88 (277)
                      +++.|..+.++.++.++.. .+.  +|+++.  +|.  .++|++.++.+|+.+|++++++|+|+.++.++ ++.+.++|+
T Consensus         4 ~~a~d~~~~~~~~~~~~~l-~~~--i~~ieig~~~~--~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa   78 (202)
T cd04726           4 QVALDLLDLEEALELAKKV-PDG--VDIIEAGTPLI--KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA   78 (202)
T ss_pred             EEEEcCCCHHHHHHHHHHh-hhc--CCEEEcCCHHH--HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC
Confidence            4567999999888887776 454  777885  454  67899999999997799999999999999877 788999999


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee-eCCCCC
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA-IKPKTP  167 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~-i~p~t~  167 (277)
                      |++++|.+....                                          ...++++.+++.|++.++. ++|.|+
T Consensus        79 d~i~~h~~~~~~------------------------------------------~~~~~i~~~~~~g~~~~v~~~~~~t~  116 (202)
T cd04726          79 DIVTVLGAAPLS------------------------------------------TIKKAVKAAKKYGKEVQVDLIGVEDP  116 (202)
T ss_pred             CEEEEEeeCCHH------------------------------------------HHHHHHHHHHHcCCeEEEEEeCCCCH
Confidence            999999876430                                          3456778888889888886 899999


Q ss_pred             HHhHHHHHhhcCceEEEEecCCCCCchh-hhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccccc
Q psy11600        168 VDVIAEYIESADLVLIMTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFMQ  243 (277)
Q Consensus       168 ~~~i~~~i~~~d~vl~mav~Pgt~gq~~-~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~~  243 (277)
                      .+....+-..+|++.+   .|++.++.+ .+...++++++++. +++.+.++|||+.+|+.++.++|+++   |+..|..
T Consensus       117 ~e~~~~~~~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~  192 (202)
T cd04726         117 EKRAKLLKLGVDIVIL---HRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGA  192 (202)
T ss_pred             HHHHHHHHCCCCEEEE---cCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCC
Confidence            8877633337887554   454444333 45566777777654 57889999999999999999999996   7777764


Q ss_pred             -CHHHHHH
Q psy11600        244 -DMMPKVK  250 (277)
Q Consensus       244 -~~~~kI~  250 (277)
                       +..+.++
T Consensus       193 ~d~~~~~~  200 (202)
T cd04726         193 ADPAEAAR  200 (202)
T ss_pred             CCHHHHHh
Confidence             4444443

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.66  E-value=8.6e-15  Score=132.63  Aligned_cols=191  Identities=18%  Similarity=0.263  Sum_probs=155.5

Q ss_pred             ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEec------cccccc---------cCCCC--CHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLDV------MDGTFV---------PNLTF--GHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~Di------mDg~fv---------p~~~~--g~~~v~~l~~~~~~~~   66 (277)
                      ..+.|=+.+.|+.  ...+.++.+.+.|+|.+=+-+      .||+.+         ..+++  ..+.++++|+..+++|
T Consensus        10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p   89 (256)
T TIGR00262        10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP   89 (256)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            4577888888764  345667788889999988776      555543         11121  3466899997557899


Q ss_pred             eeeeeeccCc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCC
Q psy11600         67 FETHMMVQNP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        67 ~d~Hlmv~~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~  140 (277)
                      ++ |||+.||      +++++.+.++|++.+.+|.++.+                                         
T Consensus        90 lv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~e-----------------------------------------  127 (256)
T TIGR00262        90 IG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLE-----------------------------------------  127 (256)
T ss_pred             EE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChH-----------------------------------------
Confidence            88 9999999      88999999999999999977654                                         


Q ss_pred             CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC-ceEEEEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEE
Q psy11600        141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD-LVLIMTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d-~vl~mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                        ......+.+++.|+..+..++|.|+.+.+..+.+..+ ++.+|+++ |+.||+  |.+++.+++++++++. +..+.+
T Consensus       128 --e~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~v  203 (256)
T TIGR00262       128 --ESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLV  203 (256)
T ss_pred             --HHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEE
Confidence              4567888899999999999999999999999999887 99999998 888886  8899999999999864 457999


Q ss_pred             eCCCC-cCcHHHHHHccCCC---CCcccc
Q psy11600        218 DGGVG-PNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       218 dGgV~-~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      +|||+ .++++.+.++|++.   |+..|.
T Consensus       204 gfGI~~~e~~~~~~~~GADgvVvGSaiv~  232 (256)
T TIGR00262       204 GFGISKPEQVKQAIDAGADGVIVGSAIVK  232 (256)
T ss_pred             eCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            99997 99999999999995   555543

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.58  E-value=7.5e-14  Score=124.58  Aligned_cols=95  Identities=19%  Similarity=0.244  Sum_probs=85.5

Q ss_pred             eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee--eccCcHHhHHHHHhcCC
Q psy11600         11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM--MVQNPQQWIEPMADANV   88 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl--mv~~p~~~i~~l~~ag~   88 (277)
                      =++++|+.+++++++.+++.|.++.|+||||+.|+   +||++++++||+....+++|+|+  |..+|.++++.+.++|+
T Consensus         5 lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~ga   81 (230)
T PRK00230          5 LIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGV   81 (230)
T ss_pred             eEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCC
Confidence            36889999999999999999999999999999998   79999999999854689999999  99999999999999999


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhh
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      |++|||.++   |..++++..+.
T Consensus        82 d~itvH~~a---g~~~i~~~~~~  101 (230)
T PRK00230         82 DMVNVHASG---GPRMMKAAREA  101 (230)
T ss_pred             CEEEEcccC---CHHHHHHHHHH
Confidence            999999864   55677777664

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=99.56  E-value=3.6e-14  Score=121.32  Aligned_cols=187  Identities=15%  Similarity=0.107  Sum_probs=136.6

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .|+||.++  ..++.+.++.+.+.|++++|+|++|+++.++++    .++++++. ++ .+++|+|+.+   +++.+.++
T Consensus         3 ~it~~~~~--~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~----~~~~i~~~-~~-~~~~~l~~~~---~~~~a~~~   71 (196)
T cd00564           3 LITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARELLE----LARALREL-CR-KYGVPLIIND---RVDLALAV   71 (196)
T ss_pred             EEeCCccc--cchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH----HHHHHHHH-HH-HhCCeEEEeC---hHHHHHHc
Confidence            47888776  457889999999999999999999999998864    46777764 33 5789999975   46778889


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|.+  |++..+                                           ......+.++..+.+.|+.  ..+
T Consensus        72 g~~~v--h~~~~~-------------------------------------------~~~~~~~~~~~~~~~~g~~--~~t  104 (196)
T cd00564          72 GADGV--HLGQDD-------------------------------------------LPVAEARALLGPDLIIGVS--THS  104 (196)
T ss_pred             CCCEE--ecCccc-------------------------------------------CCHHHHHHHcCCCCEEEee--CCC
Confidence            99977  877544                                           1222233333334444444  344


Q ss_pred             CHHhHHHHHh-hcCceEEEEecCCCCCchh-hhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccc
Q psy11600        167 PVDVIAEYIE-SADLVLIMTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKF  241 (277)
Q Consensus       167 ~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~-~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F  241 (277)
                      + +.+..+.. .+|++.++.+.|+.+.+.+ .+..+++++++++. .++.+.++||++..|+.++.++|+++   |+..|
T Consensus       105 ~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~  182 (196)
T cd00564         105 L-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAAGADGVAVISAIT  182 (196)
T ss_pred             H-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhh
Confidence            3 44444544 5899999989888776665 56667778877765 56889999999999999999999986   67777


Q ss_pred             c-cCHHHHHHHHH
Q psy11600        242 M-QDMMPKVKWLR  253 (277)
Q Consensus       242 ~-~~~~~kI~~l~  253 (277)
                      . ++..+.+++++
T Consensus       183 ~~~~~~~~~~~l~  195 (196)
T cd00564         183 GADDPAAAARELL  195 (196)
T ss_pred             cCCCHHHHHHHHh
Confidence            6 56777777664

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.54  E-value=2.5e-13  Score=122.07  Aligned_cols=163  Identities=17%  Similarity=0.200  Sum_probs=122.0

Q ss_pred             eeeeeeccCcH-----HhHHHHHhcCCCeEEEecc------CCCC-------------------CHHHHHHHHhhCCCc-
Q psy11600         67 FETHMMVQNPQ-----QWIEPMADANVDQYTFHVE------PVDN-------------------VPQVIRQIKEAGMKV-  115 (277)
Q Consensus        67 ~d~Hlmv~~p~-----~~i~~l~~ag~d~i~~H~e------~~d~-------------------g~~~i~~i~~~~~~~-  115 (277)
                      +-.|++..+|.     ++++.+.++|+|++  |++      .+||                   ++++++++|+.+..| 
T Consensus         2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~i--el~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv   79 (242)
T cd04724           2 LIPYITAGDPDLETTLEILKALVEAGADII--ELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI   79 (242)
T ss_pred             cEEEEeCCCCCHHHHHHHHHHHHHCCCCEE--EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE
Confidence            45788888876     45888999999999  888      6776                   477888998876554 


Q ss_pred             ccc----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE
Q psy11600        116 GQV----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT  185 (277)
Q Consensus       116 ~d~----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma  185 (277)
                      +.|    |      ++|++.++++|++.+++|-.   ..++..+++                     +.++..++..++.
T Consensus        80 ~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl---~~ee~~~~~---------------------~~~~~~g~~~i~~  135 (242)
T cd04724          80 VLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL---PPEEAEEFR---------------------EAAKEYGLDLIFL  135 (242)
T ss_pred             EEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC---CHHHHHHHH---------------------HHHHHcCCcEEEE
Confidence            433    4      88999999999999999976   655443333                     4567778888899


Q ss_pred             ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcc-cccCHHHHHHHHHhhCCCCeEEEe
Q psy11600        186 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQK-FMQDMMPKVKWLRENYPTLNIEVD  264 (277)
Q Consensus       186 v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~-F~~~~~~kI~~l~~~~~~~~I~VD  264 (277)
                      ++|.|+.        ++++.+.+...  +...     .+|+      .|++|+|. |.++..++|+++|+. .++.|.||
T Consensus       136 i~P~T~~--------~~i~~i~~~~~--~~vy-----~~s~------~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vg  193 (242)
T cd04724         136 VAPTTPD--------ERIKKIAELAS--GFIY-----YVSR------TGVTGARTELPDDLKELIKRIRKY-TDLPIAVG  193 (242)
T ss_pred             eCCCCCH--------HHHHHHHhhCC--CCEE-----EEeC------CCCCCCccCCChhHHHHHHHHHhc-CCCcEEEE
Confidence            9999972        34555544222  2222     2333      59999988 888999999999986 47889999


Q ss_pred             CCCCc-cCHHHhhC
Q psy11600        265 GGVGP-NTIDECAK  277 (277)
Q Consensus       265 GGI~~-~~~~~~~~  277 (277)
                      ||||. ++++++.+
T Consensus       194 gGI~~~e~~~~~~~  207 (242)
T cd04724         194 FGISTPEQAAEVAK  207 (242)
T ss_pred             ccCCCHHHHHHHHc
Confidence            99995 58888753

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=99.52  E-value=2.3e-13  Score=118.54  Aligned_cols=160  Identities=25%  Similarity=0.388  Sum_probs=113.8

Q ss_pred             eeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcc--cc----hhhhhHHHHhcCC
Q psy11600         69 THMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVG--QV----LQDWIEPMADANV  131 (277)
Q Consensus        69 ~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~--d~----p~~~i~~~~~~g~  131 (277)
                      +.++..|+.   +.++.+.++|+|++  |++++||        +++.++++|+.+..++  ++    +.+|++.+.++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~d~i--~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~ga   80 (210)
T TIGR01163         3 PSILSADFARLGEEVKAVEEAGADWI--HVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGA   80 (210)
T ss_pred             chhhcCCHHHHHHHHHHHHHcCCCEE--EEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCC
Confidence            445666644   56888899999999  7776665        8999999998765553  22    8899999999999


Q ss_pred             CeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC
Q psy11600        132 DQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP  211 (277)
Q Consensus       132 d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~  211 (277)
                      |.+++|.+   ......+.++.                     ++..+...+++++|.++           .+.++++..
T Consensus        81 dgv~vh~~---~~~~~~~~~~~---------------------~~~~g~~~~~~~~~~t~-----------~e~~~~~~~  125 (210)
T TIGR01163        81 DIITVHPE---ASEHIHRLLQL---------------------IKDLGAKAGIVLNPATP-----------LEFLEYVLP  125 (210)
T ss_pred             CEEEEccC---CchhHHHHHHH---------------------HHHcCCcEEEEECCCCC-----------HHHHHHHHh
Confidence            99999998   76655555443                     34445555677788765           233333322


Q ss_pred             CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600        212 TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       212 ~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ..+...-+++           .||.+|+.|.+..++++++++++.    +.+.|.++||||++|++++.
T Consensus       126 ~~d~i~~~~~-----------~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~  183 (210)
T TIGR01163       126 DVDLVLLMSV-----------NPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELA  183 (210)
T ss_pred             hCCEEEEEEE-----------cCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHH
Confidence            3344332333           378888889888889988887643    34679999999999998864

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=99.50  E-value=4.6e-13  Score=129.61  Aligned_cols=190  Identities=22%  Similarity=0.302  Sum_probs=147.3

Q ss_pred             ccccCcccHHHHHHHHHH---cCCCEEEEeccccccccCC-CCCHHHHHHHHhcCC--CCeeeeeeeccCcHHhHHHHHh
Q psy11600         12 ILNSDLSNLHSESQNLLD---SGADYLHLDVMDGTFVPNL-TFGHPVVKCLRNKIP--KAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~---~~~~~~h~DimDg~fvp~~-~~g~~~v~~l~~~~~--~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++++|+.++++.++.+++   .|++++|+.     + |+. .++.+.++++++.++  .+..|+|+|.. |..+++.+.+
T Consensus         7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g-----~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~   79 (430)
T PRK07028          7 QVALDLLELDRAVEIAKEAVAGGADWIEAG-----T-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAK   79 (430)
T ss_pred             EEEeccCCHHHHHHHHHHHHhcCCcEEEeC-----C-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHH
Confidence            468999999999998888   899999873     2 444 679999999998765  46779999998 9999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee-eCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA-IKP  164 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~-i~p  164 (277)
                      +|+|.+|+|.+..+.                                          +....++.+++.|+..+++ +++
T Consensus        80 aGAdgV~v~g~~~~~------------------------------------------~~~~~i~~a~~~G~~~~~g~~s~  117 (430)
T PRK07028         80 AGADIVCILGLADDS------------------------------------------TIEDAVRAARKYGVRLMADLINV  117 (430)
T ss_pred             cCCCEEEEecCCChH------------------------------------------HHHHHHHHHHHcCCEEEEEecCC
Confidence            999999888653320                                          2345667778888888875 677


Q ss_pred             CCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600        165 KTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       165 ~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~  240 (277)
                      .++++.+..+.+. +|++   .+.||+++|.+....++.++++++..+ +.+.++|||+.+++.++.++|++.   |+..
T Consensus       118 ~t~~e~~~~a~~~GaD~I---~~~pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI  193 (430)
T PRK07028        118 PDPVKRAVELEELGVDYI---NVHVGIDQQMLGKDPLELLKEVSEEVS-IPIAVAGGLDAETAAKAVAAGADIVIVGGNI  193 (430)
T ss_pred             CCHHHHHHHHHhcCCCEE---EEEeccchhhcCCChHHHHHHHHhhCC-CcEEEECCCCHHHHHHHHHcCCCEEEEChHH
Confidence            8888777666654 7776   456888777666555677777766433 789999999999999999999995   7777


Q ss_pred             ccc-CHHHHHHHHHh
Q psy11600        241 FMQ-DMMPKVKWLRE  254 (277)
Q Consensus       241 F~~-~~~~kI~~l~~  254 (277)
                      |.. +..+.++.+++
T Consensus       194 ~~~~d~~~~~~~l~~  208 (430)
T PRK07028        194 IKSADVTEAARKIRE  208 (430)
T ss_pred             cCCCCHHHHHHHHHH
Confidence            763 56666666665

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=99.50  E-value=5.7e-13  Score=117.07  Aligned_cols=163  Identities=27%  Similarity=0.447  Sum_probs=117.9

Q ss_pred             eeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCccc---c---hhhhhHHHHh
Q psy11600         66 FFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQ---V---LQDWIEPMAD  128 (277)
Q Consensus        66 ~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d---~---p~~~i~~~~~  128 (277)
                      .+.+.++..|+..   .++.+.++|++++  |++.+|+        +.+.++++++.+..+.+   +   |.+|++.+.+
T Consensus         5 ~~~~s~~~~~~~~~~~~~~~~~~~G~~~i--~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~   82 (220)
T PRK05581          5 LIAPSILSADFARLGEEVKAVEAAGADWI--HVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK   82 (220)
T ss_pred             EEEcchhcCCHHHHHHHHHHHHHcCCCEE--EEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH
Confidence            3677888888655   4778888999999  7777665        68889999987643322   2   7889999999


Q ss_pred             cCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600        129 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE  208 (277)
Q Consensus       129 ~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~  208 (277)
                      +|+|.+++|.+   ......+.++                     .++..+..++++++|.++           .+.++.
T Consensus        83 ~g~d~v~vh~~---~~~~~~~~~~---------------------~~~~~~~~~g~~~~~~t~-----------~e~~~~  127 (220)
T PRK05581         83 AGADIITFHVE---ASEHIHRLLQ---------------------LIKSAGIKAGLVLNPATP-----------LEPLED  127 (220)
T ss_pred             cCCCEEEEeec---cchhHHHHHH---------------------HHHHcCCEEEEEECCCCC-----------HHHHHH
Confidence            99999999998   6555544443                     455667777788888765           222333


Q ss_pred             hCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhh
Q psy11600        209 NYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~  276 (277)
                      +....+...-|++           .||.+|+.|.+..+++++++++..+    ...|.+|||||++|++++.
T Consensus       128 ~~~~~d~i~~~~~-----------~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~  188 (220)
T PRK05581        128 VLDLLDLVLLMSV-----------NPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECA  188 (220)
T ss_pred             HHhhCCEEEEEEE-----------CCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHH
Confidence            3223343332333           3788889999989999998887543    2668999999999998875

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.49  E-value=3.8e-13  Score=117.34  Aligned_cols=193  Identities=15%  Similarity=0.122  Sum_probs=130.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ..|+||.++.+ .++.+.++.+.+.|++++|+|++|....+.+    ..++.+++. . ...++|+|+.   ++++.+.+
T Consensus        10 ~~it~~~~~~~-~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~----~~~~~~~~~-~-~~~~~~l~~~---~~~~~a~~   79 (212)
T PRK00043         10 YLITDSRDDSG-RDLLEVVEAALEGGVTLVQLREKGLDTRERL----ELARALKEL-C-RRYGVPLIVN---DRVDLALA   79 (212)
T ss_pred             EEEECCccccc-ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHH----HHHHHHHHH-H-HHhCCeEEEe---ChHHHHHH
Confidence            34889988655 6788999999999999999999995433221    123333322 1 1467888885   56788889


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+|.+|+|.+  +                                           ......+.++..+.+.|  +...
T Consensus        80 ~gad~vh~~~~--~-------------------------------------------~~~~~~~~~~~~~~~~g--~~~~  112 (212)
T PRK00043         80 VGADGVHLGQD--D-------------------------------------------LPVADARALLGPDAIIG--LSTH  112 (212)
T ss_pred             cCCCEEecCcc--c-------------------------------------------CCHHHHHHHcCCCCEEE--EeCC
Confidence            99999855443  3                                           11122233333343334  3344


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhh-hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccc
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDM-MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKF  241 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~-l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F  241 (277)
                      |+.+..+.+...+|++.+..+.|+...+...... +++++++++..+++.+.++|||+.+|+..+.++|+++   |+..|
T Consensus       113 t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~  192 (212)
T PRK00043        113 TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAIT  192 (212)
T ss_pred             CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhh
Confidence            5444444455678888877778876544443333 6788888877767999999999999999999999996   66666


Q ss_pred             c-cCHHHHHHHHHhh
Q psy11600        242 M-QDMMPKVKWLREN  255 (277)
Q Consensus       242 ~-~~~~~kI~~l~~~  255 (277)
                      . ++..+.++++++.
T Consensus       193 ~~~d~~~~~~~l~~~  207 (212)
T PRK00043        193 GAEDPEAAARALLAA  207 (212)
T ss_pred             cCCCHHHHHHHHHHH
Confidence            5 5677777777653

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2e-12  Score=112.97  Aligned_cols=190  Identities=21%  Similarity=0.262  Sum_probs=141.7

Q ss_pred             cccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCCC
Q psy11600         13 LNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANVD   89 (277)
Q Consensus        13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~d   89 (277)
                      ++.|..+|++.++.+++. .++  +||.+  ++.+  .++|.+.|+.||+.||+.++.++++++|-+.+ .+...++|+|
T Consensus         8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvGTpLi--k~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd   82 (217)
T COG0269           8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVGTPLI--KAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD   82 (217)
T ss_pred             eeecccCHHHHHHHHHHh-hhc--ceEEEeCcHHH--HHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCC
Confidence            468999999999999987 777  99999  5566  45999999999999999999999999999986 8888999999


Q ss_pred             eEEEeccCCCC-CHHHHHHHHhhCCC-cccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee
Q psy11600         90 QYTFHVEPVDN-VPQVIRQIKEAGMK-VGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI  162 (277)
Q Consensus        90 ~i~~H~e~~d~-g~~~i~~i~~~~~~-~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i  162 (277)
                      |+|+-.-+.+. -...++..++.+.. .+|+     |++..+++.++|+|++.+|..    ...     +..|      .
T Consensus        83 ~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g----~D~-----q~~G------~  147 (217)
T COG0269          83 WVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRG----RDA-----QAAG------K  147 (217)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEec----ccH-----hhcC------C
Confidence            99987544331 33445555566644 4555     788888898999999999974    211     1111      1


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                                              +|+       .+.+++++++.+  +.+.+.|.||+++++++.+...||..   |+.
T Consensus       148 ------------------------~~~-------~~~l~~ik~~~~--~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGra  194 (217)
T COG0269         148 ------------------------SWG-------EDDLEKIKKLSD--LGAKVAVAGGITPEDIPLFKGIGADIVIVGRA  194 (217)
T ss_pred             ------------------------Ccc-------HHHHHHHHHhhc--cCceEEEecCCCHHHHHHHhcCCCCEEEECch
Confidence                                    222       122334444432  23889999999999999999999995   666


Q ss_pred             ccc-cCHHHHHHHHHhh
Q psy11600        240 KFM-QDMMPKVKWLREN  255 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~~  255 (277)
                      .-. .+..+..+++++.
T Consensus       195 It~a~dp~~~a~~~~~~  211 (217)
T COG0269         195 ITGAKDPAEAARKFKEE  211 (217)
T ss_pred             hcCCCCHHHHHHHHHHH
Confidence            665 4667777777654

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.44  E-value=3.5e-12  Score=114.70  Aligned_cols=163  Identities=14%  Similarity=0.206  Sum_probs=114.9

Q ss_pred             eeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cCC-CC--------------CHHHHHHHHhhCCCccc-----
Q psy11600         66 FFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EPV-DN--------------VPQVIRQIKEAGMKVGQ-----  117 (277)
Q Consensus        66 ~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~~-d~--------------g~~~i~~i~~~~~~~~d-----  117 (277)
                      .+-.+++..+|..     .++.+.++ +|.+-+-+   |+. ||              .+++++++|+.+..|+.     
T Consensus         5 ~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~   83 (244)
T PRK13125          5 GLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYL   83 (244)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEec
Confidence            3677888887544     35556666 88875443   221 33              12588999987766642     


Q ss_pred             -----chhhhhHHHHhcCCCeEEee---cCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCC
Q psy11600        118 -----VLQDWIEPMADANVDQYTFH---VEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPG  189 (277)
Q Consensus       118 -----~p~~~i~~~~~~g~d~it~H---~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pg  189 (277)
                           -|++|++.+.++|+|.+++|   +|   +..+..++++                     .++..++..+++++|.
T Consensus        84 n~~~~~~~~~i~~~~~~Gadgvii~dlp~e---~~~~~~~~~~---------------------~~~~~Gl~~~~~v~p~  139 (244)
T PRK13125         84 EDYVDSLDNFLNMARDVGADGVLFPDLLID---YPDDLEKYVE---------------------IIKNKGLKPVFFTSPK  139 (244)
T ss_pred             chhhhCHHHHHHHHHHcCCCEEEECCCCCC---cHHHHHHHHH---------------------HHHHcCCCEEEEECCC
Confidence                 18999999999999999999   56   6666555554                     4567777778999999


Q ss_pred             CCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCC-C
Q psy11600        190 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-G  268 (277)
Q Consensus       190 t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI-~  268 (277)
                      |+.        +.++.+.+..+.+   +-+|+           +||+|+ .|.++..++++++|+..++..|+||||| |
T Consensus       140 T~~--------e~l~~~~~~~~~~---l~msv-----------~~~~g~-~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~  196 (244)
T PRK13125        140 FPD--------LLIHRLSKLSPLF---IYYGL-----------RPATGV-PLPVSVERNIKRVRNLVGNKYLVVGFGLDS  196 (244)
T ss_pred             CCH--------HHHHHHHHhCCCE---EEEEe-----------CCCCCC-CchHHHHHHHHHHHHhcCCCCEEEeCCcCC
Confidence            972        2344433333322   22233           489865 7999999999999998766679999999 8


Q ss_pred             ccCHHHhh
Q psy11600        269 PNTIDECA  276 (277)
Q Consensus       269 ~~~~~~~~  276 (277)
                      +++++++.
T Consensus       197 ~e~i~~~~  204 (244)
T PRK13125        197 PEDARDAL  204 (244)
T ss_pred             HHHHHHHH
Confidence            99998864

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=99.36  E-value=2.1e-11  Score=105.99  Aligned_cols=161  Identities=27%  Similarity=0.426  Sum_probs=111.2

Q ss_pred             eeeeeccCcHH---hHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCccc--c----hhhhhHHHHhcC
Q psy11600         68 ETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQ--V----LQDWIEPMADAN  130 (277)
Q Consensus        68 d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d--~----p~~~i~~~~~~g  130 (277)
                      ++.++..|+.+   .++.+.++|++++  |++.+|+        +++.++++++.+..+.+  +    |.++++.+.++|
T Consensus         3 ~~~~~~~d~~~~~~~~~~~~~~G~~~i--~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g   80 (211)
T cd00429           3 APSILSADFANLGEELKRLEEAGADWI--HIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG   80 (211)
T ss_pred             eeeeecCCHHHHHHHHHHHHHcCCCEE--EEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcC
Confidence            44455555444   5888888999999  6655553        57899999987633332  2    678999999999


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC
Q psy11600        131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY  210 (277)
Q Consensus       131 ~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~  210 (277)
                      +|.+++|.+   ......+.++                     .++..+..+++++.|.++.        +.++.+   .
T Consensus        81 ~dgv~vh~~---~~~~~~~~~~---------------------~~~~~~~~~g~~~~~~~~~--------~~~~~~---~  125 (211)
T cd00429          81 ADIITFHAE---ATDHLHRTIQ---------------------LIKELGMKAGVALNPGTPV--------EVLEPY---L  125 (211)
T ss_pred             CCEEEECcc---chhhHHHHHH---------------------HHHHCCCeEEEEecCCCCH--------HHHHHH---H
Confidence            999999998   6544444443                     3455677777888876641        122222   2


Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhh
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~  276 (277)
                      ...+...-|++.           ||.+|+.|.+...++++++++..+    +..+.++||||++|++++.
T Consensus       126 ~~~d~i~~~~~~-----------~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~  184 (211)
T cd00429         126 DEVDLVLVMSVN-----------PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLA  184 (211)
T ss_pred             hhCCEEEEEEEC-----------CCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence            223444434443           677778888888888888887543    4779999999999998875

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.34  E-value=2.4e-11  Score=106.85  Aligned_cols=158  Identities=13%  Similarity=0.120  Sum_probs=108.9

Q ss_pred             eeccCcHHhHHHHHhcC--CCeEEEeccC-CCCCHHHHHHHHhhCCCcc-----cc---hhhhhHHHHhcCCCeEEeecC
Q psy11600         71 MMVQNPQQWIEPMADAN--VDQYTFHVEP-VDNVPQVIRQIKEAGMKVG-----QV---LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        71 lmv~~p~~~i~~l~~ag--~d~i~~H~e~-~d~g~~~i~~i~~~~~~~~-----d~---p~~~i~~~~~~g~d~it~H~E  139 (277)
                      |=+.+.++-++.+.+.+  .+++-++... .++|+++++++|+.+..+.     |+   +..+++.++++|||++|||+|
T Consensus        10 lD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e   89 (215)
T PRK13813         10 LDVTDRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGF   89 (215)
T ss_pred             eCCCCHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCc
Confidence            33445555555554442  3455555443 3569999999999885553     33   566779999999999999999


Q ss_pred             CCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEe
Q psy11600        140 PVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVD  218 (277)
Q Consensus       140 ~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vd  218 (277)
                         ...+ +.+.+                     +++++.++.++++++|.+.  ...+.+.+.++.+.           
T Consensus        90 ---~g~~~l~~~i---------------------~~~~~~g~~~~v~~~~~~~--~~~~~~~~~~~~v~-----------  132 (215)
T PRK13813         90 ---TGRDSLKAVV---------------------EAAAESGGKVFVVVEMSHP--GALEFIQPHADKLA-----------  132 (215)
T ss_pred             ---CCHHHHHHHH---------------------HHHHhcCCeEEEEEeCCCC--CCCCCHHHHHHHHH-----------
Confidence               6543 32333                     3556677788888899753  23344444455442           


Q ss_pred             CCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCC-CeEEEeCCCCccC--HHHhh
Q psy11600        219 GGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNT--IDECA  276 (277)
Q Consensus       219 GgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~-~~I~VDGGI~~~~--~~~~~  276 (277)
                          .|++      .||++||.|.+...+||+++|+..+. +.| |||||+.++  ++.+.
T Consensus       133 ----~m~~------e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~  182 (215)
T PRK13813        133 ----KLAQ------EAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAI  182 (215)
T ss_pred             ----HHHH------HhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHH
Confidence                3444      59999999999889999999987654 678 999999985  76654

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.26  E-value=7.3e-11  Score=102.94  Aligned_cols=148  Identities=15%  Similarity=0.130  Sum_probs=102.4

Q ss_pred             HHHHHhcCCCeEEEecc-CCCCCHHHHHHHHhh-CCC--cccc----hhhh-hHHHHhcCCCeEEeecCCCCChH-HHHH
Q psy11600         80 IEPMADANVDQYTFHVE-PVDNVPQVIRQIKEA-GMK--VGQV----LQDW-IEPMADANVDQYTFHVEPVDNVP-QVIR  149 (277)
Q Consensus        80 i~~l~~ag~d~i~~H~e-~~d~g~~~i~~i~~~-~~~--~~d~----p~~~-i~~~~~~g~d~it~H~E~~~~~~-~~~~  149 (277)
                      ++.+ +.|++++-+=.. ...+|++.|+.+|+. +..  ..|.    |..| ++.++++|||+|++|.|   +.. .+.+
T Consensus        18 ~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~---~~~~~~~~   93 (206)
T TIGR03128        18 AEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV---ADDATIKG   93 (206)
T ss_pred             HHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc---CCHHHHHH
Confidence            4444 556676633101 123489999999987 332  2232    7777 99999999999999999   653 2333


Q ss_pred             HHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe-cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHH
Q psy11600        150 QIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV-EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE  228 (277)
Q Consensus       150 ~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav-~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~  228 (277)
                      .+                     +++++.++.++..+ +|.++        .+.+....+.  +.++.        +   
T Consensus        94 ~i---------------------~~~~~~g~~~~~~~~~~~t~--------~~~~~~~~~~--g~d~v--------~---  131 (206)
T TIGR03128        94 AV---------------------KAAKKHGKEVQVDLINVKDK--------VKRAKELKEL--GADYI--------G---  131 (206)
T ss_pred             HH---------------------HHHHHcCCEEEEEecCCCCh--------HHHHHHHHHc--CCCEE--------E---
Confidence            33                     35666777777774 88774        2233333322  34433        1   


Q ss_pred             HHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        229 CAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       229 ~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                         ..|||++|.|.+...++++++++..+...|+||||||.+|++++.
T Consensus       132 ---~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~  176 (206)
T TIGR03128       132 ---VHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVI  176 (206)
T ss_pred             ---EcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHH
Confidence               259999999999889999999998878889999999999998775

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.23  E-value=7.7e-10  Score=100.35  Aligned_cols=166  Identities=14%  Similarity=0.213  Sum_probs=119.9

Q ss_pred             CCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhh-CCC
Q psy11600         64 KAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEA-GMK  114 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~-~~~  114 (277)
                      +.-+-.+++..+|..     .++.+.++|+|++-+-+   |+ .||                   ...+++++|+. +..
T Consensus         9 ~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~   88 (256)
T TIGR00262         9 EGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI   88 (256)
T ss_pred             CceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence            456889999999865     37778899999995543   22 233                   34558888876 455


Q ss_pred             cccc-----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEE
Q psy11600        115 VGQV-----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI  183 (277)
Q Consensus       115 ~~d~-----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~  183 (277)
                      |+..     |      ++|++.++++|++.+++|-+   ..++..++++                     .++..++-++
T Consensus        89 plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl---p~ee~~~~~~---------------------~~~~~gl~~i  144 (256)
T TIGR00262        89 PIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL---PLEESGDLVE---------------------AAKKHGVKPI  144 (256)
T ss_pred             CEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC---ChHHHHHHHH---------------------HHHHCCCcEE
Confidence            5332     6      89999999999999999988   7665544443                     4566777777


Q ss_pred             EEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcc--cccCHHHHHHHHHhhCCCCeE
Q psy11600        184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQK--FMQDMMPKVKWLRENYPTLNI  261 (277)
Q Consensus       184 mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~--F~~~~~~kI~~l~~~~~~~~I  261 (277)
                      ..++|.|+        .++++.+.+..+.+..       .+|+       -|+.||.  |.++..++++++|+.. +..|
T Consensus       145 ~lv~P~T~--------~eri~~i~~~~~gfiy-------~vs~-------~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi  201 (256)
T TIGR00262       145 FLVAPNAD--------DERLKQIAEKSQGFVY-------LVSR-------AGVTGARNRAASALNELVKRLKAYS-AKPV  201 (256)
T ss_pred             EEECCCCC--------HHHHHHHHHhCCCCEE-------EEEC-------CCCCCCcccCChhHHHHHHHHHhhc-CCCE
Confidence            89999997        3455555554443333       3443       3777765  8889999999999875 3469


Q ss_pred             EEeCCCC-ccCHHHhh
Q psy11600        262 EVDGGVG-PNTIDECA  276 (277)
Q Consensus       262 ~VDGGI~-~~~~~~~~  276 (277)
                      .|||||+ +++++++.
T Consensus       202 ~vgfGI~~~e~~~~~~  217 (256)
T TIGR00262       202 LVGFGISKPEQVKQAI  217 (256)
T ss_pred             EEeCCCCCHHHHHHHH
Confidence            9999998 89998875

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.22  E-value=9.3e-11  Score=103.79  Aligned_cols=132  Identities=12%  Similarity=0.095  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHhh-CCCcc--cc----hhhhhH-HHHhcCCCeEEeecCCCCChHHHHH-HHHHhCCccceeeCCCCCHH
Q psy11600         99 DNVPQVIRQIKEA-GMKVG--QV----LQDWIE-PMADANVDQYTFHVEPVDNVPQVIR-QIKEAGMKVGLAIKPKTPVD  169 (277)
Q Consensus        99 d~g~~~i~~i~~~-~~~~~--d~----p~~~i~-~~~~~g~d~it~H~E~~~~~~~~~~-~I~~~g~~~g~~i~p~t~~~  169 (277)
                      .+|+.+|+.+|+. +..++  |.    +.+|+. .++++|+|++|+|.+   ...+.++ .++.                
T Consensus        41 ~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~---a~~~~i~~~~~~----------------  101 (216)
T PRK13306         41 AEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICA---AHIPTIKAALKV----------------  101 (216)
T ss_pred             HhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCC---CCHHHHHHHHHH----------------
Confidence            3499999999998 33333  22    335554 899999999999998   6655333 3332                


Q ss_pred             hHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHH
Q psy11600        170 VIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKV  249 (277)
Q Consensus       170 ~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI  249 (277)
                           ++..+.+++++++|.++.        +.++.+.+ ..-.++++     .+++      .|+++||.|.+..+++|
T Consensus       102 -----~~~~g~~~~V~llts~~~--------~~l~~~~~-~~~~~~vl-----~~a~------~~~~~G~v~s~~~~~~i  156 (216)
T PRK13306        102 -----AKEFNGEIQIELYGNWTW--------EQAQQWRD-AGISQVIY-----HRSR------DAQLAGVAWGEKDLNKV  156 (216)
T ss_pred             -----HHHcCCEEEEEECCCCCH--------HHHHHHHc-CChhhhhh-----hhhh------hhhhcCCCCCHHHHHHH
Confidence                 334466888999998852        22222211 01122322     2333      48899999999999999


Q ss_pred             HHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        250 KWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       250 ~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      |++++.  .+.|.|||||+++|++.++
T Consensus       157 r~~~~~--~~~i~V~gGI~~~~~~~~~  181 (216)
T PRK13306        157 KKLSDM--GFKVSVTGGLVVEDLKLFK  181 (216)
T ss_pred             HHHhcC--CCeEEEcCCCCHhhHHHHh
Confidence            998763  5679999999999987754

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=99.21  E-value=8.3e-10  Score=100.48  Aligned_cols=171  Identities=12%  Similarity=0.199  Sum_probs=134.7

Q ss_pred             CCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhhCCCc
Q psy11600         64 KAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEAGMKV  115 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~~~~~  115 (277)
                      +.-+-.+++..+|..     .++.+.++|+|.+-+-+   |+ .||                   ...+++.+|+....|
T Consensus        14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p   93 (263)
T CHL00200         14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP   93 (263)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence            446899999999865     37778899999995543   22 244                   356666676544444


Q ss_pred             -ccc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC-ceEE
Q psy11600        116 -GQV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD-LVLI  183 (277)
Q Consensus       116 -~d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d-~vl~  183 (277)
                       +.|          .++|++.++++|+|.+.+|-+|-+...+..+.+++.|+....-+.|.|+.+.+..+.+..+ ++..
T Consensus        94 ~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~  173 (263)
T CHL00200         94 IVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL  173 (263)
T ss_pred             EEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence             333          5889999999999999999986555667788889999999999999999999999999887 9999


Q ss_pred             EEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        184 MTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       184 mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      |+ +||+.|++  +.+.+.+.++.+++ .-+.-+.|++||+ .++++.+.++|+|.
T Consensus       174 vS-~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADG  227 (263)
T CHL00200        174 VS-TTGVTGLKTELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNING  227 (263)
T ss_pred             Ec-CCCCCCCCccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCE
Confidence            99 89998884  44555666667766 3467899999999 89999999999984

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.17  E-value=4.2e-10  Score=107.44  Aligned_cols=153  Identities=14%  Similarity=0.075  Sum_probs=104.7

Q ss_pred             eeeccCcHHhHHHHHhcC---CCeEEEeccCC-----CCCHHHHHHHHhh-CCCccc--c----hhhh-hHHHHhcCCCe
Q psy11600         70 HMMVQNPQQWIEPMADAN---VDQYTFHVEPV-----DNVPQVIRQIKEA-GMKVGQ--V----LQDW-IEPMADANVDQ  133 (277)
Q Consensus        70 Hlmv~~p~~~i~~l~~ag---~d~i~~H~e~~-----d~g~~~i~~i~~~-~~~~~d--~----p~~~-i~~~~~~g~d~  133 (277)
                      =|=+.++++.++.+.+.+   .+|    +++.     .+|+.+|+++|+. +..+++  +    |.+| ++.++++|+|+
T Consensus       178 ALD~~~~~~A~~i~~~l~~~~~~~----iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~  253 (391)
T PRK13307        178 ALDLPDLEEVERVLSQLPKSDHII----IEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA  253 (391)
T ss_pred             ecCCCCHHHHHHHHHhcccccceE----EEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence            344455666666555553   233    3442     3599999999998 443333  2    6677 88999999999


Q ss_pred             EEeecCCCCChH-HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE-EecCCCCCchhhhhhhhhHHHHHhhCC
Q psy11600        134 YTFHVEPVDNVP-QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM-TVEPGFGGQKFMQDMMPKVKWLRENYP  211 (277)
Q Consensus       134 it~H~E~~~~~~-~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m-av~Pgt~gq~~~~~~l~kI~~l~~~~~  211 (277)
                      +|||.|   ... .+.+.++                     .+++.+...++ ++||.++           ++.++++..
T Consensus       254 vTVH~e---a~~~ti~~ai~---------------------~akk~GikvgVD~lnp~tp-----------~e~i~~l~~  298 (391)
T PRK13307        254 VVISGL---APISTIEKAIH---------------------EAQKTGIYSILDMLNVEDP-----------VKLLESLKV  298 (391)
T ss_pred             EEEecc---CCHHHHHHHHH---------------------HHHHcCCEEEEEEcCCCCH-----------HHHHHHhhC
Confidence            999999   655 3444444                     35666777778 8899876           344454455


Q ss_pred             CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        212 TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       212 ~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .+++...     +|.     .+|+  ++   +...++|+++|+..+++.|+||||||.+|+++++
T Consensus       299 ~vD~Vll-----ht~-----vdp~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~  348 (391)
T PRK13307        299 KPDVVEL-----HRG-----IDEE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEAL  348 (391)
T ss_pred             CCCEEEE-----ccc-----cCCC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHH
Confidence            6677653     331     1355  33   4567899999988777889999999999998875

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.04  E-value=5.7e-09  Score=90.45  Aligned_cols=147  Identities=15%  Similarity=0.065  Sum_probs=97.1

Q ss_pred             hHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhh-CCCcccc------hhh-hhHHHHhcCCCeEEeecCCCCChHH-HH
Q psy11600         79 WIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEA-GMKVGQV------LQD-WIEPMADANVDQYTFHVEPVDNVPQ-VI  148 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~-~~~~~d~------p~~-~i~~~~~~g~d~it~H~E~~~~~~~-~~  148 (277)
                      .++.+.+. ++++-+.... ..+|++.++++|+. +..+++.      |.+ +++.++++|+|++++|.|   +..+ ..
T Consensus        18 ~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~---~~~~~~~   93 (202)
T cd04726          18 LAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA---APLSTIK   93 (202)
T ss_pred             HHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee---CCHHHHH
Confidence            46666665 7877553222 34589999999987 4444432      443 479999999999999999   5442 33


Q ss_pred             HHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE-ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHH
Q psy11600        149 RQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT-VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID  227 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~  227 (277)
                      +.+                     ++++..++.++++ ++|.|+.           +.++.+....++..-         
T Consensus        94 ~~i---------------------~~~~~~g~~~~v~~~~~~t~~-----------e~~~~~~~~~d~v~~---------  132 (202)
T cd04726          94 KAV---------------------KAAKKYGKEVQVDLIGVEDPE-----------KRAKLLKLGVDIVIL---------  132 (202)
T ss_pred             HHH---------------------HHHHHcCCeEEEEEeCCCCHH-----------HHHHHHHCCCCEEEE---------
Confidence            333                     3456667777775 7898862           111112224454431         


Q ss_pred             HHHHccCCCCCccc-ccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        228 ECAKCLTGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       228 ~~~~~gpg~ggq~F-~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                           +|++.++.+ .+...++++++++. ++..|.+|||||++|++++.
T Consensus       133 -----~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~  176 (202)
T cd04726         133 -----HRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFK  176 (202)
T ss_pred             -----cCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHH
Confidence                 355545554 46678888888875 56889999999999998875

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=98.90  E-value=1.8e-08  Score=88.87  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=72.5

Q ss_pred             ccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--eeeccCcHHhHHHHHh
Q psy11600         12 ILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--HMMVQNPQQWIEPMAD   85 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--Hlmv~~p~~~i~~l~~   85 (277)
                      |+|+|+.+++++++.+++.+  +++  +|+|+++       +||++.+++||+..+.+.+|+  |-+-.....+++.+.+
T Consensus         2 ivAlD~~~~~~a~~~~~~~~~~v~~iKig~~l~~-------~~G~~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~   74 (213)
T TIGR01740         2 IVALDVTTKDEALDLADSLGPEIEVIKVGIDLLL-------DGGDKIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIK   74 (213)
T ss_pred             EEECCCCCHHHHHHHHHhcCCcCcEEEECHHHHH-------hcCHHHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHh
Confidence            57899999999999999998  778  8888888       689999999998755566777  7777777788898999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      +|+|++|+|...   |+..++...+
T Consensus        75 ~gad~vTvh~~~---g~~~l~~~~~   96 (213)
T TIGR01740        75 QGADMVNVHGVA---GSESVEAAKE   96 (213)
T ss_pred             cCCCEEEEcCCC---CHHHHHHHHH
Confidence            999999999754   3444544443

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=98.75  E-value=4.5e-07  Score=76.38  Aligned_cols=177  Identities=14%  Similarity=0.108  Sum_probs=114.9

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH----HHHhcCCCeEEE
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE----PMADANVDQYTF   93 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~----~l~~ag~d~i~~   93 (277)
                      .+..+..+.+.+.|++.+|+..++.++..+...+++.++.+++. .+.++.+|+++.++.+.+.    .+.++|+|++++
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l   90 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI   90 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEE
Confidence            36678888899999999999999998887766665567777764 7899999999999988774    788899999988


Q ss_pred             eccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh--CCccceeeCCCCCHHhH
Q psy11600         94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA--GMKVGLAIKPKTPVDVI  171 (277)
Q Consensus        94 H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~--g~~~g~~i~p~t~~~~i  171 (277)
                      |...... +.                                       ...+.++.+++.  ++.....+.+.......
T Consensus        91 ~~~~~~~-~~---------------------------------------~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~  130 (200)
T cd04722          91 HGAVGYL-AR---------------------------------------EDLELIRELREAVPDVKVVVKLSPTGELAAA  130 (200)
T ss_pred             eccCCcH-HH---------------------------------------HHHHHHHHHHHhcCCceEEEEECCCCccchh
Confidence            8775431 00                                       122333334433  44445555544433221


Q ss_pred             HHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600        172 AEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF  236 (277)
Q Consensus       172 ~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~  236 (277)
                      ...-..+|.+.+....+++.++.........+..++ ...++.+.+.||++. +++.++.+.|+++
T Consensus       131 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~  195 (200)
T cd04722         131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADG  195 (200)
T ss_pred             hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCE
Confidence            101123455554444554443322221122333333 245688999999998 8999888888774

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=98.38  E-value=6.2e-06  Score=70.23  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV  147 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~  147 (277)
                      .+..+.++.+.++|++++  |++.++..    ...++++++.+..  ...+..++++.+.++|+|  .+|++   .....
T Consensus        12 ~~~~~~l~~l~~~g~~~i--~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~--~vh~~---~~~~~   84 (196)
T cd00564          12 EDLLEVVEAALKGGVTLV--QLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGAD--GVHLG---QDDLP   84 (196)
T ss_pred             chHHHHHHHHHhcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC--EEecC---cccCC
Confidence            356677889999999998  88777652    2345666655431  122244578888999999  66887   54333


Q ss_pred             HHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHH
Q psy11600        148 IRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID  227 (277)
Q Consensus       148 ~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~  227 (277)
                      ...+++                     +...+..+++++.  ++         +.+.+..  ..+++....|.+      
T Consensus        85 ~~~~~~---------------------~~~~~~~~g~~~~--t~---------~~~~~~~--~~g~d~i~~~~~------  124 (196)
T cd00564          85 VAEARA---------------------LLGPDLIIGVSTH--SL---------EEALRAE--ELGADYVGFGPV------  124 (196)
T ss_pred             HHHHHH---------------------HcCCCCEEEeeCC--CH---------HHHHHHh--hcCCCEEEECCc------
Confidence            333332                     2233455555542  21         1222222  124666654444      


Q ss_pred             HHHHccCCCCCccc-ccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        228 ECAKCLTGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       228 ~~~~~gpg~ggq~F-~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                           .|+..++.+ .+..+++++++++. .+..+.++||||.+|++++.
T Consensus       125 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~  168 (196)
T cd00564         125 -----FPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVL  168 (196)
T ss_pred             -----cCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHH
Confidence                 266666666 66778899988876 46789999999999998775

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=98.34  E-value=6.6e-06  Score=71.59  Aligned_cols=149  Identities=9%  Similarity=0.065  Sum_probs=89.4

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCC-----cccchhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMK-----VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~-----~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      +..+.++.+.++|++++  |++.++. +...++.+++....     ...+..++++.+.++|+|.+.+  .   ......
T Consensus        22 ~~~~~~~~~~~~gv~~v--~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad~vh~--~---~~~~~~   94 (212)
T PRK00043         22 DLLEVVEAALEGGVTLV--QLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGADGVHL--G---QDDLPV   94 (212)
T ss_pred             cHHHHHHHHHhcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEec--C---cccCCH
Confidence            35567888999999999  8877764 45555555443211     1123567889999999998544  3   432222


Q ss_pred             HHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH-HhhCCCccEEEeCCCCcCcHH
Q psy11600        149 RQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL-RENYPTLNIEVDGGVGPNTID  227 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l-~~~~~~~~i~vdGgV~~~tv~  227 (277)
                      ..+++                     +...+..+++++.  +            ..++ +......|+..-|.+.     
T Consensus        95 ~~~~~---------------------~~~~~~~~g~~~~--t------------~~e~~~a~~~gaD~v~~~~~~-----  134 (212)
T PRK00043         95 ADARA---------------------LLGPDAIIGLSTH--T------------LEEAAAALAAGADYVGVGPIF-----  134 (212)
T ss_pred             HHHHH---------------------HcCCCCEEEEeCC--C------------HHHHHHHhHcCCCEEEECCcc-----
Confidence            33322                     2233444555542  2            1222 2223456666544443     


Q ss_pred             HHHHccCCCCCccccc-CHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        228 ECAKCLTGFGGQKFMQ-DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       228 ~~~~~gpg~ggq~F~~-~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                            |+...+.+.+ ..+++++++++..+++.|.++||||.+|++++.
T Consensus       135 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~  178 (212)
T PRK00043        135 ------PTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVL  178 (212)
T ss_pred             ------CCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHH
Confidence                  4443333333 237889998887766889999999999998764

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=98.24  E-value=3.1e-05  Score=75.14  Aligned_cols=157  Identities=14%  Similarity=0.082  Sum_probs=100.8

Q ss_pred             eeccCcHHhHHHHHh---cCCCeEEEeccC-CCCCHHHHHHHHhhCC--C-ccc-----chhhhhHHHHhcCCCeEEeec
Q psy11600         71 MMVQNPQQWIEPMAD---ANVDQYTFHVEP-VDNVPQVIRQIKEAGM--K-VGQ-----VLQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        71 lmv~~p~~~i~~l~~---ag~d~i~~H~e~-~d~g~~~i~~i~~~~~--~-~~d-----~p~~~i~~~~~~g~d~it~H~  138 (277)
                      +=..++++.++.+.+   .|++++++.... ...+...++++++...  . ..|     .|..+++.+.++|+|.+++|.
T Consensus        10 lD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g   89 (430)
T PRK07028         10 LDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILG   89 (430)
T ss_pred             eccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEec
Confidence            444567776655555   899999432211 1347888999988743  1 223     388899999999999999997


Q ss_pred             CCCCChH-HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE-EecCCCCCchhhhhhhhhHHHHHhhCCCccEE
Q psy11600        139 EPVDNVP-QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM-TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIE  216 (277)
Q Consensus       139 E~~~~~~-~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m-av~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~  216 (277)
                      +   +.. .+.+.++                     +++..+..++. .++|.++        .+.++.+.+.  ..+..
T Consensus        90 ~---~~~~~~~~~i~---------------------~a~~~G~~~~~g~~s~~t~--------~e~~~~a~~~--GaD~I  135 (430)
T PRK07028         90 L---ADDSTIEDAVR---------------------AARKYGVRLMADLINVPDP--------VKRAVELEEL--GVDYI  135 (430)
T ss_pred             C---CChHHHHHHHH---------------------HHHHcCCEEEEEecCCCCH--------HHHHHHHHhc--CCCEE
Confidence            7   433 2333333                     34444544444 3566553        2223333322  23433


Q ss_pred             EeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        217 VDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       217 vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .              .+|||.++.+.+..++.++++++.. ++.|.++|||+.+|+.++.
T Consensus       136 ~--------------~~pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l  180 (430)
T PRK07028        136 N--------------VHVGIDQQMLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAV  180 (430)
T ss_pred             E--------------EEeccchhhcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHH
Confidence            1              2588888888777788888888754 3779999999999987764

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=98.24  E-value=1e-05  Score=71.86  Aligned_cols=188  Identities=16%  Similarity=0.195  Sum_probs=122.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccc-c-ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH-hHHHHHhc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMD-G-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ-WIEPMADA   86 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD-g-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~-~i~~l~~a   86 (277)
                      +=+++.|..++++.++.+++. .+  |+|+.. | .+.  +.+|++.|++||+.+|+.++-++|+..|-.+ ..+.+.++
T Consensus         5 ~livALD~~~~~~A~~l~~~l-~~--~v~~iKVG~~L~--~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~   79 (218)
T PRK13305          5 LLQLALDHTSLEAAQRDVTLL-KD--HVDIVEAGTILC--LNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGA   79 (218)
T ss_pred             CEEEEeCCCCHHHHHHHHHHc-cc--cCCEEEECHHHH--HHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHc
Confidence            346778999999999998876 34  367777 3 333  4579999999999999999999999999654 46677789


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhh----CCC-cccc---h-hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEA----GMK-VGQV---L-QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK  157 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~----~~~-~~d~---p-~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~  157 (277)
                      |+|++|+|.-   +|..++++.++.    +.. ..++   . ..-.+.+.+.|.+.+.+|.-         ..-++.|  
T Consensus        80 Gad~~tv~~~---~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~l~~~g~~~~v~h~a---------~~a~~~G--  145 (218)
T PRK13305         80 GANWMTIICA---APLATVEKGHAVAQRCGGEIQIELFGNWTLDDARDWHRIGVRQAIYHRG---------RDAQASG--  145 (218)
T ss_pred             CCCEEEEecC---CCHHHHHHHHHHHHhcCCcccceEEEecCcchHHHHHHcCCHHHHHHHH---------HHHHHhC--
Confidence            9999999963   578888887663    211 1121   1 22234445555543333321         1112211  


Q ss_pred             cceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        158 VGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       158 ~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                        .                         +   +++        ..++.+++.. +++.+.|-|||++.+.....+.++++
T Consensus       146 --~-------------------------v---~s~--------~e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~rvd~  187 (218)
T PRK13305        146 --Q-------------------------Q---WGE--------ADLARMKALSDIGLELSITGGITPADLPLFKDIRVKA  187 (218)
T ss_pred             --C-------------------------C---CCH--------HHHHHHHHHhCCCCcEEEeCCcCccccccccccCCCE
Confidence              0                         0   111        1134444433 45778899999999888888888886


Q ss_pred             ---CCcccc-cCHHHHHHHHHh
Q psy11600        237 ---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 ---ggq~F~-~~~~~kI~~l~~  254 (277)
                         |+.... ++..+..+++++
T Consensus       188 iVVGR~It~A~dP~~aa~~i~~  209 (218)
T PRK13305        188 FIAGRALAGAANPAQVAADFHA  209 (218)
T ss_pred             EEECCcccCCCCHHHHHHHHHH
Confidence               777776 466666666654

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=97.99  E-value=0.00034  Score=61.47  Aligned_cols=187  Identities=14%  Similarity=0.149  Sum_probs=111.5

Q ss_pred             HHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC--CCCCHHHHHHHHhhCCCcccc-----hhhhhHHH
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP--VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPM  126 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~--~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~  126 (277)
                      +|.++++.-|....  .....+|.++.+.+.++|++++|+.-+-  ..+.+..++.+|+....|+.+     +...++.+
T Consensus        13 vIae~k~~sp~~~~--~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~   90 (217)
T cd00331          13 VIAEVKRASPSKGL--IREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEA   90 (217)
T ss_pred             EEEEecCCCCCCCc--CCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHH
Confidence            34555554343211  2344578899999999999999665443  235889999999987767654     45689999


Q ss_pred             HhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhH
Q psy11600        127 ADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKV  203 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI  203 (277)
                      .++|||.+.+-...-.  ...++.+..+..|+..-+.+   .+.+.+....+. ++++   .+++ ..++.+-.+ ++.+
T Consensus        91 ~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v---~~~~e~~~~~~~g~~~i---~~t~-~~~~~~~~~-~~~~  162 (217)
T cd00331          91 RAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEV---HDEEELERALALGAKII---GINN-RDLKTFEVD-LNTT  162 (217)
T ss_pred             HHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEE---CCHHHHHHHHHcCCCEE---EEeC-CCccccCcC-HHHH
Confidence            9999999987543000  12233333333333321122   244445444432 4444   2333 223233222 3556


Q ss_pred             HHHHhhC-CCccEEEeCCCCc-CcHHHHHHccCCC---CCccccc-CHHHHHH
Q psy11600        204 KWLRENY-PTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFMQ-DMMPKVK  250 (277)
Q Consensus       204 ~~l~~~~-~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~~-~~~~kI~  250 (277)
                      .++++.. .+..+..-|||+- +++.++.++|++.   |+..+.+ +..+.++
T Consensus       163 ~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~  215 (217)
T cd00331         163 ERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALR  215 (217)
T ss_pred             HHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence            6666655 3567788899964 8999999998885   6666654 3444443

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.75  E-value=0.0012  Score=58.33  Aligned_cols=158  Identities=14%  Similarity=0.261  Sum_probs=104.9

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.|=+-..|..+..+-.+.|.+.|++.+=+     ++.  ...+.+.++.+|+.+|++.+=+......  ++++...++
T Consensus        16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEi-----tl~--~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~a   86 (212)
T PRK05718         16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEV-----TLR--TPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEA   86 (212)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEE-----ecC--CccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHc
Confidence            4556666666777777778888888887333     243  3368899999999999988888876655  678999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCC--cccc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMK--VGQV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      |++++..    ....+.+++..++....  |.-+ |.+ +....++|++.+-+...   ..                   
T Consensus        87 GA~Fivs----P~~~~~vi~~a~~~~i~~iPG~~TptE-i~~a~~~Ga~~vKlFPa---~~-------------------  139 (212)
T PRK05718         87 GAQFIVS----PGLTPPLLKAAQEGPIPLIPGVSTPSE-LMLGMELGLRTFKFFPA---EA-------------------  139 (212)
T ss_pred             CCCEEEC----CCCCHHHHHHHHHcCCCEeCCCCCHHH-HHHHHHCCCCEEEEccc---hh-------------------
Confidence            9999842    22345667666554332  1111 444 44455555555444321   00                   


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHcc
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCL  233 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~g  233 (277)
                                                .+|       .+-++.++..+|++.+..-|||+.+|+.+..++|
T Consensus       140 --------------------------~gg-------~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag  176 (212)
T PRK05718        140 --------------------------SGG-------VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP  176 (212)
T ss_pred             --------------------------ccC-------HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC
Confidence                                      001       1235566666788999999999999999999988

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=97.72  E-value=0.00011  Score=65.73  Aligned_cols=171  Identities=16%  Similarity=0.170  Sum_probs=105.9

Q ss_pred             eeeeccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhC-CCccc-----c---hhhhhHHHHhcCCCeE
Q psy11600         69 THMMVQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAG-MKVGQ-----V---LQDWIEPMADANVDQY  134 (277)
Q Consensus        69 ~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~-~~~~d-----~---p~~~i~~~~~~g~d~i  134 (277)
                      +-+=..++++.++.+.+.|.++.  |++++++     |+++|+++|+.+ ..+.|     +   |..|++.+.++|+|++
T Consensus         7 lAlD~~~~~~~l~~~~~~~~~~~--~ikvg~~~f~~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~i   84 (230)
T PRK00230          7 VALDFPSKEEALAFLDQLDPAVL--FVKVGMELFTAGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMV   84 (230)
T ss_pred             EEcCCCCHHHHHHHHHhcCCccc--EEEEcHHHHHhcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEE
Confidence            33445578888999999998887  8888864     999999999983 33443     3   7899999999999999


Q ss_pred             EeecCCCCChHHHHHHHHHhCC----ccceeeCCCCCH--HhHH---------HHH----hh-cCceEEEEecCCCCCch
Q psy11600        135 TFHVEPVDNVPQVIRQIKEAGM----KVGLAIKPKTPV--DVIA---------EYI----ES-ADLVLIMTVEPGFGGQK  194 (277)
Q Consensus       135 t~H~E~~~~~~~~~~~I~~~g~----~~g~~i~p~t~~--~~i~---------~~i----~~-~d~vl~mav~Pgt~gq~  194 (277)
                      |||.|   .-...++...+...    ..-+++-.=|+.  +.+.         +++    +. ...-.-..+.+.     
T Consensus        85 tvH~~---ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~-----  156 (230)
T PRK00230         85 NVHAS---GGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSA-----  156 (230)
T ss_pred             EEccc---CCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh-----
Confidence            99999   54454444443210    112222111121  2221         111    10 000000011111     


Q ss_pred             hhhhhhhhHHHHHhhCCCccEEEeCCCCcC-----------cHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        195 FMQDMMPKVKWLRENYPTLNIEVDGGVGPN-----------TIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       195 ~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~-----------tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                            ..++.+++..+.--..|.+||+..           |..+.+++|+++   |...|. ++..+.++++++.
T Consensus       157 ------~~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~  226 (230)
T PRK00230        157 ------QEAAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAE  226 (230)
T ss_pred             ------HHHHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHH
Confidence                  124455555444344778999876           888899999997   888887 5777777777653

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=97.68  E-value=0.0015  Score=56.84  Aligned_cols=167  Identities=18%  Similarity=0.244  Sum_probs=102.2

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC--C-CHHHHHHHHhhCCC---ccc--c---hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD--N-VPQVIRQIKEAGMK---VGQ--V---LQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d--~-g~~~i~~i~~~~~~---~~d--~---p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.++.+.++|+|++-|-+....  . .+...+.+++.+..   .+-  +   ++...+...+.|+|.|-+|-+   ....
T Consensus        10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~---e~~~   86 (203)
T cd00405          10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD---ESPE   86 (203)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCHH
Confidence            3577888999999976653321  1 47777888877643   111  1   455556777889999999965   4334


Q ss_pred             HHHHHHHh-C--CccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC---CCchhhhhhhhhHHHHHhhCCCccEEEeCC
Q psy11600        147 VIRQIKEA-G--MKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF---GGQKFMQDMMPKVKWLRENYPTLNIEVDGG  220 (277)
Q Consensus       147 ~~~~I~~~-g--~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt---~gq~~~~~~l~kI~~l~~~~~~~~i~vdGg  220 (277)
                      ..+.+++. |  ..+.+++...+..+....+-..+|++++=+-.++.   .|+.+--+.+.++.      ..+.+.+.||
T Consensus        87 ~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~------~~~PvilaGG  160 (203)
T cd00405          87 YCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA------SRKPVILAGG  160 (203)
T ss_pred             HHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc------cCCCEEEECC
Confidence            55556542 2  23446665555444333444567888765533321   24455444443332      3567899999


Q ss_pred             CCcCcHHHHHHcc-CCC---CCccccc---CHHHHHHHHH
Q psy11600        221 VGPNTIDECAKCL-TGF---GGQKFMQ---DMMPKVKWLR  253 (277)
Q Consensus       221 V~~~tv~~~~~~g-pg~---ggq~F~~---~~~~kI~~l~  253 (277)
                      ++.+++.++.+.+ |..   ++.....   --.+|++++.
T Consensus       161 I~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~  200 (203)
T cd00405         161 LTPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFI  200 (203)
T ss_pred             CChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHH
Confidence            9999999999877 653   5544443   2456666654

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>cd04732 HisA HisA

Probab=97.62  E-value=0.0037  Score=55.23  Aligned_cols=183  Identities=16%  Similarity=0.116  Sum_probs=109.0

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc-CC-CC---CHHHHHHHHh
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE-PV-DN---VPQVIRQIKE  110 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e-~~-d~---g~~~i~~i~~  110 (277)
                      -+|+++|..|.-.. |      -+..+       +.+..+|.+..+.+.+.|++++++|-. .. .+   ...+++.+++
T Consensus         5 ~idl~~g~~v~~~~-G------~~~~~-------~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~   70 (234)
T cd04732           5 AIDLKDGKCVRLYQ-G------DYDKK-------TVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK   70 (234)
T ss_pred             EEEeECCEEEEeec-c------cCCCC-------eEECCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH
Confidence            48999998884321 1      01111       357889999999999999999988822 11 11   5678999988


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeC---------------CCCCHH
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIK---------------PKTPVD  169 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~---------------p~t~~~  169 (277)
                      ....|+.+     -.+.++.+.++|||.+.+-.++-.++..+.+..+..|. +.-+.+.               ...+.+
T Consensus        71 ~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~  150 (234)
T cd04732          71 AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEE  150 (234)
T ss_pred             hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHH
Confidence            87766655     24456777789999999876633333344455555543 1111221               222333


Q ss_pred             hHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600        170 VIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF  236 (277)
Q Consensus       170 ~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~  236 (277)
                      .+..+.+. ++.++++.+......+...   ++.++++++.. ++.+.+-||++- +.+..+.+.|++.
T Consensus       151 ~~~~~~~~ga~~iii~~~~~~g~~~g~~---~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~g  215 (234)
T cd04732         151 LAKRFEELGVKAIIYTDISRDGTLSGPN---FELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAG  215 (234)
T ss_pred             HHHHHHHcCCCEEEEEeecCCCccCCCC---HHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCE
Confidence            33334333 7888888776532211222   33444444432 466888899974 3466677766653

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=97.49  E-value=0.0026  Score=57.92  Aligned_cols=171  Identities=11%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCC--ChH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVD--NVP  145 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~--~~~  145 (277)
                      +|.++.+.+.++||+-+.+..|..  .|+.+.|+.+|+....|+..     +...+....++|||.|++-...-.  ++.
T Consensus        71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~  150 (260)
T PRK00278         71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLK  150 (260)
T ss_pred             CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHH
Confidence            567788999999999999988864  35899999999988777754     455799999999999999886200  122


Q ss_pred             HHHHHHHHhCCccceeeCCC-CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCC-C
Q psy11600        146 QVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGV-G  222 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV-~  222 (277)
                      ++++..++.|+.    .-.. -..+++.... ..+.- ++.+|+-. .+.| +.-++...++.+..++ .-+..-||+ +
T Consensus       151 ~li~~a~~lGl~----~lvevh~~~E~~~A~-~~gad-iIgin~rd-l~~~-~~d~~~~~~l~~~~p~~~~vIaegGI~t  222 (260)
T PRK00278        151 ELLDYAHSLGLD----VLVEVHDEEELERAL-KLGAP-LIGINNRN-LKTF-EVDLETTERLAPLIPSDRLVVSESGIFT  222 (260)
T ss_pred             HHHHHHHHcCCe----EEEEeCCHHHHHHHH-HcCCC-EEEECCCC-cccc-cCCHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            334444443311    1111 1223333333 22222 23456521 1222 2225566666666664 233334555 7


Q ss_pred             cCcHHHHHHccCCC---CCccccc-CHHHHHHHHH
Q psy11600        223 PNTIDECAKCLTGF---GGQKFMQ-DMMPKVKWLR  253 (277)
Q Consensus       223 ~~tv~~~~~~gpg~---ggq~F~~-~~~~kI~~l~  253 (277)
                      .+++..+.++|++.   |+....+ +..+.++++.
T Consensus       223 ~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~  257 (260)
T PRK00278        223 PEDLKRLAKAGADAVLVGESLMRADDPGAALRELL  257 (260)
T ss_pred             HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence            99999999999885   7777774 5666666554

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.46  E-value=0.011  Score=53.77  Aligned_cols=178  Identities=17%  Similarity=0.248  Sum_probs=119.0

Q ss_pred             HHHHhcCCCCeeeeeeeccCcHHh-----HHHHHhcCCCeEEEecc---C-CCC-------------------CHHHHHH
Q psy11600         56 KCLRNKIPKAFFETHMMVQNPQQW-----IEPMADANVDQYTFHVE---P-VDN-------------------VPQVIRQ  107 (277)
Q Consensus        56 ~~l~~~~~~~~~d~Hlmv~~p~~~-----i~~l~~ag~d~i~~H~e---~-~d~-------------------g~~~i~~  107 (277)
                      +++++. -+.-+-.|++..+|...     ++.+.+.|+|++-+-+=   + .||                   ..+.+++
T Consensus         4 ~~~~~~-~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~   82 (258)
T PRK13111          4 AALKAE-GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE   82 (258)
T ss_pred             HHHHhc-CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            445543 34568999999987653     67788899999955432   2 244                   3566777


Q ss_pred             HHhh-CCCc-ccc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHH
Q psy11600        108 IKEA-GMKV-GQV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI  175 (277)
Q Consensus       108 i~~~-~~~~-~d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i  175 (277)
                      +|+. ...| +.|          .++|++.++++|+|-+.+.==|-+......+..++.|+..-.-+.|.|+-+.+..+.
T Consensus        83 ~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~  162 (258)
T PRK13111         83 IREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIA  162 (258)
T ss_pred             HHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence            7733 3334 222          688999999999998888521111223455666777877667788999888887776


Q ss_pred             hh-cCceEEEEecCCCCCc-hhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC
Q psy11600        176 ES-ADLVLIMTVEPGFGGQ-KFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF  236 (277)
Q Consensus       176 ~~-~d~vl~mav~Pgt~gq-~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~  236 (277)
                      .. -+++-.+++..-|+.+ .+-++..+.++.+++.. ++-+.+-+|| +.+++.++.+. ++.
T Consensus       163 ~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADG  224 (258)
T PRK13111        163 SHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADG  224 (258)
T ss_pred             HhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCE
Confidence            55 4667767776545543 23345555777777754 6778899999 66888888775 663

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=97.43  E-value=0.007  Score=52.24  Aligned_cols=166  Identities=16%  Similarity=0.246  Sum_probs=100.9

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      +.|=+=..|..+..+-++.+.+.|++++-++.-+..       ..+.++.+++.+|++.+-+.... + .+.++...++|
T Consensus         6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~-~-~~~~~~a~~~G   76 (190)
T cd00452           6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVL-T-PEQADAAIAAG   76 (190)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCC-C-HHHHHHHHHcC
Confidence            445555567777788888999999999999866533       34589999988877655554433 1 34678888999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP  167 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~  167 (277)
                      ++.+  |.-..+  +.+++.                                           .+..|+..-.|+.   +
T Consensus        77 a~~i--~~p~~~--~~~~~~-------------------------------------------~~~~~~~~i~gv~---t  106 (190)
T cd00452          77 AQFI--VSPGLD--PEVVKA-------------------------------------------ANRAGIPLLPGVA---T  106 (190)
T ss_pred             CCEE--EcCCCC--HHHHHH-------------------------------------------HHHcCCcEECCcC---C
Confidence            9999  643322  333333                                           3332221111111   2


Q ss_pred             HHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccc
Q psy11600        168 VDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKF  241 (277)
Q Consensus       168 ~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F  241 (277)
                      ++++....+ .+|++-+   .|..+   .   -.+-++.++...+++.+..-|||+.+++.++.++|++.   ++..|
T Consensus       107 ~~e~~~A~~~Gad~i~~---~p~~~---~---g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~  175 (190)
T cd00452         107 PTEIMQALELGADIVKL---FPAEA---V---GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLP  175 (190)
T ss_pred             HHHHHHHHHCCCCEEEE---cCCcc---c---CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcc
Confidence            222222221 1344332   33211   1   12335566666777889999999999999999999885   44444

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.34  E-value=0.0077  Score=53.81  Aligned_cols=187  Identities=11%  Similarity=0.130  Sum_probs=113.6

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccCCCC---CHHHHHHHHhh
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDN---VPQVIRQIKEA  111 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~~d~---g~~~i~~i~~~  111 (277)
                      -+|+++|..|.-...-       +..++.+ -.-..+..+|.+.++.+.+.|++++|+ .++...+   ...+|+++.+.
T Consensus         5 ~iDl~~G~~V~~~~G~-------~~~~~p~-~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~   76 (233)
T cd04723           5 VIDLKDGVVVHGVGGD-------RDNYRPI-TSNLCSTSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAA   76 (233)
T ss_pred             EEECcCCEEEEeeccC-------hhhcccc-ccCcccCCCHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHh
Confidence            3899999888543321       1111111 122234679999999999999999932 1333222   56788888887


Q ss_pred             CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCC-----------CCCHHhHHHH
Q psy11600        112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKP-----------KTPVDVIAEY  174 (277)
Q Consensus       112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p-----------~t~~~~i~~~  174 (277)
                      +..++.+     -.+-++.+.++||+.+.+-.|+.++ .-+.+.+++.|- +.-+++..           .++.+.+..+
T Consensus        77 ~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~  155 (233)
T cd04723          77 WPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRL  155 (233)
T ss_pred             CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHH
Confidence            7667665     5667788889999999999884443 334555666654 22333332           2233444444


Q ss_pred             HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600        175 IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG  235 (277)
Q Consensus       175 i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg  235 (277)
                      -..++.++++.++....++....+++.++..   . ..+.+.+-||+.- +.+..+.+.|+.
T Consensus       156 ~~~~~~li~~di~~~G~~~g~~~~~~~~i~~---~-~~ipvi~~GGi~s~edi~~l~~~G~~  213 (233)
T cd04723         156 AKWPEELIVLDIDRVGSGQGPDLELLERLAA---R-ADIPVIAAGGVRSVEDLELLKKLGAS  213 (233)
T ss_pred             HHhCCeEEEEEcCccccCCCcCHHHHHHHHH---h-cCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence            4446778888887644444444444444433   2 3567888898864 455556666655

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PLN02591 tryptophan synthase

Probab=97.30  E-value=0.017  Score=52.32  Aligned_cols=169  Identities=15%  Similarity=0.248  Sum_probs=116.0

Q ss_pred             eeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhhCCCc-c
Q psy11600         66 FFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEAGMKV-G  116 (277)
Q Consensus        66 ~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~~~~~-~  116 (277)
                      .+-.+++..+|..     .++.+.++|+|.+-+-+   |+ .||                   ..++++.+|+....| +
T Consensus         3 ~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i   82 (250)
T PLN02591          3 AFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV   82 (250)
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence            3678899998765     37778899999995543   22 244                   456677777554444 3


Q ss_pred             cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEE
Q psy11600        117 QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMT  185 (277)
Q Consensus       117 d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~ma  185 (277)
                      .|          .++|++.+.++|+|-+.+.==|-+......+..++.|+..=.-+.|.|+-+.+..+.... +++-.++
T Consensus        83 lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs  162 (250)
T PLN02591         83 LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVS  162 (250)
T ss_pred             EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEee
Confidence            33          588999999999998888632111234566677777777666777999888888877654 7777667


Q ss_pred             ecCCCCCc--hhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        186 VEPGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       186 v~Pgt~gq--~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      .. |+.|.  .+-+++.+.++.+++. .++-+.+--||+ .+++..+.+.|++.
T Consensus       163 ~~-GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADG  214 (250)
T PLN02591        163 ST-GVTGARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADG  214 (250)
T ss_pred             CC-CCcCCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCE
Confidence            64 44443  2234444557777774 577787877888 78888888888884

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=97.24  E-value=0.015  Score=51.17  Aligned_cols=150  Identities=18%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc-----c-hhhhhHHHHhcCCCeEEeecCCCCChHHHHH
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ-----V-LQDWIEPMADANVDQYTFHVEPVDNVPQVIR  149 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d-----~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~  149 (277)
                      ..+.++.+.+.|+..+-+=... ....+.|+.+++......-     + -.+.++...++||+++-....   + .++.+
T Consensus        24 ~~~~~~a~~~gGi~~iEvt~~~-~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~---~-~~v~~   98 (206)
T PRK09140         24 ALAHVGALIEAGFRAIEIPLNS-PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT---D-PEVIR   98 (206)
T ss_pred             HHHHHHHHHHCCCCEEEEeCCC-ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC---C-HHHHH
Confidence            3445777888899988443222 2355567777665432211     2 466779999999999877543   3 46777


Q ss_pred             HHHHhCCccceeeCCCCCHHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCcCcHH
Q psy11600        150 QIKEAGMKVGLAIKPKTPVDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTID  227 (277)
Q Consensus       150 ~I~~~g~~~g~~i~p~t~~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~  227 (277)
                      ..+..|+....|  +.|+ +++... -..+|++-   +-|...   +   -++.++.++...+ .+.+..-|||+.+++.
T Consensus        99 ~~~~~~~~~~~G--~~t~-~E~~~A~~~Gad~vk---~Fpa~~---~---G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~  166 (206)
T PRK09140         99 RAVALGMVVMPG--VATP-TEAFAALRAGAQALK---LFPASQ---L---GPAGIKALRAVLPPDVPVFAVGGVTPENLA  166 (206)
T ss_pred             HHHHCCCcEEcc--cCCH-HHHHHHHHcCCCEEE---ECCCCC---C---CHHHHHHHHhhcCCCCeEEEECCCCHHHHH
Confidence            777766555555  3444 333333 23466664   344221   1   1344666666665 6889999999999999


Q ss_pred             HHHHccCCC---CCcccc
Q psy11600        228 ECAKCLTGF---GGQKFM  242 (277)
Q Consensus       228 ~~~~~gpg~---ggq~F~  242 (277)
                      ++.++|++.   ++..|.
T Consensus       167 ~~~~aGa~~vav~s~l~~  184 (206)
T PRK09140        167 PYLAAGAAGFGLGSALYR  184 (206)
T ss_pred             HHHHCCCeEEEEehHhcc
Confidence            999999996   666665

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.17  E-value=0.011  Score=52.70  Aligned_cols=180  Identities=18%  Similarity=0.150  Sum_probs=104.8

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCC----C---CHHHHHHHH
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD----N---VPQVIRQIK  109 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d----~---g~~~i~~i~  109 (277)
                      +|++||..|.-..+-       |.   +..    .+..+|.+.++.+.+.|++++  |+--.+    +   -...|+.+.
T Consensus         9 idl~~g~~v~~~~g~-------~~---~~~----~~~~~~~e~a~~~~~~G~~~l--~i~dl~~~~~~~~~~~~~i~~i~   72 (241)
T PRK13585          9 VDMKGGKCVQLVQGE-------PG---TET----VSYGDPVEVAKRWVDAGAETL--HLVDLDGAFEGERKNAEAIEKII   72 (241)
T ss_pred             EEeECCeEEEeeccc-------cC---Cce----EECCCHHHHHHHHHHcCCCEE--EEEechhhhcCCcccHHHHHHHH
Confidence            799999988433321       11   111    467899999999999999998  643222    1   456777777


Q ss_pred             hhCCCcccc---h--hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCC--------------CCCHH
Q psy11600        110 EAGMKVGQV---L--QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKP--------------KTPVD  169 (277)
Q Consensus       110 ~~~~~~~d~---p--~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p--------------~t~~~  169 (277)
                      +....++.+   .  .+-++.+.++||+.+.+-.+..+++..+.+..+..|.. .-+++..              +....
T Consensus        73 ~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~  152 (241)
T PRK13585         73 EAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPV  152 (241)
T ss_pred             HHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHH
Confidence            777666655   2  33467777899999887665222223344444444321 1122221              11222


Q ss_pred             hHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        170 VIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       170 ~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      .+.+.+.+  ++.+++..+.+....+..   -++.++++.+.. ++.+.+-|||+ .+.+..+.+.|++.
T Consensus       153 ~~~~~~~~~G~~~i~~~~~~~~g~~~g~---~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~g  218 (241)
T PRK13585        153 EAAKRFEELGAGSILFTNVDVEGLLEGV---NTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAG  218 (241)
T ss_pred             HHHHHHHHcCCCEEEEEeecCCCCcCCC---CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence            33333333  466777777553211111   123345555433 47789999999 77888888888774

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=97.14  E-value=0.022  Score=50.25  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh----HHHHHh
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW----IEPMAD   85 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~----i~~l~~   85 (277)
                      ++++|..++++.++.+++. .++  +|+..  ..|.  ..+|+++++.||+.  ..++-++++..|..+.    ++.+.+
T Consensus         2 ivALD~~~~~~a~~i~~~~-~~~--v~~iKvg~~l~--~~~g~~~i~~l~~~--~~~i~~DlK~~DIg~tv~~~~~~~~~   74 (216)
T cd04725           2 IVALDPPDEEFALALIDAL-GPY--VCAVKVGLELF--EAAGPEIVKELREL--GFLVFLDLKLGDIPNTVAAAAEALLG   74 (216)
T ss_pred             EEEeCCCCHHHHHHHHHhc-CCc--ccEEEECHHHH--HhcCHHHHHHHHHC--CCcEEEEeecCchHHHHHHHHHHHHh
Confidence            4688999999999988876 555  67877  3344  44899999999986  3789999999997764    445678


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      .|+|++|+|.   -.|...+++..+.
T Consensus        75 ~gad~~Tvh~---~~G~~~l~~~~~~   97 (216)
T cd04725          75 LGADAVTVHP---YGGSDMLKAALEA   97 (216)
T ss_pred             cCCCEEEECC---cCCHHHHHHHHHH
Confidence            8999999995   3467777777654

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.11  E-value=0.045  Score=49.89  Aligned_cols=176  Identities=14%  Similarity=0.276  Sum_probs=115.2

Q ss_pred             HHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHH
Q psy11600         56 KCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQ  107 (277)
Q Consensus        56 ~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~  107 (277)
                      +++|+. -+..+-.+++..+|..     .++.+.++|+|.+-+-+   |+ .||                   ..++++.
T Consensus         2 ~~lk~~-~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~   80 (259)
T PF00290_consen    2 AELKKE-GRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE   80 (259)
T ss_dssp             HHHHHT-TBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred             hhHHhC-CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            356654 5678899999999844     57888899999985543   22 244                   4566788


Q ss_pred             HH-hhCCCcc-cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHH
Q psy11600        108 IK-EAGMKVG-QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI  175 (277)
Q Consensus       108 i~-~~~~~~~-d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i  175 (277)
                      +| +.+..|+ .|          .++|++.+.++|+|-+.+.==|-+....+.+.+++.|+..=.=+.|.|+-+.+..+.
T Consensus        81 ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~  160 (259)
T PF00290_consen   81 IRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIA  160 (259)
T ss_dssp             HHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHH
T ss_pred             HhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence            88 5555554 22          578999999999999988632111344666777888877777778999999999988


Q ss_pred             hh-cCceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH--ccCC
Q psy11600        176 ES-ADLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK--CLTG  235 (277)
Q Consensus       176 ~~-~d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~--~gpg  235 (277)
                      +. -+++-.++...-|+.+. +..++.+.++.++++. ++-+.+  |-.+.|-+.+.+  .++|
T Consensus       161 ~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~v--GFGI~~~e~~~~~~~~aD  221 (259)
T PF00290_consen  161 KQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAV--GFGISTPEQAKKLAAGAD  221 (259)
T ss_dssp             HH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEE--ESSS-SHHHHHHHHTTSS
T ss_pred             HhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEE--ecCCCCHHHHHHHHccCC
Confidence            66 56666667654455433 4456777788887765 555554  333345444444  4455

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.98  E-value=0.045  Score=47.35  Aligned_cols=169  Identities=17%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.|=+-.-|..+..+-++.+.+.|++++.+=.=+-       -..+.++.+++.++....-...... . +.++...++
T Consensus        13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~-------~~~e~~~~~~~~~~~~~~g~gtvl~-~-d~~~~A~~~   83 (187)
T PRK07455         13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSD-------QPAELISQLREKLPECIIGTGTILT-L-EDLEEAIAA   83 (187)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC-------CHHHHHHHHHHhCCCcEEeEEEEEc-H-HHHHHHHHc
Confidence            456666667777788888889999999966632111       1346777888766655444433332 3 788889999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|.+  |.-..+  +..++.-                                           +..+...=.|  ..|
T Consensus        84 gAdgv--~~p~~~--~~~~~~~-------------------------------------------~~~~~~~i~G--~~t  114 (187)
T PRK07455         84 GAQFC--FTPHVD--PELIEAA-------------------------------------------VAQDIPIIPG--ALT  114 (187)
T ss_pred             CCCEE--ECCCCC--HHHHHHH-------------------------------------------HHcCCCEEcC--cCC
Confidence            99999  644333  2222221                                           1111110011  111


Q ss_pred             CHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600        167 PVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       167 ~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      +- ++.... .-+|++-+   -|..+   ..  =++-++.++...+++.+..-|||+.+++.++.++|+..   +|..|.
T Consensus       115 ~~-e~~~A~~~Gadyv~~---Fpt~~---~~--G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~  185 (187)
T PRK07455        115 PT-EIVTAWQAGASCVKV---FPVQA---VG--GADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFP  185 (187)
T ss_pred             HH-HHHHHHHCCCCEEEE---CcCCc---cc--CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhccc
Confidence            11 111111 22344322   33210   00  03346666666778889999999999999999998885   555443

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.96  E-value=0.016  Score=52.98  Aligned_cols=159  Identities=14%  Similarity=0.138  Sum_probs=97.3

Q ss_pred             CCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCCCC------------CHHHHHHHHhhCCCcccc---------
Q psy11600         63 PKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPVDN------------VPQVIRQIKEAGMKVGQV---------  118 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~d~------------g~~~i~~i~~~~~~~~d~---------  118 (277)
                      ++.++-+.++-.+++++   ++.+.++|+|.+-+++-.-..            --++++++|+....|+.+         
T Consensus        97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~  176 (289)
T cd02810          97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE  176 (289)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence            57899999998888776   666677899999888654221            234688888876555543         


Q ss_pred             -hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhh
Q psy11600        119 -LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQ  197 (277)
Q Consensus       119 -p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~  197 (277)
                       ..+.++.+.++|+|.+++|--   ....... ..      .  ..++.                 ....-|.+|....+
T Consensus       177 ~~~~~a~~l~~~Gad~i~~~~~---~~~~~~~-~~------~--~~~~~-----------------~~~~~g~sg~~~~~  227 (289)
T cd02810         177 DIVELAKAAERAGADGLTAINT---ISGRVVD-LK------T--VGPGP-----------------KRGTGGLSGAPIRP  227 (289)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcc---cCcccee-cc------c--Ccccc-----------------CCCCCccCcHHHHH
Confidence             245677788999999999842   1110000 00      0  00000                 00011223322233


Q ss_pred             hhhhhHHHHHhhCC-CccEEEeCCCC-cCcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600        198 DMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM--QDMMPKVK  250 (277)
Q Consensus       198 ~~l~kI~~l~~~~~-~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~--~~~~~kI~  250 (277)
                      ..++.++++++..+ ++.+...|||+ .+.+.+++.+|++.   |...+.  |....|++
T Consensus       228 ~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~  287 (289)
T cd02810         228 LALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK  287 (289)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence            44666777777665 78899999997 57788888888885   444442  55555554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=96.89  E-value=0.036  Score=50.92  Aligned_cols=168  Identities=15%  Similarity=0.147  Sum_probs=99.1

Q ss_pred             HHHHHHHhc--CCCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCCC---------C----CHHHHHHHHhhCCC
Q psy11600         53 PVVKCLRNK--IPKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPVD---------N----VPQVIRQIKEAGMK  114 (277)
Q Consensus        53 ~~v~~l~~~--~~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~d---------~----g~~~i~~i~~~~~~  114 (277)
                      .+++.+++.  ..+.|+-+-++-.+++++   ++.+.++|+|.+.+|+-.-.         .    -.++++++|+.+..
T Consensus        76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~  155 (296)
T cd04740          76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV  155 (296)
T ss_pred             HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence            445555432  146899999998888776   55566789999999865321         1    33578888888766


Q ss_pred             cccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe
Q psy11600        115 VGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV  186 (277)
Q Consensus       115 ~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav  186 (277)
                      |+-+        ..+.++.+.++|+|.++++--    +.             |..+...+.-    +.         +..
T Consensus       156 Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt----~~-------------g~~~~~~~~~----~~---------~~~  205 (296)
T cd04740         156 PVIVKLTPNVTDIVEIARAAEEAGADGLTLINT----LK-------------GMAIDIETRK----PI---------LGN  205 (296)
T ss_pred             CEEEEeCCCchhHHHHHHHHHHcCCCEEEEECC----Cc-------------ccccccccCc----ee---------ecC
Confidence            6544        234567788899998887521    10             0000000000    00         000


Q ss_pred             -cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-ccCHHHHHHH
Q psy11600        187 -EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-MQDMMPKVKW  251 (277)
Q Consensus       187 -~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~~~~~~kI~~  251 (277)
                       .-+.+|....+..++.++++++.. ++.+...||| +.+.+.+++++|++.   |...+ .|....|+++
T Consensus       206 ~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~  275 (296)
T cd04740         206 VTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE  275 (296)
T ss_pred             CcceecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence             012233222333455566666543 5788899999 568888999999985   44433 3667777664

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=96.85  E-value=0.012  Score=51.71  Aligned_cols=129  Identities=17%  Similarity=0.179  Sum_probs=87.2

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEecc-------------ccccccCCCCCHHHHHHHHhcCCCCeeeeee
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVM-------------DGTFVPNLTFGHPVVKCLRNKIPKAFFETHM   71 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~Dim-------------Dg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl   71 (277)
                      ...+.+||...|...+.+..+++.+.|.|.  +||-             -|.+..+..|-.++++.+|+.. ..++.+-+
T Consensus        54 ~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~--ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~  130 (231)
T cd02801          54 ERPLIVQLGGSDPETLAEAAKIVEELGADG--IDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKI  130 (231)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHhcCCCE--EEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence            345788999999999999999999999999  5542             1233345556678899999864 46666655


Q ss_pred             ecc-----CcHHhHHHHHhcCCCeEEEeccCCC------CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeE
Q psy11600         72 MVQ-----NPQQWIEPMADANVDQYTFHVEPVD------NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQY  134 (277)
Q Consensus        72 mv~-----~p~~~i~~l~~ag~d~i~~H~e~~d------~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~i  134 (277)
                      -..     +..+.++.+.++|++++++|.-...      ...+.++.+++....|+-.      +++..+.+...|+|.+
T Consensus       131 r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V  210 (231)
T cd02801         131 RLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGV  210 (231)
T ss_pred             eeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence            332     3445678889999999998864211      1456667777766555432      5555554444477776


Q ss_pred             Ee
Q psy11600        135 TF  136 (277)
Q Consensus       135 t~  136 (277)
                      .+
T Consensus       211 ~i  212 (231)
T cd02801         211 MI  212 (231)
T ss_pred             EE
Confidence            66

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=96.82  E-value=0.014  Score=54.39  Aligned_cols=129  Identities=16%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccc------------cc-ccCCCCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG------------TF-VPNLTFGHPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg------------~f-vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      -+.++|...|...+.+..+.+++.|+|.  +|+-=|            .+ ..+..+-.++++++|+. .++|+.+-+=.
T Consensus        64 p~i~ql~g~~~~~~~~aa~~~~~~G~d~--IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~  140 (319)
T TIGR00737        64 PISVQLFGSDPDTMAEAAKINEELGADI--IDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRI  140 (319)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHhCCCCE--EEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEc
Confidence            4789999999999999999999999998  666322            11 11222334678888876 67888887632


Q ss_pred             c------CcHHhHHHHHhcCCCeEEEeccCCCC------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEE
Q psy11600         74 Q------NPQQWIEPMADANVDQYTFHVEPVDN------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYT  135 (277)
Q Consensus        74 ~------~p~~~i~~l~~ag~d~i~~H~e~~d~------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it  135 (277)
                      .      +..+.++.+.++|+|++++|......      -.+.++.+++....|+-.      +++..+.+...|||.+.
T Consensus       141 g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm  220 (319)
T TIGR00737       141 GWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM  220 (319)
T ss_pred             ccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence            1      24566788899999999999654221      345677777776655432      78877888788999988


Q ss_pred             eec
Q psy11600        136 FHV  138 (277)
Q Consensus       136 ~H~  138 (277)
                      +=-
T Consensus       221 igR  223 (319)
T TIGR00737       221 IGR  223 (319)
T ss_pred             ECh
Confidence            853

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=96.81  E-value=0.018  Score=52.54  Aligned_cols=107  Identities=19%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhCCccceeeCCCCCHHhHHH---HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        145 PQVIRQIKEAGMKVGLAIKPKTPVDVIAE---YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       145 ~~~~~~I~~~g~~~g~~i~p~t~~~~i~~---~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                      ++.++..++.|  ..--+-|..|+++..+   .++..++-++..+.|.|+.        ++++.+.+....+-..|    
T Consensus       109 e~F~~~~~~aG--vdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~--------eri~~i~~~a~gFIY~v----  174 (263)
T CHL00200        109 NKFIKKISQAG--VKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK--------SRIQKIARAAPGCIYLV----  174 (263)
T ss_pred             HHHHHHHHHcC--CeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH--------HHHHHHHHhCCCcEEEE----
Confidence            34555566666  3344568889876654   4577899999999999973        45666665555554432    


Q ss_pred             CcCcHHHHHHccCCCCCcc--cccCHHHHHHHHHhhCCCCeEEEeCCCC-ccCHHHhh
Q psy11600        222 GPNTIDECAKCLTGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECA  276 (277)
Q Consensus       222 ~~~tv~~~~~~gpg~ggq~--F~~~~~~kI~~l~~~~~~~~I~VDGGI~-~~~~~~~~  276 (277)
                         +       .+|++|+.  +.++..+.++++|+. .+.-|.|++||+ +++++++.
T Consensus       175 ---S-------~~GvTG~~~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~~  221 (263)
T CHL00200        175 ---S-------TTGVTGLKTELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIK  221 (263)
T ss_pred             ---c-------CCCCCCCCccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHH
Confidence               2       27887763  334566667777764 356799999999 78888765

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.81  E-value=0.072  Score=47.71  Aligned_cols=182  Identities=10%  Similarity=0.090  Sum_probs=103.0

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh-cCCCeEEE-eccCCC-C---CHHHHHHHH
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD-ANVDQYTF-HVEPVD-N---VPQVIRQIK  109 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~-ag~d~i~~-H~e~~d-~---g~~~i~~i~  109 (277)
                      -+|+++|.-|.- .=|-      +..  .     ..+..+|.+..+.+.+ .|++++|+ .++... +   ...+|+++.
T Consensus         7 aIDl~~G~~Vr~-~~G~------~~~--~-----~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~   72 (234)
T PRK13587          7 AIDLIGSTSVRL-TEGK------YDS--E-----EKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLR   72 (234)
T ss_pred             EEEccCCEEEEc-Cccc------CCC--c-----eEeCCCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHH
Confidence            389999987721 1121      211  1     2234799999999998 69999932 133332 2   467899998


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--C------------CCHHh
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--K------------TPVDV  170 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~------------t~~~~  170 (277)
                      +.+..|+.+     -.+-++.+.++||+.+.+-.++.+++.-+.+..++.|-+.-+++..  |            .++..
T Consensus        73 ~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~  152 (234)
T PRK13587         73 RLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFS  152 (234)
T ss_pred             hhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHH
Confidence            877777766     4556788888999999998874444443444445554332233221  1            22222


Q ss_pred             HHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600        171 IAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG  235 (277)
Q Consensus       171 i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg  235 (277)
                      +.+.+..  +.-++.+.++.....+.+..++++++.   +. .++.+.+-||+.- +-+..+.+.|+.
T Consensus       153 ~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~---~~-~~ipvi~~GGi~s~edi~~l~~~G~~  216 (234)
T PRK13587        153 FVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLV---KA-TTIPVIASGGIRHQQDIQRLASLNVH  216 (234)
T ss_pred             HHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHH---Hh-CCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence            3333333  356667777664333333433443333   22 3456777787763 244444555444

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=96.79  E-value=0.033  Score=49.09  Aligned_cols=147  Identities=21%  Similarity=0.280  Sum_probs=89.7

Q ss_pred             hHHHHHhcCCCeEEEeccCCCC---CHHHHHHHHhhCC---Cccc-----chhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600         79 WIEPMADANVDQYTFHVEPVDN---VPQVIRQIKEAGM---KVGQ-----VLQDWIEPMADANVDQYTFHVEPVDNVPQV  147 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~d~---g~~~i~~i~~~~~---~~~d-----~p~~~i~~~~~~g~d~it~H~E~~~~~~~~  147 (277)
                      .++.+.++|+|++-|-++...-   .++..+.|.+...   .++-     .|+...+.+.+++.|.|=+|-.   .....
T Consensus        15 da~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~---e~~~~   91 (210)
T PRK01222         15 DAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD---ETPEF   91 (210)
T ss_pred             HHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCHHH
Confidence            5778899999999987654221   5667777776532   1221     1777888889999999999954   33444


Q ss_pred             HHHHHH-hCCc--cceeeCCCCCHHhHHHHHhhcCceEEEEecC--CCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        148 IRQIKE-AGMK--VGLAIKPKTPVDVIAEYIESADLVLIMTVEP--GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       148 ~~~I~~-~g~~--~g~~i~p~t~~~~i~~~i~~~d~vl~mav~P--gt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      ++.++. .+.+  +-+.+.....+....++...+|.+++=+-.|  |..|..|.-..+.     +.+  ...+.+.||++
T Consensus        92 ~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~--~~p~~LAGGi~  164 (210)
T PRK01222         92 CRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL--AKPWILAGGLN  164 (210)
T ss_pred             HHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc--CCCEEEECCCC
Confidence            555554 2222  2233322223444444555678877665554  4445555433331     111  34688999999


Q ss_pred             cCcHHHHHH-ccCC
Q psy11600        223 PNTIDECAK-CLTG  235 (277)
Q Consensus       223 ~~tv~~~~~-~gpg  235 (277)
                      .+|+.++.+ .+|.
T Consensus       165 peNv~~ai~~~~p~  178 (210)
T PRK01222        165 PDNVAEAIRQVRPY  178 (210)
T ss_pred             HHHHHHHHHhcCCC
Confidence            999998876 3663

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.75  E-value=0.06  Score=48.52  Aligned_cols=166  Identities=11%  Similarity=0.191  Sum_probs=98.3

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccC-CCC---CHHHHHHHHhh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEP-VDN---VPQVIRQIKEA  111 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~-~d~---g~~~i~~i~~~  111 (277)
                      +|++||.-|-           +.+   ...........||.+.++.+.+.|++++|+ .+|. ..+   ...+|+++.+.
T Consensus         7 IDl~~Gk~Vr-----------l~~---G~~~~~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~   72 (241)
T PRK14114          7 IDLFRGKVAR-----------MVK---GKKENTIFYEKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF   72 (241)
T ss_pred             EEEECCEEEE-----------eec---cccCcceEECCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh
Confidence            7899988761           111   111222346789999999999999999932 1332 223   45778888887


Q ss_pred             CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC--------------CCCCHHhHH
Q psy11600        112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK--------------PKTPVDVIA  172 (277)
Q Consensus       112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~--------------p~t~~~~i~  172 (277)
                      + .|+.+     -.+-++.+.++||+.+.+-.++.+++. .++.+.+.|-+.-+++-              .+.++..+.
T Consensus        73 ~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~-~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~  150 (241)
T PRK14114         73 A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPS-FLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLL  150 (241)
T ss_pred             c-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHH-HHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHH
Confidence            6 46655     356677888899999999887444433 34444544433222222              122233333


Q ss_pred             HHHhhc--CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        173 EYIESA--DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       173 ~~i~~~--d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      +.+...  .-++++.+.-.-..+-+.-++++++   ++. .++.+..-|||.
T Consensus       151 ~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l---~~~-~~~pviasGGv~  198 (241)
T PRK14114        151 KRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKI---AIE-AEVKVFAAGGIS  198 (241)
T ss_pred             HHHHhcCCCEEEEEeechhhcCCCcCHHHHHHH---HHH-CCCCEEEECCCC
Confidence            344443  5677777776443344444444443   333 367788889986

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=96.68  E-value=0.026  Score=52.75  Aligned_cols=131  Identities=14%  Similarity=0.098  Sum_probs=95.4

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccccccc---CCCCC----------HHHHHHHHhcCC-CCeeeeeee
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVP---NLTFG----------HPVVKCLRNKIP-KAFFETHMM   72 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp---~~~~g----------~~~v~~l~~~~~-~~~~d~Hlm   72 (277)
                      -+.++|+..|...+.+..+.+++.|.|.  +||-=|.-+|   .-..|          -++++++|+..+ ++|+.+-+=
T Consensus        64 p~~vQl~g~~p~~~~~aA~~~~~~g~d~--IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR  141 (312)
T PRK10550         64 LVRIQLLGQYPQWLAENAARAVELGSWG--VDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR  141 (312)
T ss_pred             cEEEEeccCCHHHHHHHHHHHHHcCCCE--EEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence            4789999999999999999999999887  7776554322   12222          456777787754 588888765


Q ss_pred             cc--C---cHHhHHHHHhcCCCeEEEeccCCCC---C----HHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCeE
Q psy11600         73 VQ--N---PQQWIEPMADANVDQYTFHVEPVDN---V----PQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQY  134 (277)
Q Consensus        73 v~--~---p~~~i~~l~~ag~d~i~~H~e~~d~---g----~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~i  134 (277)
                      ..  +   ..+.++.+.++|++.+|+|.-....   |    .+.++.+++....|+    ++  |++..+.+...|||.|
T Consensus       142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgV  221 (312)
T PRK10550        142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAV  221 (312)
T ss_pred             CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEE
Confidence            43  2   2345677889999999999765321   2    457899998876655    33  8888888888999999


Q ss_pred             EeecC
Q psy11600        135 TFHVE  139 (277)
Q Consensus       135 t~H~E  139 (277)
                      .+--.
T Consensus       222 miGRg  226 (312)
T PRK10550        222 MIGRG  226 (312)
T ss_pred             EEcHH
Confidence            98544

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=96.66  E-value=0.0071  Score=53.26  Aligned_cols=67  Identities=9%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             ccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhhCCCc------ccc---hhhhhHHHHhcCCCeEEeecC
Q psy11600         73 VQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEAGMKV------GQV---LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        73 v~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~~~~~------~d~---p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +.++++.++.+.+.+  ++++=+|.+.+ .+|+.+++.+|+.+..+      +|+   +..+++.+.++|||++|+|.+
T Consensus         7 ~~~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~   85 (213)
T TIGR01740         7 VTTKDEALDLADSLGPEIEVIKVGIDLLLDGGDKIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV   85 (213)
T ss_pred             CCCHHHHHHHHHhcCCcCcEEEECHHHHHhcCHHHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            346677788787777  78877898875 56999999999987654      455   467888899999999999998

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=96.62  E-value=0.013  Score=52.18  Aligned_cols=180  Identities=16%  Similarity=0.221  Sum_probs=109.5

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccC-CCC---CHHHHHHHHhh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEP-VDN---VPQVIRQIKEA  111 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~-~d~---g~~~i~~i~~~  111 (277)
                      +|+++|..|-           +++   ...........+|.+.++.+.+.|++++|+- +|. ..+   ...+|+.+.+.
T Consensus         6 iDl~~G~~Vr-----------~~~---G~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~   71 (229)
T PF00977_consen    6 IDLKNGRVVR-----------LVK---GDRFSETVYSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKE   71 (229)
T ss_dssp             EEEETTEEEE-----------EST---TCCSCEECECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEE-----------CCC---eecceeeEECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhc
Confidence            7999998871           121   1224556778899999999999999999432 232 234   44677888888


Q ss_pred             CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC---------ccc--eeeCCCC-----CHHh
Q psy11600        112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM---------KVG--LAIKPKT-----PVDV  170 (277)
Q Consensus       112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~---------~~g--~~i~p~t-----~~~~  170 (277)
                      +..++.+     -.+-++.+.++||+.+.+..++.+++.-+.+..+..|.         +.|  +..+...     ++..
T Consensus        72 ~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~  151 (229)
T PF00977_consen   72 TGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEE  151 (229)
T ss_dssp             SSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHH
T ss_pred             CCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHH
Confidence            7777776     46677888999999999988732233334455555443         233  2232222     2334


Q ss_pred             HHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccC
Q psy11600        171 IAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLT  234 (277)
Q Consensus       171 i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gp  234 (277)
                      +.+.+..  +.-++++.+.-....+.+..++++++.   +.. +..+..-||| +.+-+..+.+.|.
T Consensus       152 ~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~---~~~-~~~viasGGv~~~~Dl~~l~~~G~  214 (229)
T PF00977_consen  152 FAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLA---EAV-NIPVIASGGVRSLEDLRELKKAGI  214 (229)
T ss_dssp             HHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHH---HHH-SSEEEEESS--SHHHHHHHHHTTE
T ss_pred             HHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHH---HHc-CCCEEEecCCCCHHHHHHHHHCCC
Confidence            4444444  466788888876555555555554443   333 6788899999 5566666665554

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.62  E-value=0.029  Score=49.18  Aligned_cols=114  Identities=12%  Similarity=0.048  Sum_probs=79.8

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e   96 (277)
                      ..++.+..+..++.|++++|+=--|+.|-.    +.+.++.+|+. .++|+.+.=.+.++ .+++.+.++|+|.+  |+.
T Consensus        30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g----~~~~~~~i~~~-v~iPi~~~~~i~~~-~~v~~~~~~Gad~v--~l~  101 (217)
T cd00331          30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQG----SLEDLRAVREA-VSLPVLRKDFIIDP-YQIYEARAAGADAV--LLI  101 (217)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCccccCC----CHHHHHHHHHh-cCCCEEECCeecCH-HHHHHHHHcCCCEE--EEe
Confidence            345777788888999999999888876642    44788899985 78898876666666 47999999999999  655


Q ss_pred             CCCCCHHHHHHHHhh----CCCc-ccc-hhhhhHHHHhcCCCeEEeec
Q psy11600         97 PVDNVPQVIRQIKEA----GMKV-GQV-LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        97 ~~d~g~~~i~~i~~~----~~~~-~d~-p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..+..+..++.+.+.    .... .++ ..+-++...+.|++++.++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~  149 (217)
T cd00331         102 VAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINN  149 (217)
T ss_pred             eccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeC
Confidence            544444444444332    2221 122 34447778888999998873

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=96.60  E-value=0.11  Score=46.77  Aligned_cols=165  Identities=10%  Similarity=0.064  Sum_probs=100.2

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC------CHHHHHHHHh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN------VPQVIRQIKE  110 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~------g~~~i~~i~~  110 (277)
                      +|++||..|.-..+-.          .+     .-...+|.+.++.+.+.|++++  |++-.|+      ...+|+++.+
T Consensus         9 IDl~~G~vVrl~~G~~----------~~-----~~~y~~p~~~a~~~~~~g~~~l--hivDLd~a~g~~~n~~~i~~i~~   71 (243)
T TIGR01919         9 VDVNGGAAVRLQQGAG----------GS-----KTYYGSLESAAKWWEQGGAEWI--HLVDLDAAFGGGNNEMMLEEVVK   71 (243)
T ss_pred             EEEECCEEEEeecCCC----------CC-----ceecCCHHHHHHHHHhCCCeEE--EEEECCCCCCCcchHHHHHHHHH
Confidence            8999999885322210          01     1123478888888999999999  7665443      4578888888


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC-----------------CCCCH
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK-----------------PKTPV  168 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~-----------------p~t~~  168 (277)
                      .+..|+.+     -.+-++.+.++||+.+.+-.++.+++.-+.+..+..|-+.-+++-                 .+..+
T Consensus        72 ~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~  151 (243)
T TIGR01919        72 LLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDL  151 (243)
T ss_pred             HCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcH
Confidence            87777766     566778888899999999877444444444555554433222221                 12222


Q ss_pred             HhHHHHHhhc--CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        169 DVIAEYIESA--DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       169 ~~i~~~i~~~--d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      ..+.+.+...  .-+++..++-.-..+-+.-++++++   ++. .+..+..-||+.
T Consensus       152 ~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l---~~~-~~~pviasGGv~  203 (243)
T TIGR01919       152 EVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVV---AAR-TDAIVAASGGSS  203 (243)
T ss_pred             HHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHH---Hhh-CCCCEEEECCcC
Confidence            3333334443  5677777776443344444444443   332 456788888886

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK07094 biotin synthase; Provisional

Probab=96.52  E-value=0.057  Score=50.20  Aligned_cols=89  Identities=10%  Similarity=0.108  Sum_probs=54.2

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccc-cccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGT-FVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~-fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      +...+-++++.+.+.|++.+++  ..|. +.-+...=.++++.+++. +++.+.+++.. ...+.++.+.++|++.+.+-
T Consensus        71 s~eei~~~~~~~~~~g~~~i~l--~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~g~-~~~e~l~~Lk~aG~~~v~~g  146 (323)
T PRK07094         71 SPEEILECAKKAYELGYRTIVL--QSGEDPYYTDEKIADIIKEIKKE-LDVAITLSLGE-RSYEEYKAWKEAGADRYLLR  146 (323)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE--ecCCCCCCCHHHHHHHHHHHHcc-CCceEEEecCC-CCHHHHHHHHHcCCCEEEec
Confidence            4455667778888889999665  4443 211111123566677764 55544443322 23567899999999999665


Q ss_pred             ccCCCCCHHHHHHHHh
Q psy11600         95 VEPVDNVPQVIRQIKE  110 (277)
Q Consensus        95 ~e~~d~g~~~i~~i~~  110 (277)
                      +|+.+  +.+.+.+++
T Consensus       147 lEs~~--~~~~~~i~~  160 (323)
T PRK07094        147 HETAD--KELYAKLHP  160 (323)
T ss_pred             cccCC--HHHHHHhCC
Confidence            66544  666666654

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.51  E-value=0.22  Score=44.09  Aligned_cols=171  Identities=12%  Similarity=0.067  Sum_probs=107.0

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-c-ccc------hhhhhH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-V-GQV------LQDWIE  124 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~-~d~------p~~~i~  124 (277)
                      ++++.|++. +=+++.-.--..+....++.+.+.|...+-+=+. ..+..+.|+.+++.... | +-+      -.+-++
T Consensus         5 ~~~~~l~~~-~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~-~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~   82 (213)
T PRK06552          5 EILTKLKAN-GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYT-NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR   82 (213)
T ss_pred             HHHHHHHHC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC-CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence            355666653 4444444333333444578888899998755554 24467778888765421 2 111      456779


Q ss_pred             HHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC-CHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhh
Q psy11600        125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT-PVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPK  202 (277)
Q Consensus       125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~k  202 (277)
                      ...++||+++-=..    ..+++++..++.    ++-.-||+ +.+++.... ..+|++-   +-|...   +=   .+-
T Consensus        83 ~a~~aGA~FivsP~----~~~~v~~~~~~~----~i~~iPG~~T~~E~~~A~~~Gad~vk---lFPa~~---~G---~~~  145 (213)
T PRK06552         83 LAILAGAQFIVSPS----FNRETAKICNLY----QIPYLPGCMTVTEIVTALEAGSEIVK---LFPGST---LG---PSF  145 (213)
T ss_pred             HHHHcCCCEEECCC----CCHHHHHHHHHc----CCCEECCcCCHHHHHHHHHcCCCEEE---ECCccc---CC---HHH
Confidence            99999999765321    235677777764    56666774 334444443 3456554   344221   11   334


Q ss_pred             HHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600        203 VKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       203 I~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      ++.++..++++.+..-|||+.+|+.++.++|++.   ||..+.
T Consensus       146 ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~  188 (213)
T PRK06552        146 IKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNK  188 (213)
T ss_pred             HHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhC
Confidence            6666777888999999999999999999999775   555544

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=96.51  E-value=0.15  Score=45.01  Aligned_cols=182  Identities=16%  Similarity=0.146  Sum_probs=104.0

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHHh
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIKE  110 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~~  110 (277)
                      -+|+++|..|.-. =|.      +..       -+.+..+|.+.++.+.+.|++.+++. .+.. .+   ..++++.+++
T Consensus         4 ~id~~~g~~v~~~-~G~------~~~-------~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~   69 (230)
T TIGR00007         4 AIDIKDGKCVRLY-QGD------YDK-------ETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVR   69 (230)
T ss_pred             EEEeeCCEEEEee-ccc------cCc-------ceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHH
Confidence            4889998877321 011      111       12256799999999999999999653 1222 22   3478999999


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeC---------------CCCCHH
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIK---------------PKTPVD  169 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~---------------p~t~~~  169 (277)
                      .+..|+.+     -.+-++.+.++||+.+.+-.++.+++..+.+..++.|.+ .-+.+.               ...+++
T Consensus        70 ~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~  149 (230)
T TIGR00007        70 ETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEE  149 (230)
T ss_pred             hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHH
Confidence            88777765     355667888899999988755333455566667776522 122111               112233


Q ss_pred             hHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600        170 VIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG  235 (277)
Q Consensus       170 ~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg  235 (277)
                      .+..+.+. ++.+++..++.....+...   ++.++++++. .++.+.+-||+.- +.+..+.+.|++
T Consensus       150 ~~~~~~~~g~~~ii~~~~~~~g~~~g~~---~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gad  213 (230)
T TIGR00007       150 LAKRLEELGLEGIIYTDISRDGTLSGPN---FELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVY  213 (230)
T ss_pred             HHHHHHhCCCCEEEEEeecCCCCcCCCC---HHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCC
Confidence            23333332 5666767676542222222   3344444443 3466777788763 234444444444

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=96.49  E-value=0.14  Score=45.97  Aligned_cols=174  Identities=11%  Similarity=0.105  Sum_probs=103.0

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccCCCC---CHHHHHHHHhh
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDN---VPQVIRQIKEA  111 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~~d~---g~~~i~~i~~~  111 (277)
                      -+|+++|..|.-..+-       +..        .....||.+.++.+.+.|++++|+ .++...+   ...+|+++.+.
T Consensus         9 ~idl~~G~~V~~~~g~-------~~~--------~~~~~dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~   73 (241)
T PRK14024          9 AVDVVDGQAVRLVQGE-------AGS--------ETSYGSPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGK   73 (241)
T ss_pred             EEEeECCEEEEeeccc-------ccC--------ceECCCHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHH
Confidence            3899999888432221       111        112459999999999999999932 1232222   45789999888


Q ss_pred             CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--C-----------CCHHhHHH
Q psy11600        112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--K-----------TPVDVIAE  173 (277)
Q Consensus       112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~-----------t~~~~i~~  173 (277)
                      ...|+.+     -.+-++.+..+||+.+.+-.+.-++++-+.+.++..+.+..+++..  +           ..+..+.+
T Consensus        74 ~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~  153 (241)
T PRK14024         74 LDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLE  153 (241)
T ss_pred             cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHH
Confidence            8777766     4667888889999999988764444444555565554333222221  1           11122233


Q ss_pred             HHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHH
Q psy11600        174 YIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  230 (277)
Q Consensus       174 ~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~  230 (277)
                      .+.+  ++.++++.+......+.+.   ++.++++++. ..+.+..-||+.  |.+.+.
T Consensus       154 ~l~~~G~~~iiv~~~~~~g~~~G~d---~~~i~~i~~~-~~ipviasGGi~--s~~D~~  206 (241)
T PRK14024        154 RLDSAGCSRYVVTDVTKDGTLTGPN---LELLREVCAR-TDAPVVASGGVS--SLDDLR  206 (241)
T ss_pred             HHHhcCCCEEEEEeecCCCCccCCC---HHHHHHHHhh-CCCCEEEeCCCC--CHHHHH
Confidence            3333  4677888887743333332   3444455443 346777888885  444443

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.023  Score=50.24  Aligned_cols=154  Identities=21%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             cCcHHhHHHHHhcC--CCeEEEeccCCC-----CCHHHHHHHHhhCCC-cc--cc-----hhhhhHHHHhcCCCeEEeec
Q psy11600         74 QNPQQWIEPMADAN--VDQYTFHVEPVD-----NVPQVIRQIKEAGMK-VG--QV-----LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        74 ~~p~~~i~~l~~ag--~d~i~~H~e~~d-----~g~~~i~~i~~~~~~-~~--d~-----p~~~i~~~~~~g~d~it~H~  138 (277)
                      .++++-++...+.+  +|++    |+.+     .|.+.|+.+|+.... ++  |+     =.-..+...++|||++|+=-
T Consensus        13 ~~l~~Ai~~a~~v~~~~dii----EvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g   88 (217)
T COG0269          13 LDLEEAIEIAEEVADYVDII----EVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLG   88 (217)
T ss_pred             cCHHHHHHHHHHhhhcceEE----EeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEe
Confidence            45555555554442  4443    5543     388999999998633 22  33     45677888999999999853


Q ss_pred             CCCC-ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600        139 EPVD-NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       139 E~~~-~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                      =+.. +....++..++.|    ..+.              +|    |.-+. +        ..++.+++.+..++.-+. 
T Consensus        89 ~A~~~TI~~~i~~A~~~~----~~v~--------------iD----l~~~~-~--------~~~~~~~l~~~gvd~~~~-  136 (217)
T COG0269          89 AADDATIKKAIKVAKEYG----KEVQ--------------ID----LIGVW-D--------PEQRAKWLKELGVDQVIL-  136 (217)
T ss_pred             cCCHHHHHHHHHHHHHcC----CeEE--------------EE----eecCC-C--------HHHHHHHHHHhCCCEEEE-
Confidence            2100 2222333333322    1111              11    11111 1        134455555433332111 


Q ss_pred             eCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        218 DGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       218 dGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ==|+..++           .|..+-.+.+++++++....  ..+.|-|||++++++.+.
T Consensus       137 H~g~D~q~-----------~G~~~~~~~l~~ik~~~~~g--~~vAVaGGI~~~~i~~~~  182 (217)
T COG0269         137 HRGRDAQA-----------AGKSWGEDDLEKIKKLSDLG--AKVAVAGGITPEDIPLFK  182 (217)
T ss_pred             EecccHhh-----------cCCCccHHHHHHHHHhhccC--ceEEEecCCCHHHHHHHh
Confidence            00111111           35555456677787777553  789999999999998775

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.076  Score=46.88  Aligned_cols=147  Identities=23%  Similarity=0.338  Sum_probs=98.4

Q ss_pred             hHHHHHhcCCCeEEEeccCC-CC--CHHHHHHHHhhCC--Ccccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         79 WIEPMADANVDQYTFHVEPV-DN--VPQVIRQIKEAGM--KVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~-d~--g~~~i~~i~~~~~--~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      .+....++|+|++-|=++.. .-  .+...+.+...-.  ..+-+     ++++.+...+.+.|.|-+|-+   .....+
T Consensus        14 da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~---e~~~~~   90 (208)
T COG0135          14 DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD---EDPEYI   90 (208)
T ss_pred             HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC---CCHHHH
Confidence            45677889999987665542 11  4555555555432  21211     566777788889999999986   455666


Q ss_pred             HHHHHh---CCccceeeCCCCCHHhHHHHHhhcCceEEEEec---CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        149 RQIKEA---GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE---PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       149 ~~I~~~---g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~---Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      +.++..   ...+-+.++.+..++....+...+|.+++=+-.   +|-.|+.|.-.++...      .....+.+.||+|
T Consensus        91 ~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~  164 (208)
T COG0135          91 DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGLN  164 (208)
T ss_pred             HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCCC
Confidence            777763   233445555544455666677788888876642   4677888876665554      2334588999999


Q ss_pred             cCcHHHHHHccC
Q psy11600        223 PNTIDECAKCLT  234 (277)
Q Consensus       223 ~~tv~~~~~~gp  234 (277)
                      .+|+.+..+.++
T Consensus       165 p~NV~~ai~~~~  176 (208)
T COG0135         165 PDNVAEAIALGP  176 (208)
T ss_pred             HHHHHHHHHhcC
Confidence            999999988777

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=96.45  E-value=0.033  Score=52.19  Aligned_cols=128  Identities=14%  Similarity=0.112  Sum_probs=89.9

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccC---------------CCCCHHHHHHHHhcCCCCeeeeee
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN---------------LTFGHPVVKCLRNKIPKAFFETHM   71 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~---------------~~~g~~~v~~l~~~~~~~~~d~Hl   71 (277)
                      .++++++..|...+.+..+.+++.|+|.  +|+-=|  +|+               -.+--++++++|+. .++|+.+-+
T Consensus        66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~--IdlN~g--CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d~pv~vKi  140 (321)
T PRK10415         66 IRTVQIAGSDPKEMADAARINVESGAQI--IDINMG--CPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VDVPVTLKI  140 (321)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCE--EEEeCC--CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cCCceEEEE
Confidence            3568899999999999888888888887  665433  332               12223556777775 577777655


Q ss_pred             ecc------CcHHhHHHHHhcCCCeEEEeccCCC------CCHHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCe
Q psy11600         72 MVQ------NPQQWIEPMADANVDQYTFHVEPVD------NVPQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQ  133 (277)
Q Consensus        72 mv~------~p~~~i~~l~~ag~d~i~~H~e~~d------~g~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~  133 (277)
                      -..      +..+.++.+.++|++.+++|.-...      ...+.++++++.+..|+    ++  +++..+.+...|||.
T Consensus       141 R~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadg  220 (321)
T PRK10415        141 RTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADA  220 (321)
T ss_pred             EccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCE
Confidence            321      2345677889999999999965422      14678888888877665    23  777777777789999


Q ss_pred             EEeecC
Q psy11600        134 YTFHVE  139 (277)
Q Consensus       134 it~H~E  139 (277)
                      |.+--.
T Consensus       221 VmiGR~  226 (321)
T PRK10415        221 LMIGRA  226 (321)
T ss_pred             EEEChH
Confidence            988643

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=96.40  E-value=0.11  Score=45.82  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=82.0

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccC----cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc-cc-hhhhhHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQN----PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG-QV-LQDWIEPM  126 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~----p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~-d~-p~~~i~~~  126 (277)
                      +.++.+++. .+.++-+.+++.+    ..+.++.+.++|+|.+++|..   ..+.+++++++.....+ .+ +...+..+
T Consensus        43 ~~~~~i~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---~~~~~~~~~~~~~i~~i~~v~~~~~~~~~  118 (236)
T cd04730          43 AEIRKIRAL-TDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVIPTVTSVEEARKA  118 (236)
T ss_pred             HHHHHHHHh-cCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---CCHHHHHHHHHcCCEEEEeCCCHHHHHHH
Confidence            456777764 3456778888875    445688889999999977644   34667777766432221 11 34445666


Q ss_pred             HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL  206 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l  206 (277)
                      .+.|+|++.++.-                                               .++..+..+....++.++++
T Consensus       119 ~~~gad~i~~~~~-----------------------------------------------~~~G~~~~~~~~~~~~i~~i  151 (236)
T cd04730         119 EAAGADALVAQGA-----------------------------------------------EAGGHRGTFDIGTFALVPEV  151 (236)
T ss_pred             HHcCCCEEEEeCc-----------------------------------------------CCCCCCCccccCHHHHHHHH
Confidence            6677777766521                                               00000000001123334444


Q ss_pred             HhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc
Q psy11600        207 RENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       207 ~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~  242 (277)
                      ++.. ++-+.+.||++. +++.++.+.|++.   |+..+.
T Consensus       152 ~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~  190 (236)
T cd04730         152 RDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  190 (236)
T ss_pred             HHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence            4432 467889999987 8899988988885   554443

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=96.39  E-value=0.21  Score=44.46  Aligned_cols=180  Identities=18%  Similarity=0.240  Sum_probs=103.2

Q ss_pred             EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHH
Q psy11600         35 LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIK  109 (277)
Q Consensus        35 ~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~  109 (277)
                      ..+|+.+|..|.-.  +      .++    .     ....+|.+.++.+.++|++.+++|-=..++     -..++++++
T Consensus         5 ~~iD~~~g~~v~~~--~------~~~----~-----~~~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~   67 (243)
T cd04731           5 PCLDVKDGRVVKGV--N------FKN----L-----RDAGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVA   67 (243)
T ss_pred             EEEEEECCeEEEeE--c------ccc----c-----eeCCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHH
Confidence            45899999887332  1      111    0     146699999999999999999776222222     456788888


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCCC-----------------C
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKPK-----------------T  166 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p~-----------------t  166 (277)
                      +....|+-.     -.+-++.+.+.|++.+.+-.+.-.++..+.+..++.+. +..+++..-                 +
T Consensus        68 ~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~  147 (243)
T cd04731          68 EEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT  147 (243)
T ss_pred             HhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceec
Confidence            877666544     33455666678999988865522233344455555542 223333210                 1


Q ss_pred             CHH--hHHHHHh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHc-cCC
Q psy11600        167 PVD--VIAEYIE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKC-LTG  235 (277)
Q Consensus       167 ~~~--~i~~~i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~-gpg  235 (277)
                      ..+  .+.+.+.  .+|.+++..+......+.+..++   ++++++. ..+.+..-||++ .+.+..+.+. |.+
T Consensus       148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~---i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~d  218 (243)
T cd04731         148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLEL---IRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGAD  218 (243)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHH---HHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCC
Confidence            111  2223333  35777776666533333333333   3444332 257788899995 5567766665 664

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=96.39  E-value=0.033  Score=51.41  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=83.3

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcC-CCEEEEecc-----c-c-ccccCCCCCHHHHHHHHhcCCCCeeeeeeec--cC
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSG-ADYLHLDVM-----D-G-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMV--QN   75 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~-~~~~h~Dim-----D-g-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv--~~   75 (277)
                      ..+.+||...+...+.+..+++++.| +|.+=+-+.     . | .+..+..+-.++++++|+. .++|+.+.+-.  .+
T Consensus        92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~  170 (301)
T PRK07259         92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVKLTPNVTD  170 (301)
T ss_pred             CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEEcCCCchh
Confidence            45789999999999999999999998 999544331     1 1 1111222346778888886 58888887752  24


Q ss_pred             cHHhHHHHHhcCCCeEEEec-------cCCC---------C----------CHHHHHHHHhhCCCcccc------hhhhh
Q psy11600         76 PQQWIEPMADANVDQYTFHV-------EPVD---------N----------VPQVIRQIKEAGMKVGQV------LQDWI  123 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~-------e~~d---------~----------g~~~i~~i~~~~~~~~d~------p~~~i  123 (277)
                      ..+.++.+.++|+|.++++-       +...         +          ....++++++....|+-.      +++..
T Consensus       171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~  250 (301)
T PRK07259        171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAI  250 (301)
T ss_pred             HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence            44567888899999997631       1110         1          245677777766554422      55555


Q ss_pred             HHHHhcCCCeEEe
Q psy11600        124 EPMADANVDQYTF  136 (277)
Q Consensus       124 ~~~~~~g~d~it~  136 (277)
                      +.+ .+|||.|.+
T Consensus       251 ~~l-~aGAd~V~i  262 (301)
T PRK07259        251 EFI-MAGASAVQV  262 (301)
T ss_pred             HHH-HcCCCceeE
Confidence            555 477777665

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.38  E-value=0.071  Score=48.72  Aligned_cols=84  Identities=14%  Similarity=0.077  Sum_probs=62.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC----------CHHHHHHHHhcCCCCeeeeeeeccC
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF----------GHPVVKCLRNKIPKAFFETHMMVQN   75 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~----------g~~~v~~l~~~~~~~~~d~Hlmv~~   75 (277)
                      ..+.+||...+...+.+..+.+++.|+|.+=+.+-    +||...          --++++++|+. .++|+.+-+-...
T Consensus        99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~----cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~  173 (289)
T cd02810          99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLS----CPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYF  173 (289)
T ss_pred             CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcC----CCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCC
Confidence            45788999888889999999999999998655553    444332          12468888876 4778877766543


Q ss_pred             ----cHHhHHHHHhcCCCeEEEe
Q psy11600         76 ----PQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        76 ----p~~~i~~l~~ag~d~i~~H   94 (277)
                          ..+.++.+.++|+|.+++|
T Consensus       174 ~~~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         174 DLEDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEE
Confidence                3456788889999999988

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=96.37  E-value=0.054  Score=49.77  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=81.6

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccc-------cccccCCCCCHHHHHHHHhcCCCCeeeeeeec--cCc
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMD-------GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV--QNP   76 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD-------g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv--~~p   76 (277)
                      ..+.+||...+...+.+..+++++.|+|.+=+-+.-       ..|..+..+-.++++++|+. .++|+.+-+=.  .+.
T Consensus        90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~~~~~  168 (296)
T cd04740          90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPNVTDI  168 (296)
T ss_pred             CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCCchhH
Confidence            457889998899999999999999999994443321       11111222234678889885 57888876522  124


Q ss_pred             HHhHHHHHhcCCCeEEEe---------ccCCC-------C----------CHHHHHHHHhhCCCcccc------hhhhhH
Q psy11600         77 QQWIEPMADANVDQYTFH---------VEPVD-------N----------VPQVIRQIKEAGMKVGQV------LQDWIE  124 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H---------~e~~d-------~----------g~~~i~~i~~~~~~~~d~------p~~~i~  124 (277)
                      .+.++.+.++|+|.++++         .+...       +          ....++.+++....++-.      |++..+
T Consensus       169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~  248 (296)
T cd04740         169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALE  248 (296)
T ss_pred             HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence            455777889999998763         22100       1          126677777766544321      555555


Q ss_pred             HHHhcCCCeEEe
Q psy11600        125 PMADANVDQYTF  136 (277)
Q Consensus       125 ~~~~~g~d~it~  136 (277)
                      .+ ++|||.|.+
T Consensus       249 ~l-~~GAd~V~i  259 (296)
T cd04740         249 FL-MAGASAVQV  259 (296)
T ss_pred             HH-HcCCCEEEE
Confidence            55 478887776

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.36  E-value=0.074  Score=46.76  Aligned_cols=167  Identities=12%  Similarity=0.106  Sum_probs=97.7

Q ss_pred             CCeeeeeeeccC-------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc------ch---------hh
Q psy11600         64 KAFFETHMMVQN-------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ------VL---------QD  121 (277)
Q Consensus        64 ~~~~d~Hlmv~~-------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d------~p---------~~  121 (277)
                      .+.++|.+.-..       +.+..+.+.++|+..+.+      +.+..++.+|+.+..|+-      .+         ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~------~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~   83 (219)
T cd04729          10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA------NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIE   83 (219)
T ss_pred             CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc------CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHH
Confidence            566666665443       344677788889987753      567889999987655542      11         22


Q ss_pred             hhHHHHhcCCCeEEeecC----CC-CChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecC-CCCCch
Q psy11600        122 WIEPMADANVDQYTFHVE----PV-DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEP-GFGGQK  194 (277)
Q Consensus       122 ~i~~~~~~g~d~it~H~E----~~-~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~P-gt~gq~  194 (277)
                      .++..+++|+|.|.+-.-    |. ....++++.+++.| ..-+...+. +.+....... .+|++   .+++ |+.+..
T Consensus        84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~-t~~ea~~a~~~G~d~i---~~~~~g~t~~~  158 (219)
T cd04729          84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS-TLEEALNAAKLGFDII---GTTLSGYTEET  158 (219)
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC-CHHHHHHHHHcCCCEE---EccCccccccc
Confidence            678889999999888421    11 14556777777766 222223333 3343333222 23443   2332 221111


Q ss_pred             --hhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCcccc
Q psy11600        195 --FMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       195 --~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                        .....++-++.+++.. ++.+.+.||| +.+++.++.+.|++.   |+..+.
T Consensus       159 ~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~  211 (219)
T cd04729         159 AKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR  211 (219)
T ss_pred             cCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence              1112234556666544 5788999999 688999999998875   555444

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=96.36  E-value=0.096  Score=46.08  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=97.0

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc-----------c---h-hhhhHHHHhcCCCeEEeec--
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ-----------V---L-QDWIEPMADANVDQYTFHV--  138 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d-----------~---p-~~~i~~~~~~g~d~it~H~--  138 (277)
                      +.+..+.+.++|+..+++      .++..++.+|+.+..|+-           +   + .++++...++|||.|++=.  
T Consensus        25 ~~~~a~a~~~~G~~~~~~------~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~   98 (221)
T PRK01130         25 MAAMALAAVQGGAVGIRA------NGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATL   98 (221)
T ss_pred             HHHHHHHHHHCCCeEEEc------CCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCC
Confidence            445677788889988743      248899999998766642           1   2 3478999999999888622  


Q ss_pred             ------CCCCChHHHHHHHHH-hCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecC-CCCCc--hhhhhhhhhHHHHH
Q psy11600        139 ------EPVDNVPQVIRQIKE-AGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEP-GFGGQ--KFMQDMMPKVKWLR  207 (277)
Q Consensus       139 ------E~~~~~~~~~~~I~~-~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~P-gt~gq--~~~~~~l~kI~~l~  207 (277)
                            |   ...++++.+++ .++....   +.++.+.+....+. +|++.   ++. |..+.  ......++.+++++
T Consensus        99 ~~~p~~~---~~~~~i~~~~~~~~i~vi~---~v~t~ee~~~a~~~G~d~i~---~~~~g~t~~~~~~~~~~~~~i~~i~  169 (221)
T PRK01130         99 RPRPDGE---TLAELVKRIKEYPGQLLMA---DCSTLEEGLAAQKLGFDFIG---TTLSGYTEETKKPEEPDFALLKELL  169 (221)
T ss_pred             CCCCCCC---CHHHHHHHHHhCCCCeEEE---eCCCHHHHHHHHHcCCCEEE---cCCceeecCCCCCCCcCHHHHHHHH
Confidence                  3   45667777776 4433222   23455555443322 45432   221 11111  11222345566666


Q ss_pred             hhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCcccccCHHHHHHHHHh
Q psy11600        208 ENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFMQDMMPKVKWLRE  254 (277)
Q Consensus       208 ~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~~~~~~kI~~l~~  254 (277)
                      +.. ++.+.+.||+ +.+++..+.+.|++.   |+..+.+  .+..+++++
T Consensus       170 ~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~--~~~~~~~~~  217 (221)
T PRK01130        170 KAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP--EEITKWFVD  217 (221)
T ss_pred             HhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC--HHHHHHHHH
Confidence            654 5778899999 589999999999885   5554443  233344443

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=96.34  E-value=0.069  Score=44.51  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=83.8

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCC----C--CHHHHHHHHhhCCCcccc------hhhhh----HHHHhcCCCeEEeec
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVD----N--VPQVIRQIKEAGMKVGQV------LQDWI----EPMADANVDQYTFHV  138 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d----~--g~~~i~~i~~~~~~~~d~------p~~~i----~~~~~~g~d~it~H~  138 (277)
                      ++.++++.+.+.|++.+++-....+    .  ++..++.+++....++.+      +..++    +...++|+|.|.+|.
T Consensus        13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~   92 (200)
T cd04722          13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG   92 (200)
T ss_pred             HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence            4567788888999999844422111    1  223466666665544322      45555    478899999999998


Q ss_pred             CCCCChHH---HHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCcc
Q psy11600        139 EPVDNVPQ---VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN  214 (277)
Q Consensus       139 E~~~~~~~---~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~  214 (277)
                      +   ....   ..+.++++                    -+.. ++.++..+.+.+...        .. .+.+.  .++
T Consensus        93 ~---~~~~~~~~~~~~~~i--------------------~~~~~~~~v~~~~~~~~~~~--------~~-~~~~~--g~d  138 (200)
T cd04722          93 A---VGYLAREDLELIREL--------------------REAVPDVKVVVKLSPTGELA--------AA-AAEEA--GVD  138 (200)
T ss_pred             c---CCcHHHHHHHHHHHH--------------------HHhcCCceEEEEECCCCccc--------hh-hHHHc--CCC
Confidence            7   5422   33344332                    1222 566677777654321        10 02211  234


Q ss_pred             EEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCc-cCHHHhh
Q psy11600        215 IEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA  276 (277)
Q Consensus       215 i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~-~~~~~~~  276 (277)
                      ....++..           ++.+++...+.....++.+++ ..+..+.++|||+. +++.++.
T Consensus       139 ~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~  189 (200)
T cd04722         139 EVGLGNGG-----------GGGGGRDAVPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEAL  189 (200)
T ss_pred             EEEEcCCc-----------CCCCCccCchhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHH
Confidence            43322221           222222222222334444443 34677999999998 8887654

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.29  E-value=0.19  Score=44.96  Aligned_cols=176  Identities=14%  Similarity=0.121  Sum_probs=100.8

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCCCC---CHHHHHHHHhhC
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPVDN---VPQVIRQIKEAG  112 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~d~---g~~~i~~i~~~~  112 (277)
                      +|++||..|.-..+...       .        .....+|.+.++.+.+.|++++|+= ++...+   ..++|+++.+.+
T Consensus         8 iDl~~G~~Vr~~~G~~~-------~--------~~~~~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~   72 (232)
T PRK13586          8 IDISLGKAVKRIRGVKG-------T--------GLILGNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIG   72 (232)
T ss_pred             EEEECCEEEEeeecCCC-------C--------ceEcCCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhC
Confidence            89999998865444221       1        1224699999999999999999321 333222   457788887744


Q ss_pred             CCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCC--------------CCCHHhHH
Q psy11600        113 MKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKP--------------KTPVDVIA  172 (277)
Q Consensus       113 ~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p--------------~t~~~~i~  172 (277)
                      ..|+.+     -.+-++.+.+.||+.+.+-.++.++++-+.+..+..|- +.-+++-.              +.++..+.
T Consensus        73 ~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~  152 (232)
T PRK13586         73 FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGI  152 (232)
T ss_pred             CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHH
Confidence            346665     35567888889999999988855555545555555541 11122222              11223334


Q ss_pred             HHHhhc--CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHc
Q psy11600        173 EYIESA--DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKC  232 (277)
Q Consensus       173 ~~i~~~--d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~  232 (277)
                      +.+...  .-+++..+.-.-..+-+..++++++   .+. +.. +..-||+.- +-+..+.+.
T Consensus       153 ~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~---~~~-~~~-viasGGv~s~~Dl~~l~~~  210 (232)
T PRK13586        153 KKVNELELLGIIFTYISNEGTTKGIDYNVKDYA---RLI-RGL-KEYAGGVSSDADLEYLKNV  210 (232)
T ss_pred             HHHHhcCCCEEEEecccccccCcCcCHHHHHHH---HhC-CCC-EEEECCCCCHHHHHHHHHC
Confidence            444443  4566677766433344444444443   332 334 556788863 233334443

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=96.28  E-value=0.094  Score=49.28  Aligned_cols=163  Identities=10%  Similarity=0.101  Sum_probs=98.9

Q ss_pred             HHHHHHhcCCCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccC--C--C--C------CHHHHHHHHhhCCCcccc
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEP--V--D--N------VPQVIRQIKEAGMKVGQV  118 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~--~--d--~------g~~~i~~i~~~~~~~~d~  118 (277)
                      .++.+++. .+.|+-+.++-.++.++   ++.+.++|+|.+.+|+-.  .  +  +      -.++++++++.+..|+-+
T Consensus        92 ~i~~~~~~-~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~v  170 (334)
T PRK07565         92 LIRRAKEA-VDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAV  170 (334)
T ss_pred             HHHHHHHh-cCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEE
Confidence            34445543 57899999988888764   566777899999987532  1  1  1      235678888887766644


Q ss_pred             --------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600        119 --------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF  190 (277)
Q Consensus       119 --------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt  190 (277)
                              ..+.++.+.++|+|.|++|--    ....           .+-.....++                 ..-|.
T Consensus       171 Kl~p~~~~~~~~a~~l~~~G~dgI~~~n~----~~~~-----------~~d~~~~~~~-----------------~~~gl  218 (334)
T PRK07565        171 KLSPYFSNLANMAKRLDAAGADGLVLFNR----FYQP-----------DIDLETLEVV-----------------PGLVL  218 (334)
T ss_pred             EeCCCchhHHHHHHHHHHcCCCeEEEECC----cCCC-----------CcChhhcccc-----------------cCCCC
Confidence                    356678888999999999842    1100           0000000000                 02245


Q ss_pred             CCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600        191 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK  250 (277)
Q Consensus       191 ~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~  250 (277)
                      +|....+..++.+.++++.. ++.|.-.|||.- +.+.+++.+|++.   ++..+.  +...++|.
T Consensus       219 sg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~  283 (334)
T PRK07565        219 STPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTIL  283 (334)
T ss_pred             CCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHH
Confidence            55555666666677776544 577888899852 4455566788885   444444  34444443

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=96.27  E-value=0.077  Score=48.96  Aligned_cols=169  Identities=15%  Similarity=0.181  Sum_probs=97.9

Q ss_pred             HHHHHHHhcC--CCCeeeeeeeccCcHHh---HHHHHhcC-CCeEEEeccC---CC-C---------CHHHHHHHHhhCC
Q psy11600         53 PVVKCLRNKI--PKAFFETHMMVQNPQQW---IEPMADAN-VDQYTFHVEP---VD-N---------VPQVIRQIKEAGM  113 (277)
Q Consensus        53 ~~v~~l~~~~--~~~~~d~Hlmv~~p~~~---i~~l~~ag-~d~i~~H~e~---~d-~---------g~~~i~~i~~~~~  113 (277)
                      .+++.+++..  .+.|+-+.++-.+++++   .+.+.++| +|.+-+++-.   .. |         -.++++++|+.+.
T Consensus        78 ~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~  157 (301)
T PRK07259         78 AFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVK  157 (301)
T ss_pred             HHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence            3555555422  26789999998888887   45556778 9999774311   11 1         4667888888776


Q ss_pred             Ccccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE
Q psy11600        114 KVGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT  185 (277)
Q Consensus       114 ~~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma  185 (277)
                      .|+.+        ....++.+.++|+|.++++--    ....           ...+....+.      +.        .
T Consensus       158 ~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt----~~g~-----------~~~~~~~~~~------~~--------~  208 (301)
T PRK07259        158 VPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINT----LKGM-----------AIDIKTRKPI------LA--------N  208 (301)
T ss_pred             CCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcc----cccc-----------ccccccCcee------ec--------C
Confidence            56543        234567788899999887631    1100           0000000000      00        0


Q ss_pred             ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-ccCHHHHHHH
Q psy11600        186 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-MQDMMPKVKW  251 (277)
Q Consensus       186 v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~~~~~~kI~~  251 (277)
                      -..|.+|....+..++.+.++++.. ++.+...||| +.+.+.+++.+|++.   |.+.+ .|....|+++
T Consensus       209 ~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~  278 (301)
T PRK07259        209 VTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIE  278 (301)
T ss_pred             CcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHH
Confidence            0011222222223455566666543 5788899999 678888888899886   44433 3677777764

>PRK07695 transcriptional regulator TenI; Provisional

Probab=96.24  E-value=0.2  Score=43.36  Aligned_cols=182  Identities=12%  Similarity=0.090  Sum_probs=101.1

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      |+++-++.  ..+.+..+ +-+.|++++|+--=+...-    -=...++.+++.  ..+ ...+++.+.   .+...+.|
T Consensus         7 it~~~~~~--~~~~~~~~-~~~~g~~~iqlR~k~~~~~----~~~~~~~~l~~~--~~~-~~~liin~~---~~la~~~~   73 (201)
T PRK07695          7 ISNGHQSF--EELVAVAM-QIHSEVDYIHIREREKSAK----ELYEGVESLLKK--GVP-ASKLIINDR---VDIALLLN   73 (201)
T ss_pred             EECCcccc--chHHHHHH-HHhCCCCEEEEcCCCCCHH----HHHHHHHHHHHh--CCC-CCeEEEECH---HHHHHHcC
Confidence            56665443  24555555 5567999999984331111    112345566643  112 235777775   34556678


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCC-Ccc--cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGM-KVG--QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~-~~~--d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      ++.+  |+.-.+..   ++++|+... ..+  .+ ..+.+....++|+|+++++.-   ....               . 
T Consensus        74 ~~gv--Hl~~~~~~---~~~~r~~~~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v---~~t~---------------~-  129 (201)
T PRK07695         74 IHRV--QLGYRSFS---VRSVREKFPYLHVGYSVHSLEEAIQAEKNGADYVVYGHV---FPTD---------------C-  129 (201)
T ss_pred             CCEE--EeCcccCC---HHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECCC---CCCC---------------C-
Confidence            9988  65433321   345554321 111  11 233456666778888876431   1000               0 


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~  240 (277)
                                             .|+.++.     -++.++++.+.. ++.+...|||+..++.++.+.|+++   |+..
T Consensus       130 -----------------------k~~~~~~-----g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i  180 (201)
T PRK07695        130 -----------------------KKGVPAR-----GLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGI  180 (201)
T ss_pred             -----------------------CCCCCCC-----CHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHH
Confidence                                   1111110     023344444322 4778899999999999999999885   5555


Q ss_pred             cc-cCHHHHHHHHHhh
Q psy11600        241 FM-QDMMPKVKWLREN  255 (277)
Q Consensus       241 F~-~~~~~kI~~l~~~  255 (277)
                      +. ++..+..+++++.
T Consensus       181 ~~~~~p~~~~~~~~~~  196 (201)
T PRK07695        181 FSSANPYSKAKRYAES  196 (201)
T ss_pred             hcCCCHHHHHHHHHHH
Confidence            55 5778888877753

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=96.24  E-value=0.2  Score=45.09  Aligned_cols=193  Identities=15%  Similarity=0.183  Sum_probs=108.6

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHHh
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIKE  110 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~~  110 (277)
                      .+|++||..|.-..            +..    . ....+|.+.++.+.++|++++++| .+.. .+   ....++++++
T Consensus         9 ~idl~~g~~V~~~~------------~~~----~-~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~   71 (253)
T PRK02083          9 CLDVKDGRVVKGVN------------FVN----L-RDAGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAE   71 (253)
T ss_pred             EEEEECCEEEEeEE------------ecc----e-eecCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHH
Confidence            48999998884321            111    1 356799999999999999999887 2221 12   4567888888


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhC-Cccceee--CC------------------
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MKVGLAI--KP------------------  164 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g-~~~g~~i--~p------------------  164 (277)
                      ....|+..     -.+-++.+.+.||+.+.+-.+...++..+.+..+..| -+.-+++  +.                  
T Consensus        72 ~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~  151 (253)
T PRK02083         72 QVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPT  151 (253)
T ss_pred             hCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceec
Confidence            77666654     3445556666999999998752223434444444443 1112333  21                  


Q ss_pred             CCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHH-ccCCC--CC
Q psy11600        165 KTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAK-CLTGF--GG  238 (277)
Q Consensus       165 ~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~-~gpg~--gg  238 (277)
                      ..+...+.+.+..  ++.+++..+...+..|.+.   ++.++++.+.. .+.+..-||+.- +.+.++.+ .|.+.  .|
T Consensus       152 ~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg  227 (253)
T PRK02083        152 GLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAA  227 (253)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEh
Confidence            1122223333333  4566666666644344443   33344444433 467889999973 23444444 36542  44


Q ss_pred             cccc--cCHHHHH
Q psy11600        239 QKFM--QDMMPKV  249 (277)
Q Consensus       239 q~F~--~~~~~kI  249 (277)
                      ..|.  ...++.+
T Consensus       228 ~al~~~~~~~~~~  240 (253)
T PRK02083        228 SIFHFGEITIGEL  240 (253)
T ss_pred             HHHHcCCCCHHHH
Confidence            4444  3344443

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=96.15  E-value=0.17  Score=46.19  Aligned_cols=155  Identities=13%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEeecCCCCC--
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTFHVEPVDN--  143 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~H~E~~~~--  143 (277)
                      .+|.++++.+.+.|++|+  |+--.|+    ...+|++|++ +..++.+    =.+.++.+.++||+.|.+-.-+.++  
T Consensus        43 ~dP~~~A~~~~~~Ga~~l--HvVDLdgg~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~  119 (262)
T PLN02446         43 KSAAEFAEMYKRDGLTGG--HVIMLGADDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQ  119 (262)
T ss_pred             CCHHHHHHHHHHCCCCEE--EEEECCCCCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCC
Confidence            699999999999999999  6432233    4667888888 6667766    2388999999999999997542223  


Q ss_pred             --hHHHHHHHHHhCCc---c--------c---eeeCCC---C--CHHh-HHHHHh-hcCceEEEEecCCCCCchhhhhhh
Q psy11600        144 --VPQVIRQIKEAGMK---V--------G---LAIKPK---T--PVDV-IAEYIE-SADLVLIMTVEPGFGGQKFMQDMM  200 (277)
Q Consensus       144 --~~~~~~~I~~~g~~---~--------g---~~i~p~---t--~~~~-i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l  200 (277)
                        +.-+.+++++.|-.   .        |   ++++-.   |  .+.. +..+.. .++-++.-.++-+-..+-+.-+++
T Consensus       120 ~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~  199 (262)
T PLN02446        120 IDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELV  199 (262)
T ss_pred             CCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHH
Confidence              44444555655411   1        1   222211   1  2222 233322 256666666666433333333333


Q ss_pred             hhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCC
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTG  235 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg  235 (277)
                      +++   .+. ..+.+...||+.- +-+..+.+.|.|
T Consensus       200 ~~l---~~~-~~ipVIASGGv~sleDi~~L~~~g~g  231 (262)
T PLN02446        200 ALL---GEH-SPIPVTYAGGVRSLDDLERVKVAGGG  231 (262)
T ss_pred             HHH---Hhh-CCCCEEEECCCCCHHHHHHHHHcCCC
Confidence            333   332 4567888888852 223334444433

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.15  E-value=0.25  Score=45.54  Aligned_cols=204  Identities=13%  Similarity=0.029  Sum_probs=119.1

Q ss_pred             CcccHHHHHHHHHHcCCCEEE------Eeccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600         16 DLSNLHSESQNLLDSGADYLH------LDVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANV   88 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h------~DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~   88 (277)
                      |..|- ++-+..+++|+=.+-      -||-- |...  =.=+|+.|+++++. .++|+-.-....+ ..+++.+.++|+
T Consensus        16 dv~~~-eqa~iae~aga~avm~le~~p~d~r~~ggv~--R~~~p~~I~~I~~~-V~iPVig~~kigh-~~Ea~~L~~~Gv   90 (287)
T TIGR00343        16 DVVNP-EQAKIAEEAGAVAVMALERVPADIRASGGVA--RMSDPKMIKEIMDA-VSIPVMAKVRIGH-FVEAQILEALGV   90 (287)
T ss_pred             EeCCH-HHHHHHHHcCceEEEeeccCchhhHhcCCee--ecCCHHHHHHHHHh-CCCCEEEEeeccH-HHHHHHHHHcCC
Confidence            44444 455677788775522      24332 3332  12389999999986 7999999888877 667889999999


Q ss_pred             CeEEEeccCC--CCCHHHHHHHHhhCCCcccch-hhhhHH--HHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         89 DQYTFHVEPV--DNVPQVIRQIKEAGMKVGQVL-QDWIEP--MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        89 d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~p-~~~i~~--~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      |+|  . ++.  .-..+++..+|+....++-+- ..+=+.  -.+.|+|+|.=..|+.+  .++.+..+...        
T Consensus        91 DiI--D-eTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gT--g~v~~av~hlr--------  157 (287)
T TIGR00343        91 DYI--D-ESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGT--GNIVEAVRHMR--------  157 (287)
T ss_pred             CEE--E-ccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCC--ccHHHHHHHHH--------
Confidence            999  3 222  124567777777654455432 122222  25779999988877433  23332222110        


Q ss_pred             CCCCHHhHHHHHhhcCce----EEE--E--ecCCCCCchhhhhhhhhHHHHHhhCCCccEE--EeCCC-CcCcHHHHHHc
Q psy11600        164 PKTPVDVIAEYIESADLV----LIM--T--VEPGFGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKC  232 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~v----l~m--a--v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~--vdGgV-~~~tv~~~~~~  232 (277)
                            -+.+.++.....    -++  +  ..|+          ++.++++++.. ++-+.  ..||| +..++..+++.
T Consensus       158 ------~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~mel  220 (287)
T TIGR00343       158 ------KINEEIRQIQNMLEEEDLAAVAKELRVP----------VELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQL  220 (287)
T ss_pred             ------HHHHHHHHHhcccchhHHhhhhcccCCC----------HHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHc
Confidence                  011111111000    000  0  1122          23455555432 34455  68999 99999999999


Q ss_pred             cCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        233 LTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       233 gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      |++.   |+..|. ++..+..+++++
T Consensus       221 GAdGVaVGSaI~ks~dP~~~akafv~  246 (287)
T TIGR00343       221 GADGVFVGSGIFKSSNPEKLAKAIVE  246 (287)
T ss_pred             CCCEEEEhHHhhcCCCHHHHHHHHHH
Confidence            9995   888887 466666666664

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.14  E-value=0.24  Score=45.86  Aligned_cols=172  Identities=15%  Similarity=0.210  Sum_probs=98.2

Q ss_pred             HHHHHhcCCCCeeeeeeecc-CcHHh---HHHHHhcCCCeEEEeccCCC-------C---------CHHHHHHHHhhCCC
Q psy11600         55 VKCLRNKIPKAFFETHMMVQ-NPQQW---IEPMADANVDQYTFHVEPVD-------N---------VPQVIRQIKEAGMK  114 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~-~p~~~---i~~l~~ag~d~i~~H~e~~d-------~---------g~~~i~~i~~~~~~  114 (277)
                      ++++++..++.|+-+.+.-. +++++   ++.+.++|+|.+.+-+-.-.       |         --++++++|+.+..
T Consensus        90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~  169 (299)
T cd02940          90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI  169 (299)
T ss_pred             HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence            44445544467888988887 88776   45555679999976544311       1         33456777777666


Q ss_pred             cccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe
Q psy11600        115 VGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV  186 (277)
Q Consensus       115 ~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav  186 (277)
                      |+.+        ..+.++.+.++|+|.|+++--    ..... .+.--+.+.-..+...|                   .
T Consensus       170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt----~~~~~-~id~~~~~~~~~~~~~~-------------------~  225 (299)
T cd02940         170 PVIAKLTPNITDIREIARAAKEGGADGVSAINT----VNSLM-GVDLDGTPPAPGVEGKT-------------------T  225 (299)
T ss_pred             CeEEECCCCchhHHHHHHHHHHcCCCEEEEecc----ccccc-ccccccCCccccccCCC-------------------C
Confidence            6654        245777788899999998631    11100 00000000000000000                   0


Q ss_pred             cCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600        187 EPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK  250 (277)
Q Consensus       187 ~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~  250 (277)
                      .=|++|....+-.++.|.++++.. +++.+...|||.- +.+.+++.+|++.   +...+.  +....+|.
T Consensus       226 ~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~  296 (299)
T cd02940         226 YGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMC  296 (299)
T ss_pred             cCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHh
Confidence            114555444455677788887766 4789999999963 3444556688885   555444  45555543

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=96.11  E-value=0.39  Score=43.30  Aligned_cols=93  Identities=22%  Similarity=0.238  Sum_probs=74.6

Q ss_pred             eeeccCcHHhHHHHHhcCCCeEEEeccCCCC-------CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600         70 HMMVQNPQQWIEPMADANVDQYTFHVEPVDN-------VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        70 Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-------g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H  137 (277)
                      ..+..+|.+..+.+.+.|+.|+  |+-=.||       ....|+.|.+.+..++.+     -.+.++.+.++|++.+.+-
T Consensus        27 ~~y~~~P~~~a~~~~~~Ga~~l--HlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiG  104 (241)
T COG0106          27 TVYSDDPLEVAKKWSDQGAEWL--HLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIG  104 (241)
T ss_pred             eEecCCHHHHHHHHHHcCCcEE--EEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEe
Confidence            4667799999999999999999  7543343       457888888888888887     6889999999999999988


Q ss_pred             cCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600        138 VEPVDNVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus       138 ~E~~~~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                      .=|.+++..+.+++++.|-+.-+++.+
T Consensus       105 t~av~~p~~v~~~~~~~g~rivv~lD~  131 (241)
T COG0106         105 TAAVKNPDLVKELCEEYGDRIVVALDA  131 (241)
T ss_pred             cceecCHHHHHHHHHHcCCcEEEEEEc
Confidence            766668888888888887665555543

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=96.10  E-value=0.23  Score=46.63  Aligned_cols=155  Identities=12%  Similarity=0.091  Sum_probs=96.1

Q ss_pred             CCCeeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCC--CC---C-------HHHHHHHHhhCCCcccc--------h
Q psy11600         63 PKAFFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPV--DN---V-------PQVIRQIKEAGMKVGQV--------L  119 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~--d~---g-------~~~i~~i~~~~~~~~d~--------p  119 (277)
                      .+.|+-+.++-.++++   +++.+.++|+|.+-+|+-..  +.   |       .++++++|+.++.|+-+        .
T Consensus        98 ~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~  177 (325)
T cd04739          98 VSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSAL  177 (325)
T ss_pred             cCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCH
Confidence            4788999998877764   46677788999999987531  21   1       46788998887777654        2


Q ss_pred             hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhh
Q psy11600        120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDM  199 (277)
Q Consensus       120 ~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~  199 (277)
                      ...++.+.++|+|.|++|--    ...             ..+...+.           .    .....|.+|....+..
T Consensus       178 ~~~a~~l~~~Gadgi~~~nt----~~~-------------~~id~~~~-----------~----~~~~~glSG~~~~~~a  225 (325)
T cd04739         178 AHMAKQLDAAGADGLVLFNR----FYQ-------------PDIDLETL-----------E----VVPNLLLSSPAEIRLP  225 (325)
T ss_pred             HHHHHHHHHcCCCeEEEEcC----cCC-------------CCcccccc-----------c----eecCCCcCCccchhHH
Confidence            45778889999999999852    110             00000000           0    0012344554455555


Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK  250 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~  250 (277)
                      ++-+.++++.. ++.|...|||.- +.+.+++.+|++.   |+..+.  +...++|.
T Consensus       226 l~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~  281 (325)
T cd04739         226 LRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLL  281 (325)
T ss_pred             HHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHH
Confidence            66666666533 688888999853 3344456688885   555444  44555544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=96.05  E-value=0.17  Score=46.75  Aligned_cols=205  Identities=12%  Similarity=0.027  Sum_probs=118.9

Q ss_pred             HHHHHHHHcCCCEEEE------eccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         22 SESQNLLDSGADYLHL------DVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~------DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      ++-+..+++|.+.+-+      |+.- |.-  +..=+|+.|+++|+. .++|+-.-....+ ..+++.+.++|+|+|  .
T Consensus        28 ~~a~iae~~g~~~v~~~~~~psd~~~~gg~--~Rm~~p~~I~aIk~~-V~iPVigk~Righ-~~Ea~~L~~~GvDiI--D  101 (293)
T PRK04180         28 EQAKIAEEAGAVAVMALERVPADIRAAGGV--ARMADPKMIEEIMDA-VSIPVMAKARIGH-FVEAQILEALGVDYI--D  101 (293)
T ss_pred             HHHHHHHHhChHHHHHccCCCchHhhcCCe--eecCCHHHHHHHHHh-CCCCeEEeehhhH-HHHHHHHHHcCCCEE--e
Confidence            4555667777666222      3222 422  245589999999986 7999988777766 667889999999999  3


Q ss_pred             ccCC--CCCHHHHHHHHhhCCCcccch-hhhhHH--HHhcCCCeEEeecCCCC-ChHHHHHHHHHhCCccceeeCCCCCH
Q psy11600         95 VEPV--DNVPQVIRQIKEAGMKVGQVL-QDWIEP--MADANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAIKPKTPV  168 (277)
Q Consensus        95 ~e~~--d~g~~~i~~i~~~~~~~~d~p-~~~i~~--~~~~g~d~it~H~E~~~-~~~~~~~~I~~~g~~~g~~i~p~t~~  168 (277)
                       ++.  .--.+++..+|+....++-+. ..+=+.  -.+.|+|+|.-.=|+++ +..+..+.+|.+.  .++..-.|..-
T Consensus       102 -~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~--~~i~~L~gyt~  178 (293)
T PRK04180        102 -ESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIN--GEIRRLTSMSE  178 (293)
T ss_pred             -ccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHH--HHHHHHhCCCH
Confidence             222  113367777777655555442 222222  36789999998866444 3333333333321  00000001000


Q ss_pred             HhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEE--EeCCC-CcCcHHHHHHccCCC---CCcccc
Q psy11600        169 DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       169 ~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~--vdGgV-~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      +....+.+.        ..|+          ++.++++++.. .+-+.  ..||| +...+..+++.|++.   |+..|.
T Consensus       179 ~~~~~~a~~--------~~~~----------~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k  239 (293)
T PRK04180        179 DELYTAAKE--------LQAP----------YELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK  239 (293)
T ss_pred             HHHHhhccc--------cCCC----------HHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence            000000000        1222          33455555533 24454  78999 999999999999985   888886


Q ss_pred             -cCHHHHHHHHHh
Q psy11600        243 -QDMMPKVKWLRE  254 (277)
Q Consensus       243 -~~~~~kI~~l~~  254 (277)
                       ++..+..+++++
T Consensus       240 s~dP~~~akafv~  252 (293)
T PRK04180        240 SGDPEKRARAIVE  252 (293)
T ss_pred             CCCHHHHHHHHHH
Confidence             466667776665

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=96.05  E-value=0.19  Score=44.02  Aligned_cols=153  Identities=21%  Similarity=0.270  Sum_probs=90.8

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      .+..+.++.+.+.|...+-+=+.. ....+.|+.+++.... .+   .+ -.+.++...++||+++-=..    ..++++
T Consensus        20 ~~a~~~~~al~~gGi~~iEiT~~t-~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----~~~~v~   94 (196)
T PF01081_consen   20 EDAVPIAEALIEGGIRAIEITLRT-PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----FDPEVI   94 (196)
T ss_dssp             GGHHHHHHHHHHTT--EEEEETTS-TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------HHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCC-ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----CCHHHH
Confidence            334446788888998877555443 3467778877766432 11   11 46688999999999765432    235777


Q ss_pred             HHHHHhCCccceeeCCC-CCHHhHHHHHh-hcCceEEEEecCCCC-CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600        149 RQIKEAGMKVGLAIKPK-TPVDVIAEYIE-SADLVLIMTVEPGFG-GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT  225 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~-t~~~~i~~~i~-~~d~vl~mav~Pgt~-gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t  225 (277)
                      +..++.    ++-.-|| .+.+++....+ -+++   +=+-|... |-      .+-++.++.-+|++.+..-|||+.++
T Consensus        95 ~~~~~~----~i~~iPG~~TptEi~~A~~~G~~~---vK~FPA~~~GG------~~~ik~l~~p~p~~~~~ptGGV~~~N  161 (196)
T PF01081_consen   95 EYAREY----GIPYIPGVMTPTEIMQALEAGADI---VKLFPAGALGG------PSYIKALRGPFPDLPFMPTGGVNPDN  161 (196)
T ss_dssp             HHHHHH----TSEEEEEESSHHHHHHHHHTT-SE---EEETTTTTTTH------HHHHHHHHTTTTT-EEEEBSS--TTT
T ss_pred             HHHHHc----CCcccCCcCCHHHHHHHHHCCCCE---EEEecchhcCc------HHHHHHHhccCCCCeEEEcCCCCHHH
Confidence            777775    4555565 23444444332 2333   23456431 10      22356666678899999999999999


Q ss_pred             HHHHHHccCCC---CCcccccC
Q psy11600        226 IDECAKCLTGF---GGQKFMQD  244 (277)
Q Consensus       226 v~~~~~~gpg~---ggq~F~~~  244 (277)
                      +.+..++|.-.   ||+.|.++
T Consensus       162 ~~~~l~ag~~~vg~Gs~L~~~~  183 (196)
T PF01081_consen  162 LAEYLKAGAVAVGGGSWLFPKD  183 (196)
T ss_dssp             HHHHHTSTTBSEEEESGGGSHH
T ss_pred             HHHHHhCCCEEEEECchhcCHH
Confidence            99999988775   66666554

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=95.99  E-value=0.32  Score=42.87  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             eeeccCcHHhHHHHHhcCCCeEEEec-cCC-CC---CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecC
Q psy11600         70 HMMVQNPQQWIEPMADANVDQYTFHV-EPV-DN---VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        70 Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~~-d~---g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +.+..+|.+.++.+.+.|++.+++.- +.. .+   ....++++++.+..|+.+     -.+-++.+.++||+.+.+-..
T Consensus        26 ~~~~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~  105 (233)
T PRK00748         26 TVYSDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA  105 (233)
T ss_pred             eEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence            44578999999999999999995542 221 12   456788888887777655     355677788899999988664


Q ss_pred             CCCChHHHHHHHHHhCCccceeeCC--------------CCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhH
Q psy11600        140 PVDNVPQVIRQIKEAGMKVGLAIKP--------------KTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKV  203 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~g~~i~p--------------~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI  203 (277)
                      .-+++..+.+..+..+.+.-+++..              ...+.++.+.+..  ++.++++.+++.-..+...   ++.+
T Consensus       106 ~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d---~~~i  182 (233)
T PRK00748        106 AVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPN---VEAT  182 (233)
T ss_pred             HHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCC---HHHH
Confidence            1112223444444433222233332              1122233333433  6777888787743222222   3344


Q ss_pred             HHHHhhCCCccEEEeCCCCc-CcHHHHHHcc
Q psy11600        204 KWLRENYPTLNIEVDGGVGP-NTIDECAKCL  233 (277)
Q Consensus       204 ~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~g  233 (277)
                      +++++.. .+.+..-||+.- +.+.++.+.|
T Consensus       183 ~~l~~~~-~ipvia~GGi~~~~di~~~~~~g  212 (233)
T PRK00748        183 RELAAAV-PIPVIASGGVSSLDDIKALKGLG  212 (233)
T ss_pred             HHHHHhC-CCCEEEeCCCCCHHHHHHHHHcC
Confidence            4554433 366777788753 3344444544

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=95.86  E-value=1  Score=41.26  Aligned_cols=178  Identities=16%  Similarity=0.272  Sum_probs=113.0

Q ss_pred             HHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHH
Q psy11600         55 VKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIR  106 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~  106 (277)
                      .+++++. .+.-+-.-+|..+|.-     .++.+.++|+|.+-+=+   |+ .||                   -.++++
T Consensus         8 F~~l~~~-~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~   86 (265)
T COG0159           8 FAQLKAE-NRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVE   86 (265)
T ss_pred             HHHHHHh-CCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            3445543 3444666677777653     36777889999884432   22 244                   456677


Q ss_pred             HHHhh-CCCcc-cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHH
Q psy11600        107 QIKEA-GMKVG-QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEY  174 (277)
Q Consensus       107 ~i~~~-~~~~~-d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~  174 (277)
                      .+|+. ...|+ .+          .++|++...++|+|.+.+-==|-+...++.+..++.|+..=.=+.|.|+-+.++..
T Consensus        87 ~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i  166 (265)
T COG0159          87 EIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKI  166 (265)
T ss_pred             HHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH
Confidence            77754 33343 22          58899999999999888742111133456677777777776677888998999999


Q ss_pred             Hhhc-CceEEEEecCCCCCchh-hhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCC
Q psy11600        175 IESA-DLVLIMTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTG  235 (277)
Q Consensus       175 i~~~-d~vl~mav~Pgt~gq~~-~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg  235 (277)
                      .+.. +++-.++.++-|+-+.- ...+-+.+++++++. ++-+.+==|| +.+++..+.++ ++
T Consensus       167 ~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-AD  228 (265)
T COG0159         167 AEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-AD  228 (265)
T ss_pred             HHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CC
Confidence            8877 88999998887765443 223556677777654 3333331122 44666666777 55

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=95.86  E-value=0.19  Score=43.12  Aligned_cols=51  Identities=12%  Similarity=0.027  Sum_probs=35.5

Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHH
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVK  250 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~  250 (277)
                      ++.++++.+..+++.+.+.||++.+++..+.+.|+++   |+..+. ++..+.++
T Consensus       140 ~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~  194 (196)
T TIGR00693       140 VELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAK  194 (196)
T ss_pred             HHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHH
Confidence            3445555554556779999999999999999998886   566665 34444433

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=95.85  E-value=0.26  Score=43.39  Aligned_cols=154  Identities=13%  Similarity=0.198  Sum_probs=97.6

Q ss_pred             eeccCcHH---hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHHHhcCCCeEEeecCCCC
Q psy11600         71 MMVQNPQQ---WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPMADANVDQYTFHVEPVD  142 (277)
Q Consensus        71 lmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~~~~g~d~it~H~E~~~  142 (277)
                      +-..++++   ..+.+.+.|...+-+-+.. ++..+.|+++++.... .+   .+ -.+-++..+++||+++-=..    
T Consensus        14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t-~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~----   88 (204)
T TIGR01182        14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT-PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG----   88 (204)
T ss_pred             EecCCHHHHHHHHHHHHHcCCCEEEEeCCC-ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC----
Confidence            34444444   4777888999988555533 4466778888765432 11   11 45568899999999873221    


Q ss_pred             ChHHHHHHHHHhCCccceeeCCC-CCHHhHHHHHh-hcCceEEEEecCCC--CCchhhhhhhhhHHHHHhhCCCccEEEe
Q psy11600        143 NVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIE-SADLVLIMTVEPGF--GGQKFMQDMMPKVKWLRENYPTLNIEVD  218 (277)
Q Consensus       143 ~~~~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~-~~d~vl~mav~Pgt--~gq~~~~~~l~kI~~l~~~~~~~~i~vd  218 (277)
                      ...++++..++.    |+-.-|| ...+++...++ -++.   +=+-|..  +|.       .-++.++.-+|++.+.--
T Consensus        89 ~~~~v~~~~~~~----~i~~iPG~~TptEi~~A~~~Ga~~---vKlFPA~~~GG~-------~yikal~~plp~i~~~pt  154 (204)
T TIGR01182        89 LTPELAKHAQDH----GIPIIPGVATPSEIMLALELGITA---LKLFPAEVSGGV-------KMLKALAGPFPQVRFCPT  154 (204)
T ss_pred             CCHHHHHHHHHc----CCcEECCCCCHHHHHHHHHCCCCE---EEECCchhcCCH-------HHHHHHhccCCCCcEEec
Confidence            235677777764    5666677 23444444332 2343   2345532  121       235666767899999999


Q ss_pred             CCCCcCcHHHHHHccCCC---CCccccc
Q psy11600        219 GGVGPNTIDECAKCLTGF---GGQKFMQ  243 (277)
Q Consensus       219 GgV~~~tv~~~~~~gpg~---ggq~F~~  243 (277)
                      |||+.+|+.+..++|...   |++.|..
T Consensus       155 GGV~~~N~~~~l~aGa~~vg~Gs~L~~~  182 (204)
T TIGR01182       155 GGINLANVRDYLAAPNVACGGGSWLVPK  182 (204)
T ss_pred             CCCCHHHHHHHHhCCCEEEEEChhhcCc
Confidence            999999999999988774   6677654

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=95.75  E-value=0.52  Score=42.51  Aligned_cols=180  Identities=16%  Similarity=0.185  Sum_probs=102.6

Q ss_pred             EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHH
Q psy11600         35 LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIK  109 (277)
Q Consensus        35 ~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~  109 (277)
                      .-+|+.||..|.-.           +. .+     ..+..+|.+.++.+.+.|+++++++ .+.. .+   ...+++.++
T Consensus         8 p~iD~~~G~~V~~~-----------~~-~~-----~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~   70 (254)
T TIGR00735         8 PCLDVRDGRVVKGV-----------QF-LN-----LRDAGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTA   70 (254)
T ss_pred             EEEEeECCEEEEeE-----------ee-cC-----ceECCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHH
Confidence            45899998877331           11 11     3446799999999999999999766 2211 11   456788888


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhC-CccceeeC--CC----------------
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MKVGLAIK--PK----------------  165 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g-~~~g~~i~--p~----------------  165 (277)
                      +.+..|+..     -.+-++.+.++||+.+.+-.+...++.-+.++.+..| .+.-+++.  .|                
T Consensus        71 ~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~  150 (254)
T TIGR00735        71 ETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGR  150 (254)
T ss_pred             HhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCc
Confidence            877767665     3445566677899999987763333333444445554 22233332  22                


Q ss_pred             ----CCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHcc-CC
Q psy11600        166 ----TPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCL-TG  235 (277)
Q Consensus       166 ----t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~g-pg  235 (277)
                          .....+.+.+.+  +|.+++..+...-..+.+.-++   ++++++. .++.+...||+.- +.+.++.+.| .+
T Consensus       151 ~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~---~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~d  224 (254)
T TIGR00735       151 ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLEL---TKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKAD  224 (254)
T ss_pred             ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHH---HHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence                112233333443  4666665555532222333233   3344433 3577888899874 3455555555 44

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=95.73  E-value=0.67  Score=40.95  Aligned_cols=165  Identities=14%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCC-CC---CHHHHHHHHhh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPV-DN---VPQVIRQIKEA  111 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~-d~---g~~~i~~i~~~  111 (277)
                      +|++||..|.-..+        +    +.     ....+|.+.++.+.+.|+++++++ ++.. .+   ...+++.+++.
T Consensus        10 iD~~~g~~V~~~~~--------~----~~-----~~~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~   72 (232)
T TIGR03572        10 LLLKDGRLVKTVQF--------K----DP-----RYIGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE   72 (232)
T ss_pred             EEEECCeEEEeecc--------C----CC-----eECCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHh
Confidence            89999988742211        1    11     114599999999999999988665 2221 11   56678999888


Q ss_pred             CCCcccc---h--hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc---cceeeCCC------------------
Q psy11600        112 GMKVGQV---L--QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK---VGLAIKPK------------------  165 (277)
Q Consensus       112 ~~~~~d~---p--~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~---~g~~i~p~------------------  165 (277)
                      +..|+.+   +  .+-++.+.+.|++.+.+-.+.-.++..+.+..+..+.+   ..+-++.+                  
T Consensus        73 ~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~  152 (232)
T TIGR03572        73 CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATG  152 (232)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCC
Confidence            8776655   2  33445577889999988765222333344445544322   11112221                  


Q ss_pred             CCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        166 TPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       166 t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      .+...+.+.+..  +|.+++..+.+.-..+.+.   ++-++++++.. .+.+..-||++
T Consensus       153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~---~~~~~~i~~~~-~ipvia~GGi~  207 (232)
T TIGR03572       153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGYD---LELIKTVSDAV-SIPVIALGGAG  207 (232)
T ss_pred             CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCC---HHHHHHHHhhC-CCCEEEECCCC
Confidence            111222233322  5777777765532222222   33344444432 46688888886

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=95.73  E-value=0.14  Score=43.71  Aligned_cols=79  Identities=14%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      |+|+-++  ..++.+.++.+.+.|++++|+-.=+..---   + .+.++.+++. .. ...+.+++.+.   .+...+.|
T Consensus         4 It~~~~~--~~~~~~~l~~~~~~gv~~v~lR~k~~~~~~---~-~~~a~~l~~~-~~-~~~~~liin~~---~~la~~~~   72 (180)
T PF02581_consen    4 ITDPRLC--GDDFLEQLEAALAAGVDLVQLREKDLSDEE---L-LELARRLAEL-CQ-KYGVPLIINDR---VDLALELG   72 (180)
T ss_dssp             EE-STTS--TCHHHHHHHHHHHTT-SEEEEE-SSS-HHH---H-HHHHHHHHHH-HH-HTTGCEEEES----HHHHHHCT
T ss_pred             EeCCchh--cchHHHHHHHHHHCCCcEEEEcCCCCCccH---H-HHHHHHHHHH-hh-cceEEEEecCC---HHHHHhcC
Confidence            5565555  556778898989999999999875411110   0 1223333322 10 12456666663   44566789


Q ss_pred             CCeEEEeccCCC
Q psy11600         88 VDQYTFHVEPVD   99 (277)
Q Consensus        88 ~d~i~~H~e~~d   99 (277)
                      +|.+  |+.-.+
T Consensus        73 ~dGv--Hl~~~~   82 (180)
T PF02581_consen   73 ADGV--HLGQSD   82 (180)
T ss_dssp             -SEE--EEBTTS
T ss_pred             CCEE--Eecccc
Confidence            9999  665444

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK06256 biotin synthase; Validated

Probab=95.68  E-value=0.31  Score=45.54  Aligned_cols=175  Identities=15%  Similarity=0.170  Sum_probs=90.8

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCC---CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY   91 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i   91 (277)
                      .+...+-++++.+.+.|+..++  +..|.+-|+..   .=.+.++.+++. +++.+.+++-.. ..+.++.+.++|++.+
T Consensus        91 ~s~eeI~~~~~~~~~~g~~~~~--l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l-~~e~l~~LkeaG~~~v  166 (336)
T PRK06256         91 LDIEELIEAAKEAIEEGAGTFC--IVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACLGLL-TEEQAERLKEAGVDRY  166 (336)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEE--EEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecCCcC-CHHHHHHHHHhCCCEE
Confidence            3555666677777778887654  33444434322   223567777765 555554444332 3356889999999999


Q ss_pred             EEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCC----eEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600         92 TFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVD----QYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP  167 (277)
Q Consensus        92 ~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d----~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~  167 (277)
                      ++-+|+ +  +.+.+.+++.  ...+--.+-++.+.++|..    .+.=+-|   +..+..+.+..+             
T Consensus       167 ~~~lEt-s--~~~~~~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgE---t~ed~~~~~~~l-------------  225 (336)
T PRK06256        167 NHNLET-S--RSYFPNVVTT--HTYEDRIDTCEMVKAAGIEPCSGGIIGMGE---SLEDRVEHAFFL-------------  225 (336)
T ss_pred             ecCCcc-C--HHHHhhcCCC--CCHHHHHHHHHHHHHcCCeeccCeEEeCCC---CHHHHHHHHHHH-------------
Confidence            655665 3  5555555321  0111112233334444432    1111233   444333333322             


Q ss_pred             HHhHHHHHhhc--CceEEEEec--CCCCCch----hhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        168 VDVIAEYIESA--DLVLIMTVE--PGFGGQK----FMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       168 ~~~i~~~i~~~--d~vl~mav~--Pgt~gq~----~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                              ...  +.+.+..+.  |||+-+.    -..+++..+...|-.+|+..|.+.||=.
T Consensus       226 --------~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~  280 (336)
T PRK06256        226 --------KELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGRE  280 (336)
T ss_pred             --------HhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchh
Confidence                    111  222222222  5665322    1355666666667778999999998863

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=95.67  E-value=0.24  Score=46.47  Aligned_cols=166  Identities=13%  Similarity=0.152  Sum_probs=99.3

Q ss_pred             HHHHHHHhcC-CCCeeeeeeeccC-------cHHhHHHHHhcC--CCeEEEeccCCC--C---------CHHHHHHHHhh
Q psy11600         53 PVVKCLRNKI-PKAFFETHMMVQN-------PQQWIEPMADAN--VDQYTFHVEPVD--N---------VPQVIRQIKEA  111 (277)
Q Consensus        53 ~~v~~l~~~~-~~~~~d~Hlmv~~-------p~~~i~~l~~ag--~d~i~~H~e~~d--~---------g~~~i~~i~~~  111 (277)
                      .+++.+++.. .+.|+-+.+.-.+       .+++.+.+.+++  +|++.+-+-.-.  +         -.++++++|+.
T Consensus       116 ~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~  195 (327)
T cd04738         116 AVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE  195 (327)
T ss_pred             HHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH
Confidence            4567777643 3688888886655       466766665544  898865442111  1         34778888887


Q ss_pred             CC-----Ccccc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh
Q psy11600        112 GM-----KVGQV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE  176 (277)
Q Consensus       112 ~~-----~~~d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~  176 (277)
                      +.     .|+.+          ....++.+.++|+|.|++|--   .... .          ... ++..          
T Consensus       196 ~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~---~~~~-~----------~~~-~~~~----------  250 (327)
T cd04738         196 RNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT---TISR-P----------GLL-RSPL----------  250 (327)
T ss_pred             HhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECC---cccc-c----------ccc-cccc----------
Confidence            64     55543          234567788899999999853   2110 0          000 0000          


Q ss_pred             hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCC-CcCcHHHHHHccCCC---CCcccc--cCHHHHH
Q psy11600        177 SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM--QDMMPKV  249 (277)
Q Consensus       177 ~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~--~~~~~kI  249 (277)
                             -...-|++|....+..++.+.++++..+ ++.+...||| +.+.+.+++.+|++.   |+..+.  +....+|
T Consensus       251 -------~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i  323 (327)
T cd04738         251 -------ANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRI  323 (327)
T ss_pred             -------cCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHH
Confidence                   0001144554444556777888877654 6889999999 566777788888885   444432  5555555


Q ss_pred             H
Q psy11600        250 K  250 (277)
Q Consensus       250 ~  250 (277)
                      .
T Consensus       324 ~  324 (327)
T cd04738         324 K  324 (327)
T ss_pred             H
Confidence            4

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=95.65  E-value=0.16  Score=46.85  Aligned_cols=135  Identities=12%  Similarity=0.067  Sum_probs=86.1

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH-HhcCCCeEEEe--ccC-C--C----------CCHHHHHHHHhhCC-C
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM-ADANVDQYTFH--VEP-V--D----------NVPQVIRQIKEAGM-K  114 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l-~~ag~d~i~~H--~e~-~--d----------~g~~~i~~i~~~~~-~  114 (277)
                      -.+|+.+|+..|+..+-+--++.--.+.++++ ..+|..+-|--  .|. +  |          +-...++.+|+... .
T Consensus       110 ~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~  189 (277)
T TIGR01334       110 HKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPER  189 (277)
T ss_pred             HHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCC
Confidence            46677888766888888888887777776655 45687877221  222 0  0          13456677776531 2


Q ss_pred             --cccc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCC
Q psy11600        115 --VGQV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFG  191 (277)
Q Consensus       115 --~~d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~  191 (277)
                        .+++ ..+.+.+.+++|+|.|-+|-=   +++++.+.                                         
T Consensus       190 kIeVEv~tleea~ea~~~GaDiI~lDn~---~~e~l~~~-----------------------------------------  225 (277)
T TIGR01334       190 KITVEADTIEQALTVLQASPDILQLDKF---TPQQLHHL-----------------------------------------  225 (277)
T ss_pred             CEEEECCCHHHHHHHHHcCcCEEEECCC---CHHHHHHH-----------------------------------------
Confidence              2333 566666677777777777632   33332222                                         


Q ss_pred             CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC--CCccc
Q psy11600        192 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF--GGQKF  241 (277)
Q Consensus       192 gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~--ggq~F  241 (277)
                                 ++.++...+++.+++.||||++|+.++.+.|+++  -|..+
T Consensus       226 -----------v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~  266 (277)
T TIGR01334       226 -----------HERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPY  266 (277)
T ss_pred             -----------HHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcce
Confidence                       3333334566779999999999999999999997  34444

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=95.64  E-value=0.44  Score=42.20  Aligned_cols=171  Identities=15%  Similarity=0.151  Sum_probs=102.6

Q ss_pred             HHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHH
Q psy11600         77 QQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ  150 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~  150 (277)
                      .++++...+.|++.+  ++-.-+..    -...+.++..+..  .-.+..++++.-.+.|||.|-+-.+   +.. ....
T Consensus        24 ~~~ve~al~~Gv~~v--QlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~---D~~-~~~a   97 (211)
T COG0352          24 LEWVEAALKGGVTAV--QLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQD---DMP-LAEA   97 (211)
T ss_pred             HHHHHHHHhCCCeEE--EEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCc---ccc-hHHH
Confidence            577888889999988  65543332    2333444444432  1222456667777889998665544   322 2222


Q ss_pred             HHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHH
Q psy11600        151 IKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDEC  229 (277)
Q Consensus       151 I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~  229 (277)
                      .+..+-+.-+|+... +++........ +|++.+=.+-|...-+.--+.-++.++++++... +-+...||++.++++.+
T Consensus        98 r~~~~~~~iIG~S~h-~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~-iP~vAIGGi~~~nv~~v  175 (211)
T COG0352          98 RELLGPGLIIGLSTH-DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN-IPVVAIGGINLENVPEV  175 (211)
T ss_pred             HHhcCCCCEEEeecC-CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCC-CCEEEEcCCCHHHHHHH
Confidence            233333344555555 66666666655 8887655555532211123334555666655443 55888999999999999


Q ss_pred             HHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        230 AKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       230 ~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      .++|+++   -+..|. ++.....+++++.
T Consensus       176 ~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~  205 (211)
T COG0352         176 LEAGADGVAVVSAITSAADPAAAAKALRNA  205 (211)
T ss_pred             HHhCCCeEEehhHhhcCCCHHHHHHHHHHH
Confidence            9999996   445664 4666777777654

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=95.60  E-value=0.068  Score=50.74  Aligned_cols=233  Identities=12%  Similarity=0.110  Sum_probs=126.9

Q ss_pred             eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHH--H----HhcCCCCeeeeeee--cc---CcHHh
Q psy11600         11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKC--L----RNKIPKAFFETHMM--VQ---NPQQW   79 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~--l----~~~~~~~~~d~Hlm--v~---~p~~~   79 (277)
                      +++.+|+.+.+|.++.||+. ....  |.--+...+.+.|..-.++.  +    .+.--....+.+|.  +.   ++.+.
T Consensus        86 ~~~~an~~r~qea~rvlee~-~k~~--~~~~~~~~~~~ry~~y~le~~~~~~~~~~~~~~~l~~~~LylIT~~~~~ll~~  162 (347)
T PRK02615         86 QVVSANAARVQEALRVLEEY-GKLY--DPELAAAAKQIRYELYTLESELLNASLGKKRRQRLKDARLYLITSPSENLLEV  162 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HccC--CHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhccCCEEEEECCchhHHHH
Confidence            78899999999999999998 3432  33223344566664433221  1    00001122443333  22   23345


Q ss_pred             HHHHHhcCCCeEEEeccCCCCCH----HHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600         80 IEPMADANVDQYTFHVEPVDNVP----QVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKE  153 (277)
Q Consensus        80 i~~l~~ag~d~i~~H~e~~d~g~----~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~  153 (277)
                      ++...++|+.+|  |+-.-+...    ...+.+++.+..  ...+.-++++.-.+.|+|.|  |+. +.+.  .....++
T Consensus       163 l~~al~~Gv~~V--QLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aDGV--HLg-q~dl--~~~~aR~  235 (347)
T PRK02615        163 VEAALKGGVTLV--QYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDADGV--HLG-QEDL--PLAVARQ  235 (347)
T ss_pred             HHHHHHcCCCEE--EECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEE--EeC-hhhc--CHHHHHH
Confidence            777888999998  665433211    222333333321  11223456777788899865  554 1122  1222333


Q ss_pred             -hCCccceeeCCCCCHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH
Q psy11600        154 -AGMKVGLAIKPKTPVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  231 (277)
Q Consensus       154 -~g~~~g~~i~p~t~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~  231 (277)
                       .|...-+|....+ ++.+.... ..+|++.+=.+-|..+-...-+--++.++++.+.. .+-+...|||+..|+.++.+
T Consensus       236 llg~~~iIG~S~Hs-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~  313 (347)
T PRK02615        236 LLGPEKIIGRSTTN-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQ  313 (347)
T ss_pred             hcCCCCEEEEecCC-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHH
Confidence             4545566777665 55555544 36788653223221110000111244455554433 36678889999999999999


Q ss_pred             ccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        232 CLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       232 ~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      +|+++   ++..+. ++.....+++.+.
T Consensus       314 ~Ga~gVAvisaI~~a~dp~~~~~~l~~~  341 (347)
T PRK02615        314 AGAKRVAVVRAIMGAEDPKQATQELLKQ  341 (347)
T ss_pred             cCCcEEEEeHHHhCCCCHHHHHHHHHHH
Confidence            99886   555554 4667777776653

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=95.57  E-value=0.024  Score=50.27  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCC----HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH--
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFG----HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM--   83 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g----~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l--   83 (277)
                      ++++|..++++.++.+++. .+  ++|+..  ..|.  ..+|    ++.++.+|+.  .+++-++++..|-.++....  
T Consensus         4 ~vALD~~~~~~a~~i~~~~-~~--~v~~iKvG~~l~--~~~G~~~l~~~i~~l~~~--~~~I~~D~K~~Dig~t~~~~~~   76 (226)
T PF00215_consen    4 QVALDPTDLEEALRIADEL-GD--YVDIIKVGTPLF--LAYGLEALPEIIEELKER--GKPIFLDLKLGDIGNTVARYAE   76 (226)
T ss_dssp             EEEE-SSSHHHHHHHHHHH-GG--GSSEEEEEHHHH--HHHCHHHHHHHHHHHHHT--TSEEEEEEEE-SSHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHh-cC--cceEEEEChHHH--hcCChhhHHHHHHHHHHh--cCCEeeeeeecccchHHHHHHH
Confidence            5688999999999998887 34  488888  4555  5689    9999999986  38999999999977764444  


Q ss_pred             -----HhcCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         84 -----ADANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        84 -----~~ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                           .++|+|++|+|.-.   |...|+...+.
T Consensus        77 ~~~~~~~~gaD~vTv~~~~---G~~tl~~~~~~  106 (226)
T PF00215_consen   77 AGFAAFELGADAVTVHPFA---GDDTLEAAVKA  106 (226)
T ss_dssp             SCHHHHTTTESEEEEEGTT---HHHHHHHHHHH
T ss_pred             HhhhhhcCCCcEEEEeccC---CHHHHHHHHHH
Confidence                 47899999999643   45566555443

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.42  E-value=1.7  Score=39.44  Aligned_cols=115  Identities=13%  Similarity=0.141  Sum_probs=74.7

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP   97 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~   97 (277)
                      .+..+..+..++.|++.+=+ .-|..|   +.=+.+.++.+|+. .++|+...=.+.+|. +++...++|||.+++....
T Consensus        70 ~~~~~~A~~~~~~GA~aisv-lte~~~---f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~  143 (260)
T PRK00278         70 FDPVEIAKAYEAGGAACLSV-LTDERF---FQGSLEYLRAARAA-VSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAA  143 (260)
T ss_pred             CCHHHHHHHHHhCCCeEEEE-eccccc---CCCCHHHHHHHHHh-cCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEecc
Confidence            35677777888899999632 122233   12357889999986 799999877787888 7999999999999554443


Q ss_pred             CCC--CHHHHHHHHhhCCC-cccc--hhhhhHHHHhcCCCeEEeecC
Q psy11600         98 VDN--VPQVIRQIKEAGMK-VGQV--LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        98 ~d~--g~~~i~~i~~~~~~-~~d~--p~~~i~~~~~~g~d~it~H~E  139 (277)
                      .+.  -..+++..+..+.. ..++  .++. +...++|+|+|.+|..
T Consensus       144 l~~~~l~~li~~a~~lGl~~lvevh~~~E~-~~A~~~gadiIgin~r  189 (260)
T PRK00278        144 LDDEQLKELLDYAHSLGLDVLVEVHDEEEL-ERALKLGAPLIGINNR  189 (260)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHcCCCEEEECCC
Confidence            221  22334444444433 2233  3322 4466889999999853

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=95.41  E-value=0.33  Score=45.64  Aligned_cols=90  Identities=12%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCC------CCHHHHHHHHhcCCCCeeeeeeec--cCcH
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT------FGHPVVKCLRNKIPKAFFETHMMV--QNPQ   77 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~------~g~~~v~~l~~~~~~~~~d~Hlmv--~~p~   77 (277)
                      .-+..||...+...+.+..+.+++.|+|++++-+-=-+.-+...      .-.+.++++|+. +++|+-+-+--  .+..
T Consensus       102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl~p~~~~~~  180 (334)
T PRK07565        102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKLSPYFSNLA  180 (334)
T ss_pred             CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEeCCCchhHH
Confidence            45778888878888888888999999999888662100001100      013667889875 78888887532  2445


Q ss_pred             HhHHHHHhcCCCeEEEecc
Q psy11600         78 QWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e   96 (277)
                      +..+.+.++|+|.+++|--
T Consensus       181 ~~a~~l~~~G~dgI~~~n~  199 (334)
T PRK07565        181 NMAKRLDAAGADGLVLFNR  199 (334)
T ss_pred             HHHHHHHHcCCCeEEEECC
Confidence            6678889999999999843

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=95.39  E-value=0.36  Score=42.88  Aligned_cols=54  Identities=19%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      +.++++.+. .++-+...|||+.+++.++.++|+++   -+..|. ++..+.++++++.
T Consensus       154 ~~l~~~~~~-~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~  211 (221)
T PRK06512        154 SLAEWWAEM-IEIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANAL  211 (221)
T ss_pred             HHHHHHHHh-CCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHH
Confidence            345455443 35778899999999999999999996   344454 5777777777764

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=95.36  E-value=0.18  Score=46.37  Aligned_cols=83  Identities=14%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcC--CCEEEEeccccccccCC-----------CCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSG--ADYLHLDVMDGTFVPNL-----------TFGHPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~--~~~~h~DimDg~fvp~~-----------~~g~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      -+..||...|...+.+..+.+++.+  +|.  +|+-  --+||.           .+--++++++|+. .++|+.+=+-.
T Consensus        92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~--ielN--~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~vKi~~  166 (300)
T TIGR01037        92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDA--YELN--LSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFAKLSP  166 (300)
T ss_pred             cEEEEeecCCHHHHHHHHHHHHhccCccCE--EEEE--CCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEECCC
Confidence            4788999999999999999988753  666  3332  223332           1224678888875 57777766531


Q ss_pred             --cCcHHhHHHHHhcCCCeEEEe
Q psy11600         74 --QNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        74 --~~p~~~i~~l~~ag~d~i~~H   94 (277)
                        .+..+..+.+.++|+|.+++|
T Consensus       167 ~~~~~~~~a~~l~~~G~d~i~v~  189 (300)
T TIGR01037       167 NVTDITEIAKAAEEAGADGLTLI  189 (300)
T ss_pred             ChhhHHHHHHHHHHcCCCEEEEE
Confidence              133455777889999999987

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional

Probab=95.32  E-value=0.33  Score=45.88  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=17.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEe
Q psy11600         19 NLHSESQNLLDSGADYLHLD   38 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~D   38 (277)
                      -+.+|++.|.++|++++.+|
T Consensus       157 al~~Ei~~L~~aG~~~IQiD  176 (339)
T PRK09121        157 ILNQEAKELEAAGVDIIQFD  176 (339)
T ss_pred             HHHHHHHHHHHCCCCEEEec
Confidence            35688999999999999999

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=95.29  E-value=0.2  Score=42.74  Aligned_cols=32  Identities=38%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             HHHhhCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        205 WLRENYPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       205 ~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      .++...+++.+++.||+|++|+.++.+.|.|+
T Consensus       120 ~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~  151 (169)
T PF01729_consen  120 ELRELNPRVKIEASGGITLENIAEYAKTGVDV  151 (169)
T ss_dssp             HHHHHTTTSEEEEESSSSTTTHHHHHHTT-SE
T ss_pred             HHhhcCCcEEEEEECCCCHHHHHHHHhcCCCE
Confidence            33444566889999999999999999999886

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=95.22  E-value=0.38  Score=42.28  Aligned_cols=100  Identities=13%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      .++++...++|++++|.        |+  +.++.++..+.  .+.++-..  +.+|.+ +....+.|+|++-+ +.....
T Consensus        73 ~~~~~~a~~aGA~fivs--------p~--~~~~v~~~~~~--~~~~~~~G--~~t~~E-~~~A~~~Gad~vk~-Fpa~~~  136 (206)
T PRK09140         73 PEQVDRLADAGGRLIVT--------PN--TDPEVIRRAVA--LGMVVMPG--VATPTE-AFAALRAGAQALKL-FPASQL  136 (206)
T ss_pred             HHHHHHHHHcCCCEEEC--------CC--CCHHHHHHHHH--CCCcEEcc--cCCHHH-HHHHHHcCCCEEEE-CCCCCC
Confidence            35777888899999776        55  56677777664  35555555  667755 56667889999976 333445


Q ss_pred             CHHHHHHHHhhCC--Ccccc----hhhhhHHHHhcCCCeEEe
Q psy11600        101 VPQVIRQIKEAGM--KVGQV----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       101 g~~~i~~i~~~~~--~~~d~----p~~~i~~~~~~g~d~it~  136 (277)
                      |+..+++++....  .|+-.    ..+-++++.++|++.+.+
T Consensus       137 G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav  178 (206)
T PRK09140        137 GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGL  178 (206)
T ss_pred             CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEE
Confidence            8999999988763  44432    567888999999999884

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=95.22  E-value=2.5  Score=38.87  Aligned_cols=211  Identities=14%  Similarity=0.150  Sum_probs=112.6

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEE-----ecccc-----------ccccCCCC---CH-HHHHHHHhcC--C
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHL-----DVMDG-----------TFVPNLTF---GH-PVVKCLRNKI--P   63 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~-----DimDg-----------~fvp~~~~---g~-~~v~~l~~~~--~   63 (277)
                      +.++|+.+    ..-.+.++.+.+.|+..+=+     +--.|           .++..+++   |. .+++.+++..  -
T Consensus        14 i~~aag~~----~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~   89 (300)
T TIGR01037        14 LILASGIM----GSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF   89 (300)
T ss_pred             CEeCCcCC----CCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence            34455454    22344566666778877444     11112           23333333   33 3455554321  1


Q ss_pred             CCeeeeeeeccCcHHh---HHHHHhc--CCCeEEEeccCC--CC-----------CHHHHHHHHhhCCCcccc-------
Q psy11600         64 KAFFETHMMVQNPQQW---IEPMADA--NVDQYTFHVEPV--DN-----------VPQVIRQIKEAGMKVGQV-------  118 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~~---i~~l~~a--g~d~i~~H~e~~--d~-----------g~~~i~~i~~~~~~~~d~-------  118 (277)
                      +.|+-+.++-.+++++   ++.+.++  ++|.+-+-+-.-  .+           --++++++|+....|+.+       
T Consensus        90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~  169 (300)
T TIGR01037        90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT  169 (300)
T ss_pred             CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh
Confidence            3588999999998887   4445554  388885543321  11           356788888876555543       


Q ss_pred             -hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE-ecCCCCCchhh
Q psy11600        119 -LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT-VEPGFGGQKFM  196 (277)
Q Consensus       119 -p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~  196 (277)
                       ...+++.+.++|+|.+++|--    +...           ...+..+.+.               +. ..-|.+|....
T Consensus       170 ~~~~~a~~l~~~G~d~i~v~nt----~~~~-----------~~~~~~~~~~---------------~~~~~gg~sg~~~~  219 (300)
T TIGR01037       170 DITEIAKAAEEAGADGLTLINT----LRGM-----------KIDIKTGKPI---------------LANKTGGLSGPAIK  219 (300)
T ss_pred             hHHHHHHHHHHcCCCEEEEEcc----CCcc-----------ccccccCcee---------------eCCCCccccchhhh
Confidence             244667788999999999842    1100           0000111110               00 00122232222


Q ss_pred             hhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-ccCHHHHHHH
Q psy11600        197 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-MQDMMPKVKW  251 (277)
Q Consensus       197 ~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~~~~~~kI~~  251 (277)
                      +-.++.+.++++.. ++.+...||| +.+.+.+++.+|++.   |...+ .+....++++
T Consensus       220 ~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~  278 (300)
T TIGR01037       220 PIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIE  278 (300)
T ss_pred             HHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHH
Confidence            22344556665543 4778889999 567788888889885   44433 3566666553

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=95.14  E-value=2.1  Score=38.98  Aligned_cols=69  Identities=16%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             HHHHHHHHHcCCCEEEEe-ccccccccCCCCCHHHHH-------HHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         21 HSESQNLLDSGADYLHLD-VMDGTFVPNLTFGHPVVK-------CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~D-imDg~fvp~~~~g~~~v~-------~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      -++.+.|++.|+|.+=+- -.|.+|.+.  .+|+++.       ++|+. .++|+=+.++-.++..-+.....+|+|++-
T Consensus        32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~-~~~p~GVnvL~nd~~aalaiA~A~ga~FIR  108 (254)
T PF03437_consen   32 VREAEALEEGGVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRRE-VSVPVGVNVLRNDPKAALAIAAATGADFIR  108 (254)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHh-CCCCEEeeeecCCCHHHHHHHHHhCCCEEE
Confidence            367788999999997664 356888765  6777776       45665 488999999999999888888888999984

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=95.09  E-value=0.35  Score=44.57  Aligned_cols=128  Identities=9%  Similarity=0.061  Sum_probs=93.0

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeee---eeee------------cc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFE---THMM------------VQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d---~Hlm------------v~   74 (277)
                      |=.+..|-..-.+.+++..+.|.+++.+|--+-+|-.|+...-++++..++.  +++++   .|+-            ..
T Consensus        76 pv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~--gv~veaE~ghlG~~d~~~~~~g~s~t  153 (281)
T PRK06806         76 PVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY--GATVEAEIGRVGGSEDGSEDIEMLLT  153 (281)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeECCccCCcccccceeC
Confidence            4456677776667888888899999999988888877877777766666553  55555   4553            34


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--------CCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--------DNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--------d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++-.+...+.|+|++.+=+-..        .-+.+.++++++....|+-+      |.+-+..+.++|++.|.+-.+
T Consensus       154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~  232 (281)
T PRK06806        154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATA  232 (281)
T ss_pred             CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHH
Confidence            666655544567999998822211        12889999999988766533      788899999999999998654

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=95.08  E-value=0.39  Score=41.72  Aligned_cols=150  Identities=20%  Similarity=0.278  Sum_probs=86.7

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCCC-cc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGMK-VG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~~-~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      +.+..+.++|+|++-|-+....   -.+...+.+.+.... .+    +. +++.++.+.+++.|++=+|-.   ......
T Consensus        10 ~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~---e~~e~~   86 (197)
T PF00697_consen   10 EDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGD---ESPEYI   86 (197)
T ss_dssp             HHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SG---G-HHHH
T ss_pred             HHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCC---CCHHHH
Confidence            4577888999999988876532   166667777655442 11    11 667778888899999999976   445555


Q ss_pred             HHHHHhCCccceeeCCCCCHHhHHHH--HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcH
Q psy11600        149 RQIKEAGMKVGLAIKPKTPVDVIAEY--IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI  226 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~~~~i~~~--i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv  226 (277)
                      +.++ .+.+.-.++.+..........  -...|.+++= -..|..|+.|.-+.+.++....   ....+.+.||++.+++
T Consensus        87 ~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~---~~~p~iLAGGl~p~NV  161 (197)
T PF00697_consen   87 KLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLD-SGSGGTGKTFDWSLLKKIVESY---SPKPVILAGGLNPENV  161 (197)
T ss_dssp             HHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEE-SSSTSSSS---GGGGCCCHHT----GTSTEEEESS--TTTH
T ss_pred             HHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEc-cCCCcCCcccCHHHhhhhhhhc---ccCcEEEEcCCChHHH
Confidence            6565 234444444444433222221  2223666644 3455567888888887776532   2567899999999999


Q ss_pred             HHHHH-ccCC
Q psy11600        227 DECAK-CLTG  235 (277)
Q Consensus       227 ~~~~~-~gpg  235 (277)
                      .++.+ .+|.
T Consensus       162 ~~ai~~~~p~  171 (197)
T PF00697_consen  162 REAIRQVRPY  171 (197)
T ss_dssp             HHHHHHC--S
T ss_pred             HHHHHhcCce
Confidence            98877 5554

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=95.02  E-value=0.66  Score=44.32  Aligned_cols=80  Identities=11%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccc--cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFV--PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv--p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      .+...+.++++.+.+.|+..+|+  .-|.-.  ..+.+=.+.++.+++.+|.+.+  +....+ .+.++.+.++|++.++
T Consensus       104 ls~eEI~~~a~~~~~~Gv~~i~l--vgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i--~~g~lt-~e~l~~Lk~aGv~r~~  178 (371)
T PRK09240        104 LDEEEIEREMAAIKKLGFEHILL--LTGEHEAKVGVDYIRRALPIAREYFSSVSI--EVQPLS-EEEYAELVELGLDGVT  178 (371)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEE--eeCCCCCCCCHHHHHHHHHHHHHhCCCcee--ccCCCC-HHHHHHHHHcCCCEEE
Confidence            35556677778888889999776  324432  2222334667778776665433  333333 3457899999999997


Q ss_pred             EeccCCC
Q psy11600         93 FHVEPVD   99 (277)
Q Consensus        93 ~H~e~~d   99 (277)
                      +-.|+.+
T Consensus       179 i~lET~~  185 (371)
T PRK09240        179 VYQETYN  185 (371)
T ss_pred             EEEecCC
Confidence            7777754

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.96  E-value=0.73  Score=40.77  Aligned_cols=95  Identities=11%  Similarity=0.102  Sum_probs=53.9

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-ccc---c-hhhhhHHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGQ---V-LQDWIEPMA  127 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~d---~-p~~~i~~~~  127 (277)
                      ++++.+.+. +=+++.-+.-..+-.+.++.+.+.|++.+-+=+.. +.+.+.|+.+|+.... .+-   + -..-++...
T Consensus         7 ~~~~~l~~~-~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~-~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~   84 (212)
T PRK05718          7 SIEEILRAG-PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT-PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI   84 (212)
T ss_pred             HHHHHHHHC-CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCC-ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH
Confidence            345556542 33344333333333345777888899988555432 4578888888875432 111   1 335678888


Q ss_pred             hcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600        128 DANVDQYTFHVEPVDNVPQVIRQIKE  153 (277)
Q Consensus       128 ~~g~d~it~H~E~~~~~~~~~~~I~~  153 (277)
                      ++||++++-..=   + +.+++..++
T Consensus        85 ~aGA~FivsP~~---~-~~vi~~a~~  106 (212)
T PRK05718         85 EAGAQFIVSPGL---T-PPLLKAAQE  106 (212)
T ss_pred             HcCCCEEECCCC---C-HHHHHHHHH
Confidence            888888776432   2 255554444

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=94.93  E-value=0.23  Score=46.78  Aligned_cols=126  Identities=14%  Similarity=0.159  Sum_probs=86.9

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccc-------------cCCCCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFV-------------PNLTFGHPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv-------------p~~~~g~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      -+..+|...|...+.+..+.+++.|.|.  +||-=|--.             .+..|-.++++++|+. .++|+++-+-+
T Consensus        66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~--IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-v~~pVsvKiR~  142 (333)
T PRK11815         66 PVALQLGGSDPADLAEAAKLAEDWGYDE--INLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-VSIPVTVKHRI  142 (333)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHhcCCCE--EEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-cCCceEEEEEe
Confidence            4788999999999999999999999888  665433222             2333335788999886 57899986643


Q ss_pred             c--C------cHHhHHHHHhcCCCeEEEeccC--CCC------------CHHHHHHHHhhC-CCcc----cc--hhhhhH
Q psy11600         74 Q--N------PQQWIEPMADANVDQYTFHVEP--VDN------------VPQVIRQIKEAG-MKVG----QV--LQDWIE  124 (277)
Q Consensus        74 ~--~------p~~~i~~l~~ag~d~i~~H~e~--~d~------------g~~~i~~i~~~~-~~~~----d~--p~~~i~  124 (277)
                      .  +      ..+.++.+.++|++.+++|.-.  ..+            ..+.++.+++.. ..|+    ++  |++..+
T Consensus       143 g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~  222 (333)
T PRK11815        143 GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKE  222 (333)
T ss_pred             eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHH
Confidence            2  1      2455788889999999999532  111            256788888764 5544    22  666666


Q ss_pred             HHHhcCCCeEEee
Q psy11600        125 PMADANVDQYTFH  137 (277)
Q Consensus       125 ~~~~~g~d~it~H  137 (277)
                      .+.  |||.|.+=
T Consensus       223 ~l~--~aDgVmIG  233 (333)
T PRK11815        223 HLQ--HVDGVMIG  233 (333)
T ss_pred             HHh--cCCEEEEc
Confidence            554  58877763

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.87  E-value=0.55  Score=41.67  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=70.7

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC--Ceeeeeee-------------ccCcHHhHHHHHhc
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK--AFFETHMM-------------VQNPQQWIEPMADA   86 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~--~~~d~Hlm-------------v~~p~~~i~~l~~a   86 (277)
                      ++++.+.+.|++.+|+.-..   .+    .|+.++++++.++.  +.+.+...             -.++.+.++.+.+.
T Consensus        89 ~~~~~~~~~Ga~~v~iGs~~---~~----~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~  161 (241)
T PRK13585         89 EDAASLLDLGVDRVILGTAA---VE----NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL  161 (241)
T ss_pred             HHHHHHHHcCCCEEEEChHH---hh----ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence            55666777899998884333   11    35678888877643  22333322             12788889999999


Q ss_pred             CCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         87 NVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        87 g~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      |++.+++|--..++     ....++++++....|+-.      +++ +..+.++|++.+.+
T Consensus       162 G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~d-i~~~~~~Ga~gv~v  221 (241)
T PRK13585        162 GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDD-LRALKEAGAAGVVV  221 (241)
T ss_pred             CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCCEEEE
Confidence            99999887422222     457789998887666544      444 44467788887776

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=94.80  E-value=0.36  Score=45.47  Aligned_cols=109  Identities=15%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             HHHHHHHHHcCC--CEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         21 HSESQNLLDSGA--DYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        21 ~~~~~~l~~~~~--~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      .+++..|.++|+  |.+-+|+-+|+--    .-.++++++|+.+|+.++-+- -|.++ +....+.++|+|.+.+++-..
T Consensus        99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~----~~~e~I~~ir~~~p~~~vi~g-~V~t~-e~a~~l~~aGad~i~vg~~~G  172 (326)
T PRK05458         99 YDFVDQLAAEGLTPEYITIDIAHGHSD----SVINMIQHIKKHLPETFVIAG-NVGTP-EAVRELENAGADATKVGIGPG  172 (326)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchH----HHHHHHHHHHhhCCCCeEEEE-ecCCH-HHHHHHHHcCcCEEEECCCCC
Confidence            467777788855  9999999997643    334679999999888776552 12344 456788899999987663211


Q ss_pred             --------C--C----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         99 --------D--N----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        99 --------d--~----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                              .  +    +...++++++....|+-.      |.+..+.++- ||+.+.+
T Consensus       173 ~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~-GA~aV~v  229 (326)
T PRK05458        173 KVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GATMVMI  229 (326)
T ss_pred             cccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh-CCCEEEe
Confidence                    1  1    233477777655444322      6776766655 8887665

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=94.75  E-value=0.82  Score=42.89  Aligned_cols=129  Identities=12%  Similarity=0.099  Sum_probs=81.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC-------HHHHHHHHhcCCCCeeeeeeec--cCc
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG-------HPVVKCLRNKIPKAFFETHMMV--QNP   76 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g-------~~~v~~l~~~~~~~~~d~Hlmv--~~p   76 (277)
                      .-+..||...+...+.+..+.+++.|+|++-+.+-=-+.-|+. +|       .+.++++|+. .++|+-+=|=.  .+.
T Consensus       100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~-~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~p~~~~~  177 (325)
T cd04739         100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDI-SGAEVEQRYLDILRAVKSA-VTIPVAVKLSPFFSAL  177 (325)
T ss_pred             CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc-ccchHHHHHHHHHHHHHhc-cCCCEEEEcCCCccCH
Confidence            4577899888888888999999999999865544210011222 22       3678899875 67888776542  245


Q ss_pred             HHhHHHHHhcCCCeEEEeccC----CC---------C----------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600         77 QQWIEPMADANVDQYTFHVEP----VD---------N----------VPQVIRQIKEAGMKVGQV------LQDWIEPMA  127 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~----~d---------~----------g~~~i~~i~~~~~~~~d~------p~~~i~~~~  127 (277)
                      .+.++.+.++|+|.+++|--.    .|         +          ..++++++++..+.|+-.      +++.++.+.
T Consensus       178 ~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~  257 (325)
T cd04739         178 AHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLL  257 (325)
T ss_pred             HHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHH
Confidence            567888899999999988432    11         0          123455555544444321      566666554


Q ss_pred             hcCCCeEEee
Q psy11600        128 DANVDQYTFH  137 (277)
Q Consensus       128 ~~g~d~it~H  137 (277)
                       +||+.|-+=
T Consensus       258 -aGA~~Vqv~  266 (325)
T cd04739         258 -AGADVVMTT  266 (325)
T ss_pred             -cCCCeeEEe
Confidence             777776663

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.70  E-value=0.18  Score=46.71  Aligned_cols=28  Identities=25%  Similarity=0.376  Sum_probs=24.8

Q ss_pred             hCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        209 NYPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      ..+++.+++-||||++|+.++.+.|.|+
T Consensus       243 ~~~~v~ieaSGGI~~~ni~~yA~tGvD~  270 (289)
T PRK07896        243 RAPTVLLESSGGLTLDTAAAYAETGVDY  270 (289)
T ss_pred             cCCCEEEEEECCCCHHHHHHHHhcCCCE
Confidence            3456779999999999999999999997

>PRK08508 biotin synthase; Provisional

Probab=94.62  E-value=2.9  Score=38.28  Aligned_cols=79  Identities=15%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeeccC-cHHhHHHHHhcCCCeEE
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQN-PQQWIEPMADANVDQYT   92 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~-p~~~i~~l~~ag~d~i~   92 (277)
                      +...+-++++...+.|+..+|+ +-.|...+.-.+  =.++++.+|+.+|++.+  |.-... -.+.++.|.++|+|.++
T Consensus        41 s~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i--~~s~G~~~~e~l~~Lk~aGld~~~  117 (279)
T PRK08508         41 DIEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEVPGLHL--IACNGTASVEQLKELKKAGIFSYN  117 (279)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHhhCCCcEE--EecCCCCCHHHHHHHHHcCCCEEc
Confidence            4455556666666789999887 444443333212  23666778776555433  222222 35578999999999995


Q ss_pred             EeccC
Q psy11600         93 FHVEP   97 (277)
Q Consensus        93 ~H~e~   97 (277)
                      .-.|+
T Consensus       118 ~~lEt  122 (279)
T PRK08508        118 HNLET  122 (279)
T ss_pred             ccccc
Confidence            43443

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=94.59  E-value=1.1  Score=42.46  Aligned_cols=73  Identities=18%  Similarity=0.394  Sum_probs=49.2

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeec------------cCcHHhH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMV------------QNPQQWI   80 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv------------~~p~~~i   80 (277)
                      .+...+.++++...+.|+..+++  ..|.. |+..+  =-++++.+|+.+|++.  +|-++            ....+.+
T Consensus        79 l~~eeI~~~a~~~~~~G~~~v~l--~~G~~-p~~~~~~~~e~i~~Ik~~~p~i~--i~~~~~~ei~~~~~~~g~~~~e~l  153 (351)
T TIGR03700        79 MSLEEIVARVKEAYAPGATEVHI--VGGLH-PNLPFEWYLDMIRTLKEAYPDLH--VKAFTAVEIHHFSKISGLPTEEVL  153 (351)
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEE--ecCCC-CCCCHHHHHHHHHHHHHHCCCce--EEeCCHHHHHHHHHHcCCCHHHHH
Confidence            46667777888888889998554  56644 44332  2468888888766644  44332            1245569


Q ss_pred             HHHHhcCCCeEE
Q psy11600         81 EPMADANVDQYT   92 (277)
Q Consensus        81 ~~l~~ag~d~i~   92 (277)
                      ++|.++|++.++
T Consensus       154 ~~LkeAGld~~~  165 (351)
T TIGR03700       154 DELKEAGLDSMP  165 (351)
T ss_pred             HHHHHcCCCcCC
Confidence            999999999883

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=94.58  E-value=0.65  Score=41.05  Aligned_cols=181  Identities=13%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc-c---cc-hhhhhHHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-G---QV-LQDWIEPMA  127 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~-~---d~-p~~~i~~~~  127 (277)
                      .+...+++ .+=+++..+.-+++-....+.+.+.|.+.+-+-+.. +...+.|+.+++.-... +   .+ -.+.+++.+
T Consensus         5 ~~~~~l~~-~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s-p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~   82 (211)
T COG0800           5 KILSKLKA-QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRT-PAALEAIRALAKEFPEALIGAGTVLNPEQARQAI   82 (211)
T ss_pred             HHHHHHHH-CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCC-CCHHHHHHHHHHhCcccEEccccccCHHHHHHHH
Confidence            34555665 466677666666666667899999999988555543 33556677776654421 1   11 456788999


Q ss_pred             hcCCCeE-EeecCCCCChHHHHHHHHHhCCccceeeCCCC-CHHhHHHHHhhcCceEEEEecCC--CCCchhhhhhhhhH
Q psy11600        128 DANVDQY-TFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT-PVDVIAEYIESADLVLIMTVEPG--FGGQKFMQDMMPKV  203 (277)
Q Consensus       128 ~~g~d~i-t~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i~~~d~vl~mav~Pg--t~gq~~~~~~l~kI  203 (277)
                      ++|++++ |-+.+     .++++..+.    .++-+.||. +..++...++. +.-. +=+-|+  ++|.       .-+
T Consensus        83 ~aGa~fiVsP~~~-----~ev~~~a~~----~~ip~~PG~~TptEi~~Ale~-G~~~-lK~FPa~~~Gg~-------~~~  144 (211)
T COG0800          83 AAGAQFIVSPGLN-----PEVAKAANR----YGIPYIPGVATPTEIMAALEL-GASA-LKFFPAEVVGGP-------AML  144 (211)
T ss_pred             HcCCCEEECCCCC-----HHHHHHHHh----CCCcccCCCCCHHHHHHHHHc-Chhh-eeecCccccCcH-------HHH
Confidence            9999965 44432     456666655    467788883 22333333221 1110 112232  1121       112


Q ss_pred             HHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccccc-----CHHHHHHHHH
Q psy11600        204 KWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFMQ-----DMMPKVKWLR  253 (277)
Q Consensus       204 ~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~~-----~~~~kI~~l~  253 (277)
                      +.+..-++++.+.--|||+..|+....++|...   ||+.+-+     +..++|.++.
T Consensus       145 ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a  202 (211)
T COG0800         145 KALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELA  202 (211)
T ss_pred             HHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHH
Confidence            333334678999999999999999999988663   4555433     4555555543

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=94.57  E-value=0.61  Score=40.85  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             CCCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCC------C-----------CCHHHHHHHHhhCCCcccc----
Q psy11600         63 PKAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPV------D-----------NVPQVIRQIKEAGMKVGQV----  118 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~------d-----------~g~~~i~~i~~~~~~~~d~----  118 (277)
                      .+.|+-+-+...+|+++   .+.+.++|+|.+-+|.-..      +           ..-++++++|+....++.+    
T Consensus        53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~  132 (231)
T cd02801          53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL  132 (231)
T ss_pred             cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence            46889999998888876   5555677999998886431      1           1346677777765443332    


Q ss_pred             -------hhhhhHHHHhcCCCeEEeecC
Q psy11600        119 -------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus       119 -------p~~~i~~~~~~g~d~it~H~E  139 (277)
                             ..++++.+.++|+|++++|.-
T Consensus       133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~~  160 (231)
T cd02801         133 GWDDEEETLELAKALEDAGASALTVHGR  160 (231)
T ss_pred             ccCCchHHHHHHHHHHHhCCCEEEECCC
Confidence                   234567777788888888753

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=94.57  E-value=0.19  Score=49.29  Aligned_cols=109  Identities=10%  Similarity=0.131  Sum_probs=63.7

Q ss_pred             CcccHHHHHHHHHHc--CCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         16 DLSNLHSESQNLLDS--GADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        16 d~~~l~~~~~~l~~~--~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      ...++-+|++.+.+.  |++.+.+  .|..|..+-..-.++.+.+++.  ++.+.+..-..--.+.++.+.++|+..+++
T Consensus       228 s~e~V~~Ei~~~~~~~~~~~~i~f--~Dd~f~~~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i  303 (472)
T TIGR03471       228 SAESVIEEVKYALENFPEVREFFF--DDDTFTDDKPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLV  303 (472)
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEE--eCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence            445677888887764  6777554  6877764432223445555542  444444332211345689999999999854


Q ss_pred             eccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCC
Q psy11600         94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVD  132 (277)
Q Consensus        94 H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d  132 (277)
                      =+|  .+.+++++.+++...  .+...+.++.+.++|..
T Consensus       304 GiE--S~s~~~L~~~~K~~~--~~~~~~~i~~~~~~Gi~  338 (472)
T TIGR03471       304 GYE--SGDQQILKNIKKGLT--VEIARRFTRDCHKLGIK  338 (472)
T ss_pred             cCC--CCCHHHHHHhcCCCC--HHHHHHHHHHHHHCCCe
Confidence            444  555778877765322  12234555666666654

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=94.51  E-value=0.49  Score=43.61  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee---------------eeecc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET---------------HMMVQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~---------------Hlmv~   74 (277)
                      |=.+..|-...-+.+++..+.|.+++++|--+-+|-.|+...-++++..++.  ++.+..               .....
T Consensus        76 pv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~--gv~Ve~ElG~~gg~ed~~~g~~~~~t  153 (282)
T TIGR01859        76 PVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAK--GVSVEAELGTLGGIEDGVDEKEAELA  153 (282)
T ss_pred             eEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEeeCCCcCccccccccccccC
Confidence            5566677665566777778889999999987766665665555555444432  333221               03345


Q ss_pred             CcHHhHHHHHhcCCCeEEE-----eccC---CCCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTF-----HVEP---VDNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~-----H~e~---~d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++..+...+.|+|++.+     |.--   ...+.+.++.+++....|+-.      |.+-+..+.++|++-|.+..|
T Consensus       154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~  232 (282)
T TIGR01859       154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTD  232 (282)
T ss_pred             CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcH
Confidence            7777665555589999985     5211   112789999999988766533      888899999999999999876

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=94.46  E-value=0.94  Score=43.67  Aligned_cols=84  Identities=13%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             HHHHHHhcCCCCeeeeeeec-cCcHHh---HHHHHhcCCCeEEEeccCC------CC------CHHHH----HHHHhhCC
Q psy11600         54 VVKCLRNKIPKAFFETHMMV-QNPQQW---IEPMADANVDQYTFHVEPV------DN------VPQVI----RQIKEAGM  113 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv-~~p~~~---i~~l~~ag~d~i~~H~e~~------d~------g~~~i----~~i~~~~~  113 (277)
                      .++.+++.+++.|+-+.+|. .++++|   ++.+.++|+|.+.+-+-.-      ++      -++.+    +++|+.+.
T Consensus       103 ~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~  182 (385)
T PLN02495        103 EFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT  182 (385)
T ss_pred             HHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc
Confidence            45566666788999999998 577776   5667788999998754221      11      23444    66677777


Q ss_pred             Ccccc--------hhhhhHHHHhcCCCeEEee
Q psy11600        114 KVGQV--------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       114 ~~~d~--------p~~~i~~~~~~g~d~it~H  137 (277)
                      .|+-+        +...++.+.++|||-|+.-
T Consensus       183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~li  214 (385)
T PLN02495        183 VPVWAKMTPNITDITQPARVALKSGCEGVAAI  214 (385)
T ss_pred             CceEEEeCCChhhHHHHHHHHHHhCCCEEEEe
Confidence            77654        3445666777899988874

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=94.44  E-value=1  Score=39.67  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=91.0

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQV  147 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~  147 (277)
                      .+..+.++.+.++|+.++  |+---+..    ....+++++.+..  .-.+.-+.++.-.+.|+|.  +|+.   ...-.
T Consensus        19 ~~~~~~l~~~l~~G~~~v--qLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~adG--VHlg---~~d~~   91 (211)
T PRK03512         19 VDSVQWIERLLDAGVRTL--QLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAYG--VHLG---QEDLE   91 (211)
T ss_pred             ECCHHHHHHHHhCCCCEE--EEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCCE--EEcC---hHhCC
Confidence            344567999999999999  65433322    1222333322211  1111334566667788885  4664   21111


Q ss_pred             HHHHHH-hCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCchhhh-hhhhhHHHHHhhCCCccEEEeCCCCcC
Q psy11600        148 IRQIKE-AGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQ-DMMPKVKWLRENYPTLNIEVDGGVGPN  224 (277)
Q Consensus       148 ~~~I~~-~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~-~~l~kI~~l~~~~~~~~i~vdGgV~~~  224 (277)
                      ....++ .|...-+|....+ ++.+....+ .+|++.+=.+-|..+=+...+ --++.+.++.+...++-+...|||+..
T Consensus        92 ~~~~r~~~~~~~~iG~S~H~-~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~  170 (211)
T PRK03512         92 TADLNAIRAAGLRLGVSTHD-DMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLE  170 (211)
T ss_pred             HHHHHHhcCCCCEEEEeCCC-HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHH
Confidence            122333 2333345555553 333433332 568865444433211000001 112234444333345778899999999


Q ss_pred             cHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        225 TIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       225 tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      ++.++.+.|+++   -|..+. ++..+..++++.
T Consensus       171 ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~  204 (211)
T PRK03512        171 RAPAVLATGVGSIAVVSAITQAADWRAATAQLLE  204 (211)
T ss_pred             HHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence            999999998885   445555 467777777665

>PRK06801 hypothetical protein; Provisional

Probab=94.40  E-value=0.44  Score=44.11  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=95.7

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCee--eeee----------------
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF--ETHM----------------   71 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~--d~Hl----------------   71 (277)
                      |=.+..|-...-+.+++..+.|.+++.+|--.-+|-.|+...-++++..++.  ++.+  .++-                
T Consensus        76 pV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~--gv~VE~ElG~vgg~e~~v~~~~~~~~  153 (286)
T PRK06801         76 PVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAV--GVSVEAELGAVGGDEGGALYGEADSA  153 (286)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHc--CCeEEeecCcccCCCCCcccCCcccc
Confidence            5556778887778888888999999999876666666877766666666553  3322  1111                


Q ss_pred             eccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEee
Q psy11600         72 MVQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        72 mv~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      ...+|++..+...+.|+|++.+.+-...|        +++.++.+++....|+-+      |++-+..++++|++.|-+.
T Consensus       154 ~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~  233 (286)
T PRK06801        154 KFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFY  233 (286)
T ss_pred             cCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence            12255555555558899999885544322        788999999887666532      8888999999999999998


Q ss_pred             cCCCCChHHHHHHHHH
Q psy11600        138 VEPVDNVPQVIRQIKE  153 (277)
Q Consensus       138 ~E~~~~~~~~~~~I~~  153 (277)
                      .+   -.....+.+++
T Consensus       234 T~---~~~a~~~~~~~  246 (286)
T PRK06801        234 TG---MSQAALAAVEQ  246 (286)
T ss_pred             hH---HHHHHHHHHHH
Confidence            76   33334444443

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=94.40  E-value=0.65  Score=39.95  Aligned_cols=102  Identities=15%  Similarity=0.074  Sum_probs=69.8

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      .+.++.+.+.|++.+|.        |+  ..++.++..++.  +.++-+..+  ++++ +....++|+|++-+.. ....
T Consensus        66 ~~~~~~a~~~Ga~~i~~--------p~--~~~~~~~~~~~~--~~~~i~gv~--t~~e-~~~A~~~Gad~i~~~p-~~~~  129 (190)
T cd00452          66 PEQADAAIAAGAQFIVS--------PG--LDPEVVKAANRA--GIPLLPGVA--TPTE-IMQALELGADIVKLFP-AEAV  129 (190)
T ss_pred             HHHHHHHHHcCCCEEEc--------CC--CCHHHHHHHHHc--CCcEECCcC--CHHH-HHHHHHCCCCEEEEcC-Cccc
Confidence            56778888899999984        33  235666666653  444444433  7765 4556789999997632 2224


Q ss_pred             CHHHHHHHHhhCC-Ccccc----hhhhhHHHHhcCCCeEEeec
Q psy11600        101 VPQVIRQIKEAGM-KVGQV----LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus       101 g~~~i~~i~~~~~-~~~d~----p~~~i~~~~~~g~d~it~H~  138 (277)
                      |+..+++++.... .++-.    ..+-+..+.++|++.+.+..
T Consensus       130 g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s  172 (190)
T cd00452         130 GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGS  172 (190)
T ss_pred             CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEch
Confidence            8999999987653 44433    66788889999999988864

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=94.34  E-value=0.078  Score=48.54  Aligned_cols=84  Identities=17%  Similarity=0.337  Sum_probs=55.4

Q ss_pred             ChHHHHHHHHHhC-CccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhh-HHHHHhhCCCccEEEeCC
Q psy11600        143 NVPQVIRQIKEAG-MKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPK-VKWLRENYPTLNIEVDGG  220 (277)
Q Consensus       143 ~~~~~~~~I~~~g-~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~k-I~~l~~~~~~~~i~vdGg  220 (277)
                      +....++.+|+.. ....+++.+.+.-+..+.+...+|++.+..+.|+         -+.+ ++.++.. +++.+++.||
T Consensus       166 ~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~e---------~l~~~v~~i~~~-~~i~i~asGG  235 (269)
T cd01568         166 GITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSPE---------ELKEAVKLLKGL-PRVLLEASGG  235 (269)
T ss_pred             CHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHH---------HHHHHHHHhccC-CCeEEEEECC
Confidence            3445556666643 2456888888765544444456898876554441         1222 2223322 5788999999


Q ss_pred             CCcCcHHHHHHccCCC
Q psy11600        221 VGPNTIDECAKCLTGF  236 (277)
Q Consensus       221 V~~~tv~~~~~~gpg~  236 (277)
                      ||.+|+.++.++|+++
T Consensus       236 It~~ni~~~a~~Gad~  251 (269)
T cd01568         236 ITLENIRAYAETGVDV  251 (269)
T ss_pred             CCHHHHHHHHHcCCCE
Confidence            9999999999999996

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=94.32  E-value=1  Score=41.48  Aligned_cols=205  Identities=15%  Similarity=0.063  Sum_probs=105.0

Q ss_pred             CcccHHHHHHHHHHcCCCEEEE------eccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600         16 DLSNLHSESQNLLDSGADYLHL------DVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANV   88 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~------DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~   88 (277)
                      |..+. ++-+..+++|+=.+-+      |+-- |...  =.=+++.|+++|+. .++|+-.=....+ ..+++.+.++|+
T Consensus        14 ~v~~~-~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~--R~~~~~~I~~Ik~~-V~iPVIGi~K~~~-~~Ea~~L~eaGv   88 (283)
T cd04727          14 DVTNA-EQARIAEEAGAVAVMALERVPADIRAAGGVA--RMADPKMIKEIMDA-VSIPVMAKVRIGH-FVEAQILEALGV   88 (283)
T ss_pred             EeCCH-HHHHHHHHcCceEEeeeccCchhhhhcCCee--ecCCHHHHHHHHHh-CCCCeEEeeehhH-HHHHHHHHHcCC
Confidence            33443 4556677777655222      3322 2222  22389999999986 7999887666655 778999999999


Q ss_pred             CeEEEeccCCCC---CHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCC
Q psy11600         89 DQYTFHVEPVDN---VPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKP  164 (277)
Q Consensus        89 d~i~~H~e~~d~---g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p  164 (277)
                      |+|    |..+-   -..+++.+|.....++-         +++.            ++.+.++.++. |.. .+--+..
T Consensus        89 DiI----DaT~r~rP~~~~~~~iK~~~~~l~M---------AD~s------------tleEal~a~~~-Gad~I~TTl~g  142 (283)
T cd04727          89 DMI----DESEVLTPADEEHHIDKHKFKVPFV---------CGAR------------NLGEALRRISE-GAAMIRTKGEA  142 (283)
T ss_pred             CEE----eccCCCCcHHHHHHHHHHHcCCcEE---------ccCC------------CHHHHHHHHHC-CCCEEEecCCC
Confidence            999    33321   23455555543222211         1100            34444444432 211 1223333


Q ss_pred             CCCH--H---hHHHHHhhcCceEEEEecCCCC-C-chhhhhhhhhHHHHHhhCCCccEE--EeCCC-CcCcHHHHHHccC
Q psy11600        165 KTPV--D---VIAEYIESADLVLIMTVEPGFG-G-QKFMQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKCLT  234 (277)
Q Consensus       165 ~t~~--~---~i~~~i~~~d~vl~mav~Pgt~-g-q~~~~~~l~kI~~l~~~~~~~~i~--vdGgV-~~~tv~~~~~~gp  234 (277)
                      +|+-  +   -+...-..+-.+.++  ++.+. + .+-...=++.++++.+.. .+-+.  ..||| +.+++..+++.|+
T Consensus       143 yT~~~~~~~~~~~~i~~~i~~~~gy--t~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GA  219 (283)
T cd04727         143 GTGNVVEAVRHMRAVNGEIRKLQSM--SEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGA  219 (283)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCC--CHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCC
Confidence            3331  0   000000000000001  01000 0 000011123455555433 24454  78999 9999999999999


Q ss_pred             CC---CCcccc-cCHHHHHHHHHh
Q psy11600        235 GF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       235 g~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      +.   |+..|. ++.....+++++
T Consensus       220 dgVaVGSAI~~a~dP~~~tk~f~~  243 (283)
T cd04727         220 DGVFVGSGIFKSENPEKRARAIVE  243 (283)
T ss_pred             CEEEEcHHhhcCCCHHHHHHHHHH
Confidence            85   777776 466777777765

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=94.30  E-value=0.2  Score=49.72  Aligned_cols=111  Identities=10%  Similarity=0.105  Sum_probs=64.6

Q ss_pred             cCcccHHHHHHHHH-HcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccC---cHHhHHHHHhcCCC
Q psy11600         15 SDLSNLHSESQNLL-DSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQN---PQQWIEPMADANVD   89 (277)
Q Consensus        15 ~d~~~l~~~~~~l~-~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~---p~~~i~~l~~ag~d   89 (277)
                      -+..+.-+|++.+. +.|+..  +-+.|.+|..|-..-.++++.|.+.- .++.+.+..-+.+   -.+.++.+.++|+.
T Consensus       222 rs~e~Vv~Ei~~l~~~~gv~~--~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~  299 (497)
T TIGR02026       222 RDPKKFVDEIEWLVRTHGVGF--FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV  299 (497)
T ss_pred             CCHHHHHHHHHHHHHHcCCCE--EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence            34556778888875 468887  55688777644333345666666542 1333333333322   24578999999999


Q ss_pred             eEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCC
Q psy11600         90 QYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANV  131 (277)
Q Consensus        90 ~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~  131 (277)
                      .+.+=+|+  +.++.++.+++....  +-..+-++.+.++|.
T Consensus       300 ~v~iGiES--~~~~~L~~~~K~~t~--~~~~~ai~~l~~~Gi  337 (497)
T TIGR02026       300 HISLGTEA--AAQATLDHFRKGTTT--STNKEAIRLLRQHNI  337 (497)
T ss_pred             EEEEcccc--CCHHHHHHhcCCCCH--HHHHHHHHHHHHCCC
Confidence            98555554  446777777654321  112334445555554

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>TIGR00433 bioB biotin synthetase

Probab=94.19  E-value=0.88  Score=41.51  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC--CCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI--PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~--~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e   96 (277)
                      .+-++++.+.+.|+..+|+  .++.+-|.-..-.+.++.+++..  .++.+.++.-.. ..+.++.+.++|++++.+=+|
T Consensus        66 ei~~~~~~~~~~g~~~~~l--~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~-~~e~l~~Lk~aG~~~v~i~~E  142 (296)
T TIGR00433        66 EVLEEARKAKAAGATRFCL--VASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLL-DPEQAKRLKDAGLDYYNHNLD  142 (296)
T ss_pred             HHHHHHHHHHHCCCCEEEE--EEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCCEEEEccc
Confidence            4455666667788888664  33223232221134555555321  345554444322 356789999999999966666


Q ss_pred             CCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeE---Ee-ecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHH
Q psy11600         97 PVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQY---TF-HVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIA  172 (277)
Q Consensus        97 ~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~i---t~-H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~  172 (277)
                         +.+++.+.+++  ..-.+--.+.++.+.++|....   .+ +-|   +..+..+.++.+.   .+            
T Consensus       143 ---~~~~~~~~i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~e---t~~d~~~~~~~l~---~l------------  199 (296)
T TIGR00433       143 ---TSQEFYSNIIS--THTYDDRVDTLENAKKAGLKVCSGGIFGLGE---TVEDRIGLALALA---NL------------  199 (296)
T ss_pred             ---CCHHHHhhccC--CCCHHHHHHHHHHHHHcCCEEEEeEEEeCCC---CHHHHHHHHHHHH---hC------------
Confidence               35666666542  1111112334556666676521   11 234   4444444443321   00            


Q ss_pred             HHHhhcCceE--EEEecCCCCCchh----hhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        173 EYIESADLVL--IMTVEPGFGGQKF----MQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       173 ~~i~~~d~vl--~mav~Pgt~gq~~----~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                          ..+.+.  .+...|||+-..+    ..++++.+...+...|+..+-+.++-
T Consensus       200 ----~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~  250 (296)
T TIGR00433       200 ----PPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGR  250 (296)
T ss_pred             ----CCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCc
Confidence                011111  1233457754332    34666777777778888777665554

Catalyzes the last step of the biotin biosynthesis pathway.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=94.17  E-value=1.7  Score=39.79  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             HHHHHHHHcCCCEEEEeccc-ccc-----ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600         22 SESQNLLDSGADYLHLDVMD-GTF-----VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV   95 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimD-g~f-----vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~   95 (277)
                      +-++.|.+.|++.     ++ |+|     +|.++=-...++.+.+. ++..+-+.  +.+ .+.++...++|++++++=.
T Consensus        24 ~i~~~L~~~Gv~~-----IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~--~~~-~~dv~~A~~~g~~~i~i~~   94 (274)
T cd07938          24 ELIDALSAAGLRR-----IEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSAL--VPN-LRGAERALAAGVDEVAVFV   94 (274)
T ss_pred             HHHHHHHHcCCCE-----EEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEE--CCC-HHHHHHHHHcCcCEEEEEE
Confidence            3445566667665     55 666     44433222444444432 34444433  334 3458999999999985444


Q ss_pred             cCCC
Q psy11600         96 EPVD   99 (277)
Q Consensus        96 e~~d   99 (277)
                      -+.+
T Consensus        95 ~~Sd   98 (274)
T cd07938          95 SASE   98 (274)
T ss_pred             ecCH
Confidence            3333

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=94.14  E-value=0.056  Score=49.56  Aligned_cols=73  Identities=18%  Similarity=0.213  Sum_probs=45.5

Q ss_pred             hHHHHHhhCC---CccEEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600        202 KVKWLRENYP---TLNIEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       202 kI~~l~~~~~---~~~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      -|+++|+..|   +++++|+   +++-+++..++|||. =--.|.++.+++.-+++...+...+|+-||||++|++.+++
T Consensus       177 Av~~aR~~~~~~~kIEVEve---sle~~~eAl~agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~  253 (280)
T COG0157         177 AVRRARAAAPFTKKIEVEVE---SLEEAEEALEAGADIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAE  253 (280)
T ss_pred             HHHHHHHhCCCCceEEEEcC---CHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhh
Confidence            3555555554   4566654   444445557788885 22344454444444444445678899999999999988763

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=94.07  E-value=0.077  Score=45.30  Aligned_cols=74  Identities=26%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             hHHHHHhhCCCcc-EEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        202 KVKWLRENYPTLN-IEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       202 kI~~l~~~~~~~~-i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      -++.+++..|... ++|.-- +.+-+.++.++|++. ==-.|.++.++++. .+++..++..|++-||||++|+.+++
T Consensus        69 av~~~~~~~~~~~~I~VEv~-~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya  145 (169)
T PF01729_consen   69 AVKAARQAAPEKKKIEVEVE-NLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYA  145 (169)
T ss_dssp             HHHHHHHHSTTTSEEEEEES-SHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHH
T ss_pred             HHHHHHHhCCCCceEEEEcC-CHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHH
Confidence            3445555554432 444211 334444556677664 11223333333333 34556778999999999999998875

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=94.00  E-value=2.1  Score=37.59  Aligned_cols=147  Identities=16%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCCC---cc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGMK---VG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~~---~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.++.+.++|+|++-|=+....   -.+...+.|.+.-..   .+    +. |+...+...++|.|++=+|-+   ....
T Consensus        12 eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~---e~~~   88 (207)
T PRK13958         12 KDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT---ESID   88 (207)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC---CCHH
Confidence            3466788999999987654321   156666777664321   11    11 677777778899999999976   4455


Q ss_pred             HHHHHHHh--CCccceeeCCCC-CHHhHHHHHhhcCceEEEEec--CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        147 VIRQIKEA--GMKVGLAIKPKT-PVDVIAEYIESADLVLIMTVE--PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       147 ~~~~I~~~--g~~~g~~i~p~t-~~~~i~~~i~~~d~vl~mav~--Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                      ..+.+++.  +.+.=.++.... .++.+.+|-..+|.+++=+-.  +|..|+.|.-+.+..+       ....+.+.||+
T Consensus        89 ~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~~~~-------~~~p~iLAGGL  161 (207)
T PRK13958         89 FIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILKHI-------KDIPYLIAGGI  161 (207)
T ss_pred             HHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHhhhc-------cCCCEEEECCC
Confidence            55556542  122222233321 122234444456877766622  2344556654444322       12357899999


Q ss_pred             CcCcHHHHHH--ccC
Q psy11600        222 GPNTIDECAK--CLT  234 (277)
Q Consensus       222 ~~~tv~~~~~--~gp  234 (277)
                      +.+|+.++.+  .+|
T Consensus       162 ~peNV~~a~~~~~~p  176 (207)
T PRK13958        162 NSENIQTVEQLKLSH  176 (207)
T ss_pred             CHHHHHHHHhcCCCC
Confidence            9999988763  355

>cd04732 HisA HisA

Probab=93.98  E-value=1.3  Score=38.87  Aligned_cols=115  Identities=12%  Similarity=0.176  Sum_probs=78.0

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+.+++.|+|++|+==.|+.|. +-....+.++++++. .++|+.+-=-+.++++ ++.+.++|+|.+.+=....
T Consensus        30 dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~-~~~~~~~Gad~vvigs~~l  106 (234)
T cd04732          30 DPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKA-VGIPVQVGGGIRSLED-IERLLDLGVSRVIIGTAAV  106 (234)
T ss_pred             CHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHh-cCCCEEEeCCcCCHHH-HHHHHHcCCCEEEECchHH
Confidence            334555566778999988854455543 234567899999986 5677777556666665 5666789999985443333


Q ss_pred             CCCHHHHHHHHhhCCC-----cccc-----------------hhhhhHHHHhcCCCeEEee
Q psy11600         99 DNVPQVIRQIKEAGMK-----VGQV-----------------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        99 d~g~~~i~~i~~~~~~-----~~d~-----------------p~~~i~~~~~~g~d~it~H  137 (277)
                      . .|++++.+.+....     .+|+                 +.++++.+.++|++.+++|
T Consensus       107 ~-dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~  166 (234)
T cd04732         107 K-NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT  166 (234)
T ss_pred             h-ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence            2 57777777666321     2221                 5677888999999999998

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=93.95  E-value=2.8  Score=37.92  Aligned_cols=179  Identities=15%  Similarity=0.189  Sum_probs=102.8

Q ss_pred             EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-cC--C-CC---CHHHHHH
Q psy11600         35 LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-EP--V-DN---VPQVIRQ  107 (277)
Q Consensus        35 ~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~--~-d~---g~~~i~~  107 (277)
                      .-+|+.||..|.-..+        ++        .. +..+|.+.++.+.+.|++++  |+ |.  . .+   ...++++
T Consensus         8 paiD~~~G~~V~~~~~--------~~--------~~-~~~dp~~~a~~~~~~g~~~l--~i~Dl~~~~~~~~~n~~~i~~   68 (258)
T PRK01033          8 PCLLLKDGGLVKTVKF--------KD--------PR-YIGDPINAVRIFNEKEVDEL--IVLDIDASKRGSEPNYELIEN   68 (258)
T ss_pred             EEEEEECCcEEEeecc--------cC--------ce-eCCCHHHHHHHHHHcCCCEE--EEEECCCCcCCCcccHHHHHH
Confidence            3489999987743221        11        11 25699999999999999998  53 32  1 11   4678999


Q ss_pred             HHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-ccceeeCC-----------------
Q psy11600        108 IKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KVGLAIKP-----------------  164 (277)
Q Consensus       108 i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~g~~i~p-----------------  164 (277)
                      +.+.+..|+.+     -.+-++.+..+|++.+.+-.+.-+++.-+.+..++.+- +..+++..                 
T Consensus        69 i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~  148 (258)
T PRK01033         69 LASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK  148 (258)
T ss_pred             HHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence            98887666654     12335556688999998876522234344445554431 11222221                 


Q ss_pred             --CCCHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHH-HccCCC
Q psy11600        165 --KTPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA-KCLTGF  236 (277)
Q Consensus       165 --~t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~-~~gpg~  236 (277)
                        ......+.+.+..  ++.+++..+.-....+.+.   ++.++++++. .++.+..-|||.- +.+..+. +.|++.
T Consensus       149 ~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d---~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~Gvdg  222 (258)
T PRK01033        149 KLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYD---LELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADA  222 (258)
T ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCC---HHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCE
Confidence              2223334444444  5777777666532223333   3334444443 4678889999974 4555555 566553

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=93.94  E-value=4.3  Score=36.07  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=47.2

Q ss_pred             HHHHHHHHHcCCCEEEEeccc-ccccc-----CCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         21 HSESQNLLDSGADYLHLDVMD-GTFVP-----NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimD-g~fvp-----~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      .+-++.|.+.|+++     ++ |.+.+     .+.-..+.++.+++..++.++-+  |+.+-.+.++.+.++|++++++-
T Consensus        22 ~~i~~~L~~~GV~~-----IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~~~~~~~i~~a~~~g~~~i~i~   94 (265)
T cd03174          22 LEIAEALDEAGVDS-----IEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LVRNREKGIERALEAGVDEVRIF   94 (265)
T ss_pred             HHHHHHHHHcCCCE-----EEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--EccCchhhHHHHHhCCcCEEEEE
Confidence            34455666667655     45 33433     33445678999998755555544  45555788999999999999776


Q ss_pred             ccCCC
Q psy11600         95 VEPVD   99 (277)
Q Consensus        95 ~e~~d   99 (277)
                      ....+
T Consensus        95 ~~~s~   99 (265)
T cd03174          95 DSASE   99 (265)
T ss_pred             EecCH
Confidence            65543

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=93.89  E-value=0.63  Score=43.20  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHcCCCEEEEecccccc-----cc---------------CCCCCHHHHHHHHhcC-CCCeeeeeeeccC---
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTF-----VP---------------NLTFGHPVVKCLRNKI-PKAFFETHMMVQN---   75 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~f-----vp---------------~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~---   75 (277)
                      +.+..+++.++|.|.+-+-.--|-+     .|               ...|-.++++++|+.+ +++++-+-+-..+   
T Consensus       143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~  222 (327)
T cd02803         143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP  222 (327)
T ss_pred             HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence            3455667888999996555543321     12               1223368899999875 3666666554321   


Q ss_pred             ----c---HHhHHHHHhcCCCeEEEeccCC--------------CCCHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600         76 ----P---QQWIEPMADANVDQYTFHVEPV--------------DNVPQVIRQIKEAGMKVGQV------LQDWIEPMAD  128 (277)
Q Consensus        76 ----p---~~~i~~l~~ag~d~i~~H~e~~--------------d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~  128 (277)
                          +   .+.++.+.++|+|+++++.-..              ......++++|+..+.|+-.      |++..+.+..
T Consensus       223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~  302 (327)
T cd02803         223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAE  302 (327)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHC
Confidence                2   2347788899999997663211              11346778888877665533      5665555544


Q ss_pred             cCCCeEEe
Q psy11600        129 ANVDQYTF  136 (277)
Q Consensus       129 ~g~d~it~  136 (277)
                      -|+|.|.+
T Consensus       303 g~aD~V~i  310 (327)
T cd02803         303 GKADLVAL  310 (327)
T ss_pred             CCCCeeee
Confidence            47888877

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=93.82  E-value=3.3  Score=40.74  Aligned_cols=115  Identities=16%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             HHHHHHHHHcCCCEEEEeccccc-cccCCCC----CHHHHHHHHhcCCCCeeeeeeeccCc-----------HHhHHHHH
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGT-FVPNLTF----GHPVVKCLRNKIPKAFFETHMMVQNP-----------QQWIEPMA   84 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~-fvp~~~~----g~~~v~~l~~~~~~~~~d~Hlmv~~p-----------~~~i~~l~   84 (277)
                      -+-++.|.+.|++.  +.+.-|. |--+++|    ..+.++.+++..|+.++-.++-..|+           .+.++...
T Consensus        29 l~ia~~Ld~~Gv~~--IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~  106 (448)
T PRK12331         29 LPILEKLDNAGYHS--LEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSV  106 (448)
T ss_pred             HHHHHHHHHcCCCE--EEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHH
Confidence            34455677778888  6664331 2222222    23688999887788888766655543           23467788


Q ss_pred             hcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc------cch-------hhhhHHHHhcCCCeEEee
Q psy11600         85 DANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG------QVL-------QDWIEPMADANVDQYTFH  137 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~------d~p-------~~~i~~~~~~g~d~it~H  137 (277)
                      ++|+|++.+=.-..+.  ....++.+|+.+..+-      +-|       .++++.+.++|||.|++-
T Consensus       107 ~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~  174 (448)
T PRK12331        107 ENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK  174 (448)
T ss_pred             HCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            8999998443222332  4456677777654311      013       456678889999999884

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=93.72  E-value=2.4  Score=38.56  Aligned_cols=63  Identities=16%  Similarity=0.043  Sum_probs=50.6

Q ss_pred             ccCc-HHhHHHHHhcCCCeEEEec-cCCCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeec
Q psy11600         73 VQNP-QQWIEPMADANVDQYTFHV-EPVDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        73 v~~p-~~~i~~l~~ag~d~i~~H~-e~~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..|| .+..+.+.++|++|+  |+ |-.....++|+++.+.+..++.+     . +-++.+.++||+.+.+-.
T Consensus        36 ~~~pp~~~A~~~~~~Ga~~l--HvVDLg~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS  105 (253)
T TIGR02129        36 SDKPSSYYAKLYKDDGVKGC--HVIMLGPNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTS  105 (253)
T ss_pred             cCCCHHHHHHHHHHcCCCEE--EEEECCCCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence            3578 999999999999999  63 33222567888888887777766     5 889999999999999965

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK08445 hypothetical protein; Provisional

Probab=93.67  E-value=1.6  Score=41.32  Aligned_cols=82  Identities=11%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEecccc-ccccCCCCCHHHHHHHHhcCCCCeeee----------eeeccCcHHhHHHHH
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDG-TFVPNLTFGHPVVKCLRNKIPKAFFET----------HMMVQNPQQWIEPMA   84 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~g~~~v~~l~~~~~~~~~d~----------Hlmv~~p~~~i~~l~   84 (277)
                      +...+.+.++++.+.|+..+|+  .+| ++.-.+.+=.++++.+++.+|++.+.+          ++.-....+.+++|.
T Consensus        74 ~~eeI~~~~~~a~~~g~~~i~~--~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~Lk  151 (348)
T PRK08445         74 SFEEIDKKIEELLAIGGTQILF--QGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQ  151 (348)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHH
Confidence            5567778888899999998876  332 332222233578889999877765432          111112367899999


Q ss_pred             hcCCCeEE-EeccCCC
Q psy11600         85 DANVDQYT-FHVEPVD   99 (277)
Q Consensus        85 ~ag~d~i~-~H~e~~d   99 (277)
                      ++|.+.++ .=.|+.+
T Consensus       152 eAGl~~~~g~glE~~~  167 (348)
T PRK08445        152 AKGLSSIPGAGAEILS  167 (348)
T ss_pred             HcCCCCCCCCceeeCC
Confidence            99999883 1245544

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=93.67  E-value=2  Score=39.63  Aligned_cols=82  Identities=7%  Similarity=-0.059  Sum_probs=59.3

Q ss_pred             HHHHHhcCCCCeeeeeeecc-CcHH---hHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCCcccc----hhhh
Q psy11600         55 VKCLRNKIPKAFFETHMMVQ-NPQQ---WIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMKVGQV----LQDW  122 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~-~p~~---~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~~~d~----p~~~  122 (277)
                      .+.+++. ...++-+.|... ++..   .++.+.+.|++.+-+|.++...    ..+.++++++.+..|+-+    ..+.
T Consensus       107 ~~~i~~~-~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~  185 (299)
T cd02809         107 LEEVAAA-APGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPED  185 (299)
T ss_pred             HHHHHHh-cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHH
Confidence            4455554 336788888775 6654   3566677899999999887542    357899999987665543    4556


Q ss_pred             hHHHHhcCCCeEEee
Q psy11600        123 IEPMADANVDQYTFH  137 (277)
Q Consensus       123 i~~~~~~g~d~it~H  137 (277)
                      +..+.++|+|.|++|
T Consensus       186 a~~a~~~G~d~I~v~  200 (299)
T cd02809         186 ALRAVDAGADGIVVS  200 (299)
T ss_pred             HHHHHHCCCCEEEEc
Confidence            788899999999996

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like

Probab=93.66  E-value=1.4  Score=42.09  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCC-----CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLT-----FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-----~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      +.++++.|.+.|++|+++|  |-.++-...     ...+.++.+.+..|+..+.+|....+....++.+.+..+|.+  |
T Consensus       184 y~~el~~L~~aG~~~IQiD--EP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~l--~  259 (360)
T cd03312         184 YKELLKKLAAAGAEWVQID--EPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDGL--H  259 (360)
T ss_pred             HHHHHHHHHHCCCCEEEee--CChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCEE--E
Confidence            4578999999999998888  422221111     112444555444356778888888887777888999999999  6


Q ss_pred             ccCCC
Q psy11600         95 VEPVD   99 (277)
Q Consensus        95 ~e~~d   99 (277)
                      +|..+
T Consensus       260 le~~~  264 (360)
T cd03312         260 LDLVR  264 (360)
T ss_pred             EEecC
Confidence            66544

Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.65  E-value=1.5  Score=38.55  Aligned_cols=139  Identities=10%  Similarity=0.093  Sum_probs=87.7

Q ss_pred             hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600         79 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKE  153 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~  153 (277)
                      .++.+.+.|...+-+=+. ..+..+.|+.+++.... .+   .+ -.+-++..+++|++++-=..    ..+++++..++
T Consensus        21 ia~al~~gGi~~iEit~~-tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----~~~~vi~~a~~   95 (201)
T PRK06015         21 LARALAAGGLPAIEITLR-TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----TTQELLAAAND   95 (201)
T ss_pred             HHHHHHHCCCCEEEEeCC-CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----CCHHHHHHHHH
Confidence            477788889998755444 23466677777665432 11   11 45677999999999765332    22567777776


Q ss_pred             hCCccceeeCCCC-CHHhHHHHHh-hcCceEEEEecCCCC--CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHH
Q psy11600        154 AGMKVGLAIKPKT-PVDVIAEYIE-SADLVLIMTVEPGFG--GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDEC  229 (277)
Q Consensus       154 ~g~~~g~~i~p~t-~~~~i~~~i~-~~d~vl~mav~Pgt~--gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~  229 (277)
                      .    ++-.-||. +.+++....+ -+++   +=+-|...  |.       +-++.++.-+|++.+.--|||+.+|+.+.
T Consensus        96 ~----~i~~iPG~~TptEi~~A~~~Ga~~---vK~FPa~~~GG~-------~yikal~~plp~~~l~ptGGV~~~n~~~~  161 (201)
T PRK06015         96 S----DVPLLPGAATPSEVMALREEGYTV---LKFFPAEQAGGA-------AFLKALSSPLAGTFFCPTGGISLKNARDY  161 (201)
T ss_pred             c----CCCEeCCCCCHHHHHHHHHCCCCE---EEECCchhhCCH-------HHHHHHHhhCCCCcEEecCCCCHHHHHHH
Confidence            4    55566762 3334433332 2333   23456421  21       23566677789999999999999999999


Q ss_pred             HHccCCC
Q psy11600        230 AKCLTGF  236 (277)
Q Consensus       230 ~~~gpg~  236 (277)
                      .++|.-+
T Consensus       162 l~ag~~~  168 (201)
T PRK06015        162 LSLPNVV  168 (201)
T ss_pred             HhCCCeE
Confidence            9986443

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=93.63  E-value=0.54  Score=42.42  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             cHHhHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhhCCC------cccch---hhhhHHHHhcCCCeEEeecC
Q psy11600         76 PQQWIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEAGMK------VGQVL---QDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~~~~------~~d~p---~~~i~~~~~~g~d~it~H~E  139 (277)
                      +.++++.+.+ -++++-++.+. ..+|+.+++.+++....      .+|+|   ..+.+...+.|+|++|+|.-
T Consensus        26 ~~~~~~~~~~-~~~~~Kvg~~l~~~~g~~~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~   98 (240)
T COG0284          26 ALAFVDKLGP-TVDFVKVGKPLVAFFGADILEELKARGKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHAF   98 (240)
T ss_pred             HHHHHHHhhc-cccEEEEchHHHHhccHHHHHHHHHhCCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCc
Confidence            4455666665 57888888886 35699999999999853      33555   67888999999999999985

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=93.63  E-value=0.67  Score=46.13  Aligned_cols=65  Identities=20%  Similarity=0.345  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEE
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTF   93 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~   93 (277)
                      .+.++.|.++|+|.+|+|.-+|+-.    +-.+.++++|+.+|++++    ++.|-.  +..+.+.++|+|.+-+
T Consensus       243 ~~~~~~l~~ag~d~i~id~a~G~s~----~~~~~i~~ik~~~~~~~v----~aG~V~t~~~a~~~~~aGad~I~v  309 (495)
T PTZ00314        243 IERAAALIEAGVDVLVVDSSQGNSI----YQIDMIKKLKSNYPHVDI----IAGNVVTADQAKNLIDAGADGLRI  309 (495)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCch----HHHHHHHHHHhhCCCceE----EECCcCCHHHHHHHHHcCCCEEEE
Confidence            5677778889999999999887553    335789999998776544    444433  4577889999999843

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=93.59  E-value=1.1  Score=42.11  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=88.6

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCC---CC----------HHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---FG----------HPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g----------~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      -+..+|...|...+.+..+.+++.|.|.  +||-=|--+++..   +|          .++|+.+++. .++|+.|=+=+
T Consensus        56 p~~vQl~g~~p~~~~~aA~~~~~~g~d~--IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-~~~PVsvKiR~  132 (318)
T TIGR00742        56 PVALQLGGSDPNDLAKCAKIAEKRGYDE--INLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-VNIPVTVKHRI  132 (318)
T ss_pred             cEEEEEccCCHHHHHHHHHHHHhCCCCE--EEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-hCCCeEEEEec
Confidence            4778999999999999999999988888  7765454333322   22          4677888875 67888887755


Q ss_pred             c--C------cHHhHHHHHhcCCCeEEEeccCC--CC------------CHHHHHHHHhhC-CCcc----cc--hhhhhH
Q psy11600         74 Q--N------PQQWIEPMADANVDQYTFHVEPV--DN------------VPQVIRQIKEAG-MKVG----QV--LQDWIE  124 (277)
Q Consensus        74 ~--~------p~~~i~~l~~ag~d~i~~H~e~~--d~------------g~~~i~~i~~~~-~~~~----d~--p~~~i~  124 (277)
                      .  +      ..++++.+.++|++.+++|.-..  .|            -...|+++++.. ..|+    |+  +++..+
T Consensus       133 g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~  212 (318)
T TIGR00742       133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQ  212 (318)
T ss_pred             CCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHH
Confidence            2  1      23457888899999999997752  11            124577777754 4444    33  777777


Q ss_pred             HHHhcCCCeEEeec
Q psy11600        125 PMADANVDQYTFHV  138 (277)
Q Consensus       125 ~~~~~g~d~it~H~  138 (277)
                      .+.  |||.|-+--
T Consensus       213 ~l~--g~dgVMigR  224 (318)
T TIGR00742       213 HLS--HVDGVMVGR  224 (318)
T ss_pred             HHh--CCCEEEECH
Confidence            663  898887743

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=93.56  E-value=1.7  Score=38.24  Aligned_cols=114  Identities=15%  Similarity=0.261  Sum_probs=74.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e   96 (277)
                      +..+..+.+++.|++++|+  .|  +.+- .-.-..++++++++. +++|+.+.=-+.+++ .++.+.++|++.+.+=..
T Consensus        29 dp~~~a~~~~~~g~~~l~v--~dl~~~~~-g~~~~~~~i~~i~~~-~~~pi~~ggGI~~~e-d~~~~~~~Ga~~vvlgs~  103 (230)
T TIGR00007        29 DPVEAAKKWEEEGAERIHV--VDLDGAKE-GGPVNLPVIKKIVRE-TGVPVQVGGGIRSLE-DVEKLLDLGVDRVIIGTA  103 (230)
T ss_pred             CHHHHHHHHHHcCCCEEEE--EeCCcccc-CCCCcHHHHHHHHHh-cCCCEEEeCCcCCHH-HHHHHHHcCCCEEEEChH
Confidence            4445666678899999998  44  3332 112245789999986 677777766666665 456778899998854333


Q ss_pred             CCCCCHHHHHHHHhhC--CC-c--cc----------------c-hhhhhHHHHhcCCCeEEeec
Q psy11600         97 PVDNVPQVIRQIKEAG--MK-V--GQ----------------V-LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        97 ~~d~g~~~i~~i~~~~--~~-~--~d----------------~-p~~~i~~~~~~g~d~it~H~  138 (277)
                      ... .++.++++.+..  .. .  +|                . |.++++.+.+.|++.+++|.
T Consensus       104 ~l~-d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~  166 (230)
T TIGR00007       104 AVE-NPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTD  166 (230)
T ss_pred             Hhh-CHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEe
Confidence            332 455566654442  21 1  12                1 56788899999999999883

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=93.45  E-value=2.2  Score=42.05  Aligned_cols=144  Identities=16%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             hHHHHHhcCCCeEEEeccCCC--C-CHHHHHHHHhhCC-Ccc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHH
Q psy11600         79 WIEPMADANVDQYTFHVEPVD--N-VPQVIRQIKEAGM-KVG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIR  149 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~d--~-g~~~i~~i~~~~~-~~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~  149 (277)
                      .+....++|+|++-|-+....  . .++..+.+.+.-. ..+    +. |+...+...+++.|++=+|-.   ......+
T Consensus       269 da~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~---e~~~~~~  345 (454)
T PRK09427        269 DAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD---EDQAYID  345 (454)
T ss_pred             HHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC---CCHHHHH
Confidence            456678899999998754321  1 4666666665432 111    11 677777788999999999975   3344445


Q ss_pred             HHHHh---CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcH
Q psy11600        150 QIKEA---GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI  226 (277)
Q Consensus       150 ~I~~~---g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv  226 (277)
                      .++..   +++.=-++++..... ..++ ..+|.+++=+ .+|..|+.|.-..+.      ... ...+.+.||++.+|+
T Consensus       346 ~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l~------~~~-~~p~iLAGGL~peNV  415 (454)
T PRK09427        346 ALREALPKTCQIWKAISVGDTLP-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLLP------GQS-LDNVLLAGGLNPDNC  415 (454)
T ss_pred             HHHhhcCCCCeEEEEeecCchhh-hhhh-cCCCEEEEcC-CCCCCCCccChHHhh------hcc-cCCEEEECCCCHHHH
Confidence            55532   122222333332211 1222 2367766555 455557776543332      111 346889999999999


Q ss_pred             HHHHHccCC
Q psy11600        227 DECAKCLTG  235 (277)
Q Consensus       227 ~~~~~~gpg  235 (277)
                      .+..+.+|-
T Consensus       416 ~~ai~~~P~  424 (454)
T PRK09427        416 QQAAQLGCA  424 (454)
T ss_pred             HHHHhcCCC
Confidence            988777774

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=93.38  E-value=3.8  Score=37.44  Aligned_cols=70  Identities=21%  Similarity=0.340  Sum_probs=42.7

Q ss_pred             HHHHHHHHcCCCEEEEeccccc-cccCCCC---C-HHHHHHHHhcCCCCeeeeeeeccC-----------cHHhHHHHHh
Q psy11600         22 SESQNLLDSGADYLHLDVMDGT-FVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQN-----------PQQWIEPMAD   85 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~-fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~~-----------p~~~i~~l~~   85 (277)
                      +-.+.|.+.|+++  +++--+. |.-+..|   . .+.++.+++..++.++-++....|           -...++...+
T Consensus        25 ~ia~~L~~~Gv~~--iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~  102 (275)
T cd07937          25 PIAEALDEAGFFS--LEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAK  102 (275)
T ss_pred             HHHHHHHHcCCCE--EEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHH
Confidence            4456677888777  5554322 3221222   2 367788887777777777665432           2345777788


Q ss_pred             cCCCeEEE
Q psy11600         86 ANVDQYTF   93 (277)
Q Consensus        86 ag~d~i~~   93 (277)
                      +|++++++
T Consensus       103 ~g~~~iri  110 (275)
T cd07937         103 NGIDIFRI  110 (275)
T ss_pred             cCCCEEEE
Confidence            89998844

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.31  E-value=0.92  Score=41.92  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=56.7

Q ss_pred             ceEeeecccc-CcccHHHHHHHHHHcCCCEEEEeccccccccCC----C------CCH----HHHHHHHhcCCCCeeeee
Q psy11600          6 CMIGPSILNS-DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL----T------FGH----PVVKCLRNKIPKAFFETH   70 (277)
Q Consensus         6 ~~~~~s~~~~-d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~----~------~g~----~~v~~l~~~~~~~~~d~H   70 (277)
                      .-+..|+... |...+.+..+.+++.|+|++=+.+    .+||.    .      ..+    ++++++|+. +++|+.+=
T Consensus       100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~----sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vK  174 (299)
T cd02940         100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNF----SCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAK  174 (299)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEEC----CCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEE
Confidence            3477899988 998999999999888888844433    24553    1      112    456677764 57777766


Q ss_pred             eec--cCcHHhHHHHHhcCCCeEEE
Q psy11600         71 MMV--QNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        71 lmv--~~p~~~i~~l~~ag~d~i~~   93 (277)
                      |=-  .+..+.++.+.++|+|.+++
T Consensus       175 l~~~~~~~~~~a~~~~~~Gadgi~~  199 (299)
T cd02940         175 LTPNITDIREIARAAKEGGADGVSA  199 (299)
T ss_pred             CCCCchhHHHHHHHHHHcCCCEEEE
Confidence            532  23445678888999999984

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=93.27  E-value=2.8  Score=36.82  Aligned_cols=163  Identities=20%  Similarity=0.289  Sum_probs=77.3

Q ss_pred             HHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-c-------------HHhHHHHHhc
Q psy11600         23 ESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-P-------------QQWIEPMADA   86 (277)
Q Consensus        23 ~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-p-------------~~~i~~l~~a   86 (277)
                      .....++.|+|.+.+  +...|-..|++    ..++..++. .+  +.+|.|+.. .             .+.++.+.++
T Consensus        12 ~a~~A~~~GAdRiELc~~l~~GGlTPS~----g~i~~~~~~-~~--ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~   84 (201)
T PF03932_consen   12 DALAAEAGGADRIELCSNLEVGGLTPSL----GLIRQAREA-VD--IPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLREL   84 (201)
T ss_dssp             HHHHHHHTT-SEEEEEBTGGGT-B---H----HHHHHHHHH-TT--SEEEEE--SSSS-S---HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCCccCCCcCcCH----HHHHHHHhh-cC--CceEEEECCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence            344557789999776  44567788763    468888874 45  567888863 1             1247777888


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHH-hcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA-DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~-~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      |+|-+-|=+=..|+                .+.....+.|. .++.--+|||--- +.+.+..+.+.+            
T Consensus        85 GadG~VfG~L~~dg----------------~iD~~~~~~Li~~a~~~~~tFHRAf-D~~~d~~~al~~------------  135 (201)
T PF03932_consen   85 GADGFVFGALTEDG----------------EIDEEALEELIEAAGGMPVTFHRAF-DEVPDPEEALEQ------------  135 (201)
T ss_dssp             T-SEEEE--BETTS----------------SB-HHHHHHHHHHHTTSEEEE-GGG-GGSSTHHHHHHH------------
T ss_pred             CCCeeEEEeECCCC----------------CcCHHHHHHHHHhcCCCeEEEeCcH-HHhCCHHHHHHH------------
Confidence            88877433211122                01122333332 3456678888520 011112222221            


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh-CCCccEEEeCCCCcCcHHHHHH-ccC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK-CLT  234 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~-~~~~~i~vdGgV~~~tv~~~~~-~gp  234 (277)
                              ++ ..++--++|-  |.+  .-..+-++.++.+.+. ...+.|.+=|||+..|++.+.+ .|.
T Consensus       136 --------L~-~lG~~rVLTS--Gg~--~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~  193 (201)
T PF03932_consen  136 --------LI-ELGFDRVLTS--GGA--PTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGV  193 (201)
T ss_dssp             --------HH-HHT-SEEEES--TTS--SSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-
T ss_pred             --------HH-hcCCCEEECC--CCC--CCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCC
Confidence                    11 1123333432  221  1122234455554333 4578899999999999998877 443

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.27  E-value=4.1  Score=36.30  Aligned_cols=171  Identities=14%  Similarity=0.139  Sum_probs=102.3

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC-CC-c-c-----cc-hhhh
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MK-V-G-----QV-LQDW  122 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~-~~-~-~-----d~-p~~~  122 (277)
                      .++++.|.+. +=+++....=..+-.+.++.+.+.|...+-+=+.. ....+.|+.+++.- .. + +     .+ -.+.
T Consensus         6 ~~~~~~l~~~-~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~t-p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~   83 (222)
T PRK07114          6 IAVLTAMKAT-GMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRG-DFAHEVFAELVKYAAKELPGMILGVGSIVDAAT   83 (222)
T ss_pred             HHHHHHHHhC-CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHH
Confidence            3566777753 44444333322233335777888999977444432 23666777776432 21 2 1     11 4566


Q ss_pred             hHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC-CHHhHHHHHhh-cCceEEEEecCC-CCCchhhhhh
Q psy11600        123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT-PVDVIAEYIES-ADLVLIMTVEPG-FGGQKFMQDM  199 (277)
Q Consensus       123 i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i~~-~d~vl~mav~Pg-t~gq~~~~~~  199 (277)
                      ++..+++||+++-=..    ..+++++..++.    ++-.-||. +.+++...++. ++.   +=+-|. ..|       
T Consensus        84 a~~a~~aGA~FiVsP~----~~~~v~~~~~~~----~i~~iPG~~TpsEi~~A~~~Ga~~---vKlFPA~~~G-------  145 (222)
T PRK07114         84 AALYIQLGANFIVTPL----FNPDIAKVCNRR----KVPYSPGCGSLSEIGYAEELGCEI---VKLFPGSVYG-------  145 (222)
T ss_pred             HHHHHHcCCCEEECCC----CCHHHHHHHHHc----CCCEeCCCCCHHHHHHHHHCCCCE---EEECcccccC-------
Confidence            7889999999764321    235677777764    55666772 44444444322 333   234553 222       


Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCc--CcHHHHHHccCCC---CCcccc
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~--~tv~~~~~~gpg~---ggq~F~  242 (277)
                      ..-++.++.-+|++.+.--|||+.  +|+.+..++|...   |++.|.
T Consensus       146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~  193 (222)
T PRK07114        146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP  193 (222)
T ss_pred             HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence            233566666789999999999998  7999999987664   566654

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=93.17  E-value=0.47  Score=43.87  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=23.3

Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +++.+++.||||++|+.++.+.|.++
T Consensus       235 ~~~~leaSGGI~~~ni~~yA~tGvD~  260 (284)
T PRK06096        235 PHCTLSLAGGINLNTLKNYADCGIRL  260 (284)
T ss_pred             CCeEEEEECCCCHHHHHHHHhcCCCE
Confidence            45568899999999999999999997

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=93.08  E-value=1.5  Score=41.48  Aligned_cols=210  Identities=12%  Similarity=0.171  Sum_probs=119.3

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEE-----------------ecc-ccccccCCCC---CH-HHHHHHHhcCCCCee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHL-----------------DVM-DGTFVPNLTF---GH-PVVKCLRNKIPKAFF   67 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-----------------Dim-Dg~fvp~~~~---g~-~~v~~l~~~~~~~~~   67 (277)
                      |-.+++=+..-.+.++.+.+.|+..+=+                 ..- +..+.+.++|   |. .+++.+++...++|+
T Consensus        61 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pv  140 (344)
T PRK05286         61 PVGLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPL  140 (344)
T ss_pred             CCEECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcE
Confidence            4344444555567788887776655311                 111 1345555666   23 356667653356788


Q ss_pred             eeeeecc-------CcHHhHHHHHhcC--CCeEEEeccCCC--C---------CHHHHHHHHhhCC-----Ccccc----
Q psy11600         68 ETHMMVQ-------NPQQWIEPMADAN--VDQYTFHVEPVD--N---------VPQVIRQIKEAGM-----KVGQV----  118 (277)
Q Consensus        68 d~Hlmv~-------~p~~~i~~l~~ag--~d~i~~H~e~~d--~---------g~~~i~~i~~~~~-----~~~d~----  118 (277)
                      -+.+.-.       ..++|.+.+.+++  +|.+.+-+-.-.  +         -.++++++|+...     .|+-+    
T Consensus       141 ivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp  220 (344)
T PRK05286        141 GINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP  220 (344)
T ss_pred             EEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC
Confidence            8888643       3567777666665  898865542211  1         3468888888765     56544    


Q ss_pred             ------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCC
Q psy11600        119 ------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGG  192 (277)
Q Consensus       119 ------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~g  192 (277)
                            ....++.+.++|+|.|++|--   ... ... +...      ...                     ...-|.+|
T Consensus       221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt---~~~-~~~-~~~~------~~~---------------------~~~gg~SG  268 (344)
T PRK05286        221 DLSDEELDDIADLALEHGIDGVIATNT---TLS-RDG-LKGL------PNA---------------------DEAGGLSG  268 (344)
T ss_pred             CCCHHHHHHHHHHHHHhCCcEEEEeCC---ccc-ccc-cccc------ccC---------------------CCCCCccc
Confidence                  234567778899999999863   211 000 0000      000                     00113344


Q ss_pred             chhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHHH
Q psy11600        193 QKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVKW  251 (277)
Q Consensus       193 q~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~~  251 (277)
                      ....+-.++.+.++++..+ ++.+...|||.- +.+.+++.+|++.   |...+.  |....+|++
T Consensus       269 ~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~  334 (344)
T PRK05286        269 RPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVR  334 (344)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHH
Confidence            3333445566777766543 588888999963 4556667788885   554432  666666653

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.05  E-value=0.54  Score=43.23  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +++.+++-|||+++|+.++.+.|+++
T Consensus       228 ~~~~ieAsGgIt~~ni~~ya~~GvD~  253 (273)
T PRK05848        228 PHVLLEASGNITLENINAYAKSGVDA  253 (273)
T ss_pred             CCeEEEEECCCCHHHHHHHHHcCCCE
Confidence            45678899999999999999999997

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=93.02  E-value=3.3  Score=40.10  Aligned_cols=173  Identities=12%  Similarity=0.139  Sum_probs=96.5

Q ss_pred             HHHHHHhcCCCCeeeeeeecc-CcHHh---HHHHHhcCCCeEEEeccCCC------C----------CHHHHHHHHhhCC
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQ-NPQQW---IEPMADANVDQYTFHVEPVD------N----------VPQVIRQIKEAGM  113 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~-~p~~~---i~~l~~ag~d~i~~H~e~~d------~----------g~~~i~~i~~~~~  113 (277)
                      .++.+++..++.++-+.++-. +++++   .+.+.++|+|+|.+-+-.-.      +          --++++++++.+.
T Consensus        89 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~  168 (420)
T PRK08318         89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSR  168 (420)
T ss_pred             HHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccC
Confidence            344555544567888888877 66654   56667789999976543211      1          3456777777776


Q ss_pred             Ccccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE
Q psy11600        114 KVGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT  185 (277)
Q Consensus       114 ~~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma  185 (277)
                      .|+.+        ....++.+.++|+|.+++--    ++...            .++.+.|.  .-.+.+..      =+
T Consensus       169 ~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~N----t~~~~------------~~id~~~~--~~~p~~~~------~~  224 (420)
T PRK08318        169 LPVIVKLTPNITDIREPARAAKRGGADAVSLIN----TINSI------------TGVDLDRM--IPMPIVNG------KS  224 (420)
T ss_pred             CcEEEEcCCCcccHHHHHHHHHHCCCCEEEEec----ccCcc------------cccccccc--CCCceecC------CC
Confidence            66654        23556667788999888631    11100            00110000  00000000      00


Q ss_pred             ecCCCCCchhhhhhhhhHHHHHhhC--CCccEEEeCCCC-cCcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600        186 VEPGFGGQKFMQDMMPKVKWLRENY--PTLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM--QDMMPKVK  250 (277)
Q Consensus       186 v~Pgt~gq~~~~~~l~kI~~l~~~~--~~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~--~~~~~kI~  250 (277)
                      ..=|.+|....+-.++.|.++++..  +++.|.--|||. .+.+.+++.+|++.   ++..+.  +....+|.
T Consensus       225 ~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~  297 (420)
T PRK08318        225 SHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMI  297 (420)
T ss_pred             CcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHH
Confidence            0124566555566678888887754  368888889985 23444556688885   554444  44444444

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=92.98  E-value=1.2  Score=41.18  Aligned_cols=113  Identities=15%  Similarity=0.049  Sum_probs=73.6

Q ss_pred             CcccHHHHHHHHHHcCCCEE--EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         16 DLSNLHSESQNLLDSGADYL--HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~--h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      |...+.+.++.+++.|++.+  |+|.--    +.-.+..+.++++|+. ++.|+.+.. +.. .+..+.+.++|+|.|.+
T Consensus       127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~----~~~~~~~~~i~~l~~~-~~~pvivK~-v~s-~~~a~~a~~~G~d~I~v  199 (299)
T cd02809         127 DREITEDLLRRAEAAGYKALVLTVDTPV----LGRRLTWDDLAWLRSQ-WKGPLILKG-ILT-PEDALRAVDAGADGIVV  199 (299)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCC----CCCCCCHHHHHHHHHh-cCCCEEEee-cCC-HHHHHHHHHCCCCEEEE
Confidence            66777788888899999963  333322    1122456899999986 567777653 333 45678899999999998


Q ss_pred             ecc---CCCCCH---HHHHHHHhhCC--Ccccc------hhhhhHHHHhcCCCeEEe
Q psy11600         94 HVE---PVDNVP---QVIRQIKEAGM--KVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        94 H~e---~~d~g~---~~i~~i~~~~~--~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      |--   ..++++   ..+.++++...  .++-.      +.+.++.++ +|||.|.+
T Consensus       200 ~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~V~i  255 (299)
T cd02809         200 SNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADAVLI  255 (299)
T ss_pred             cCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence            531   123333   34555555432  33322      788888885 89998887

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=92.94  E-value=0.2  Score=45.90  Aligned_cols=70  Identities=23%  Similarity=0.286  Sum_probs=44.6

Q ss_pred             hHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHH-HHhhCCCCeEEEeCCCCccCHHHh
Q psy11600        202 KVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDEC  275 (277)
Q Consensus       202 kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~-l~~~~~~~~I~VDGGI~~~~~~~~  275 (277)
                      .++.+++..+ +..+.|    ...|.+++   .++|+++ +=..|.++.++++.+ +++. ++..|++.||||++|+..+
T Consensus       170 ~v~~~r~~~~~~~~I~v----ev~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~  244 (269)
T cd01568         170 AVKRARAAAPFEKKIEV----EVETLEEAEEALEAGADIIMLDNMSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAY  244 (269)
T ss_pred             HHHHHHHhCCCCCeEEE----ecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHH
Confidence            4666777665 444544    45666665   4467775 334566655554333 2322 5678999999999999887


Q ss_pred             h
Q psy11600        276 A  276 (277)
Q Consensus       276 ~  276 (277)
                      +
T Consensus       245 a  245 (269)
T cd01568         245 A  245 (269)
T ss_pred             H
Confidence            5

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=92.91  E-value=3.2  Score=39.10  Aligned_cols=74  Identities=12%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeee---------ec-cCcHHhHHH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHM---------MV-QNPQQWIEP   82 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hl---------mv-~~p~~~i~~   82 (277)
                      .+...+.++++.+.+.|+..+++-  +|.. |...+.  .++++.+|+.+|++.+.+--         -. .-..+.++.
T Consensus        70 ls~eeI~e~~~~~~~~G~~~i~l~--gG~~-p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~  146 (343)
T TIGR03551        70 LSLEEIAERAAEAWKAGATEVCIQ--GGIH-PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKR  146 (343)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEE--eCCC-CCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            566777888889999999986655  6654 544443  47788998876665443310         01 123567999


Q ss_pred             HHhcCCCeE
Q psy11600         83 MADANVDQY   91 (277)
Q Consensus        83 l~~ag~d~i   91 (277)
                      +.+||++.+
T Consensus       147 LkeAGl~~i  155 (343)
T TIGR03551       147 LKEAGLDSM  155 (343)
T ss_pred             HHHhCcccc
Confidence            999999988

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=92.90  E-value=0.95  Score=38.76  Aligned_cols=117  Identities=17%  Similarity=0.292  Sum_probs=77.9

Q ss_pred             eccccCcccHHHHHHHHHHcCCC-EEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600         11 SILNSDLSNLHSESQNLLDSGAD-YLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM   72 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~-~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm   72 (277)
                      .+|..+..++.+-++.+++.|-. ++|+|..+|--  |=-++.+++++.-+  |+=-++.                 -+.
T Consensus        28 flL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~--~~e~~i~fi~~~~~--pdGIISTk~~~i~~Akk~~~~aIqR~F  103 (181)
T COG1954          28 FLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS--NDEVAIEFIKEVIK--PDGIISTKSNVIKKAKKLGILAIQRLF  103 (181)
T ss_pred             EEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccC--CchHHHHHHHHhcc--CCeeEEccHHHHHHHHHcCCceeeeee
Confidence            57889999999999999987654 68999999743  33355555544331  3322221                 222


Q ss_pred             ccC---cHHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600         73 VQN---PQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT  135 (277)
Q Consensus        73 v~~---p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it  135 (277)
                      .-|   .++-++.+.+.++|.+    |++.| .|++++.+.+++..|+-.     -.+-+.+-.++||-.+|
T Consensus       104 ilDS~Al~~~~~~i~~~~pD~i----EvLPGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avS  171 (181)
T COG1954         104 ILDSIALEKGIKQIEKSEPDFI----EVLPGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVS  171 (181)
T ss_pred             eecHHHHHHHHHHHHHcCCCEE----EEcCcccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEe
Confidence            223   4445777777888877    67777 899999999998877643     34455556666666655

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=92.88  E-value=2.9  Score=36.67  Aligned_cols=106  Identities=11%  Similarity=0.027  Sum_probs=68.1

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP   97 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~   97 (277)
                      ....+.++.+.+.|+|.+|+-  ++       ...+.++++++.  ++++-.  .+ .+.+.++.+.++|+|++.+|.-.
T Consensus        67 ~~~~~~~~~~~~~g~d~v~l~--~~-------~~~~~~~~~~~~--~i~~i~--~v-~~~~~~~~~~~~gad~i~~~~~~  132 (236)
T cd04730          67 PDFEALLEVALEEGVPVVSFS--FG-------PPAEVVERLKAA--GIKVIP--TV-TSVEEARKAEAAGADALVAQGAE  132 (236)
T ss_pred             cCHHHHHHHHHhCCCCEEEEc--CC-------CCHHHHHHHHHc--CCEEEE--eC-CCHHHHHHHHHcCCCEEEEeCcC
Confidence            357778899999999998862  22       236778888863  444422  23 34466778888999999776421


Q ss_pred             CCC--------CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600         98 VDN--------VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        98 ~d~--------g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H  137 (277)
                      ..|        ....++++++....|+-.     +.+-+..+.++|+|.|.+-
T Consensus       133 ~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg  185 (236)
T cd04730         133 AGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG  185 (236)
T ss_pred             CCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence            111        245788888776655533     3233444456889887774

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=92.76  E-value=2  Score=39.72  Aligned_cols=160  Identities=14%  Similarity=0.068  Sum_probs=91.2

Q ss_pred             CCCeeeeeeeccCcHHhHHHH---Hhc---CCCeEEEeccCCC--C----------CHHHHHHHHhhCCCcccc---h--
Q psy11600         63 PKAFFETHMMVQNPQQWIEPM---ADA---NVDQYTFHVEPVD--N----------VPQVIRQIKEAGMKVGQV---L--  119 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~~~i~~l---~~a---g~d~i~~H~e~~d--~----------g~~~i~~i~~~~~~~~d~---p--  119 (277)
                      ++.|+-+.++-. ++++++.+   .+.   |+|++-+-+-...  +          --++++++|+.+..|+-+   |  
T Consensus        90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~  168 (294)
T cd04741          90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT  168 (294)
T ss_pred             cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            467899999877 88775544   343   6899866443211  1          345677777777666644   2  


Q ss_pred             -----hhhhHHHHhc--CCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--CCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600        120 -----QDWIEPMADA--NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--KTPVDVIAEYIESADLVLIMTVEPGF  190 (277)
Q Consensus       120 -----~~~i~~~~~~--g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~t~~~~i~~~i~~~d~vl~mav~Pgt  190 (277)
                           .+.++.+.++  |+|.||.+-    ++.            .++.+.+  .++.      +..-      .-.-|.
T Consensus       169 ~~~~~~~~a~~l~~~~~G~~gi~~~N----t~~------------~~~~id~~~~~~~------~~~~------~~~gG~  220 (294)
T cd04741         169 DPAQFDTLAEALNAFACPISFITATN----TLG------------NGLVLDPERETVV------LKPK------TGFGGL  220 (294)
T ss_pred             CHHHHHHHHHHHhccccCCcEEEEEc----cCC------------ccccccCCCCCcc------cCCC------CCCCCc
Confidence                 2333444556  888888642    110            0111111  0000      0000      001144


Q ss_pred             CCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCccc--ccCHHHHHHH
Q psy11600        191 GGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQKF--MQDMMPKVKW  251 (277)
Q Consensus       191 ~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F--~~~~~~kI~~  251 (277)
                      +|....+..+..|.++++..+ ++.|.-.|||.- +.+.+++.+|++.   ++..+  .+...++|.+
T Consensus       221 SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~  288 (294)
T cd04741         221 AGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEK  288 (294)
T ss_pred             CchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHH
Confidence            555556667788888877765 688999999853 4455566788885   55544  3677777653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=92.71  E-value=3  Score=39.75  Aligned_cols=177  Identities=14%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      .+...+.++++.+.+.|+..+|+=  -|.--+...+  =.+.++.+++.+|.+.+.+..  . -.+.++.|.++|++.++
T Consensus       103 Ls~eEI~~~a~~~~~~Gv~~i~lv--gGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~--l-t~e~~~~Lk~aGv~r~~  177 (366)
T TIGR02351       103 LNEEEIEREIEAIKKSGFKEILLV--TGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP--L-NEEEYKKLVEAGLDGVT  177 (366)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEe--eCCCCCCCCHHHHHHHHHHHHHhCCcccccccc--C-CHHHHHHHHHcCCCEEE
Confidence            355667778888888999987763  3432222222  246777888766655554432  2 33457899999999997


Q ss_pred             EeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCCCCCHHhH
Q psy11600         93 FHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKPKTPVDVI  171 (277)
Q Consensus        93 ~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p~t~~~~i  171 (277)
                      +-.|+.+  +...+.+...+.. ++ ++                      ..-+.++.++++|+. .+.|+-.|.+-...
T Consensus       178 i~lET~~--~~~y~~i~~~g~~-h~-~~----------------------~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~  231 (366)
T TIGR02351       178 VYQETYN--EKKYKKHHLAGKK-KD-FR----------------------YRLNTPERAAKAGMRKIGIGALLGLDDWRT  231 (366)
T ss_pred             EEeecCC--HHHHHhcCcCCCC-CC-HH----------------------HHHHHHHHHHHcCCCeeceeEEEeCchhHH
Confidence            7777765  3344333211110 00 00                      112344455566665 46666666553211


Q ss_pred             HH--------HHhhc-----CceEEEEecCCCC---Cch-h-hhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        172 AE--------YIESA-----DLVLIMTVEPGFG---GQK-F-MQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       172 ~~--------~i~~~-----d~vl~mav~Pgt~---gq~-~-~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      ..        ++...     .-+.+.-++|..+   .+. + -.++++.|..+|-.+|+..|.+.||=.
T Consensus       232 d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~  300 (366)
T TIGR02351       232 DAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRES  300 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCC
Confidence            11        11111     2233334555432   111 1 345666677777788999999988864

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like

Probab=92.68  E-value=3  Score=38.81  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=48.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCC-------CCCHHHHHHHHhcCCCCeeeeeeeccCc----------HHhHH
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNL-------TFGHPVVKCLRNKIPKAFFETHMMVQNP----------QQWIE   81 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~-------~~g~~~v~~l~~~~~~~~~d~Hlmv~~p----------~~~i~   81 (277)
                      .+.++++.|.++|++++.+|=-.-.+..+-       .+--..++.+++.-++..+-+|+--.|.          ...++
T Consensus       156 ~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~  235 (332)
T cd03311         156 ALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAE  235 (332)
T ss_pred             HHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHH
Confidence            355788889999999999885442222211       1122344444442246677778877777          56677


Q ss_pred             HHHhcCCCeEEEec
Q psy11600         82 PMADANVDQYTFHV   95 (277)
Q Consensus        82 ~l~~ag~d~i~~H~   95 (277)
                      .+.+.++|.+++.+
T Consensus       236 ~l~~~~vd~~~le~  249 (332)
T cd03311         236 YIFELDVDVFFLEY  249 (332)
T ss_pred             HHHhCCCCEEEEEE
Confidence            88888888884444

Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=92.66  E-value=7.5  Score=35.10  Aligned_cols=115  Identities=14%  Similarity=0.123  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHHcCCCEEEEecc-----cc-cc--ccCCCCCHHHHHHHHhcCCCCeeeeeee--ccCcHHhHHHHHhcCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVM-----DG-TF--VPNLTFGHPVVKCLRNKIPKAFFETHMM--VQNPQQWIEPMADANV   88 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~Dim-----Dg-~f--vp~~~~g~~~v~~l~~~~~~~~~d~Hlm--v~~p~~~i~~l~~ag~   88 (277)
                      ...+-++.|.+.|+++  +.+-     .+ .|  .|...=..+.++.+++..++.++-+-+-  ..+ .+.++...++|+
T Consensus        23 ~k~~i~~~L~~~Gv~~--iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~~g~   99 (263)
T cd07943          23 QVRAIARALDAAGVPL--IEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGT-VDDLKMAADLGV   99 (263)
T ss_pred             HHHHHHHHHHHcCCCE--EEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccC-HHHHHHHHHcCC
Confidence            3445567788888877  4443     10 11  1221113477888877656655543221  233 456888889999


Q ss_pred             CeEEEeccCCC--CCHHHHHHHHhhCCCcc----cc----h---hhhhHHHHhcCCCeEEe
Q psy11600         89 DQYTFHVEPVD--NVPQVIRQIKEAGMKVG----QV----L---QDWIEPMADANVDQYTF  136 (277)
Q Consensus        89 d~i~~H~e~~d--~g~~~i~~i~~~~~~~~----d~----p---~~~i~~~~~~g~d~it~  136 (277)
                      +++.+=.-..+  .....++.+|+....+.    +.    |   .++++.+.++|+|.|++
T Consensus       100 ~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l  160 (263)
T cd07943         100 DVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV  160 (263)
T ss_pred             CEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            99854222222  24556666666654321    11    3   44457778889999887

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=92.59  E-value=0.12  Score=44.48  Aligned_cols=115  Identities=20%  Similarity=0.371  Sum_probs=64.1

Q ss_pred             ccccCcccHHHHHHHHHHcCCC-EEEEeccccccccCCCCCHHHHHHHHhcC-CCCeee-----------------eeee
Q psy11600         12 ILNSDLSNLHSESQNLLDSGAD-YLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFE-----------------THMM   72 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~-~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d-----------------~Hlm   72 (277)
                      ++..|..+|.+.++++.+.|-. ++|+|..+|     ++-....++.|++.+ ++=-+.                 --+.
T Consensus        25 Ll~g~I~~l~~~v~~~~~~gK~vfVHiDli~G-----l~~D~~~i~~L~~~~~~dGIISTk~~~i~~Ak~~gl~tIqRiF   99 (175)
T PF04309_consen   25 LLTGDIGNLKDIVKRLKAAGKKVFVHIDLIEG-----LSRDEAGIEYLKEYGKPDGIISTKSNLIKRAKKLGLLTIQRIF   99 (175)
T ss_dssp             E-SEECCCHHHHHHHHHHTT-EEEEECCGEET-----B-SSHHHHHHHHHTT--SEEEESSHHHHHHHHHTT-EEEEEEE
T ss_pred             EEcCcHHHHHHHHHHHHHcCCEEEEEehhcCC-----CCCCHHHHHHHHHcCCCcEEEeCCHHHHHHHHHcCCEEEEEee
Confidence            6778999999999999988654 589999997     233455666666643 231111                 1122


Q ss_pred             ccC---cHHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600         73 VQN---PQQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT  135 (277)
Q Consensus        73 v~~---p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it  135 (277)
                      ..|   ...-++.+.+.++|.+    |++.| .|++++.+++.+..|+-.     -.+-+....++||.-||
T Consensus       100 liDS~al~~~~~~i~~~~PD~v----EilPg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVS  167 (175)
T PF04309_consen  100 LIDSSALETGIKQIEQSKPDAV----EILPGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVS  167 (175)
T ss_dssp             -SSHHHHHHHHHHHHHHT-SEE----EEESCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred             eecHHHHHHHHHHHhhcCCCEE----EEchHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence            222   2222445555555554    44444 466666666665555433     34455556666666665

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=92.58  E-value=1.5  Score=43.45  Aligned_cols=170  Identities=12%  Similarity=0.099  Sum_probs=93.6

Q ss_pred             HHhHHHHHhcCCCeEEEeccCCCC-CHH---HHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHH
Q psy11600         77 QQWIEPMADANVDQYTFHVEPVDN-VPQ---VIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ  150 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~~d~-g~~---~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~  150 (277)
                      .+.++.+.++|+.++  ++..-+. ...   .++.+++.+..  .-.+.-++.+...+.|+|.  +|+.   ...-....
T Consensus       310 ~~~l~~~l~~Gv~~v--qlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~adG--vHl~---~~d~~~~~  382 (502)
T PLN02898        310 VDAVRAAIEGGATIV--QLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADG--VHLG---QSDMPVRL  382 (502)
T ss_pred             HHHHHHHHHcCCCEE--EEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCCE--EEeC---hHhcCHHH
Confidence            346888889999998  6653322 222   33333333321  1122446677778889985  5664   21111222


Q ss_pred             HHH-hCCccceeeCCCCCHHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHH
Q psy11600        151 IKE-AGMKVGLAIKPKTPVDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE  228 (277)
Q Consensus       151 I~~-~g~~~g~~i~p~t~~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~  228 (277)
                      .++ .+...-+|....+. +.+... -..+|++.+=.+-|..+-...-+--++.++++.+. .++-+...|||+.+++.+
T Consensus       383 ~r~~~~~~~~iG~S~h~~-~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~-~~~Pv~aiGGI~~~~~~~  460 (502)
T PLN02898        383 ARSLLGPGKIIGVSCKTP-EQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEA-SKLPVVAIGGISASNAAS  460 (502)
T ss_pred             HHHhcCCCCEEEEeCCCH-HHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc-CCCCEEEECCCCHHHHHH
Confidence            333 23334566666554 333333 34578865322333211000001113445554432 356788899999999999


Q ss_pred             HHHccCC---C---CCcccc-cCHHHHHHHHHhh
Q psy11600        229 CAKCLTG---F---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       229 ~~~~gpg---~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      +.++|++   +   ++..+. ++..+.++++++.
T Consensus       461 ~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~  494 (502)
T PLN02898        461 VMESGAPNLKGVAVVSALFDQEDVLKATRKLHAI  494 (502)
T ss_pred             HHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHH
Confidence            9999987   4   566665 5778888877764

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=92.56  E-value=1.8  Score=42.38  Aligned_cols=176  Identities=9%  Similarity=0.121  Sum_probs=95.9

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC-CHHHH---HHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN-VPQVI---RQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i---~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      |.+..++++.+.++|++++  .+-.-+. ...+.   +.+++.+..  .-...-++++.-.+.||+.|-+-.|   +.. 
T Consensus       216 Vtd~~~~ve~aL~aGv~~V--QLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVHLGQe---DL~-  289 (437)
T PRK12290        216 VVDDVEWIERLLPLGINTV--QLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVHLGQE---DLE-  289 (437)
T ss_pred             EeCCHHHHHHHHhCCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEEcChH---Hcc-
Confidence            4444568999999999998  6654433 22333   333333321  1111345677778889986544333   322 


Q ss_pred             HHHHHHHh-CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCc-hhhhhhhhhHHHHHhhC--------CCccEE
Q psy11600        147 VIRQIKEA-GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQ-KFMQDMMPKVKWLRENY--------PTLNIE  216 (277)
Q Consensus       147 ~~~~I~~~-g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq-~~~~~~l~kI~~l~~~~--------~~~~i~  216 (277)
                       ....|++ |...-+|+...+.-+.....-..+|++.+=.+-|-+.=+ ..-+-=++.++++.+..        ..+-+.
T Consensus       290 -~~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVV  368 (437)
T PRK12290        290 -EANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTV  368 (437)
T ss_pred             -hhhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEE
Confidence             1122322 222345555544322222222346876544444422110 11112244454444433        257889


Q ss_pred             EeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        217 VDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       217 vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      ..|||+..++.++.++|++.   -+..+. ++..+.++++++.
T Consensus       369 AIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~  411 (437)
T PRK12290        369 AIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQV  411 (437)
T ss_pred             EECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHH
Confidence            99999999999999999985   334444 4677888888764

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=92.55  E-value=1.6  Score=45.75  Aligned_cols=53  Identities=15%  Similarity=0.028  Sum_probs=37.7

Q ss_pred             hhHHHHHhhCC--CccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600        201 PKVKWLRENYP--TLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR  253 (277)
Q Consensus       201 ~kI~~l~~~~~--~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~  253 (277)
                      +.++++.+...  .+-+...|||+.+++.++.++|+++   .+..+. ++..+.+++++
T Consensus       153 ~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~  211 (755)
T PRK09517        153 DGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELR  211 (755)
T ss_pred             HHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHH
Confidence            44555555554  3778899999999999999999996   344443 45666666555

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=92.54  E-value=2.5  Score=36.40  Aligned_cols=100  Identities=8%  Similarity=0.032  Sum_probs=63.2

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV  101 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g  101 (277)
                      ++++...+.|+|.+|.        |.  ++++.++.-+.+  +.+.-..  +.+|.+ +....+.|+||+-|..-..-+|
T Consensus        75 d~~~~A~~~gAdgv~~--------p~--~~~~~~~~~~~~--~~~~i~G--~~t~~e-~~~A~~~Gadyv~~Fpt~~~~G  139 (187)
T PRK07455         75 EDLEEAIAAGAQFCFT--------PH--VDPELIEAAVAQ--DIPIIPG--ALTPTE-IVTAWQAGASCVKVFPVQAVGG  139 (187)
T ss_pred             HHHHHHHHcCCCEEEC--------CC--CCHHHHHHHHHc--CCCEEcC--cCCHHH-HHHHHHCCCCEEEECcCCcccC
Confidence            6777778889998753        33  344444433322  3333344  667766 4455678999998843222358


Q ss_pred             HHHHHHHHhhCC-Ccccc----hhhhhHHHHhcCCCeEEe
Q psy11600        102 PQVIRQIKEAGM-KVGQV----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       102 ~~~i~~i~~~~~-~~~d~----p~~~i~~~~~~g~d~it~  136 (277)
                      +..+++++.... .|+-.    ..+-++.+.++|++.+.+
T Consensus       140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav  179 (187)
T PRK07455        140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGL  179 (187)
T ss_pred             HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEE
Confidence            999999998763 45432    455666677788887765

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=92.51  E-value=5.9  Score=36.55  Aligned_cols=67  Identities=19%  Similarity=0.376  Sum_probs=39.4

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccc-----cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFV-----PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV   95 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fv-----p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~   95 (277)
                      -+-++.|.+.|++.  +.+  |.|+     |.+.--.+.++.+++. ++..+-+  ++.| .+.++...++|++++++=+
T Consensus        29 ~~ia~~L~~~Gv~~--IEv--gsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~--l~~~-~~~ie~A~~~g~~~v~i~~  100 (287)
T PRK05692         29 IALIDRLSAAGLSY--IEV--ASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAA--LTPN-LKGLEAALAAGADEVAVFA  100 (287)
T ss_pred             HHHHHHHHHcCCCE--EEe--CCCcCcccccccccHHHHHHhhhcc-CCCeEEE--EecC-HHHHHHHHHcCCCEEEEEE
Confidence            34556677788776  333  4554     4433234667777653 5544432  3444 3457888899999985443

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=92.50  E-value=0.54  Score=43.79  Aligned_cols=128  Identities=18%  Similarity=0.148  Sum_probs=79.4

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccc---ccccCCCCC----------HHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG---TFVPNLTFG----------HPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg---~fvp~~~~g----------~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      .+.+-|+..|...+.+..+.+.+.|+|.  +|+-=|   .+|-.=.+|          -++|+++++. .++|+.+=+-+
T Consensus        55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~--IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-~~~pvsvKiR~  131 (309)
T PF01207_consen   55 PLIVQLFGNDPEDLAEAAEIVAELGFDG--IDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-VPIPVSVKIRL  131 (309)
T ss_dssp             TEEEEEE-S-HHHHHHHHHHHCCTT-SE--EEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEES
T ss_pred             ceeEEEeeccHHHHHHHHHhhhccCCcE--EeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-cccceEEeccc
Confidence            4677889999999999999988867777  776332   111111122          4677888876 66888887777


Q ss_pred             cC------cHHhHHHHHhcCCCeEEEeccCCC----C--CHHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCeEE
Q psy11600         74 QN------PQQWIEPMADANVDQYTFHVEPVD----N--VPQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQYT  135 (277)
Q Consensus        74 ~~------p~~~i~~l~~ag~d~i~~H~e~~d----~--g~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~it  135 (277)
                      ..      ..+.++.+.++|++.+|+|.-.-.    +  -.+.|+.+++....|+    |+  +++.-+.+...|+|.|-
T Consensus       132 g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM  211 (309)
T PF01207_consen  132 GWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM  211 (309)
T ss_dssp             ECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred             ccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence            54      345688889999999999976421    1  4556677776666554    22  67776666666888777


Q ss_pred             ee
Q psy11600        136 FH  137 (277)
Q Consensus       136 ~H  137 (277)
                      +-
T Consensus       212 ig  213 (309)
T PF01207_consen  212 IG  213 (309)
T ss_dssp             ES
T ss_pred             Ec
Confidence            63

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional

Probab=92.41  E-value=2.1  Score=44.84  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCC--------CCHHHHHHHHhcCC----CCeeeeeeeccCcHHhHHHHHhc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLT--------FGHPVVKCLRNKIP----KAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--------~g~~~v~~l~~~~~----~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      -+.+|++.|+++|++++.+|==.  +.-...        +=...++.++....    +..+..|+--.|....++.+.+.
T Consensus       582 al~~Ev~~L~~aG~~~IQiDEPa--l~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~i~~~i~~l  659 (758)
T PRK05222        582 AIRDEVLDLEAAGIKIIQIDEPA--LREGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNDIIDAIAAL  659 (758)
T ss_pred             HHHHHHHHHHHcCCCEEEeeCch--hhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccChHHHHHHHHhC
Confidence            46688999999999999988322  211111        00223455554332    35677787777888888888888


Q ss_pred             CCCeEEEeccCC
Q psy11600         87 NVDQYTFHVEPV   98 (277)
Q Consensus        87 g~d~i~~H~e~~   98 (277)
                      .+|.+  ++|..
T Consensus       660 ~vD~~--~lE~~  669 (758)
T PRK05222        660 DADVI--SIETS  669 (758)
T ss_pred             CCCEE--EEEec
Confidence            99988  66643

>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase

Probab=92.41  E-value=6.7  Score=41.12  Aligned_cols=77  Identities=21%  Similarity=0.321  Sum_probs=52.6

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCC--------CHHHHHHHHh---cCC-CCeeeeeeeccCcHHhHHHHHhc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--------GHPVVKCLRN---KIP-KAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--------g~~~v~~l~~---~~~-~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.++++.|+++|++++.+|  |-.+.-.+..        -...++.++.   ..+ +..+.+|+--.|..+.++.+.+.
T Consensus       576 a~~~ev~~L~~aG~~~IQID--EPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l  653 (750)
T TIGR01371       576 AIRDEVLDLEEAGIKIIQID--EPALREGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADL  653 (750)
T ss_pred             HHHHHHHHHHHcCCCEEEEe--CchhhhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhC
Confidence            35688999999999999888  3222211111        1245566654   233 46788888888888888888889


Q ss_pred             CCCeEEEeccCCC
Q psy11600         87 NVDQYTFHVEPVD   99 (277)
Q Consensus        87 g~d~i~~H~e~~d   99 (277)
                      .+|.+  |+|...
T Consensus       654 ~vD~i--~lE~~r  664 (750)
T TIGR01371       654 DADVI--SIEASR  664 (750)
T ss_pred             CCCEE--EEEecC
Confidence            99999  666543

This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=92.35  E-value=8.1  Score=34.76  Aligned_cols=88  Identities=11%  Similarity=0.060  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+...+.|.+++|++..||..  .-.-..++++++.+. ...|+.+.==+.+.+ .++.+.++|++.+.+=-.+.
T Consensus        32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~-~~~~v~vgGGIrs~e-~~~~~l~~Ga~~vvigT~a~  107 (243)
T TIGR01919        32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKL-LVVVEELSGGRRDDS-SLRAALTGGRARVNGGTAAL  107 (243)
T ss_pred             CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHH-CCCCEEEcCCCCCHH-HHHHHHHcCCCEEEECchhh
Confidence            44567777888999999999999876  233456789999876 445555555555544 56677889999996544433


Q ss_pred             CCCHHHHHHHHhh
Q psy11600         99 DNVPQVIRQIKEA  111 (277)
Q Consensus        99 d~g~~~i~~i~~~  111 (277)
                      . .|.+++.+.+.
T Consensus       108 ~-~p~~~~~~~~~  119 (243)
T TIGR01919       108 E-NPWWAAAVIRY  119 (243)
T ss_pred             C-CHHHHHHHHHH
Confidence            2 57777777654

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=92.30  E-value=1.1  Score=40.85  Aligned_cols=169  Identities=12%  Similarity=0.115  Sum_probs=95.9

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCC--CCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCCh--
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNV--  144 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d--~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~--  144 (277)
                      .+|.++...+.++||+.+++.-|..-  |+...++++|+.+..|+..     -...|.+-..+|||.|.+-+.   .+  
T Consensus        68 ~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~---~L~~  144 (254)
T PF00218_consen   68 FDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAA---ILSD  144 (254)
T ss_dssp             -SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGG---GSGH
T ss_pred             CCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHH---hCCH
Confidence            37888999999999999999988753  4889999999998887754     345667778999999999875   33  


Q ss_pred             ---HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCC
Q psy11600        145 ---PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGG  220 (277)
Q Consensus       145 ---~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGg  220 (277)
                         .++.+..+..|+.+=+-+.   ..++++..+ .++..+ +.||-- ....| +--++.-..+.+..| ++-.+.-+|
T Consensus       145 ~~l~~l~~~a~~lGle~lVEVh---~~~El~~al-~~~a~i-iGINnR-dL~tf-~vd~~~~~~l~~~ip~~~~~iseSG  217 (254)
T PF00218_consen  145 DQLEELLELAHSLGLEALVEVH---NEEELERAL-EAGADI-IGINNR-DLKTF-EVDLNRTEELAPLIPKDVIVISESG  217 (254)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEES---SHHHHHHHH-HTT-SE-EEEESB-CTTTC-CBHTHHHHHHHCHSHTTSEEEEESS
T ss_pred             HHHHHHHHHHHHcCCCeEEEEC---CHHHHHHHH-HcCCCE-EEEeCc-cccCc-ccChHHHHHHHhhCccceeEEeecC
Confidence               2344444455543222221   223444444 223222 334421 11111 112344556666665 455666788


Q ss_pred             CC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHH
Q psy11600        221 VG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWL  252 (277)
Q Consensus       221 V~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l  252 (277)
                      |. .+.+..+.++|.+.   |...+. ++.-+++++|
T Consensus       218 I~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L  254 (254)
T PF00218_consen  218 IKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL  254 (254)
T ss_dssp             -SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence            86 35555666666663   444444 4677777664

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=92.20  E-value=4.5  Score=35.65  Aligned_cols=119  Identities=13%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC--Ceeeeeeec--------------
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK--AFFETHMMV--------------   73 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~--~~~d~Hlmv--------------   73 (277)
                      |=+++.+...+++ ++.+.+.|++.  +++--. ..    -.++.++++.+.++.  +.+.+...-              
T Consensus        76 pv~~~ggi~~~~d-~~~~~~~G~~~--vilg~~-~l----~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~  147 (232)
T TIGR03572        76 PLTVGGGIRSLED-AKKLLSLGADK--VSINTA-AL----ENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNG  147 (232)
T ss_pred             CEEEECCCCCHHH-HHHHHHcCCCE--EEEChh-Hh----cCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCC
Confidence            4455666666654 44566778998  544322 22    257788888887753  333443322              


Q ss_pred             -----cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         74 -----QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        74 -----~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                           .++.+.++.+.++|++.+++|--..++     ..++++++++....|+-.      +++..+.+.+.||+.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v  226 (232)
T TIGR03572       148 RRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA  226 (232)
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence                 235677899999999999998521221     467788888876655533      444444467777777665

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=92.11  E-value=4.1  Score=36.96  Aligned_cols=166  Identities=12%  Similarity=0.050  Sum_probs=94.3

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChH--
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVP--  145 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~--  145 (277)
                      +|.++...+.++||..+++.-|..  .|..+.++++|+....|+..     -...+.+-..+|||-|.+++.   ...  
T Consensus        62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~---~L~~~  138 (247)
T PRK13957         62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVR---ILTPS  138 (247)
T ss_pred             CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHh---hCCHH
Confidence            788899999999999999998864  45899999999998877754     234455555599999999986   332  


Q ss_pred             HHHHHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCC
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGV  221 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV  221 (277)
                      ++.++++.+   ..+|+.|=+-+   +++...+. .+.. ++.||.-- ...| +--++....+.++.|+ .-...-+|+
T Consensus       139 ~l~~l~~~a---~~lGle~LVEVh~~~El~~a~~-~ga~-iiGINnRd-L~t~-~vd~~~~~~L~~~ip~~~~~IsESGI  211 (247)
T PRK13957        139 QIKSFLKHA---SSLGMDVLVEVHTEDEAKLALD-CGAE-IIGINTRD-LDTF-QIHQNLVEEVAAFLPPNIVKVGESGI  211 (247)
T ss_pred             HHHHHHHHH---HHcCCceEEEECCHHHHHHHHh-CCCC-EEEEeCCC-Cccc-eECHHHHHHHHhhCCCCcEEEEcCCC
Confidence            333344332   34444443322   23333333 2222 24455421 1111 1113445566666764 333345777


Q ss_pred             Cc-CcHHHHHHccCCC---CCcccc-cCHHHHHHH
Q psy11600        222 GP-NTIDECAKCLTGF---GGQKFM-QDMMPKVKW  251 (277)
Q Consensus       222 ~~-~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~  251 (277)
                      .- +.+..+..+ .+.   |...+. ++..+.+++
T Consensus       212 ~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~  245 (247)
T PRK13957        212 ESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLS  245 (247)
T ss_pred             CCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHH
Confidence            52 333444443 442   555554 345555544

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=92.06  E-value=2  Score=38.36  Aligned_cols=120  Identities=17%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCC-----CCC----------HHHHHHHHhcCCCCeeeee
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL-----TFG----------HPVVKCLRNKIPKAFFETH   70 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~-----~~g----------~~~v~~l~~~~~~~~~d~H   70 (277)
                      ..+..+|...|...+.+..+.+++. .+.  +|+-=|  +|+-     ..|          .++++.+|+  .++|+.+=
T Consensus        73 ~p~~vqi~g~~~~~~~~aa~~~~~~-~~~--ielN~g--CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~--~~~pVsvK  145 (233)
T cd02911          73 VLVGVNVRSSSLEPLLNAAALVAKN-AAI--LEINAH--CRQPEMVEAGAGEALLKDPERLSEFIKALKE--TGVPVSVK  145 (233)
T ss_pred             CeEEEEecCCCHHHHHHHHHHHhhc-CCE--EEEECC--CCcHHHhcCCcchHHcCCHHHHHHHHHHHHh--cCCCEEEE
Confidence            3578899999999888888888763 454  444222  2221     222          356777776  36777665


Q ss_pred             eec---cCcHHhHHHHHhcCCCeEEEeccCCCCC----HHHHHHHHhhCCCcc----cc--hhhhhHHHHhcCCCeEEee
Q psy11600         71 MMV---QNPQQWIEPMADANVDQYTFHVEPVDNV----PQVIRQIKEAGMKVG----QV--LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        71 lmv---~~p~~~i~~l~~ag~d~i~~H~e~~d~g----~~~i~~i~~~~~~~~----d~--p~~~i~~~~~~g~d~it~H  137 (277)
                      +=.   .+..+..+.+.++|+|++  |.+.+..+    ...|++++  ...|+    ++  +++..+.+. +|||.|.+-
T Consensus       146 ir~g~~~~~~~la~~l~~aG~d~i--hv~~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiG  220 (233)
T cd02911         146 IRAGVDVDDEELARLIEKAGADII--HVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVA  220 (233)
T ss_pred             EcCCcCcCHHHHHHHHHHhCCCEE--EECcCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEc
Confidence            543   245566788999999988  66554432    45555554  33333    22  555555554 788887774

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=91.98  E-value=7.5  Score=35.38  Aligned_cols=89  Identities=25%  Similarity=0.357  Sum_probs=53.6

Q ss_pred             cccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC----------CHHHHHHHH
Q psy11600         40 MDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN----------VPQVIRQIK  109 (277)
Q Consensus        40 mDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~----------g~~~i~~i~  109 (277)
                      -||.+.||..|+.+...++-                     +.+.++|+++|-+=+=....          ..+.+++++
T Consensus         7 RDG~q~~~~~f~~~~~~~ia---------------------~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~   65 (266)
T cd07944           7 RDGGYVNNWDFGDEFVKAIY---------------------RALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLL   65 (266)
T ss_pred             ccCccccCccCCHHHHHHHH---------------------HHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHH
Confidence            47889999999887666554                     35777788877332111110          146666666


Q ss_pred             hhCC--Ccccc-------hhhhhHHHHhcCCCe--EEeecCCCCChHHHHHHHH
Q psy11600        110 EAGM--KVGQV-------LQDWIEPMADANVDQ--YTFHVEPVDNVPQVIRQIK  152 (277)
Q Consensus       110 ~~~~--~~~d~-------p~~~i~~~~~~g~d~--it~H~E~~~~~~~~~~~I~  152 (277)
                      +...  ..+-+       ..+.++...++|++.  ++++.+   ......+.++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~~---~~~~~~~~i~  116 (266)
T cd07944          66 GDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHKH---EFDEALPLIK  116 (266)
T ss_pred             hhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEecccc---cHHHHHHHHH
Confidence            5431  12211       246788888999997  666665   5555444444

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=91.97  E-value=5.6  Score=36.84  Aligned_cols=72  Identities=14%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCeeeeeeecc------------CcHHhH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQ------------NPQQWI   80 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~------------~p~~~i   80 (277)
                      .+...+.++++...+.|+..+|+  .+|.. |...+  =.++++.+|+..+++  .++-++.            ...+.+
T Consensus        36 ls~eeI~~~~~~~~~~G~~~i~l--~gg~~-~~~~~~~~~~i~~~Ik~~~~~i--~~~~~s~~e~~~~~~~~g~~~~e~l  110 (309)
T TIGR00423        36 LSLEEILEKVKEAVAKGATEVCI--QGGLN-PQLDIEYYEELFRAIKQEFPDV--HIHAFSPMEVYFLAKNEGLSIEEVL  110 (309)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE--ecCCC-CCCCHHHHHHHHHHHHHHCCCc--eEEecCHHHHHHHHHHcCCCHHHHH
Confidence            56667777888888889999776  45532 33222  356788888765443  3332221            146779


Q ss_pred             HHHHhcCCCeE
Q psy11600         81 EPMADANVDQY   91 (277)
Q Consensus        81 ~~l~~ag~d~i   91 (277)
                      +.+.++|++.+
T Consensus       111 ~~LkeAGl~~i  121 (309)
T TIGR00423       111 KRLKKAGLDSM  121 (309)
T ss_pred             HHHHHcCCCcC
Confidence            99999999988

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.93  E-value=0.99  Score=41.63  Aligned_cols=26  Identities=38%  Similarity=0.612  Sum_probs=23.7

Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +++.+++-||||++|++++.+.|+|+
T Consensus       230 ~~~~leaSGGI~~~ni~~yA~tGvD~  255 (278)
T PRK08385        230 ERVKIEVSGGITPENIEEYAKLDVDV  255 (278)
T ss_pred             CCEEEEEECCCCHHHHHHHHHcCCCE
Confidence            45678999999999999999999997

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=91.92  E-value=2.2  Score=38.32  Aligned_cols=120  Identities=10%  Similarity=0.064  Sum_probs=77.7

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccC-----------CCCCH----HHHHHHHhcCCCCeeeeee
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-----------LTFGH----PVVKCLRNKIPKAFFETHM   71 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-----------~~~g~----~~v~~l~~~~~~~~~d~Hl   71 (277)
                      .++.|+-..|...+.+..+.+.+ ++|+  +||-=  -+|+           +.-.|    ++++.+|+  .++|+.+=+
T Consensus        69 ~vivnv~~~~~ee~~~~a~~v~~-~~d~--IdiN~--gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKi  141 (231)
T TIGR00736        69 LVSVNVRFVDLEEAYDVLLTIAE-HADI--IEINA--HCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKI  141 (231)
T ss_pred             CEEEEEecCCHHHHHHHHHHHhc-CCCE--EEEEC--CCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEe
Confidence            46778888888888888888766 5666  45421  2333           22233    45666664  367777766


Q ss_pred             eccC----cHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCC-Ccc----cc--hhhhhHHHHhcCCCeEE
Q psy11600         72 MVQN----PQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGM-KVG----QV--LQDWIEPMADANVDQYT  135 (277)
Q Consensus        72 mv~~----p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~-~~~----d~--p~~~i~~~~~~g~d~it  135 (277)
                      =...    ..+..+.+.++|+|++|+|  .+..     ..+.|+++++... .|+    ++  +++..+.+. +|||.|.
T Consensus       142 R~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~Vm  218 (231)
T TIGR00736       142 RGNCIPLDELIDALNLVDDGFDGIHVD--AMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVS  218 (231)
T ss_pred             CCCCCcchHHHHHHHHHHcCCCEEEEe--eCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEE
Confidence            5532    2356788899999999777  3432     2677888888763 554    22  677777665 8999887


Q ss_pred             e
Q psy11600        136 F  136 (277)
Q Consensus       136 ~  136 (277)
                      +
T Consensus       219 v  219 (231)
T TIGR00736       219 V  219 (231)
T ss_pred             E
Confidence            6

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=91.84  E-value=5.6  Score=39.39  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHcCCCEEEEecccc-ccccCCCC----CHHHHHHHHhcCCCCeeeeeeeccCc-------HH----hHHHH
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDG-TFVPNLTF----GHPVVKCLRNKIPKAFFETHMMVQNP-------QQ----WIEPM   83 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~----g~~~v~~l~~~~~~~~~d~Hlmv~~p-------~~----~i~~l   83 (277)
                      .-+-++.|.+.|++.  +.+.=| +|--+.+|    -.+.++.+++..++.++-+.+-..|.       .+    .++..
T Consensus        27 kl~Ia~~Ld~~Gv~~--IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A  104 (467)
T PRK14041         27 MLPALEAFDRMGFYS--MEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKV  104 (467)
T ss_pred             HHHHHHHHHHcCCCE--EEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHH
Confidence            334455677778888  666321 12111222    24778889887788888776666543       22    26777


Q ss_pred             HhcCCCeEEE
Q psy11600         84 ADANVDQYTF   93 (277)
Q Consensus        84 ~~ag~d~i~~   93 (277)
                      .++|+|++.+
T Consensus       105 ~~~Gvd~iri  114 (467)
T PRK14041        105 AEYGLDIIRI  114 (467)
T ss_pred             HHCCcCEEEE
Confidence            8889998843

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.72  E-value=0.24  Score=45.83  Aligned_cols=74  Identities=23%  Similarity=0.369  Sum_probs=48.3

Q ss_pred             hhhhHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHH-HHhhCCCCeEEEeCCCCccCH
Q psy11600        199 MMPKVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTI  272 (277)
Q Consensus       199 ~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~-l~~~~~~~~I~VDGGI~~~~~  272 (277)
                      +.+.++.+++..+ ...+.|    ...|.+++   .++|||+ .=..|.++.++++-+ +++..++..+++=||||.+|+
T Consensus       182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni  257 (288)
T PRK07428        182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETI  257 (288)
T ss_pred             HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHH
Confidence            3455666776655 344443    34565554   6678886 334666666666443 444467888999999999999


Q ss_pred             HHhh
Q psy11600        273 DECA  276 (277)
Q Consensus       273 ~~~~  276 (277)
                      .+++
T Consensus       258 ~~ya  261 (288)
T PRK07428        258 RAVA  261 (288)
T ss_pred             HHHH
Confidence            8876

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=91.69  E-value=5.1  Score=35.02  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=67.1

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-cC--
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-EP--   97 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~--   97 (277)
                      .++++.+.+.|+|.+=+|.-... .|.-..-.++++.+|+. +++++-+-  +. ..+++..+.++|+|++.++. ..  
T Consensus        78 ~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~-~~i~vi~~--v~-t~ee~~~a~~~G~d~i~~~~~g~t~  152 (221)
T PRK01130         78 LKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEY-PGQLLMAD--CS-TLEEGLAAQKLGFDFIGTTLSGYTE  152 (221)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhC-CCCeEEEe--CC-CHHHHHHHHHcCCCEEEcCCceeec
Confidence            46789999999998777653321 22112334778888874 56665442  22 34457788999999996531 11  


Q ss_pred             -----CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600         98 -----VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 -----~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~  136 (277)
                           .......++++++....|+-.     -.+-+..+.++|||.+.+
T Consensus       153 ~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~i  201 (221)
T PRK01130        153 ETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVV  201 (221)
T ss_pred             CCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence                 111467788888876554432     123344455677777666

>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Probab=91.64  E-value=3.2  Score=43.62  Aligned_cols=84  Identities=12%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCC-----CCCHHHHHHHHhcCCCCeeeeeeeccCcH-HhHHHHHhcC-CCeEE
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNL-----TFGHPVVKCLRNKIPKAFFETHMMVQNPQ-QWIEPMADAN-VDQYT   92 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~-----~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~-~~i~~l~~ag-~d~i~   92 (277)
                      +.++++.|.+.|++|+.+|  +=.++-++     ....+..+.+.+..++.++.+|..-.+.. +.++.+.+.. +|.+ 
T Consensus       188 y~~~l~~L~~~Gv~~IQiD--EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l-  264 (766)
T PLN02475        188 YKEVIAELKAAGASWIQFD--EPALVMDLESHKLQAFKTAYAELESTLSGLNVLVETYFADVPAEAYKTLTSLKGVTAF-  264 (766)
T ss_pred             HHHHHHHHHHCCCCEEEEe--CchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEEEccCCCCCHHHHHHHHcCCCCCEE-
Confidence            5578899999999998887  32222111     11224455554444567889999999988 4788888888 9999 


Q ss_pred             EeccCCCCCHHHHHHH
Q psy11600         93 FHVEPVDNVPQVIRQI  108 (277)
Q Consensus        93 ~H~e~~d~g~~~i~~i  108 (277)
                       |+|...+ ++-++.+
T Consensus       265 -~lD~v~~-~~~L~~l  278 (766)
T PLN02475        265 -GFDLVRG-TKTLDLI  278 (766)
T ss_pred             -EEEecCC-hhhHHHH
Confidence             8876653 3334444

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=91.64  E-value=9.2  Score=34.71  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=29.9

Q ss_pred             CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        237 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       237 ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ||+.-..+-++.+++|.++.....|.+=||||.+|+.++.
T Consensus       149 Gg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~  188 (248)
T PRK11572        149 GQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFL  188 (248)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH
Confidence            4444345667788888776656669999999999998874

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=91.64  E-value=2.2  Score=40.13  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             HHHHHHHHcC--CCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC-
Q psy11600         22 SESQNLLDSG--ADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-   98 (277)
Q Consensus        22 ~~~~~l~~~~--~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~-   98 (277)
                      +.+..|.+.|  +|++=+|.-.|+-.    .-.+.++++|+.+|...+-+- .|. ..+..+.+.++|+|.+.++.-.. 
T Consensus        97 ~r~~~lv~a~~~~d~i~~D~ahg~s~----~~~~~i~~i~~~~p~~~vi~G-nV~-t~e~a~~l~~aGad~I~V~~G~G~  170 (321)
T TIGR01306        97 EFVTQLAEEALTPEYITIDIAHGHSN----SVINMIKHIKTHLPDSFVIAG-NVG-TPEAVRELENAGADATKVGIGPGK  170 (321)
T ss_pred             HHHHHHHhcCCCCCEEEEeCccCchH----HHHHHHHHHHHhCCCCEEEEe-cCC-CHHHHHHHHHcCcCEEEECCCCCc
Confidence            5566677778  69999999998764    445789999998776544443 122 55567889999999997773211 


Q ss_pred             ---------CC--CHH--HHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         99 ---------DN--VPQ--VIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        99 ---------d~--g~~--~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                               .+  +++  .|..+++....++-.      ..+.++.++ +|||.+-+
T Consensus       171 ~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa-~GAd~Vmi  226 (321)
T TIGR01306       171 VCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGASMVMI  226 (321)
T ss_pred             cccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHH-cCCCEEee
Confidence                     11  223  455555544433322      566666666 58887765

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=91.48  E-value=1.1  Score=42.10  Aligned_cols=116  Identities=11%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             HHHHHHHHHcCCCEEEEeccccc----c----------------ccCCCCCHHHHHHHHhcCC-CCeeeeeeecc-----
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGT----F----------------VPNLTFGHPVVKCLRNKIP-KAFFETHMMVQ-----   74 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~----f----------------vp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~-----   74 (277)
                      .+..+++.++|.|.+-+-.--|-    |                -....|..++++.+|+.+. +.++-+-+-..     
T Consensus       157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~  236 (336)
T cd02932         157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG  236 (336)
T ss_pred             HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC
Confidence            34556678889999544432221    1                1112233689999998763 66666554321     


Q ss_pred             --CcH---HhHHHHHhcCCCeEEEeccC------CCC----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCe
Q psy11600         75 --NPQ---QWIEPMADANVDQYTFHVEP------VDN----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQ  133 (277)
Q Consensus        75 --~p~---~~i~~l~~ag~d~i~~H~e~------~d~----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~  133 (277)
                        +++   +.++.+.+.|+|++++|.-.      ...    .....+++|+..+.|+-.      |++..+.+.+-.+|.
T Consensus       237 g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~  316 (336)
T cd02932         237 GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADL  316 (336)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence              233   34667788899999876311      111    235677788877665533      555444444434777


Q ss_pred             EEe
Q psy11600        134 YTF  136 (277)
Q Consensus       134 it~  136 (277)
                      |.+
T Consensus       317 V~~  319 (336)
T cd02932         317 VAL  319 (336)
T ss_pred             ehh
Confidence            665

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=91.48  E-value=5  Score=40.45  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             eeeccCcHHhHHHHHhcCCCeEEEeccCCC---C------CHHHHHHHHhhCCCcccc------h----------hhhhH
Q psy11600         70 HMMVQNPQQWIEPMADANVDQYTFHVEPVD---N------VPQVIRQIKEAGMKVGQV------L----------QDWIE  124 (277)
Q Consensus        70 Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d---~------g~~~i~~i~~~~~~~~d~------p----------~~~i~  124 (277)
                      +-.+.||.+..+.+.+.|||++|| +|...   +      -.++|+.+.+....|+.+      .          .+.++
T Consensus       263 ~~~~gdPve~a~~y~~~Gadel~~-~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~  341 (538)
T PLN02617        263 VRNLGKPVELAGQYYKDGADEVAF-LNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVAS  341 (538)
T ss_pred             CCcCCCHHHHHHHHHHcCCCEEEE-EECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHH
Confidence            345678999999999999999943 23321   1      156788888877777766      1          25689


Q ss_pred             HHHhcCCCeEEeecC
Q psy11600        125 PMADANVDQYTFHVE  139 (277)
Q Consensus       125 ~~~~~g~d~it~H~E  139 (277)
                      .+.++|||.|++-..
T Consensus       342 ~~l~~GadkV~i~s~  356 (538)
T PLN02617        342 EYFRSGADKISIGSD  356 (538)
T ss_pred             HHHHcCCCEEEEChH
Confidence            999999999999764

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=91.46  E-value=1  Score=40.34  Aligned_cols=83  Identities=18%  Similarity=0.155  Sum_probs=54.8

Q ss_pred             CCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH
Q psy11600          3 HVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP   82 (277)
Q Consensus         3 ~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~   82 (277)
                      |+.++|.|-.   +..+.-+-.+.+++.|+|++|+|.|...- |.  -..+.|+++++..+++|+-.-==|.++++..+.
T Consensus       136 PVsvKiR~~~---~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~  209 (231)
T TIGR00736       136 PIFVKIRGNC---IPLDELIDALNLVDDGFDGIHVDAMYPGK-PY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEM  209 (231)
T ss_pred             cEEEEeCCCC---CcchHHHHHHHHHHcCCCEEEEeeCCCCC-ch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHH
Confidence            3455666654   23344566677899999999998665211 11  236889999986445776554445567777776


Q ss_pred             HHhcCCCeEE
Q psy11600         83 MADANVDQYT   92 (277)
Q Consensus        83 l~~ag~d~i~   92 (277)
                      +. +|||.+.
T Consensus       210 l~-~GAd~Vm  218 (231)
T TIGR00736       210 LK-AGADFVS  218 (231)
T ss_pred             HH-hCCCeEE
Confidence            65 8999883

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=91.44  E-value=4.7  Score=35.38  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=77.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+.+++.|++.+|+==.||.+-.. .-..+.++++++. +++|+.+-=-+.+.++ ++.+.++|++.+.+=....
T Consensus        31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~-~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed-~~~~~~~Ga~~vilg~~~l  107 (233)
T PRK00748         31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGK-PVNLELIEAIVKA-VDIPVQVGGGIRSLET-VEALLDAGVSRVIIGTAAV  107 (233)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCccccCC-cccHHHHHHHHHH-CCCCEEEcCCcCCHHH-HHHHHHcCCCEEEECchHH
Confidence            55667777888999999985557766421 2346789999886 6777777666666654 5677778999884333222


Q ss_pred             CCCHHHHHHHHhhCC----Ccccc-----------------hhhhhHHHHhcCCCeEEeec
Q psy11600         99 DNVPQVIRQIKEAGM----KVGQV-----------------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        99 d~g~~~i~~i~~~~~----~~~d~-----------------p~~~i~~~~~~g~d~it~H~  138 (277)
                      + .+..++.+.+...    ..+|+                 |.++++.+.++|++.+.+|-
T Consensus       108 ~-~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~  167 (233)
T PRK00748        108 K-NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTD  167 (233)
T ss_pred             h-CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEee
Confidence            2 4666666655421    12221                 56788889999999999984

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=91.43  E-value=2.9  Score=36.99  Aligned_cols=100  Identities=15%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV  101 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g  101 (277)
                      ++++...++|+++        -..|+  +.+++++.-+++  ++++-...+  +|.+.. ...++|+|++-+.. +...|
T Consensus        79 ~~~~~a~~aGA~F--------ivsP~--~~~~v~~~~~~~--~i~~iPG~~--T~~E~~-~A~~~Gad~vklFP-a~~~G  142 (213)
T PRK06552         79 VTARLAILAGAQF--------IVSPS--FNRETAKICNLY--QIPYLPGCM--TVTEIV-TALEAGSEIVKLFP-GSTLG  142 (213)
T ss_pred             HHHHHHHHcCCCE--------EECCC--CCHHHHHHHHHc--CCCEECCcC--CHHHHH-HHHHcCCCEEEECC-cccCC
Confidence            5677888889998        45676  888999988864  666666544  666554 45679999997732 23458


Q ss_pred             HHHHHHHHhhCC-Ccccc----hhhhhHHHHhcCCCeEEee
Q psy11600        102 PQVIRQIKEAGM-KVGQV----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       102 ~~~i~~i~~~~~-~~~d~----p~~~i~~~~~~g~d~it~H  137 (277)
                      +..+++++.... .++-.    ..+-+..+.++|++.+.+-
T Consensus       143 ~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavg  183 (213)
T PRK06552        143 PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIG  183 (213)
T ss_pred             HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEc
Confidence            999999988654 34322    5677788888888887763

>PRK15108 biotin synthase; Provisional

Probab=91.36  E-value=4.4  Score=38.37  Aligned_cols=78  Identities=8%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEecccc--ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDG--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      +...+.+..+...+.|+..+++ ..-|  .....+.+=.++++.+|+.  .+.+.+++-... .+.++.|.++|+|.+++
T Consensus        77 s~eEI~~~a~~~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~--~i~v~~s~G~ls-~e~l~~LkeAGld~~n~  152 (345)
T PRK15108         77 EVEQVLESARKAKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAM--GLETCMTLGTLS-ESQAQRLANAGLDYYNH  152 (345)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhC--CCEEEEeCCcCC-HHHHHHHHHcCCCEEee
Confidence            3344555566666789999765 2221  1121223334667777753  455555555444 77899999999999976


Q ss_pred             eccC
Q psy11600         94 HVEP   97 (277)
Q Consensus        94 H~e~   97 (277)
                      -+|+
T Consensus       153 ~leT  156 (345)
T PRK15108        153 NLDT  156 (345)
T ss_pred             cccc
Confidence            6776

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=91.33  E-value=3  Score=39.12  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC-
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-   98 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~-   98 (277)
                      ..+.++.+.+.|++.+++|.-.|+-    ..-.+.++++|+.+|++++-++ -+ .-.+..+.+.++|+|.|.++.-.. 
T Consensus        95 ~~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p~v~Vi~G-~v-~t~~~A~~l~~aGaD~I~vg~g~G~  168 (325)
T cd00381          95 DKERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYPNVDVIAG-NV-VTAEAARDLIDAGADGVKVGIGPGS  168 (325)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCCCceEEEC-CC-CCHHHHHHHHhcCCCEEEECCCCCc
Confidence            4567777888999999998865422    1235679999987665444331 11 233457788899999998763211 


Q ss_pred             --------CCCH---HHHHHHHhhC---CCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         99 --------DNVP---QVIRQIKEAG---MKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        99 --------d~g~---~~i~~i~~~~---~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                              ..+.   ..+..+++..   ..|+-.      +.+..+.++ +||+.+-+
T Consensus       169 ~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla-~GA~~Vmi  225 (325)
T cd00381         169 ICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA-AGADAVML  225 (325)
T ss_pred             CcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-cCCCEEEe
Confidence                    0111   2233333322   233322      666666665 89888776

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=91.26  E-value=1.6  Score=40.94  Aligned_cols=116  Identities=12%  Similarity=0.139  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccc------c-cc---------------CCCCCHHHHHHHHhcCC-CCeeeeeeec--
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGT------F-VP---------------NLTFGHPVVKCLRNKIP-KAFFETHMMV--   73 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~------f-vp---------------~~~~g~~~v~~l~~~~~-~~~~d~Hlmv--   73 (277)
                      ++.+..++++++|.|.  |+|-=|+      | .|               ...|..++|+++|+... ++++-+.+-.  
T Consensus       150 ~~~~aA~ra~~aGfDg--Veih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~  227 (338)
T cd04733         150 RFAHAARLAQEAGFDG--VQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSAD  227 (338)
T ss_pred             HHHHHHHHHHHcCCCE--EEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHH
Confidence            3445667788899999  5553332      1 22               23344689999998864 5666665531  


Q ss_pred             -----cCcH---HhHHHHHhcCCCeEEEeccC---CC----------C----CHHHHHHHHhhCCCcccc------hhhh
Q psy11600         74 -----QNPQ---QWIEPMADANVDQYTFHVEP---VD----------N----VPQVIRQIKEAGMKVGQV------LQDW  122 (277)
Q Consensus        74 -----~~p~---~~i~~l~~ag~d~i~~H~e~---~d----------~----g~~~i~~i~~~~~~~~d~------p~~~  122 (277)
                           .+++   +.++.+.++|+|++++|.-.   ..          .    -....+.+|+.+..|+-.      |++.
T Consensus       228 ~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a  307 (338)
T cd04733         228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAM  307 (338)
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence                 1333   34778889999999876321   00          0    025567788877665533      5555


Q ss_pred             hHHHHhcCCCeEEe
Q psy11600        123 IEPMADANVDQYTF  136 (277)
Q Consensus       123 i~~~~~~g~d~it~  136 (277)
                      .+.+.+-++|.|.+
T Consensus       308 ~~~l~~g~aD~V~l  321 (338)
T cd04733         308 EQALASGAVDGIGL  321 (338)
T ss_pred             HHHHHcCCCCeeee
Confidence            55555555777776

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.23  E-value=2.1  Score=41.52  Aligned_cols=109  Identities=16%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV--   98 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~--   98 (277)
                      .+.++.|.++|+|.+=+|.-+|+-.    .-.+.++++|+.+|+.++-+. -+..++ ....+.++|+|.|-+-+...  
T Consensus       155 ~~~v~~lv~aGvDvI~iD~a~g~~~----~~~~~v~~ik~~~p~~~vi~g-~V~T~e-~a~~l~~aGaD~I~vG~g~Gs~  228 (404)
T PRK06843        155 IERVEELVKAHVDILVIDSAHGHST----RIIELVKKIKTKYPNLDLIAG-NIVTKE-AALDLISVGADCLKVGIGPGSI  228 (404)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCh----hHHHHHHHHHhhCCCCcEEEE-ecCCHH-HHHHHHHcCCCEEEECCCCCcC
Confidence            3678888889999999999997621    234779999998888653221 123333 45667889999986544321  


Q ss_pred             ------CC-CHH---HHHHHHhh---CCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         99 ------DN-VPQ---VIRQIKEA---GMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        99 ------d~-g~~---~i~~i~~~---~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                            ++ |..   .+..+++.   ...|+-+      |.+.++.|+ +||+.+-+
T Consensus       229 c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa-lGA~aVmv  284 (404)
T PRK06843        229 CTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA-AGADSVMI  284 (404)
T ss_pred             CcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence                  12 222   23223332   2333322      777777776 88886655

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=91.22  E-value=12  Score=34.24  Aligned_cols=70  Identities=10%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             HHHHHHHHHcCCCEEEEe-ccccccccCCCCCHHHHHH-------HHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         21 HSESQNLLDSGADYLHLD-VMDGTFVPNLTFGHPVVKC-------LRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~D-imDg~fvp~~~~g~~~v~~-------l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      .++.+.|++.|+|.+=+- -.|.+|.+  ..+|+++.+       +|+. ..+|+=+.++-.++..-+.....+|+++|-
T Consensus        31 ~~ea~~l~~~GvD~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~~~-~~~p~GvnvL~nd~~aal~iA~a~ga~FIR  107 (257)
T TIGR00259        31 WKDAMALEEGGVDAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLKSD-VSIPLGINVLRNDAVAALAIAMAVGAKFIR  107 (257)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHHHh-cCCCeeeeeecCCCHHHHHHHHHhCCCEEE
Confidence            367788999999996653 23577765  477776655       4443 456888888888899888888889999885


Q ss_pred             E
Q psy11600         93 F   93 (277)
Q Consensus        93 ~   93 (277)
                      +
T Consensus       108 v  108 (257)
T TIGR00259       108 V  108 (257)
T ss_pred             E
Confidence            4

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=91.18  E-value=6.2  Score=40.34  Aligned_cols=148  Identities=15%  Similarity=0.159  Sum_probs=89.1

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC--C-CHHH-HHHHHhhCC----Ccc----cc-hhhhhHHHHhcCCCeEEeecCCCCCh
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD--N-VPQV-IRQIKEAGM----KVG----QV-LQDWIEPMADANVDQYTFHVEPVDNV  144 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d--~-g~~~-i~~i~~~~~----~~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~  144 (277)
                      +.++.+.++|+|++-|-+....  . .++. .+.|.+.-.    ..+    +. ++...+...+.+.|.+=+|-+   ..
T Consensus        14 eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~---e~   90 (610)
T PRK13803         14 ALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA---ES   90 (610)
T ss_pred             HHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CC
Confidence            4567788999999988654321  1 4555 555544321    111    11 677778788999999999976   33


Q ss_pred             ---HHHHHHHHHhCCcc--ceeeCCCCCHHhHHHHHhhcCceEEEEecC--CCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600        145 ---PQVIRQIKEAGMKV--GLAIKPKTPVDVIAEYIESADLVLIMTVEP--GFGGQKFMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       145 ---~~~~~~I~~~g~~~--g~~i~p~t~~~~i~~~i~~~d~vl~mav~P--gt~gq~~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                         ....+.+++.+.+.  -+.+.....++.+.+|...+|.+++=+-.|  |.+|+.|.-+.+.      .+.....+.+
T Consensus        91 ~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~------~~~~~~p~iL  164 (610)
T PRK13803         91 KAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFY------NYNFKFPFFL  164 (610)
T ss_pred             cccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhh------hcccCCcEEE
Confidence               44555555433222  233333333455556655578777665444  3446666644332      2222345789


Q ss_pred             eCCCCcCcHHHHHH-ccC
Q psy11600        218 DGGVGPNTIDECAK-CLT  234 (277)
Q Consensus       218 dGgV~~~tv~~~~~-~gp  234 (277)
                      .||++.+|+.++.+ ..|
T Consensus       165 AGGL~peNV~~ai~~~~p  182 (610)
T PRK13803        165 SGGLSPTNFDRIINLTHP  182 (610)
T ss_pred             EeCCCHHHHHHHHhhhCC
Confidence            99999999999775 455

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=91.17  E-value=7.7  Score=34.99  Aligned_cols=167  Identities=12%  Similarity=0.112  Sum_probs=94.9

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc-h-hhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV-L-QDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~-p-~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      ||-+......++|||.||+|.-.--.  -.+-+..+++....++  .+ | +++++...+..++.+|+=+|   ...++ 
T Consensus        25 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE---~r~E~-  100 (239)
T PRK05265         25 DPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPE---KREEL-  100 (239)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCC---CCCCc-
Confidence            67777888899999999999764211  4566888888765544  33 4 77889999999999999888   32211 


Q ss_pred             HHHHHhCCccceeeCCCCCHH---hHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600        149 RQIKEAGMKVGLAIKPKTPVD---VIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT  225 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~~~---~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t  225 (277)
                              .-.-|+......+   .+...++..++..-+-++|..          +.|+..++.... -+++      -|
T Consensus       101 --------TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~----------~qi~~A~~~GAd-~VEL------hT  155 (239)
T PRK05265        101 --------TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDP----------EQIEAAAEVGAD-RIEL------HT  155 (239)
T ss_pred             --------cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCH----------HHHHHHHHhCcC-EEEE------ec
Confidence                    0122222222222   334445677777777778752          235544443221 1121      12


Q ss_pred             HHHHHHccCCCCCcccccCHHHHHHHHHhh--CCCCeEEEeCCCCccCHHHhh
Q psy11600        226 IDECAKCLTGFGGQKFMQDMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       226 v~~~~~~gpg~ggq~F~~~~~~kI~~l~~~--~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      =..+ .  . ++.+.  ..-+++++..-+.  ...+.+-.=.|.|.+|+..+.
T Consensus       156 G~yA-~--a-~~~~~--~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~  202 (239)
T PRK05265        156 GPYA-D--A-KTEAE--AAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIA  202 (239)
T ss_pred             hhhh-c--C-CCcch--HHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHh
Confidence            1100 0  0 11111  2224455443332  235677777889988877653

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=91.14  E-value=3  Score=39.37  Aligned_cols=209  Identities=13%  Similarity=0.159  Sum_probs=117.3

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEE------------------EeccccccccCCCC---CH-HHHHHHHhcCCCCee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLH------------------LDVMDGTFVPNLTF---GH-PVVKCLRNKIPKAFF   67 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h------------------~DimDg~fvp~~~~---g~-~~v~~l~~~~~~~~~   67 (277)
                      |=++++=+..-.+.++.+.+.|...+=                  -..-|..+.+.+.|   |. .+++++++...+.++
T Consensus        58 Pi~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i  137 (335)
T TIGR01036        58 PLGLAAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPI  137 (335)
T ss_pred             CcEeCCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcE
Confidence            334444455555677777776665421                  11112345555555   33 346666654345666


Q ss_pred             eeeeecc-------CcHHhHHHHHhcC--CCeEEEeccCCC--C---------CHHHHHHHHhhCC-------Ccccc--
Q psy11600         68 ETHMMVQ-------NPQQWIEPMADAN--VDQYTFHVEPVD--N---------VPQVIRQIKEAGM-------KVGQV--  118 (277)
Q Consensus        68 d~Hlmv~-------~p~~~i~~l~~ag--~d~i~~H~e~~d--~---------g~~~i~~i~~~~~-------~~~d~--  118 (277)
                      -+-+...       .+++|.+.+..++  +|++.+-+-+-.  +         -.++++++|+.+.       .|+-+  
T Consensus       138 ~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL  217 (335)
T TIGR01036       138 GINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKI  217 (335)
T ss_pred             EEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEe
Confidence            6665433       3678888887777  999977543211  1         3456777776654       55533  


Q ss_pred             -h-------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600        119 -L-------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF  190 (277)
Q Consensus       119 -p-------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt  190 (277)
                       |       ...++.+.++|+|-|+.---    +.+. ..+          ..+...                 .-.-|.
T Consensus       218 sP~~~~~~i~~ia~~~~~~GadGi~l~NT----~~~~-~~~----------~~~~~~-----------------~~~GGl  265 (335)
T TIGR01036       218 APDLTESDLEDIADSLVELGIDGVIATNT----TVSR-SLV----------QGPKNS-----------------DETGGL  265 (335)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcEEEEECC----CCcc-ccc----------cCcccc-----------------CCCCcc
Confidence             2       33456667788888887431    1110 000          000000                 001256


Q ss_pred             CCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCcccc--cCHHHHHH
Q psy11600        191 GGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM--QDMMPKVK  250 (277)
Q Consensus       191 ~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~--~~~~~kI~  250 (277)
                      +|....+-.+..+.++++..+ ++.+.-.|||.- +.+.+.+.+|++.   |+..+.  +...++|.
T Consensus       266 SG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~  332 (335)
T TIGR01036       266 SGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV  332 (335)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence            776777777888888877654 688988999853 3345566788885   555444  55555554

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=91.04  E-value=2.5  Score=41.89  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      +..+-++.|.+.|+|.+=+|+-+|+=.    .-.+.++++|+.||++++-+.- +. -.+....+.++|+|.+-
T Consensus       225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~----~~~~~i~~i~~~~~~~~vi~g~-~~-t~~~~~~l~~~G~d~i~  292 (475)
T TIGR01303       225 DVGGKAKALLDAGVDVLVIDTAHGHQV----KMISAIKAVRALDLGVPIVAGN-VV-SAEGVRDLLEAGANIIK  292 (475)
T ss_pred             cHHHHHHHHHHhCCCEEEEeCCCCCcH----HHHHHHHHHHHHCCCCeEEEec-cC-CHHHHHHHHHhCCCEEE
Confidence            455777888889999999999998653    3457899999988887766630 11 22346778899999984

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=91.00  E-value=0.66  Score=45.53  Aligned_cols=65  Identities=17%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      +..+.|.++|+|.+++|...|+-.    .-.+.++++|+.||++++-+ =-+.++ +..+.+.++|+|.+-
T Consensus       227 ~r~~~L~~aG~d~I~vd~a~g~~~----~~~~~i~~i~~~~~~~~vi~-G~v~t~-~~a~~l~~aGad~i~  291 (450)
T TIGR01302       227 ERAEALVKAGVDVIVIDSSHGHSI----YVIDSIKEIKKTYPDLDIIA-GNVATA-EQAKALIDAGADGLR  291 (450)
T ss_pred             HHHHHHHHhCCCEEEEECCCCcHh----HHHHHHHHHHHhCCCCCEEE-EeCCCH-HHHHHHHHhCCCEEE
Confidence            566677788999999999998542    45678999999888776655 122233 356678889999984

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=91.00  E-value=0.46  Score=43.76  Aligned_cols=78  Identities=14%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             hhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC-CCcccccC-HHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        199 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF-GGQKFMQD-MMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       199 ~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~-~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +-+.++.+++..+...++|.-. +++-+.+..++|++. ---.|-++ ..+-++.+++..++..+++-||||++|++.++
T Consensus       175 i~~av~~~r~~~~~~kIeVEv~-tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya  253 (277)
T TIGR01334       175 WGGAIGRLKQTAPERKITVEAD-TIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYI  253 (277)
T ss_pred             HHHHHHHHHHhCCCCCEEEECC-CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHH
Confidence            3445667777766555665321 344444456677774 11234433 33333444445678889999999999998875


Q ss_pred             C
Q psy11600        277 K  277 (277)
Q Consensus       277 ~  277 (277)
                      +
T Consensus       254 ~  254 (277)
T TIGR01334       254 E  254 (277)
T ss_pred             h
Confidence            3

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=90.97  E-value=4.5  Score=35.65  Aligned_cols=167  Identities=14%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             cCcHHhHHHHHhcCCCeEEEe------ccCCC-CCHHHHHHHHhhCCCcc-----cchhhhhHHHHhcCCCeEEeecCCC
Q psy11600         74 QNPQQWIEPMADANVDQYTFH------VEPVD-NVPQVIRQIKEAGMKVG-----QVLQDWIEPMADANVDQYTFHVEPV  141 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H------~e~~d-~g~~~i~~i~~~~~~~~-----d~p~~~i~~~~~~g~d~it~H~E~~  141 (277)
                      .++.+.++.+.+.|++.+.++      .+..- ++...+..++..+....     .....-++..+++||+.+.+..-..
T Consensus        21 ~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~  100 (235)
T cd00958          21 EDPEETVKLAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVG  100 (235)
T ss_pred             cCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecC
Confidence            477888888888888888777      22111 11111111111122111     1133447888999999886665210


Q ss_pred             C-ChHHHH-------HHHHHhCCccceeeCCCC---------CHHhHHHH---Hh--hcCceEEEEecCCCCCchhhhhh
Q psy11600        142 D-NVPQVI-------RQIKEAGMKVGLAIKPKT---------PVDVIAEY---IE--SADLVLIMTVEPGFGGQKFMQDM  199 (277)
Q Consensus       142 ~-~~~~~~-------~~I~~~g~~~g~~i~p~t---------~~~~i~~~---i~--~~d~vl~mav~Pgt~gq~~~~~~  199 (277)
                      . ......       +..++.|++.  -++...         +-+.+...   ..  .+|++-.   ++ +.+       
T Consensus       101 ~~~~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~---~~-~~~-------  167 (235)
T cd00958         101 SEEEREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT---KY-TGD-------  167 (235)
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEe---cC-CCC-------
Confidence            0 111122       2222334332  222111         11333331   11  2455432   22 222       


Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCcCc-------HHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~~t-------v~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      ++.++++.+.. .+.+.+.||++..|       ++.++++|++.   |+..|. ++..+.++++++
T Consensus       168 ~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~  232 (235)
T cd00958         168 AESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISA  232 (235)
T ss_pred             HHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHH
Confidence            23344444433 24467779987644       78889999884   777776 567777777775

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=90.93  E-value=8.1  Score=34.78  Aligned_cols=82  Identities=11%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC---CCeeeeeee----ccCc-----------
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP---KAFFETHMM----VQNP-----------   76 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~---~~~~d~Hlm----v~~p-----------   76 (277)
                      ++ .+|.+.++.+.+.|.|.+.+++-.....++...++..++++|+...   .+.+.+|.-    ..+|           
T Consensus         8 ~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~   86 (279)
T cd00019           8 AG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIER   86 (279)
T ss_pred             cc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHH
Confidence            44 7899999999999999988876443333333345667777765432   346666631    1122           


Q ss_pred             -HHhHHHHHhcCCCeEEEeccC
Q psy11600         77 -QQWIEPMADANVDQYTFHVEP   97 (277)
Q Consensus        77 -~~~i~~l~~ag~d~i~~H~e~   97 (277)
                       .+.++...+.|++++.+|.-.
T Consensus        87 ~~~~i~~A~~lG~~~v~~~~g~  108 (279)
T cd00019          87 LKDEIERCEELGIRLLVFHPGS  108 (279)
T ss_pred             HHHHHHHHHHcCCCEEEECCCC
Confidence             223555556688877777543

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Probab=90.86  E-value=6.7  Score=41.25  Aligned_cols=77  Identities=21%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccc-cccCCC-----CCHHHHHHHHhcC----CCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGT-FVPNLT-----FGHPVVKCLRNKI----PKAFFETHMMVQNPQQWIEPMADANV   88 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~-fvp~~~-----~g~~~v~~l~~~~----~~~~~d~Hlmv~~p~~~i~~l~~ag~   88 (277)
                      -+.+|++.|+++|++++.+|==.-. ..|.-.     +=...+++++...    ++..+..|+--.|..+.++.+.+..+
T Consensus       587 alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~I~~~i~~l~~  666 (766)
T PLN02475        587 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDA  666 (766)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHhCCC
Confidence            4668899999999999999843211 111000     1122333334321    24446777777788888888888888


Q ss_pred             CeEEEeccC
Q psy11600         89 DQYTFHVEP   97 (277)
Q Consensus        89 d~i~~H~e~   97 (277)
                      |.++  +|.
T Consensus       667 D~~~--~E~  673 (766)
T PLN02475        667 DVIT--IEN  673 (766)
T ss_pred             CEEE--EEc
Confidence            8885  454

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=90.77  E-value=1.6  Score=40.44  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      .+++.+++.||||.+|+.++.+.|+++
T Consensus       241 ~~~i~leAsGGIt~~ni~~ya~tGvD~  267 (288)
T PRK07428        241 NPRVKIEASGNITLETIRAVAETGVDY  267 (288)
T ss_pred             CCCeEEEEECCCCHHHHHHHHHcCCCE
Confidence            455678899999999999999999997

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=90.76  E-value=13  Score=35.48  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             HHHHHHHHcCCCEEEEeccccccc-----cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFV-----PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fv-----p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      +-++.|.+.|++.  +++  |.|+     |++.--.+.++.+++. ++..+-+.  +. -.+.++...++|++++++=
T Consensus        72 ~ia~~L~~~GV~~--IEv--Gs~vspk~vPqmad~~ev~~~i~~~-~~~~~~~l--~~-n~~die~A~~~g~~~v~i~  141 (347)
T PLN02746         72 ELIQRLVSSGLPV--VEA--TSFVSPKWVPQLADAKDVMAAVRNL-EGARFPVL--TP-NLKGFEAAIAAGAKEVAVF  141 (347)
T ss_pred             HHHHHHHHcCCCE--EEE--CCCcCcccccccccHHHHHHHHHhc-cCCceeEE--cC-CHHHHHHHHHcCcCEEEEE
Confidence            3455677778766  333  5554     4433233567888763 44433322  22 3456888999999998433

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=90.65  E-value=6.7  Score=34.28  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccC--
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEP--   97 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~--   97 (277)
                      .++++.+.+.|+|.+=+|.-+.. .|+-..-.++++.+++.. ++++.+-  +.+++ ++....++|+|++.+ +...  
T Consensus        82 ~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g-~~~iiv~--v~t~~-ea~~a~~~G~d~i~~~~~g~t~  156 (219)
T cd04729          82 IEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY-NCLLMAD--ISTLE-EALNAAKLGFDIIGTTLSGYTE  156 (219)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh-CCeEEEE--CCCHH-HHHHHHHcCCCEEEccCccccc
Confidence            35889999999999888765532 243223347888888864 5665543  33454 467788899999954 2211  


Q ss_pred             -----CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600         98 -----VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 -----~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~  136 (277)
                           .....+.++++++....|+-.     -.+-+..+.++|||.+.+
T Consensus       157 ~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v  205 (219)
T cd04729         157 ETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV  205 (219)
T ss_pred             cccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence                 011457788888776544432     123444555567776665

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK04326 methionine synthase; Provisional

Probab=90.56  E-value=6.4  Score=36.65  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCH----HHHHHHHhcCC--CCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH----PVVKCLRNKIP--KAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~----~~v~~l~~~~~--~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      .+.++++.|.+.|++++.+|=-      .++..+    ..++.+++...  +..+-+|+--.+.....+.+.+.++|.++
T Consensus       162 ~~~~~i~~l~~~G~~~iqidEP------~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~vd~i~  235 (330)
T PRK04326        162 VINEEIKNLVEAGAKYIQIDEP------ALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPVDQFD  235 (330)
T ss_pred             HHHHHHHHHHHCCCCEEEecCc------hhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCCCEEE
Confidence            3567888899999999888742      222222    22333333222  33455666656766667788888999884


Q ss_pred             Ee
Q psy11600         93 FH   94 (277)
Q Consensus        93 ~H   94 (277)
                      +.
T Consensus       236 ~d  237 (330)
T PRK04326        236 LE  237 (330)
T ss_pred             EE
Confidence            33

>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase

Probab=90.54  E-value=2.6  Score=44.19  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccC-----CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPN-----LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~-----~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      +.++++.|.+.|++|+.+|  +=.++-+     +..-.+..+.+.+..++.++.+|..-.+..+.++.+.+.++|.+  |
T Consensus       180 y~~~l~~L~~~G~~~IQiD--EP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg~~~~~~~~l~~lpvd~l--~  255 (750)
T TIGR01371       180 YKEVLKKLAEAGATWVQID--EPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFDSVGDALEALVSLPVKGI--G  255 (750)
T ss_pred             HHHHHHHHHHCCCCEEEee--CchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCCchHHHHHHHHcCCCCEE--E
Confidence            4578999999999998887  3122211     11112344445443346778899999998888999999999999  7


Q ss_pred             ccCCC
Q psy11600         95 VEPVD   99 (277)
Q Consensus        95 ~e~~d   99 (277)
                      +|...
T Consensus       256 lD~v~  260 (750)
T TIGR01371       256 LDFVH  260 (750)
T ss_pred             EEecc
Confidence            77654

This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=90.45  E-value=0.45  Score=43.83  Aligned_cols=76  Identities=22%  Similarity=0.280  Sum_probs=47.2

Q ss_pred             hhhhHHHHHhhCCCc--cEEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHHH-HHhhC--CCCeEEEeCCCCccCH
Q psy11600        199 MMPKVKWLRENYPTL--NIEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVKW-LRENY--PTLNIEVDGGVGPNTI  272 (277)
Q Consensus       199 ~l~kI~~l~~~~~~~--~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~~-l~~~~--~~~~I~VDGGI~~~~~  272 (277)
                      +.+.++.++...+..  .++++   +++-+.+..++|++. =--.|.++.++++.+ +++.+  ++..+++-||||.+|+
T Consensus       169 i~~av~~~r~~~~~~kIeVEv~---~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni  245 (278)
T PRK08385        169 LEEAIRRAKEFSVYKVVEVEVE---SLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENI  245 (278)
T ss_pred             HHHHHHHHHHhCCCCcEEEEeC---CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHH
Confidence            445567777766544  44443   344444456677773 113344555555555 44443  6788999999999999


Q ss_pred             HHhhC
Q psy11600        273 DECAK  277 (277)
Q Consensus       273 ~~~~~  277 (277)
                      +++++
T Consensus       246 ~~yA~  250 (278)
T PRK08385        246 EEYAK  250 (278)
T ss_pred             HHHHH
Confidence            98763

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=90.42  E-value=4.4  Score=38.09  Aligned_cols=130  Identities=19%  Similarity=0.136  Sum_probs=91.7

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEecccc---ccccCCCCC----------HHHHHHHHhcCCCCeeeeeeecc
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG---TFVPNLTFG----------HPVVKCLRNKIPKAFFETHMMVQ   74 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg---~fvp~~~~g----------~~~v~~l~~~~~~~~~d~Hlmv~   74 (277)
                      ++.-|...|+..+.+..+.+++.|+|.  +|+-=|   ..|-+-++|          -+.|+++++..+++|+.|=+=+.
T Consensus        69 ~~vQl~gsdp~~l~eaA~~~~~~g~~~--IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG  146 (323)
T COG0042          69 VAVQLGGSDPELLAEAAKIAEELGADI--IDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG  146 (323)
T ss_pred             EEEEecCCCHHHHHHHHHHHHhcCCCE--EeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc
Confidence            566788899999999999999988666  665332   222233343          35677788763358888876665


Q ss_pred             C------cHHhHHHHHhcCCCeEEEeccCC-CC-----CHHHHHHHHhhCC-Cccc----c--hhhhhHHHHhcCCCeEE
Q psy11600         75 N------PQQWIEPMADANVDQYTFHVEPV-DN-----VPQVIRQIKEAGM-KVGQ----V--LQDWIEPMADANVDQYT  135 (277)
Q Consensus        75 ~------p~~~i~~l~~ag~d~i~~H~e~~-d~-----g~~~i~~i~~~~~-~~~d----~--p~~~i~~~~~~g~d~it  135 (277)
                      -      ..+..+.+.++|++.+|+|.... .+     -.+.|+++|+... .|+-    +  +++..+.+...|+|-|-
T Consensus       147 ~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVM  226 (323)
T COG0042         147 WDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVM  226 (323)
T ss_pred             cCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEE
Confidence            4      22467788899999999997752 11     5678889988877 5553    2  78888888888999888


Q ss_pred             eecC
Q psy11600        136 FHVE  139 (277)
Q Consensus       136 ~H~E  139 (277)
                      +-=.
T Consensus       227 igRg  230 (323)
T COG0042         227 IGRG  230 (323)
T ss_pred             EcHH
Confidence            7543

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=90.36  E-value=11  Score=33.16  Aligned_cols=40  Identities=25%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHHhh
Q psy11600        237 GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       237 ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ||..-..+-++.+++|.++ ...++|.+=||||.+|++.+.
T Consensus       148 Gg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~  188 (201)
T PF03932_consen  148 GGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELV  188 (201)
T ss_dssp             TTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHH
Confidence            4443334557778877654 356899999999999998875

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=90.32  E-value=4.8  Score=37.87  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             HHHHhcCCCCeeeeeeeccCc-----HHhHHHHHhcCCCeEEEeccCCC-----C---CH----HHHHHHHhhCCCcccc
Q psy11600         56 KCLRNKIPKAFFETHMMVQNP-----QQWIEPMADANVDQYTFHVEPVD-----N---VP----QVIRQIKEAGMKVGQV  118 (277)
Q Consensus        56 ~~l~~~~~~~~~d~Hlmv~~p-----~~~i~~l~~ag~d~i~~H~e~~d-----~---g~----~~i~~i~~~~~~~~d~  118 (277)
                      +.+|+..|+.|+-+-+.+.++     .+..+.....++|.+-+|+....     .   ..    +.|+++++..+.|+-+
T Consensus       105 ~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPViv  184 (333)
T TIGR02151       105 EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIV  184 (333)
T ss_pred             HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence            666775589999887765333     33444445557888888975321     1   22    5688888876666543


Q ss_pred             -------hhhhhHHHHhcCCCeEEeec
Q psy11600        119 -------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus       119 -------p~~~i~~~~~~g~d~it~H~  138 (277)
                             ..+.++.+.++|+|.|++|-
T Consensus       185 K~~g~g~~~~~a~~L~~aGvd~I~Vsg  211 (333)
T TIGR02151       185 KEVGFGISKEVAKLLADAGVSAIDVAG  211 (333)
T ss_pred             EecCCCCCHHHHHHHHHcCCCEEEECC
Confidence                   45677889999999999975

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=90.29  E-value=9.4  Score=34.09  Aligned_cols=115  Identities=13%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+.+++.|++++|+==.|+..  .-.-..++++++.+. .++|+.+.==+.+++ .++.+.++|++.+.+=....
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~-~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~l  108 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGK-LDVKVELSGGIRDDE-SLEAALATGCARVNIGTAAL  108 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHH-cCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchHh
Confidence            44456667778999999962234432  222234789999875 566666655555554 57778889999885443333


Q ss_pred             CCCHHHHHHHHhhC-CC---cccc----------------hhhhhHHHHhcCCCeEEeec
Q psy11600         99 DNVPQVIRQIKEAG-MK---VGQV----------------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        99 d~g~~~i~~i~~~~-~~---~~d~----------------p~~~i~~~~~~g~d~it~H~  138 (277)
                      . .|++++++.+.. ..   .+|+                +.++++.+.++|++.+++|-
T Consensus       109 ~-~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~  167 (241)
T PRK14024        109 E-NPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTD  167 (241)
T ss_pred             C-CHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEe
Confidence            2 466666665432 11   1121                57888999999999999994

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=90.26  E-value=6.6  Score=35.25  Aligned_cols=40  Identities=25%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CCcccccCHHHHHHHHHhhC-CCCeEEEeCCCCccCHHHhh
Q psy11600        237 GGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       237 ggq~F~~~~~~kI~~l~~~~-~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ||..--.+.++++++|.++. ..+.|.+=|||+++|+..+.
T Consensus       149 Gg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~  189 (241)
T COG3142         149 GGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELV  189 (241)
T ss_pred             CCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHH
Confidence            44433346677777777654 56889999999999998774

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=90.23  E-value=3.2  Score=36.98  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=75.8

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      ++.-.+.++|..+...-.+..+..|+++  +||-         =.|+.|+..|.. +++|+=|.  .-+|+.+.. ..++
T Consensus        16 KVIsGLnNFd~~~V~~i~~AA~~ggAt~--vDIA---------adp~LV~~~~~~-s~lPICVS--aVep~~f~~-aV~A   80 (242)
T PF04481_consen   16 KVISGLNNFDAESVAAIVKAAEIGGATF--VDIA---------ADPELVKLAKSL-SNLPICVS--AVEPELFVA-AVKA   80 (242)
T ss_pred             hheeCccccCHHHHHHHHHHHHccCCce--EEec---------CCHHHHHHHHHh-CCCCeEee--cCCHHHHHH-HHHh
Confidence            5667788999999999999999999998  7764         467889988874 99998764  447887775 5678


Q ss_pred             CCCeEEEe-ccCC--CC---CHHHHHHHHhhCC-----C------cccch----hhhhHHHHhcCCCeE
Q psy11600         87 NVDQYTFH-VEPV--DN---VPQVIRQIKEAGM-----K------VGQVL----QDWIEPMADANVDQY  134 (277)
Q Consensus        87 g~d~i~~H-~e~~--d~---g~~~i~~i~~~~~-----~------~~d~p----~~~i~~~~~~g~d~i  134 (277)
                      |+|.+-+= ||+.  .|   ..+-|-.+-+.|+     .      ||-.|    .+...++.++|+|+|
T Consensus        81 GAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiI  149 (242)
T PF04481_consen   81 GADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADII  149 (242)
T ss_pred             CCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEE
Confidence            99988322 2221  11   3333333333321     1      22223    446688899999985

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=90.13  E-value=1.9  Score=39.74  Aligned_cols=74  Identities=14%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCCC
Q psy11600         14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANVD   89 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~d   89 (277)
                      ..|+..+.+.++.+.+.|++.  +=+-|  |...|.-.  .+.++.+|+.+|+.++.+|.--..-......  ..++|++
T Consensus       143 r~~~~~~~~~~~~~~~~G~~~--i~l~DT~G~~~P~~v--~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~  218 (280)
T cd07945         143 RDSPDYVFQLVDFLSDLPIKR--IMLPDTLGILSPFET--YTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK  218 (280)
T ss_pred             cCCHHHHHHHHHHHHHcCCCE--EEecCCCCCCCHHHH--HHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence            357788889999999999998  77788  66777632  3678889888888999999877654443333  3567999


Q ss_pred             eE
Q psy11600         90 QY   91 (277)
Q Consensus        90 ~i   91 (277)
                      ++
T Consensus       219 ~v  220 (280)
T cd07945         219 GL  220 (280)
T ss_pred             EE
Confidence            88

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=90.05  E-value=1.3  Score=42.31  Aligned_cols=83  Identities=17%  Similarity=0.248  Sum_probs=52.9

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH--hHHHH
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ--WIEPM   83 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~--~i~~l   83 (277)
                      ..+++++-.-|  +-.+-.+.|.++|+|.+-+|+..|+-.    +-.+.++++|+.||++++    ++.|-..  ..+.|
T Consensus        97 l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~----~~~~~ik~ik~~~~~~~v----iaGNV~T~e~a~~L  166 (352)
T PF00478_consen   97 LLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSE----HVIDMIKKIKKKFPDVPV----IAGNVVTYEGAKDL  166 (352)
T ss_dssp             BCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSH----HHHHHHHHHHHHSTTSEE----EEEEE-SHHHHHHH
T ss_pred             ceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHH----HHHHHHHHHHHhCCCceE----EecccCCHHHHHHH
Confidence            34555555433  224566677788999999999998764    223679999999886655    4455332  36678


Q ss_pred             HhcCCCeEEEeccCCCC
Q psy11600         84 ADANVDQYTFHVEPVDN  100 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~  100 (277)
                      .++|+|.+  -+-+..|
T Consensus       167 ~~aGad~v--kVGiGpG  181 (352)
T PF00478_consen  167 IDAGADAV--KVGIGPG  181 (352)
T ss_dssp             HHTT-SEE--EESSSSS
T ss_pred             HHcCCCEE--EEeccCC
Confidence            89999999  4444333

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR01496 DHPS dihydropteroate synthase

Probab=89.97  E-value=14  Score=33.57  Aligned_cols=98  Identities=20%  Similarity=0.304  Sum_probs=55.9

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCCC-CCH--------HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT-FGH--------PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-~g~--------~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +.....+..+...+.|+++  +||-=-..-|+.. ..+        +.|+.+++. .++|+.+|-  .+|+. ++...++
T Consensus        21 ~~~~~~~~a~~~~~~GA~i--IDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~-~~~plsiDT--~~~~v-i~~al~~   94 (257)
T TIGR01496        21 SVDKAVAHAERMLEEGADI--IDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ-PDVPISVDT--YRAEV-ARAALEA   94 (257)
T ss_pred             CHHHHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEEeC--CCHHH-HHHHHHc
Confidence            3334445566667889999  8882101112211 111        345666653 467776663  34543 5555667


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      |+++|- |+....                   ..+.++.++++|+.+|.+|.+
T Consensus        95 G~~iIN-sis~~~-------------------~~~~~~l~~~~~~~vV~m~~~  127 (257)
T TIGR01496        95 GADIIN-DVSGGQ-------------------DPAMLEVAAEYGVPLVLMHMR  127 (257)
T ss_pred             CCCEEE-ECCCCC-------------------CchhHHHHHHcCCcEEEEeCC
Confidence            999872 432221                   124556778889999999864

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=89.87  E-value=1.5  Score=40.19  Aligned_cols=79  Identities=16%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC--Ccccc----hhhhhH
Q psy11600         52 HPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM--KVGQV----LQDWIE  124 (277)
Q Consensus        52 ~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~--~~~d~----p~~~i~  124 (277)
                      ...++.+|+..+ +.+  +-+-+.++++ +....++|+|++  -+|.+  .++.++++.+...  .|+.+    -.+-++
T Consensus       169 ~~~v~~~r~~~~~~~~--Igvev~s~ee-a~~A~~~gaDyI--~ld~~--~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~  241 (268)
T cd01572         169 TEAVRRARAAAPFTLK--IEVEVETLEQ-LKEALEAGADII--MLDNM--SPEELREAVALLKGRVLLEASGGITLENIR  241 (268)
T ss_pred             HHHHHHHHHhCCCCCe--EEEEECCHHH-HHHHHHcCCCEE--EECCc--CHHHHHHHHHHcCCCCcEEEECCCCHHHHH
Confidence            456888888766 333  4455557754 555678999999  56655  4778888776553  45554    578889


Q ss_pred             HHHhcCCCeEEee
Q psy11600        125 PMADANVDQYTFH  137 (277)
Q Consensus       125 ~~~~~g~d~it~H  137 (277)
                      +++++|+|.|++=
T Consensus       242 ~~a~~Gvd~Iav~  254 (268)
T cd01572         242 AYAETGVDYISVG  254 (268)
T ss_pred             HHHHcCCCEEEEE
Confidence            9999999998874

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional

Probab=89.68  E-value=7  Score=37.36  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMD   41 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimD   41 (277)
                      -+.+|++.|.++|++++.+|==.
T Consensus       171 al~~Ei~~L~~aG~~~IQiDep~  193 (368)
T PRK06520        171 TWRDAIKAFYDAGCRYLQLDDTV  193 (368)
T ss_pred             HHHHHHHHHHHCCCCEEEecCcc
Confidence            36688999999999999998443

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=89.65  E-value=12  Score=33.69  Aligned_cols=103  Identities=15%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      ||-+......++|||.||+|.-.--.  -.+-+..+|+....++  ++  -+++++...+..++.+|+=+|   ....+ 
T Consensus        22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPE---kr~E~-   97 (234)
T cd00003          22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPE---KREEL-   97 (234)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCC---CCCCc-
Confidence            67778888999999999999763211  4456777877765444  33  477888899999999999888   32211 


Q ss_pred             HHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCC
Q psy11600        149 RQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPG  189 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pg  189 (277)
                              .-.-|+......   ..+...++..++.+-+.++|.
T Consensus        98 --------TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd  133 (234)
T cd00003          98 --------TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD  133 (234)
T ss_pred             --------cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence                    012222222222   334445677788888888886

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]

Probab=89.61  E-value=4  Score=36.69  Aligned_cols=94  Identities=18%  Similarity=0.246  Sum_probs=62.3

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEE-eccc-cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHL-DVMD-GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVD   89 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~-DimD-g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d   89 (277)
                      .+..+-..|.+....+++.|...+=+ -=|| .-+||=-.| -+.+++++.+ +.+.+.+|.=..+ +++++++.++++|
T Consensus        36 Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~-~~l~inaHvGfvd-E~~~eklk~~~vd  112 (275)
T COG1856          36 MIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKER-TGLLINAHVGFVD-ESDLEKLKEELVD  112 (275)
T ss_pred             hcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHH-HHHHHHHHHh-hCeEEEEEeeecc-HHHHHHHHHhcCc
Confidence            34445556667777777777665322 1233 224553333 2578889886 8999999999999 9999999999999


Q ss_pred             eEEEeccCCCCCHHHHHHHHhh
Q psy11600         90 QYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        90 ~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      .+...+--   -.++|+++-+.
T Consensus       113 vvsLDfvg---Dn~vIk~vy~l  131 (275)
T COG1856         113 VVSLDFVG---DNDVIKRVYKL  131 (275)
T ss_pred             EEEEeecC---ChHHHHHHHcC
Confidence            99655432   23566665443

>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional

Probab=89.61  E-value=5.9  Score=41.57  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCC-----CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLT-----FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-----~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      +.++++.|.+.|++|+.+|  |-.++-...     .-.+..+.+.+..++..+.+|....+.....+.+.+.++|.+  |
T Consensus       186 y~~~l~~L~~aG~~~IQiD--EP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~l~~l~Vd~l--~  261 (758)
T PRK05222        186 YAELLAELAAAGAEWVQID--EPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFGSLNDALDLLASLPVDGL--H  261 (758)
T ss_pred             HHHHHHHHHHCCCCEEEee--CchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeeccchhhHHHHHHcCCCCEE--E
Confidence            4578899999999998887  433321111     011223333331124567788887887666888889999999  5


Q ss_pred             ccCCC
Q psy11600         95 VEPVD   99 (277)
Q Consensus        95 ~e~~d   99 (277)
                      +|..+
T Consensus       262 LD~~~  266 (758)
T PRK05222        262 LDLVR  266 (758)
T ss_pred             EEeeC
Confidence            55443

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=89.61  E-value=7.4  Score=33.76  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=78.0

Q ss_pred             hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee--CCCCC-----HHhHHHHHhh-cCceEEEEecCCC
Q psy11600        119 LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI--KPKTP-----VDVIAEYIES-ADLVLIMTVEPGF  190 (277)
Q Consensus       119 p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i--~p~t~-----~~~i~~~i~~-~d~vl~mav~Pgt  190 (277)
                      +.++++...+.|++.+++|..   ......+.++..+.+....+  ..|.+     +..+++.++. +|-+- +.+|.|.
T Consensus        19 i~~~~~~a~~~~~~av~v~p~---~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevd-vv~~~g~   94 (203)
T cd00959          19 IRKLCDEAKEYGFAAVCVNPC---FVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEID-MVINIGA   94 (203)
T ss_pred             HHHHHHHHHHcCCCEEEEcHH---HHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEE-EeecHHH
Confidence            456777888889999999765   44433333332222222221  12211     1234444442 44333 4456663


Q ss_pred             CCchhhhhhhhhHHHHHhhCCC--ccEEEeCC-CCcCc----HHHHHHccCCC----CCcccccCHHHHHHHHHhhC-CC
Q psy11600        191 GGQKFMQDMMPKVKWLRENYPT--LNIEVDGG-VGPNT----IDECAKCLTGF----GGQKFMQDMMPKVKWLRENY-PT  258 (277)
Q Consensus       191 ~gq~~~~~~l~kI~~l~~~~~~--~~i~vdGg-V~~~t----v~~~~~~gpg~----ggq~F~~~~~~kI~~l~~~~-~~  258 (277)
                      --.....++++.+.++++...+  +.+.+.-+ .+.+.    .+.+.++|++|    -|.......++.++.+++.. .+
T Consensus        95 ~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~  174 (203)
T cd00959          95 LKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR  174 (203)
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC
Confidence            1112335566667777665433  22222222 22111    34467899998    23333456788888887754 46


Q ss_pred             CeEEEeCCCC
Q psy11600        259 LNIEVDGGVG  268 (277)
Q Consensus       259 ~~I~VDGGI~  268 (277)
                      ..|-+-||+.
T Consensus       175 v~ik~aGGik  184 (203)
T cd00959         175 VGVKAAGGIR  184 (203)
T ss_pred             ceEEEeCCCC
Confidence            7899999999

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.59  E-value=1  Score=41.77  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=44.3

Q ss_pred             hhhhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHH
Q psy11600        199 MMPKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       199 ~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~  273 (277)
                      ..+.++++++..+...++|    .++|.+++   .++|++. ==-.|.++.+++.- .+++..++..+++-||||++|++
T Consensus       186 i~~ai~~~r~~~~~~kIeV----Ev~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~  261 (289)
T PRK07896        186 VVAALRAVRAAAPDLPCEV----EVDSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAA  261 (289)
T ss_pred             HHHHHHHHHHhCCCCCEEE----EcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHH
Confidence            4456777777666554554    35666665   4455553 11233333222222 22334678899999999999998


Q ss_pred             HhhC
Q psy11600        274 ECAK  277 (277)
Q Consensus       274 ~~~~  277 (277)
                      .+++
T Consensus       262 ~yA~  265 (289)
T PRK07896        262 AYAE  265 (289)
T ss_pred             HHHh
Confidence            8763

>cd00945 Aldolase_Class_I Class I aldolases

Probab=89.48  E-value=11  Score=31.38  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeeccC-------cHHhHHHHHhc
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMVQN-------PQQWIEPMADA   86 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv~~-------p~~~i~~l~~a   86 (277)
                      |...+++.++.+.+.|++.        -++.     ..+++.+++..+  +.++.++.-..+       ..+.++.+.++
T Consensus        11 d~~~~~~~~~~~~~~gv~g--------i~~~-----g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~   77 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAA--------VCVN-----PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL   77 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcE--------EEEC-----HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence            6778888999998888876        2331     277887777655  488888887765       33467788889


Q ss_pred             CCCeEEEe
Q psy11600         87 NVDQYTFH   94 (277)
Q Consensus        87 g~d~i~~H   94 (277)
                      |+|.+.++
T Consensus        78 Gad~i~v~   85 (201)
T cd00945          78 GADEIDVV   85 (201)
T ss_pred             CCCEEEEe
Confidence            99998665

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=89.38  E-value=20  Score=36.51  Aligned_cols=72  Identities=17%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc-------ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-------cH----HhH
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG-------TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-------PQ----QWI   80 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg-------~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-------p~----~~i   80 (277)
                      +.-+-++.|.+.|++.  +++--|       .|+..-  -.+.++.+++..|+.++-..+-..|       |.    ..+
T Consensus        22 dkl~ia~~L~~~Gv~~--IE~~GGatfd~~~~f~~e~--~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v   97 (582)
T TIGR01108        22 DMLPIAEKLDDVGYWS--LEVWGGATFDACIRFLNED--PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV   97 (582)
T ss_pred             HHHHHHHHHHHcCCCE--EEecCCcccccccccCCCC--HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence            3334556677778887  666422       333221  2367899988778888876654443       22    247


Q ss_pred             HHHHhcCCCeEEEe
Q psy11600         81 EPMADANVDQYTFH   94 (277)
Q Consensus        81 ~~l~~ag~d~i~~H   94 (277)
                      +...++|+|++.+-
T Consensus        98 ~~a~~~Gvd~irif  111 (582)
T TIGR01108        98 KKAVENGMDVFRIF  111 (582)
T ss_pred             HHHHHCCCCEEEEE
Confidence            77788899988544

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK08185 hypothetical protein; Provisional

Probab=89.38  E-value=5.7  Score=36.74  Aligned_cols=128  Identities=13%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--ee---------------e
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--HM---------------M   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--Hl---------------m   72 (277)
                      |=.+..|-..--+.++...+.|.+.+-+|=-+-+|--|+...-++++..++.  ++++.+  ..               +
T Consensus        70 PV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~--gv~vE~ElG~vg~~e~~~~~~~~~~~  147 (283)
T PRK08185         70 PFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKV--GVSVEGELGTIGNTGTSIEGGVSEII  147 (283)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEeeccCccccccccccccc
Confidence            5556677776667777878889999999988888888887777777666652  333222  11               1


Q ss_pred             ccCcHHhHHHHHhcCCCeEEE-----eccCC-----CCCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         73 VQNPQQWIEPMADANVDQYTF-----HVEPV-----DNVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~-----H~e~~-----d~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      ..+|++-.+...+.|+|++.+     |---.     ....+.++.|++.+..|+-+      |++.+...+++|+.-|-+
T Consensus       148 ~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi  227 (283)
T PRK08185        148 YTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINI  227 (283)
T ss_pred             CCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence            336665555555569999999     73311     12688999999987766532      888899999999999999


Q ss_pred             ecC
Q psy11600        137 HVE  139 (277)
Q Consensus       137 H~E  139 (277)
                      ..|
T Consensus       228 ~T~  230 (283)
T PRK08185        228 SSD  230 (283)
T ss_pred             ChH
Confidence            876

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=89.36  E-value=7.1  Score=36.53  Aligned_cols=72  Identities=15%  Similarity=0.378  Sum_probs=45.9

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeeeec---------c---CcHHhH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHMMV---------Q---NPQQWI   80 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hlmv---------~---~p~~~i   80 (277)
                      .+...+.++++.+.+.|+..+|+  ..|.. |+..+.  .++++.+++..+++.  +|-++         .   ...+.+
T Consensus        72 ls~eei~~~~~~~~~~G~~~i~l--~gG~~-p~~~~~~~~~li~~Ik~~~~~i~--~~~~s~~ei~~~~~~~g~~~~e~l  146 (340)
T TIGR03699        72 LSVEEILQKIEELVAYGGTQILL--QGGVN-PDLGLDYYEDLFRAIKARFPHIH--IHSFSPVEIVYIAKKEGLSLREVL  146 (340)
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEE--ecCCC-CCCCHHHHHHHHHHHHHHCCCcC--CCCCCHHHHHHHhccCCCCHHHHH
Confidence            44556667777888899999887  55532 443332  357788887644443  33221         0   125678


Q ss_pred             HHHHhcCCCeE
Q psy11600         81 EPMADANVDQY   91 (277)
Q Consensus        81 ~~l~~ag~d~i   91 (277)
                      +.+.++|++.+
T Consensus       147 ~~Lk~aG~~~~  157 (340)
T TIGR03699       147 ERLKEAGLDSI  157 (340)
T ss_pred             HHHHHcCCCcC
Confidence            99999999988

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=89.36  E-value=5  Score=41.69  Aligned_cols=193  Identities=13%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEP  125 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~  125 (277)
                      .+|.++|+.-|..-.-.  .-.+|.+..+.+.++||+.|++.-|..  .|....++.+|+.+..|+..     -...|.+
T Consensus        51 ~vIaEiKraSPs~G~i~--~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~e  128 (695)
T PRK13802         51 PVIAEIKRASPSKGHLS--DIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWE  128 (695)
T ss_pred             eEEEEeecCCCCCCcCC--CCCCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHH
Confidence            35556666544432222  123788999999999999999998864  56999999999998887754     3556777


Q ss_pred             HHhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhH
Q psy11600        126 MADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKV  203 (277)
Q Consensus       126 ~~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI  203 (277)
                      -..+|||.|.+.+..-.  .+..+++..+.+|+.+=+-+.   .-+++...++. +.. ++.||-- ....| +--++.-
T Consensus       129 a~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh---~~~el~~a~~~-ga~-iiGINnR-dL~tf-~vd~~~t  201 (695)
T PRK13802        129 ARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETH---TREEIERAIAA-GAK-VIGINAR-NLKDL-KVDVNKY  201 (695)
T ss_pred             HHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhC-CCC-EEEEeCC-CCccc-eeCHHHH
Confidence            78899999998875110  122333444444433211111   11234333432 211 2344531 11112 1124455


Q ss_pred             HHHHhhCCC-ccEEEeCCCC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        204 KWLRENYPT-LNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       204 ~~l~~~~~~-~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      .+|.++.|. +-++.-.||. ...+..+.++|++.   |...+. ++.-+++++|..
T Consensus       202 ~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~  258 (695)
T PRK13802        202 NELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVK  258 (695)
T ss_pred             HHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence            666777765 3333447775 35577788888774   666555 578888888864

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional

Probab=89.29  E-value=17  Score=33.23  Aligned_cols=181  Identities=12%  Similarity=0.079  Sum_probs=100.1

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCH----HHHHHHHhhCCCcc-cc---hhhhhH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVP----QVIRQIKEAGMKVG-QV---LQDWIE  124 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~----~~i~~i~~~~~~~~-d~---p~~~i~  124 (277)
                      .+-+.|++-  ...+-.++...+| ...+.+..+|-|++.+..|-...+.    ..+.+++.....++ -+   -..++.
T Consensus         8 ~lk~~L~~G--~~~~G~~~~~~sp-~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~   84 (267)
T PRK10128          8 PFKEGLRKG--EVQIGLWLSSTTS-YMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIK   84 (267)
T ss_pred             HHHHHHHcC--CceEEEEecCCCc-HHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHH
Confidence            455566653  4556677777777 4678889999999998888655533    34444444433332 33   245789


Q ss_pred             HHHhcCCCeE-EeecCCCCChHHHHHHHHHhCCc----cceeeC--CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhh
Q psy11600        125 PMADANVDQY-TFHVEPVDNVPQVIRQIKEAGMK----VGLAIK--PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQ  197 (277)
Q Consensus       125 ~~~~~g~d~i-t~H~E~~~~~~~~~~~I~~~g~~----~g~~i~--p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~  197 (277)
                      ...++||+-| .-|+|   +.++..+.++...+.    +|.+-.  +........+|...++--++..+.-.|+      
T Consensus        85 r~LD~GA~GIivP~V~---saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~------  155 (267)
T PRK10128         85 QVLDIGAQTLLIPMVD---TAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESK------  155 (267)
T ss_pred             HHhCCCCCeeEecCcC---CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCH------
Confidence            9999999954 55777   777777777665332    333321  1111112346666554333333333442      


Q ss_pred             hhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHH
Q psy11600        198 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLR  253 (277)
Q Consensus       198 ~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~  253 (277)
                      +.++.++++.+. +.++...-|.-.+     ....  |.-++...|+..+.++++.
T Consensus       156 ~a~~n~~~I~~~-~gvd~i~~G~~Dl-----s~sl--g~~~~~~~pev~~ai~~v~  203 (267)
T PRK10128        156 TALDNLDEILDV-EGIDGVFIGPADL-----SASL--GYPDNAGHPEVQRIIETSI  203 (267)
T ss_pred             HHHHhHHHHhCC-CCCCEEEECHHHH-----HHHc--CCCCCCCCHHHHHHHHHHH
Confidence            345566666653 6676665433321     1122  2335555565555555443

>PRK00957 methionine synthase; Provisional

Probab=89.26  E-value=8.5  Score=35.48  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCC---CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLT---FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY   91 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i   91 (277)
                      +.++++.|.+.|++++.+|  |-.+..++.   +-.+.++.+.+. -+..+.+|+- .+.....+.+.+.++|.+
T Consensus       146 ~~~~i~~l~~~G~~~IqiD--EP~l~~~~~~~~~~~~~~~~~~~~-i~~~v~lH~C-G~~~~i~~~l~~~~vd~i  216 (305)
T PRK00957        146 LRKEAEALEKAGVAMIQID--EPILSTGAYDLEVAKKAIDIITKG-LNVPVAMHVC-GDVSNIIDDLLKFNVDIL  216 (305)
T ss_pred             HHHHHHHHHHcCCCEEEec--ChhhhcCCchHHHHHHHHHHHHHh-hCCceEEEEC-CCcHHHHHHHHhCCCCEE
Confidence            4577788899999998887  633332211   111223333222 1334455653 455555666666777777

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=89.25  E-value=0.81  Score=42.32  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=46.7

Q ss_pred             hhhhHHHHHhhCCCccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHHHH-HhhCCCCeEEEeCCCCccCHH
Q psy11600        199 MMPKVKWLRENYPTLNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVKWL-RENYPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       199 ~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~~l-~~~~~~~~I~VDGGI~~~~~~  273 (277)
                      +.+.++.+++..+...++|.    ++|.++   ..++|++. =--.|.++.++++.++ ++..++..+++-||||++|++
T Consensus       176 i~~av~~~r~~~~~~kIeVE----v~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~  251 (284)
T PRK06096        176 WSGAINQLRRHAPEKKIVVE----ADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLK  251 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEE----CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHH
Confidence            34456677776665445542    445555   45677774 1234555544444443 223567889999999999998


Q ss_pred             HhhC
Q psy11600        274 ECAK  277 (277)
Q Consensus       274 ~~~~  277 (277)
                      .+++
T Consensus       252 ~yA~  255 (284)
T PRK06096        252 NYAD  255 (284)
T ss_pred             HHHh
Confidence            8763

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=89.25  E-value=2  Score=40.01  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc-ccc-hhhhhHHHHh
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-GQV-LQDWIEPMAD  128 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~-~d~-p~~~i~~~~~  128 (277)
                      ..++++|+. ++.||-+.+++..|.  +.++.+.+.|++.+.++.-.   ..++++.+|+..... .++ -.++.+...+
T Consensus        52 ~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~---p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~  127 (307)
T TIGR03151        52 KEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN---PGKYIPRLKENGVKVIPVVASVALAKRMEK  127 (307)
T ss_pred             HHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC---cHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            446778864 888999998876544  45787889999999886432   235899999886543 344 3556788889


Q ss_pred             cCCCeEEeec
Q psy11600        129 ANVDQYTFHV  138 (277)
Q Consensus       129 ~g~d~it~H~  138 (277)
                      +|+|.|++|-
T Consensus       128 ~GaD~Ivv~g  137 (307)
T TIGR03151       128 AGADAVIAEG  137 (307)
T ss_pred             cCCCEEEEEC
Confidence            9999999865

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=89.18  E-value=2.1  Score=39.22  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +++.+++-|||+.+|+.++.++|+++
T Consensus       229 ~~i~i~AsGGI~~~ni~~~~~~Gvd~  254 (272)
T cd01573         229 PPVLLAAAGGINIENAAAYAAAGADI  254 (272)
T ss_pred             CCceEEEECCCCHHHHHHHHHcCCcE
Confidence            45678899999999999999999996

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.09  E-value=0.86  Score=41.91  Aligned_cols=76  Identities=22%  Similarity=0.373  Sum_probs=46.9

Q ss_pred             hhhhhHHHHHhhCCC-ccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHHHHH-hhCCCCeEEEeCCCCccC
Q psy11600        198 DMMPKVKWLRENYPT-LNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVKWLR-ENYPTLNIEVDGGVGPNT  271 (277)
Q Consensus       198 ~~l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~~l~-~~~~~~~I~VDGGI~~~~  271 (277)
                      .+.+.++++++..|. ..+.|+    ..|.++   ..++|+|+ .-..|.++.+++.-+.+ ..+++..+++-||||++|
T Consensus       167 ~i~~~v~~~k~~~p~~~~I~VE----v~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~n  242 (273)
T PRK05848        167 DLKEFIQHARKNIPFTAKIEIE----CESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNITLEN  242 (273)
T ss_pred             cHHHHHHHHHHhCCCCceEEEE----eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHH
Confidence            445567778887773 555553    455555   45577774 32444444344333322 234678899999999999


Q ss_pred             HHHhhC
Q psy11600        272 IDECAK  277 (277)
Q Consensus       272 ~~~~~~  277 (277)
                      ++++++
T Consensus       243 i~~ya~  248 (273)
T PRK05848        243 INAYAK  248 (273)
T ss_pred             HHHHHH
Confidence            988763

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=89.08  E-value=1.8  Score=41.00  Aligned_cols=114  Identities=15%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeccc----------------------cccccCCCCCHHHHHHHHhcCC-----CCeeeeeee
Q psy11600         20 LHSESQNLLDSGADYLHLDVMD----------------------GTFVPNLTFGHPVVKCLRNKIP-----KAFFETHMM   72 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimD----------------------g~fvp~~~~g~~~v~~l~~~~~-----~~~~d~Hlm   72 (277)
                      +.+..++++++|.|.  |+|-=                      |.+-....|-.++++.+|+..+     +.++-+.+-
T Consensus       146 f~~aA~~a~~aGfDg--Veih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s  223 (353)
T cd04735         146 FGEATRRAIEAGFDG--VEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS  223 (353)
T ss_pred             HHHHHHHHHHcCCCE--EEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence            345556788899999  44422                      2222333455689999999863     566666554


Q ss_pred             ccC-------cH---HhHHHHHhcCCCeEEEeccCCC--------CCHHHHHHHHhhC--CCcccc------hhhhhHHH
Q psy11600         73 VQN-------PQ---QWIEPMADANVDQYTFHVEPVD--------NVPQVIRQIKEAG--MKVGQV------LQDWIEPM  126 (277)
Q Consensus        73 v~~-------p~---~~i~~l~~ag~d~i~~H~e~~d--------~g~~~i~~i~~~~--~~~~d~------p~~~i~~~  126 (277)
                      ..+       ++   +.++.+.++|+|++++|.-...        .+....+++++..  ..|+-.      |++--+.+
T Consensus       224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l  303 (353)
T cd04735         224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEAL  303 (353)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence            332       22   3467888999999988742110        1345566666654  333322      55533333


Q ss_pred             HhcCCCeEEe
Q psy11600        127 ADANVDQYTF  136 (277)
Q Consensus       127 ~~~g~d~it~  136 (277)
                       +.|+|.|.+
T Consensus       304 -~~gaD~V~~  312 (353)
T cd04735         304 -ETGADLVAI  312 (353)
T ss_pred             -HcCCChHHH
Confidence             337776654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=89.04  E-value=5.8  Score=36.71  Aligned_cols=128  Identities=13%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee---------------eecc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH---------------MMVQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H---------------lmv~   74 (277)
                      |=.+..|-..--+.+.++.+.|.+++-+|--.=+|-.|+...-++++.-++.  ++.+++=               -...
T Consensus        79 PV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~--gv~VEaElG~igg~ed~~~~~~~~yT  156 (285)
T PRK07709         79 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHAR--NVSVEAELGTVGGQEDDVIAEGVIYA  156 (285)
T ss_pred             cEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeccCCccCCcccccccCC
Confidence            5566777775556677777889999999877777777888877777776653  3333321               2246


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++-.+.+.+.|+|.+.+=+-..-|        -.+.++.|++....|+-+      |++.+...+++|+.-|-+..|
T Consensus       157 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~  235 (285)
T PRK07709        157 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTE  235 (285)
T ss_pred             CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChH
Confidence            89888888888999999765543322        677899999987666533      999999999999999999876

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=89.00  E-value=7.1  Score=36.36  Aligned_cols=147  Identities=19%  Similarity=0.174  Sum_probs=83.6

Q ss_pred             HhHHHHHhcCCC-eEEEeccCCC--CCHHHHHHHHhhCCCcccc------h--hhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         78 QWIEPMADANVD-QYTFHVEPVD--NVPQVIRQIKEAGMKVGQV------L--QDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d-~i~~H~e~~d--~g~~~i~~i~~~~~~~~d~------p--~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.+..+.++|.= .+  +...++  .-...|+++|+.+..|+-+      |  .++++.+.+.|++.|+++..   .+..
T Consensus        26 ~la~avs~aGglG~l--~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g---~p~~  100 (307)
T TIGR03151        26 SLAAAVSNAGGLGII--GAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAG---NPGK  100 (307)
T ss_pred             HHHHHHHhCCCccee--ccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCC---CcHH
Confidence            355566666532 33  321111  1224466777766655432      2  46778888999999999876   6767


Q ss_pred             HHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCC-CCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-
Q psy11600        147 VIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPG-FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-  223 (277)
Q Consensus       147 ~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pg-t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-  223 (277)
                      .++.+++.|.+.  -... ++++......+ -+|.+.+-..+.| ..+.   ...+.-+.++++.. ++-+...|||.- 
T Consensus       101 ~i~~lk~~g~~v--~~~v-~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-~iPviaaGGI~~~  173 (307)
T TIGR03151       101 YIPRLKENGVKV--IPVV-ASVALAKRMEKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-SIPVIAAGGIADG  173 (307)
T ss_pred             HHHHHHHcCCEE--EEEc-CCHHHHHHHHHcCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-CCCEEEECCCCCH
Confidence            888888876432  1122 23433333322 3676655444443 2221   12344455555433 467899999975 


Q ss_pred             CcHHHHHHccCCC
Q psy11600        224 NTIDECAKCLTGF  236 (277)
Q Consensus       224 ~tv~~~~~~gpg~  236 (277)
                      ..+..+...|++.
T Consensus       174 ~~~~~al~~GA~g  186 (307)
T TIGR03151       174 RGMAAAFALGAEA  186 (307)
T ss_pred             HHHHHHHHcCCCE
Confidence            3366777788885

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=88.98  E-value=5.4  Score=36.88  Aligned_cols=128  Identities=15%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm   72 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-++.  ++.+++                 .-+
T Consensus        76 PValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~--gvsVEaElG~igg~e~~~~~~~~~~~  153 (284)
T PRK12737         76 PLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRY--DASVEAELGRLGGQEDDLVVDEKDAM  153 (284)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeeccCccCCccccccccc
Confidence            5556677666557777888889999999877777877888877788777753  333322                 123


Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..+|++-.+.+.+.|+|.+.+=+-..-|        -.+.++.|++.+..|+-+      |++.+...+++|+.-|-+..
T Consensus       154 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T  233 (284)
T PRK12737        154 YTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT  233 (284)
T ss_pred             CCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence            5578888887788999999765544333        677899999987666532      99999999999999999977


Q ss_pred             C
Q psy11600        139 E  139 (277)
Q Consensus       139 E  139 (277)
                      |
T Consensus       234 ~  234 (284)
T PRK12737        234 E  234 (284)
T ss_pred             H
Confidence            6

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=88.96  E-value=3.9  Score=36.86  Aligned_cols=172  Identities=12%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      .-+|-+.......+|||.||+|.-.--.  -.+-+..+|+....++.+    -++.++...+..++++|+=+|   ...+
T Consensus        21 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE---~r~e   97 (239)
T PF03740_consen   21 YPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPE---KREE   97 (239)
T ss_dssp             -S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE-----SGGG
T ss_pred             CCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCC---CCCC
Confidence            3467778888899999999999764211  456688888887665543    467888889999999999888   4322


Q ss_pred             HHHHHHHhCCccceeeCCCCCHH---hHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc
Q psy11600        147 VIRQIKEAGMKVGLAIKPKTPVD---VIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP  223 (277)
Q Consensus       147 ~~~~I~~~g~~~g~~i~p~t~~~---~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~  223 (277)
                      +         ...-|+......+   .+...++..++.+-+.++|..          +.|+..++..-. -++      +
T Consensus        98 ~---------TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~----------~qi~~A~~~Gad-~VE------L  151 (239)
T PF03740_consen   98 L---------TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDP----------EQIEAAKELGAD-RVE------L  151 (239)
T ss_dssp             B---------STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-H----------HHHHHHHHTT-S-EEE------E
T ss_pred             c---------CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCH----------HHHHHHHHcCCC-EEE------E
Confidence            1         1223333333333   334445677888888888852          234444432211 111      1


Q ss_pred             CcHHHHHHccCCCCCcccccCHHHHHHHHHhh--CCCCeEEEeCCCCccCHHHhh
Q psy11600        224 NTIDECAKCLTGFGGQKFMQDMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       224 ~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~--~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      -|-..+-...   .+.....+.++++....+.  ...+.+..=.|+|.+|+..++
T Consensus       152 hTG~yA~a~~---~~~~~~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~  203 (239)
T PF03740_consen  152 HTGPYANAFD---DAEEAEEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIA  203 (239)
T ss_dssp             ETHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHH
T ss_pred             ehhHhhhhcC---CHHHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHH
Confidence            2211111000   0000011113444443322  235778888999999988765

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=88.95  E-value=2.1  Score=39.42  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=54.5

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIEP  125 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~~  125 (277)
                      ...++..|+..|..+  +-+-+.+. +++....++|+|++  -+|.  .+++.++++.+..  ..++.+    -.+-++.
T Consensus       177 ~~av~~~r~~~~~~~--I~VEv~tl-eea~eA~~~gaD~I--~LD~--~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~  249 (277)
T PRK05742        177 AQAVAAAHRIAPGKP--VEVEVESL-DELRQALAAGADIV--MLDE--LSLDDMREAVRLTAGRAKLEASGGINESTLRV  249 (277)
T ss_pred             HHHHHHHHHhCCCCe--EEEEeCCH-HHHHHHHHcCCCEE--EECC--CCHHHHHHHHHHhCCCCcEEEECCCCHHHHHH
Confidence            356778887655544  33445564 45666778999999  4553  4688888777654  335544    5778889


Q ss_pred             HHhcCCCeEEee
Q psy11600        126 MADANVDQYTFH  137 (277)
Q Consensus       126 ~~~~g~d~it~H  137 (277)
                      ++++|+|.|++-
T Consensus       250 ~a~tGvD~Isvg  261 (277)
T PRK05742        250 IAETGVDYISIG  261 (277)
T ss_pred             HHHcCCCEEEEC
Confidence            999999999974

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=88.95  E-value=8.3  Score=34.83  Aligned_cols=116  Identities=8%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeec----------------
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMV----------------   73 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv----------------   73 (277)
                      ++......++ +++++.+.|++.  ++|- +...    -++..++++.+.+.  .+.+.+...-                
T Consensus        78 ~~gGGi~s~~-d~~~l~~~G~~~--vvig-s~~~----~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~  149 (258)
T PRK01033         78 CYGGGIKTLE-QAKKIFSLGVEK--VSIN-TAAL----EDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKK  149 (258)
T ss_pred             EECCCCCCHH-HHHHHHHCCCCE--EEEC-hHHh----cCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeec
Confidence            4445555664 566666789998  5542 2122    25778888887765  3555555432                


Q ss_pred             --cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEE
Q psy11600         74 --QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYT  135 (277)
Q Consensus        74 --~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it  135 (277)
                        .+|.+.++.+.+.|++.+.+|--..+|     -.+.++++++....|+-.      +++..+.+.+.|++-+.
T Consensus       150 ~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi  224 (258)
T PRK01033        150 LKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAA  224 (258)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence              247778899999999999999433333     356688888776666533      55555555566777554

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=88.92  E-value=6.5  Score=35.35  Aligned_cols=117  Identities=11%  Similarity=0.169  Sum_probs=70.5

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeee-----------------
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMM-----------------   72 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlm-----------------   72 (277)
                      +......+.+ .++++...|++.+   +.-..+..    .|+.++++.+.|+  ++.+.+.+.                 
T Consensus        78 ~~~GGi~s~~-d~~~~~~~Ga~~v---ivgt~~~~----~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw  149 (254)
T TIGR00735        78 TVGGGIKSIE-DVDKLLRAGADKV---SINTAAVK----NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGG  149 (254)
T ss_pred             EEECCCCCHH-HHHHHHHcCCCEE---EEChhHhh----ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCC
Confidence            3344444554 4445556788883   33333432    5788889888886  345555432                 


Q ss_pred             ----ccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         73 ----VQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        73 ----v~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                          -.++.++++.+.++|++.+.+|--..+|     ...+++++++.+..|+-.      |++..+.+..-|++.+.+
T Consensus       150 ~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~  228 (254)
T TIGR00735       150 RESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALA  228 (254)
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence                1345677899999999999888433332     347788888877665533      454444444333766543

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=88.92  E-value=16  Score=33.63  Aligned_cols=193  Identities=11%  Similarity=0.116  Sum_probs=96.3

Q ss_pred             ccCcccHHHHHHHHHHcCCCEEEEecccccc--ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600         14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTF--VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY   91 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~f--vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i   91 (277)
                      +.|+..+..-++..++.+...+ +-+-.++.  .+.+..=...++.+.+.++..|+-+||==....+.++...++|.+++
T Consensus        23 ~~n~e~~~avi~aAe~~~~PvI-l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sV  101 (282)
T TIGR01859        23 FNNLEWTQAILEAAEEENSPVI-IQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSV  101 (282)
T ss_pred             ECCHHHHHHHHHHHHHhCCCEE-EEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEE
Confidence            3455556667777777777653 23333322  11111112455666666433899999965557778888999999998


Q ss_pred             EEeccCCCCCHH-HHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHh
Q psy11600         92 TFHVEPVDNVPQ-VIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDV  170 (277)
Q Consensus        92 ~~H~e~~d~g~~-~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~  170 (277)
                        ++|..+...+ .++..++           .++...+.|+   ++..|-+ ....     ++ ....| .-..-|+++.
T Consensus       102 --mid~s~l~~~eni~~t~~-----------v~~~a~~~gv---~Ve~ElG-~~gg-----~e-d~~~g-~~~~~t~~ee  157 (282)
T TIGR01859       102 --MIDGSHLPFEENLALTKK-----------VVEIAHAKGV---SVEAELG-TLGG-----IE-DGVDE-KEAELADPDE  157 (282)
T ss_pred             --EECCCCCCHHHHHHHHHH-----------HHHHHHHcCC---EEEEeeC-CCcC-----cc-ccccc-cccccCCHHH
Confidence              8776543211 2222211           2222223332   2222200 0000     00 00001 0011345555


Q ss_pred             HHHHHh--hcCceEEEEecC---CCCC-chhhhhhhhhHHHHHhhCCCccEEEeC--CCCcCcHHHHHHccCCC
Q psy11600        171 IAEYIE--SADLVLIMTVEP---GFGG-QKFMQDMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKCLTGF  236 (277)
Q Consensus       171 i~~~i~--~~d~vl~mav~P---gt~g-q~~~~~~l~kI~~l~~~~~~~~i~vdG--gV~~~tv~~~~~~gpg~  236 (277)
                      ..++.+  .+|++. .++-|   -+.+ ..+-   ++.++++++.. .+-++.-|  |++.+++.++.++|..-
T Consensus       158 a~~f~~~tgvD~La-vs~Gt~hg~~~~~~~l~---~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~k  226 (282)
T TIGR01859       158 AEQFVKETGVDYLA-AAIGTSHGKYKGEPGLD---FERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAK  226 (282)
T ss_pred             HHHHHHHHCcCEEe-eccCccccccCCCCccC---HHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            555554  355532 21111   1111 1122   34455555443 36788999  99999999999988773

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PLN02428 lipoic acid synthase

Probab=88.85  E-value=4.5  Score=38.54  Aligned_cols=86  Identities=22%  Similarity=0.373  Sum_probs=54.1

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEE------eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC---cHHhHHHHHh
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHL------DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN---PQQWIEPMAD   85 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~------DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---p~~~i~~l~~   85 (277)
                      .|.....+..+.+.+.|++++++      |.-|+.+    ..=.++++.||+..|.+.+.+  .+.+   -.+.++.+.+
T Consensus       130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga----~~~~elir~Ir~~~P~i~Ie~--L~pdf~~d~elL~~L~e  203 (349)
T PLN02428        130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGS----GHFAETVRRLKQLKPEILVEA--LVPDFRGDLGAVETVAT  203 (349)
T ss_pred             CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccH----HHHHHHHHHHHHhCCCcEEEE--eCccccCCHHHHHHHHH
Confidence            45556667778888889999887      3333221    122477888888766543333  2112   1457999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHH
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIK  109 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~  109 (277)
                      +|++.++...|.   .+.+-+.++
T Consensus       204 AG~d~i~hnlET---v~rL~~~Ir  224 (349)
T PLN02428        204 SGLDVFAHNIET---VERLQRIVR  224 (349)
T ss_pred             cCCCEEccCccC---cHHHHHHhc
Confidence            999998655553   344555454

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=88.85  E-value=27  Score=34.92  Aligned_cols=69  Identities=14%  Similarity=0.326  Sum_probs=43.5

Q ss_pred             HHHHHHHHcCCCEEEEeccccc-cccCCCC---C-HHHHHHHHhcCCCCeeeeeeecc-------Cc----HHhHHHHHh
Q psy11600         22 SESQNLLDSGADYLHLDVMDGT-FVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQ-------NP----QQWIEPMAD   85 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~-fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~-------~p----~~~i~~l~~   85 (277)
                      .-.+.+.+.|++.  +.+.=|. |--++.|   . .+.++.+|+..|+.++-..+--.       .|    ...++...+
T Consensus        31 ~ia~~ld~~G~~s--iE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~  108 (499)
T PRK12330         31 GACEDIDNAGYWS--VECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAE  108 (499)
T ss_pred             HHHHHHHhcCCCE--EEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHH
Confidence            4445566677777  6666332 4333444   3 36799999988888877655211       23    335777788


Q ss_pred             cCCCeEE
Q psy11600         86 ANVDQYT   92 (277)
Q Consensus        86 ag~d~i~   92 (277)
                      +|+|+++
T Consensus       109 ~Gidi~R  115 (499)
T PRK12330        109 NGMDVFR  115 (499)
T ss_pred             cCCCEEE
Confidence            8999983

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=88.84  E-value=5.4  Score=36.84  Aligned_cols=128  Identities=14%  Similarity=0.139  Sum_probs=95.0

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm   72 (277)
                      |=.+..|-..-.+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-++.  ++.+++                 .-+
T Consensus        74 PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~  151 (282)
T TIGR01858        74 PLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQ--DCSVEAELGRLGGVEDDLSVDEEDAL  151 (282)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEecCCccCCCccccchhc
Confidence            4556677776667788888899999999877777877887777777776653  333322                 123


Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..+|++-.+.+.+.|+|++.+=+-..-|        -.+.++.|++.+..|+-+      |++.+...+++|..-|-+..
T Consensus       152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T  231 (282)
T TIGR01858       152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT  231 (282)
T ss_pred             cCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            5578777777778999999765554333        678999999988766533      99999999999999999977


Q ss_pred             C
Q psy11600        139 E  139 (277)
Q Consensus       139 E  139 (277)
                      |
T Consensus       232 ~  232 (282)
T TIGR01858       232 E  232 (282)
T ss_pred             H
Confidence            6

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK08999 hypothetical protein; Provisional

Probab=88.76  E-value=6.5  Score=36.18  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=26.1

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +.++++++. .++-+...|||+.+|+.++.++|++.
T Consensus       270 ~~~~~~~~~-~~~Pv~AiGGI~~~~~~~~~~~g~~g  304 (312)
T PRK08999        270 EGFAALIAG-VPLPVYALGGLGPGDLEEAREHGAQG  304 (312)
T ss_pred             HHHHHHHHh-CCCCEEEECCCCHHHHHHHHHhCCCE
Confidence            344554432 34678899999999999999988764

>PRK07094 biotin synthase; Provisional

Probab=88.66  E-value=20  Score=33.14  Aligned_cols=163  Identities=14%  Similarity=0.170  Sum_probs=88.0

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC-C----CHHHHHHHHhhCCCcc--c---chhhhhHHHHhcCCCeEEeecCCCCCh-HH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD-N----VPQVIRQIKEAGMKVG--Q---VLQDWIEPMADANVDQYTFHVEPVDNV-PQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d-~----g~~~i~~i~~~~~~~~--d---~p~~~i~~~~~~g~d~it~H~E~~~~~-~~  146 (277)
                      +.++.+.+.|+..+.+...-.. .    -.++++.+++.....+  .   ...+.++.|.++|++.+.+-+|   +. ++
T Consensus        77 ~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glE---s~~~~  153 (323)
T PRK07094         77 ECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHE---TADKE  153 (323)
T ss_pred             HHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccc---cCCHH
Confidence            3456666789999977632111 1    3345666666422211  1   2577899999999999999998   65 34


Q ss_pred             HHHHHHHhCCccceeeCCCCCHHhHHH---HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc
Q psy11600        147 VIRQIKEAGMKVGLAIKPKTPVDVIAE---YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP  223 (277)
Q Consensus       147 ~~~~I~~~g~~~g~~i~p~t~~~~i~~---~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~  223 (277)
                      +++.++           ++.+.+.+.+   .+.+.++.+...+--|.+|+.. ++..+.++.++++.+..  .   +++.
T Consensus       154 ~~~~i~-----------~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~-ed~~~~l~~l~~l~~~~--v---~~~~  216 (323)
T PRK07094        154 LYAKLH-----------PGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTL-EDLADDILFLKELDLDM--I---GIGP  216 (323)
T ss_pred             HHHHhC-----------CCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCH-HHHHHHHHHHHhCCCCe--e---eeec
Confidence            443332           2334444433   3455666555555556666543 56666666666544321  1   1111


Q ss_pred             CcHHHHHHccCCC--CCccc--ccCHHHHHHHHHhhCCCCeEEEeCC
Q psy11600        224 NTIDECAKCLTGF--GGQKF--MQDMMPKVKWLRENYPTLNIEVDGG  266 (277)
Q Consensus       224 ~tv~~~~~~gpg~--ggq~F--~~~~~~kI~~l~~~~~~~~I~VDGG  266 (277)
                      .+-      -||-  .....  ..+.++.++.+|...|+..|..-++
T Consensus       217 ~~P------~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~  257 (323)
T PRK07094        217 FIP------HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTA  257 (323)
T ss_pred             ccc------CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCC
Confidence            111      1331  11111  1234666666777777766655554

>PLN02389 biotin synthase

Probab=88.65  E-value=12  Score=35.96  Aligned_cols=78  Identities=10%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccc--cccCCCC--CHHHHHHHHhcCCCCeeeeeeeccC-cHHhHHHHHhcCCC
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGT--FVPNLTF--GHPVVKCLRNKIPKAFFETHMMVQN-PQQWIEPMADANVD   89 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~--fvp~~~~--g~~~v~~l~~~~~~~~~d~Hlmv~~-p~~~i~~l~~ag~d   89 (277)
                      .+...+.+..+.+.+.|+..+|+ +..|.  +-+...|  =.+.++.+|+    ..+.++.-... ..+.++.|.++|+|
T Consensus       116 Ls~EeIl~~a~~~~~~G~~~~~i-vts~rg~~~e~~~~e~i~eiir~ik~----~~l~i~~s~G~l~~E~l~~LkeAGld  190 (379)
T PLN02389        116 MSKDDVLEAAKRAKEAGSTRFCM-GAAWRDTVGRKTNFNQILEYVKEIRG----MGMEVCCTLGMLEKEQAAQLKEAGLT  190 (379)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEE-EecccCCCCChhHHHHHHHHHHHHhc----CCcEEEECCCCCCHHHHHHHHHcCCC
Confidence            45566677777788889999886 22211  1111112  2245666653    22344432222 34568899999999


Q ss_pred             eEEEeccC
Q psy11600         90 QYTFHVEP   97 (277)
Q Consensus        90 ~i~~H~e~   97 (277)
                      .++.-+|.
T Consensus       191 ~~~~~LeT  198 (379)
T PLN02389        191 AYNHNLDT  198 (379)
T ss_pred             EEEeeecC
Confidence            99544443

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=88.61  E-value=9.1  Score=34.82  Aligned_cols=108  Identities=25%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhCCccceeeCCCCCHHhHHHHH---hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE-eCC
Q psy11600        145 PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI---ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV-DGG  220 (277)
Q Consensus       145 ~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i---~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v-dGg  220 (277)
                      +++.+.++++|.. |+-+ |..|+++..++.   +..++-++.-+.|.|+.        ++++.+.+..+.+-..+ -.|
T Consensus       107 e~f~~~~~~aGvd-Gvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~--------eri~~i~~~s~gfIY~vs~~G  176 (258)
T PRK13111        107 ERFAADAAEAGVD-GLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTD--------ERLKKIASHASGFVYYVSRAG  176 (258)
T ss_pred             HHHHHHHHHcCCc-EEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHhCCCcEEEEeCCC
Confidence            4566777777622 4444 889998666654   56677777777888762        45666666555543322 111


Q ss_pred             CCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCC-CccCHHHhh
Q psy11600        221 VGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECA  276 (277)
Q Consensus       221 V~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI-~~~~~~~~~  276 (277)
                      ++            | ....+.++..+.++++|+.. +..+-|-||| |+++++++.
T Consensus       177 vT------------G-~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~  219 (258)
T PRK13111        177 VT------------G-ARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIA  219 (258)
T ss_pred             CC------------C-cccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHH
Confidence            11            1 12344456677888888754 5668899999 568877654

>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins

Probab=88.53  E-value=3  Score=36.30  Aligned_cols=85  Identities=16%  Similarity=0.253  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIE  124 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~  124 (277)
                      .+|.++.++.+|+..|++++- .+....+....+.+.+.+++.+++++..  ..+++|+.+++.+..+.  .+ -...+.
T Consensus       138 ~Sf~~~~l~~~~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~v~~wTvn~~~~~~  214 (229)
T cd08562         138 SSFSLEALRAARRAAPELPLG-LLFDTLPADWLELLAALGAVSIHLNYRG--LTEEQVKALKDAGYKLLVYTVNDPARAA  214 (229)
T ss_pred             ECCCHHHHHHHHHhCCCCcEE-EEecCCCcCHHHHHHHcCCeEEecChhh--CCHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            468899999999988886552 2333345556666677788877444333  35788888888776533  22 244567


Q ss_pred             HHHhcCCCeEE
Q psy11600        125 PMADANVDQYT  135 (277)
Q Consensus       125 ~~~~~g~d~it  135 (277)
                      .+.+.|+|.|+
T Consensus       215 ~~~~~gVdgii  225 (229)
T cd08562         215 ELLEWGVDAIF  225 (229)
T ss_pred             HHHHCCCCEEE
Confidence            77788888765

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)

>PRK06233 hypothetical protein; Provisional

Probab=88.49  E-value=14  Score=35.39  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeccc
Q psy11600         20 LHSESQNLLDSGADYLHLDVMD   41 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimD   41 (277)
                      +.+|++.|.++|+++|.+|==.
T Consensus       173 ~~~Ei~~L~~aG~~~IQiDeP~  194 (372)
T PRK06233        173 YHDTIQHFYDLGARYIQLDDTT  194 (372)
T ss_pred             HHHHHHHHHHCCCCEEEEcCCC
Confidence            5688999999999999998433

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=88.42  E-value=7  Score=36.22  Aligned_cols=128  Identities=15%  Similarity=0.162  Sum_probs=95.6

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm   72 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.-+|=-|+..--++++.-++.  ++.+++                 .-+
T Consensus        76 PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~--gv~VEaElG~igg~ed~~~~~~~~~~  153 (286)
T PRK12738         76 PLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQ--DCSVEAELGRLGGVEDDMSVDAESAF  153 (286)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeCCccCCcccccchhc
Confidence            4456677775566777788889999999988878888888888888777753  333322                 122


Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..+|++-.+...+.|+|++.+=+-..-|        -.+.++.|++.++.|+-+      |++.+...+++|..-|-+..
T Consensus       154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T  233 (286)
T PRK12738        154 LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVAT  233 (286)
T ss_pred             CCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            4578887877778899999776654333        678899999988776533      89999999999999999977


Q ss_pred             C
Q psy11600        139 E  139 (277)
Q Consensus       139 E  139 (277)
                      |
T Consensus       234 ~  234 (286)
T PRK12738        234 E  234 (286)
T ss_pred             H
Confidence            6

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=88.35  E-value=20  Score=36.59  Aligned_cols=72  Identities=19%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc-ccccCCCC---C-HHHHHHHHhcCCCCeeeeeeeccCc-----------HHhHHH
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG-TFVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQNP-----------QQWIEP   82 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~~p-----------~~~i~~   82 (277)
                      ..-.-++.|.+.|++.  +.+.-| +|--++.|   . .+.++.+|+..|+.++-+.+-..|.           ...++.
T Consensus        27 d~l~ia~~l~~~G~~~--iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~  104 (592)
T PRK09282         27 DMLPIAEKLDKVGFWS--LEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEK  104 (592)
T ss_pred             HHHHHHHHHHHcCCCE--EEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHH
Confidence            3344555677778887  677544 33322333   2 3557777777788887766554432           234777


Q ss_pred             HHhcCCCeEE
Q psy11600         83 MADANVDQYT   92 (277)
Q Consensus        83 l~~ag~d~i~   92 (277)
                      ..++|+|++.
T Consensus       105 A~~~Gvd~ir  114 (592)
T PRK09282        105 AAENGIDIFR  114 (592)
T ss_pred             HHHCCCCEEE
Confidence            7888999884

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=88.20  E-value=17  Score=32.92  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC----CCeEE
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN----VDQYT   92 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag----~d~i~   92 (277)
                      .....+-++.|.+.|++.  +.+  |.|+-+=. ..+.++.+++..++..+.+..  .--.+.++...++|    ++++.
T Consensus        19 ~~~k~~i~~~L~~~Gv~~--iEv--g~~~~~~~-~~~~~~~l~~~~~~~~~~~l~--r~~~~~v~~a~~~~~~~~~~~i~   91 (268)
T cd07940          19 PEEKLEIARQLDELGVDV--IEA--GFPAASPG-DFEAVKRIAREVLNAEICGLA--RAVKKDIDAAAEALKPAKVDRIH   91 (268)
T ss_pred             HHHHHHHHHHHHHcCCCE--EEE--eCCCCCHH-HHHHHHHHHHhCCCCEEEEEc--cCCHhhHHHHHHhCCCCCCCEEE
Confidence            334455677788888777  444  54541000 126778888755676665544  22245577788888    99986


Q ss_pred             EeccC
Q psy11600         93 FHVEP   97 (277)
Q Consensus        93 ~H~e~   97 (277)
                      +-.-+
T Consensus        92 i~~~~   96 (268)
T cd07940          92 TFIAT   96 (268)
T ss_pred             EEecC
Confidence            65433

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=88.07  E-value=4.9  Score=38.91  Aligned_cols=81  Identities=9%  Similarity=0.110  Sum_probs=55.0

Q ss_pred             eEeeecccc-CcccHHHHHHHHHHcCCCEEEEeccccccccC-CC---C------C----HHHHHHHHhcCCCCeeeeee
Q psy11600          7 MIGPSILNS-DLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-LT---F------G----HPVVKCLRNKIPKAFFETHM   71 (277)
Q Consensus         7 ~~~~s~~~~-d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-~~---~------g----~~~v~~l~~~~~~~~~d~Hl   71 (277)
                      .+.+||... +...+.+..+.+++.|+|+  +|+  .-..|| ..   +      -    -++++.+|+. +++|+.+=|
T Consensus       101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~--iel--N~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl  175 (420)
T PRK08318        101 ALIASIMVECNEEEWKEIAPLVEETGADG--IEL--NFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKL  175 (420)
T ss_pred             eEEEEeccCCCHHHHHHHHHHHHhcCCCE--EEE--eCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEc
Confidence            367899887 7888888899999888887  333  223455 11   1      1    2457777764 677877766


Q ss_pred             ec--cCcHHhHHHHHhcCCCeEE
Q psy11600         72 MV--QNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        72 mv--~~p~~~i~~l~~ag~d~i~   92 (277)
                      =-  .+..+..+.+.++|+|.++
T Consensus       176 ~p~~~~~~~~a~~~~~~Gadgi~  198 (420)
T PRK08318        176 TPNITDIREPARAAKRGGADAVS  198 (420)
T ss_pred             CCCcccHHHHHHHHHHCCCCEEE
Confidence            42  2344567778899999998

>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form

Probab=88.03  E-value=13  Score=33.90  Aligned_cols=163  Identities=13%  Similarity=0.148  Sum_probs=97.9

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCc-----HHhHHH
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP-----QQWIEP   82 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p-----~~~i~~   82 (277)
                      +.|.-=..+..++-+.++.|.+.+.|+  +.|-||.--..-.-...+.+.|++. ..++.-+|+-..+-     ..++..
T Consensus         5 ~~PP~~~~~~~~l~~~~~~l~~~~pd~--isvT~~~~~~~~~~t~~~a~~l~~~-~g~~~i~Hlt~r~~n~~~l~~~L~~   81 (272)
T TIGR00676         5 FFPPKTDEGEENLWETVDRLSPLDPDF--VSVTYGAGGSTRDRTVRIVRRIKKE-TGIPTVPHLTCIGATREEIREILRE   81 (272)
T ss_pred             EECcCCchhHHHHHHHHHHHhcCCCCE--EEeccCCCCCcHHHHHHHHHHHHHh-cCCCeeEEeeecCCCHHHHHHHHHH
Confidence            444444344578888999999999999  8998876643222234556777754 58899999998873     345677


Q ss_pred             HHhcCCCeEE-EeccCC-----------CCCHHHHHHHHhhCC-Ccccc---hh------------hhhHHHHhcCCCeE
Q psy11600         83 MADANVDQYT-FHVEPV-----------DNVPQVIRQIKEAGM-KVGQV---LQ------------DWIEPMADANVDQY  134 (277)
Q Consensus        83 l~~ag~d~i~-~H~e~~-----------d~g~~~i~~i~~~~~-~~~d~---p~------------~~i~~~~~~g~d~i  134 (277)
                      +.++|++.+- +=-|..           +...++|+.+++... ..+-+   |+            ++++.=.++||+++
T Consensus        82 ~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~  161 (272)
T TIGR00676        82 YRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYA  161 (272)
T ss_pred             HHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence            7888988663 112221           226678888887632 21110   22            34555568999866


Q ss_pred             Eee----cCCCCChHHHHHHHHHhC--CccceeeCCCCCHHhHHHHHh
Q psy11600        135 TFH----VEPVDNVPQVIRQIKEAG--MKVGLAIKPKTPVDVIAEYIE  176 (277)
Q Consensus       135 t~H----~E~~~~~~~~~~~I~~~g--~~~g~~i~p~t~~~~i~~~i~  176 (277)
                      .=+    .+   ...+..+.+++.|  ...=.|+.|-++...+..+..
T Consensus       162 iTQ~~fd~~---~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~  206 (272)
T TIGR00676       162 ITQLFFDND---DYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAE  206 (272)
T ss_pred             eeccccCHH---HHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHh
Confidence            533    33   3344555555554  233455556666554444443

This protein is an FAD-containing flavoprotein.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=88.01  E-value=8.9  Score=35.49  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=49.2

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      -.|.+.|++.|+|++  |   .+-++.  --.+++..+|++| +.||-+.  +.|+++-++. .+.|+|+|.=..+.-++
T Consensus        79 ~~Ea~~L~~~GvDiI--D---eTe~lr--Pade~~~~~K~~f-~vpfmad--~~~l~EAlra-i~~GadmI~Tt~e~gTg  147 (287)
T TIGR00343        79 FVEAQILEALGVDYI--D---ESEVLT--PADWTFHIDKKKF-KVPFVCG--ARDLGEALRR-INEGAAMIRTKGEAGTG  147 (287)
T ss_pred             HHHHHHHHHcCCCEE--E---ccCCCC--cHHHHHHHHHHHc-CCCEEcc--CCCHHHHHHH-HHCCCCEEeccccCCCc
Confidence            578899999999994  4   555532  2468888888876 7777665  3577777765 46799999766665444

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=87.89  E-value=5.8  Score=35.84  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=75.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEE--EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC--------
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYL--HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN--------   75 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~--h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~--------   75 (277)
                      .+|..++...+...+-++.+.+.+.|+|.+  =+|..+. + ++...-...++++++.++++|+-+++-...        
T Consensus        16 ~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~-~-~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~   93 (253)
T PRK02412         16 PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEK-I-SDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALS   93 (253)
T ss_pred             cEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhc-c-CCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCC
Confidence            478889998888888888888777777763  3455542 1 122222346677777667889998887553        


Q ss_pred             cHHh---HHHHHhcC-CCeEEEeccCCCC---CHHHHHHHHhhCCC----cccc---h-----hhhhHHHHhcCCCeEEe
Q psy11600         76 PQQW---IEPMADAN-VDQYTFHVEPVDN---VPQVIRQIKEAGMK----VGQV---L-----QDWIEPMADANVDQYTF  136 (277)
Q Consensus        76 p~~~---i~~l~~ag-~d~i~~H~e~~d~---g~~~i~~i~~~~~~----~~d~---p-----~~~i~~~~~~g~d~it~  136 (277)
                      .+++   ++.+.+.| +|++  .+|....   -.++++.+++.+..    .|+.   |     ..+++.+.+.|||.+=+
T Consensus        94 ~~~~~~ll~~~~~~~~~d~v--DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKi  171 (253)
T PRK02412         94 DEEYLALIKAVIKSGLPDYI--DVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKI  171 (253)
T ss_pred             HHHHHHHHHHHHhcCCCCEE--EEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence            2333   44455667 8999  6664221   22233344433322    2332   4     23455666667775544


Q ss_pred             ec
Q psy11600        137 HV  138 (277)
Q Consensus       137 H~  138 (277)
                      =.
T Consensus       172 a~  173 (253)
T PRK02412        172 AV  173 (253)
T ss_pred             Ee
Confidence            33

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=87.85  E-value=6.6  Score=35.76  Aligned_cols=191  Identities=13%  Similarity=0.156  Sum_probs=110.7

Q ss_pred             HHHHHHHHhcCCCCe-eeeeeeccCcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhh
Q psy11600         52 HPVVKCLRNKIPKAF-FETHMMVQNPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWI  123 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~-~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i  123 (277)
                      +.+|.++|+.-|..- +..|   .+|.++.+.+.++||..+++--|..  .|.++.++.+|.....|+.+     -...|
T Consensus        46 ~~vIAEvKkaSPS~G~ir~d---~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI  122 (254)
T COG0134          46 PAVIAEVKKASPSKGLIRED---FDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQI  122 (254)
T ss_pred             ceEEEEeecCCCCCCccccc---CCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHH
Confidence            344555555545432 2222   3788899999999999999988874  67999999999999988865     24456


Q ss_pred             HHHHhcCCCeEEeecCCCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhh
Q psy11600        124 EPMADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMP  201 (277)
Q Consensus       124 ~~~~~~g~d~it~H~E~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~  201 (277)
                      ..-..+|||.|-+-+..-+  ....+.+..+..||.+=+-+.   ..+++...++ .+..+ +.+|-- ....| +--++
T Consensus       123 ~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh---~~eEl~rAl~-~ga~i-IGINnR-dL~tf-~vdl~  195 (254)
T COG0134         123 YEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH---NEEELERALK-LGAKI-IGINNR-DLTTL-EVDLE  195 (254)
T ss_pred             HHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC---CHHHHHHHHh-CCCCE-EEEeCC-Ccchh-eecHH
Confidence            6667889998776554000  122344444444433211111   1234444444 33332 444531 11111 11233


Q ss_pred             hHHHHHhhCCC-ccEEEeCCCC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHH
Q psy11600        202 KVKWLRENYPT-LNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWL  252 (277)
Q Consensus       202 kI~~l~~~~~~-~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l  252 (277)
                      .-..+.+..|. .-++.-.||. ...+..+.+.|++.   |.+.+. ++..+.++++
T Consensus       196 ~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l  252 (254)
T COG0134         196 TTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL  252 (254)
T ss_pred             HHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHh
Confidence            34455566664 5566677776 67777788888873   666665 3555555554

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=87.76  E-value=20  Score=32.56  Aligned_cols=150  Identities=15%  Similarity=0.097  Sum_probs=0.0

Q ss_pred             HhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc---hhhhhHHHHhc--CCCeE-EeecCCCCC--h
Q psy11600         78 QWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV---LQDWIEPMADA--NVDQY-TFHVEPVDN--V  144 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~--g~d~i-t~H~E~~~~--~  144 (277)
                      +....+.++|||+|=+=.++...     -.++|+.+++.+..|+.+   -...++.-.++  |+++| ++-.|   .  .
T Consensus        29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~---~~~~  105 (261)
T PRK07535         29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAE---GEKL  105 (261)
T ss_pred             HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCC---CccC


Q ss_pred             HHHHHHHHHhCCccceeeC--CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh-CCCccEEEeCCC
Q psy11600        145 PQVIRQIKEAGMKVGLAIK--PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGV  221 (277)
Q Consensus       145 ~~~~~~I~~~g~~~g~~i~--p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~-~~~~~i~vdGgV  221 (277)
                      +...+.+++.|...-+-..  .|                     .|.|. |..++.+.+.++.+.+. .+.-+|.+|.|+
T Consensus       106 ~~~~~l~~~~g~~vv~m~~~~~g---------------------~P~t~-~~~~~~l~~~v~~a~~~GI~~~~IilDPgi  163 (261)
T PRK07535        106 EVVLPLVKKYNAPVVALTMDDTG---------------------IPKDA-EDRLAVAKELVEKADEYGIPPEDIYIDPLV  163 (261)
T ss_pred             HHHHHHHHHhCCCEEEEecCCCC---------------------CCCCH-HHHHHHHHHHHHHHHHcCCCHhHEEEeCCC


Q ss_pred             CcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEE
Q psy11600        222 GPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEV  263 (277)
Q Consensus       222 ~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~V  263 (277)
                                 ||-..++.-.-.+++.++++++.+|.+.+-+
T Consensus       164 -----------~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~  194 (261)
T PRK07535        164 -----------LPLSAAQDAGPEVLETIRRIKELYPKVHTTC  194 (261)
T ss_pred             -----------CcccCChHHHHHHHHHHHHHHHhCCCCCEEE

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=87.75  E-value=6.1  Score=36.68  Aligned_cols=126  Identities=14%  Similarity=0.106  Sum_probs=88.3

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--e-----------eec-cC
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--H-----------MMV-QN   75 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--H-----------lmv-~~   75 (277)
                      |=.+..|-.+++ .+++..+.|.+++.+|--+-+|-.|+...-++++.-++.  ++++..  .           .-. .+
T Consensus        79 PV~lHLDH~~~~-~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~--gv~vE~ElG~i~g~ed~~~g~s~~t~  155 (293)
T PRK07315         79 PVAIHLDHGHYE-DALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAK--GISVEAEVGTIGGEEDGIIGKGELAP  155 (293)
T ss_pred             cEEEECCCCCHH-HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCcccCcCccccCccCCCC
Confidence            555677877544 667777889999999998888887877766666554432  332221  1           112 46


Q ss_pred             cHHhHHHHHhcCCCeEEEeccCC---------CCCHHHHHHHHhhCC-Cccc------chhhhhHHHHhcCCCeEEeecC
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPV---------DNVPQVIRQIKEAGM-KVGQ------VLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~---------d~g~~~i~~i~~~~~-~~~d------~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      |++-.+ +.+.|+|++.+=+-..         .-+.+.++.+++... .|+-      +|.+-+...+++|+..|.+..+
T Consensus       156 peea~~-f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~  234 (293)
T PRK07315        156 IEDAKA-MVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTE  234 (293)
T ss_pred             HHHHHH-HHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccH
Confidence            766544 5588999996653222         138899999999884 6653      3889999999999999999876

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=87.71  E-value=12  Score=33.25  Aligned_cols=119  Identities=13%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeec--------------
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMV--------------   73 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv--------------   73 (277)
                      |=+.+....+.++. +.+.+.|++.  +.+- ..+.    -+|++++++.+.+.  ++.+.+..+.              
T Consensus        73 pv~~~GGI~s~~d~-~~~l~~G~~~--v~ig-~~~~----~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~  144 (243)
T cd04731          73 PLTVGGGIRSLEDA-RRLLRAGADK--VSIN-SAAV----ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGR  144 (243)
T ss_pred             CEEEeCCCCCHHHH-HHHHHcCCce--EEEC-chhh----hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCc
Confidence            44555666666544 4555578888  4332 2222    26788888877665  2555555441              


Q ss_pred             ----cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         74 ----QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        74 ----~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                          .+..+.++.+.+.|++.+.+|--..++     ...+++.+++....|+-.      |++..+.+...|+|.+.+
T Consensus       145 ~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v  222 (243)
T cd04731         145 KPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA  222 (243)
T ss_pred             eecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence                234566788899999999998532222     356677777766555432      444333333346665554

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=87.58  E-value=4.2  Score=40.63  Aligned_cols=109  Identities=12%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--eccC-
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVEP-   97 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e~-   97 (277)
                      .+-++.|.++|+|.+=+|.-+|+-.    .-.+.++++|+.+|+.++-+- -|..++ ....+.++|+|.|.+  |.-. 
T Consensus       250 ~~r~~~l~~ag~d~i~iD~~~g~~~----~~~~~i~~ik~~~p~~~vi~g-~v~t~e-~a~~a~~aGaD~i~vg~g~G~~  323 (505)
T PLN02274        250 KERLEHLVKAGVDVVVLDSSQGDSI----YQLEMIKYIKKTYPELDVIGG-NVVTMY-QAQNLIQAGVDGLRVGMGSGSI  323 (505)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcH----HHHHHHHHHHHhCCCCcEEEe-cCCCHH-HHHHHHHcCcCEEEECCCCCcc
Confidence            4677788889999999999877643    223679999998877543210 133344 466778899999843  3210 


Q ss_pred             --C-----CCCH-----HHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         98 --V-----DNVP-----QVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 --~-----d~g~-----~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                        .     -|.|     ..+.++.+....|+-+      |.+.++.|+ +||+.+-+
T Consensus       324 ~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla-~GA~~V~v  379 (505)
T PLN02274        324 CTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALT-LGASTVMM  379 (505)
T ss_pred             ccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence              0     0111     1244444433344322      666666665 68886655

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=87.44  E-value=4  Score=37.97  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCC-C-cccc----hhhhhHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-K-VGQV----LQDWIEP  125 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~-~-~~d~----p~~~i~~  125 (277)
                      .+.++.+|+..|..+  +-+-+.+++ ++....++|+|.|  .+|-|+  |+.++++-+... . .+.+    ..+-+..
T Consensus       196 ~~av~~~r~~~~~~k--IeVEv~sle-ea~ea~~~gaDiI--~LDn~s--~e~~~~av~~~~~~~~ieaSGGI~~~ni~~  268 (296)
T PRK09016        196 RQAVEKAFWLHPDVP--VEVEVENLD-ELDQALKAGADII--MLDNFT--TEQMREAVKRTNGRALLEVSGNVTLETLRE  268 (296)
T ss_pred             HHHHHHHHHhCCCCC--EEEEeCCHH-HHHHHHHcCCCEE--EeCCCC--hHHHHHHHHhhcCCeEEEEECCCCHHHHHH
Confidence            367888887767655  455666754 5556778999999  777665  555555544322 2 3333    6889999


Q ss_pred             HHhcCCCeEEee
Q psy11600        126 MADANVDQYTFH  137 (277)
Q Consensus       126 ~~~~g~d~it~H  137 (277)
                      +++.|+|+|+.-
T Consensus       269 yA~tGVD~Is~g  280 (296)
T PRK09016        269 FAETGVDFISVG  280 (296)
T ss_pred             HHhcCCCEEEeC
Confidence            999999999974

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=87.38  E-value=4.8  Score=39.95  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEEecc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~H~e   96 (277)
                      +..+.++.|.+.|+|.+=+|.-.|+-.    .-.++++++|++||+.+    +|..|-.  +..+.+.++|+|.+-+=+-
T Consensus       227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~----~~~~~i~~ik~~~p~~~----v~agnv~t~~~a~~l~~aGad~v~vgig  298 (479)
T PRK07807        227 DVAAKARALLEAGVDVLVVDTAHGHQE----KMLEALRAVRALDPGVP----IVAGNVVTAEGTRDLVEAGADIVKVGVG  298 (479)
T ss_pred             hHHHHHHHHHHhCCCEEEEeccCCccH----HHHHHHHHHHHHCCCCe----EEeeccCCHHHHHHHHHcCCCEEEECcc
Confidence            455778888899999999999999821    33478999999888754    4554432  3466778899999853333


Q ss_pred             C----CC----C-CHHHHHHHHhhC------CCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         97 P----VD----N-VPQVIRQIKEAG------MKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        97 ~----~d----~-g~~~i~~i~~~~------~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      +    ..    + |...+.++.+..      ..|+-+      |.+..+.++ +||+.+-+
T Consensus       299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~-~ga~~v~~  358 (479)
T PRK07807        299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA-AGASNVMI  358 (479)
T ss_pred             CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH-cCCCeeec
Confidence            2    11    1 333444443322      122211      777777776 68876654

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=87.19  E-value=22  Score=31.99  Aligned_cols=182  Identities=18%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             HHHHHHHHcCCCEEEEeccc---cccccCCCCCHHHHHHHHhcCC-CCeeeeee-----eccCcHHhHHHHHhcCCCeEE
Q psy11600         22 SESQNLLDSGADYLHLDVMD---GTFVPNLTFGHPVVKCLRNKIP-KAFFETHM-----MVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimD---g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hl-----mv~~p~~~i~~l~~ag~d~i~   92 (277)
                      +|-....+.|+|.  +|+=|   |..-   ...+++|++++...+ +.|+++=+     .-.............|+||+-
T Consensus        11 ~EA~~a~~~gaDi--ID~K~P~~GaLG---A~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvK   85 (235)
T PF04476_consen   11 EEAEEALAGGADI--IDLKNPAEGALG---ALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVK   85 (235)
T ss_pred             HHHHHHHhCCCCE--EEccCCCCCCCC---CCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEE


Q ss_pred             EeccCCCCCHHHHHHHHhhCCCcccc---------------------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHH
Q psy11600         93 FHVEPVDNVPQVIRQIKEAGMKVGQV---------------------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQI  151 (277)
Q Consensus        93 ~H~e~~d~g~~~i~~i~~~~~~~~d~---------------------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I  151 (277)
                      +=+-......+.++.++......-+.                     |..+.+..+++|++.+-+      ++..     
T Consensus        86 vGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMl------DTa~-----  154 (235)
T PF04476_consen   86 VGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVML------DTAD-----  154 (235)
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEE------eccc-----


Q ss_pred             HHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH
Q psy11600        152 KEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  231 (277)
Q Consensus       152 ~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~  231 (277)
                           |-|-.+---.+.+.+..+                            ++..+.  .++...+.|+++..-++.+..
T Consensus       155 -----Kdg~~L~d~~~~~~L~~F----------------------------v~~ar~--~gL~~aLAGSL~~~di~~L~~  199 (235)
T PF04476_consen  155 -----KDGGSLFDHLSEEELAEF----------------------------VAQARA--HGLMCALAGSLRFEDIPRLKR  199 (235)
T ss_pred             -----CCCCchhhcCCHHHHHHH----------------------------HHHHHH--ccchhhccccCChhHHHHHHh


Q ss_pred             ccCCC---------CCcccc-cCHHHHHHHHHh
Q psy11600        232 CLTGF---------GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       232 ~gpg~---------ggq~F~-~~~~~kI~~l~~  254 (277)
                      .+|+|         ||+.-. .--.++|+++|+
T Consensus       200 l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~  232 (235)
T PF04476_consen  200 LGPDILGFRGAVCGGGDRRAGRIDPELVAALRA  232 (235)
T ss_pred             cCCCEEEechhhCCCCCcCccccCHHHHHHHHH

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=87.16  E-value=9.6  Score=35.37  Aligned_cols=69  Identities=16%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      -.|.+.|++.|+|++  |   .+-++.  --.+++..+|+.| +.+|-+.  +.++++.+.. .+.|+|+|.-.-|+.+|
T Consensus        86 ~~Ea~~L~~~GvDiI--D---~Te~lr--pad~~~~~~K~~f-~~~fmad--~~~l~EAlra-i~~GadmI~Ttge~gtg  154 (293)
T PRK04180         86 FVEAQILEALGVDYI--D---ESEVLT--PADEEYHIDKWDF-TVPFVCG--ARNLGEALRR-IAEGAAMIRTKGEAGTG  154 (293)
T ss_pred             HHHHHHHHHcCCCEE--e---ccCCCC--chHHHHHHHHHHc-CCCEEcc--CCCHHHHHHH-HHCCCCeeeccCCCCCc
Confidence            478889999999994  5   455432  2447888888876 6666554  3467776765 55799999767666555

>PRK12928 lipoyl synthase; Provisional

Probab=86.98  E-value=2.6  Score=39.06  Aligned_cols=92  Identities=13%  Similarity=0.255  Sum_probs=57.8

Q ss_pred             ccCcccHHHHHHHHHHcCCCEEEEeccccccccCCC--CCHHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHHHhcC
Q psy11600         14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT--FGHPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPMADAN   87 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--~g~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l~~ag   87 (277)
                      +.+.....+.++.+.+.|++.+|+-=.+..-.|+..  .=.++++.+++..|..  -++..+.++    .+.+..+.++|
T Consensus        86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~--~I~~ltp~~~~~~~e~L~~l~~Ag  163 (290)
T PRK12928         86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT--GIEVLTPDFWGGQRERLATVLAAK  163 (290)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC--EEEEeccccccCCHHHHHHHHHcC
Confidence            356777788888888999999888221100012211  1257888998865654  445555554    34688899999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHh
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      ++.+..-+|   .++.+.+.+++
T Consensus       164 ~~i~~hnlE---t~~~vl~~m~r  183 (290)
T PRK12928        164 PDVFNHNLE---TVPRLQKAVRR  183 (290)
T ss_pred             chhhcccCc---CcHHHHHHhCC
Confidence            998753333   24666666654

>KOG2263|consensus

Probab=86.78  E-value=7.4  Score=38.69  Aligned_cols=128  Identities=20%  Similarity=0.279  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCC------------HHHHHHHHhcCC----CCeeeeeeeccCcHHhHHH
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG------------HPVVKCLRNKIP----KAFFETHMMVQNPQQWIEP   82 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g------------~~~v~~l~~~~~----~~~~d~Hlmv~~p~~~i~~   82 (277)
                      .+.+|++.|+++|+..+++|=--      +.-|            .+.+.++|=.-+    +-.++.|+-.+|....+..
T Consensus       587 aikDEV~DLEkaGikVIQiDE~A------LREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd~TQIHtH~CYSdfndi~~~  660 (765)
T KOG2263|consen  587 AIKDEVEDLEKAGIKVIQIDEAA------LREGLPLRKAEHSFYLDWAVHAFRITNSGVQDSTQIHTHMCYSDFNDIIHS  660 (765)
T ss_pred             HHHHHHHHHHHcCceEEEeChHH------HhcCCCcchhhHHHHHHHHHHHhhhccccccccchhhhhhhhhhccHHHHH
Confidence            46789999999999999988321      2222            233444441100    1245555555555555555


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI  162 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i  162 (277)
                      ..+..+|.+++..--                                             +-...+...++ |.+-|.+|
T Consensus       661 I~~mDADVitIEnSr---------------------------------------------sD~kllsvf~~-gvkY~~~I  694 (765)
T KOG2263|consen  661 IIDMDADVITIENSR---------------------------------------------SDEKLLSVFRE-GVKYGAGI  694 (765)
T ss_pred             HHhccCcEEEEecCc---------------------------------------------chHHHHHHHhc-cCcccCCc
Confidence            555555555332211                                             12344444443 56678888


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                      .||.=           |     --.|--|   -.++..++|..+.+.+|.-.+||
T Consensus       695 GpG~~-----------D-----IHSPRiP---s~dE~~erI~~~l~~~~~~~lWv  730 (765)
T KOG2263|consen  695 GPGVY-----------D-----IHSPRIP---STDEIAERINKMLAVLPQNILWV  730 (765)
T ss_pred             CCcee-----------c-----ccCCCCC---CHHHHHHHHHHHHHhcccccEEE
Confidence            88841           0     0135443   24577788888888888888887

>PRK07695 transcriptional regulator TenI; Provisional

Probab=86.68  E-value=11  Score=32.55  Aligned_cols=79  Identities=13%  Similarity=0.021  Sum_probs=49.3

Q ss_pred             HHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-c-CC--C----CCHHHHHHHHhhCCCcccc----hhhh
Q psy11600         55 VKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-E-PV--D----NVPQVIRQIKEAGMKVGQV----LQDW  122 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e-~~--d----~g~~~i~~i~~~~~~~~d~----p~~~  122 (277)
                      ++++|+.+|+..+-+  -+.+++ ++....+.|+|++.++. - ..  .    .+...++++++....|+-.    ..+-
T Consensus        86 ~~~~r~~~~~~~ig~--s~~s~e-~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~  162 (201)
T PRK07695         86 VRSVREKFPYLHVGY--SVHSLE-EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPEN  162 (201)
T ss_pred             HHHHHHhCCCCEEEE--eCCCHH-HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHH
Confidence            456676666655444  344444 56778889999997642 1 11  1    1667888887766555533    2334


Q ss_pred             hHHHHhcCCCeEEe
Q psy11600        123 IEPMADANVDQYTF  136 (277)
Q Consensus       123 i~~~~~~g~d~it~  136 (277)
                      +..+.++|++.+.+
T Consensus       163 ~~~~~~~Ga~gvav  176 (201)
T PRK07695        163 TRDVLAAGVSGIAV  176 (201)
T ss_pred             HHHHHHcCCCEEEE
Confidence            66777888888765

>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]

Probab=86.66  E-value=3.3  Score=39.01  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             eeeeeeec--cCcHH-hHHHHHhcCCCeEEEecc
Q psy11600         66 FFETHMMV--QNPQQ-WIEPMADANVDQYTFHVE   96 (277)
Q Consensus        66 ~~d~Hlmv--~~p~~-~i~~l~~ag~d~i~~H~e   96 (277)
                      .+++||.+  ..+.+ -++.|.+||.|-+-||..
T Consensus       110 ~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~  143 (353)
T COG2108         110 DFHIHLYTTGILATEEALKALAEAGLDEIRFHPP  143 (353)
T ss_pred             ceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence            48999998  44444 488999999999999985

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=86.60  E-value=20  Score=32.34  Aligned_cols=103  Identities=14%  Similarity=0.118  Sum_probs=67.8

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      +|-+......++|||.||+|.-.---  -.+-+..+++....++  ++  -+++++...+..++++|+=+|   ...++ 
T Consensus        22 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPE---kr~El-   97 (237)
T TIGR00559        22 DPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPE---ARDEV-   97 (237)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCC---CCCCc-
Confidence            56777888899999999999763211  4466788888765544  33  467888889999999999888   33221 


Q ss_pred             HHHHHhCCccceeeCCCCC---HHhHHHHHhhcCceEEEEecCC
Q psy11600        149 RQIKEAGMKVGLAIKPKTP---VDVIAEYIESADLVLIMTVEPG  189 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~---~~~i~~~i~~~d~vl~mav~Pg  189 (277)
                              .-.-|+.....   +..+...++..++..-+-++|.
T Consensus        98 --------TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~  133 (237)
T TIGR00559        98 --------TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD  133 (237)
T ss_pred             --------cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence                    01222222222   2334455677777777888885

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>KOG2550|consensus

Probab=86.56  E-value=3  Score=40.49  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=59.0

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      |.+.+++|=.-|..  .+.++.|.++|+|++=+|.--|+-+    |-.++++++|+.||++.+-..=-|  -.++.+.|.
T Consensus       239 qll~gAaiGTre~d--K~rl~ll~~aGvdvviLDSSqGnS~----~qiemik~iK~~yP~l~ViaGNVV--T~~qa~nLI  310 (503)
T KOG2550|consen  239 QLLCGAAIGTRDDD--KERLDLLVQAGVDVVILDSSQGNSI----YQLEMIKYIKETYPDLQIIAGNVV--TKEQAANLI  310 (503)
T ss_pred             ceeeeeccccccch--hHHHHHhhhcCCcEEEEecCCCcch----hHHHHHHHHHhhCCCceeecccee--eHHHHHHHH
Confidence            33444555444444  3577888999999999999999876    788999999999999765443333  234677899


Q ss_pred             hcCCCeE
Q psy11600         85 DANVDQY   91 (277)
Q Consensus        85 ~ag~d~i   91 (277)
                      ++|+|.+
T Consensus       311 ~aGaDgL  317 (503)
T KOG2550|consen  311 AAGADGL  317 (503)
T ss_pred             HccCcee
Confidence            9999998

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=86.26  E-value=7.8  Score=35.25  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=70.3

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEecc--cc---ccccCCCC-CHHHHHHHHhcC-CCCeeeeeeeccC-cHHhHHHHHhc
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVM--DG---TFVPNLTF-GHPVVKCLRNKI-PKAFFETHMMVQN-PQQWIEPMADA   86 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~Dim--Dg---~fvp~~~~-g~~~v~~l~~~~-~~~~~d~Hlmv~~-p~~~i~~l~~a   86 (277)
                      ++.....+-.+.|.++|+|+  +++-  .+   .+.....| ..+.++++++.. ++.++.++....+ ..+.++...+.
T Consensus        17 f~~~~~~~ia~~L~~~GVd~--IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~   94 (266)
T cd07944          17 FGDEFVKAIYRALAAAGIDY--VEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGS   94 (266)
T ss_pred             CCHHHHHHHHHHHHHCCCCE--EEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcC
Confidence            33444456677788899888  4442  11   12112223 257788887653 3566666554443 34568888889


Q ss_pred             CCCeEEEecc--CCCCCHHHHHHHHhhCCCcc----cc----h---hhhhHHHHhcCCCeEEe
Q psy11600         87 NVDQYTFHVE--PVDNVPQVIRQIKEAGMKVG----QV----L---QDWIEPMADANVDQYTF  136 (277)
Q Consensus        87 g~d~i~~H~e--~~d~g~~~i~~i~~~~~~~~----d~----p---~~~i~~~~~~g~d~it~  136 (277)
                      |++++.+=+.  ..+...+.++.+|+....+.    +.    |   .++++.+.++|++.|++
T Consensus        95 gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l  157 (266)
T cd07944          95 VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI  157 (266)
T ss_pred             CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            9998733222  22235667777777764321    11    3   44556778899999877

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=86.24  E-value=26  Score=31.84  Aligned_cols=167  Identities=18%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             cHHHHHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC--------c------HHhHHH
Q psy11600         19 NLHSESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN--------P------QQWIEP   82 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~--------p------~~~i~~   82 (277)
                      ++++. ...++.|+|.+.+  +...|-..|+    ..+++..++. .+  +-+|.|+.-        .      .+.++.
T Consensus        10 s~~~a-~~A~~~GAdRiELc~~L~~GGlTPS----~g~i~~~~~~-~~--ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~   81 (248)
T PRK11572         10 SMECA-LTAQQAGADRIELCAAPKEGGLTPS----LGVLKSVRER-VT--IPVHPIIRPRGGDFCYSDGEFAAMLEDIAT   81 (248)
T ss_pred             CHHHH-HHHHHcCCCEEEEccCcCCCCcCCC----HHHHHHHHHh-cC--CCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence            34444 4556789999765  4455777776    3458888864 44  557888852        1      124677


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHH-HhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM-ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA  161 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~-~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~  161 (277)
                      +.+.|+|-+-|=+=..++                .+..+..+.| ..++.--+|||--= +.+.+..+.+++        
T Consensus        82 ~~~~GadGvV~G~L~~dg----------------~vD~~~~~~Li~~a~~~~vTFHRAf-D~~~d~~~al~~--------  136 (248)
T PRK11572         82 VRELGFPGLVTGVLDVDG----------------HVDMPRMRKIMAAAGPLAVTFHRAF-DMCANPLNALKQ--------  136 (248)
T ss_pred             HHHcCCCEEEEeeECCCC----------------CcCHHHHHHHHHHhcCCceEEechh-hccCCHHHHHHH--------
Confidence            778888877442211121                0111222222 23344567888520 001111122221        


Q ss_pred             eCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCC
Q psy11600        162 IKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTG  235 (277)
Q Consensus       162 i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg  235 (277)
                                   +...++--++|-  |.  ..-..+-++.++++.++.....|..=|||+..|++++.+.|..
T Consensus       137 -------------l~~lG~~rILTS--Gg--~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~  193 (248)
T PRK11572        137 -------------LADLGVARILTS--GQ--QQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVR  193 (248)
T ss_pred             -------------HHHcCCCEEECC--CC--CCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence                         112233333331  21  1224555666777766656555888999999999998765544

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=85.98  E-value=19  Score=35.25  Aligned_cols=12  Identities=25%  Similarity=0.506  Sum_probs=10.1

Q ss_pred             CCeEEEeCCCCc
Q psy11600        258 TLNIEVDGGVGP  269 (277)
Q Consensus       258 ~~~I~VDGGI~~  269 (277)
                      ...|..||||..
T Consensus       327 ~vpviadGGi~~  338 (450)
T TIGR01302       327 GIPVIADGGIRY  338 (450)
T ss_pred             CCeEEEeCCCCC
Confidence            567999999985

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=85.97  E-value=21  Score=31.24  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=56.3

Q ss_pred             HHHHHHHcCCCEEEEeccccccccCCCCC---------HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         23 ESQNLLDSGADYLHLDVMDGTFVPNLTFG---------HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        23 ~~~~l~~~~~~~~h~DimDg~fvp~~~~g---------~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      ...+..+.|+|+  +||-=+..-|+.+.-         .++|+.+++.++++++.++-  .+|+-. +...++|++++  
T Consensus        24 ~a~~~~~~GAdi--IDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT--~~~~v~-~~aL~~g~~~i--   96 (210)
T PF00809_consen   24 RAREQVEAGADI--IDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT--FNPEVA-EAALKAGADII--   96 (210)
T ss_dssp             HHHHHHHTT-SE--EEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE--SSHHHH-HHHHHHTSSEE--
T ss_pred             HHHHHHHhcCCE--EEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC--CCHHHH-HHHHHcCcceE--
Confidence            455667789999  888655555554442         24556666534678877764  456544 44445599987  


Q ss_pred             eccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         94 HVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        94 H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                       .++..+-                .-...++..+++|+.+|.+|..
T Consensus        97 -nd~~~~~----------------~~~~~~~l~a~~~~~vV~m~~~  125 (210)
T PF00809_consen   97 -NDISGFE----------------DDPEMLPLAAEYGAPVVLMHSD  125 (210)
T ss_dssp             -EETTTTS----------------SSTTHHHHHHHHTSEEEEESES
T ss_pred             -Eeccccc----------------ccchhhhhhhcCCCEEEEEecc
Confidence             2332210                0134567778888888888876

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>PRK01207 methionine synthase; Provisional

Probab=85.79  E-value=26  Score=33.36  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHc------CCC-EEEEeccccccccCCCCCH----HHHHHHHhcCCCC--eeeeeeecc-CcHHhHHHHH
Q psy11600         19 NLHSESQNLLDS------GAD-YLHLDVMDGTFVPNLTFGH----PVVKCLRNKIPKA--FFETHMMVQ-NPQQWIEPMA   84 (277)
Q Consensus        19 ~l~~~~~~l~~~------~~~-~~h~DimDg~fvp~~~~g~----~~v~~l~~~~~~~--~~d~Hlmv~-~p~~~i~~l~   84 (277)
                      -|.+|++.|+++      |++ .+.+|==.      ++-++    ..++.++.....+  .+.+|+--. +....++.+.
T Consensus       153 al~~Ev~~L~~a~~~~~~G~~~~IQiDEPa------l~~~~~~l~~av~a~n~~~~gv~~~i~~H~C~g~~~~~i~~~i~  226 (343)
T PRK01207        153 IINEELKDIKSAWDRKSPGRKLEIQIDEPA------TTTHPDEMDIVVDSINKSVYGIDNEFSIHVCYSSDYRLLYDRIP  226 (343)
T ss_pred             HHHHHHHHHHhhhcccccCCceEEEEeCCC------cCCChHHHHHHHHHHHHHHhCCCCcEEEEEEcCCChHHHHHHHH
Confidence            467899999999      898 68888322      22222    2333444332222  455565555 5666788899


Q ss_pred             hcCCCeEEEeccCC
Q psy11600         85 DANVDQYTFHVEPV   98 (277)
Q Consensus        85 ~ag~d~i~~H~e~~   98 (277)
                      +..+|.+  .+|..
T Consensus       227 ~~~~d~~--~~E~a  238 (343)
T PRK01207        227 ELNIDGY--NLEYS  238 (343)
T ss_pred             hCCCCEE--EEEec
Confidence            9999998  44543

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=85.77  E-value=9.7  Score=35.23  Aligned_cols=128  Identities=14%  Similarity=0.116  Sum_probs=94.0

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMM   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlm   72 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.-+|=-|+..--++++.-+..  ++.+++                 +-.
T Consensus        76 PV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~  153 (284)
T PRK09195         76 PLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRF--DVSVEAELGRLGGQEDDLQVDEADAL  153 (284)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEecccCcccCccccccccc
Confidence            4456677775567777888889999999877777777877777777776653  333322                 233


Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..+|++-.+.+.+.|+|++.+=+-..-|        -.+.++.|++....|+-+      |++.+...++.|+.-|-+..
T Consensus       154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T  233 (284)
T PRK09195        154 YTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT  233 (284)
T ss_pred             CCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            5678887777778899999765544333        678999999987666532      99999999999999999976


Q ss_pred             C
Q psy11600        139 E  139 (277)
Q Consensus       139 E  139 (277)
                      |
T Consensus       234 ~  234 (284)
T PRK09195        234 E  234 (284)
T ss_pred             H
Confidence            5

>PLN02363 phosphoribosylanthranilate isomerase

Probab=85.64  E-value=28  Score=31.67  Aligned_cols=148  Identities=14%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCC----Ccc----c-chhhhhHHHHhcCCCeEEeecCCCCChH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGM----KVG----Q-VLQDWIEPMADANVDQYTFHVEPVDNVP  145 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~----~~~----d-~p~~~i~~~~~~g~d~it~H~E~~~~~~  145 (277)
                      +.++.+.++|+|++-|=+....   -.+...++|.+.-.    ..+    + .++..++...++|.|.+=+|-.   ...
T Consensus        58 eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~---e~~  134 (256)
T PLN02363         58 RDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGN---GSR  134 (256)
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCH
Confidence            3577788999999987543321   14555566655321    111    1 1677778888999999999964   333


Q ss_pred             HHHHHHHHhCCccceeeCCCCC---HHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKTP---VDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t~---~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                      ..++.++.. .+.=-+++....   ++.+.++ -..+|.+++=+- .|..|..|.-..+..    ..+.....+.+.||+
T Consensus       135 ~~~~~l~~~-~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~-~GGtG~t~DW~~l~~----~~~~~~~p~iLAGGL  208 (256)
T PLN02363        135 AAFSRLVRE-RKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSA-TGGSGKGFNWQNFKL----PSVRSRNGWLLAGGL  208 (256)
T ss_pred             HHHHHhhcC-CcEEEEEEECchHHHHHHHHhhccccCCEEEEeCC-CCCCCCccCHHHhcc----cccccCCCEEEECCC
Confidence            444444421 122223333222   1222221 123676664442 344455554322210    011122357899999


Q ss_pred             CcCcHHHHHH-ccC
Q psy11600        222 GPNTIDECAK-CLT  234 (277)
Q Consensus       222 ~~~tv~~~~~-~gp  234 (277)
                      +.+|+.+... .+|
T Consensus       209 ~peNV~~ai~~~~P  222 (256)
T PLN02363        209 TPENVHEAVSLLKP  222 (256)
T ss_pred             CHHHHHHHHHhcCC
Confidence            9999998764 566

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=85.48  E-value=9.4  Score=33.77  Aligned_cols=96  Identities=13%  Similarity=0.172  Sum_probs=57.1

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccCCCC---CHHHHHHHHhhC
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEPVDN---VPQVIRQIKEAG  112 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~~d~---g~~~i~~i~~~~  112 (277)
                      +|++||..|.-.. |-      ++.+..+. ..-....+|.+.++.+.+.|++++|+= +|...+   ...+|+++.+..
T Consensus         7 iDl~~g~~Vr~~~-G~------~~~~~~~~-~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~~   78 (221)
T TIGR00734         7 IDLKDGIAVAGKS-GE------RESYPPLE-SVSRLSSSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKRV   78 (221)
T ss_pred             EEeeCCEEEEccc-cC------cccccccc-cceecCCCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhhC
Confidence            7999999885321 11      11111110 223457899999999999999999321 233222   457788888764


Q ss_pred             CCcccc------hhhhhHHHHh--cCCCeEEeecCCCCC
Q psy11600        113 MKVGQV------LQDWIEPMAD--ANVDQYTFHVEPVDN  143 (277)
Q Consensus       113 ~~~~d~------p~~~i~~~~~--~g~d~it~H~E~~~~  143 (277)
                        |+.+      +++ ++.+..  .+|+.+.+-.++.++
T Consensus        79 --~v~vgGGirs~e~-~~~~~~~l~~a~rvvigT~a~~~  114 (221)
T TIGR00734        79 --ELIADCGVRSPED-LETLPFTLEFASRVVVATETLDI  114 (221)
T ss_pred             --cEEEcCccCCHHH-HHHHHhhhccceEEeecChhhCC
Confidence              4443      333 333322  359999998874333

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>TIGR00284 dihydropteroate synthase-related protein

Probab=85.46  E-value=42  Score=33.58  Aligned_cols=108  Identities=9%  Similarity=-0.004  Sum_probs=63.6

Q ss_pred             ceEeeeccccCcc-cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          6 CMIGPSILNSDLS-NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         6 ~~~~~s~~~~d~~-~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      ++|..-|..+-.. .+.+..+.+.+.|+|.  +||-=+...|+..-=.+.|+.+++. .+.+++++  +.+|.. ++...
T Consensus       152 ~~v~aEI~~a~~l~~i~~~A~~~~~~GADI--IDIG~~st~p~~~~v~~~V~~l~~~-~~~pISID--T~~~~v-~eaAL  225 (499)
T TIGR00284       152 LRVVAEIPPTVAEDGIEGLAARMERDGADM--VALGTGSFDDDPDVVKEKVKTALDA-LDSPVIAD--TPTLDE-LYEAL  225 (499)
T ss_pred             eEEEEEEcCCcchHHHHHHHHHHHHCCCCE--EEECCCcCCCcHHHHHHHHHHHHhh-CCCcEEEe--CCCHHH-HHHHH
Confidence            4454455433333 3456666677889999  8887555555322112567777764 46776665  345543 55566


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      ++|+++|-   ++..+.                 -+..++..+++|+..|.+|..
T Consensus       226 ~aGAdiIN---sVs~~~-----------------~d~~~~l~a~~g~~vVlm~~~  260 (499)
T TIGR00284       226 KAGASGVI---MPDVEN-----------------AVELASEKKLPEDAFVVVPGN  260 (499)
T ss_pred             HcCCCEEE---ECCccc-----------------hhHHHHHHHHcCCeEEEEcCC
Confidence            67999882   321110                 013345567789999999954

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=85.39  E-value=14  Score=34.85  Aligned_cols=118  Identities=15%  Similarity=0.191  Sum_probs=73.4

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEecc--c----cccccCCC-C-CHHHHHHHHhcCCCCeeeeeeec--cCcHHhHHHHHh
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVM--D----GTFVPNLT-F-GHPVVKCLRNKIPKAFFETHMMV--QNPQQWIEPMAD   85 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~Dim--D----g~fvp~~~-~-g~~~v~~l~~~~~~~~~d~Hlmv--~~p~~~i~~l~~   85 (277)
                      ......+-++.|.++|+++  +.+-  |    ..|..+++ + ..+.++++++..++..+-+.+.-  .+ .+.++...+
T Consensus        22 ~~~~~~~ia~~Ld~aGV~~--IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~   98 (333)
T TIGR03217        22 TIEQVRAIAAALDEAGVDA--IEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYD   98 (333)
T ss_pred             CHHHHHHHHHHHHHcCCCE--EEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHH
Confidence            3345556677888999988  4442  2    14442222 2 34677788776667666665532  23 356888899


Q ss_pred             cCCCeEEE--eccCCCCCHHHHHHHHhhCCCcc----cc----hh---hhhHHHHhcCCCeEEe
Q psy11600         86 ANVDQYTF--HVEPVDNVPQVIRQIKEAGMKVG----QV----LQ---DWIEPMADANVDQYTF  136 (277)
Q Consensus        86 ag~d~i~~--H~e~~d~g~~~i~~i~~~~~~~~----d~----p~---~~i~~~~~~g~d~it~  136 (277)
                      +|++++.+  |..-.+...+.++.+|+......    +.    |+   ++++.+.++|++.|++
T Consensus        99 ~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i  162 (333)
T TIGR03217        99 AGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI  162 (333)
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE
Confidence            99998853  32222346778888888875422    11    44   4456778889999877

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll

Probab=85.36  E-value=33  Score=32.24  Aligned_cols=172  Identities=19%  Similarity=0.233  Sum_probs=95.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEE-ec-----cc-----cccccCCCCCHHHHHHHHhcCCCCeeeeee-------
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHL-DV-----MD-----GTFVPNLTFGHPVVKCLRNKIPKAFFETHM-------   71 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-Di-----mD-----g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl-------   71 (277)
                      |.+...-...+.++++++.+.|+..+=+ =|     =|     ..+-|| +.=.+.++.+|+.+|++.+-++.       
T Consensus        43 PG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~-g~v~~air~iK~~~pdl~vi~Dvclc~YT~  121 (320)
T cd04824          43 PGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDED-GPVIQAIKLIREEFPELLIACDVCLCEYTS  121 (320)
T ss_pred             CCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCC-ChHHHHHHHHHHhCCCcEEEEeeeccCCCC
Confidence            5666666678999999999999998422 01     11     113333 22368999999999997665433       


Q ss_pred             ------ec-----cC------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhh---CCCcccc---------hhhh
Q psy11600         72 ------MV-----QN------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA---GMKVGQV---------LQDW  122 (277)
Q Consensus        72 ------mv-----~~------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~---~~~~~d~---------p~~~  122 (277)
                            .-     .|      +.+..-...++|||.+. ..|.|||-   |.+||+.   ...-.++         -..|
T Consensus       122 hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVA-PSdMMDGr---V~aIR~aLD~~G~~~~v~ImSYsaKyaS~f  197 (320)
T cd04824         122 HGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVA-PSDMMDGR---VRAIKQALIQAGLGNKVSVMSYSAKFASCL  197 (320)
T ss_pred             CCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEe-cccccccH---HHHHHHHHHHCCCccCCeeeehHHHhhhhc
Confidence                  21     11      12223334678999986 78889974   4445443   2220122         1223


Q ss_pred             hHHHHhcC------CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhh
Q psy11600        123 IEPMADAN------VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFM  196 (277)
Q Consensus       123 i~~~~~~g------~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~  196 (277)
                      -.+|.++-      .|.=|.+..    +.+--+.+++.                ..+.-+-+|++   -|.|+.+     
T Consensus       198 YGPFRdAa~Sap~~gDRksYQmd----p~n~~eAlre~----------------~~D~~EGAD~l---MVKPal~-----  249 (320)
T cd04824         198 YGPFRDAACSAPSFGDRRCYQLP----PGARGLALRAV----------------ERDVSEGADMI---MVKPGTP-----  249 (320)
T ss_pred             cchHHHHhcCCCCCCCccccCCC----CcCHHHHHHHH----------------HhhHHhCCCEE---EEcCCch-----
Confidence            34444331      244455543    22222233321                11223446664   4799875     


Q ss_pred             hhhhhhHHHHHhhCCCccEE
Q psy11600        197 QDMMPKVKWLRENYPTLNIE  216 (277)
Q Consensus       197 ~~~l~kI~~l~~~~~~~~i~  216 (277)
                        +|+-|+.+++..|++-+.
T Consensus       250 --YLDIi~~~k~~~~~~Pva  267 (320)
T cd04824         250 --YLDIVREAKDKHPDLPLA  267 (320)
T ss_pred             --HHHHHHHHHHhccCCCEE
Confidence              688888888877555443

This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=85.36  E-value=6  Score=36.73  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             HHcCCCEEEEeccccccccCC---CCC--HHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600         28 LDSGADYLHLDVMDGTFVPNL---TFG--HPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV  101 (277)
Q Consensus        28 ~~~~~~~~h~DimDg~fvp~~---~~g--~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g  101 (277)
                      ...|...--++.-|+..+..=   .+|  .+.++++|++.| ..++.  +-|.++ +++....++|+|.+  .+|-|+  
T Consensus       155 ~~GGG~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIe--VEv~tl-eea~~a~~agaDiI--mLDnms--  227 (290)
T PRK06559        155 RVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVE--VEVESL-AAAEEAAAAGADII--MLDNMS--  227 (290)
T ss_pred             HhcCCcccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEE--EECCCH-HHHHHHHHcCCCEE--EECCCC--
Confidence            334444333555554433221   134  477888888765 34433  345666 55666778999999  777655  


Q ss_pred             HHHHHHHHhhC--CCcccc----hhhhhHHHHhcCCCeEEee
Q psy11600        102 PQVIRQIKEAG--MKVGQV----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       102 ~~~i~~i~~~~--~~~~d~----p~~~i~~~~~~g~d~it~H  137 (277)
                      |+.++++-+.-  ...+.+    ..+-++.+++.|+|+|+.-
T Consensus       228 pe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~g  269 (290)
T PRK06559        228 LEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSG  269 (290)
T ss_pred             HHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence            56665554432  223333    6888999999999999974

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=85.32  E-value=25  Score=31.85  Aligned_cols=76  Identities=14%  Similarity=0.081  Sum_probs=40.2

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCC-CC------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE-eec
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPV-DN------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT-FHV  138 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~-d~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it-~H~  138 (277)
                      ..+.+..+.++|||+|=+=.+.. .+            -.++|+.+++..+.|+.+   -.+.++.-.++|+++|- +-.
T Consensus        26 ~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg  105 (257)
T cd00739          26 AVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEAGADIINDVSG  105 (257)
T ss_pred             HHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCC
Confidence            34456777889999992222222 11            223567777665555443   24455555666877765 333


Q ss_pred             CCCCCh-HHHHHHHHHh
Q psy11600        139 EPVDNV-PQVIRQIKEA  154 (277)
Q Consensus       139 E~~~~~-~~~~~~I~~~  154 (277)
                      +   .- ....+.+++.
T Consensus       106 ~---~~~~~~~~l~~~~  119 (257)
T cd00739         106 G---SDDPAMLEVAAEY  119 (257)
T ss_pred             C---CCChHHHHHHHHc
Confidence            3   11 3445555544

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=85.29  E-value=9.2  Score=33.67  Aligned_cols=117  Identities=9%  Similarity=-0.100  Sum_probs=68.7

Q ss_pred             ccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcC--CCCe--eeeee--------ecc-CcHH
Q psy11600         14 NSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKI--PKAF--FETHM--------MVQ-NPQQ   78 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~--~~~~--~d~Hl--------mv~-~p~~   78 (277)
                      ..+...+..+++.+.+.|++.  +|++.  +..-  -..-.+.++++++..  -+++  +++|+        ... ...+
T Consensus        72 ~~~~~~~~~~v~~a~~~Ga~~--v~~~~~~~~~~--~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~  147 (235)
T cd00958          72 DDNDKVLVASVEDAVRLGADA--VGVTVYVGSEE--EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAY  147 (235)
T ss_pred             CCCchhhhcCHHHHHHCCCCE--EEEEEecCCch--HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHH
Confidence            456667777889999999999  66655  3221  011112344444311  1333  34444        111 1111


Q ss_pred             hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc--------hh---hhhHHHHhcCCCeEEee
Q psy11600         79 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV--------LQ---DWIEPMADANVDQYTFH  137 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~--------p~---~~i~~~~~~g~d~it~H  137 (277)
                      ..+...++|+|++-+.+   .++.+.++++.+.+..|+-+        ++   +-++.+.++||+.+++-
T Consensus       148 ~~~~a~~~GaD~Ik~~~---~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg  214 (235)
T cd00958         148 AARIGAELGADIVKTKY---TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG  214 (235)
T ss_pred             HHHHHHHHCCCEEEecC---CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence            24447788999998753   33678888888877665532        22   34677889999988763

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=85.16  E-value=23  Score=32.74  Aligned_cols=72  Identities=17%  Similarity=0.093  Sum_probs=40.5

Q ss_pred             CCCeeeeeee--ccCcHHhHHHHHhcCCCeEEEeccCC-CC------------CHHHHHHHHhhCCCcccc---hhhhhH
Q psy11600         63 PKAFFETHMM--VQNPQQWIEPMADANVDQYTFHVEPV-DN------------VPQVIRQIKEAGMKVGQV---LQDWIE  124 (277)
Q Consensus        63 ~~~~~d~Hlm--v~~p~~~i~~l~~ag~d~i~~H~e~~-d~------------g~~~i~~i~~~~~~~~d~---p~~~i~  124 (277)
                      |+-+.|=...  .....+.+..+.+.|||+|=+=.++. .|            -..+|+.+++....++.+   -.+.++
T Consensus        25 pDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~  104 (282)
T PRK11613         25 PDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIR  104 (282)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHH
Confidence            4444444332  22334457777889999993333332 22            222556666544445544   455666


Q ss_pred             HHHhcCCCeE
Q psy11600        125 PMADANVDQY  134 (277)
Q Consensus       125 ~~~~~g~d~i  134 (277)
                      .-.++||++|
T Consensus       105 ~AL~~GadiI  114 (282)
T PRK11613        105 ESAKAGAHII  114 (282)
T ss_pred             HHHHcCCCEE
Confidence            6677899988

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=85.07  E-value=2.9  Score=39.66  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             HHHHHHHH--cCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCc--HHhHHHHHhcCCCeEEEe
Q psy11600         22 SESQNLLD--SGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNP--QQWIEPMADANVDQYTFH   94 (277)
Q Consensus        22 ~~~~~l~~--~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p--~~~i~~l~~ag~d~i~~H   94 (277)
                      +-++.|.+  .|+|++=+|+-.|+-.    +-.+.|+++|+.+|+++    ++..|-  .+..+.|.++|+|.+-+=
T Consensus       111 er~~~L~~~~~g~D~iviD~AhGhs~----~~i~~ik~ik~~~P~~~----vIaGNV~T~e~a~~Li~aGAD~vKVG  179 (346)
T PRK05096        111 EKTKQILALSPALNFICIDVANGYSE----HFVQFVAKAREAWPDKT----ICAGNVVTGEMVEELILSGADIVKVG  179 (346)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCcHH----HHHHHHHHHHHhCCCCc----EEEecccCHHHHHHHHHcCCCEEEEc
Confidence            34445555  5899999999999764    44578999999998865    444552  235778999999988433

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=85.06  E-value=7.2  Score=36.09  Aligned_cols=106  Identities=14%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccc--ccccc-CCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMD--GTFVP-NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp-~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      ++.+.+++.+.++..|+|.|=+=|=-  |.|-| +-.+.++.++++++. +++|+..|==..-|.+++++..+.|+--+-
T Consensus       154 ~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~-~~~PlVlHGgSGip~~eI~~aI~~GV~KvN  232 (286)
T COG0191         154 DLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEA-VSLPLVLHGGSGIPDEEIREAIKLGVAKVN  232 (286)
T ss_pred             hhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHhCceEEe
Confidence            47788999999999999998888877  77865 666889999999985 889999999999999999999999999885


Q ss_pred             EeccCCCCCHHHHHHHHhhCCC-c-ccchhhhhHH
Q psy11600         93 FHVEPVDNVPQVIRQIKEAGMK-V-GQVLQDWIEP  125 (277)
Q Consensus        93 ~H~e~~d~g~~~i~~i~~~~~~-~-~d~p~~~i~~  125 (277)
                      +.-|   .-.-+..++|+.-.. + .--|..|+..
T Consensus       233 i~Td---~~~A~~~avr~~~~~~~k~~DpR~~l~~  264 (286)
T COG0191         233 IDTD---LQLAFTAAVREYLAENPKEYDPRKYLKP  264 (286)
T ss_pred             eCcH---HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence            5533   233455666665321 1 1116666654

>cd00423 Pterin_binding Pterin binding enzymes

Probab=85.03  E-value=29  Score=31.28  Aligned_cols=100  Identities=17%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC-C--------HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF-G--------HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~-g--------~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      .|.....+..+.+.+.|+|.  +||==+..-|+-.. +        .+.|+.+++. ++.++  -+-+.+|+- ++...+
T Consensus        21 ~~~~~~~~~a~~~~~~GAdi--IDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~-~~~pi--SIDT~~~~v-~~aaL~   94 (258)
T cd00423          21 LSLDKALEHARRMVEEGADI--IDIGGESTRPGAEPVSVEEELERVIPVLRALAGE-PDVPI--SVDTFNAEV-AEAALK   94 (258)
T ss_pred             CCHHHHHHHHHHHHHCCCCE--EEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc-CCCeE--EEeCCcHHH-HHHHHH
Confidence            46666667777778889999  78764444454211 0        2456666653 45554  445556654 555566


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|+++|   .++.-+.              .  ....++..+++|+.+|.+|..
T Consensus        95 ~g~~iI---Ndis~~~--------------~--~~~~~~l~~~~~~~vV~m~~~  129 (258)
T cd00423          95 AGADII---NDVSGGR--------------G--DPEMAPLAAEYGAPVVLMHMD  129 (258)
T ss_pred             hCCCEE---EeCCCCC--------------C--ChHHHHHHHHcCCCEEEECcC
Confidence            788887   2322110              0  123456677889999999864

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.90  E-value=10  Score=35.05  Aligned_cols=128  Identities=13%  Similarity=0.165  Sum_probs=89.1

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee---------------eeecc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET---------------HMMVQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~---------------Hlmv~   74 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.=+|-.|+..--++++.-++.  ++++++               .-...
T Consensus        76 PV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~~T  153 (283)
T PRK07998         76 PVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSY--GVPVEAELGAILGKEDDHVSEADCKT  153 (283)
T ss_pred             CEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEeccCCCccccccccccccC
Confidence            3345566665556677777889999998765556656777666666665543  554422               12245


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC-------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN-------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++-.+.+.+.|+|++.+=+-..-|       -.+.++.|++.+..|+-+      |++.+...+++|+.-|.+..|
T Consensus       154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te  231 (283)
T PRK07998        154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASD  231 (283)
T ss_pred             CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHH
Confidence            78887877788999998655533222       367899998887666533      888899999999999999776

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=84.87  E-value=23  Score=35.33  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeee------eeeeccC-c--HHhHHHHHhc
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFE------THMMVQN-P--QQWIEPMADA   86 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d------~Hlmv~~-p--~~~i~~l~~a   86 (277)
                      ..+.+.++.+.+.+..++  =|.|  |.++--++.. ++++. +. +|+...|      |-.-+.. +  .+.++.+.++
T Consensus       178 ~sl~eAl~lm~e~~i~~L--PVVd~~g~liGIIT~~-DIl~~-~~-~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~a  252 (495)
T PTZ00314        178 ISLEEANEVLRESRKGKL--PIVNDNGELVALVSRS-DLKKN-RG-YPNASLDSNGQLLVGAAISTRPEDIERAAALIEA  252 (495)
T ss_pred             CCHHHHHHHHHHcCCCeE--EEEcCCCcEEEEEEeh-Hhhhc-cc-CchhhhccCCCEEEEEEECCCHHHHHHHHHHHHC
Confidence            466788888888877773  3454  4443223332 22222 21 3432222      3333332 2  2457778888


Q ss_pred             CCCeEEEeccCCC
Q psy11600         87 NVDQYTFHVEPVD   99 (277)
Q Consensus        87 g~d~i~~H~e~~d   99 (277)
                      |+|.+  |+|...
T Consensus       253 g~d~i--~id~a~  263 (495)
T PTZ00314        253 GVDVL--VVDSSQ  263 (495)
T ss_pred             CCCEE--EEecCC
Confidence            88888  666544

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=84.72  E-value=6.4  Score=35.53  Aligned_cols=92  Identities=18%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCC-CCCHHHHHHHHhcCCCCeeeeeeeccCcHHh----HHHHHh
Q psy11600         11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL-TFGHPVVKCLRNKIPKAFFETHMMVQNPQQW----IEPMAD   85 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~-~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~----i~~l~~   85 (277)
                      =|.+.|+.+.++.++.+++.+- +  +|..= .+-|.+ .||+.+++++++..  .++-++++..|..+.    .+.+.+
T Consensus        14 livaLD~~~~~~~~~~~~~~~~-~--~~~~K-vg~~l~~~~g~~~~~el~~~~--~~VflDlK~~DIpnT~~~~~~~~~~   87 (240)
T COG0284          14 LIVALDVPTEEEALAFVDKLGP-T--VDFVK-VGKPLVAFFGADILEELKARG--KKVFLDLKLADIPNTVALAAKAAAD   87 (240)
T ss_pred             eEEEECCCCHHHHHHHHHHhhc-c--ccEEE-EchHHHHhccHHHHHHHHHhC--CceEEeeecccchHHHHHHHHHhhh
Confidence            4788999999999888877632 2  44333 123333 46999999999863  378888999997664    555566


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      .|+|++|+|.   -+|.+.++.+++.
T Consensus        88 ~g~d~vtvH~---~~G~~~~~~~~e~  110 (240)
T COG0284          88 LGADAVTVHA---FGGFDMLRAAKEA  110 (240)
T ss_pred             cCCcEEEEeC---cCCHHHHHHHHHH
Confidence            7999999995   3466666666654

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=84.53  E-value=12  Score=33.63  Aligned_cols=119  Identities=17%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccC-------CCCCH----HHHHHHHhcC---CCCeeeee---eec--cCc
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-------LTFGH----PVVKCLRNKI---PKAFFETH---MMV--QNP   76 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-------~~~g~----~~v~~l~~~~---~~~~~d~H---lmv--~~p   76 (277)
                      |..+..+.++++.+.|++.+|+  -|+.+-+.       -.+.+    ..++..++..   +++++-+-   +.+  ...
T Consensus        82 ~~~~~~~~v~~~~~~G~~gv~i--ED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~  159 (243)
T cd00377          82 NALNVARTVRELEEAGAAGIHI--EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGL  159 (243)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEE--ecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCH
Confidence            4446777888999999999776  35444221       11121    2333333322   24444443   111  122


Q ss_pred             HH---hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc---hh---hhhHHHHhcCCCeEEeecC
Q psy11600         77 QQ---WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV---LQ---DWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        77 ~~---~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~---p~---~~i~~~~~~g~d~it~H~E  139 (277)
                      ++   -.+.+.++|||.+.+|.-.   ..+.++.+.+....|+.+   |.   .-.+.|.+.|+.+++++.-
T Consensus       160 ~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~  228 (243)
T cd00377         160 DEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLA  228 (243)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChH
Confidence            23   3666788999999766322   457777887776666644   32   3689999999999999763

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=84.50  E-value=2.8  Score=38.68  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             hhhhHHHHHhhCC-CccEEEeCCCCcCcHHHHH---HccCCCCCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHH
Q psy11600        199 MMPKVKWLRENYP-TLNIEVDGGVGPNTIDECA---KCLTGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       199 ~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~~---~~gpg~ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~  273 (277)
                      +.+.++.+++..+ ...|+|    .++|.+++.   ++|++.  =.+..-+.+.+++..+. .....|++-||||.+|++
T Consensus       179 i~~av~~~r~~~~~~~kIeV----Ev~slee~~ea~~~gaDi--ImLDn~s~e~l~~av~~~~~~~~leaSGgI~~~ni~  252 (281)
T PRK06543        179 LTEALRHVRAQLGHTTHVEV----EVDRLDQIEPVLAAGVDT--IMLDNFSLDDLREGVELVDGRAIVEASGNVNLNTVG  252 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEE----EeCCHHHHHHHHhcCCCE--EEECCCCHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence            4556777777765 233443    245665554   466653  11112234444544443 235679999999999998


Q ss_pred             Hhh
Q psy11600        274 ECA  276 (277)
Q Consensus       274 ~~~  276 (277)
                      +++
T Consensus       253 ~yA  255 (281)
T PRK06543        253 AIA  255 (281)
T ss_pred             HHH
Confidence            876

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=84.42  E-value=15  Score=32.76  Aligned_cols=116  Identities=10%  Similarity=0.085  Sum_probs=74.0

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+-.+.+++.|++++|+==.|..-- .-....+.++++++. .++|+.+-==+.++++ ++.+.+.|++.+.+--...
T Consensus        31 d~~~~a~~~~~~G~~~i~i~dl~~~~~-~~~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~-~~~~l~~Ga~~Viigt~~l  107 (253)
T PRK02083         31 DPVELAKRYNEEGADELVFLDITASSE-GRDTMLDVVERVAEQ-VFIPLTVGGGIRSVED-ARRLLRAGADKVSINSAAV  107 (253)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCcccc-cCcchHHHHHHHHHh-CCCCEEeeCCCCCHHH-HHHHHHcCCCEEEEChhHh
Confidence            455666677789999999733332211 113566889999886 5666555444555554 4455668999985543332


Q ss_pred             CCCHHHHHHHHhhCC---C--cccc-----------------------hhhhhHHHHhcCCCeEEeec
Q psy11600         99 DNVPQVIRQIKEAGM---K--VGQV-----------------------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        99 d~g~~~i~~i~~~~~---~--~~d~-----------------------p~~~i~~~~~~g~d~it~H~  138 (277)
                      . .|..++++.+.-.   .  -+|+                       +.++++.+.++|++.+++|.
T Consensus       108 ~-~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~  174 (253)
T PRK02083        108 A-NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTS  174 (253)
T ss_pred             h-CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcC
Confidence            2 5778888877531   1  1221                       46778889999999999874

>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR)

Probab=84.36  E-value=31  Score=31.20  Aligned_cols=155  Identities=13%  Similarity=0.095  Sum_probs=92.7

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-----cHHhHHHHHhcCCCeE
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-----PQQWIEPMADANVDQY   91 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~i~~l~~ag~d~i   91 (277)
                      ...+.+..+.+...+.|.  +.|-|+.--....-.....+.+++. .+++.-+|+-..+     ...++..+.++|++-+
T Consensus        14 ~~~l~~~~~~~~~~~~d~--v~Vt~~~~g~~~~~t~~~a~~l~~~-~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~i   90 (274)
T cd00537          14 EENLEAAADLLGALDPDF--VSVTDGAGGSTRDMTLLAAARILQE-GGIEPIPHLTCRDRNRIELQSILLGAHALGIRNI   90 (274)
T ss_pred             HHHHHHHHHHhhcCCCCE--EEeCCCCCCchhhhHHHHHHHHHHh-cCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeE
Confidence            345555556565555888  8888876633334455667778875 5788999999886     4445777888898855


Q ss_pred             EEe-ccCCC---------C----CHHHHHHHHhhC--CCcccc-------h--------hhhhHHHHhcCCCeEEeec--
Q psy11600         92 TFH-VEPVD---------N----VPQVIRQIKEAG--MKVGQV-------L--------QDWIEPMADANVDQYTFHV--  138 (277)
Q Consensus        92 ~~H-~e~~d---------~----g~~~i~~i~~~~--~~~~d~-------p--------~~~i~~~~~~g~d~it~H~--  138 (277)
                      -+= -|...         +    +.++|+.+++..  ...+-+       |        .++++.=.++||+++.=++  
T Consensus        91 L~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~f  170 (274)
T cd00537          91 LALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQLFF  170 (274)
T ss_pred             EEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeecccc
Confidence            322 22211         1    678899888753  111111       1        2455555788999776543  


Q ss_pred             --CCCCChHHHHHHHHHhC--CccceeeCCCCCHHhHHHHHhh
Q psy11600        139 --EPVDNVPQVIRQIKEAG--MKVGLAIKPKTPVDVIAEYIES  177 (277)
Q Consensus       139 --E~~~~~~~~~~~I~~~g--~~~g~~i~p~t~~~~i~~~i~~  177 (277)
                        +   ...+..+.+++.|  ...=.|+.|-++...+..+...
T Consensus       171 d~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~  210 (274)
T cd00537         171 DND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKL  210 (274)
T ss_pred             cHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHh
Confidence              3   3334445555554  3345566666666555554444

5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.33  E-value=14  Score=34.08  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=92.5

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee-----------------ee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH-----------------MM   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H-----------------lm   72 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.-+|=-|+..--++++.-+..  ++.+++=                 -.
T Consensus        76 PValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~--gvsVEaElG~vgg~e~~~~~~~~~~~  153 (284)
T PRK12857         76 PVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAV--GVSVEAELGKIGGTEDDITVDEREAA  153 (284)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEeeecCCccCCCCcccchhh
Confidence            4456667765556677777889999999877777777877777777776643  3333221                 12


Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeec
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..+|++-.+.+.+.|+|.+.+=+-..-|        -++.++.|++....|+-+      |++.+...+++|..-|-+..
T Consensus       154 ~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T  233 (284)
T PRK12857        154 MTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT  233 (284)
T ss_pred             cCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            4578877777778899999766544332        678999999987666532      89999999999999999987


Q ss_pred             C
Q psy11600        139 E  139 (277)
Q Consensus       139 E  139 (277)
                      |
T Consensus       234 ~  234 (284)
T PRK12857        234 N  234 (284)
T ss_pred             H
Confidence            6

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=84.29  E-value=6.4  Score=41.21  Aligned_cols=114  Identities=13%  Similarity=0.198  Sum_probs=70.7

Q ss_pred             HHHHHHHHHcCCCEEEEeccc----------------------cccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccC--
Q psy11600         21 HSESQNLLDSGADYLHLDVMD----------------------GTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQN--   75 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimD----------------------g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~--   75 (277)
                      .+..+++.++|.|.  |+|-=                      |.+-..+.|..++++.+|+.++ ++++-+-+-..+  
T Consensus       554 ~~aA~~a~~aGfDg--veih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~  631 (765)
T PRK08255        554 VAAARRAAEAGFDW--LELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWV  631 (765)
T ss_pred             HHHHHHHHHcCCCE--EEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccccc
Confidence            34556678889999  55532                      2222335566799999999874 567776655421  


Q ss_pred             -----cH---HhHHHHHhcCCCeEEEeccCC------C----CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCC
Q psy11600         76 -----PQ---QWIEPMADANVDQYTFHVEPV------D----NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANV  131 (277)
Q Consensus        76 -----p~---~~i~~l~~ag~d~i~~H~e~~------d----~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~  131 (277)
                           ++   +.++.+.++|+|++++|.-..      .    ......+.+|+..+.|+-.      |+.--+.+.+-++
T Consensus       632 ~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~  711 (765)
T PRK08255        632 EGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRA  711 (765)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCc
Confidence                 22   346778889999998883211      0    1234566777776655422      5554444555558


Q ss_pred             CeEEe
Q psy11600        132 DQYTF  136 (277)
Q Consensus       132 d~it~  136 (277)
                      |.|.+
T Consensus       712 D~v~~  716 (765)
T PRK08255        712 DLCAL  716 (765)
T ss_pred             ceeeE
Confidence            88887

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=84.24  E-value=2.3  Score=39.34  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=42.9

Q ss_pred             hhhhHHHHHhhCC---CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC-CCCeEEEeCCCCccCHHH
Q psy11600        199 MMPKVKWLRENYP---TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDE  274 (277)
Q Consensus       199 ~l~kI~~l~~~~~---~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~-~~~~I~VDGGI~~~~~~~  274 (277)
                      ..+.++.+++..+   ++.++++   +++-+.+..++|++.  =.+..-+.+.+++..+.. ....+++-||||.+|++.
T Consensus       180 i~~ai~~~r~~~~~~~kIeVEv~---tleea~ea~~~gaDi--I~LDn~s~e~l~~av~~~~~~~~leaSGGI~~~ni~~  254 (281)
T PRK06106        180 VREAIRRARAGVGHLVKIEVEVD---TLDQLEEALELGVDA--VLLDNMTPDTLREAVAIVAGRAITEASGRITPETAPA  254 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEeC---CHHHHHHHHHcCCCE--EEeCCCCHHHHHHHHHHhCCCceEEEECCCCHHHHHH
Confidence            3455677777665   3455543   333444445566663  111122345555554432 345699999999999998


Q ss_pred             hhC
Q psy11600        275 CAK  277 (277)
Q Consensus       275 ~~~  277 (277)
                      +++
T Consensus       255 yA~  257 (281)
T PRK06106        255 IAA  257 (281)
T ss_pred             HHh
Confidence            763

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=84.21  E-value=35  Score=31.62  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEecccccc--ccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTF--VPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANV   88 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~f--vp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~   88 (277)
                      .=+.|+..+..-++..++.+...+ +.+-.|+.  ...+.+-...++++.+... ++|+-+||==. -.+.+.+..++|.
T Consensus        23 fN~~n~e~~~avi~aAe~~~sPvI-lq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~Gf  100 (293)
T PRK07315         23 FNTNNLEWTQAILRAAEAKKAPVL-IQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGY  100 (293)
T ss_pred             EEECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCC
Confidence            333445555566777777777753 45545433  1111111344556665521 67999999877 4557888889999


Q ss_pred             CeEEEeccCCCC-CHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcc-ceeeCCCC
Q psy11600         89 DQYTFHVEPVDN-VPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-GLAIKPKT  166 (277)
Q Consensus        89 d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~-g~~i~p~t  166 (277)
                      +++  .+|.... -.+-++..|+           ..+.....|+   +|=.|    +..    +  .|..- -.+...-|
T Consensus       101 tSV--m~d~S~l~~eEni~~t~~-----------v~~~a~~~gv---~vE~E----lG~----i--~g~ed~~~g~s~~t  154 (293)
T PRK07315        101 TSI--MFDGSHLPVEENLKLAKE-----------VVEKAHAKGI---SVEAE----VGT----I--GGEEDGIIGKGELA  154 (293)
T ss_pred             CEE--EEcCCCCCHHHHHHHHHH-----------HHHHHHHcCC---EEEEe----cCc----c--cCcCccccCccCCC
Confidence            999  7776443 1112222211           1111222222   11111    000    0  00000 01111124


Q ss_pred             CHHhHHHHH-hhcCceEEEEecCC---CCC-chhhhhhhhhHHHHHhhCCCccEEEeCC--CCcCcHHHHHHccCCC---
Q psy11600        167 PVDVIAEYI-ESADLVLIMTVEPG---FGG-QKFMQDMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKCLTGF---  236 (277)
Q Consensus       167 ~~~~i~~~i-~~~d~vl~mav~Pg---t~g-q~~~~~~l~kI~~l~~~~~~~~i~vdGg--V~~~tv~~~~~~gpg~---  236 (277)
                      .++....+. ..+|++.+ ++-|-   +++ .+  .--++.++++++..+++-+++-||  ++.+.+.++.+.|..-   
T Consensus       155 ~peea~~f~~tgvD~LAv-~iG~vHG~y~t~~k--~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv  231 (293)
T PRK07315        155 PIEDAKAMVETGIDFLAA-GIGNIHGPYPENWE--GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNV  231 (293)
T ss_pred             CHHHHHHHHHcCCCEEee-ccccccccCCCCCC--cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence            454444443 23455332 21121   211 01  112445666666555577899999  9999999999998874   


Q ss_pred             CCcccccCHHHHHHHHHh
Q psy11600        237 GGQKFMQDMMPKVKWLRE  254 (277)
Q Consensus       237 ggq~F~~~~~~kI~~l~~  254 (277)
                      ++..+. +..+.++++.+
T Consensus       232 ~T~i~~-~~~~~~~~~~~  248 (293)
T PRK07315        232 NTECQI-AFANATRKFAR  248 (293)
T ss_pred             ccHHHH-HHHHHHHHHHH
Confidence            444333 56666666554

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=84.10  E-value=6.2  Score=34.75  Aligned_cols=68  Identities=9%  Similarity=0.043  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      ........+..|++++|++--+|..-   .-.++.++.+|+. +++|+-+---+.++++ ++.+.++|+|.+.
T Consensus       136 ~~~~a~aa~~~G~~~i~Le~~sGa~~---~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~-a~~l~~~GAD~VV  203 (205)
T TIGR01769       136 AAAYCLAAKYFGMKWVYLEAGSGASY---PVNPETISLVKKA-SGIPLIVGGGIRSPEI-AYEIVLAGADAIV  203 (205)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCCC---CCCHHHHHHHHHh-hCCCEEEeCCCCCHHH-HHHHHHcCCCEEE
Confidence            34445556778999999988888642   2458999999985 7899999999988875 4567778999874

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=84.08  E-value=6.4  Score=35.49  Aligned_cols=103  Identities=18%  Similarity=0.289  Sum_probs=67.5

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC---CC---CHHHHHHHHh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV---DN---VPQVIRQIKE  110 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~---d~---g~~~i~~i~~  110 (277)
                      +||-||..|+...|-     .+|            -+.+|-+..+.+.+.|+|-+.| +|+.   ++   -.++|+..-+
T Consensus        10 LDVk~GrVVKGv~F~-----~lr------------d~GDpVelA~~Y~e~GADElvF-lDItAs~~gr~~~~~vv~r~A~   71 (256)
T COG0107          10 LDVKDGRVVKGVNFK-----NLR------------DAGDPVELAKRYNEEGADELVF-LDITASSEGRETMLDVVERVAE   71 (256)
T ss_pred             EEccCCEEEeccccc-----chh------------hcCChHHHHHHHHHcCCCeEEE-EecccccccchhHHHHHHHHHh
Confidence            677899999876651     223            3579999999999999998764 4543   22   3344444444


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK  157 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~  157 (277)
                      ....|+-+     -.+-++.+..+|||-||+..-+..+++-+.+.-+..|.+
T Consensus        72 ~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQ  123 (256)
T COG0107          72 QVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQ  123 (256)
T ss_pred             hceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCc
Confidence            45556655     345567888999999999876444444333444445544

>PLN02591 tryptophan synthase

Probab=83.99  E-value=27  Score=31.62  Aligned_cols=107  Identities=21%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhCCccceeeCCCCCHHhHHHH---HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEe-CC
Q psy11600        145 PQVIRQIKEAGMKVGLAIKPKTPVDVIAEY---IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVD-GG  220 (277)
Q Consensus       145 ~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~---i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vd-Gg  220 (277)
                      ++..+.+++.|  ..--|-|..|+++..++   ++..++-++..+.|.|+        -++++.+.+..+.+-..|- .|
T Consensus        96 ~~F~~~~~~aG--v~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~--------~~ri~~ia~~~~gFIY~Vs~~G  165 (250)
T PLN02591         96 DKFMATIKEAG--VHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP--------TERMKAIAEASEGFVYLVSSTG  165 (250)
T ss_pred             HHHHHHHHHcC--CCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHhCCCcEEEeeCCC
Confidence            34566666666  33456688998766555   46778888888889886        2456677666666544431 23


Q ss_pred             CCcCcHHHHHHccCCCCC-cccccCHHHHHHHHHhhCCCCeEEEeCCCC-ccCHHHhh
Q psy11600        221 VGPNTIDECAKCLTGFGG-QKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECA  276 (277)
Q Consensus       221 V~~~tv~~~~~~gpg~gg-q~F~~~~~~kI~~l~~~~~~~~I~VDGGI~-~~~~~~~~  276 (277)
                      ++              |. ..+.++..+.++++|+. .+.-+.|--||+ +++++++.
T Consensus       166 vT--------------G~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~  208 (250)
T PLN02591        166 VT--------------GARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIA  208 (250)
T ss_pred             Cc--------------CCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHH
Confidence            32              22 23334555568888875 467788988999 78887764

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=83.96  E-value=11  Score=33.35  Aligned_cols=136  Identities=19%  Similarity=0.217  Sum_probs=69.7

Q ss_pred             hHHHHhcCCCeEEeecCCCC----ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc--CceEEEEecCCCCCchhh
Q psy11600        123 IEPMADANVDQYTFHVEPVD----NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMTVEPGFGGQKFM  196 (277)
Q Consensus       123 i~~~~~~g~d~it~H~E~~~----~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~--d~vl~mav~Pgt~gq~~~  196 (277)
                      +....++|||++-|=.++-.    ++....++........-+|+-...+++.+...+...  |.+.+..-++        
T Consensus        15 a~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~--------   86 (208)
T COG0135          15 AKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDED--------   86 (208)
T ss_pred             HHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCC--------
Confidence            45678899999988765311    122333333333212357777777888888887765  5555443222        


Q ss_pred             hhhhhhHHHHHhhCCCccEE----EeCCCCcCcHHH--------HHHc----cCCCCCcccccCHHHHHHHHHhhCCCCe
Q psy11600        197 QDMMPKVKWLRENYPTLNIE----VDGGVGPNTIDE--------CAKC----LTGFGGQKFMQDMMPKVKWLRENYPTLN  260 (277)
Q Consensus       197 ~~~l~kI~~l~~~~~~~~i~----vdGgV~~~tv~~--------~~~~----gpg~ggq~F~~~~~~kI~~l~~~~~~~~  260 (277)
                         .+.+++++..+ ++.++    +..+-..+....        +..+    .+|..|+.|.=+.+.+.      .....
T Consensus        87 ---~~~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~  156 (208)
T COG0135          87 ---PEYIDQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKP  156 (208)
T ss_pred             ---HHHHHHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCC
Confidence               23344444432 11111    111000000000        1112    14556788875544333      22334


Q ss_pred             EEEeCCCCccCHHHhh
Q psy11600        261 IEVDGGVGPNTIDECA  276 (277)
Q Consensus       261 I~VDGGI~~~~~~~~~  276 (277)
                      +..-||+|++|+.+..
T Consensus       157 ~~LAGGL~p~NV~~ai  172 (208)
T COG0135         157 VMLAGGLNPDNVAEAI  172 (208)
T ss_pred             EEEECCCCHHHHHHHH
Confidence            8889999999998765

>cd00423 Pterin_binding Pterin binding enzymes

Probab=83.94  E-value=24  Score=31.79  Aligned_cols=57  Identities=18%  Similarity=0.103  Sum_probs=29.6

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC-C------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeE
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD-N------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQY  134 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d-~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~i  134 (277)
                      +.+..+.+.|||+|-+=.+... +            -.++|+.+++.++.++.+   -.+.++.-.++|+++|
T Consensus        28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iI  100 (258)
T cd00423          28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADII  100 (258)
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEE
Confidence            3466778899999944344331 1            224555555544444332   2334444445555544

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=83.91  E-value=11  Score=35.70  Aligned_cols=114  Identities=16%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             HHHHHHHHHcCCCEEEEeccccc------c-cc--C-------------CCCCHHHHHHHHhcCC-CCeeeeeeecc---
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGT------F-VP--N-------------LTFGHPVVKCLRNKIP-KAFFETHMMVQ---   74 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~------f-vp--~-------------~~~g~~~v~~l~~~~~-~~~~d~Hlmv~---   74 (277)
                      .+..+++.++|.|.  |+|.=++      | .|  |             ..|-.++++.+|+.++ +.++-+-|-..   
T Consensus       140 ~~aA~~a~~aGfDg--Veih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~  217 (353)
T cd02930         140 ARCAALAREAGYDG--VEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV  217 (353)
T ss_pred             HHHHHHHHHcCCCE--EEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence            34555678889999  6664321      2 12  2             4566789999999864 44554333211   


Q ss_pred             ----CcH---HhHHHHHhcCCCeEEE----eccCC--C---C----CHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600         75 ----NPQ---QWIEPMADANVDQYTF----HVEPV--D---N----VPQVIRQIKEAGMKVGQV------LQDWIEPMAD  128 (277)
Q Consensus        75 ----~p~---~~i~~l~~ag~d~i~~----H~e~~--d---~----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~  128 (277)
                          +++   +.++.+.++|+|++++    |-+..  .   .    -....+++|+.+..|+-.      |+..-+.+.+
T Consensus       218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~  297 (353)
T cd02930         218 EGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLAD  297 (353)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHC
Confidence                223   3577888899999966    21111  0   0    133467788887766533      5555555555


Q ss_pred             cCCCeEEe
Q psy11600        129 ANVDQYTF  136 (277)
Q Consensus       129 ~g~d~it~  136 (277)
                      -++|.|.+
T Consensus       298 g~~D~V~~  305 (353)
T cd02930         298 GDADMVSM  305 (353)
T ss_pred             CCCChhHh
Confidence            55887766

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=83.86  E-value=6.6  Score=38.50  Aligned_cols=92  Identities=11%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             ccCcccHHHHHHHHHHcCCCEEEEeccccccc--cCCCCC---HHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHHH
Q psy11600         14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFV--PNLTFG---HPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPMA   84 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv--p~~~~g---~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l~   84 (277)
                      +-+..++-+|++.+.+.|+..+.+  .|.++.  .+-.++   .+.++.+.+..+  .+.+.+++.+|    .+.++.+.
T Consensus       177 sr~~e~Vv~Ei~~l~~~G~~ei~l--~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~--~~rir~~~~~p~~l~~ell~~~~  252 (445)
T PRK14340        177 SHPFASVLDEVRALAEAGYREITL--LGQNVNSYSDPEAGADFAGLLDAVSRAAP--EMRIRFTTSHPKDISESLVRTIA  252 (445)
T ss_pred             CCCHHHHHHHHHHHHHCCCeEEEE--eecccchhhccCCCchHHHHHHHHhhcCC--CcEEEEccCChhhcCHHHHHHHH
Confidence            445567778999999989887554  322111  110111   356666665322  34677777776    34577777


Q ss_pred             hc--CCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         85 DA--NVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        85 ~a--g~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      ++  |+.++  |+-.-.|...+++.+++.
T Consensus       253 ~~~~g~~~l--~iglQSgsd~vLk~m~R~  279 (445)
T PRK14340        253 ARPNICNHI--HLPVQSGSSRMLRRMNRG  279 (445)
T ss_pred             hCCCCCCeE--EECCCcCCHHHHHhcCCC
Confidence            75  68888  555555667888887664

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=83.82  E-value=7.2  Score=34.34  Aligned_cols=89  Identities=20%  Similarity=0.087  Sum_probs=57.7

Q ss_pred             ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCC---c--
Q psy11600         45 VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMK---V--  115 (277)
Q Consensus        45 vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~---~--  115 (277)
                      +|.-.-|.+.++.|++.  ++++-+-. |-++. +.....++|+++++..+.-++.    |..+++++.+....   +  
T Consensus        84 IP~T~~gl~ai~~L~~~--gi~v~~T~-V~s~~-Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tk  159 (211)
T cd00956          84 IPVTEDGLKAIKKLSEE--GIKTNVTA-IFSAA-QALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTK  159 (211)
T ss_pred             EcCcHhHHHHHHHHHHc--CCceeeEE-ecCHH-HHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCce
Confidence            45545688888888874  55554433 33444 4445678999999999876432    66777777665321   1  


Q ss_pred             ccc-----hhhhhHHHHhcCCCeEEeec
Q psy11600        116 GQV-----LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus       116 ~d~-----p~~~i~~~~~~g~d~it~H~  138 (277)
                      +..     |.++.. ..++|||.+|+.+
T Consensus       160 il~As~r~~~ei~~-a~~~Gad~vTv~~  186 (211)
T cd00956         160 ILAASIRNPQHVIE-AALAGADAITLPP  186 (211)
T ss_pred             EEecccCCHHHHHH-HHHcCCCEEEeCH
Confidence            111     666665 6789999999854

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=83.56  E-value=3.2  Score=35.96  Aligned_cols=137  Identities=20%  Similarity=0.267  Sum_probs=65.6

Q ss_pred             hHHHHhcCCCeEEeecCCCC----ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc--CceEEEEecCCCCCchhh
Q psy11600        123 IEPMADANVDQYTFHVEPVD----NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMTVEPGFGGQKFM  196 (277)
Q Consensus       123 i~~~~~~g~d~it~H~E~~~----~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~--d~vl~mav~Pgt~gq~~~  196 (277)
                      +....++|+|++.|-..|..    ++....++.+... ..-+|+-...+++.+...+...  |++.+..-.+        
T Consensus        12 a~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e~--------   82 (197)
T PF00697_consen   12 ARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQLHGDES--------   82 (197)
T ss_dssp             HHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG---------
T ss_pred             HHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCCC--------
Confidence            45678899999999877532    1112222222222 2367777788888888888765  7766554332        


Q ss_pred             hhhhhhHHHHHhhCCCc-cEEEeCCCCcCcHHHHHH----------ccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeC
Q psy11600        197 QDMMPKVKWLRENYPTL-NIEVDGGVGPNTIDECAK----------CLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDG  265 (277)
Q Consensus       197 ~~~l~kI~~l~~~~~~~-~i~vdGgV~~~tv~~~~~----------~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDG  265 (277)
                      .+   .++.++...+-+ .+.+...+.  ....+..          .+.|..|..|.-+.+.++.+...   ...+.+-|
T Consensus        83 ~e---~~~~l~~~~~vi~~~~v~~~~~--~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~~~~~~~~---~~p~iLAG  154 (197)
T PF00697_consen   83 PE---YIKLLRAGLPVIKAIHVDKDID--LLDYLERYESVDYFLLDSGSGGTGKTFDWSLLKKIVESYS---PKPVILAG  154 (197)
T ss_dssp             HH---HHHHHHTTSEEEEEEEESSCHS--CCHHCHCSTT-SEEEEESSSTSSSS---GGGGCCCHHT-G---TSTEEEES
T ss_pred             HH---HHHHhhcCceEEEEEEeCCccc--hHHHHHhcccccEEeEccCCCcCCcccCHHHhhhhhhhcc---cCcEEEEc
Confidence            11   222232111111 111211111  1111111          13444577887766655554322   45689999


Q ss_pred             CCCccCHHHhh
Q psy11600        266 GVGPNTIDECA  276 (277)
Q Consensus       266 GI~~~~~~~~~  276 (277)
                      |+|++|++++.
T Consensus       155 Gl~p~NV~~ai  165 (197)
T PF00697_consen  155 GLNPENVREAI  165 (197)
T ss_dssp             S--TTTHHHHH
T ss_pred             CCChHHHHHHH
Confidence            99999998764

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=83.55  E-value=38  Score=31.79  Aligned_cols=139  Identities=12%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             hHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCH---HhHHHHHhhcCceEEEEecCCCCCchhhhhh
Q psy11600        123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPV---DVIAEYIESADLVLIMTVEPGFGGQKFMQDM  199 (277)
Q Consensus       123 i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~---~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~  199 (277)
                      ...++++|.=-+ +|.+  .++++..+.+++......++...++..   +.+...++ .+. -++.++...+. +  +..
T Consensus        51 a~ava~~GglGv-i~~~--~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~e-agv-~~I~vd~~~G~-~--~~~  122 (325)
T cd00381          51 AIAMARLGGIGV-IHRN--MSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVE-AGV-DVIVIDSAHGH-S--VYV  122 (325)
T ss_pred             HHHHHHCCCEEE-EeCC--CCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHh-cCC-CEEEEECCCCC-c--HHH
Confidence            345566665322 2332  144555556665533334444444432   22333333 332 22334443321 1  345


Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---C---Cccc--------ccCHHHHHHHHHhhC--CCCeEEE
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---G---GQKF--------MQDMMPKVKWLRENY--PTLNIEV  263 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---g---gq~F--------~~~~~~kI~~l~~~~--~~~~I~V  263 (277)
                      .+.++++++..|++.+.+-...+.+.+..+.++|+++   |   |...        ....+.-+.++.+..  .+..+-.
T Consensus       123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA  202 (325)
T cd00381         123 IEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIA  202 (325)
T ss_pred             HHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEe
Confidence            6667788877776666552233446677788888886   1   1111        112333334433321  1456889


Q ss_pred             eCCCCc
Q psy11600        264 DGGVGP  269 (277)
Q Consensus       264 DGGI~~  269 (277)
                      ||||+.
T Consensus       203 ~GGI~~  208 (325)
T cd00381         203 DGGIRT  208 (325)
T ss_pred             cCCCCC
Confidence            999985

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=83.53  E-value=8.3  Score=35.84  Aligned_cols=110  Identities=10%  Similarity=0.087  Sum_probs=69.2

Q ss_pred             HHHcCCCEEEEeccccccccCCCCCHHHHHH-HHhcCCCCeeeeeeeccCcHHhH---HHHHhcCCCeEEEeccCC----
Q psy11600         27 LLDSGADYLHLDVMDGTFVPNLTFGHPVVKC-LRNKIPKAFFETHMMVQNPQQWI---EPMADANVDQYTFHVEPV----   98 (277)
Q Consensus        27 l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~-l~~~~~~~~~d~Hlmv~~p~~~i---~~l~~ag~d~i~~H~e~~----   98 (277)
                      +.+.|++.++---+-   ...+....+..+. +...-.+.|+-+-|+-.+|+++.   +.+.++|+|.|-+|.-.-    
T Consensus        27 ~~~~g~~~~~temi~---~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~  103 (319)
T TIGR00737        27 VAEYGAGLTVCEMVS---SEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKI  103 (319)
T ss_pred             HHHHCCCEEEECCEE---EhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHh
Confidence            455677765543322   2223333322322 33222367899999999998874   445678999998886532    


Q ss_pred             -C--CC----------HHHHHHHHhhCCCcccc------------hhhhhHHHHhcCCCeEEeecC
Q psy11600         99 -D--NV----------PQVIRQIKEAGMKVGQV------------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        99 -d--~g----------~~~i~~i~~~~~~~~d~------------p~~~i~~~~~~g~d~it~H~E  139 (277)
                       +  +|          -++++++|+.+..|+.+            ..++++.+.++|+|.+++|.-
T Consensus       104 ~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r  169 (319)
T TIGR00737       104 TKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGR  169 (319)
T ss_pred             cCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcc
Confidence             1  12          35677888776655543            346778889999999999964

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=83.53  E-value=2.8  Score=36.92  Aligned_cols=75  Identities=21%  Similarity=0.302  Sum_probs=51.7

Q ss_pred             cccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCC
Q psy11600         13 LNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANV   88 (277)
Q Consensus        13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~   88 (277)
                      -..++..+.+..+.+.+.|+|.  +=+.|  |...|+-.  .+.++.+|+.+|++++.+|.=-..-......  ..++|+
T Consensus       132 ~~~~~~~~~~~~~~~~~~g~~~--i~l~Dt~G~~~P~~v--~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa  207 (237)
T PF00682_consen  132 SRTDPEELLELAEALAEAGADI--IYLADTVGIMTPEDV--AELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGA  207 (237)
T ss_dssp             GGSSHHHHHHHHHHHHHHT-SE--EEEEETTS-S-HHHH--HHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred             ccccHHHHHHHHHHHHHcCCeE--EEeeCccCCcCHHHH--HHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCC
Confidence            3456677888888999999999  55666  77777632  2789999999998999999987553333222  346899


Q ss_pred             CeE
Q psy11600         89 DQY   91 (277)
Q Consensus        89 d~i   91 (277)
                      +++
T Consensus       208 ~~i  210 (237)
T PF00682_consen  208 DRI  210 (237)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            998

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=83.41  E-value=7.4  Score=34.74  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=47.7

Q ss_pred             CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH
Q psy11600          4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM   83 (277)
Q Consensus         4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l   83 (277)
                      +.+++.+..   | .+..+-.+.+++.|+|.+|+|-+....    ....+.+++++   +++|+-.-=-+.++++..+.+
T Consensus       142 VsvKir~g~---~-~~~~~la~~l~~aG~d~ihv~~~~~g~----~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l  210 (233)
T cd02911         142 VSVKIRAGV---D-VDDEELARLIEKAGADIIHVDAMDPGN----HADLKKIRDIS---TELFIIGNNSVTTIESAKEMF  210 (233)
T ss_pred             EEEEEcCCc---C-cCHHHHHHHHHHhCCCEEEECcCCCCC----CCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHH
Confidence            344555542   2 345556677889999999998765321    22346666665   466765544455666666655


Q ss_pred             HhcCCCeEE
Q psy11600         84 ADANVDQYT   92 (277)
Q Consensus        84 ~~ag~d~i~   92 (277)
                       +.|+|.+.
T Consensus       211 -~~GaD~Vm  218 (233)
T cd02911         211 -SYGADMVS  218 (233)
T ss_pred             -HcCCCEEE
Confidence             48999883

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=83.37  E-value=27  Score=31.89  Aligned_cols=57  Identities=12%  Similarity=0.031  Sum_probs=40.2

Q ss_pred             CCCHHHH-------HHHHhcCCCCeeeeeeeccCcHH----hHHHHH-hcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         49 TFGHPVV-------KCLRNKIPKAFFETHMMVQNPQQ----WIEPMA-DANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        49 ~~g~~~v-------~~l~~~~~~~~~d~Hlmv~~p~~----~i~~l~-~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      .+|++.+       +.+++.  ++++-.+++-.|..+    |.+.+. ..|+|.+|+|.   -+|.+.++...+
T Consensus        66 ~~G~~gi~~l~~~~~~~~~~--g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~---~~G~d~l~~~~~  134 (261)
T TIGR02127        66 RFGSEGFKALEEVIAHARSL--GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSP---YLGLDSLRPFLE  134 (261)
T ss_pred             hcCHHHHHHHHHHHHHHHHC--CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECC---cCCHHHHHHHHH
Confidence            3588888       555543  678899999999764    555655 67899999995   445666655443

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=83.36  E-value=10  Score=35.57  Aligned_cols=126  Identities=14%  Similarity=0.099  Sum_probs=72.2

Q ss_pred             ceEeeeccccC-------cccHHHHHHHHHHcCCCEEEEeccccccccCCC---------CCHHHHHHHHhcCC----CC
Q psy11600          6 CMIGPSILNSD-------LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---------FGHPVVKCLRNKIP----KA   65 (277)
Q Consensus         6 ~~~~~s~~~~d-------~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---------~g~~~v~~l~~~~~----~~   65 (277)
                      .-+..||..-+       +.++.+.++.+.. ++|++=+.+    .+||..         .=.++++++|+...    ++
T Consensus       129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~----scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~  203 (327)
T cd04738         129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNV----SSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKV  203 (327)
T ss_pred             CeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCCEEEEEC----CCCCCCccccccCHHHHHHHHHHHHHHHhhcccCC
Confidence            34677886555       3344455555544 366633333    355532         11267788887632    37


Q ss_pred             eeeeeeecc----CcHHhHHHHHhcCCCeEEEeccCC-------------C-C--C-------HHHHHHHHhhC--CCcc
Q psy11600         66 FFETHMMVQ----NPQQWIEPMADANVDQYTFHVEPV-------------D-N--V-------PQVIRQIKEAG--MKVG  116 (277)
Q Consensus        66 ~~d~Hlmv~----~p~~~i~~l~~ag~d~i~~H~e~~-------------d-~--g-------~~~i~~i~~~~--~~~~  116 (277)
                      |+.+=|--.    +..+..+.+.++|+|.+++|--..             . |  |       .+.++++++..  ..++
T Consensus       204 Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipI  283 (327)
T cd04738         204 PLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPI  283 (327)
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcE
Confidence            777766422    234456778889999999885321             0 1  2       35666776665  3333


Q ss_pred             cc------hhhhhHHHHhcCCCeEEee
Q psy11600        117 QV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       117 d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      -.      +++..+.+. +|||.+-+.
T Consensus       284 i~~GGI~t~~da~e~l~-aGAd~V~vg  309 (327)
T cd04738         284 IGVGGISSGEDAYEKIR-AGASLVQLY  309 (327)
T ss_pred             EEECCCCCHHHHHHHHH-cCCCHHhcc
Confidence            21      666666654 888877765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=83.33  E-value=18  Score=31.66  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV  101 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g  101 (277)
                      ++.+...++|+++        -..|+  |.+++++.-+++  ++++--..|  .|.+.. ...++|++.+=+-.-..-||
T Consensus        71 e~a~~a~~aGA~F--------ivSP~--~~~~v~~~~~~~--~i~~iPG~~--TptEi~-~A~~~G~~~vK~FPA~~~GG  135 (196)
T PF01081_consen   71 EQAEAAIAAGAQF--------IVSPG--FDPEVIEYAREY--GIPYIPGVM--TPTEIM-QALEAGADIVKLFPAGALGG  135 (196)
T ss_dssp             HHHHHHHHHT-SE--------EEESS----HHHHHHHHHH--TSEEEEEES--SHHHHH-HHHHTT-SEEEETTTTTTTH
T ss_pred             HHHHHHHHcCCCE--------EECCC--CCHHHHHHHHHc--CCcccCCcC--CHHHHH-HHHHCCCCEEEEecchhcCc
Confidence            5777788889998        56787  899999998875  777777665  466544 55678999995554434457


Q ss_pred             HHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600        102 PQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       102 ~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H  137 (277)
                      +..+|+++..-...--+     ..+=+..+.++|+..+..-
T Consensus       136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~G  176 (196)
T PF01081_consen  136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGG  176 (196)
T ss_dssp             HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEE
T ss_pred             HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEEC
Confidence            99999998754321112     3445666677776666554

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=83.23  E-value=26  Score=31.20  Aligned_cols=109  Identities=14%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC-Ceeeeeeecc-------------CcHHhHHHHHhc
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK-AFFETHMMVQ-------------NPQQWIEPMADA   86 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~-~~~d~Hlmv~-------------~p~~~i~~l~~a   86 (277)
                      .++++++.+.|++.+   |..+....    .|++++++.+.|++ +-+.+...-.             +|.++++.+.+.
T Consensus        88 ~e~v~~~l~~Ga~kv---vigt~a~~----~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~  160 (234)
T PRK13587         88 KSQIMDYFAAGINYC---IVGTKGIQ----DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI  160 (234)
T ss_pred             HHHHHHHHHCCCCEE---EECchHhc----CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc
Confidence            356777778899993   44333332    57889999988864 3344443221             257789999999


Q ss_pred             CCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600         87 NVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        87 g~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~  136 (277)
                      |+..+.+---..||     ..++++++++.+..|+.+     -.+-+..+.+.|++.+.+
T Consensus       161 g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv  220 (234)
T PRK13587        161 PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII  220 (234)
T ss_pred             CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            98764322111233     466788888877666654     233344444678887776

>TIGR00190 thiC thiamine biosynthesis protein ThiC

Probab=83.22  E-value=12  Score=36.26  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             ccCcHHhHHHH---HhcCCCeEEEeccCCCCCHHHHHHHHhh----CCCcc-----------------cc-hhhhh---H
Q psy11600         73 VQNPQQWIEPM---ADANVDQYTFHVEPVDNVPQVIRQIKEA----GMKVG-----------------QV-LQDWI---E  124 (277)
Q Consensus        73 v~~p~~~i~~l---~~ag~d~i~~H~e~~d~g~~~i~~i~~~----~~~~~-----------------d~-p~~~i---~  124 (277)
                      ..+++.+++++   .++|+|.+   -|-.+||  -+..+|+.    +..|+                 ++ ++.++   +
T Consensus        73 ~~d~~~E~~K~~~A~~~GADti---MDLStGg--dl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie  147 (423)
T TIGR00190        73 TSDIEEEVEKALIAIKYGADTV---MDLSTGG--DLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIE  147 (423)
T ss_pred             CCCHHHHHHHHHHHHHcCCCeE---eeccCCC--CHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence            34677776666   56799998   2333332  13334333    33222                 22 44444   4


Q ss_pred             HHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600        125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus       125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      .=++.|+|++|+|..   -..+.++.+++.+=..|+.-+-|
T Consensus       148 ~qa~dGVDfmTiH~G---i~~~~~~~~~~~~R~~giVSRGG  185 (423)
T TIGR00190       148 KQAKDGVDFMTIHAG---VLLEYVERLKRSGRITGIVSRGG  185 (423)
T ss_pred             HHHHhCCCEEEEccc---hhHHHHHHHHhCCCccCeecCcH
Confidence            447889999999987   66677777776543345544444

The thiC ortholog is designated thiA in Bacillus subtilis.

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=83.18  E-value=16  Score=33.58  Aligned_cols=128  Identities=14%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee---------------eeecc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET---------------HMMVQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~---------------Hlmv~   74 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.-+|=.|+..--++++.-++.  ++.+++               .....
T Consensus        71 PV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~--gv~VEaElG~i~g~e~~~~~~~~~~T  148 (276)
T cd00947          71 PVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAY--GVSVEAELGRIGGEEDGVVGDEGLLT  148 (276)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEeeecCccCCcccccccCC
Confidence            4455667665456666777789999999987777877888877777777753  333332               12355


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCC---------CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVD---------NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d---------~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++-.+.+.+.|+|++.+=+-..-         .-.+.++.|++....|+-+      |++.+...++.|+.-|-+..+
T Consensus       149 ~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~  228 (276)
T cd00947         149 DPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTD  228 (276)
T ss_pred             CHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChH
Confidence            7887777777789999975543322         2578899999987665532      888899999999999999775

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=83.16  E-value=24  Score=38.91  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             CCCCCchhhhhhhhhHHHHHhhCCCccEEE----eCCCCcCcHHHHHHccCCC--------CCcccccCHHHHHHHHHhh
Q psy11600        188 PGFGGQKFMQDMMPKVKWLRENYPTLNIEV----DGGVGPNTIDECAKCLTGF--------GGQKFMQDMMPKVKWLREN  255 (277)
Q Consensus       188 Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v----dGgV~~~tv~~~~~~gpg~--------ggq~F~~~~~~kI~~l~~~  255 (277)
                      +++.|...=..+.+-++.+++.. ++.+.+    +-|.-..|.-...++|++.        ||..+.+.+..-+..|+..
T Consensus       709 kDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~  787 (1143)
T TIGR01235       709 KDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGS  787 (1143)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhC
Confidence            45555433344445566666543 344443    3455556665566677764        6677777665555555532


Q ss_pred             CCCCeEEEeCCCCccCHHH
Q psy11600        256 YPTLNIEVDGGVGPNTIDE  274 (277)
Q Consensus       256 ~~~~~I~VDGGI~~~~~~~  274 (277)
                            ..|=|++.+.+.+
T Consensus       788 ------~~~tgidl~~l~~  800 (1143)
T TIGR01235       788 ------ERDPGLNVAWIRE  800 (1143)
T ss_pred             ------CCCCCcCHHHHHH
Confidence                  2334566555444

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=83.14  E-value=3.2  Score=38.29  Aligned_cols=73  Identities=12%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCCCe
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANVDQ   90 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~d~   90 (277)
                      .|...+.+..+.+.+.|+|.  +=+-|  |...|.=.  .+.++.+|+.++++++.+|.=-..-......  ..++|+++
T Consensus       152 ~~~~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v--~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~  227 (287)
T PRK05692        152 VPPEAVADVAERLFALGCYE--ISLGDTIGVGTPGQV--RAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITV  227 (287)
T ss_pred             CCHHHHHHHHHHHHHcCCcE--EEeccccCccCHHHH--HHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCE
Confidence            46778888999999999999  66777  55555422  2678889988888899999877653333332  24689999


Q ss_pred             E
Q psy11600         91 Y   91 (277)
Q Consensus        91 i   91 (277)
                      +
T Consensus       228 i  228 (287)
T PRK05692        228 F  228 (287)
T ss_pred             E
Confidence            8

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=83.02  E-value=16  Score=33.76  Aligned_cols=128  Identities=14%  Similarity=0.167  Sum_probs=93.3

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee---------------eecc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH---------------MMVQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H---------------lmv~   74 (277)
                      |=.+..|-..--+.+.+..+.|.+++-+|--.=+|=.|+..--++++.-+..  ++.+++=               -...
T Consensus        79 PV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~yT  156 (286)
T PRK08610         79 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEK--GVSVEAELGTVGGQEDDVVADGIIYA  156 (286)
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeccCCccCCCCCcccccC
Confidence            5556677775566777777889999999877777777877777777766643  3333321               2246


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++-.+.+.+.|+|++.+=+-..-|        -.+.++.|++.+..|+-+      |++.+...+++|+.-|-+..|
T Consensus       157 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~  235 (286)
T PRK08610        157 DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTE  235 (286)
T ss_pred             CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccH
Confidence            78887777778899999766544333        578899998887666533      888899999999999998765

>KOG2794|consensus

Probab=82.96  E-value=35  Score=31.50  Aligned_cols=94  Identities=21%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEE-ecc-----c--c--ccccCCCCCHHHHHHHHhcCCCCeeeeeeecc-----
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHL-DVM-----D--G--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ-----   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-Dim-----D--g--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~-----   74 (277)
                      |.+.-.-+.+|.++++.|.+.|...+-+ -+.     |  |  .+-+| +--++.|+-||+.||++.+-++.-.+     
T Consensus        61 Pg~~r~G~~rL~e~l~plv~~Gl~sViLfgvv~~~~Kd~~gs~Ads~~-gpvi~ai~~lr~~fPdL~i~cDVclc~Yssh  139 (340)
T KOG2794|consen   61 PGIYRLGVNRLKEELAPLVAKGLRSVILFGVVPEALKDPTGSEADSDN-GPVIRAIRLLRDRFPDLVIACDVCLCEYSSH  139 (340)
T ss_pred             CchhHHHHHHHHHHHHHHHHhccceEEEecCCCccccCcccccccCCC-CcHHHHHHHHHHhCcceEEEeeeeeccccCC
Confidence            5555566678999999999999988432 111     1  1  11122 22358899999999999887765432     


Q ss_pred             ------------CcHHhHH-------HHHhcCCCeEEEeccCCCCCHHHH
Q psy11600         75 ------------NPQQWIE-------PMADANVDQYTFHVEPVDNVPQVI  105 (277)
Q Consensus        75 ------------~p~~~i~-------~l~~ag~d~i~~H~e~~d~g~~~i  105 (277)
                                  |-.+-+.       .+.++||+.+. ..|.|||--..|
T Consensus       140 GHcGll~EdG~i~~~esv~rlaevAv~yAkAGa~vVa-pSDmmDgRV~aI  188 (340)
T KOG2794|consen  140 GHCGLLGEDGVINNDESVHRLAEVAVSYAKAGADVVA-PSDMMDGRVGAI  188 (340)
T ss_pred             CccceecccccccCHHHHHHHHHHHHHHHhcCCceec-chHhhcchHHHH
Confidence                        1222233       34568999885 678888743333

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=82.86  E-value=12  Score=35.41  Aligned_cols=114  Identities=13%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcCCCEEEEeccccc------cc----------------cCCCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGT------FV----------------PNLTFGHPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~------fv----------------p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      .+..+++.++|.|.  |+|-=++      |.                .-..|-.++++++|+..+.-++-+-+-..    
T Consensus       155 ~~aA~~a~~aGfDg--Veih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~  232 (338)
T cd02933         155 RQAARNAIEAGFDG--VEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN  232 (338)
T ss_pred             HHHHHHHHHcCCCE--EEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence            35556788899999  4443322      21                12334468999999875432455544322    


Q ss_pred             ------CcH---HhHHHHHhcCCCeEEE-eccC---C-CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600         75 ------NPQ---QWIEPMADANVDQYTF-HVEP---V-DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT  135 (277)
Q Consensus        75 ------~p~---~~i~~l~~ag~d~i~~-H~e~---~-d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it  135 (277)
                            .++   +.++.+.++|+|++++ |...   . ....+..+.+|+....|+-+     |+..-+.+.+-++|.|.
T Consensus       233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~  312 (338)
T cd02933         233 DMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVA  312 (338)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEE
Confidence                  122   3467788889999976 4221   1 12556788888887665532     55544444445588888


Q ss_pred             e
Q psy11600        136 F  136 (277)
Q Consensus       136 ~  136 (277)
                      +
T Consensus       313 ~  313 (338)
T cd02933         313 F  313 (338)
T ss_pred             e
Confidence            7

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=82.62  E-value=5.6  Score=36.81  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=93.6

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee------------------ee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET------------------HM   71 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~------------------Hl   71 (277)
                      |=.+..|-..--+.+++..+.|.+++-+|--.-+|=.|+..--++++.-++.  ++.+++                  .-
T Consensus        75 PValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~--gv~VEaElG~i~g~ed~~~~~~~~~~  152 (287)
T PF01116_consen   75 PVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAY--GVSVEAELGHIGGKEDGIESEEETES  152 (287)
T ss_dssp             EEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHT--T-EEEEEESBSSSSCTTCSSSTT-TT
T ss_pred             CEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhh--CCEEEEEeeeeeccCCCccccccccc
Confidence            4455566666667778878889999999999888988988888888887763  332221                  34


Q ss_pred             eccCcHHhHHHHHhcCCCeEEEeccCCCC----------CHHHHHHHHhhC-CCcccc------hhhhhHHHHhcCCCeE
Q psy11600         72 MVQNPQQWIEPMADANVDQYTFHVEPVDN----------VPQVIRQIKEAG-MKVGQV------LQDWIEPMADANVDQY  134 (277)
Q Consensus        72 mv~~p~~~i~~l~~ag~d~i~~H~e~~d~----------g~~~i~~i~~~~-~~~~d~------p~~~i~~~~~~g~d~i  134 (277)
                      +..+|++-.+.+.+.|+|++.+=+-..-|          -.+.+++|++.. ..|+-+      |++.+...+++|+.-|
T Consensus       153 ~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki  232 (287)
T PF01116_consen  153 LYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKI  232 (287)
T ss_dssp             CSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred             cccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence            55688888888889999999776554332          478999999988 776543      9999999999999999


Q ss_pred             EeecC
Q psy11600        135 TFHVE  139 (277)
Q Consensus       135 t~H~E  139 (277)
                      -+..|
T Consensus       233 Ni~T~  237 (287)
T PF01116_consen  233 NIGTE  237 (287)
T ss_dssp             EESHH
T ss_pred             EEehH
Confidence            99765

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=82.53  E-value=12  Score=36.02  Aligned_cols=80  Identities=9%  Similarity=0.016  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC-------CCCCHHHHHHHHhhCCCcc---cc--hh
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP-------VDNVPQVIRQIKEAGMKVG---QV--LQ  120 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~-------~d~g~~~i~~i~~~~~~~~---d~--p~  120 (277)
                      +.++++|+.  .+.+-+-+--.+..++.+.+.++|+|.+++|--.       ..+-|..+.++++....|+   ++  ++
T Consensus       123 ~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e  200 (369)
T TIGR01304       123 ERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYT  200 (369)
T ss_pred             HHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHH
Confidence            567888874  2443443322466778999999999999999322       1223555666655544433   22  33


Q ss_pred             hhhHHHHhcCCCeEE
Q psy11600        121 DWIEPMADANVDQYT  135 (277)
Q Consensus       121 ~~i~~~~~~g~d~it  135 (277)
                      . +..+.++|||.|.
T Consensus       201 ~-A~~~~~aGaDgV~  214 (369)
T TIGR01304       201 T-ALHLMRTGAAGVI  214 (369)
T ss_pred             H-HHHHHHcCCCEEE
Confidence            3 3333346777665

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK05927 hypothetical protein; Provisional

Probab=82.49  E-value=4.9  Score=38.23  Aligned_cols=120  Identities=18%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC--CHHHHHHHHhcCCCCee------eeee----eccCcHHhHHH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF--GHPVVKCLRNKIPKAFF------ETHM----MVQNPQQWIEP   82 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~--g~~~v~~l~~~~~~~~~------d~Hl----mv~~p~~~i~~   82 (277)
                      .+...+.+.++...+.|+..+|+  . |---|+..+  =.+.++.+|+.+|++.+      .+..    .=.-..+.+++
T Consensus        76 ls~eei~~~a~~~~~~G~~~i~i--~-gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~  152 (350)
T PRK05927         76 LSFDEFRSLMQRYVSAGVKTVLL--Q-GGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALER  152 (350)
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEE--e-CCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence            45566777788888899999886  3 444466433  23677888876665421      1110    11125567889


Q ss_pred             HHhcCCCeEEEe--ccCCCCCHHHHHHHHhhCCCcccc-hhhhhHHHHhc---C----CCeEEeecCCCCChHHHH
Q psy11600         83 MADANVDQYTFH--VEPVDNVPQVIRQIKEAGMKVGQV-LQDWIEPMADA---N----VDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        83 l~~ag~d~i~~H--~e~~d~g~~~i~~i~~~~~~~~d~-p~~~i~~~~~~---g----~d~it~H~E~~~~~~~~~  148 (277)
                      |.++|+++++ |  .|+.+      ..+++. -.++.. |++|++-+..+   |    +-++.=|.|   +..+.+
T Consensus       153 Lk~aGl~~l~-g~~~Et~~------~~~~~~-~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gE---t~e~ri  217 (350)
T PRK05927        153 LWDAGQRTIP-GGGAEILS------ERVRKI-ISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVE---SPEDIL  217 (350)
T ss_pred             HHHcCcccCC-CCCchhCC------HHHhhc-cCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCC---CHHHHH
Confidence            9999999882 2  45444      122222 125554 67777666433   2    345666677   665433

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.34  E-value=1.7  Score=40.27  Aligned_cols=72  Identities=14%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             hhhhhHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccC
Q psy11600        198 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNT  271 (277)
Q Consensus       198 ~~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~  271 (277)
                      .+.+.++.+++..+ ...|+|    .++|.+++   .++|++. =--.|.   .+.+++..+. ..+..+++-||||.+|
T Consensus       182 ~i~~av~~~r~~~~~~~kIeV----Ev~tleea~~a~~agaDiImLDnms---pe~l~~av~~~~~~~~leaSGGI~~~n  254 (290)
T PRK06559        182 SVQKAIAQARAYAPFVKMVEV----EVESLAAAEEAAAAGADIIMLDNMS---LEQIEQAITLIAGRSRIECSGNIDMTT  254 (290)
T ss_pred             cHHHHHHHHHHhCCCCCeEEE----ECCCHHHHHHHHHcCCCEEEECCCC---HHHHHHHHHHhcCceEEEEECCCCHHH
Confidence            34456777777665 344444    34565554   4566653 112333   3444444433 2357899999999999


Q ss_pred             HHHhh
Q psy11600        272 IDECA  276 (277)
Q Consensus       272 ~~~~~  276 (277)
                      ++.++
T Consensus       255 i~~yA  259 (290)
T PRK06559        255 ISRFR  259 (290)
T ss_pred             HHHHH
Confidence            98876

>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification

Probab=82.32  E-value=15  Score=32.09  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee--eeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET--HMMVQNPQQWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~--Hlmv~~p~~~i~~l~~ag~d~i~~H~e   96 (277)
                      .+++.++.+.+.|+|.+.        |.    .+..++.+|+.+|++++.+  .+.+.|+. .++.+.+.|++.+++..|
T Consensus         3 ~~~~~l~~l~~~g~dgi~--------v~----~~g~~~~~k~~~~~~~i~~~~~~nv~N~~-s~~~~~~~G~~~i~ls~E   69 (233)
T PF01136_consen    3 ELEKYLDKLKELGVDGIL--------VS----NPGLLELLKELGPDLKIIADYSLNVFNSE-SARFLKELGASRITLSPE   69 (233)
T ss_pred             HHHHHHHHHHhCCCCEEE--------Ec----CHHHHHHHHHhCCCCcEEEecCccCCCHH-HHHHHHHcCCCEEEECcc
Confidence            577889999999988733        32    3445778888778665554  45555554 477888899999999998


Q ss_pred             CCCCCHHHHHHHHhhC
Q psy11600         97 PVDNVPQVIRQIKEAG  112 (277)
Q Consensus        97 ~~d~g~~~i~~i~~~~  112 (277)
                      ..   .+-|+++.+.+
T Consensus        70 L~---~~ei~~i~~~~   82 (233)
T PF01136_consen   70 LS---LEEIKEIAENS   82 (233)
T ss_pred             CC---HHHHHHHHHhC
Confidence            72   45677777666

; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=82.28  E-value=38  Score=32.18  Aligned_cols=141  Identities=14%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             CCeeeeeeeccCc-------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCC
Q psy11600         64 KAFFETHMMVQNP-------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVD  132 (277)
Q Consensus        64 ~~~~d~Hlmv~~p-------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d  132 (277)
                      +.|+.+.=|+...       -+++..|.++|+|.+-+-+.-++ ....++.|++....|+  |.  --+++-..+++|++
T Consensus        19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e-~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~   97 (361)
T COG0821          19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDME-AAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVD   97 (361)
T ss_pred             CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcc
Confidence            5677777776532       33688899999999966544332 5667888888876655  33  45566777899999


Q ss_pred             eEEeecCCCCC---hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh
Q psy11600        133 QYTFHVEPVDN---VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN  209 (277)
Q Consensus       133 ~it~H~E~~~~---~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~  209 (277)
                      .+-+.+.--+.   ...+.+..+..|...-+|.|.|. ++  .++++...       .| | .+.++++.+..++.+.++
T Consensus        98 k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GS-Le--k~~~~ky~-------~p-t-~ealveSAl~~a~~~e~l  165 (361)
T COG0821          98 KVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGS-LE--KRLLEKYG-------GP-T-PEALVESALEHAELLEEL  165 (361)
T ss_pred             eEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCc-hh--HHHHHHhc-------CC-C-HHHHHHHHHHHHHHHHHC
Confidence            99998761111   23566677777888889999883 32  11122211       23 2 234566666666665554


Q ss_pred             -CCCccEEE
Q psy11600        210 -YPTLNIEV  217 (277)
Q Consensus       210 -~~~~~i~v  217 (277)
                       ++++.+++
T Consensus       166 ~f~~i~iS~  174 (361)
T COG0821         166 GFDDIKVSV  174 (361)
T ss_pred             CCCcEEEEE
Confidence             23444444

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=82.22  E-value=46  Score=31.45  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             cccHHHHHHHHHHcCCCEEEEecccc----ccccCCC-C-CHHHHHHHHhcCCCCeeeeeeec--cCcHHhHHHHHhcCC
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDG----TFVPNLT-F-GHPVVKCLRNKIPKAFFETHMMV--QNPQQWIEPMADANV   88 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg----~fvp~~~-~-g~~~v~~l~~~~~~~~~d~Hlmv--~~p~~~i~~l~~ag~   88 (277)
                      .....+-++.|.++|++++=+=--||    .|..++. + ..+.++.+++..++..+.+.+.-  .+ .+.++...++|+
T Consensus        24 ~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~gv  102 (337)
T PRK08195         24 LEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGT-VDDLKMAYDAGV  102 (337)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCccc-HHHHHHHHHcCC
Confidence            33445667778889988832211121    3331211 1 24678888766677777665532  23 356888888899


Q ss_pred             CeEE
Q psy11600         89 DQYT   92 (277)
Q Consensus        89 d~i~   92 (277)
                      +++.
T Consensus       103 d~ir  106 (337)
T PRK08195        103 RVVR  106 (337)
T ss_pred             CEEE
Confidence            9863

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.21  E-value=3.1  Score=38.30  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             hHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600        202 KVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       202 kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      -++.+++..+...|.|    ...|.+++   .++||++ .-..|.++.++++.+..  .++..+++=||||.+|++.+++
T Consensus       179 av~~~r~~~~~~~I~V----Ev~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~--~~~i~leAsGGIt~~ni~~~a~  252 (277)
T PRK05742        179 AVAAAHRIAPGKPVEV----EVESLDELRQALAAGADIVMLDELSLDDMREAVRLT--AGRAKLEASGGINESTLRVIAE  252 (277)
T ss_pred             HHHHHHHhCCCCeEEE----EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh--CCCCcEEEECCCCHHHHHHHHH
Confidence            3556666666555554    45666664   4567775 22344444444433322  2567899999999999988763

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=82.07  E-value=6.8  Score=38.08  Aligned_cols=12  Identities=33%  Similarity=0.531  Sum_probs=9.9

Q ss_pred             CCeEEEeCCCCc
Q psy11600        258 TLNIEVDGGVGP  269 (277)
Q Consensus       258 ~~~I~VDGGI~~  269 (277)
                      ...|-.||||+.
T Consensus       256 ~vpVIAdGGI~~  267 (404)
T PRK06843        256 NICIIADGGIRF  267 (404)
T ss_pred             CCeEEEeCCCCC
Confidence            467999999974

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=82.06  E-value=6.8  Score=39.11  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHH--HHHhcCCC
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIE--PMADANVD   89 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~--~l~~ag~d   89 (277)
                      .|+..+.+..+++.+.|+|.  +=|-|  |...|.-.  -+.++.||+.++ ++++.+|.=-..-.....  ...++|+|
T Consensus       152 ~t~e~~~~~a~~l~~~Gad~--I~IkDtaGll~P~~~--~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad  227 (499)
T PRK12330        152 HTVEGFVEQAKRLLDMGADS--ICIKDMAALLKPQPA--YDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD  227 (499)
T ss_pred             CCHHHHHHHHHHHHHcCCCE--EEeCCCccCCCHHHH--HHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence            35666777788899999999  66777  66666533  377999998875 899999987654333322  23578999


Q ss_pred             eE
Q psy11600         90 QY   91 (277)
Q Consensus        90 ~i   91 (277)
                      ++
T Consensus       228 ~v  229 (499)
T PRK12330        228 VV  229 (499)
T ss_pred             EE
Confidence            98

>PRK07360 FO synthase subunit 2; Reviewed

Probab=81.98  E-value=29  Score=33.07  Aligned_cols=72  Identities=14%  Similarity=0.348  Sum_probs=47.2

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCC---CCHHHHHHHHhcCCCCeeeeeeec------------cCcHHh
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT---FGHPVVKCLRNKIPKAFFETHMMV------------QNPQQW   79 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~---~g~~~v~~l~~~~~~~~~d~Hlmv------------~~p~~~   79 (277)
                      .+...+.+..+.+.+.|+..+|+  .-| .-|+..   +=.++++.+|+.+|++  .+|.+.            ....+.
T Consensus        91 ls~eeI~~~a~~a~~~G~~~i~l--~~G-~~p~~~~~e~~~~~i~~ik~~~~~i--~i~a~s~~ei~~~~~~~G~~~~e~  165 (371)
T PRK07360         91 LTIAEILEKAAEAVKRGATEVCI--QGG-LHPAADSLEFYLEILEAIKEEFPDI--HLHAFSPMEVYFAAREDGLSYEEV  165 (371)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEE--ccC-CCCCCCcHHHHHHHHHHHHHhCCCc--ceeeCCHHHHHHHHhhcCCCHHHH
Confidence            45566777788888999999554  555 345543   2246788888765553  333221            123566


Q ss_pred             HHHHHhcCCCeE
Q psy11600         80 IEPMADANVDQY   91 (277)
Q Consensus        80 i~~l~~ag~d~i   91 (277)
                      ++.|.+||++.+
T Consensus       166 l~~LkeAGld~~  177 (371)
T PRK07360        166 LKALKDAGLDSM  177 (371)
T ss_pred             HHHHHHcCCCcC
Confidence            899999999998

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=81.71  E-value=4.1  Score=37.92  Aligned_cols=71  Identities=21%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHH
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDE  274 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~  274 (277)
                      .+.++.++...+...|+|    .++|.++   ..++|++. =--.|.   .+.++++.+. ..+..|++-||||.+|+++
T Consensus       196 ~~av~~~r~~~~~~kIeV----Ev~sleea~ea~~~gaDiI~LDn~s---~e~~~~av~~~~~~~~ieaSGGI~~~ni~~  268 (296)
T PRK09016        196 RQAVEKAFWLHPDVPVEV----EVENLDELDQALKAGADIIMLDNFT---TEQMREAVKRTNGRALLEVSGNVTLETLRE  268 (296)
T ss_pred             HHHHHHHHHhCCCCCEEE----EeCCHHHHHHHHHcCCCEEEeCCCC---hHHHHHHHHhhcCCeEEEEECCCCHHHHHH
Confidence            345666666665544443    3445554   45566663 112222   3444444332 3467899999999999998


Q ss_pred             hhC
Q psy11600        275 CAK  277 (277)
Q Consensus       275 ~~~  277 (277)
                      +++
T Consensus       269 yA~  271 (296)
T PRK09016        269 FAE  271 (296)
T ss_pred             HHh
Confidence            763

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=81.67  E-value=13  Score=34.29  Aligned_cols=80  Identities=16%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC--cccc----hhhhhHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK--VGQV----LQDWIEP  125 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~d~----p~~~i~~  125 (277)
                      .+.++..|+..+.- .-+-+-+.++++ +....++|+||+-+  |  ..+++.++++++....  ++.+    -.+-+++
T Consensus       175 ~~~v~~aR~~~~~~-~~Igvsv~tlee-a~~A~~~gaDyI~l--D--~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~  248 (277)
T PRK08072        175 TKAVTSVREKLGHM-VKIEVETETEEQ-VREAVAAGADIIMF--D--NRTPDEIREFVKLVPSAIVTEASGGITLENLPA  248 (277)
T ss_pred             HHHHHHHHHhCCCC-CEEEEEeCCHHH-HHHHHHcCCCEEEE--C--CCCHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence            35677888765521 224444556654 55567899999955  4  3678889988876543  3333    6788899


Q ss_pred             HHhcCCCeEEee
Q psy11600        126 MADANVDQYTFH  137 (277)
Q Consensus       126 ~~~~g~d~it~H  137 (277)
                      ++++|+|.|++-
T Consensus       249 ~a~~Gvd~IAvg  260 (277)
T PRK08072        249 YGGTGVDYISLG  260 (277)
T ss_pred             HHHcCCCEEEEC
Confidence            999999999884

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=81.64  E-value=3.4  Score=36.38  Aligned_cols=60  Identities=13%  Similarity=-0.007  Sum_probs=45.1

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~  136 (277)
                      ....|.......|.+++  |+|..+|     .+++++.+|+.+..|+.+     -.+.++.+.++|||.+.+
T Consensus       135 ~~~~~a~aa~~~G~~~i--~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV  204 (205)
T TIGR01769       135 IAAAYCLAAKYFGMKWV--YLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT  204 (205)
T ss_pred             HHHHHHHHHHHcCCCEE--EEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence            34445666667799999  7777554     699999999998777766     355667788889998754

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=81.40  E-value=44  Score=30.69  Aligned_cols=123  Identities=20%  Similarity=0.302  Sum_probs=75.1

Q ss_pred             ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEe------ccccccc---------cCCCC--CHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLD------VMDGTFV---------PNLTF--GHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~D------imDg~fv---------p~~~~--g~~~v~~l~~~~~~~~   66 (277)
                      +.+.|=+.+.|+.  ...+-++.|.+.|+|.+-+=      +.||+.+         .+++.  -.+.++.+|+..+++|
T Consensus        17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~P   96 (265)
T COG0159          17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVP   96 (265)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCC
Confidence            4577888888754  55567777889999997664      3666653         12232  2467888887778888


Q ss_pred             eeeeeeccCc------HHhHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcC
Q psy11600         67 FETHMMVQNP------QQWIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADAN  130 (277)
Q Consensus        67 ~d~Hlmv~~p------~~~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g  130 (277)
                      +-. |...||      +++++.+.++|+|-+.+- |. .+....+.+..+++...++..     |.++++..++..
T Consensus        97 ivl-m~Y~Npi~~~Gie~F~~~~~~~GvdGlivp-DLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a  170 (265)
T COG0159          97 IVL-MTYYNPIFNYGIEKFLRRAKEAGVDGLLVP-DLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA  170 (265)
T ss_pred             EEE-EEeccHHHHhhHHHHHHHHHHcCCCEEEeC-CCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence            766 555676      445778889999987432 32 122333444444444333221     455555555554

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=81.02  E-value=10  Score=35.99  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCc-----HHhHHHHHhcCCCeEEEeccCC-----CC---CH----HHHHHHHhhCCCc
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNP-----QQWIEPMADANVDQYTFHVEPV-----DN---VP----QVIRQIKEAGMKV  115 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p-----~~~i~~l~~ag~d~i~~H~e~~-----d~---g~----~~i~~i~~~~~~~  115 (277)
                      +.++.+|+..|+.|+-+-|.+..+     ++..+.....++|.+.+|+...     ..   ..    +.|+++++..+.|
T Consensus       109 ~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vP  188 (352)
T PRK05437        109 DSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVP  188 (352)
T ss_pred             HHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCC
Confidence            345667776578998888877655     4555566667899999998441     11   12    5677787776555


Q ss_pred             ccc-------hhhhhHHHHhcCCCeEEeec
Q psy11600        116 GQV-------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus       116 ~d~-------p~~~i~~~~~~g~d~it~H~  138 (277)
                      +-+       ..+.++.+.++|+|.|.++-
T Consensus       189 VivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg  218 (352)
T PRK05437        189 VIVKEVGFGISKETAKRLADAGVKAIDVAG  218 (352)
T ss_pred             EEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence            543       45677888899999999864

>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional

Probab=80.89  E-value=38  Score=31.72  Aligned_cols=74  Identities=8%  Similarity=0.103  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHcCCCEEEEecccccc-ccCCC-----CCHHHHHHHHhcCCCCeeeeeeeccCc-HHhHHHHHhcCCCeEE
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTF-VPNLT-----FGHPVVKCLRNKIPKAFFETHMMVQNP-QQWIEPMADANVDQYT   92 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~f-vp~~~-----~g~~~v~~l~~~~~~~~~d~Hlmv~~p-~~~i~~l~~ag~d~i~   92 (277)
                      |.++++.|.+ |++|+++|  |-.+ +-.+.     .+.+.++.+.+.. +.++.+|..-..+ ...++.+.+..+|.+ 
T Consensus       163 l~~e~~~L~~-G~~~IQiD--EP~L~~~~~~~~~~~~~~~a~~~~~~~~-~~~i~l~tyfg~~~~~~~~~l~~~~vd~l-  237 (326)
T PRK08575        163 VNSLIKELSS-VVDAVEIH--EPSIFAKGIKRDTLEKLPEVYKTMAKNV-NIEKHLMTYFEINNLKRLDILFSLPVTYF-  237 (326)
T ss_pred             HHHHHHHHHc-CCCEEEec--CcceeCCCCCHHHHHHHHHHHHHHHhcC-CCCEEEECCCCCccccHHHHHhcCCCcEE-
Confidence            3456666666 99999888  3223 21211     1223444444432 3445444443332 236888889999999 


Q ss_pred             EeccCCC
Q psy11600         93 FHVEPVD   99 (277)
Q Consensus        93 ~H~e~~d   99 (277)
                       |+|...
T Consensus       238 -~ld~~~  243 (326)
T PRK08575        238 -GIDVIE  243 (326)
T ss_pred             -EEEecC
Confidence             777654

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=80.86  E-value=26  Score=32.54  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=68.6

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCCC-------CC-HHHHHHHH---hc--CCCCeeeee---eeccCcHHh
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT-------FG-HPVVKCLR---NK--IPKAFFETH---MMVQNPQQW   79 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~-------~g-~~~v~~l~---~~--~~~~~~d~H---lmv~~p~~~   79 (277)
                      +..|..+.+++++++|+--+|+  -|..|-+.-+       .. .+.++.||   +.  -+++.+-+=   +.....++-
T Consensus        91 ~~~~v~r~V~~~~~aGaagi~I--EDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deA  168 (292)
T PRK11320         91 GAFNIARTVKSMIKAGAAAVHI--EDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAA  168 (292)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEE--ecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHH
Confidence            5557888899999999999887  3432210000       01 13344443   21  123322111   011123333


Q ss_pred             ---HHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc------hhhhhHHHHhcCCCeEEeec
Q psy11600         80 ---IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        80 ---i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                         .+.+.++|||.+.+|.  .. .+..++.+.+....|+  .+      |..=+++|.++|+..+++..
T Consensus       169 I~Ra~aY~eAGAD~ifi~~--~~-~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~  235 (292)
T PRK11320        169 IERAQAYVEAGADMIFPEA--MT-ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPL  235 (292)
T ss_pred             HHHHHHHHHcCCCEEEecC--CC-CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEECh
Confidence               4567789999997764  22 3566777766555555  22      33458899999999999965

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=80.82  E-value=5.2  Score=38.40  Aligned_cols=81  Identities=16%  Similarity=0.129  Sum_probs=50.5

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHH-HHhcCCCeEEEeccCCCC-------------CHHHHHHHHhh-------
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEP-MADANVDQYTFHVEPVDN-------------VPQVIRQIKEA-------  111 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~-l~~ag~d~i~~H~e~~d~-------------g~~~i~~i~~~-------  111 (277)
                      ..|.+||+..+.+|+-+=+.+.++.+.+.. ..++|+|+||  +|-.+|             |..++..+++.       
T Consensus       192 ~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~It--IDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~  269 (368)
T PF01645_consen  192 QLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFIT--IDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKN  269 (368)
T ss_dssp             HHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEE--EE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEE--EeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc
Confidence            678999998779999999999999998777 7889999994  444333             43344444332       


Q ss_pred             C-CCcccc--------hhhhhHHHHhcCCCeEEe
Q psy11600        112 G-MKVGQV--------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       112 ~-~~~~d~--------p~~~i~~~~~~g~d~it~  136 (277)
                      . ...+.+        |.+.++.++ +|||.+.+
T Consensus       270 glr~~V~Li~sGgl~t~~dv~kala-LGAD~v~i  302 (368)
T PF01645_consen  270 GLRDRVSLIASGGLRTGDDVAKALA-LGADAVYI  302 (368)
T ss_dssp             T-CCCSEEEEESS--SHHHHHHHHH-CT-SEEE-
T ss_pred             CCCCceEEEEeCCccCHHHHHHHHh-cCCCeeEe
Confidence            2 112222        777776654 79999988

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=80.82  E-value=1.8  Score=40.27  Aligned_cols=68  Identities=13%  Similarity=0.041  Sum_probs=38.1

Q ss_pred             HHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHHhhC
Q psy11600        203 VKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       203 I~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      ++.++++.+...|+|    .++|.+++   .++|++. =--.|.+   +.+++..+. ..+..+++-||||++|++.+++
T Consensus       196 v~~~r~~~~~~kIeV----Evetleea~eA~~aGaDiImLDnmsp---e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~  268 (294)
T PRK06978        196 LDAAFALNAGVPVQI----EVETLAQLETALAHGAQSVLLDNFTL---DMMREAVRVTAGRAVLEVSGGVNFDTVRAFAE  268 (294)
T ss_pred             HHHHHHhCCCCcEEE----EcCCHHHHHHHHHcCCCEEEECCCCH---HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHh
Confidence            444444433333443    34555554   5566663 1123333   444443332 2367899999999999988763

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=80.71  E-value=4.1  Score=37.38  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             hhhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHH-HHhhCCCCeEEEeCCCCccCHHH
Q psy11600        200 MPKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDE  274 (277)
Q Consensus       200 l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~-l~~~~~~~~I~VDGGI~~~~~~~  274 (277)
                      .+.++.+++..+...+.|    ...|.+++   .++|+++ +=..|.+..+++..+ +++..++..+++=||||++|+.+
T Consensus       171 ~~av~~~R~~~~~~~IgV----ev~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~  246 (272)
T cd01573         171 LKALARLRATAPEKKIVV----EVDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAA  246 (272)
T ss_pred             HHHHHHHHHhCCCCeEEE----EcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHH
Confidence            345666666666554443    46677665   4466775 223455544444433 44444578899999999999988


Q ss_pred             hh
Q psy11600        275 CA  276 (277)
Q Consensus       275 ~~  276 (277)
                      ++
T Consensus       247 ~~  248 (272)
T cd01573         247 YA  248 (272)
T ss_pred             HH
Confidence            75

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=80.69  E-value=20  Score=33.19  Aligned_cols=128  Identities=15%  Similarity=0.138  Sum_probs=92.6

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee-----------------ee
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH-----------------MM   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H-----------------lm   72 (277)
                      |=.+..|-..-.+.+.+..+.|.+++-+|--.-+|-.|+..--++++.-+..  ++.+++=                 -.
T Consensus        79 PV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~  156 (288)
T TIGR00167        79 PVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKM--GVSVEAELGTLGGEEDGVSVADESAL  156 (288)
T ss_pred             cEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeeccCccCCccccccccc
Confidence            4456677776667788888889999999877777777877777777766643  4444332                 22


Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC---------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEee
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN---------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~---------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      ..+|++..+.+.+.|+|.+.+=+-..-|         -++.++.|++....|+-+      |++-+...+++|+.-|-+.
T Consensus       157 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  236 (288)
T TIGR00167       157 YTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNID  236 (288)
T ss_pred             CCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence            4578877777777899999766543222         467889998887666533      8888999999999999887


Q ss_pred             cC
Q psy11600        138 VE  139 (277)
Q Consensus       138 ~E  139 (277)
                      .|
T Consensus       237 T~  238 (288)
T TIGR00167       237 TE  238 (288)
T ss_pred             hH
Confidence            65

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=80.59  E-value=5.3  Score=36.57  Aligned_cols=74  Identities=18%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHH--HHhcCCCeE
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEP--MADANVDQY   91 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~--l~~ag~d~i   91 (277)
                      |...+.+..+.+.+.|++.+.+==+-|...|.-.  .+.++.+|+.+|++++.+|.=-..-......  ..++|++++
T Consensus       147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v--~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~i  222 (274)
T cd07938         147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQV--RRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRF  222 (274)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHH--HHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence            5566777888889999999444333377777633  3678899988888999999877654433332  346899988

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional

Probab=80.41  E-value=12  Score=33.49  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeecc-CcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhh
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQ-NPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWI  123 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~-~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i  123 (277)
                      .+|.+..++.+|+..|+++.-.  ++. .+..+...+.+.++..+  |.+.....+.+++.+++.+..++  .+ -..-+
T Consensus       148 ~SF~~~~l~~l~~~~p~~~~~~--l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~g~~v~~WTvn~~~~~  223 (249)
T PRK09454        148 SSFSEDALEAARQAAPELPRGL--LLDEWPDDWLELTRRLGCVSL--HLNHKLLDEARVAALKAAGLRILVYTVNDPARA  223 (249)
T ss_pred             EeCCHHHHHHHHHhCCCCcEEE--EeccccccHHHHHHhcCCeEE--ecccccCCHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence            4689999999999888866433  222 23344455556677767  54433335889999998876633  33 23456


Q ss_pred             HHHHhcCCCeEEe
Q psy11600        124 EPMADANVDQYTF  136 (277)
Q Consensus       124 ~~~~~~g~d~it~  136 (277)
                      +.+.+.|+|.|+-
T Consensus       224 ~~l~~~GVdgIiT  236 (249)
T PRK09454        224 RELLRWGVDCICT  236 (249)
T ss_pred             HHHHHcCCCEEEe
Confidence            7888889998775

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=80.40  E-value=30  Score=32.97  Aligned_cols=118  Identities=16%  Similarity=0.092  Sum_probs=72.5

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEec---------cc---ccccc------------------------C--CCCCHHHHH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDV---------MD---GTFVP------------------------N--LTFGHPVVK   56 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~Di---------mD---g~fvp------------------------~--~~~g~~~v~   56 (277)
                      -|.....+.+++.+++|+..+=+.+         -|   |--.|                        .  -.+..+.++
T Consensus       135 ~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  214 (351)
T cd04737         135 KDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIE  214 (351)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHH
Confidence            3666777788888888877666655         00   00001                        0  024678899


Q ss_pred             HHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--eccC-CCCCHH---HHHHHHhhC--CCcccc------hhhh
Q psy11600         57 CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVEP-VDNVPQ---VIRQIKEAG--MKVGQV------LQDW  122 (277)
Q Consensus        57 ~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e~-~d~g~~---~i~~i~~~~--~~~~d~------p~~~  122 (277)
                      ++|+. +++|+-+=- +.++ +..+.+.++|+|.|.+  |--- .|+++.   .+.++++..  +.++-.      ..+.
T Consensus       215 ~lr~~-~~~PvivKg-v~~~-~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di  291 (351)
T cd04737         215 FIAKI-SGLPVIVKG-IQSP-EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHV  291 (351)
T ss_pred             HHHHH-hCCcEEEec-CCCH-HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHH
Confidence            99985 778877652 3444 5677889999999988  6321 244443   344444333  223221      6777


Q ss_pred             hHHHHhcCCCeEEe
Q psy11600        123 IEPMADANVDQYTF  136 (277)
Q Consensus       123 i~~~~~~g~d~it~  136 (277)
                      ++.++ +||+.+.+
T Consensus       292 ~kaLa-lGA~~V~i  304 (351)
T cd04737         292 FKALA-SGADAVAV  304 (351)
T ss_pred             HHHHH-cCCCEEEE
Confidence            77777 88887776

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=80.34  E-value=12  Score=34.66  Aligned_cols=79  Identities=14%  Similarity=0.190  Sum_probs=53.4

Q ss_pred             HHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhH
Q psy11600         52 HPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIE  124 (277)
Q Consensus        52 ~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~  124 (277)
                      ...++++|++.| ..++.  .-|.+++ ++....++|+|.|  .+|-|+  |+.+++.-+.-  ..++.+    ..+-++
T Consensus       181 ~~ai~~~r~~~~~~~kIe--VEv~tle-ea~ea~~~gaDiI--~LDn~s--~e~l~~av~~~~~~~~leaSGGI~~~ni~  253 (281)
T PRK06106        181 REAIRRARAGVGHLVKIE--VEVDTLD-QLEEALELGVDAV--LLDNMT--PDTLREAVAIVAGRAITEASGRITPETAP  253 (281)
T ss_pred             HHHHHHHHHhCCCCCcEE--EEeCCHH-HHHHHHHcCCCEE--EeCCCC--HHHHHHHHHHhCCCceEEEECCCCHHHHH
Confidence            478888998765 23333  3455776 4556678999999  777665  55555544432  224444    678899


Q ss_pred             HHHhcCCCeEEee
Q psy11600        125 PMADANVDQYTFH  137 (277)
Q Consensus       125 ~~~~~g~d~it~H  137 (277)
                      .+++.|+|+|+.-
T Consensus       254 ~yA~tGVD~Is~G  266 (281)
T PRK06106        254 AIAASGVDLISVG  266 (281)
T ss_pred             HHHhcCCCEEEeC
Confidence            9999999999974

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=80.28  E-value=25  Score=31.16  Aligned_cols=100  Identities=13%  Similarity=-0.049  Sum_probs=58.0

Q ss_pred             HHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe-ccC----
Q psy11600         24 SQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQNPQQWIEPMADANVDQYTFH-VEP----   97 (277)
Q Consensus        24 ~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H-~e~----   97 (277)
                      ++...+.|+|-+|+-=-|..           +...|+.. ++.  -+..-+.+-.+......+.|+||+.|= +..    
T Consensus        80 ~dlA~~~~adGVHLg~~d~~-----------~~~~r~~~~~~~--iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~  146 (221)
T PRK06512         80 SRIAGRVKADGLHIEGNLAA-----------LAEAIEKHAPKM--IVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKP  146 (221)
T ss_pred             HHHHHHhCCCEEEECccccC-----------HHHHHHhcCCCC--EEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCC
Confidence            34444556677776433321           34555442 333  233333344444555567899999873 211    


Q ss_pred             --CCCCHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEe
Q psy11600         98 --VDNVPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 --~d~g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~  136 (277)
                        ...|...++++++....|+-.    -.+-++.+.++|++.|.+
T Consensus       147 ~~~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAv  191 (221)
T PRK06512        147 EAHPRNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVAL  191 (221)
T ss_pred             CCCCCChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEE
Confidence              112777888887776666543    466677788888888876

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family

Probab=80.19  E-value=12  Score=37.48  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             cHHHHHHHHHHcC--CCEEEEeccccccccCCC--CCHHHHHHHHhcCCC
Q psy11600         19 NLHSESQNLLDSG--ADYLHLDVMDGTFVPNLT--FGHPVVKCLRNKIPK   64 (277)
Q Consensus        19 ~l~~~~~~l~~~~--~~~~h~DimDg~fvp~~~--~g~~~v~~l~~~~~~   64 (277)
                      .....++.|++.|  +|.+-+=+|+|+|. .+.  +-.++++.+.+.+++
T Consensus       119 q~~~rl~~l~~~g~~~~kvE~i~~GGTft-~l~~~y~~~fl~~~~~a~~~  167 (522)
T TIGR01211       119 QVTARLEQLEQIGHPVDKVELIIMGGTFP-ARDLDYQEWFIKRCLNAMNG  167 (522)
T ss_pred             HHHHHHHHHHHhCCCCceEEEEEECCCcc-cCCHHHHHHHHHHHHHHhcc
Confidence            3445677888766  44555569999995 111  234566666665544

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=80.17  E-value=6.1  Score=37.90  Aligned_cols=115  Identities=12%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             HHHHHHHHcCCCEEEEeccc-cc----c----------------ccCCCCCHHHHHHHHhcCC-CCeeeeeeecc-----
Q psy11600         22 SESQNLLDSGADYLHLDVMD-GT----F----------------VPNLTFGHPVVKCLRNKIP-KAFFETHMMVQ-----   74 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimD-g~----f----------------vp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~-----   74 (277)
                      +.-++++++|.|.+-+---- |-    |                -....|-.++|+.+|+..+ +.++-+-+-..     
T Consensus       154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~  233 (382)
T cd02931         154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD  233 (382)
T ss_pred             HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence            44456778899994332222 21    2                2223455689999999864 55666655421     


Q ss_pred             ----------------CcH---HhHHHHHhcCCCeEEEeccCC----------CC--C--HHHHHHHHhhCCCcccc---
Q psy11600         75 ----------------NPQ---QWIEPMADANVDQYTFHVEPV----------DN--V--PQVIRQIKEAGMKVGQV---  118 (277)
Q Consensus        75 ----------------~p~---~~i~~l~~ag~d~i~~H~e~~----------d~--g--~~~i~~i~~~~~~~~d~---  118 (277)
                                      .++   +.++.+.++|+|++++|.-..          ..  +  ..+.+.+|+....|+-.   
T Consensus       234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~  313 (382)
T cd02931         234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGR  313 (382)
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCC
Confidence                            123   346777889999998884221          00  1  24677888876655432   


Q ss_pred             ---hhhhhHHHHhcCCCeEEe
Q psy11600        119 ---LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 ---p~~~i~~~~~~g~d~it~  136 (277)
                         |+..-+.+.+-++|.|.+
T Consensus       314 i~~~~~~~~~l~~g~~D~V~~  334 (382)
T cd02931         314 MEDPELASEAINEGIADMISL  334 (382)
T ss_pred             CCCHHHHHHHHHcCCCCeeee
Confidence               555555555556888887

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
3ovp_A	228	Crystal Structure Of Hrpe Length = 228		3e-61
3qc3_A	225	Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epi		2e-54
1h1y_A	228	The Structure Of The Cytosolic D-Ribulose-5-Phospha		3e-46
1tqx_A	227	Crystal Structure Of Pfal009167 A Putative D-Ribulo		1e-35
2fli_A	220	The Crystal Structure Of D-Ribulose 5-Phosphate 3-E		5e-33
3inp_A	246	2.05 Angstrom Resolution Crystal Structure Of D-Rib		5e-31
1tqj_A	230	Crystal Structure Of D-Ribulose 5-Phosphate 3-Epime		4e-27
1rpx_A	230	D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tub		5e-26
3ct7_A	231	Crystal Structure Of D-Allulose 6-Phosphate 3-Epime		1e-22

>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe Length = 228

Iteration: 1
 Score =  231 bits (590), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 147/228 (64%), Gaps = 44/228 (19%)
Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
           C IGPSILNSDL+NL +E   +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR ++ + 
Sbjct: 5   CKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQD 64
Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
            FF+ HMMV  P+QW++PMA A  +QYTFH+E  +N   +I+ I+E GMKV         
Sbjct: 65  PFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKV--------- 115
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
                                             GLAIKP T V+ +A +    D+ L+M
Sbjct: 116 ----------------------------------GLAIKPGTSVEYLAPWANQIDMALVM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+ 
Sbjct: 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 189

>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase (Np_954699) From Homo Sapiens At 2.20 A Resolution Length = 225

Iteration: 1
 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/228 (46%), Positives = 136/228 (59%), Gaps = 44/228 (19%)
Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK- 64
           C IGPSILNSDL+NL +E    LDSGADYLHLDV DG FVPN+TFGHPVV+ LR ++ + 
Sbjct: 6   CKIGPSILNSDLANLGAECLRXLDSGADYLHLDVXDGHFVPNITFGHPVVESLRKQLGQD 65
Query: 65  AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIE 124
            FF+ H  V  P+QW++P A A  +QYTFH+E  +N   +I+ I+E G KV         
Sbjct: 66  PFFDXHXXVSKPEQWVKPXAVAGANQYTFHLEATENPGALIKDIRENGXKV--------- 116
Query: 125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
                                             GLAIKP T V+ +A +    D  L+ 
Sbjct: 117 ----------------------------------GLAIKPGTSVEYLAPWANQIDXALVX 142
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQKF +D  PKV WLR  +P+L+IEVDGGVGP+T+ +CA+ 
Sbjct: 143 TVEPGFGGQKFXEDXXPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA 190

>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3- Epimerase From Rice Complexed With Sulfate Length = 228

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 48/229 (20%)
Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PS+L+SD +NL +E+  ++  GAD+LH+D+MDG FVPNLT G PV++ LR K  KA+ 
Sbjct: 9   IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-KHTKAYL 67
Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV NP                                            D++EP+A
Sbjct: 68  DCHLMVTNPS-------------------------------------------DYVEPLA 84
Query: 128 DANVDQYTFHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLVLI 183
            A    +TFH+E   DN  ++I+ IK  GM+ G++++P TPV+ +   +E+    +LVL+
Sbjct: 85  KAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLV 144
Query: 184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A  
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA 193

>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5-Phosphate 3- Epimerase From P.Falciparum Length = 227

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 43/232 (18%)
Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           M  ++ +I PS+L S++S L  E+Q +   GA+++HLDVMD  FVPNL+FG PV+  L+ 
Sbjct: 1   MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKK 60
Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
                FF+ H+MV+ P++++  +  +N  Q TFH E ++                     
Sbjct: 61  YTKSIFFDVHLMVEYPEKYVPLLKTSN--QLTFHFEALN--------------------- 97
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--A 178
                             E  +   Q+ ++I++  +  G++IKPKT V  +   +++   
Sbjct: 98  ------------------EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLI 139
Query: 179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA 230
           + VL+MTVEPGFGGQ FM DMM KV +LR+ Y  LNI+VDGG+   T +  A
Sbjct: 140 NTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISA 191

>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length = 220

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 52/254 (20%)
Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PSIL +D +N  SE   + ++ A+Y+H+D+MDG FVPN++FG  VV  +R K  K  F
Sbjct: 6   IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMR-KHSKLVF 64
Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV +P++++E  A A  D  T H E   ++   +++IK AGMK G V         
Sbjct: 65  DCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVV--------- 115
Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
                                             I P TP   +   ++  D VLIMTV 
Sbjct: 116 ----------------------------------INPGTPATALEPLLDLVDQVLIMTVN 141
Query: 188 PGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKCLTG-FGGQKFM 242
           PGFGGQ F+ + + KV    KW  E   + +IEVDGGV   TI  C +     F    ++
Sbjct: 142 PGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYL 201
Query: 243 ---QDMMPKVKWLR 253
               D++ +V+ LR
Sbjct: 202 FKASDLVSQVQTLR 215

>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of D-Ribulose-Phosphate 3- Epimerase From Francisella Tularensis Length = 246

Iteration: 1
 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 121/237 (51%), Gaps = 51/237 (21%)
Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           M H+Q  I PSIL++DL+ L  + + +L +GAD +H DVMD  +VPNLTFG  V+K LR+
Sbjct: 25  MKHIQ--INPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRD 82
Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
               A  + H+MV+                      PVD +                   
Sbjct: 83  YGITAGMDVHLMVK----------------------PVDAL------------------- 101
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-AD 179
             IE  A A      FH E  +++ + ++ IK  G++ GLA+ P T +D + +Y+ES  D
Sbjct: 102 --IESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCL-KYVESNID 158
Query: 180 LVLIMTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKC 232
            VLIM+V PGFGGQKF+  M+ K     KW+      + +E+DGGV P  I E A C
Sbjct: 159 RVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVC 215

>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length = 230

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 50/224 (22%)
Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
           ++ PSIL++D S L  E + + ++GAD++H+DVMDG FVPN+T G  +V  +R  + K  
Sbjct: 6   VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIR-PLTKKT 64
Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+M+  P++++                                           E  
Sbjct: 65  LDVHLMIVEPEKYV-------------------------------------------EDF 81
Query: 127 ADANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM 184
           A A  D  + HVE     ++ + + QI+E G K G  + P TP+D +   +   DL+LIM
Sbjct: 82  AKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIM 141
Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPN 224
           +V PGFGGQ F+ +++PK++ LR+          IEVDGG+ PN
Sbjct: 142 SVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN 185

>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length = 230

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 46/228 (20%)
Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
            S    ++ PSIL+++ S L  + + +  +G D++H+DVMDG FVPN+T G  VV  LR 
Sbjct: 6   FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLR- 64
Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
            I     + H+M+  P Q +     A  D  + H E                        
Sbjct: 65  PITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE------------------------ 100
Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
                         T H+       + I QIK  G K G+ + P TP+  I   +++ DL
Sbjct: 101 -----------QSSTIHLH------RTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143
Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPN 224
           VLIM+V PGFGGQ F++  + K+  LR+      LN  IEVDGGVGP 
Sbjct: 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPK 191

>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase From Escherichia Coli K-12 Length = 231

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 50/226 (22%)
Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PS++  DL     E    +DS ADY H+D+MDG FVPNLT   P       K+     
Sbjct: 3   ISPSLMCMDLLKF-KEQIEFIDSHADYFHIDIMDGHFVPNLTLS-PFFVSQVKKLATKPL 60
Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV  PQ                                           D+I  +A
Sbjct: 61  DCHLMVTRPQ-------------------------------------------DYIAQLA 77
Query: 128 DANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
            A  D  T H E ++    ++I +I+   MKVGL + P+TPV+ +  YI  AD + +MTV
Sbjct: 78  RAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTV 137
Query: 187 EPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDE 228
           +PGF GQ F+ +M+ K+     W         IEVDG     T ++
Sbjct: 138 DPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEK 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	8e-98
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	1e-97
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	8e-94
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	3e-70
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	5e-70
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	3e-69
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	2e-68
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	3e-68
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	6e-68
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	4e-18
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	4e-17
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	6e-15
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	1e-13
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A Length = 228

 Score =  285 bits (732), Expect = 8e-98
 Identities = 117/232 (50%), Positives = 148/232 (63%), Gaps = 45/232 (19%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           M+   C IGPSILNSDL+NL +E   +LDSGADYLHLDVMDG FVPN+TFGHPVV+ LR 
Sbjct: 1   MAS-GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRK 59

Query: 61  KI-PKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVL 119
           ++    FF+ HMMV  P+QW++PMA A  +QYTFH+E  +N   +I+ I+E GMKVG   
Sbjct: 60  QLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVG--- 116

Query: 120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD 179
                                                   LAIKP T V+ +A +    D
Sbjct: 117 ----------------------------------------LAIKPGTSVEYLAPWANQID 136

Query: 180 LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
           + L+MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+
Sbjct: 137 MALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAE 188

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Length = 227

 Score =  284 bits (730), Expect = 1e-97
 Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 43/233 (18%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           M  ++ +I PS+L S++S L  E+Q +   GA+++HLDVMD  FVPNL+FG PV+  L+ 
Sbjct: 1   MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKK 60

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
                FF+ H+MV+ P++++  +  +  +Q TFH E ++                     
Sbjct: 61  YTKSIFFDVHLMVEYPEKYVPLLKTS--NQLTFHFEALN--------------------- 97

Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-- 178
                             E  +   Q+ ++I++  +  G++IKPKT V  +   +++   
Sbjct: 98  ------------------EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLI 139

Query: 179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
           + VL+MTVEPGFGGQ FM DMM KV +LR+ Y  LNI+VDGG+   T +  A 
Sbjct: 140 NTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISAS 192

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Length = 228

 Score =  275 bits (705), Expect = 8e-94
 Identities = 95/229 (41%), Positives = 136/229 (59%), Gaps = 46/229 (20%)

Query: 6   CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA 65
             I PS+L+SD +NL +E+  ++  GAD+LH+D+MDG FVPNLT G PV++ LR K  KA
Sbjct: 7   AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR-KHTKA 65

Query: 66  FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEP 125
           + + H+MV NP  ++EP+A A    +TFH+E                             
Sbjct: 66  YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR-------------------------- 99

Query: 126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA---DLVL 182
                           DN  ++I+ IK  GM+ G++++P TPV+ +   +E+    +LVL
Sbjct: 100 ----------------DNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVL 143

Query: 183 IMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
           +MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A 
Sbjct: 144 VMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAAS 192

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Length = 246

 Score =  215 bits (551), Expect = 3e-70
 Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 51/237 (21%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           M H+Q  I PSIL++DL+ L  + + +L +GAD +H DVMD  +VPNLTFG  V+K LR+
Sbjct: 25  MKHIQ--INPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRD 82

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
               A  + H+MV+     IE  A A                                  
Sbjct: 83  YGITAGMDVHLMVKPVDALIESFAKAGAT------------------------------- 111

Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
             I            FH E  +++ + ++ IK  G++ GLA+ P T +D +     + D 
Sbjct: 112 -SI-----------VFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDR 159

Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKC 232
           VLIM+V PGFGGQKF+  M+ K K + +     +   L +E+DGGV P  I E A C
Sbjct: 160 VLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVC 215

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Length = 220

 Score =  214 bits (548), Expect = 5e-70
 Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 50/236 (21%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
           MS ++  I PSIL +D +N  SE   + ++ A+Y+H+D+MDG FVPN++FG  VV  +R 
Sbjct: 1   MSTLK--IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMR- 57

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
           K  K  F+ H+MV +P++++E  A A  D  T H E                        
Sbjct: 58  KHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE------------------------ 93

Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
                 +  ++                +++IK AGMK G+ I P TP   +   ++  D 
Sbjct: 94  ------STRHIH-------------GALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQ 134

Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
           VLIMTV PGFGGQ F+ + + KV  +     E   + +IEVDGGV   TI  C + 
Sbjct: 135 VLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEA 190

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Length = 230

 Score =  212 bits (543), Expect = 3e-69
 Identities = 71/236 (30%), Positives = 105/236 (44%), Gaps = 46/236 (19%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
            S    ++ PSIL+++ S L  + + +  +G D++H+DVMDG FVPN+T G  VV  LR 
Sbjct: 6   FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRP 65

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
                  + H+M+  P Q +     A  D  + H E                        
Sbjct: 66  IT-DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE------------------------ 100

Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
                                 ++ + I QIK  G K G+ + P TP+  I   +++ DL
Sbjct: 101 -----------------QSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143

Query: 181 VLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
           VLIM+V PGFGGQ F++  + K+  LR    E      IEVDGGVGP    +  + 
Sbjct: 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEA 199

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Length = 230

 Score =  210 bits (538), Expect = 2e-68
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 46/229 (20%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           + PSIL++D S L  E + + ++GAD++H+DVMDG FVPN+T G  +V  +R    K   
Sbjct: 7   VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTL 65

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+M+  P++++E  A A  D  + HV                            E  A
Sbjct: 66  DVHLMIVEPEKYVEDFAKAGADIISVHV----------------------------EHNA 97

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
             ++              + + QI+E G K G  + P TP+D +   +   DL+LIM+V 
Sbjct: 98  SPHLH-------------RTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN 144

Query: 188 PGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
           PGFGGQ F+ +++PK++ LR    E      IEVDGG+ PN   +  + 
Sbjct: 145 PGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEA 193

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Length = 231

 Score =  210 bits (537), Expect = 3e-68
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 50/231 (21%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
            I PS++  DL     + +  +DS ADY H+D+MDG FVPNLT     V  ++ K+    
Sbjct: 2   KISPSLMCMDLLKFKEQIE-FIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVK-KLATKP 59

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+MV  PQ +I  +A A  D  T H E ++                           
Sbjct: 60  LDCHLMVTRPQDYIAQLARAGADFITLHPETING-------------------------- 93

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
                              ++I +I+   MKVGL + P+TPV+ +  YI  AD + +MTV
Sbjct: 94  ----------QAF------RLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTV 137

Query: 187 EPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKC 232
           +PGF GQ F+ +M+ K+  L+            IEVDG     T ++    
Sbjct: 138 DPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVDGSCNQATYEKLMAA 187

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Length = 237

 Score =  209 bits (535), Expect = 6e-68
 Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 45/240 (18%)

Query: 1   MSHVQCM----IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVK 56
           +S +Q +    +   IL+++   L+ E   LL++  + LH D+ DG F    T G   +K
Sbjct: 5   LSLIQQLKQQKLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIK 64

Query: 57  CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG 116
                    F + H+MV+N  +  + +     +  T  +E   +    I  + +      
Sbjct: 65  YFP---THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYA 121

Query: 117 QVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE 176
                                              +   + +G  + P+TP+  +  Y++
Sbjct: 122 N----------------------------------QVYPVLIGACLCPETPISELEPYLD 147

Query: 177 SADLVLIMTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKC 232
             D++ ++T++P  G +   + ++ +V  +            I +DG +         + 
Sbjct: 148 QIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQG 207

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 80.0 bits (197), Expect = 4e-18
 Identities = 30/219 (13%), Positives = 64/219 (29%), Gaps = 47/219 (21%)

Query: 16  DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
           D SNL   +     S  +   +DV++   V  L  G  +V+ LR+  P           +
Sbjct: 13  DHSNL-KGAITAAVSVGN--EVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCAD 69

Query: 76  PQQWIEPM-ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQY 134
               +    A    D  T                                          
Sbjct: 70  AGGTVAKNNAVRGADWMTCICSA------------------------------------- 92

Query: 135 TFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGG 192
              +  +    + I  I     ++ + +      D   +++++  +  +   + +    G
Sbjct: 93  --TIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAG 150

Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
           + + +  + KVK L E      + V GG+  +T+     
Sbjct: 151 ETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEG 187

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207

 Score = 77.0 bits (189), Expect = 4e-17
 Identities = 25/221 (11%), Positives = 54/221 (24%), Gaps = 48/221 (21%)

Query: 12  ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM 71
            +  DL +    +  L    A+  ++D+++         G  V+  ++   P       M
Sbjct: 4   QVAIDLLST-EAALELAGKVAE--YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADM 60

Query: 72  MVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANV 131
              +  +    +A                                            A  
Sbjct: 61  KTMDAGELEADIA------------------------------------------FKAGA 78

Query: 132 DQYTFHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF 190
           D  T         +   ++  +     V + +         A+ + +      + +  G 
Sbjct: 79  DLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALG-AKFVEMHAGL 137

Query: 191 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             Q      +  +    E    +   V GGV   TI    K
Sbjct: 138 DEQAKPGFDLNGLLAAGEKAR-VPFSVAGGVKVATIPAVQK 177

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score = 71.1 bits (174), Expect = 6e-15
 Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 50/219 (22%)

Query: 16  DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
           D +NL +++  +  + A   ++DV++   +     G   V  LR+  P       M   +
Sbjct: 14  DQTNL-TDAVAVASNVAS--YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTD 70

Query: 76  PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYT 135
               +  MA                                           +A  D  T
Sbjct: 71  GGAILSRMA------------------------------------------FEAGADWIT 88

Query: 136 FHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGG 192
                 +  +    +   E   ++ + I     +     +++      +   + +    G
Sbjct: 89  VSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAG 148

Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             +  D + K++ L      + + + GG+ P  I     
Sbjct: 149 IGWTTDDLDKMRQLSAL--GIELSITGGIVPEDIYLFEG 185

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 22/219 (10%), Positives = 59/219 (26%), Gaps = 50/219 (22%)

Query: 16  DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
           D   +   +       A+   +D+++   +  +  G   V+ L+   P         + +
Sbjct: 11  DNQTM-DSAYETTRLIAE--EVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIAD 67

Query: 76  PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYT 135
             + +  M                                            +AN D  T
Sbjct: 68  AGKILSRMC------------------------------------------FEANADWVT 85

Query: 136 FHVE-PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEPGFGG 192
                 ++     +   KE    V + +      +   ++ ++    +V   + +    G
Sbjct: 86  VICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAG 145

Query: 193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
             + +  +  +K L +      + V GG+    +     
Sbjct: 146 VAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKG 182

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 49/218 (22%)

Query: 16  DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN 75
           D   L  E+   +D   D   +D+++      +  G   +K ++ K P         + +
Sbjct: 8   DELTL-PEAMVFMDKVVD--DVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMD 64

Query: 76  PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYT 135
              +   +                                            DA  D  T
Sbjct: 65  GGHFESQLL------------------------------------------FDAGADYVT 82

Query: 136 FHVE-PVDNVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIESADLVLIMTVEPGFGGQ 193
                 V  +   IR  KEAG +V + +         +    E+     ++ V  G   Q
Sbjct: 83  VLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQ 140

Query: 194 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK 231
              +  +  +  + +      I V GG+   T+ + A 
Sbjct: 141 AAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYAL 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 52/220 (23%)

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDNVPQVI--RQIKEAGMKVGQVLQD-- 121
           FET       +  +    DA VD +    V+  D    ++   +I    +     +    
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHI-IMSKDAVSGTL 65

Query: 122 ---WIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE 176
              W   +     +     VE V   N   ++  IK          + + P  +   YIE
Sbjct: 66  RLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKT---------EQRQPSMMTRMYIE 114

Query: 177 SADLVLIMTVEPGF-GGQKFMQDMMPKVK-------WLRENYPTLNIEVDGGVGPNTIDE 228
                     +  +   Q F +  + +++        L E  P  N+ +DG +G      
Sbjct: 115 --------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------ 160

Query: 229 CAK-CLTGFGGQKF-MQDMMP-KVKWL---RENYPTLNIE 262
             K  +       + +Q  M  K+ WL     N P   +E
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	100.0
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	100.0
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	100.0
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	100.0
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	100.0
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	100.0
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	100.0
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	100.0
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.97
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	99.95
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	99.94
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	99.94
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.94
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	99.93
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	99.9
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.9
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.89
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.89
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.88
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.88
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.86
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.85
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.84
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	99.84
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	99.82
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	99.79
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.78
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	99.73
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	99.66
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.62
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.61
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	99.57
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.57
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.54
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	99.45
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	99.39
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.38
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	99.36
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.34
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.34
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.32
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.29
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.26
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	99.22
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.21
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	99.2
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.19
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	99.19
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.14
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.12
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.11
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.06
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.02
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.94
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.89
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	98.72
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	98.71
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.65
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	98.58
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.56
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.46
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	98.46
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	98.42
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.35
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	98.33
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	98.17
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	98.13
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	98.13
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	98.06
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	98.05
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	98.03
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	98.01
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	97.9
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.89
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.89
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.88
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	97.84
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	97.82
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	97.81
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	97.78
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	97.74
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	97.71
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	97.66
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	97.65
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	97.56
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	97.54
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	97.52
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.44
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	97.39
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	97.34
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.33
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	97.28
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	97.28
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.15
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	97.11
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	97.07
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	97.04
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	97.02
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.96
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	96.95
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	96.87
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.81
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.79
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	96.75
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	96.67
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	96.63
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	96.47
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.46
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	96.43
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	96.4
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	96.37
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	96.26
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	96.23
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	96.18
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	96.05
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	95.77
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	95.76
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	95.74
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	95.73
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	95.73
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	95.57
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	95.45
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	95.37
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	95.32
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	95.27
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	95.15
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	94.81
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	94.74
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	94.52
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	94.43
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	94.37
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	94.35
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.31
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	94.26
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	94.24
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	94.17
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	94.14
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	94.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	93.85
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	93.59
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	93.59
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	93.51
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	93.44
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	93.22
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	93.12
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	93.11
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	93.11
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	93.03
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	92.95
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	92.92
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	92.67
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	92.66
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	92.56
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	92.54
3rpd_A	357	Methionine synthase (B12-independent); structural	92.39
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	92.36
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	92.34
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	92.29
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	92.22
3ble_A	337	Citramalate synthase from leptospira interrogans;	92.22
1viz_A	240	PCRB protein homolog; structural genomics, unknown	92.16
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	92.16
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	92.16
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	92.11
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	92.1
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	92.09
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	92.08
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	91.99
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	91.76
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	91.59
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	91.54
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	91.37
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	91.35
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	91.18
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	90.89
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	90.88
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	90.81
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	90.76
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	90.54
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	90.35
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	90.22
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	90.12
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	90.12
3qvq_A	252	Phosphodiesterase OLEI02445; structural genomics,	90.04
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	89.96
2pz0_A	252	Glycerophosphoryl diester phosphodiesterase; glyce	89.9
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	89.84
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	89.82
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	89.74
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	89.64
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	89.55
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	89.51
2otd_A	247	Glycerophosphodiester phosphodiesterase; structura	89.5
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	89.44
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	89.2
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	89.19
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	88.96
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	88.87
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	88.73
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	88.63
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	88.61
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	88.59
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	88.29
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	88.28
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	88.25
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	88.14
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	88.13
1ypx_A	375	Putative vitamin-B12 independent methionine synth	88.0
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	87.97
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	87.89
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	87.85
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	87.75
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	87.55
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	87.55
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	87.55
2o55_A	258	Putative glycerophosphodiester phosphodiesterase;	87.42
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	87.3
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	87.25
3ks6_A	250	Glycerophosphoryl diester phosphodiesterase; struc	87.2
3l12_A	313	Putative glycerophosphoryl diester phosphodiester;	87.14
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	86.86
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	86.76
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	86.73
3cny_A	301	Inositol catabolism protein IOLE; xylose isomerase	86.68
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	86.34
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	86.2
2qgq_A	304	Protein TM_1862; alpha-beta protein, structural ge	86.02
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	85.79
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	85.75
1u1j_A	765	5-methyltetrahydropteroyltriglutamate-- homocystei	85.74
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	85.62
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	85.42
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	85.36
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	85.27
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	84.86
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	84.74
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	84.71
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	84.53
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	84.43
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	84.29
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	84.28
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	84.12
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	83.96
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	83.95
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	83.84
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	83.58
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	83.46
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	83.41
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	83.39
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	83.37
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	83.21
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	83.17
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	83.12
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	82.83
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	82.83
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	82.77
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	82.75
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	82.72
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	82.59
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	82.46
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	82.37
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	82.23
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	82.16
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	82.14
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	82.13
3fst_A	304	5,10-methylenetetrahydrofolate reductase; TIM barr	82.08
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	81.97
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	81.88
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	81.85
1zcc_A	248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	81.85
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	81.7
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	81.65
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	81.63
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	81.41
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	81.05
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	81.04
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	80.93
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	80.92
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	80.9
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	80.82
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	80.82
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	80.76
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	80.74
1vd6_A	224	Glycerophosphoryl diester phosphodiesterase; glyce	80.72
1t7l_A	766	5-methyltetrahydropteroyltriglutamate-- homocystei	80.6
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	80.4
3no3_A	238	Glycerophosphodiester phosphodiesterase; structura	80.39
3ch0_A	272	Glycerophosphodiester phosphodiesterase; YP_677622	80.32
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	80.28
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	80.05

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=100.00  E-value=2.4e-52  Score=373.61  Aligned_cols=207  Identities=38%  Similarity=0.617  Sum_probs=192.6

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||+++++++|+..|++++|+|||+.||++|++.+.+
T Consensus        28 ~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~  107 (246)
T 3inp_A           28 IQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAK  107 (246)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHH
T ss_pred             CeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999997559999999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+|++|||.|+.+                                           ++.+.++.|++.|++.|++++|+
T Consensus       108 aGAd~itvH~Ea~~-------------------------------------------~~~~~i~~ir~~G~k~Gvalnp~  144 (246)
T 3inp_A          108 AGATSIVFHPEASE-------------------------------------------HIDRSLQLIKSFGIQAGLALNPA  144 (246)
T ss_dssp             HTCSEEEECGGGCS-------------------------------------------CHHHHHHHHHTTTSEEEEEECTT
T ss_pred             cCCCEEEEccccch-------------------------------------------hHHHHHHHHHHcCCeEEEEecCC
Confidence            99999999999887                                           77889999999999999999999


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC----CCccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~----~~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      ||++.++++++.+|++++|+|+|||+||+|+++.++||++++++.    .++.|+|||||+.+|++++.++|++.   |+
T Consensus       145 Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GS  224 (246)
T 3inp_A          145 TGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGS  224 (246)
T ss_dssp             CCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESH
T ss_pred             CCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEeh
Confidence            999999999999999999999999999999999999999998764    46899999999999999999999996   77


Q ss_pred             cccc-cCHHHHHHHHHhh
Q psy11600        239 QKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       239 q~F~-~~~~~kI~~l~~~  255 (277)
                      ..|. ++..+.++++|+.
T Consensus       225 aIf~a~dp~~~i~~l~~~  242 (246)
T 3inp_A          225 AIFNSDSYKQTIDKMRDE  242 (246)
T ss_dssp             HHHTSSCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHH
Confidence            8887 5777888888763

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=100.00  E-value=8.8e-51  Score=360.33  Aligned_cols=208  Identities=58%  Similarity=1.041  Sum_probs=196.7

Q ss_pred             CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccCcHHhHHH
Q psy11600          4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQNPQQWIEP   82 (277)
Q Consensus         4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~p~~~i~~   82 (277)
                      .+++|+|||||+|+.+|+++++.+++.|+||+|+|||||+||||++||+++++++|+.+ |++++|+|||+.||++|++.
T Consensus         3 ~~~~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~   82 (228)
T 3ovp_A            3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKP   82 (228)
T ss_dssp             -CCEEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHH
T ss_pred             CCcEeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999975 89999999999999999999


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI  162 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i  162 (277)
                      +.++|+|++|||.|+.+                                           ++.+.++.+++.|++.|+++
T Consensus        83 ~~~aGad~itvH~Ea~~-------------------------------------------~~~~~i~~i~~~G~k~gval  119 (228)
T 3ovp_A           83 MAVAGANQYTFHLEATE-------------------------------------------NPGALIKDIRENGMKVGLAI  119 (228)
T ss_dssp             HHHHTCSEEEEEGGGCS-------------------------------------------CHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHcCCCEEEEccCCch-------------------------------------------hHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999877                                           67888999999999999999


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      +|+||++.+++++..+|++++|+++|||+||+|++..++||+++++..+++.++|||||+.+|++.+.++|++.   |+.
T Consensus       120 ~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsa  199 (228)
T 3ovp_A          120 KPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSA  199 (228)
T ss_dssp             CTTSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHH
T ss_pred             cCCCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999996   778


Q ss_pred             ccc-cCHHHHHHHHHh
Q psy11600        240 KFM-QDMMPKVKWLRE  254 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~  254 (277)
                      .|. ++..+.++++++
T Consensus       200 If~a~dp~~~~~~l~~  215 (228)
T 3ovp_A          200 IMRSEDPRSVINLLRN  215 (228)
T ss_dssp             HHTCSCHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHH
Confidence            887 567777888775

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=100.00  E-value=1.9e-50  Score=358.86  Aligned_cols=203  Identities=34%  Similarity=0.573  Sum_probs=191.7

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +|+|||||+|+.+|+++++.+ +.|+||+|+|||||+||||++||++.++++|+. |++++|+|||+.||++|++.+.++
T Consensus         2 ~i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~-~~~~~dvhLmv~dp~~~i~~~~~a   79 (231)
T 3ctl_A            2 KISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKL-ATKPLDCHLMVTRPQDYIAQLARA   79 (231)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTT-CCSCEEEEEESSCGGGTHHHHHHH
T ss_pred             eEEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhc-cCCcEEEEEEecCHHHHHHHHHHc
Confidence            599999999999999999999 899999999999999999999999999999985 899999999999999999999999


Q ss_pred             CCCeEEEeccC-CCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         87 NVDQYTFHVEP-VDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        87 g~d~i~~H~e~-~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      |+|++|||+|+ .+                                           ++.+.++.|++.|++.|++++|+
T Consensus        80 GAd~itvh~Ea~~~-------------------------------------------~~~~~i~~i~~~G~k~gv~lnp~  116 (231)
T 3ctl_A           80 GADFITLHPETING-------------------------------------------QAFRLIDEIRRHDMKVGLILNPE  116 (231)
T ss_dssp             TCSEEEECGGGCTT-------------------------------------------THHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCEEEECcccCCc-------------------------------------------cHHHHHHHHHHcCCeEEEEEECC
Confidence            99999999998 76                                           77889999999999999999999


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---C-
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---G-  237 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---g-  237 (277)
                      ||++.++++++.+|++++|+++|||+||+|+++.++||++++++..    ++.|+|||||+.+|+.++.++|++.   | 
T Consensus       117 tp~~~~~~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~  196 (231)
T 3ctl_A          117 TPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGT  196 (231)
T ss_dssp             CCGGGGTTTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECT
T ss_pred             CcHHHHHHHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEcc
Confidence            9999999999999999999999999999999999999999998653    6889999999999999999999996   8 


Q ss_pred             Cccccc-C-HHHHHHHHHh
Q psy11600        238 GQKFMQ-D-MMPKVKWLRE  254 (277)
Q Consensus       238 gq~F~~-~-~~~kI~~l~~  254 (277)
                      +..|.. + ..+.++++|+
T Consensus       197 saif~~~d~~~~~~~~l~~  215 (231)
T 3ctl_A          197 SGLFNHAENIDEAWRIMTA  215 (231)
T ss_dssp             TTTGGGCSSHHHHHHHHHH
T ss_pred             HHHhCCCCcHHHHHHHHHH
Confidence            888874 6 7788888876

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=100.00  E-value=3.7e-50  Score=356.00  Aligned_cols=210  Identities=40%  Similarity=0.710  Sum_probs=193.9

Q ss_pred             CCCCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhH
Q psy11600          1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWI   80 (277)
Q Consensus         1 ~~~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i   80 (277)
                      |.+.+.+|+|||||+|+.+|+++++.+++.|+||+|+|||||+||||++||++.++++|+..|+.++|+|||+.||++|+
T Consensus         1 ~~~~~~~i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i   80 (227)
T 1tqx_A            1 MGTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYV   80 (227)
T ss_dssp             ---CCCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGG
T ss_pred             CCCCCCeEEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999975599999999999999999


Q ss_pred             HHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHH---HHHHhCCc
Q psy11600         81 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIR---QIKEAGMK  157 (277)
Q Consensus        81 ~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~---~I~~~g~~  157 (277)
                      +.+.+  +|++|||+|+.+.                                          ++.+.++   .|++.|++
T Consensus        81 ~~~~~--Ad~itvH~ea~~~------------------------------------------~~~~~i~~~~~i~~~G~k  116 (227)
T 1tqx_A           81 PLLKT--SNQLTFHFEALNE------------------------------------------DTERCIQLAKEIRDNNLW  116 (227)
T ss_dssp             GGCTT--SSEEEEEGGGGTT------------------------------------------CHHHHHHHHHHHHTTTCE
T ss_pred             HHHHh--CCEEEEeecCCcc------------------------------------------CHHHHHHHHHHHHHcCCe
Confidence            99887  9999999998651                                          4667888   99999999


Q ss_pred             cceeeCCCCCHHhHHHHHh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCC
Q psy11600        158 VGLAIKPKTPVDVIAEYIE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTG  235 (277)
Q Consensus       158 ~g~~i~p~t~~~~i~~~i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg  235 (277)
                      .|++++|+||++.++++++  .+|++++|+++|||+||+|.+..++||++++++.+++.|+|||||+.+|+.++.++|++
T Consensus       117 ~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd  196 (227)
T 1tqx_A          117 CGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGAN  196 (227)
T ss_dssp             EEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCC
T ss_pred             EEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCC
Confidence            9999999999999999999  89999999999999999999999999999999888899999999999999999999999


Q ss_pred             C---CCccccc-CHHHHHHHHHh
Q psy11600        236 F---GGQKFMQ-DMMPKVKWLRE  254 (277)
Q Consensus       236 ~---ggq~F~~-~~~~kI~~l~~  254 (277)
                      .   |+..|.. +..+.++++|+
T Consensus       197 ~~V~GsaIf~~~d~~~~i~~l~~  219 (227)
T 1tqx_A          197 IIVAGTSIFNAEDPKYVIDTMRV  219 (227)
T ss_dssp             EEEESHHHHTCSSHHHHHHHHHH
T ss_pred             EEEEeHHHhCCCCHHHHHHHHHH
Confidence            6   8888874 77788888875

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=100.00  E-value=3.2e-46  Score=332.63  Aligned_cols=203  Identities=19%  Similarity=0.348  Sum_probs=189.5

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +|+|||||+|+.+|.++++.+++.|+||+|+|||||+||||++||++.++++|+. ++.  |+|||+.||++|++.+.++
T Consensus        15 ~i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~-~~~--DvhLMv~~p~~~i~~~~~a   91 (237)
T 3cu2_A           15 KLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTH-CFK--DVHLMVRNQLEVAKAVVAN   91 (237)
T ss_dssp             CEEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTT-SEE--EEEEECSCHHHHHHHHHHT
T ss_pred             eEEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhh-CCC--CeEEEEECHHHHHHHHHHc
Confidence            3999999999999999999999999999999999999999999999999999985 554  9999999999999999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh---------CCc
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA---------GMK  157 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~---------g~~  157 (277)
                      |||++|||+|+.+                                           ++.+.++.|++.         |++
T Consensus        92 GAd~itvH~ea~~-------------------------------------------~~~~~i~~i~~~~~~~~~~~~g~~  128 (237)
T 3cu2_A           92 GANLVTLQLEQYH-------------------------------------------DFALTIEWLAKQKTTYANQVYPVL  128 (237)
T ss_dssp             TCSEEEEETTCTT-------------------------------------------SHHHHHHHHTTCEEEETTEEEECE
T ss_pred             CCCEEEEecCCcc-------------------------------------------cHHHHHHHHHhcccccccccCCce
Confidence            9999999999887                                           677888999999         999


Q ss_pred             cceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHH--
Q psy11600        158 VGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAK--  231 (277)
Q Consensus       158 ~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~--  231 (277)
                      .|++++|+||++.++++++.+|++++|+++|||+||+|.+..++||+++++...    ++.++|||||+.+|+.++.+  
T Consensus       129 ~gv~l~p~Tp~~~l~~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~  208 (237)
T 3cu2_A          129 IGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGT  208 (237)
T ss_dssp             EEEEECTTSCGGGGTTTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSS
T ss_pred             EEEEEeCCChHHHHHHHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999998764    58899999999999999999  


Q ss_pred             ccCCC---CCcccccCHHHHHHHHHhh
Q psy11600        232 CLTGF---GGQKFMQDMMPKVKWLREN  255 (277)
Q Consensus       232 ~gpg~---ggq~F~~~~~~kI~~l~~~  255 (277)
                      +|++.   |+..|..+..+.++++|+.
T Consensus       209 aGad~~VvGSaIf~~d~~~~~~~l~~~  235 (237)
T 3cu2_A          209 HQIDWLVSGSALFSGELKTNLKVWKSS  235 (237)
T ss_dssp             SCCCCEEECGGGGSSCHHHHHHHHHHH
T ss_pred             CCCcEEEEeeHHhCCCHHHHHHHHHHh
Confidence            99997   8888876777888888753

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=100.00  E-value=5.8e-42  Score=303.91  Aligned_cols=206  Identities=36%  Similarity=0.657  Sum_probs=188.9

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++|+|||+|+|+.++.++++.+++.|+||+|+|+|||+|+||++||++.++++|+. +++++++|||+.||+++++.+.+
T Consensus         5 ~~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~-~~~~~~vhlmv~dp~~~i~~~~~   83 (230)
T 1tqj_A            5 IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPL-TKKTLDVHLMIVEPEKYVEDFAK   83 (230)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG-CCSEEEEEEESSSGGGTHHHHHH
T ss_pred             cEEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhh-cCCcEEEEEEccCHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999985 78999999999999999999999


Q ss_pred             cCCCeEEEecc--CCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         86 ANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        86 ag~d~i~~H~e--~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      +|+|++|||.|  +.+                                           ...+..+.+++.|++.|+.++
T Consensus        84 aGadgv~vh~e~~~~~-------------------------------------------~~~~~~~~i~~~g~~~gv~~~  120 (230)
T 1tqj_A           84 AGADIISVHVEHNASP-------------------------------------------HLHRTLCQIRELGKKAGAVLN  120 (230)
T ss_dssp             HTCSEEEEECSTTTCT-------------------------------------------THHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCCEEEECcccccch-------------------------------------------hHHHHHHHHHHcCCcEEEEEe
Confidence            99999999999  877                                           677888999999999999999


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---  236 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---  236 (277)
                      |.||.+.+.++++.+|++++|+++|||++|+|.+..+++++++++..+    ++.+++||||+.+|+.++.++|++.   
T Consensus       121 p~t~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvv  200 (230)
T 1tqj_A          121 PSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA  200 (230)
T ss_dssp             TTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEE
T ss_pred             CCCcHHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEE
Confidence            999999999999999999999999999999999999999999988653    7889999999999999999999996   


Q ss_pred             CCcccc-cCHHHHHHHHHhh
Q psy11600        237 GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       237 ggq~F~-~~~~~kI~~l~~~  255 (277)
                      |+..|. ++..+.++++++.
T Consensus       201 GSai~~a~d~~~~~~~l~~~  220 (230)
T 1tqj_A          201 GSAVFNAPNYAEAIAGVRNS  220 (230)
T ss_dssp             SHHHHTSSCHHHHHHHHHTC
T ss_pred             CHHHHCCCCHHHHHHHHHHH
Confidence            888887 4788888888864

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=100.00  E-value=1.3e-37  Score=274.94  Aligned_cols=207  Identities=46%  Similarity=0.848  Sum_probs=192.0

Q ss_pred             CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH
Q psy11600          4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM   83 (277)
Q Consensus         4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l   83 (277)
                      ...+|+|||+|+|+.++.++++.+++.|+|++|+|+|||+|+||+++|++.++++|+. ++.++++|||+.||+++++.+
T Consensus         5 ~~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~-~~~~~~v~lmv~d~~~~i~~~   83 (228)
T 1h1y_A            5 AAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKH-TKAYLDCHLMVTNPSDYVEPL   83 (228)
T ss_dssp             -CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTT-CCSEEEEEEESSCGGGGHHHH
T ss_pred             cCCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhh-cCCcEEEEEEecCHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999985 688999999999999999999


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCCh-HHHHHHHHHhCCccceee
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNV-PQVIRQIKEAGMKVGLAI  162 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~-~~~~~~I~~~g~~~g~~i  162 (277)
                      .++|+|++++|.+..+                                           .. ....+.+++.|++.|+.+
T Consensus        84 ~~agad~v~vH~~~~~-------------------------------------------~~~~~~~~~i~~~g~~igv~~  120 (228)
T 1h1y_A           84 AKAGASGFTFHIEVSR-------------------------------------------DNWQELIQSIKAKGMRPGVSL  120 (228)
T ss_dssp             HHHTCSEEEEEGGGCT-------------------------------------------TTHHHHHHHHHHTTCEEEEEE
T ss_pred             HHcCCCEEEECCCCcc-------------------------------------------cHHHHHHHHHHHcCCCEEEEE
Confidence            9999999999999877                                           55 677888899999999999


Q ss_pred             CCCCCHHhHHHHHh---hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---
Q psy11600        163 KPKTPVDVIAEYIE---SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---  236 (277)
Q Consensus       163 ~p~t~~~~i~~~i~---~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---  236 (277)
                      +|.|+++.+.++++   .+|++++|+++|||+||+|.+..+++++++++..+++.++++|||+.+|+.++.++|++.   
T Consensus       121 ~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvv  200 (228)
T 1h1y_A          121 RPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVA  200 (228)
T ss_dssp             CTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred             eCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEE
Confidence            99999999999999   899999999999999999999999999999998878899999999999999999999996   


Q ss_pred             CCcccc-cCHHHHHHHHHh
Q psy11600        237 GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 ggq~F~-~~~~~kI~~l~~  254 (277)
                      |+..|. ++..+.++++++
T Consensus       201 Gsai~~~~d~~~~~~~l~~  219 (228)
T 1h1y_A          201 GSSIFGAAEPGEVISALRK  219 (228)
T ss_dssp             SHHHHTSSCHHHHHHHHHH
T ss_pred             CHHHHCCCCHHHHHHHHHH
Confidence            778887 477788888875

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=100.00  E-value=1.1e-31  Score=236.40  Aligned_cols=210  Identities=35%  Similarity=0.607  Sum_probs=188.2

Q ss_pred             CCCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHH
Q psy11600          2 SHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIE   81 (277)
Q Consensus         2 ~~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~   81 (277)
                      |.-+++|.|||+++|+.++.+.++.+.+.|+|++|+|+|||+|+||+++|++.++++|+. ++.++++|+|+.+|.++++
T Consensus         7 ~~~~~~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~-~~~~~~v~l~vnd~~~~v~   85 (230)
T 1rpx_A            7 SKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPI-TDLPLDVHLMIVEPDQRVP   85 (230)
T ss_dssp             CTTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGG-CCSCEEEEEESSSHHHHHH
T ss_pred             CCCceEEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhc-cCCcEEEEEEecCHHHHHH
Confidence            334457999999999999999999999999999999999999999999999999999986 5789999999999999999


Q ss_pred             HHHhcCCCeEEEecc--CCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccc
Q psy11600         82 PMADANVDQYTFHVE--PVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG  159 (277)
Q Consensus        82 ~l~~ag~d~i~~H~e--~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g  159 (277)
                      .+.++|+|.+++|.+  ..+                                           ......+.+++.|++.+
T Consensus        86 ~~~~~Gad~v~vh~~~~~~~-------------------------------------------~~~~~~~~~~~~g~~ig  122 (230)
T 1rpx_A           86 DFIKAGADIVSVHCEQSSTI-------------------------------------------HLHRTINQIKSLGAKAG  122 (230)
T ss_dssp             HHHHTTCSEEEEECSTTTCS-------------------------------------------CHHHHHHHHHHTTSEEE
T ss_pred             HHHHcCCCEEEEEecCccch-------------------------------------------hHHHHHHHHHHcCCcEE
Confidence            999999999999988  655                                           55677788888898999


Q ss_pred             eeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCC
Q psy11600        160 LAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTG  235 (277)
Q Consensus       160 ~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg  235 (277)
                      +.++|+|+.+.+..+...+|++++|++.||++||.|....+++++++++..+    ++.+.++|||+.+|+.++.++|++
T Consensus       123 ~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aGad  202 (230)
T 1rpx_A          123 VVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGAN  202 (230)
T ss_dssp             EEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCC
T ss_pred             EEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCC
Confidence            9999999999888888889999999999999999999989999988887654    678999999999999999999999


Q ss_pred             C---CCccccc-CHHHHHHHHHhh
Q psy11600        236 F---GGQKFMQ-DMMPKVKWLREN  255 (277)
Q Consensus       236 ~---ggq~F~~-~~~~kI~~l~~~  255 (277)
                      .   |+..|.. +..+.++++++.
T Consensus       203 ~vvvgSaI~~a~dp~~a~~~l~~~  226 (230)
T 1rpx_A          203 ALVAGSAVFGAPDYAEAIKGIKTS  226 (230)
T ss_dssp             EEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             EEEEChhhhCCCCHHHHHHHHHHH
Confidence            6   8888874 777888888753

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.97  E-value=5.5e-31  Score=229.78  Aligned_cols=205  Identities=40%  Similarity=0.712  Sum_probs=184.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++|+|||+|+|+.++.++++.+++.|+|++|+|+|||+|.+++++|++.++++|+. ++.++++|+|+.|+.++++.+.+
T Consensus         4 ~~~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~-~~~~~~v~l~v~d~~~~i~~~~~   82 (220)
T 2fli_A            4 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKH-SKLVFDCHLMVVDPERYVEAFAQ   82 (220)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTT-CCSEEEEEEESSSGGGGHHHHHH
T ss_pred             cEEEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHh-CCCCEEEEEeecCHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999985 68899999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+|++++|.+..+                                           ......+.+++.|.+.+++++|.
T Consensus        83 ~gad~v~vh~~~~~-------------------------------------------~~~~~~~~~~~~g~~i~~~~~~~  119 (220)
T 2fli_A           83 AGADIMTIHTESTR-------------------------------------------HIHGALQKIKAAGMKAGVVINPG  119 (220)
T ss_dssp             HTCSEEEEEGGGCS-------------------------------------------CHHHHHHHHHHTTSEEEEEECTT
T ss_pred             cCCCEEEEccCccc-------------------------------------------cHHHHHHHHHHcCCcEEEEEcCC
Confidence            99999999988765                                           56677788888888899999999


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      |+.+.+..+...+|+++.|+++||++||.|.+..+++++++++...    ++.+.++|||+.+|+.++.++|++.   |+
T Consensus       120 t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGs  199 (220)
T 2fli_A          120 TPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGS  199 (220)
T ss_dssp             SCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESH
T ss_pred             CCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEECh
Confidence            9999888888889999999999999999998888888888887553    6789999999999999999999996   77


Q ss_pred             ccccc-CHHHHHHHHHh
Q psy11600        239 QKFMQ-DMMPKVKWLRE  254 (277)
Q Consensus       239 q~F~~-~~~~kI~~l~~  254 (277)
                      ..|.. +..+.++++++
T Consensus       200 ai~~~~d~~~a~~~~~~  216 (220)
T 2fli_A          200 YLFKASDLVSQVQTLRT  216 (220)
T ss_dssp             HHHTSSCHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            77764 67777777765

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=99.95  E-value=2.9e-28  Score=217.80  Aligned_cols=165  Identities=25%  Similarity=0.377  Sum_probs=135.8

Q ss_pred             CeeeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhC-CCcccc------hhhhhHHH
Q psy11600         65 AFFETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAG-MKVGQV------LQDWIEPM  126 (277)
Q Consensus        65 ~~~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~-~~~~d~------p~~~i~~~  126 (277)
                      ..+...++..|.   +++++.+.++|+||+  |+|+|||        |+++++++|+.+ +.++|+      |++|++.|
T Consensus        28 ~~i~pSilsaD~~~L~~~i~~l~~~G~d~l--HvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~  105 (246)
T 3inp_A           28 IQINPSILSADLARLGDDVKAVLAAGADNI--HFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESF  105 (246)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCCE--EEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHH
T ss_pred             CeeehhhhcCChhhHHHHHHHHHHcCCCEE--EEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHH
Confidence            568888998875   678999999999999  9999987        999999999998 777765      89999999


Q ss_pred             HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL  206 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l  206 (277)
                      +++|||++|||.|   +..++.+.+++                     +++.++..++++||+|+.           +.+
T Consensus       106 ~~aGAd~itvH~E---a~~~~~~~i~~---------------------ir~~G~k~Gvalnp~Tp~-----------e~l  150 (246)
T 3inp_A          106 AKAGATSIVFHPE---ASEHIDRSLQL---------------------IKSFGIQAGLALNPATGI-----------DCL  150 (246)
T ss_dssp             HHHTCSEEEECGG---GCSCHHHHHHH---------------------HHTTTSEEEEEECTTCCS-----------GGG
T ss_pred             HHcCCCEEEEccc---cchhHHHHHHH---------------------HHHcCCeEEEEecCCCCH-----------HHH
Confidence            9999999999999   88777777765                     456677788999999985           233


Q ss_pred             HhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh----CCCCeEEEeCCCCccCHHHhhC
Q psy11600        207 RENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       207 ~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~----~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      +++.+.+|+++.|+|           +||||||.|++.+++||+++|++    .+++.|+||||||++|++++++
T Consensus       151 ~~~l~~vD~VlvMsV-----------~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~  214 (246)
T 3inp_A          151 KYVESNIDRVLIMSV-----------NPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAV  214 (246)
T ss_dssp             TTTGGGCSEEEEECS-----------CTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHT
T ss_pred             HHHHhcCCEEEEeee-----------cCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHH
Confidence            333445677765555           49999999999999999999975    3568999999999999998864

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=99.94  E-value=2.5e-27  Score=210.08  Aligned_cols=161  Identities=25%  Similarity=0.335  Sum_probs=130.2

Q ss_pred             eeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhc
Q psy11600         67 FETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADA  129 (277)
Q Consensus        67 ~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~  129 (277)
                      +...++..|   ++++++.+ ++|+||+  |+|+|||        |+.+++++|+.++.++|+      |++|++.|+++
T Consensus         3 i~pSila~D~~~l~~~i~~~-~~gad~l--HvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~a   79 (231)
T 3ctl_A            3 ISPSLMCMDLLKFKEQIEFI-DSHADYF--HIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARA   79 (231)
T ss_dssp             EEEBGGGSCGGGHHHHHHHH-HTTCSCE--EEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHH
T ss_pred             EEeehhhCChhhHHHHHHHH-HcCCCEE--EEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHc
Confidence            344555555   56678888 9999999  9999887        899999999998777665      99999999999


Q ss_pred             CCCeEEeecCCCCC-hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600        130 NVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE  208 (277)
Q Consensus       130 g~d~it~H~E~~~~-~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~  208 (277)
                      |||++|||.|   + ..++.+.++                     .+++.++..++++||+|+.           +.+++
T Consensus        80 GAd~itvh~E---a~~~~~~~~i~---------------------~i~~~G~k~gv~lnp~tp~-----------~~~~~  124 (231)
T 3ctl_A           80 GADFITLHPE---TINGQAFRLID---------------------EIRRHDMKVGLILNPETPV-----------EAMKY  124 (231)
T ss_dssp             TCSEEEECGG---GCTTTHHHHHH---------------------HHHHTTCEEEEEECTTCCG-----------GGGTT
T ss_pred             CCCEEEECcc---cCCccHHHHHH---------------------HHHHcCCeEEEEEECCCcH-----------HHHHH
Confidence            9999999999   7 666666555                     4567788888999999983           23333


Q ss_pred             hCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600        209 NYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.+.+|+.+.|+|           +||||||.|.+.+++||+++|++.    .++.|+||||||.+|+++++
T Consensus       125 ~l~~~D~VlvmsV-----------~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~  185 (231)
T 3ctl_A          125 YIHKADKITVMTV-----------DPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLM  185 (231)
T ss_dssp             TGGGCSEEEEESS-----------CTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHH
T ss_pred             HHhcCCEEEEeee-----------ccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHH
Confidence            3445677664444           499999999999999999999864    36889999999999998875

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=99.94  E-value=9.7e-27  Score=205.93  Aligned_cols=164  Identities=34%  Similarity=0.617  Sum_probs=134.7

Q ss_pred             CeeeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhh--CCCcccc------hhhhhHH
Q psy11600         65 AFFETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEA--GMKVGQV------LQDWIEP  125 (277)
Q Consensus        65 ~~~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~--~~~~~d~------p~~~i~~  125 (277)
                      ..+...++..|.   +++++.+.++|+||+  |+|+|||        |+.+++++|+.  +..++|+      |.+|++.
T Consensus         5 ~~i~psil~~D~~~l~~~i~~l~~~g~d~~--h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~   82 (228)
T 3ovp_A            5 CKIGPSILNSDLANLGAECLRMLDSGADYL--HLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKP   82 (228)
T ss_dssp             CEEEEBCTTSCGGGHHHHHHHHHHTTCSCE--EEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHH
T ss_pred             cEeeeeheeCCchhHHHHHHHHHHcCCCEE--EEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHH
Confidence            456677777764   678999999999999  8888886        99999999999  4667664      9999999


Q ss_pred             HHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600        126 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW  205 (277)
Q Consensus       126 ~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~  205 (277)
                      ++++|||+||||.|   +..++.+.+++                     ++..++.++++++|+|+.           +.
T Consensus        83 ~~~aGad~itvH~E---a~~~~~~~i~~---------------------i~~~G~k~gval~p~t~~-----------e~  127 (228)
T 3ovp_A           83 MAVAGANQYTFHLE---ATENPGALIKD---------------------IRENGMKVGLAIKPGTSV-----------EY  127 (228)
T ss_dssp             HHHHTCSEEEEEGG---GCSCHHHHHHH---------------------HHHTTCEEEEEECTTSCG-----------GG
T ss_pred             HHHcCCCEEEEccC---CchhHHHHHHH---------------------HHHcCCCEEEEEcCCCCH-----------HH
Confidence            99999999999999   87777777765                     456677788999999984           22


Q ss_pred             HHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        206 LRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       206 l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.++.+.+|..+.     ||+      +||||||.|.+.+++||+++|++.+++.|+||||||++|+++++
T Consensus       128 l~~~l~~~D~Vl~-----msv------~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~  187 (228)
T 3ovp_A          128 LAPWANQIDMALV-----MTV------EPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA  187 (228)
T ss_dssp             TGGGGGGCSEEEE-----ESS------CTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHH
T ss_pred             HHHHhccCCeEEE-----eee------cCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHH
Confidence            2233334566654     444      49999999999999999999999888999999999999999875

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.94  E-value=1.3e-27  Score=208.14  Aligned_cols=192  Identities=12%  Similarity=0.097  Sum_probs=166.6

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhc-CCCCeeeeeee--ccCcHHhHHHHHhc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNK-IPKAFFETHMM--VQNPQQWIEPMADA   86 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~-~~~~~~d~Hlm--v~~p~~~i~~l~~a   86 (277)
                      +.++|+|+.+++++++.+++.|.+++|+|||||.|   ++||++.+++||+. -+.+++|+|+|  ..+|.+|++.+.++
T Consensus         1 ~lila~D~~~l~~~~~~~~~~~~~~~~~kv~~~~f---~~~G~~~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~   77 (208)
T 2czd_A            1 MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI---LGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGA   77 (208)
T ss_dssp             CEEEECCCCSHHHHHHHHHHHGGGCSEEEEEHHHH---HHHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHT
T ss_pred             CeEEEecCCCHHHHHHHHHHhcccccEEEecHHHH---HhhCHHHHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999   78999999999986 37899999999  99999999999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|++|+|.+...                                              +.++.+++.+   |+.++|.|
T Consensus        78 Gad~vtvh~~~g~----------------------------------------------~~i~~~~~~~---gv~vl~~t  108 (208)
T 2czd_A           78 GADYVIVHTFVGR----------------------------------------------DSVMAVKELG---EIIMVVEM  108 (208)
T ss_dssp             TCSEEEEESTTCH----------------------------------------------HHHHHHHTTS---EEEEECCC
T ss_pred             CCCEEEEeccCCH----------------------------------------------HHHHHHHHhC---CcEEEEec
Confidence            9999999987533                                              3355566654   99999999


Q ss_pred             CHHhHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCCCcC--cHHHHHHccCCC---CCc
Q psy11600        167 PVDVIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPN--TIDECAKCLTGF---GGQ  239 (277)
Q Consensus       167 ~~~~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV~~~--tv~~~~~~gpg~---ggq  239 (277)
                      |.+.+.++ .+.++.++.|+++||+.||.|.+...++++.+++..+. +.+ +||||+..  ++.++.++|+++   |+.
T Consensus       109 ~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~~~~i~~lr~~~~~~~~i-v~gGI~~~g~~~~~~~~aGad~vvvGr~  187 (208)
T 2czd_A          109 SHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKI-LAPGIGAQGGKAKDAVKAGADYIIVGRA  187 (208)
T ss_dssp             CSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEE-EECCCCSSTTHHHHHHHHTCSEEEECHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCChHHHHHHHHhCCCCeEE-EECCCCCCCCCHHHHHHcCCCEEEEChH
Confidence            99877666 77888899999999999999999999999999988764 544 99999998  899999999996   777


Q ss_pred             ccc-cCHHHHHHHHHh
Q psy11600        240 KFM-QDMMPKVKWLRE  254 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~  254 (277)
                      .|. ++..+.++++++
T Consensus       188 I~~a~dp~~~~~~l~~  203 (208)
T 2czd_A          188 IYNAPNPREAAKAIYD  203 (208)
T ss_dssp             HHTSSSHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHH
Confidence            777 467777777765

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=99.93  E-value=4.8e-26  Score=201.34  Aligned_cols=165  Identities=29%  Similarity=0.406  Sum_probs=134.0

Q ss_pred             CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhC-CCcccc------hhhhhHHH
Q psy11600         65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAG-MKVGQV------LQDWIEPM  126 (277)
Q Consensus        65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~-~~~~d~------p~~~i~~~  126 (277)
                      ..+...++..|   ++++++.+.++|+||+  |+|+|||        |+.+++++|+.+ +.++|+      |.+|++.|
T Consensus         6 ~~i~pSila~D~~~l~~~i~~~~~~g~d~i--HvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~   83 (227)
T 1tqx_A            6 AIIAPSVLASNISKLAEETQRMESLGAEWI--HLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLL   83 (227)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCSEE--EEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGC
T ss_pred             CeEEeehhcCChhhHHHHHHHHHHcCCCEE--EEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHH
Confidence            34667777776   4567888889999999  9998886        899999999998 677665      99999999


Q ss_pred             HhcCCCeEEeecCCCCChH-HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVP-QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW  205 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~-~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~  205 (277)
                      ++  ||++|||.|   +.. ++.+.++.+                  ..++..++..++++||+|+.           +.
T Consensus        84 ~~--Ad~itvH~e---a~~~~~~~~i~~~------------------~~i~~~G~k~gvalnp~tp~-----------~~  129 (227)
T 1tqx_A           84 KT--SNQLTFHFE---ALNEDTERCIQLA------------------KEIRDNNLWCGISIKPKTDV-----------QK  129 (227)
T ss_dssp             TT--SSEEEEEGG---GGTTCHHHHHHHH------------------HHHHTTTCEEEEEECTTSCG-----------GG
T ss_pred             Hh--CCEEEEeec---CCccCHHHHHHHH------------------HHHHHcCCeEEEEeCCCCcH-----------HH
Confidence            99  999999999   765 677666610                  03566777788999999983           23


Q ss_pred             HHhhCC--CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        206 LRENYP--TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       206 l~~~~~--~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ++++.+  .+|+.+.|+|+           ||||||.|.+.+++||+++|++.+++.|+||||||.+|+++++
T Consensus       130 ~~~~l~~g~~D~VlvmsV~-----------pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~  191 (227)
T 1tqx_A          130 LVPILDTNLINTVLVMTVE-----------PGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISA  191 (227)
T ss_dssp             GHHHHTTTCCSEEEEESSC-----------TTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHH
T ss_pred             HHHHhhcCCcCEEEEeeec-----------cCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHH
Confidence            344445  57888755554           9999999999999999999998878899999999999998875

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=99.90  E-value=6.5e-25  Score=195.21  Aligned_cols=162  Identities=10%  Similarity=0.069  Sum_probs=131.0

Q ss_pred             eeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCC-ccc---chhhhhHHHHhcCC
Q psy11600         67 FETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMK-VGQ---VLQDWIEPMADANV  131 (277)
Q Consensus        67 ~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~-~~d---~p~~~i~~~~~~g~  131 (277)
                      +...++..|+   .++++.+.++|+||+  |+|+|||        |+.+++++|+.+.. .|.   .|++|++.++++||
T Consensus        16 i~psila~D~~~l~~~i~~~~~~gad~l--hvDvmDG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~~p~~~i~~~~~aGA   93 (237)
T 3cu2_A           16 LSVGILSANWLQLNEEVTTLLENQINVL--HFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLMVRNQLEVAKAVVANGA   93 (237)
T ss_dssp             EEEEGGGSCGGGHHHHHHHHHHTTCCEE--EEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECSCHHHHHHHHHHTTC
T ss_pred             EEEeeeeCCcccHHHHHHHHHHcCCCEE--EEEEecCccccchhhhHHHHHHHhhhCCCCeEEEEECHHHHHHHHHHcCC
Confidence            6778888775   456888888999999  8998886        78999999998854 222   29999999999999


Q ss_pred             CeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc---------CceEEEEecCCCCCchhhhhhhhh
Q psy11600        132 DQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA---------DLVLIMTVEPGFGGQKFMQDMMPK  202 (277)
Q Consensus       132 d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~---------d~vl~mav~Pgt~gq~~~~~~l~k  202 (277)
                      |++|||.|   +..++.+.++++                     +..         ++..++++||+|+.          
T Consensus        94 d~itvH~e---a~~~~~~~i~~i---------------------~~~~~~~~~~~~g~~~gv~l~p~Tp~----------  139 (237)
T 3cu2_A           94 NLVTLQLE---QYHDFALTIEWL---------------------AKQKTTYANQVYPVLIGACLCPETPI----------  139 (237)
T ss_dssp             SEEEEETT---CTTSHHHHHHHH---------------------TTCEEEETTEEEECEEEEEECTTSCG----------
T ss_pred             CEEEEecC---CcccHHHHHHHH---------------------HhcccccccccCCceEEEEEeCCChH----------
Confidence            99999999   988877777764                     344         56677899999983          


Q ss_pred             HHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhh
Q psy11600        203 VKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       203 I~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~  276 (277)
                       +.+.++.+.+|+.+     +||+      +||||||.|.+.+++||+++|++..    ++.|+||||||.+|+++++
T Consensus       140 -~~l~~~l~~~D~vl-----vMsv------~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~  205 (237)
T 3cu2_A          140 -SELEPYLDQIDVIQ-----LLTL------DPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFK  205 (237)
T ss_dssp             -GGGTTTTTTCSEEE-----EESE------ETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHH
T ss_pred             -HHHHHHhhcCceee-----eeee------ccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHH
Confidence             34444555677765     4554      6999999999999999999998653    5889999999999998875

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.90  E-value=1.6e-24  Score=189.44  Aligned_cols=192  Identities=10%  Similarity=0.006  Sum_probs=150.8

Q ss_pred             eeeccccCcccHHHHHHHHHHcCCCEEE-EeccccccccCCCCCHHHHHHHHhcC--CCCeeeeeeeccCcHHhHHHHHh
Q psy11600          9 GPSILNSDLSNLHSESQNLLDSGADYLH-LDVMDGTFVPNLTFGHPVVKCLRNKI--PKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         9 ~~s~~~~d~~~l~~~~~~l~~~~~~~~h-~DimDg~fvp~~~~g~~~v~~l~~~~--~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++|++|+|+.+++++++.+++.+ +++| +||||+.|   ++||++.|++||+.+  +++++|+|+|. .|..+++.+.+
T Consensus         4 ~~~ilalD~~~~~~~~~~~~~~~-~~v~~~kv~~~~f---~~~G~~~i~~l~~~~p~~~v~lD~kl~d-ip~t~~~~~~~   78 (216)
T 1q6o_A            4 PMLQVALDNQTMDSAYETTRLIA-EEVDIIEVGTILC---VGEGVRAVRDLKALYPHKIVLADAKIAD-AGKILSRMCFE   78 (216)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHG-GGCSEEEECHHHH---HHHCTHHHHHHHHHCTTSEEEEEEEECS-CHHHHHHHHHH
T ss_pred             CCeEEEECCCCHHHHHHHHHHhc-ccCCEEEECHHHH---HHhCHHHHHHHHHhCCCCeEEEEEEecc-cHHHHHHHHHh
Confidence            57999999999999999999886 4444 89999999   689999999999975  46889999995 89999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC-C
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK-P  164 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~-p  164 (277)
                      +|+|++|+|.+...   .                                       ++....+.+++.|.+.++-+. +
T Consensus        79 ~Gad~itvh~~~g~---~---------------------------------------~l~~~~~~~~~~g~~~~~~ll~~  116 (216)
T 1q6o_A           79 ANADWVTVICCADI---N---------------------------------------TAKGALDVAKEFNGDVQIELTGY  116 (216)
T ss_dssp             TTCSEEEEETTSCH---H---------------------------------------HHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEeccCCH---H---------------------------------------HHHHHHHHHHHcCCCceeeeeeC
Confidence            99999999988653   1                                       244566677777777666333 3


Q ss_pred             --CCCHHhHHHHHhhcCceE---EEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCcCcHHHHHHccCCC--
Q psy11600        165 --KTPVDVIAEYIESADLVL---IMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKCLTGF--  236 (277)
Q Consensus       165 --~t~~~~i~~~i~~~d~vl---~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~~~~gpg~--  236 (277)
                        .++.+.+.++ ...++++   .|+++||+.|      ..++++.+++..+ ++.+.++|||+..|+.++.++|+++  
T Consensus       117 ~t~~~~~~l~~~-~~~~~vl~~a~~~~~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~iv  189 (216)
T 1q6o_A          117 WTWEQAQQWRDA-GIGQVVYHRSRDAQAAGVAW------GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFI  189 (216)
T ss_dssp             CCHHHHHHHHHT-TCCEEEEECCHHHHHTTCCC------CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEE
T ss_pred             CChhhHHHHHhc-CcHHHHHHHHHHHHhcCCCC------CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEE
Confidence              4455544443 3456777   7788999987      3456777766543 6779999999999999999999996  


Q ss_pred             -CCccccc-CHHHHHHHHHh
Q psy11600        237 -GGQKFMQ-DMMPKVKWLRE  254 (277)
Q Consensus       237 -ggq~F~~-~~~~kI~~l~~  254 (277)
                       |+..|.. +..+.++++++
T Consensus       190 vG~~I~~a~dp~~~~~~~~~  209 (216)
T 1q6o_A          190 AGRSIRDAASPVEAARQFKR  209 (216)
T ss_dssp             ESHHHHTSSCHHHHHHHHHH
T ss_pred             EeehhcCCCCHHHHHHHHHH
Confidence             7788874 66677777765

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.89  E-value=1.6e-24  Score=193.49  Aligned_cols=197  Identities=13%  Similarity=0.133  Sum_probs=160.9

Q ss_pred             EeeeccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH---hH
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ---WI   80 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~---~i   80 (277)
                      =+||++++|+.+++++++.+++.|  ++|  +|+|++       ++||++.+++||+..+.+++|+|+| ..|..   ++
T Consensus        14 ~~~~ilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~-------~~~G~~~v~~lr~~~~~v~lD~kl~-Dip~t~~~~i   85 (245)
T 1eix_A           14 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMF-------TLFGPQFVRELQQRGFDIFLDLKFH-DIPNTAAHAV   85 (245)
T ss_dssp             CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEHHHH-------HHHHHHHHHHHHHTTCCEEEEEEEC-SCHHHHHHHH
T ss_pred             CCCeEEEECCCCHHHHHHHHHHhCccCcEEEEcHHHH-------HHhCHHHHHHHHHCCCcEEEEeecc-ccHHHHHHHH
Confidence            479999999999999999999998  899  999996       6899999999998546899999999 77774   88


Q ss_pred             HHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCC-cc-
Q psy11600         81 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGM-KV-  158 (277)
Q Consensus        81 ~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~-~~-  158 (277)
                      +.+.++|+|++|||.+...   .                                       .+...++.+++.|+ +. 
T Consensus        86 ~~~~~~Gad~vTvH~~~g~---~---------------------------------------~l~~~~~~~~~~G~~~~~  123 (245)
T 1eix_A           86 AAAADLGVWMVNVHASGGA---R---------------------------------------MMTAAREALVPFGKDAPL  123 (245)
T ss_dssp             HHHHHHTCSEEEEBGGGCH---H---------------------------------------HHHHHHHTTGGGGGGCCE
T ss_pred             HHHHhCCCCEEEEeccCCH---H---------------------------------------HHHHHHHHHHHcCCCCCc
Confidence            8999999999999998743   1                                       13455556666665 44 


Q ss_pred             ceeeCCCCCH--HhHHHH---HhhcCceEEEEe-cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcC--------
Q psy11600        159 GLAIKPKTPV--DVIAEY---IESADLVLIMTV-EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN--------  224 (277)
Q Consensus       159 g~~i~p~t~~--~~i~~~---i~~~d~vl~mav-~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~--------  224 (277)
                      .+++.+.|+.  +.+.++   ++..|.++.|++ +|+++++.|+...++ ++++++..+...+.|||||+..        
T Consensus       124 ~l~v~~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~  202 (245)
T 1eix_A          124 LIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQR  202 (245)
T ss_dssp             EEEECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCC
T ss_pred             EEEEEecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCHHH-HHHHHHhcCCCCEEEECCcCCCCCCccchh
Confidence            5577766665  666655   356688888887 788888889999888 9999887766679999999999        


Q ss_pred             ---cHHHHHHccCCC---CCccccc-CHHHHHHHHHhh
Q psy11600        225 ---TIDECAKCLTGF---GGQKFMQ-DMMPKVKWLREN  255 (277)
Q Consensus       225 ---tv~~~~~~gpg~---ggq~F~~-~~~~kI~~l~~~  255 (277)
                         |..++.++|+++   |+..|.. +..+.++++++.
T Consensus       203 rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~  240 (245)
T 1eix_A          203 RIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINAS  240 (245)
T ss_dssp             SCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             ccCCHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence               999999999997   7788874 777888888763

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.89  E-value=8.5e-24  Score=185.19  Aligned_cols=194  Identities=14%  Similarity=0.136  Sum_probs=160.3

Q ss_pred             eccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCC--CeeeeeeeccCcHHhHHHHHhcCC
Q psy11600         11 SILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPK--AFFETHMMVQNPQQWIEPMADANV   88 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~--~~~d~Hlmv~~p~~~i~~l~~ag~   88 (277)
                      =++|+|+.+++++++.+++.+ +  |+|+||..|++|+++|++.|+++|+.+|+  +++|+|+| ..|..+++.+.++|+
T Consensus         9 lilalD~~~~~~~~~~~~~~~-~--~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~-d~p~~~~~~~~~aGa   84 (218)
T 3jr2_A            9 IQIALDQTNLTDAVAVASNVA-S--YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTT-DGGAILSRMAFEAGA   84 (218)
T ss_dssp             EEEEECCSSHHHHHHHHHHHG-G--GCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHHHHHHTC
T ss_pred             eEEEeCCCCHHHHHHHHHHhc-C--CceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeec-ccHHHHHHHHHhcCC
Confidence            489999999999999999852 3  79999999999999999999999998665  67799999 689999999999999


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccce-eeCCCCC
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGL-AIKPKTP  167 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~-~i~p~t~  167 (277)
                      |++++|.+....                                          ...+..+.+++.|++.++ .++|.|+
T Consensus        85 d~i~vh~~~~~~------------------------------------------~~~~~~~~~~~~g~~~~~d~l~~~T~  122 (218)
T 3jr2_A           85 DWITVSAAAHIA------------------------------------------TIAACKKVADELNGEIQIEIYGNWTM  122 (218)
T ss_dssp             SEEEEETTSCHH------------------------------------------HHHHHHHHHHHHTCEEEEECCSSCCH
T ss_pred             CEEEEecCCCHH------------------------------------------HHHHHHHHHHHhCCccceeeeecCCH
Confidence            999999876430                                          245677778888888887 7888886


Q ss_pred             HHhHHHHHh-hcCce-EEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600        168 VDVIAEYIE-SADLV-LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       168 ~~~i~~~i~-~~d~v-l~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                       +...++.+ .+|++ +.|+++|++.||.|.++.+++|++++.  +++.++++|||+.+|+.++.++|++.   |+..|.
T Consensus       123 -~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~--~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~  199 (218)
T 3jr2_A          123 -QDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSA--LGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAG  199 (218)
T ss_dssp             -HHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSH
T ss_pred             -HHHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHhC--CCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence             56666654 57865 458889999899999999999988875  46789999999999999999999986   888887


Q ss_pred             c-CHHHHHHHHHh
Q psy11600        243 Q-DMMPKVKWLRE  254 (277)
Q Consensus       243 ~-~~~~kI~~l~~  254 (277)
                      . +..+.+ ++++
T Consensus       200 a~dp~~a~-~l~~  211 (218)
T 3jr2_A          200 AEGQQTAA-ALRE  211 (218)
T ss_dssp             HHHHHHHH-HHHH
T ss_pred             CCCHHHHH-HHHH
Confidence            3 555556 6654

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.88  E-value=9.3e-24  Score=188.53  Aligned_cols=196  Identities=13%  Similarity=0.159  Sum_probs=161.4

Q ss_pred             eeeccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH---hHH
Q psy11600          9 GPSILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ---WIE   81 (277)
Q Consensus         9 ~~s~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~---~i~   81 (277)
                      +|||+|+|+.+++++++.+++.|  ++|  +|+|+|       ++||++.|++||+..+.+++|+|+| ..|..   +++
T Consensus         5 ~~lilalD~~~l~~~~~~v~~~~~~v~~~Kv~~d~~-------~~~G~~~v~~lr~~~~~v~lD~kl~-Dip~t~~~~~~   76 (246)
T 2yyu_A            5 TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELY-------YQEGPAIVAFLKEQGHAVFLDLKLH-DIPNTVKQAMK   76 (246)
T ss_dssp             CCEEEECCCSSHHHHHHHHGGGTTSCCEEEECHHHH-------HHHTHHHHHHHHHTTCEEEEEEEEC-SCHHHHHHHHH
T ss_pred             CCeEEEeCCCCHHHHHHHHHHhcccccEEEeCHHHH-------HHhCHHHHHHHHHCCCeEEEEeecc-cchHHHHHHHH
Confidence            58999999999999999999888  599  999996       6899999999998546899999999 77877   899


Q ss_pred             HHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHH---hCCcc
Q psy11600         82 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKE---AGMKV  158 (277)
Q Consensus        82 ~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~---~g~~~  158 (277)
                      .+.++|+|++|||.+...   .                                       .+...++.+++   .|++.
T Consensus        77 ~~~~~Gad~vTvH~~~g~---~---------------------------------------~l~~~~~~~~~~~~~G~~~  114 (246)
T 2yyu_A           77 GLARVGADLVNVHAAGGR---R---------------------------------------MMEAAIEGLDAGTPSGRMR  114 (246)
T ss_dssp             HHHHTTCSEEEEEGGGCH---H---------------------------------------HHHHHHHHHHHHSCSSSCC
T ss_pred             HHHhcCCCEEEEECCCCH---H---------------------------------------HHHHHHHHHHhhcccCCcC
Confidence            999999999999998754   1                                       23566677777   67653


Q ss_pred             --ceeeCCCCCH--HhH-HHH---HhhcCceEEEEec-CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcC-----
Q psy11600        159 --GLAIKPKTPV--DVI-AEY---IESADLVLIMTVE-PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN-----  224 (277)
Q Consensus       159 --g~~i~p~t~~--~~i-~~~---i~~~d~vl~mav~-Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~-----  224 (277)
                        .++++|.|+.  +.+ .++   ++..|.++.|+++ |+++++.|+....+ ++.+++..+..-+.|||||+..     
T Consensus       115 ~~~lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~V~gGI~~~g~~~~  193 (246)
T 2yyu_A          115 PRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANE-AAFIKERCGASFLAVTPGIRFADDAAH  193 (246)
T ss_dssp             CEEEEESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECCHHH-HHHHHHHHCTTSEEEECCCCCCC----
T ss_pred             CCEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeCHHH-HHHHHHhcCCCCEEEeCCcCCCCCCcc
Confidence              5889999995  566 554   4566888889886 88778889888887 8888876653339999999999     


Q ss_pred             ------cHHHHHHccCCC---CCccccc-CHHHHHHHHHhh
Q psy11600        225 ------TIDECAKCLTGF---GGQKFMQ-DMMPKVKWLREN  255 (277)
Q Consensus       225 ------tv~~~~~~gpg~---ggq~F~~-~~~~kI~~l~~~  255 (277)
                            |..++.++|+++   |+..|.. +..+.++++++.
T Consensus       194 dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~  234 (246)
T 2yyu_A          194 DQVRVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHE  234 (246)
T ss_dssp             ---CCCCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHcCCCEEEECHhhcCCCCHHHHHHHHHHH
Confidence                  999999999997   7788874 788888888764

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.88  E-value=1.9e-22  Score=174.71  Aligned_cols=193  Identities=20%  Similarity=0.179  Sum_probs=161.1

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEec-cccccccC-CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcCC
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDV-MDGTFVPN-LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADANV   88 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~Di-mDg~fvp~-~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag~   88 (277)
                      ++|+|+.+++++++.+++.+ +  |+|+ |+|.  |+ +++|++.++++|+.+|++++.+|+|+.++.++ ++.+.++|+
T Consensus         4 i~a~D~~~~~~~~~~~~~~~-~--~~diie~G~--p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Ga   78 (211)
T 3f4w_A            4 QLALDELTLPEAMVFMDKVV-D--DVDIIEVGT--PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGA   78 (211)
T ss_dssp             EEEECSCCHHHHHHHHHHHG-G--GCSEEEECH--HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTC
T ss_pred             EEEeCCCCHHHHHHHHHHhh-c--CccEEEeCc--HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCC
Confidence            68999999999999999884 5  8999 7887  77 88999999999998789999999999998887 999999999


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee-eCCCCC
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA-IKPKTP  167 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~-i~p~t~  167 (277)
                      |.+++|.+....                                          ++..+.+.+++.|++..+. ++|.++
T Consensus        79 d~v~v~~~~~~~------------------------------------------~~~~~~~~~~~~g~~~~v~~~~~~t~  116 (211)
T 3f4w_A           79 DYVTVLGVTDVL------------------------------------------TIQSCIRAAKEAGKQVVVDMICVDDL  116 (211)
T ss_dssp             SEEEEETTSCHH------------------------------------------HHHHHHHHHHHHTCEEEEECTTCSSH
T ss_pred             CEEEEeCCCChh------------------------------------------HHHHHHHHHHHcCCeEEEEecCCCCH
Confidence            999999775420                                          3456777888888877775 577777


Q ss_pred             HHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-
Q psy11600        168 VDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-  242 (277)
Q Consensus       168 ~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-  242 (277)
                      .+.+..+.+. +|++   .++||+.||.+.+..+++++++++..+++.+.++|||+.+++.++.++|++.   |+..|. 
T Consensus       117 ~~~~~~~~~~g~d~i---~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~  193 (211)
T 3f4w_A          117 PARVRLLEEAGADML---AVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHA  193 (211)
T ss_dssp             HHHHHHHHHHTCCEE---EEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTC
T ss_pred             HHHHHHHHHcCCCEE---EEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence            7777777765 7763   5689998888766667889999888778999999999999999999999996   666666 


Q ss_pred             cCHHHHHHHHHh
Q psy11600        243 QDMMPKVKWLRE  254 (277)
Q Consensus       243 ~~~~~kI~~l~~  254 (277)
                      ++..+.++++++
T Consensus       194 ~d~~~~~~~l~~  205 (211)
T 3f4w_A          194 ADPAGEARKISQ  205 (211)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            467777777765

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.86  E-value=1.5e-22  Score=179.99  Aligned_cols=194  Identities=15%  Similarity=0.173  Sum_probs=157.1

Q ss_pred             eeccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH---hHHH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ---WIEP   82 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~---~i~~   82 (277)
                      +-|+|+|+.+++++++.+++.|  ++|  +|+|+|       ++||++.+++||+..+.+++|+|+| ..|..   +++.
T Consensus         5 ~lilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~-------~~~G~~~v~~l~~~~~~v~lD~kl~-Dip~t~~~~~~~   76 (239)
T 1dbt_A            5 LPIIALDFASAEETLAFLAPFQQEPLFVKVGMELF-------YQEGPSIVKQLKERNCELFLDLKLH-DIPTTVNKAMKR   76 (239)
T ss_dssp             SCEEECCCSSHHHHHHHTGGGTTSCCEEEECHHHH-------HHHTHHHHHHHHHTTCEEEEEEEEC-SCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHhcccCcEEEECHHHH-------HHhCHHHHHHHHHCCCcEEEEeccc-cchHHHHHHHHH
Confidence            4689999999999999999888  599  999996       7899999999998546899999999 77774   8889


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh---CCc-c
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA---GMK-V  158 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~---g~~-~  158 (277)
                      +.++|+|++|||.+...   .                                       .+...++.+++.   |++ +
T Consensus        77 ~~~~Gad~vtvH~~~g~---~---------------------------------------~l~~~~~~~~~~~~~g~~~~  114 (239)
T 1dbt_A           77 LASLGVDLVNVHAAGGK---K---------------------------------------MMQAALEGLEEGTPAGKKRP  114 (239)
T ss_dssp             HHTTTCSEEEEEGGGCH---H---------------------------------------HHHHHHHHHHHHSCTTSCCC
T ss_pred             HHhcCCCEEEEeCcCCH---H---------------------------------------HHHHHHHHHHhhhccCCCCc
Confidence            99999999999998743   1                                       134566777777   765 2


Q ss_pred             -ceeeCCCCCH--HhH-HHH-H--hhcCceEEEEec-CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcH----
Q psy11600        159 -GLAIKPKTPV--DVI-AEY-I--ESADLVLIMTVE-PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI----  226 (277)
Q Consensus       159 -g~~i~p~t~~--~~i-~~~-i--~~~d~vl~mav~-Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv----  226 (277)
                       ++++.+.|+.  +.+ .++ +  +..|.++.|+++ |+++++.|+... ++++.+++..+...+.|||||+..+.    
T Consensus       115 ~~~~V~~~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~-~~i~~lr~~~~~~~i~v~gGI~~~~~~~~d  193 (239)
T 1dbt_A          115 SLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSEDAAND  193 (239)
T ss_dssp             EEEEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG-GGHHHHTTTSCTTCEEEECCBCCTTSCCTT
T ss_pred             cEEEEEEcCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH-HHHHHHHHhcCCCcEEEeCCcCCCCCCccc
Confidence             6777776655  556 544 4  457888889886 888888898888 89999988776667999999999988    


Q ss_pred             -------HHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        227 -------DECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       227 -------~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                             .++.++|+++   |+..|. ++..+.++++++
T Consensus       194 q~rv~tp~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~  232 (239)
T 1dbt_A          194 QVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRL  232 (239)
T ss_dssp             CSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHH
T ss_pred             eeccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHH
Confidence                   8899999997   778887 477777777765

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.85  E-value=2e-21  Score=172.41  Aligned_cols=188  Identities=17%  Similarity=0.192  Sum_probs=156.6

Q ss_pred             ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEe------cccccccc-----------CCCCCHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLD------VMDGTFVP-----------NLTFGHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~D------imDg~fvp-----------~~~~g~~~v~~l~~~~~~~~   66 (277)
                      ..+.||++++|+.  ++.+.++.+++. +|++|+|      +|||+|++           |++++.+.++++|+. +++ 
T Consensus         5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~-~~~-   81 (248)
T 1geq_A            5 GSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH-SST-   81 (248)
T ss_dssp             TEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT-CCC-
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCC-
Confidence            4589999999996  899999999998 9999999      99999999           999999999999986 665 


Q ss_pred             eeeeeecc-Cc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         67 FETHMMVQ-NP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        67 ~d~Hlmv~-~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                       .+|+|+. ||      .++++.+.++|+|.+++|.....                                        
T Consensus        82 -pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~----------------------------------------  120 (248)
T 1geq_A           82 -PIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVF----------------------------------------  120 (248)
T ss_dssp             -CEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGG----------------------------------------
T ss_pred             -CEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChh----------------------------------------
Confidence             5899984 88      78999999999999988855433                                        


Q ss_pred             CCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC-ceEEEEecCCCCCch--hhhhhhhhHHHHHhhCCCccEE
Q psy11600        140 PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD-LVLIMTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIE  216 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d-~vl~mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~  216 (277)
                         +...+.+.+++.|.+..++++|.|+.+.+..+...+| ++.++++ ||+.|++  +.+..++.++++++.. ++.+.
T Consensus       121 ---~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~-~G~~g~~~~~~~~~~~~i~~l~~~~-~~pi~  195 (248)
T 1geq_A          121 ---HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSL-YGTTGAREEIPKTAYDLLRRAKRIC-RNKVA  195 (248)
T ss_dssp             ---GHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECC-C-------CCCHHHHHHHHHHHHHC-SSCEE
T ss_pred             ---hHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEEC-CccCCCCCCCChhHHHHHHHHHhhc-CCCEE
Confidence               5567888889999999999999999999988888888 8878888 9877765  5567788888888765 68899


Q ss_pred             EeCCCCc-CcHHHHHHccCCC---CCcccc
Q psy11600        217 VDGGVGP-NTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       217 vdGgV~~-~tv~~~~~~gpg~---ggq~F~  242 (277)
                      ++|||+. +++.++.++|++.   |+..|.
T Consensus       196 ~~GGI~~~e~i~~~~~~Gad~vivGsai~~  225 (248)
T 1geq_A          196 VGFGVSKREHVVSLLKEGANGVVVGSALVK  225 (248)
T ss_dssp             EESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             EEeecCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence            9999999 9999999999885   665554

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.84  E-value=3.5e-21  Score=166.26  Aligned_cols=194  Identities=14%  Similarity=0.097  Sum_probs=149.1

Q ss_pred             eeccccCcccHHHHHHHHHHcC--CCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC-cHHhHHHHHhc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSG--ADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN-PQQWIEPMADA   86 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~--~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~-p~~~i~~l~~a   86 (277)
                      .-|+|+|+.+++++++.+++.+  +++  ++||++.|   +++|++.+++||+.+|+.++++|+|+.| |..+++.+.++
T Consensus         2 ~li~a~d~~~~~~~~~~~~~~~~~v~~--iev~~~~~---~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~   76 (207)
T 3ajx_A            2 KLQVAIDLLSTEAALELAGKVAEYVDI--IELGTPLI---KAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKA   76 (207)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHGGGCSE--EEECHHHH---HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHT
T ss_pred             eEEEEeCCCCHHHHHHHHHHhhccCCE--EEECcHHH---HhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhC
Confidence            3478999999999998887664  488  55699876   6799999999999877999999999999 88889999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC-CC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK-PK  165 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~-p~  165 (277)
                      |+|.+++|.+..+.                                          ......+.+++.|.+.|+.+. +.
T Consensus        77 Gad~v~vh~~~~~~------------------------------------------~~~~~~~~~~~~g~~~gv~~~s~~  114 (207)
T 3ajx_A           77 GADLVTVLGSADDS------------------------------------------TIAGAVKAAQAHNKGVVVDLIGIE  114 (207)
T ss_dssp             TCSEEEEETTSCHH------------------------------------------HHHHHHHHHHHHTCEEEEECTTCS
T ss_pred             CCCEEEEeccCChH------------------------------------------HHHHHHHHHHHcCCceEEEEecCC
Confidence            99999999876530                                          334556667766777666552 12


Q ss_pred             CCHHhHHHHHh-hcCce-EEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600        166 TPVDVIAEYIE-SADLV-LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       166 t~~~~i~~~i~-~~d~v-l~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~  240 (277)
                      +|-+.+..+.+ .+|++ +.|++.|+++|+++.+   ++++++++.  ++.+.++|||+.+|+.++.++|+++   |+..
T Consensus       115 ~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~---~~i~~~~~~--~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI  189 (207)
T 3ajx_A          115 DKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLN---GLLAAGEKA--RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAI  189 (207)
T ss_dssp             SHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTH---HHHHHHHHH--TSCEEEESSCCGGGHHHHHHTTCSEEEESHHH
T ss_pred             ChHHHHHHHHHhCCCEEEEEecccccccCCCchH---HHHHHhhCC--CCCEEEECCcCHHHHHHHHHcCCCEEEEeeec
Confidence            22222222222 37888 8899998888887665   677777654  5679999999999999999999996   7788


Q ss_pred             ccc-CHHHHHHHHHhh
Q psy11600        241 FMQ-DMMPKVKWLREN  255 (277)
Q Consensus       241 F~~-~~~~kI~~l~~~  255 (277)
                      |.. +..+.++++++.
T Consensus       190 ~~~~dp~~~~~~~~~~  205 (207)
T 3ajx_A          190 YGAADPAAAAKELRAA  205 (207)
T ss_dssp             HTSSSHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHH
Confidence            874 777788887753

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=99.84  E-value=8.7e-21  Score=167.73  Aligned_cols=163  Identities=26%  Similarity=0.381  Sum_probs=124.0

Q ss_pred             eeeeeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600         66 FFETHMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMAD  128 (277)
Q Consensus        66 ~~d~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~  128 (277)
                      .+...++..|..   ++++.+.++|+||+  |++++||        |+.+++++|+.+..++++      |++|++.+++
T Consensus         6 ~i~psila~D~~~l~~~i~~~~~~Gad~i--hldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~   83 (230)
T 1tqj_A            6 VVAPSILSADFSRLGEEIKAVDEAGADWI--HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAK   83 (230)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEE--EEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHH
T ss_pred             EEEEEeeecCHhHHHHHHHHHHHcCCCEE--EEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHH
Confidence            466777877754   45778888899999  8888876        789999999998766553      8999999999


Q ss_pred             cCCCeEEeecCCCCCh--HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHH
Q psy11600        129 ANVDQYTFHVEPVDNV--PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWL  206 (277)
Q Consensus       129 ~g~d~it~H~E~~~~~--~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l  206 (277)
                      +|||.+|||.|   +.  ....+                     ..+.++..++.++++++|.|+.           +.+
T Consensus        84 aGadgv~vh~e---~~~~~~~~~---------------------~~~~i~~~g~~~gv~~~p~t~~-----------e~~  128 (230)
T 1tqj_A           84 AGADIISVHVE---HNASPHLHR---------------------TLCQIRELGKKAGAVLNPSTPL-----------DFL  128 (230)
T ss_dssp             HTCSEEEEECS---TTTCTTHHH---------------------HHHHHHHTTCEEEEEECTTCCG-----------GGG
T ss_pred             cCCCEEEECcc---cccchhHHH---------------------HHHHHHHcCCcEEEEEeCCCcH-----------HHH
Confidence            99999999987   32  22333                     3445677888999999999973           222


Q ss_pred             HhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600        207 RENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       207 ~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +++.+..|+...|+++           ||||||.|.+..++|++++|+..    .++.|+||||||.+|+++++
T Consensus       129 ~~~~~~~D~v~~msv~-----------pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~  191 (230)
T 1tqj_A          129 EYVLPVCDLILIMSVN-----------PGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVL  191 (230)
T ss_dssp             TTTGGGCSEEEEESSC-----------C----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHH
T ss_pred             HHHHhcCCEEEEEEec-----------cccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHH
Confidence            3333456666655554           99999999999999999999864    36889999999999998875

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=99.82  E-value=5.8e-20  Score=165.81  Aligned_cols=190  Identities=16%  Similarity=0.192  Sum_probs=158.1

Q ss_pred             ceEeeeccccCc--ccHHHHHHHHHHcCCCEEEEec------cccccccC-----------CCCCHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDL--SNLHSESQNLLDSGADYLHLDV------MDGTFVPN-----------LTFGHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~--~~l~~~~~~l~~~~~~~~h~Di------mDg~fvp~-----------~~~g~~~v~~l~~~~~~~~   66 (277)
                      ..+.|+|+++|+  .++.+.++.|++.|+|++|+|+      |||+|++|           +.++++.++++|+.++++|
T Consensus        17 ~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~P   96 (268)
T 1qop_A           17 GAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIP   96 (268)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSC
T ss_pred             ceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            458999999999  7888999999999999999999      99999997           5677899999998767777


Q ss_pred             eeeeeec-cCc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         67 FETHMMV-QNP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        67 ~d~Hlmv-~~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                        +|+|+ .||      +++++.+.++|+|.+++|-...+                                        
T Consensus        97 --v~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e----------------------------------------  134 (268)
T 1qop_A           97 --IGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVE----------------------------------------  134 (268)
T ss_dssp             --EEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGG----------------------------------------
T ss_pred             --EEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHH----------------------------------------
Confidence              78886 566      77899999999999988844332                                        


Q ss_pred             CCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC-ceEEEEecCCCCCc--hhhhhhhhhHHHHHhhCCCccEE
Q psy11600        140 PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD-LVLIMTVEPGFGGQ--KFMQDMMPKVKWLRENYPTLNIE  216 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d-~vl~mav~Pgt~gq--~~~~~~l~kI~~l~~~~~~~~i~  216 (277)
                         ......+.+++.|++...-++|.++.+.+..+....+ ++..|+++ |+.|+  ++.++..++++++++.. ++.+.
T Consensus       135 ---~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~-G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~  209 (268)
T 1qop_A          135 ---ESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRS-GVTGAENRGALPLHHLIEKLKEYH-AAPAL  209 (268)
T ss_dssp             ---GCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSS-SCCCSSSCC--CCHHHHHHHHHTT-CCCEE
T ss_pred             ---HHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecC-CcCCCccCCCchHHHHHHHHHhcc-CCcEE
Confidence               4567778889888887888899999998888887765 88888877 88888  67788889999998865 67899


Q ss_pred             EeCCCC-cCcHHHHHHccCCC---CCcccc
Q psy11600        217 VDGGVG-PNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       217 vdGgV~-~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      ++|||+ .+++.++..+|++.   |+..+.
T Consensus       210 vggGI~t~e~~~~~~~agAD~vVVGSai~~  239 (268)
T 1qop_A          210 QGFGISSPEQVSAAVRAGAAGAISGSAIVK  239 (268)
T ss_dssp             EESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             EECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            999998 89999988999995   665554

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=99.79  E-value=8.4e-19  Score=154.37  Aligned_cols=168  Identities=32%  Similarity=0.481  Sum_probs=129.2

Q ss_pred             CCeeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHH
Q psy11600         64 KAFFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPM  126 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~  126 (277)
                      ...+...+|..|+.+   .++.+.++|+|++  |++++||        |++.++++|+.+..++++      |.+|++.+
T Consensus         6 ~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i--~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~   83 (228)
T 1h1y_A            6 AAKIAPSMLSSDFANLAAEADRMVRLGADWL--HMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPL   83 (228)
T ss_dssp             CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEE--EEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHH
T ss_pred             CCeEEEEeeeCCHHHHHHHHHHHHHcCCCEE--EEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHH
Confidence            345677888887544   5777888899999  8887765        689999999988655543      88999999


Q ss_pred             HhcCCCeEEeecCCCCChHHH-HHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQV-IRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW  205 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~-~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~  205 (277)
                      .++|+|.++||.|   ...+. .+.+++                     ++..++.++++++|.|+.        +.++.
T Consensus        84 ~~agad~v~vH~~---~~~~~~~~~~~~---------------------i~~~g~~igv~~~p~t~~--------e~~~~  131 (228)
T 1h1y_A           84 AKAGASGFTFHIE---VSRDNWQELIQS---------------------IKAKGMRPGVSLRPGTPV--------EEVFP  131 (228)
T ss_dssp             HHHTCSEEEEEGG---GCTTTHHHHHHH---------------------HHHTTCEEEEEECTTSCG--------GGGHH
T ss_pred             HHcCCCEEEECCC---CcccHHHHHHHH---------------------HHHcCCCEEEEEeCCCCH--------HHHHH
Confidence            9999999999999   76665 554543                     455677788999999873        22333


Q ss_pred             HHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        206 LRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       206 l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.+.....+....|+++           ||+|||.|.+..+++++++|+..+++.|.||||||.+|+++++
T Consensus       132 ~~~~~~~~d~vl~~sv~-----------pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~  191 (228)
T 1h1y_A          132 LVEAENPVELVLVMTVE-----------PGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA  191 (228)
T ss_dssp             HHHSSSCCSEEEEESSC-----------TTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHH
T ss_pred             HHhcCCCCCEEEEEeec-----------CCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHH
Confidence            32210045666655554           9999999999999999999998767889999999999998764

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.78  E-value=2.9e-19  Score=157.13  Aligned_cols=196  Identities=12%  Similarity=0.108  Sum_probs=150.7

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeeccCcHHhHHHHHhcC
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      +=++|+|+.+++++++.+++.+-...|++||++.|   ++||++.|++||+.+|  .+++|+|+| ..|..+.+.+.++|
T Consensus         7 ~livAlD~~~~~~a~~~~~~~~~~~~~ikvg~~lf---~~~G~~~v~~l~~~~p~~~iflDlKl~-Dip~t~~~~~~~~G   82 (221)
T 3exr_A            7 NLQVALDHSNLKGAITAAVSVGNEVDVIEAGTVCL---LQVGSELVEVLRSLFPDKIIVADTKCA-DAGGTVAKNNAVRG   82 (221)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHH---HHHCTHHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHHHHTTT
T ss_pred             CEEEEeCCCCHHHHHHHHHhhCCCceEEEECHHHH---HhcCHHHHHHHHHhCCCCcEEEEEEee-ccHHHHHHHHHHcC
Confidence            34789999999999999999884445577799999   5899999999998764  489999999 78999999999999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhC---CccceeeCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG---MKVGLAIKP  164 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g---~~~g~~i~p  164 (277)
                      +|++|+|.+...   .                                       .+....+.+++.|   .+.++.+.+
T Consensus        83 ad~vtVH~~~g~---~---------------------------------------~l~~a~~~~~~~g~~~~~~~Vt~lt  120 (221)
T 3exr_A           83 ADWMTCICSATI---P---------------------------------------TMKAARKAIEDINPDKGEIQVELYG  120 (221)
T ss_dssp             CSEEEEETTSCH---H---------------------------------------HHHHHHHHHHHHCTTTCEEEEECCS
T ss_pred             CCEEEEeccCCH---H---------------------------------------HHHHHHHHHHhcCCCcceEEEEEcC
Confidence            999999987543   1                                       2445566677766   567999999


Q ss_pred             CCCHHhHHHHHh-hc-CceEEEEecCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        165 KTPVDVIAEYIE-SA-DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       165 ~t~~~~i~~~i~-~~-d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      .++.+.+.++++ .+ +.++-++..++..|+.   ...+.++.+++.. +++.++|||||+..|.+.+.++|+++   |+
T Consensus       121 s~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv---~s~~e~~~ir~~~~~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~  197 (221)
T 3exr_A          121 DWTYDQAQQWLDAGISQAIYHQSRDALLAGET---WGEKDLNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGR  197 (221)
T ss_dssp             SCCHHHHHHHHHTTCCEEEEECCHHHHHHTCC---CCHHHHHHHHHHHHHTCEEEEESSCCGGGGGGGTTCCCSEEEECH
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHHhcCCCccc---cCHHHHHHHHHhhcCCceEEEECCCCHHHHHHHHHCCCCEEEECc
Confidence            999988877765 44 3455566666544432   1133455555543 46778999999999999999999997   77


Q ss_pred             cccc-cCHHHHHHHHHh
Q psy11600        239 QKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       239 q~F~-~~~~~kI~~l~~  254 (277)
                      ..|. ++..+.++++++
T Consensus       198 ~I~~a~dp~~a~~~~~~  214 (221)
T 3exr_A          198 GITEAKNPAGAARAFKD  214 (221)
T ss_dssp             HHHTSSSHHHHHHHHHH
T ss_pred             hhhCCCCHHHHHHHHHH
Confidence            8886 467777777665

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=99.73  E-value=3.4e-17  Score=146.76  Aligned_cols=189  Identities=16%  Similarity=0.217  Sum_probs=150.5

Q ss_pred             ceEeeeccccCc--ccHHHHHHHHHHcCCCEEEEe------cccccccc-----------CCCCCHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDL--SNLHSESQNLLDSGADYLHLD------VMDGTFVP-----------NLTFGHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~--~~l~~~~~~l~~~~~~~~h~D------imDg~fvp-----------~~~~g~~~v~~l~~~~~~~~   66 (277)
                      ..+.|++++.|+  .++.+.++.+++.|+|++|++      +|||+|++           ++.++.+.++++|+. +++|
T Consensus        18 ~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~-~~~P   96 (262)
T 1rd5_A           18 TAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE-LSCP   96 (262)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG-CSSC
T ss_pred             ceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCC
Confidence            458999999999  678888999999999999999      69999997           566678899999986 7777


Q ss_pred             eeeeeec-cCcHH--hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCC
Q psy11600         67 FETHMMV-QNPQQ--WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDN  143 (277)
Q Consensus        67 ~d~Hlmv-~~p~~--~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~  143 (277)
                        +|+|. .||..  .++.+.++|+|.+++|-...+                                           .
T Consensus        97 --v~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~-------------------------------------------~  131 (262)
T 1rd5_A           97 --VVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYV-------------------------------------------A  131 (262)
T ss_dssp             --EEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTT-------------------------------------------T
T ss_pred             --EEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChh-------------------------------------------h
Confidence              67785 45433  356688899999876633322                                           5


Q ss_pred             hHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEEecCCCCCc--hhhhhhhhhHHHHHhhCCCccEEEeCC
Q psy11600        144 VPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMTVEPGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGG  220 (277)
Q Consensus       144 ~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~mav~Pgt~gq--~~~~~~l~kI~~l~~~~~~~~i~vdGg  220 (277)
                      ..+..+.+++.|++....+.|.++.+.+..+.... +++.++++ +|+.|+  .+.+..++.++++++.. ++.+.++||
T Consensus       132 ~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~-~G~tG~~~~~~~~~~~~i~~v~~~~-~~pI~vgGG  209 (262)
T 1rd5_A          132 AHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSV-NGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFG  209 (262)
T ss_dssp             HHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECS-SCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESC
T ss_pred             HHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecC-CCCCCCCcCCCchHHHHHHHHHhhc-CCeEEEECC
Confidence            66777888888988899999999988877776554 47888886 887777  56667778888888764 678999999


Q ss_pred             CC-cCcHHHHHHccCCC---CCcccc
Q psy11600        221 VG-PNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       221 V~-~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      |+ .+++.++.++|++.   |+..+.
T Consensus       210 I~~~e~~~~~~~~GAdgvvVGSai~~  235 (262)
T 1rd5_A          210 ISKPEHVKQIAQWGADGVIIGSAMVR  235 (262)
T ss_dssp             CCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             cCCHHHHHHHHHcCCCEEEEChHHHh
Confidence            99 99999999999995   665443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=99.66  E-value=5.2e-16  Score=140.02  Aligned_cols=190  Identities=17%  Similarity=0.199  Sum_probs=151.9

Q ss_pred             ceEeeeccccCc--ccHHHHHHHHHHcCCCEEEEe------ccccccccCCC-----CC------HHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDL--SNLHSESQNLLDSGADYLHLD------VMDGTFVPNLT-----FG------HPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~--~~l~~~~~~l~~~~~~~~h~D------imDg~fvp~~~-----~g------~~~v~~l~~~~~~~~   66 (277)
                      .-+.|++++.|+  ..+.+.++.|++.|+|++|++      ++||+++++.+     .|      .+.++++|+.++++|
T Consensus        18 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~P   97 (267)
T 3vnd_A           18 GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMP   97 (267)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCC
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            358999999999  789999999999999999999      99999999866     56      689999998657777


Q ss_pred             eeeeeecc-Cc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         67 FETHMMVQ-NP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        67 ~d~Hlmv~-~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                        +|+|.- ||      +++++.+.++|+|.+.+|-.+.+                                        
T Consensus        98 --ivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~e----------------------------------------  135 (267)
T 3vnd_A           98 --IGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVE----------------------------------------  135 (267)
T ss_dssp             --EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGG----------------------------------------
T ss_pred             --EEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHh----------------------------------------
Confidence              778865 77      77899999999999877733322                                        


Q ss_pred             CCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEE
Q psy11600        140 PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                         ...+..+.+++.|+....-+.|.|+.+.+..+.+.. +++..+++.+.|+.+. +.+++.+.++++++.. ++-+.+
T Consensus       136 ---e~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~-~~pv~v  211 (267)
T 3vnd_A          136 ---ESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN-APPPLL  211 (267)
T ss_dssp             ---GCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT-CCCEEE
T ss_pred             ---hHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc-CCCEEE
Confidence               456777888899988888899999999999998887 5888889998888775 5667788888888764 578999


Q ss_pred             eCCCC-cCcHHHHHHccCCC---CCccc
Q psy11600        218 DGGVG-PNTIDECAKCLTGF---GGQKF  241 (277)
Q Consensus       218 dGgV~-~~tv~~~~~~gpg~---ggq~F  241 (277)
                      .|||+ .+++....++|++.   |+..+
T Consensus       212 GfGI~~~e~~~~~~~~gADgvVVGSaiv  239 (267)
T 3vnd_A          212 GFGIAEPEQVRAAIKAGAAGAISGSAVV  239 (267)
T ss_dssp             CSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             ECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence            99995 88888788888885   55443

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.62  E-value=1.1e-15  Score=135.05  Aligned_cols=173  Identities=12%  Similarity=0.134  Sum_probs=129.3

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+.+++.|+|++|++.+||.|.++..+  +.++++++. +++|+.+|.|+.+|++ ++.+.++|||.+++|.+..
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~--~~i~~i~~~-~~ipv~v~ggI~~~~~-~~~~l~~Gad~V~lg~~~l  108 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR--ALIAEVAQA-MDIKVELSGGIRDDDT-LAAALATGCTRVNLGTAAL  108 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH--HHHHHHHHH-CSSEEEEESSCCSHHH-HHHHHHTTCSEEEECHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhcCCChH--HHHHHHHHh-cCCcEEEECCcCCHHH-HHHHHHcCCCEEEECchHh
Confidence            55567788899999999999999999999888  899999986 7999999999999986 8889999999998888765


Q ss_pred             CCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC-------------
Q psy11600         99 DNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK-------------  165 (277)
Q Consensus        99 d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~-------------  165 (277)
                      .                                           ++..+.+.++..|.+..+++++.             
T Consensus       109 ~-------------------------------------------~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~  145 (244)
T 1vzw_A          109 E-------------------------------------------TPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDG  145 (244)
T ss_dssp             H-------------------------------------------CHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCC
T ss_pred             h-------------------------------------------CHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCC
Confidence            5                                           44555666666665556666654             


Q ss_pred             -CCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHc---cCCC---
Q psy11600        166 -TPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKC---LTGF---  236 (277)
Q Consensus       166 -t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~---gpg~---  236 (277)
                       ++++....+.+. +|.+++++++|+..++.+..+.++++   ++.. ++.+..+|||+- +++..+.++   |++.   
T Consensus       146 ~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i---~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v  221 (244)
T 1vzw_A          146 GDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNV---CAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV  221 (244)
T ss_dssp             CBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHH---HHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred             CCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHH---HHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence             556655666665 89999999999876666654444444   4332 578999999996 999999998   7774   


Q ss_pred             CCcccc
Q psy11600        237 GGQKFM  242 (277)
Q Consensus       237 ggq~F~  242 (277)
                      |+..|.
T Consensus       222 G~al~~  227 (244)
T 1vzw_A          222 GKALYA  227 (244)
T ss_dssp             CHHHHT
T ss_pred             eHHHHc
Confidence            554444

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.61  E-value=4.5e-15  Score=128.82  Aligned_cols=163  Identities=21%  Similarity=0.357  Sum_probs=119.4

Q ss_pred             eeeeeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600         66 FFETHMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMAD  128 (277)
Q Consensus        66 ~~d~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~  128 (277)
                      .+...++..|+.   +.++.+.++|++++  |++.+||        |+..++++|+.+..++++      |.++++.+.+
T Consensus         5 ~~~~~i~a~D~~~~~~~~~~~~~~G~~~i--~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~   82 (220)
T 2fli_A            5 KIAPSILAADYANFASELARIEETDAEYV--HIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQ   82 (220)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCCEE--EEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHH
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHHcCCCEE--EEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHH
Confidence            356667777764   45777888999998  6665544        699999999987555443      6778999999


Q ss_pred             cCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600        129 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE  208 (277)
Q Consensus       129 ~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~  208 (277)
                      +|+|.+++|.+   ......+.++                     .++..+..++.+++|.|+.+           .++.
T Consensus        83 ~gad~v~vh~~---~~~~~~~~~~---------------------~~~~~g~~i~~~~~~~t~~e-----------~~~~  127 (220)
T 2fli_A           83 AGADIMTIHTE---STRHIHGALQ---------------------KIKAAGMKAGVVINPGTPAT-----------ALEP  127 (220)
T ss_dssp             HTCSEEEEEGG---GCSCHHHHHH---------------------HHHHTTSEEEEEECTTSCGG-----------GGGG
T ss_pred             cCCCEEEEccC---ccccHHHHHH---------------------HHHHcCCcEEEEEcCCCCHH-----------HHHH
Confidence            99999999998   6544444443                     34445677889999987631           2223


Q ss_pred             hCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC----CCCeEEEeCCCCccCHHHhh
Q psy11600        209 NYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~----~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.+..+..+-     +++      +||++|+.|.+..+++++++|+..    .++.|.++||||++|++++.
T Consensus       128 ~~~~~d~vl~-----~~~------~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~  188 (220)
T 2fli_A          128 LLDLVDQVLI-----MTV------NPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACY  188 (220)
T ss_dssp             GTTTCSEEEE-----ESS------CTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHH
T ss_pred             HHhhCCEEEE-----EEE------CCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHH
Confidence            3344565543     333      599999999998889998888754    26779999999999998764

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=99.57  E-value=3.8e-14  Score=124.21  Aligned_cols=166  Identities=22%  Similarity=0.282  Sum_probs=120.5

Q ss_pred             CeeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCCC--------CCHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600         65 AFFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVD--------NVPQVIRQIKEAGMKVGQV------LQDWIEPMA  127 (277)
Q Consensus        65 ~~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d--------~g~~~i~~i~~~~~~~~d~------p~~~i~~~~  127 (277)
                      ..+...++..++.+   .++.+.++|++++  |++.+|        .+++.++++|+.+..++++      |.++++.+.
T Consensus        11 ~~i~p~i~a~d~~~~~~~i~~~~~~G~d~i--~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~   88 (230)
T 1rpx_A           11 IIVSPSILSANFSKLGEQVKAIEQAGCDWI--HVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFI   88 (230)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCCE--EEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHH
T ss_pred             eEEEEEeecCCHHHHHHHHHHHHHCCCCEE--EEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHH
Confidence            35677888888764   4777888999999  666443        3789999999987544432      778999999


Q ss_pred             hcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHH
Q psy11600        128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR  207 (277)
Q Consensus       128 ~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~  207 (277)
                      ++|+|.+++|.|   ...                   +.....+...++..+..++++++|+|+.+           .+.
T Consensus        89 ~~Gad~v~vh~~---~~~-------------------~~~~~~~~~~~~~~g~~ig~~~~p~t~~e-----------~~~  135 (230)
T 1rpx_A           89 KAGADIVSVHCE---QSS-------------------TIHLHRTINQIKSLGAKAGVVLNPGTPLT-----------AIE  135 (230)
T ss_dssp             HTTCSEEEEECS---TTT-------------------CSCHHHHHHHHHHTTSEEEEEECTTCCGG-----------GGT
T ss_pred             HcCCCEEEEEec---Ccc-------------------chhHHHHHHHHHHcCCcEEEEeCCCCCHH-----------HHH
Confidence            999999999975   211                   01112233445566788899999998632           222


Q ss_pred             hhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC----CCeEEEeCCCCccCHHHhh
Q psy11600        208 ENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       208 ~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~----~~~I~VDGGI~~~~~~~~~  276 (277)
                      .+....+..+.+++           +||++|+.|.+..+++++++|+..+    ++.+.++||||++|++++.
T Consensus       136 ~~~~~~d~vl~~~~-----------~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~  197 (230)
T 1rpx_A          136 YVLDAVDLVLIMSV-----------NPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVI  197 (230)
T ss_dssp             TTTTTCSEEEEESS-----------CTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHH
T ss_pred             HHHhhCCEEEEEEE-----------cCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHH
Confidence            33344566554343           5999999999999999999887543    6789999999999998764

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.57  E-value=9.5e-15  Score=128.67  Aligned_cols=181  Identities=13%  Similarity=0.141  Sum_probs=134.0

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+.+++.|++++|++.||+.|.++..+  +.++++++. +++|+.+|.++.+|++ ++.+.++|||.+++|.+..
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~--~~i~~i~~~-~~ipv~v~ggi~~~~~-~~~~l~~Gad~V~lg~~~l  107 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH--ELLAEVVGK-LDVQVELSGGIRDDES-LAAALATGCARVNVGTAAL  107 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH--HHHHHHHHH-CSSEEEEESSCCSHHH-HHHHHHTTCSEEEECHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCcccccCCChH--HHHHHHHHh-cCCcEEEECCCCCHHH-HHHHHHcCCCEEEECchHh
Confidence            45567778899999999999999999999888  899999986 7999999999999985 8888999999998887765


Q ss_pred             CCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC-------------
Q psy11600         99 DNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK-------------  165 (277)
Q Consensus        99 d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~-------------  165 (277)
                      .                                           ++..+.+.++..|.+..+++.+.             
T Consensus       108 ~-------------------------------------------~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~  144 (244)
T 2y88_A          108 E-------------------------------------------NPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGW  144 (244)
T ss_dssp             H-------------------------------------------CHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGG
T ss_pred             h-------------------------------------------ChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCc
Confidence            4                                           44445556666654455566554             


Q ss_pred             -----CCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHc---cCC
Q psy11600        166 -----TPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKC---LTG  235 (277)
Q Consensus       166 -----t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~---gpg  235 (277)
                           ++++.+..+.+. ++.+++++++++..++.+..+   .++++++. .++.+..+|||+- +++.++.++   |++
T Consensus       145 ~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~---~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad  220 (244)
T 2y88_A          145 ETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLD---LLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVE  220 (244)
T ss_dssp             TEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHH---HHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEE
T ss_pred             cCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHH---HHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCC
Confidence                 345555555555 788999999997665555433   34444443 3678999999996 999999988   666


Q ss_pred             C---CCcccc-cCHHHHHH
Q psy11600        236 F---GGQKFM-QDMMPKVK  250 (277)
Q Consensus       236 ~---ggq~F~-~~~~~kI~  250 (277)
                      .   |+..|. +..++.+.
T Consensus       221 ~v~vG~al~~~~~~~~~~~  239 (244)
T 2y88_A          221 GAIVGKALYARRFTLPQAL  239 (244)
T ss_dssp             EEEECHHHHTTSSCHHHHH
T ss_pred             EEEEcHHHHCCCcCHHHHH
Confidence            3   544444 33444443

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.54  E-value=8.5e-15  Score=126.95  Aligned_cols=149  Identities=10%  Similarity=0.046  Sum_probs=111.5

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhh--CCCcccc--------hhhhhHHHHhcCCCeEEee
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEA--GMKVGQV--------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~--~~~~~d~--------p~~~i~~~~~~g~d~it~H  137 (277)
                      ..++++.++.+.+.|.+++  |++++++     |+..|+++|+.  +..+.|+        |..|++.++++|||++|+|
T Consensus         8 ~~~l~~~~~~~~~~~~~~~--~~kv~~~~f~~~G~~~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~Gad~vtvh   85 (208)
T 2czd_A            8 VYEGERAIKIAKSVKDYIS--MIKVNWPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVH   85 (208)
T ss_dssp             CCSHHHHHHHHHHHGGGCS--EEEEEHHHHHHHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCHHHHHHHHHHhccccc--EEEecHHHHHhhCHHHHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhcCCCEEEEe
Confidence            3567888998989999988  9999876     99999999998  4444443        8999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhh-hhhHHHHHhhCCCccEE
Q psy11600        138 VEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDM-MPKVKWLRENYPTLNIE  216 (277)
Q Consensus       138 ~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~-l~kI~~l~~~~~~~~i~  216 (277)
                      .|      .-...                    +. .+.+..   +++++|+|+.....+ . .+.++.+.         
T Consensus        86 ~~------~g~~~--------------------i~-~~~~~~---gv~vl~~t~~~~~~~-~~~~~v~~~~---------  125 (208)
T 2czd_A           86 TF------VGRDS--------------------VM-AVKELG---EIIMVVEMSHPGALE-FINPLTDRFI---------  125 (208)
T ss_dssp             ST------TCHHH--------------------HH-HHHTTS---EEEEECCCCSGGGGT-TTGGGHHHHH---------
T ss_pred             cc------CCHHH--------------------HH-HHHHhC---CcEEEEecCCcchhh-HHHHHHHHHH---------
Confidence            87      22121                    22 223333   889999998654433 3 45555542         


Q ss_pred             EeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC-CCeEEEeCCCCcc--CHHHhh
Q psy11600        217 VDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPN--TIDECA  276 (277)
Q Consensus       217 vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~-~~~I~VDGGI~~~--~~~~~~  276 (277)
                            .|++      +||++||.|.+...++++++|+..+ .+.| |||||+.+  |+.++.
T Consensus       126 ------~~a~------~~G~~G~~~~~~~~~~i~~lr~~~~~~~~i-v~gGI~~~g~~~~~~~  175 (208)
T 2czd_A          126 ------EVAN------EIEPFGVIAPGTRPERIGYIRDRLKEGIKI-LAPGIGAQGGKAKDAV  175 (208)
T ss_dssp             ------HHHH------HHCCSEEECCCSSTHHHHHHHHHSCTTCEE-EECCCCSSTTHHHHHH
T ss_pred             ------HHHH------HhCCcEEEECCCChHHHHHHHHhCCCCeEE-EECCCCCCCCCHHHHH
Confidence                  2344      6999999999998999999998765 3656 99999998  666653

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=99.45  E-value=5.4e-14  Score=124.06  Aligned_cols=194  Identities=15%  Similarity=0.093  Sum_probs=113.3

Q ss_pred             eeccccCcccHHHHHHHHHHcC--CCEEEEeccccccccCCCCCHHHHHHHHh-cCCCCeeeeeeeccCc---HHhHHHH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSG--ADYLHLDVMDGTFVPNLTFGHPVVKCLRN-KIPKAFFETHMMVQNP---QQWIEPM   83 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~--~~~~h~DimDg~fvp~~~~g~~~v~~l~~-~~~~~~~d~Hlmv~~p---~~~i~~l   83 (277)
                      +=|+|+|+.+++++++.+++.+  ++|+|+  +.+.|   ++||++.+++||+ .-..+++|+|+| .-|   ..+++.+
T Consensus        14 ~lilAlD~~~~~~a~~~v~~~~~~v~~~Kv--g~~lf---~~~G~~~v~~l~~~~g~~v~lD~Kl~-DipnTv~~~~~~~   87 (228)
T 3m47_A           14 RLILAMDLMNRDDALRVTGEVREYIDTVKI--GYPLV---LSEGMDIIAEFRKRFGCRIIADFKVA-DIPETNEKICRAT   87 (228)
T ss_dssp             GEEEECCCCSHHHHHHHHHTTTTTCSEEEE--EHHHH---HHHCTHHHHHHHHHHCCEEEEEEEEC-SCHHHHHHHHHHH
T ss_pred             CeEEEeCCCCHHHHHHHHHHcCCcccEEEE--cHHHH---HhcCHHHHHHHHhcCCCeEEEEEeec-ccHhHHHHHHHHH
Confidence            4589999999999999999887  899999  44677   5899999999998 445789999999 344   4499999


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee-e
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA-I  162 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~-i  162 (277)
                      .++|+|++|+|.+..   .+.++...                                       +.+++.|.  ++- +
T Consensus        88 ~~~gad~vtvh~~~G---~~~l~~~~---------------------------------------~~~~~~g~--~v~vL  123 (228)
T 3m47_A           88 FKAGADAIIVHGFPG---ADSVRACL---------------------------------------NVAEEMGR--EVFLL  123 (228)
T ss_dssp             HHTTCSEEEEESTTC---HHHHHHHH---------------------------------------HHHHHHTC--EEEEE
T ss_pred             HhCCCCEEEEeccCC---HHHHHHHH---------------------------------------HHHHhcCC--CeEEE
Confidence            999999999998753   33333222                                       11111110  111 1


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCCCcC--cHHHHHHccCCC---
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPN--TIDECAKCLTGF---  236 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV~~~--tv~~~~~~gpg~---  236 (277)
                      ..-++.+....+-+.++.+.-|+.++|..|.-.-....+.++.+++..+. +.+ |++||+..  |. ++.++|+++   
T Consensus       124 t~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVv  201 (228)
T 3m47_A          124 TEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIV  201 (228)
T ss_dssp             CCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEE
T ss_pred             EeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCCChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEE
Confidence            11111100000000001111122233322211100012345666665554 655 88998886  77 788899996   


Q ss_pred             CCcccc-cCHHHHHHHHHhh
Q psy11600        237 GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       237 ggq~F~-~~~~~kI~~l~~~  255 (277)
                      |+..|. ++..+.++++++.
T Consensus       202 Gr~I~~a~dp~~a~~~~~~~  221 (228)
T 3m47_A          202 GRSIYLADNPAAAAAGAIES  221 (228)
T ss_dssp             CHHHHTSSCHHHHHHHHHHH
T ss_pred             CHHHhCCCCHHHHHHHHHHH
Confidence            777777 5778888887764

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=99.39  E-value=3.2e-12  Score=111.26  Aligned_cols=181  Identities=9%  Similarity=0.098  Sum_probs=116.9

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM   83 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l   83 (277)
                      +.|+||.++.|  ++++ ++.+.+.|++++|+|.||      ++++  .+.++++++. + .+.+ |+|+.+   +++.+
T Consensus        20 ~~It~~~~~~~--~l~~-~~~~~~~G~~~v~lr~~~------~~~~~~~~~~~~l~~~-~-~~~~-~l~v~~---~~~~a   84 (221)
T 1yad_A           20 HAITDDSKPVE--ELAR-IIITIQNEVDFIHIRERS------KSAADILKLLDLIFEG-G-IDKR-KLVMNG---RVDIA   84 (221)
T ss_dssp             EEECCSCSCHH--HHHH-HHHHHGGGCSEEEECCTT------SCHHHHHHHHHHHHHT-T-CCGG-GEEEES---CHHHH
T ss_pred             EEEECCCcCcc--hHHH-HHHHHHCCCCEEEEccCC------CCHHHHHHHHHHHHHh-c-CcCC-eEEEeC---hHHHH
Confidence            45889999886  5644 788888999999999887      3444  6788999874 4 3566 999873   67888


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      .++|+|.+|+|.+...                                            . ...+.+.. |++.|+.+ 
T Consensus        85 ~~~gad~v~l~~~~~~--------------------------------------------~-~~~~~~~~-~~~ig~sv-  117 (221)
T 1yad_A           85 LFSTIHRVQLPSGSFS--------------------------------------------P-KQIRARFP-HLHIGRSV-  117 (221)
T ss_dssp             HTTTCCEEEECTTSCC--------------------------------------------H-HHHHHHCT-TCEEEEEE-
T ss_pred             HHcCCCEEEeCCCccC--------------------------------------------H-HHHHHHCC-CCEEEEEc-
Confidence            9999999988865322                                            1 11111111 33333333 


Q ss_pred             CCCCHHhHHHH-HhhcCceEEEEecCCCCCchh---hhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---
Q psy11600        164 PKTPVDVIAEY-IESADLVLIMTVEPGFGGQKF---MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---  236 (277)
Q Consensus       164 p~t~~~~i~~~-i~~~d~vl~mav~Pgt~gq~~---~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---  236 (277)
                       .++ +..... ...+|+++++.+-|+   +.+   .+.-++.++++++.. ++.+.++|||+.+++.++.++|++.   
T Consensus       118 -~t~-~~~~~a~~~gaD~i~~~~~f~~---~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~v  191 (221)
T 1yad_A          118 -HSL-EEAVQAEKEDADYVLFGHVFET---DCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLRDVKQAGADGIAV  191 (221)
T ss_dssp             -CSH-HHHHHHHHTTCSEEEEECCC-------------CHHHHHHHHHHHC-CSCEEEESSCCGGGHHHHHHTTCSEEEE
T ss_pred             -CCH-HHHHHHHhCCCCEEEECCcccc---CCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCCEEEE
Confidence             222 222222 334677766554222   111   122345666665544 6779999999999999999999985   


Q ss_pred             CCcccc-cCHHHHHHHHHh
Q psy11600        237 GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 ggq~F~-~~~~~kI~~l~~  254 (277)
                      |+..|. ++..++++++++
T Consensus       192 gs~i~~~~d~~~~~~~~~~  210 (221)
T 1yad_A          192 MSGIFSSAEPLEAARRYSR  210 (221)
T ss_dssp             SHHHHTSSSHHHHHHHHHH
T ss_pred             hHHhhCCCCHHHHHHHHHH
Confidence            666665 366788887765

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.38  E-value=6e-13  Score=118.40  Aligned_cols=161  Identities=11%  Similarity=0.039  Sum_probs=108.5

Q ss_pred             eeccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhh-CCCcccc-----hh---hhhHHHHhcCCCeEEeec
Q psy11600         71 MMVQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEA-GMKVGQV-----LQ---DWIEPMADANVDQYTFHV  138 (277)
Q Consensus        71 lmv~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~-~~~~~d~-----p~---~~i~~~~~~g~d~it~H~  138 (277)
                      +=..++++.++.+.+.|  ++|+=+|+|.+ .+|+.+|+++|+. +..+.|+     |.   .|++.++++|||++|||.
T Consensus        21 lD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~~~~G~~~v~~lr~~~~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~  100 (245)
T 1eix_A           21 LDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHA  100 (245)
T ss_dssp             ECCSSHHHHHHHHTTSCTTTCEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBG
T ss_pred             ECCCCHHHHHHHHHHhCccCcEEEEcHHHHHHhCHHHHHHHHHCCCcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEec
Confidence            33467888898888888  89966698875 5599999999998 4445554     65   599999999999999999


Q ss_pred             CCCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCc-e-EEEEecCCCCC-chhhhhh---hhhHHHHHhhCC
Q psy11600        139 EPVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL-V-LIMTVEPGFGG-QKFMQDM---MPKVKWLRENYP  211 (277)
Q Consensus       139 E~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~-v-l~mav~Pgt~g-q~~~~~~---l~kI~~l~~~~~  211 (277)
                      |   ...+ +.+.++.+                     +..+. . .+++++|.|+. .+.+.++   ++..+.+.    
T Consensus       101 ~---~g~~~l~~~~~~~---------------------~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~~~~d~Vl----  152 (245)
T 1eix_A          101 S---GGARMMTAAREAL---------------------VPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAE----  152 (245)
T ss_dssp             G---GCHHHHHHHHHTT---------------------GGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHH----
T ss_pred             c---CCHHHHHHHHHHH---------------------HHcCCCCCcEEEEEecCCCCHHHHHHhccCCCHHHHHH----
Confidence            9   6666 44444432                     22222 1 13455655442 1222222   12222221    


Q ss_pred             CccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCcc-----------CHHHhh
Q psy11600        212 TLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN-----------TIDECA  276 (277)
Q Consensus       212 ~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~-----------~~~~~~  276 (277)
                                 .|+.     ..|++|++.|...+.+ ++++|+..+...|+|||||+++           |+++++
T Consensus       153 -----------~ma~-----~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~  211 (245)
T 1eix_A          153 -----------RLAA-----LTQKCGLDGVVCSAQE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQAL  211 (245)
T ss_dssp             -----------HHHH-----HHHHTTCSEEECCGGG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHH
T ss_pred             -----------HHHH-----HHHHcCCCeEEeCHHH-HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHH
Confidence                       1221     1467778889988887 8888887655679999999999           887664

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=99.36  E-value=1.6e-11  Score=106.06  Aligned_cols=180  Identities=12%  Similarity=0.185  Sum_probs=120.9

Q ss_pred             CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeec-----cCcHH
Q psy11600          4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV-----QNPQQ   78 (277)
Q Consensus         4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv-----~~p~~   78 (277)
                      .+..|.|||++.|+.++.+.++.+.+.|++++|++.+|...       .+.++.+++.     +++|+++     .++ +
T Consensus         5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~-------~~~i~~i~~~-----~~~~l~vg~g~~~~~-~   71 (212)
T 2v82_A            5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQW-------EQSIPAIVDA-----YGDKALIGAGTVLKP-E   71 (212)
T ss_dssp             SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTH-------HHHHHHHHHH-----HTTTSEEEEECCCSH-H
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH-------HHHHHHHHHh-----CCCCeEEEeccccCH-H
Confidence            35679999999999999999999999999999999998322       2566666654     2345666     344 4


Q ss_pred             hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcc
Q psy11600         79 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV  158 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~  158 (277)
                      +++.+.++|+|.+  |....+                                             ..+.+.+++.|.+.
T Consensus        72 ~i~~a~~~Gad~V--~~~~~~---------------------------------------------~~~~~~~~~~g~~~  104 (212)
T 2v82_A           72 QVDALARMGCQLI--VTPNIH---------------------------------------------SEVIRRAVGYGMTV  104 (212)
T ss_dssp             HHHHHHHTTCCEE--ECSSCC---------------------------------------------HHHHHHHHHTTCEE
T ss_pred             HHHHHHHcCCCEE--EeCCCC---------------------------------------------HHHHHHHHHcCCCE
Confidence            7899999999999  654332                                             23334445444432


Q ss_pred             ceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCCCcCcHHHHHHccCCC-
Q psy11600        159 GLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKCLTGF-  236 (277)
Q Consensus       159 g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~~tv~~~~~~gpg~-  236 (277)
                      -.+  +.++.+.....-..+|++.   +.|+   +   ..-+++++++++..+ ++.+.++|||+.+++.++.++|++. 
T Consensus       105 ~~g--~~t~~e~~~a~~~G~d~v~---v~~t---~---~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv  173 (212)
T 2v82_A          105 CPG--CATATEAFTALEAGAQALK---IFPS---S---AFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGA  173 (212)
T ss_dssp             ECE--ECSHHHHHHHHHTTCSEEE---ETTH---H---HHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEE
T ss_pred             Eee--cCCHHHHHHHHHCCCCEEE---EecC---C---CCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEE
Confidence            222  2232222222223356554   3442   1   123567777777666 6889999999999999999999885 


Q ss_pred             --CCccccc-----CHHHHHHHHHh
Q psy11600        237 --GGQKFMQ-----DMMPKVKWLRE  254 (277)
Q Consensus       237 --ggq~F~~-----~~~~kI~~l~~  254 (277)
                        |+..|..     +..++++++++
T Consensus       174 ~vGsai~~~~~~~~d~~~~~~~l~~  198 (212)
T 2v82_A          174 GLGSDLYRAGQSVERTAQQAAAFVK  198 (212)
T ss_dssp             EECTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             EEChHHhCCCCCHHHHHHHHHHHHH
Confidence              6666664     56667777664

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.34  E-value=2.5e-12  Score=114.44  Aligned_cols=152  Identities=11%  Similarity=0.116  Sum_probs=105.2

Q ss_pred             ccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhhC-CCcccc-----hhh---hhHHHHhcCCCeEEeecCC
Q psy11600         73 VQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEAG-MKVGQV-----LQD---WIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        73 v~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~~-~~~~d~-----p~~---~i~~~~~~g~d~it~H~E~  140 (277)
                      ..++++.++.+.+.|  ++|+=+|+|.+ .+|+.+|+++|+.+ ..+.|+     |..   |++.++++|||++|||.| 
T Consensus        13 ~~~l~~~~~~v~~~~~~v~~~Kv~~d~~~~~G~~~v~~lr~~~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~~-   91 (246)
T 2yyu_A           13 FPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAA-   91 (246)
T ss_dssp             CSSHHHHHHHHGGGTTSCCEEEECHHHHHHHTHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGG-
T ss_pred             CCCHHHHHHHHHHhcccccEEEeCHHHHHHhCHHHHHHHHHCCCeEEEEeecccchHHHHHHHHHHHhcCCCEEEEECC-
Confidence            457788888888887  58866698875 55999999999984 445554     666   999999999999999999 


Q ss_pred             CCChHHH-HHHHHHhCCccceeeCCCCCHHhHHHHHhh---cCce--EEEEecCCCCC-chhh-hhh---hhhHHHHHhh
Q psy11600        141 VDNVPQV-IRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLV--LIMTVEPGFGG-QKFM-QDM---MPKVKWLREN  209 (277)
Q Consensus       141 ~~~~~~~-~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~---~d~v--l~mav~Pgt~g-q~~~-~~~---l~kI~~l~~~  209 (277)
                        ...+. .+.++.+                     ++   .+..  .+++++|.|+. .+.+ .++   ++..+.+.  
T Consensus        92 --~g~~~l~~~~~~~---------------------~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl--  146 (246)
T 2yyu_A           92 --GGRRMMEAAIEGL---------------------DAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVA--  146 (246)
T ss_dssp             --GCHHHHHHHHHHH---------------------HHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCSCHHHHHH--
T ss_pred             --CCHHHHHHHHHHH---------------------HhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCCCHHHHHH--
Confidence              66663 4555443                     22   2321  35789999874 1222 222   22222221  


Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC-CCeEEEeCCCCcc
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPN  270 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~-~~~I~VDGGI~~~  270 (277)
                                   .|+.     ..+++|++.|.....+ ++++|+..+ .+ |+|||||+++
T Consensus       147 -------------~ma~-----~~~~~G~~g~V~~~~e-i~~lr~~~~~~~-i~V~gGI~~~  188 (246)
T 2yyu_A          147 -------------HYAA-----LAKESGLDGVVCSANE-AAFIKERCGASF-LAVTPGIRFA  188 (246)
T ss_dssp             -------------HHHH-----HHHHHTCCEEECCHHH-HHHHHHHHCTTS-EEEECCCCCC
T ss_pred             -------------HHHH-----HHHHhCCCEEEeCHHH-HHHHHHhcCCCC-EEEeCCcCCC
Confidence                         1221     1367778889998887 999988654 45 9999999999

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.34  E-value=3.3e-12  Score=111.33  Aligned_cols=159  Identities=11%  Similarity=0.031  Sum_probs=109.9

Q ss_pred             eeccCcHHhHHHHHh--cCCCeEEEeccC-CCCCHHHHHHHHhh-CCC--cc-----cchhhhhHHHHhcCCCeEEeecC
Q psy11600         71 MMVQNPQQWIEPMAD--ANVDQYTFHVEP-VDNVPQVIRQIKEA-GMK--VG-----QVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        71 lmv~~p~~~i~~l~~--ag~d~i~~H~e~-~d~g~~~i~~i~~~-~~~--~~-----d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +=..++++.++.+.+  .|+|++.+++.. ..+|+.+|+++|+. +..  ++     +.|..|++.++++|||++|+|.|
T Consensus        13 lD~~~~~~~~~~~~~~~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~   92 (218)
T 3jr2_A           13 LDQTNLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAA   92 (218)
T ss_dssp             ECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETT
T ss_pred             eCCCCHHHHHHHHHHhcCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecC
Confidence            334567776665543  478999777543 24589999999998 332  32     34899999999999999999998


Q ss_pred             CCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE-EecCCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600        140 PVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM-TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       140 ~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m-av~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                         ...+ +.+.++.                     ++..+...++ .++|.|+         +.+..+.+.  .++..+
T Consensus        93 ---~~~~~~~~~~~~---------------------~~~~g~~~~~d~l~~~T~---------~~~~~~~~~--g~d~v~  137 (218)
T 3jr2_A           93 ---AHIATIAACKKV---------------------ADELNGEIQIEIYGNWTM---------QDAKAWVDL--GITQAI  137 (218)
T ss_dssp             ---SCHHHHHHHHHH---------------------HHHHTCEEEEECCSSCCH---------HHHHHHHHT--TCCEEE
T ss_pred             ---CCHHHHHHHHHH---------------------HHHhCCccceeeeecCCH---------HHHHHHHHc--Ccccee
Confidence               6544 3344443                     4455555555 6788663         123344333  455443


Q ss_pred             eCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        218 DGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       218 dGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .    .+++      .|+++||.|.+..+++|++++.  +++.|.||||||++|++++.
T Consensus       138 ~----~~~~------~~~~~g~~~~~~~l~~i~~~~~--~~~pi~v~GGI~~~~~~~~~  184 (218)
T 3jr2_A          138 Y----HRSR------DAELAGIGWTTDDLDKMRQLSA--LGIELSITGGIVPEDIYLFE  184 (218)
T ss_dssp             E----ECCH------HHHHHTCCSCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGT
T ss_pred             e----eecc------ccccCCCcCCHHHHHHHHHHhC--CCCCEEEECCCCHHHHHHHH
Confidence            2    2333      3778899999999999999875  46789999999999998765

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.32  E-value=1.9e-11  Score=107.04  Aligned_cols=180  Identities=12%  Similarity=0.061  Sum_probs=123.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCee---------eeeeeccCcHHhHHHHHhcCCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF---------ETHMMVQNPQQWIEPMADANVD   89 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~---------d~Hlmv~~p~~~i~~l~~ag~d   89 (277)
                      .+.+..+.+++.|++++|+|            +++.++.+|+. +++|+         +.|+|+.++.++++.+.++|+|
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~------------~~~~i~~i~~~-~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad  103 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN------------SVRDIKEIQAI-TDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIA  103 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHTT-CCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCS
T ss_pred             hHHHHHHHHHHCCCcEeecC------------CHHHHHHHHHh-CCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCC
Confidence            77788889999999999986            67889999985 78888         6799999999999999999999


Q ss_pred             eEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHH
Q psy11600         90 QYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVD  169 (277)
Q Consensus        90 ~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~  169 (277)
                      .+++|.+......                                      .....++++.+++..-...++.++.|+-+
T Consensus       104 ~V~l~~~~~~~~~--------------------------------------~~~~~~~i~~i~~~~~~~~v~~~~~t~~e  145 (234)
T 1yxy_A          104 VIAMDCTKRDRHD--------------------------------------GLDIASFIRQVKEKYPNQLLMADISTFDE  145 (234)
T ss_dssp             EEEEECCSSCCTT--------------------------------------CCCHHHHHHHHHHHCTTCEEEEECSSHHH
T ss_pred             EEEEcccccCCCC--------------------------------------CccHHHHHHHHHHhCCCCeEEEeCCCHHH
Confidence            9999987643100                                      00234555566654111234445554433


Q ss_pred             hHHHHHhhcCce--EEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC---CCccccc
Q psy11600        170 VIAEYIESADLV--LIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFMQ  243 (277)
Q Consensus       170 ~i~~~i~~~d~v--l~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~~  243 (277)
                      ....+-..+|++  .++.++|++.  .+...-++.++++++.  ++.+.++|||+ .+++..+.++|++.   |+..|. 
T Consensus       146 a~~a~~~Gad~i~~~v~g~~~~~~--~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~-  220 (234)
T 1yxy_A          146 GLVAHQAGIDFVGTTLSGYTPYSR--QEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR-  220 (234)
T ss_dssp             HHHHHHTTCSEEECTTTTSSTTSC--CSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC-
T ss_pred             HHHHHHcCCCEEeeeccccCCCCc--CCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC-
Confidence            222223346777  5666677652  2333334556666654  78899999999 99999999999885   555554 


Q ss_pred             CHHHHHHHHHhh
Q psy11600        244 DMMPKVKWLREN  255 (277)
Q Consensus       244 ~~~~kI~~l~~~  255 (277)
                       ....++++++.
T Consensus       221 -p~~~~~~l~~~  231 (234)
T 1yxy_A          221 -PKEIAERFIEA  231 (234)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -hHHHHHHHHHH
Confidence             45566666653

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.29  E-value=3.4e-12  Score=113.05  Aligned_cols=155  Identities=11%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             ccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhhC-CCcccc-----hh---hhhHHHHhcCCCeEEeecCC
Q psy11600         73 VQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEAG-MKVGQV-----LQ---DWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        73 v~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~~-~~~~d~-----p~---~~i~~~~~~g~d~it~H~E~  140 (277)
                      ..++++.++.+.+.|  ++|+=+|+|.+ .+|+.+|+++|+.+ ..+.|+     |.   .|++.++++|||++|||.| 
T Consensus        12 ~~~l~~~~~~~~~~~~~v~~~Kv~~d~~~~~G~~~v~~l~~~~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~-   90 (239)
T 1dbt_A           12 FASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAA-   90 (239)
T ss_dssp             CSSHHHHHHHTGGGTTSCCEEEECHHHHHHHTHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGG-
T ss_pred             CCCHHHHHHHHHHhcccCcEEEECHHHHHHhCHHHHHHHHHCCCcEEEEeccccchHHHHHHHHHHHhcCCCEEEEeCc-
Confidence            457888888888887  58966698875 55999999999984 445554     65   5999999999999999999 


Q ss_pred             CCChHHH-HHHHHHhCCccceeeCCCCCHHhHHHHHhhc---Cce--EEEEecCCCCCc-hhh-hhh-h--hhHHHHHhh
Q psy11600        141 VDNVPQV-IRQIKEAGMKVGLAIKPKTPVDVIAEYIESA---DLV--LIMTVEPGFGGQ-KFM-QDM-M--PKVKWLREN  209 (277)
Q Consensus       141 ~~~~~~~-~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~---d~v--l~mav~Pgt~gq-~~~-~~~-l--~kI~~l~~~  209 (277)
                        ...+. .++++.                     ++..   +..  .+++|++-|+.. +.+ .++ +  +..+.+.  
T Consensus        91 --~g~~~l~~~~~~---------------------~~~~~~~g~~~~~~~~V~~~ts~~~~~l~~~~~~~~~~~d~Vl--  145 (239)
T 1dbt_A           91 --GGKKMMQAALEG---------------------LEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVV--  145 (239)
T ss_dssp             --GCHHHHHHHHHH---------------------HHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCSCHHHHHH--
T ss_pred             --CCHHHHHHHHHH---------------------HHhhhccCCCCccEEEEEEcCCCCHHHHHHHhccCCCHHHHHH--
Confidence              66664 344443                     2333   331  134444544321 122 221 2  1122221  


Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCH
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI  272 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~  272 (277)
                                   .|+.     ..+++|++.|.... ++++++|+..+...|+|||||++++.
T Consensus       146 -------------~ma~-----~~~~~G~~g~v~~~-~~i~~lr~~~~~~~i~v~gGI~~~~~  189 (239)
T 1dbt_A          146 -------------HYSK-----QAEESGLDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSED  189 (239)
T ss_dssp             -------------HHHH-----HHHHTTCSEEECCG-GGHHHHTTTSCTTCEEEECCBCCTTS
T ss_pred             -------------HHHH-----HHHHhCCCEEEECH-HHHHHHHHhcCCCcEEEeCCcCCCCC
Confidence                         1221     13677788899887 89999998776567999999999987

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.26  E-value=6.2e-11  Score=103.65  Aligned_cols=204  Identities=16%  Similarity=0.135  Sum_probs=135.1

Q ss_pred             CCCCceEeeeccccCc----------------ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCC
Q psy11600          2 SHVQCMIGPSILNSDL----------------SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKA   65 (277)
Q Consensus         2 ~~~~~~~~~s~~~~d~----------------~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~   65 (277)
                      |++..+|.|+|---|=                .+..+.++.+++.|+|++|++-+++.+ ++.....+.++++++. +++
T Consensus         1 ~~~~~~iip~id~~~g~~~~v~g~~~~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~-~~i   78 (253)
T 1h5y_A            1 SHMALRIIPCLDIDGGAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEA-VSI   78 (253)
T ss_dssp             -CCBCEEEEEEEECGGGCEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHH-CSS
T ss_pred             CCCccEEEEEEEEcCCceEEEEcccccceeecccHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHh-cCC
Confidence            4556677888764332                367788999999999999999999776 4445667889999986 689


Q ss_pred             eeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChH
Q psy11600         66 FFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVP  145 (277)
Q Consensus        66 ~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~  145 (277)
                      |+.+|.++.++++. +.+.++|+|.++++.....                                           ++.
T Consensus        79 pvi~~g~i~~~~~~-~~~~~~Gad~V~i~~~~~~-------------------------------------------~~~  114 (253)
T 1h5y_A           79 PVLVGGGVRSLEDA-TTLFRAGADKVSVNTAAVR-------------------------------------------NPQ  114 (253)
T ss_dssp             CEEEESSCCSHHHH-HHHHHHTCSEEEESHHHHH-------------------------------------------CTH
T ss_pred             CEEEECCCCCHHHH-HHHHHcCCCEEEEChHHhh-------------------------------------------CcH
Confidence            99999999999765 7778899999987755432                                           222


Q ss_pred             HHHHHHHHhCCc---cceeeC--C---------------CCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHH
Q psy11600        146 QVIRQIKEAGMK---VGLAIK--P---------------KTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVK  204 (277)
Q Consensus       146 ~~~~~I~~~g~~---~g~~i~--p---------------~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~  204 (277)
                      .+.+.++..|..   .++.++  |               .++.+.+..+.+. +|.+.++.++|++.++.+.   ++.++
T Consensus       115 ~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~---~~~i~  191 (253)
T 1h5y_A          115 LVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYD---VELIR  191 (253)
T ss_dssp             HHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCC---HHHHH
T ss_pred             HHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCC---HHHHH
Confidence            233333443321   121111  0               1334444444444 7889999999876655553   34455


Q ss_pred             HHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCccccc-CHHHHH-HHHHhh
Q psy11600        205 WLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFMQ-DMMPKV-KWLREN  255 (277)
Q Consensus       205 ~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~~-~~~~kI-~~l~~~  255 (277)
                      ++++.. ++.+.+.|||+- +++.++.++|++.   |+..+.. ...+.+ +++++.
T Consensus       192 ~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~~  247 (253)
T 1h5y_A          192 RVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKER  247 (253)
T ss_dssp             HHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHHT
T ss_pred             HHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHHc
Confidence            555543 678999999994 8999999888885   5555543 234443 445443

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=99.22  E-value=8.1e-11  Score=102.16  Aligned_cols=191  Identities=16%  Similarity=0.060  Sum_probs=124.8

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM   83 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l   83 (277)
                      |-|+|+.++.|.  +.+.++.+.+.|+|++|++.+|+.   +..++  .+.++.+++. +. ...+|+++.   ++++.+
T Consensus        21 ~~It~~~~~~~~--~~~~~~~~~~~G~~~i~l~~~~~~---~~~~~~~~~~~~~l~~~-~~-~~~v~v~v~---~~~~~a   90 (227)
T 2tps_A           21 YFIMGSNNTKAD--PVTVVQKALKGGATLYQFREKGGD---ALTGEARIKFAEKAQAA-CR-EAGVPFIVN---DDVELA   90 (227)
T ss_dssp             EEEECGGGCSSC--HHHHHHHHHHHTCSEEEECCCSTT---CCCHHHHHHHHHHHHHH-HH-HHTCCEEEE---SCHHHH
T ss_pred             EEEECCccccch--HHHHHHHHHHCCCCEEEEecCCCC---HhHHHHHHHHHHHHHHH-HH-HcCCeEEEc---CHHHHH
Confidence            568999988776  888999999999999999999864   23454  3556666653 22 356788885   356788


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      .++|+|.+  |+...+.                                          .   +.+..+..|. .-+++.
T Consensus        91 ~~~gad~v--~l~~~~~------------------------------------------~---~~~~~~~~g~-~~~~~s  122 (227)
T 2tps_A           91 LNLKADGI--HIGQEDA------------------------------------------N---AKEVRAAIGD-MILGVS  122 (227)
T ss_dssp             HHHTCSEE--EECTTSS------------------------------------------C---HHHHHHHHTT-SEEEEE
T ss_pred             HHcCCCEE--EECCCcc------------------------------------------C---HHHHHHhcCC-cEEEEe
Confidence            88999999  6543331                                          1   1111122342 233444


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      +.++.+....+-..+|+++++.+.|....+. +.+.-++.++++++..+++.+.+.|||+.+++.++.++|++.   |+.
T Consensus       123 ~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~  202 (227)
T 2tps_A          123 AHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISA  202 (227)
T ss_dssp             ECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHH
T ss_pred             cCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHH
Confidence            4444332222223478887776777543332 233346667777765545789999999999999999999885   666


Q ss_pred             ccc-cCHHHHHHHHHh
Q psy11600        240 KFM-QDMMPKVKWLRE  254 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~  254 (277)
                      .+. ++..++++++++
T Consensus       203 i~~~~d~~~~~~~~~~  218 (227)
T 2tps_A          203 ISQAEDPESAARKFRE  218 (227)
T ss_dssp             HHTSSCHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHH
Confidence            665 466688887765

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.21  E-value=3.5e-10  Score=98.10  Aligned_cols=180  Identities=9%  Similarity=0.100  Sum_probs=120.8

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCee---------eeeeeccCcHHhHHHHHhc
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF---------ETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~---------d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +.....+-.+.+++.|++++|+|            +++.++++|+. +++|+         +.|+|+.++.++++.+.++
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~~------------~~~~i~~i~~~-~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~   87 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRAN------------TKEDILAIKET-VDLPVIGIVKRDYDHSDVFITATSKEVDELIES   87 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHHH-CCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHCCCeeeccC------------CHHHHHHHHHh-cCCCEEeeeccCCCccccccCCcHHHHHHHHhC
Confidence            33456677788889999999985            67889999986 78888         6799999999999999999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh--CCccceeeCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA--GMKVGLAIKP  164 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~--g~~~g~~i~p  164 (277)
                      |+|.+++|.+.....                                   + +   +..++++.+++.  |+..  +.++
T Consensus        88 Gad~v~l~~~~~~~p-----------------------------------~-~---~~~~~i~~~~~~~~~~~v--~~~~  126 (223)
T 1y0e_A           88 QCEVIALDATLQQRP-----------------------------------K-E---TLDELVSYIRTHAPNVEI--MADI  126 (223)
T ss_dssp             TCSEEEEECSCSCCS-----------------------------------S-S---CHHHHHHHHHHHCTTSEE--EEEC
T ss_pred             CCCEEEEeeecccCc-----------------------------------c-c---CHHHHHHHHHHhCCCceE--EecC
Confidence            999999998764310                                   0 0   334556666665  4333  3344


Q ss_pred             CCCHHhHHHHHhhcCceEEEEecCCCCCchhh----hhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---
Q psy11600        165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFM----QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---  236 (277)
Q Consensus       165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~----~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---  236 (277)
                      .++-+ ... +...+.-.+++.++|+.++++.    ..-++.++++++.. ++.+.++||| +.+++..+.++|++.   
T Consensus       127 ~t~~e-~~~-~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~v  203 (223)
T 1y0e_A          127 ATVEE-AKN-AARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVV  203 (223)
T ss_dssp             SSHHH-HHH-HHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHH-HHH-HHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence            44332 222 3333444445556666554442    23344555665544 6889999999 999999999999885   


Q ss_pred             CCcccccCHHHHHHHHHh
Q psy11600        237 GGQKFMQDMMPKVKWLRE  254 (277)
Q Consensus       237 ggq~F~~~~~~kI~~l~~  254 (277)
                      |+..|.  .....+++++
T Consensus       204 G~al~~--p~~~~~~~~~  219 (223)
T 1y0e_A          204 GGAITR--PKEITKRFVQ  219 (223)
T ss_dssp             CHHHHC--HHHHHHHHHH
T ss_pred             ChHHcC--cHHHHHHHHH
Confidence            656554  3445555554

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=99.20  E-value=1.4e-10  Score=99.64  Aligned_cols=185  Identities=14%  Similarity=0.144  Sum_probs=115.2

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC--HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHH
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG--HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPM   83 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g--~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l   83 (277)
                      +.|+||. +.   ++.+.++.+.+.|++++|++.      |+.++.  .+.++.+++. ++ ...+|+++.   ++++.+
T Consensus        18 ~~It~~~-~~---~~~~~~~~~~~~G~~~i~l~~------~~~~~~~~~~~~~~l~~~-~~-~~~v~v~v~---~~~~~a   82 (215)
T 1xi3_A           18 YVITDRR-LK---PEVESVREALEGGATAIQMRI------KNAPTREMYEIGKTLRQL-TR-EYDALFFVD---DRVDVA   82 (215)
T ss_dssp             EEECCTT-TS---CHHHHHHHHHHTTCSEEEECC------CSCCHHHHHHHHHHHHHH-HH-HTTCEEEEE---SCHHHH
T ss_pred             EEEECCc-hh---hHHHHHHHHHHCCCCEEEECC------CCCCHHHHHHHHHHHHHH-HH-HcCCeEEEc---ChHHHH
Confidence            4588887 55   888999999999999999985      333332  5666677653 22 356788885   456788


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      .++|+|.+  |+...+.                                          ... ..+.+. .+..  .++.
T Consensus        83 ~~~gad~v--~l~~~~~------------------------------------------~~~-~~~~~~-~~~~--~~v~  114 (215)
T 1xi3_A           83 LAVDADGV--QLGPEDM------------------------------------------PIE-VAKEIA-PNLI--IGAS  114 (215)
T ss_dssp             HHHTCSEE--EECTTSC------------------------------------------CHH-HHHHHC-TTSE--EEEE
T ss_pred             HHcCCCEE--EECCccC------------------------------------------CHH-HHHHhC-CCCE--EEEe
Confidence            88999999  4443331                                          111 111111 2222  2222


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~  240 (277)
                      +.++.+....+-..+|+++++.+.|+.+.+.+...-++.++++++.. ++.+.+.|||+.+++.++.++|++.   |+..
T Consensus       115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i  193 (215)
T 1xi3_A          115 VYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAVISAV  193 (215)
T ss_dssp             ESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEESHHH
T ss_pred             cCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHH
Confidence            33333322222234788877776665433333334456666666544 6789999999999999999999885   5555


Q ss_pred             cc-cCHHHHHHHHHh
Q psy11600        241 FM-QDMMPKVKWLRE  254 (277)
Q Consensus       241 F~-~~~~~kI~~l~~  254 (277)
                      +. ++..++++++++
T Consensus       194 ~~~~d~~~~~~~~~~  208 (215)
T 1xi3_A          194 MGAEDVRKATEELRK  208 (215)
T ss_dssp             HTSSSHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHH
Confidence            55 466678888765

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.19  E-value=2.7e-11  Score=105.32  Aligned_cols=154  Identities=9%  Similarity=-0.020  Sum_probs=97.5

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhh---CCCcccc-----hhhhhHHHHhcCCCeEEeecC
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEA---GMKVGQV-----LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~---~~~~~d~-----p~~~i~~~~~~g~d~it~H~E  139 (277)
                      ..++++.++.+.+.|. +++ .++++++     |+.+|+++|+.   +..+.|+     |..|++.++++|||++|+|.|
T Consensus        12 ~~~~~~~~~~~~~~~~-~v~-~~kv~~~~f~~~G~~~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~   89 (216)
T 1q6o_A           12 NQTMDSAYETTRLIAE-EVD-IIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICC   89 (216)
T ss_dssp             CSSHHHHHHHHHHHGG-GCS-EEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred             CCCHHHHHHHHHHhcc-cCC-EEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEecc
Confidence            4567788888877763 321 1355654     99999999998   3334443     999999999999999999999


Q ss_pred             CCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEec-CCCCCchhhhhhhhhHHHHHhhCCCccEEE
Q psy11600        140 PVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE-PGFGGQKFMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       140 ~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~-Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                         ...+ +.+.++.                     +++.+...++.+. +-|+         ...+.+.++ ...++.+
T Consensus        90 ---~g~~~l~~~~~~---------------------~~~~g~~~~~~ll~~~t~---------~~~~~l~~~-~~~~~vl  135 (216)
T 1q6o_A           90 ---ADINTAKGALDV---------------------AKEFNGDVQIELTGYWTW---------EQAQQWRDA-GIGQVVY  135 (216)
T ss_dssp             ---SCHHHHHHHHHH---------------------HHHTTCEEEEEECSCCCH---------HHHHHHHHT-TCCEEEE
T ss_pred             ---CCHHHHHHHHHH---------------------HHHcCCCceeeeeeCCCh---------hhHHHHHhc-CcHHHHH
Confidence               6655 3333332                     3334444433222 2110         123344333 2233433


Q ss_pred             eCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCC-CCeEEEeCCCCccCHHHhh
Q psy11600        218 DGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       218 dGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~-~~~I~VDGGI~~~~~~~~~  276 (277)
                      --  -.+++      +||++|      +.++++++|+..+ .+.|.||||||++|+++++
T Consensus       136 ~~--a~~~~------~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~  181 (216)
T 1q6o_A          136 HR--SRDAQ------AAGVAW------GEADITAIKRLSDMGFKVTVTGGLALEDLPLFK  181 (216)
T ss_dssp             EC--CHHHH------HTTCCC------CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGT
T ss_pred             HH--HHHHH------hcCCCC------CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHH
Confidence            11  12344      699877      4678888887653 6779999999999987765

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=99.19  E-value=7e-10  Score=99.67  Aligned_cols=171  Identities=13%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             HHHHHhcCCCCeeeeeeeccCc--HH---hHHHHHhcCCCeEEEeccC------CCC-------------------CHHH
Q psy11600         55 VKCLRNKIPKAFFETHMMVQNP--QQ---WIEPMADANVDQYTFHVEP------VDN-------------------VPQV  104 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~~p--~~---~i~~l~~ag~d~i~~H~e~------~d~-------------------g~~~  104 (277)
                      .+++|+. -+..+-.+++..+|  ++   .++.+.++|+|++  |+++      +||                   ++.+
T Consensus         8 f~~~~~~-~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~i--eig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~   84 (268)
T 1qop_A            8 FAQLNDR-REGAFVPFVTLGDPGIEQSLKIIDTLIDAGADAL--ELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEM   84 (268)
T ss_dssp             HHHHHHT-TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSE--EEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHhc-CCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEE--EECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence            3455543 35578889999998  43   4777888999999  5554      444                   3467


Q ss_pred             HHHHHhh-CCCcc-cc----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHH
Q psy11600        105 IRQIKEA-GMKVG-QV----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIA  172 (277)
Q Consensus       105 i~~i~~~-~~~~~-d~----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~  172 (277)
                      ++++|+. +..|+ -+    |      ++|++.++++|+|.+++|-+   ...+..++                     .
T Consensus        85 v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~---~~e~~~~~---------------------~  140 (268)
T 1qop_A           85 LAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADV---PVEESAPF---------------------R  140 (268)
T ss_dssp             HHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTC---CGGGCHHH---------------------H
T ss_pred             HHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCC---CHHHHHHH---------------------H
Confidence            9999988 65554 22    4      78999999999999999977   65443333                     3


Q ss_pred             HHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCc--ccccCHHHHHH
Q psy11600        173 EYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQ--KFMQDMMPKVK  250 (277)
Q Consensus       173 ~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq--~F~~~~~~kI~  250 (277)
                      +.++..++..+..++|.++.        ++++.+.+....+...       +++       .|++|+  .|.++..++|+
T Consensus       141 ~~~~~~g~~~i~l~~p~t~~--------~~i~~i~~~~~g~v~~-------~s~-------~G~tG~~~~~~~~~~~~i~  198 (268)
T 1qop_A          141 QAALRHNIAPIFICPPNADD--------DLLRQVASYGRGYTYL-------LSR-------SGVTGAENRGALPLHHLIE  198 (268)
T ss_dssp             HHHHHTTCEEECEECTTCCH--------HHHHHHHHHCCSCEEE-------ESS-------SSCCCSSSCC--CCHHHHH
T ss_pred             HHHHHcCCcEEEEECCCCCH--------HHHHHHHhhCCCcEEE-------Eec-------CCcCCCccCCCchHHHHHH
Confidence            45666666666777898762        3455555555554322       232       577776  67788899999


Q ss_pred             HHHhhCCCCeEEEeCCCC-ccCHHHh
Q psy11600        251 WLRENYPTLNIEVDGGVG-PNTIDEC  275 (277)
Q Consensus       251 ~l~~~~~~~~I~VDGGI~-~~~~~~~  275 (277)
                      ++|+.. ++.|.|||||+ +++++++
T Consensus       199 ~lr~~~-~~pi~vggGI~t~e~~~~~  223 (268)
T 1qop_A          199 KLKEYH-AAPALQGFGISSPEQVSAA  223 (268)
T ss_dssp             HHHHTT-CCCEEEESSCCSHHHHHHH
T ss_pred             HHHhcc-CCcEEEECCCCCHHHHHHH
Confidence            999875 57799999999 8998873

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.14  E-value=1.8e-10  Score=101.71  Aligned_cols=187  Identities=14%  Similarity=0.146  Sum_probs=127.0

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+..+.+++.|+|++|++-+|+.|. +..+..+.++++++. +++|+.+|-++.+|++ ++.+.++|+|.++++.+..
T Consensus        31 d~~~~a~~~~~~Gad~i~v~d~~~~~~-~~~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~-~~~~~~~Gad~V~lg~~~l  107 (253)
T 1thf_D           31 DPVELGKFYSEIGIDELVFLDITASVE-KRKTMLELVEKVAEQ-IDIPFTVGGGIHDFET-ASELILRGADKVSINTAAV  107 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEESSCSSS-HHHHHHHHHHHHHTT-CCSCEEEESSCCSHHH-HHHHHHTTCSEEEESHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEECCchhhc-CCcccHHHHHHHHHh-CCCCEEEeCCCCCHHH-HHHHHHcCCCEEEEChHHH
Confidence            455566788899999999999998875 455677889999985 7999999999988865 7888889999998776654


Q ss_pred             CCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCCC------------
Q psy11600         99 DNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKPK------------  165 (277)
Q Consensus        99 d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p~------------  165 (277)
                      .                                           ++..+.+.++..|.. ..+++.+.            
T Consensus       108 ~-------------------------------------------~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g  144 (253)
T 1thf_D          108 E-------------------------------------------NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYS  144 (253)
T ss_dssp             H-------------------------------------------CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETT
T ss_pred             h-------------------------------------------ChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECC
Confidence            3                                           233344444444431 23444442            


Q ss_pred             -------CCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600        166 -------TPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF  236 (277)
Q Consensus       166 -------t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~  236 (277)
                             ++.+.+..+.+. ++.+++++++++...+.+..+   .++++++.. ++.+...|||+- +++..+.++|++.
T Consensus       145 ~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~---~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadg  220 (253)
T 1thf_D          145 GKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTE---MIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADA  220 (253)
T ss_dssp             TTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHH---HHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             CccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHH---HHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChH
Confidence                   233444444444 677888888887555554433   444444433 677999999995 9999999988885


Q ss_pred             ---CCccccc--CHHHHHHHHHhh
Q psy11600        237 ---GGQKFMQ--DMMPKVKWLREN  255 (277)
Q Consensus       237 ---ggq~F~~--~~~~kI~~l~~~  255 (277)
                         |+..+..  +.-+.++.+++.
T Consensus       221 v~vGsal~~~~~~~~~~~~~l~~~  244 (253)
T 1thf_D          221 ALAASVFHFREIDVRELKEYLKKH  244 (253)
T ss_dssp             EEESHHHHTTCSCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHc
Confidence               5554543  344445556554

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.12  E-value=8.1e-10  Score=94.96  Aligned_cols=157  Identities=17%  Similarity=0.083  Sum_probs=103.1

Q ss_pred             ccCcHHhHHHHHhc--CCCeEEEeccC-CCCCHHHHHHHHhh-CCCcccc-------hhhhhHHHHhcCCCeEEeecCCC
Q psy11600         73 VQNPQQWIEPMADA--NVDQYTFHVEP-VDNVPQVIRQIKEA-GMKVGQV-------LQDWIEPMADANVDQYTFHVEPV  141 (277)
Q Consensus        73 v~~p~~~i~~l~~a--g~d~i~~H~e~-~d~g~~~i~~i~~~-~~~~~d~-------p~~~i~~~~~~g~d~it~H~E~~  141 (277)
                      ..++++.++.+.+.  |+|++-+-..- ..+|++.|+++|+. +..++..       +..+++.++++|+|.+++|.+  
T Consensus         9 ~~~~~~~~~~~~~~~~~~diie~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~--   86 (211)
T 3f4w_A            9 ELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV--   86 (211)
T ss_dssp             SCCHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT--
T ss_pred             CCCHHHHHHHHHHhhcCccEEEeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC--
Confidence            34667766666554  44544221111 23489999999998 4555532       444599999999999999998  


Q ss_pred             CCh-HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEE-ecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeC
Q psy11600        142 DNV-PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMT-VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDG  219 (277)
Q Consensus       142 ~~~-~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~ma-v~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdG  219 (277)
                       .. .++.+.++                     .++..+..+++. ++|.++        .+.++.+.+...++ +.+  
T Consensus        87 -~~~~~~~~~~~---------------------~~~~~g~~~~v~~~~~~t~--------~~~~~~~~~~g~d~-i~v--  133 (211)
T 3f4w_A           87 -TDVLTIQSCIR---------------------AAKEAGKQVVVDMICVDDL--------PARVRLLEEAGADM-LAV--  133 (211)
T ss_dssp             -SCHHHHHHHHH---------------------HHHHHTCEEEEECTTCSSH--------HHHHHHHHHHTCCE-EEE--
T ss_pred             -CChhHHHHHHH---------------------HHHHcCCeEEEEecCCCCH--------HHHHHHHHHcCCCE-EEE--
Confidence             54 33333333                     445556655554 456542        23344444443332 222  


Q ss_pred             CCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600        220 GVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       220 gV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                                   +||++|+.|.+..+++++++++..++..+.++||||++|++++.+
T Consensus       134 -------------~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~  178 (211)
T 3f4w_A          134 -------------HTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYAL  178 (211)
T ss_dssp             -------------ECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHT
T ss_pred             -------------cCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence                         488888888776789999999887778899999999999987753

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.11  E-value=6.6e-10  Score=97.92  Aligned_cols=163  Identities=8%  Similarity=0.102  Sum_probs=112.0

Q ss_pred             CCeeeeeeeccCcH--H---hHHHHHhcCCCeEEEecc------CCCC-------------------CHHHHHHHHhhCC
Q psy11600         64 KAFFETHMMVQNPQ--Q---WIEPMADANVDQYTFHVE------PVDN-------------------VPQVIRQIKEAGM  113 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~--~---~i~~l~~ag~d~i~~H~e------~~d~-------------------g~~~i~~i~~~~~  113 (277)
                      +..+..+++..+|.  +   .++.+.++ +|++  |++      .+||                   +..+++++|+.+.
T Consensus         4 ~~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~i--el~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~   80 (248)
T 1geq_A            4 DGSLIPYLTAGDPDKQSTLNFLLALDEY-AGAI--ELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSS   80 (248)
T ss_dssp             TTEEEEEEETTSSCHHHHHHHHHHHGGG-BSCE--EEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEE--EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC
Confidence            34688999999994  3   46677778 9999  666      5665                   2678999999876


Q ss_pred             Ccccc-----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceE
Q psy11600        114 KVGQV-----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVL  182 (277)
Q Consensus       114 ~~~d~-----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl  182 (277)
                      .|+.+     |      +++++.+.++|||.+++|.+   ...+..++                     .++++..+...
T Consensus        81 ~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~---~~~~~~~~---------------------~~~~~~~g~~~  136 (248)
T 1geq_A           81 TPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDL---PVFHAKEF---------------------TEIAREEGIKT  136 (248)
T ss_dssp             CCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTC---CGGGHHHH---------------------HHHHHHHTCEE
T ss_pred             CCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCC---ChhhHHHH---------------------HHHHHHhCCCe
Confidence            65432     5      78999999999999999988   76554433                     34556667777


Q ss_pred             EEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcc--cccCHHHHHHHHHhhCCCCe
Q psy11600        183 IMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQK--FMQDMMPKVKWLRENYPTLN  260 (277)
Q Consensus       183 ~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~--F~~~~~~kI~~l~~~~~~~~  260 (277)
                      ++.++|.++.        +.++.+....+.+...       +++       +|+.|+.  |.+..+++++++++.. ++.
T Consensus       137 ~~~i~~~t~~--------e~~~~~~~~~d~~i~~-------~~~-------~G~~g~~~~~~~~~~~~i~~l~~~~-~~p  193 (248)
T 1geq_A          137 VFLAAPNTPD--------ERLKVIDDMTTGFVYL-------VSL-------YGTTGAREEIPKTAYDLLRRAKRIC-RNK  193 (248)
T ss_dssp             EEEECTTCCH--------HHHHHHHHHCSSEEEE-------ECC-------C-------CCCHHHHHHHHHHHHHC-SSC
T ss_pred             EEEECCCCHH--------HHHHHHHhcCCCeEEE-------EEC-------CccCCCCCCCChhHHHHHHHHHhhc-CCC
Confidence            7888998762        2344444333322211       121       6665554  6677889999999875 577


Q ss_pred             EEEeCCCCc-cCHHHhh
Q psy11600        261 IEVDGGVGP-NTIDECA  276 (277)
Q Consensus       261 I~VDGGI~~-~~~~~~~  276 (277)
                      |.++|||+. ++++++.
T Consensus       194 i~~~GGI~~~e~i~~~~  210 (248)
T 1geq_A          194 VAVGFGVSKREHVVSLL  210 (248)
T ss_dssp             EEEESCCCSHHHHHHHH
T ss_pred             EEEEeecCCHHHHHHHH
Confidence            999999998 9988763

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.06  E-value=5e-10  Score=98.11  Aligned_cols=159  Identities=9%  Similarity=0.037  Sum_probs=100.0

Q ss_pred             eeccCcHHhHHHHHhcC--CCeEEEeccC-CCCCHHHHHHHHhhC---CCccc-----chhhhhHHHHhcCCCeEEeecC
Q psy11600         71 MMVQNPQQWIEPMADAN--VDQYTFHVEP-VDNVPQVIRQIKEAG---MKVGQ-----VLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        71 lmv~~p~~~i~~l~~ag--~d~i~~H~e~-~d~g~~~i~~i~~~~---~~~~d-----~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      |=+.+.++.++.+.+.|  ++|+.++.+. ..+|+.+|+++|+..   ..+.|     .|..+.+.++++|||++|+|.+
T Consensus        12 lD~~~~~~a~~~~~~~~~~~~~ikvg~~lf~~~G~~~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~~   91 (221)
T 3exr_A           12 LDHSNLKGAITAAVSVGNEVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICS   91 (221)
T ss_dssp             ECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETT
T ss_pred             eCCCCHHHHHHHHHhhCCCceEEEECHHHHHhcCHHHHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHHcCCCEEEEecc
Confidence            44567777777777766  6777554332 234999999999872   22444     4999999999999999999998


Q ss_pred             CCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcC---ceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCc-cE
Q psy11600        140 PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESAD---LVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTL-NI  215 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d---~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~-~i  215 (277)
                         ...+.++...+                    .++..+   .+++++++|.++.        +.++++.+.  .+ ++
T Consensus        92 ---~g~~~l~~a~~--------------------~~~~~g~~~~~~~Vt~lts~~~--------~~~~~~~~~--~~~~~  138 (221)
T 3exr_A           92 ---ATIPTMKAARK--------------------AIEDINPDKGEIQVELYGDWTY--------DQAQQWLDA--GISQA  138 (221)
T ss_dssp             ---SCHHHHHHHHH--------------------HHHHHCTTTCEEEEECCSSCCH--------HHHHHHHHT--TCCEE
T ss_pred             ---CCHHHHHHHHH--------------------HHHhcCCCcceEEEEEcCCCCH--------HHHHHHHcC--CHHHH
Confidence               66554433322                    233333   6788999998862        223333221  23 23


Q ss_pred             EEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhC-CCCeEEEeCCCCccCHHHhh
Q psy11600        216 EVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       216 ~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~-~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .+-.+..           +++.|+.   .+.++++.+|+.. +++.|+||||||++|++.++
T Consensus       139 v~~~a~~-----------~~~~Gvv---~s~~e~~~ir~~~~~~~~i~v~gGI~~~~~~~~~  186 (221)
T 3exr_A          139 IYHQSRD-----------ALLAGET---WGEKDLNKVKKLIEMGFRVSVTGGLSVDTLKLFE  186 (221)
T ss_dssp             EEECCHH-----------HHHHTCC---CCHHHHHHHHHHHHHTCEEEEESSCCGGGGGGGT
T ss_pred             HHHHHHh-----------cCCCccc---cCHHHHHHHHHhhcCCceEEEECCCCHHHHHHHH
Confidence            3322221           2233443   2345566666543 36789999999999988764

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.02  E-value=1.1e-09  Score=93.97  Aligned_cols=154  Identities=13%  Similarity=0.008  Sum_probs=97.1

Q ss_pred             cCcHHhHHHHHhc--CCCeEEEeccC-CCCCHHHHHHHHhhC-CCccc-------chhhhhHHHHhcCCCeEEeecCCCC
Q psy11600         74 QNPQQWIEPMADA--NVDQYTFHVEP-VDNVPQVIRQIKEAG-MKVGQ-------VLQDWIEPMADANVDQYTFHVEPVD  142 (277)
Q Consensus        74 ~~p~~~i~~l~~a--g~d~i~~H~e~-~d~g~~~i~~i~~~~-~~~~d-------~p~~~i~~~~~~g~d~it~H~E~~~  142 (277)
                      .++++.++.+.+.  |++++.+.... ...|+.+|+++|+.+ ..+++       .|..|++.+.++|||.+++|.+   
T Consensus        10 ~~~~~~~~~~~~~~~~v~~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~---   86 (207)
T 3ajx_A           10 LSTEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS---   86 (207)
T ss_dssp             SCHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT---
T ss_pred             CCHHHHHHHHHHhhccCCEEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc---
Confidence            4566665555433  66988554331 234899999999985 44433       2888999999999999999998   


Q ss_pred             ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe-cCCCCCchhhhhhhhhHHHHHhhCCCccEE-EeCC
Q psy11600        143 NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV-EPGFGGQKFMQDMMPKVKWLRENYPTLNIE-VDGG  220 (277)
Q Consensus       143 ~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav-~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~-vdGg  220 (277)
                      ......+.++                    +.++..+..+++++ +|.++.        +.++.+.+.  ..++. +-++
T Consensus        87 ~~~~~~~~~~--------------------~~~~~~g~~~gv~~~s~~~p~--------~~~~~~~~~--g~d~v~~~~~  136 (207)
T 3ajx_A           87 ADDSTIAGAV--------------------KAAQAHNKGVVVDLIGIEDKA--------TRAQEVRAL--GAKFVEMHAG  136 (207)
T ss_dssp             SCHHHHHHHH--------------------HHHHHHTCEEEEECTTCSSHH--------HHHHHHHHT--TCSEEEEECC
T ss_pred             CChHHHHHHH--------------------HHHHHcCCceEEEEecCCChH--------HHHHHHHHh--CCCEEEEEec
Confidence            5533332222                    23444455555655 222221        123333332  25655 5333


Q ss_pred             CCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        221 VGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       221 V~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +           .|+++|+.|.+   +++++++..  +..+.++||||++|++++.
T Consensus       137 ~-----------~~~~~g~~~~~---~~i~~~~~~--~~pi~v~GGI~~~~~~~~~  176 (207)
T 3ajx_A          137 L-----------DEQAKPGFDLN---GLLAAGEKA--RVPFSVAGGVKVATIPAVQ  176 (207)
T ss_dssp             H-----------HHHTSTTCCTH---HHHHHHHHH--TSCEEEESSCCGGGHHHHH
T ss_pred             c-----------cccccCCCchH---HHHHHhhCC--CCCEEEECCcCHHHHHHHH
Confidence            3           25667777665   888888765  5669999999999988764

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.94  E-value=4.4e-08  Score=88.11  Aligned_cols=173  Identities=13%  Similarity=0.137  Sum_probs=116.8

Q ss_pred             HHHHHHhcCCCCeeeeeeeccCc--H---HhHHHHHhcCCCeEEEecc----CCCC-------------C------HHHH
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQNP--Q---QWIEPMADANVDQYTFHVE----PVDN-------------V------PQVI  105 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~~p--~---~~i~~l~~ag~d~i~~H~e----~~d~-------------g------~~~i  105 (277)
                      ..+++|+. -+..+-.+++..+|  +   +.++.+.++|+|++++-+-    .+||             |      .+++
T Consensus         8 ~f~~~~~~-~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v   86 (267)
T 3vnd_A            8 KFAALKAQ-DKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDII   86 (267)
T ss_dssp             HHHHHHHH-TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHhc-CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            34455554 45678999999999  3   3588888999999943321    3566             3      7889


Q ss_pred             HHHHhh-CCCcc-cc----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHH
Q psy11600        106 RQIKEA-GMKVG-QV----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAE  173 (277)
Q Consensus       106 ~~i~~~-~~~~~-d~----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~  173 (277)
                      +++|+. +..|+ .+    |      ++|++.++++|+|.+.+|-.   .+++..+                     +.+
T Consensus        87 ~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dl---p~ee~~~---------------------~~~  142 (267)
T 3vnd_A           87 TKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADV---PVEESAP---------------------FSK  142 (267)
T ss_dssp             HHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTS---CGGGCHH---------------------HHH
T ss_pred             HHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCC---CHhhHHH---------------------HHH
Confidence            999987 55543 32    3      88999999999999999866   5544333                     344


Q ss_pred             HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcc-cccCHHHHHHHH
Q psy11600        174 YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQK-FMQDMMPKVKWL  252 (277)
Q Consensus       174 ~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~-F~~~~~~kI~~l  252 (277)
                      .++..++.++..+.|.|+        .++++.+.+....+-..       .++      -+..|++. +.++..+.++++
T Consensus       143 ~~~~~gl~~i~liaP~t~--------~eri~~i~~~~~gfvY~-------vS~------~GvTG~~~~~~~~~~~~v~~v  201 (267)
T 3vnd_A          143 AAKAHGIAPIFIAPPNAD--------ADTLKMVSEQGEGYTYL-------LSR------AGVTGTESKAGEPIENILTQL  201 (267)
T ss_dssp             HHHHTTCEEECEECTTCC--------HHHHHHHHHHCCSCEEE-------SCC------CCCC--------CHHHHHHHH
T ss_pred             HHHHcCCeEEEEECCCCC--------HHHHHHHHHhCCCcEEE-------Eec------CCCCCCccCCcHHHHHHHHHH
Confidence            667778777778899886        34666666665555332       122      12235543 667888999999


Q ss_pred             HhhCCCCeEEEeCCCC-ccCHH
Q psy11600        253 RENYPTLNIEVDGGVG-PNTID  273 (277)
Q Consensus       253 ~~~~~~~~I~VDGGI~-~~~~~  273 (277)
                      |+.. +.-+.|+|||+ +++++
T Consensus       202 r~~~-~~pv~vGfGI~~~e~~~  222 (267)
T 3vnd_A          202 AEFN-APPPLLGFGIAEPEQVR  222 (267)
T ss_dssp             HTTT-CCCEEECSSCCSHHHHH
T ss_pred             HHhc-CCCEEEECCcCCHHHHH
Confidence            9874 56799999996 78887

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.89  E-value=5e-08  Score=86.86  Aligned_cols=175  Identities=13%  Similarity=0.153  Sum_probs=113.5

Q ss_pred             HHHHHHhcCCCCeeeeeeeccCc--HH---hHHHHHhcCCCeEEEec---c-CCCC-------------------CHHHH
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQNP--QQ---WIEPMADANVDQYTFHV---E-PVDN-------------------VPQVI  105 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~~p--~~---~i~~l~~ag~d~i~~H~---e-~~d~-------------------g~~~i  105 (277)
                      ..+.+|+. -+..+-..++..+|  ++   .++.+.++|+|++++-.   | .+||                   +...+
T Consensus         8 ~~~~~~~~-~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i   86 (262)
T 1rd5_A            8 TMAALMAK-GKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEML   86 (262)
T ss_dssp             HHHHHHHT-TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHhc-CCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            34455543 35567888999988  33   47778889999994432   1 1332                   35678


Q ss_pred             HHHHhhCCCcccc-----hh--hhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc
Q psy11600        106 RQIKEAGMKVGQV-----LQ--DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA  178 (277)
Q Consensus       106 ~~i~~~~~~~~d~-----p~--~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~  178 (277)
                      +++|+.+..|+-+     |.  .+++.+.++|+|.+++|-+   ...+..+++                     ..++..
T Consensus        87 ~~ir~~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~---~~~~~~~~~---------------------~~~~~~  142 (262)
T 1rd5_A           87 REVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDL---PYVAAHSLW---------------------SEAKNN  142 (262)
T ss_dssp             HHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTC---BTTTHHHHH---------------------HHHHHT
T ss_pred             HHHHhcCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCC---ChhhHHHHH---------------------HHHHHc
Confidence            8888886555421     32  2456699999999999866   554443333                     345556


Q ss_pred             CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCc--ccccCHHHHHHHHHhhC
Q psy11600        179 DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQ--KFMQDMMPKVKWLRENY  256 (277)
Q Consensus       179 d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq--~F~~~~~~kI~~l~~~~  256 (277)
                      ++..+..+.|.++        .+.++.+......+...       +++       +|+.|+  .|.+...++++++++..
T Consensus       143 g~~~i~~~a~~t~--------~e~~~~~~~~~~g~v~~-------~s~-------~G~tG~~~~~~~~~~~~i~~v~~~~  200 (262)
T 1rd5_A          143 NLELVLLTTPAIP--------EDRMKEITKASEGFVYL-------VSV-------NGVTGPRANVNPRVESLIQEVKKVT  200 (262)
T ss_dssp             TCEECEEECTTSC--------HHHHHHHHHHCCSCEEE-------ECS-------SCCBCTTSCBCTHHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCC--------HHHHHHHHhcCCCeEEE-------ecC-------CCCCCCCcCCCchHHHHHHHHHhhc
Confidence            6656666788775        23444444444333222       222       676665  66677888999999864


Q ss_pred             CCCeEEEeCCCC-ccCHHHhh
Q psy11600        257 PTLNIEVDGGVG-PNTIDECA  276 (277)
Q Consensus       257 ~~~~I~VDGGI~-~~~~~~~~  276 (277)
                       ++.|.++|||+ +++++++.
T Consensus       201 -~~pI~vgGGI~~~e~~~~~~  220 (262)
T 1rd5_A          201 -NKPVAVGFGISKPEHVKQIA  220 (262)
T ss_dssp             -SSCEEEESCCCSHHHHHHHH
T ss_pred             -CCeEEEECCcCCHHHHHHHH
Confidence             57799999999 89988764

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=98.72  E-value=5.2e-07  Score=81.52  Aligned_cols=167  Identities=18%  Similarity=0.190  Sum_probs=101.1

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH--------------HhHHHHH
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ--------------QWIEPMA   84 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~--------------~~i~~l~   84 (277)
                      +++. +...++.|+|++|++  |+.+++++|.++.+++.+|+. .+  +.+|.|+.--.              +.++.+.
T Consensus        48 s~~~-a~~A~~gGAdRIELc--~~l~~GGlTPS~g~i~~a~~~-~~--ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~  121 (287)
T 3iwp_A           48 SVES-AVNAERGGADRIELC--SGLSEGGTTPSMGVLQVVKQS-VQ--IPVFVMIRPRGGDFLYSDREIEVMKADIRLAK  121 (287)
T ss_dssp             SHHH-HHHHHHHTCSEEEEC--BCGGGTCBCCCHHHHHHHHTT-CC--SCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred             CHHH-HHHHHHhCCCEEEEC--CCCCCCCCCCCHHHHHHHHHh-cC--CCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence            4444 445566799999999  999999999999999999974 44  78999997533              3688888


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhh-HHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWI-EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i-~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      ++|+|.|.|++=..|+.                +..... +.+..++.=-+|||--    ...+                
T Consensus       122 ~~GAdGvVfG~L~~dg~----------------iD~~~~~~Li~~a~~l~vTFHRA----FD~~----------------  165 (287)
T 3iwp_A          122 LYGADGLVFGALTEDGH----------------IDKELCMSLMAICRPLPVTFHRA----FDMV----------------  165 (287)
T ss_dssp             HTTCSEEEECCBCTTSC----------------BCHHHHHHHHHHHTTSCEEECGG----GGGC----------------
T ss_pred             HcCCCEEEEeeeCCCCC----------------cCHHHHHHHHHHcCCCcEEEECc----hhcc----------------
Confidence            88999887774112210                001111 1222334445677742    1110                


Q ss_pred             CCCCHHhHHHHHh-hcCceEEEEecCCCCCc-hhhhhhhhhHHHHHhh-CCCccEEEeCCCCcCcHHHHHH-ccCC
Q psy11600        164 PKTPVDVIAEYIE-SADLVLIMTVEPGFGGQ-KFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK-CLTG  235 (277)
Q Consensus       164 p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq-~~~~~~l~kI~~l~~~-~~~~~i~vdGgV~~~tv~~~~~-~gpg  235 (277)
                       .+|.+.++.+++ .+|.+  ++     +|| .-..+-++.++++.+. ...+.|.+.|||+..|+.++.+ +|..
T Consensus       166 -~d~~~Ale~Li~lGvdrI--LT-----SG~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~~tG~~  233 (287)
T 3iwp_A          166 -HDPMAALETLLTLGFERV--LT-----SGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGAT  233 (287)
T ss_dssp             -SCHHHHHHHHHHHTCSEE--EE-----CTTSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHHHHCCS
T ss_pred             -CCHHHHHHHHHHcCCCEE--EC-----CCCCCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHhhCCC
Confidence             012223333333 33333  33     222 1123334444444433 3568999999999999999877 6665

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=98.71  E-value=3.4e-07  Score=78.15  Aligned_cols=179  Identities=15%  Similarity=0.120  Sum_probs=118.9

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC-CCeeeeeeeccCcHHhHHHHH
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      ..+.|++-..|..+..+..+.+.+.|++.+++...-    |   .+.+.++.+|+.+| ++++-++ .+.++++ ++...
T Consensus        10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~----~---~~~~~i~~ir~~~~~~~~ig~~-~v~~~~~-~~~a~   80 (205)
T 1wa3_A           10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV----P---DADTVIKELSFLKEKGAIIGAG-TVTSVEQ-CRKAV   80 (205)
T ss_dssp             HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS----T---THHHHHHHTHHHHHTTCEEEEE-SCCSHHH-HHHHH
T ss_pred             CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC----h---hHHHHHHHHHHHCCCCcEEEec-ccCCHHH-HHHHH
Confidence            458899999999999999999999999998776541    2   34677999998755 4554443 3557764 67778


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc-cc--hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG-QV--LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA  161 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~-d~--p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~  161 (277)
                      ++|+|++ ++..   ..+.+++..++.....+ .+  |.+ +....++|+|.+.+|..   ...                
T Consensus        81 ~~Gad~i-v~~~---~~~~~~~~~~~~g~~vi~g~~t~~e-~~~a~~~Gad~vk~~~~---~~~----------------  136 (205)
T 1wa3_A           81 ESGAEFI-VSPH---LDEEISQFCKEKGVFYMPGVMTPTE-LVKAMKLGHTILKLFPG---EVV----------------  136 (205)
T ss_dssp             HHTCSEE-ECSS---CCHHHHHHHHHHTCEEECEECSHHH-HHHHHHTTCCEEEETTH---HHH----------------
T ss_pred             HcCCCEE-EcCC---CCHHHHHHHHHcCCcEECCcCCHHH-HHHHHHcCCCEEEEcCc---ccc----------------
Confidence            8999999 6643   23566766666543321 11  222 33345555555555421   000                


Q ss_pred             eCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        162 IKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       162 i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                                                           -++.++++++..+++.+..+|||+.+++.++.++|++.   |+
T Consensus       137 -------------------------------------g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs  179 (205)
T 1wa3_A          137 -------------------------------------GPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGS  179 (205)
T ss_dssp             -------------------------------------HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECH
T ss_pred             -------------------------------------CHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECc
Confidence                                                 02235555555567889999999999999999999996   55


Q ss_pred             cccccC---HHHHHHHHHh
Q psy11600        239 QKFMQD---MMPKVKWLRE  254 (277)
Q Consensus       239 q~F~~~---~~~kI~~l~~  254 (277)
                      ..|.++   ..+.++++++
T Consensus       180 ~i~~~d~~~~~~~~~~~~~  198 (205)
T 1wa3_A          180 ALVKGTPDEVREKAKAFVE  198 (205)
T ss_dssp             HHHCSCHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHH
Confidence            555555   5666666654

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.65  E-value=2.4e-08  Score=87.59  Aligned_cols=182  Identities=12%  Similarity=0.045  Sum_probs=100.8

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC----CH--HHHHHHHh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN----VP--QVIRQIKE  110 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~----g~--~~i~~i~~  110 (277)
                      +|++||..|.-.. |.      ++.++        ...+|.+.++.+.++|++++|++  .+++    ..  ..++++++
T Consensus        10 idl~~g~~V~~~~-g~------~~~~~--------~~~d~~~~a~~~~~~Gad~i~v~--~~d~~~~~~~~~~~i~~i~~   72 (244)
T 1vzw_A           10 VDVRDGQAVRLVH-GE------SGTET--------SYGSPLEAALAWQRSGAEWLHLV--DLDAAFGTGDNRALIAEVAQ   72 (244)
T ss_dssp             EEEETTEEBC---------------CC--------BCCCHHHHHHHHHHTTCSEEEEE--EHHHHHTSCCCHHHHHHHHH
T ss_pred             EEEECCEEEEeec-cc------cccce--------ecCCHHHHHHHHHHcCCCEEEEe--cCchhhcCCChHHHHHHHHH
Confidence            7999999883211 11      11222        13489999999999999999554  3221    11  78999999


Q ss_pred             hCCCcccc------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE
Q psy11600        111 AGMKVGQV------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM  184 (277)
Q Consensus       111 ~~~~~~d~------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m  184 (277)
                      .+..|+.+      |+ .++.+.++|||.|++|.|   ...++....                     +.++..+...++
T Consensus        73 ~~~ipv~v~ggI~~~~-~~~~~l~~Gad~V~lg~~---~l~~p~~~~---------------------~~~~~~g~~~~~  127 (244)
T 1vzw_A           73 AMDIKVELSGGIRDDD-TLAAALATGCTRVNLGTA---ALETPEWVA---------------------KVIAEHGDKIAV  127 (244)
T ss_dssp             HCSSEEEEESSCCSHH-HHHHHHHTTCSEEEECHH---HHHCHHHHH---------------------HHHHHHGGGEEE
T ss_pred             hcCCcEEEECCcCCHH-HHHHHHHcCCCEEEECch---HhhCHHHHH---------------------HHHHHcCCcEEE
Confidence            88777765      55 499999999999999988   555543222                     233333323344


Q ss_pred             EecCC-----CCC-chhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCC
Q psy11600        185 TVEPG-----FGG-QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPT  258 (277)
Q Consensus       185 av~Pg-----t~g-q~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~  258 (277)
                      +++|.     +.| ++......+.++.+.+.  .++..+     .+++      .+++.++.+..   +.++++++.. +
T Consensus       128 ~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~--G~~~i~-----~~~~------~~~~~~~g~~~---~~~~~i~~~~-~  190 (244)
T 1vzw_A          128 GLDVRGTTLRGRGWTRDGGDLYETLDRLNKE--GCARYV-----VTDI------AKDGTLQGPNL---ELLKNVCAAT-D  190 (244)
T ss_dssp             EEEEETTEECCSSSCCCCCBHHHHHHHHHHT--TCCCEE-----EEEC-------------CCCH---HHHHHHHHTC-S
T ss_pred             EEEccCCEEEEcCcccCCCCHHHHHHHHHhC--CCCEEE-----Eecc------CcccccCCCCH---HHHHHHHHhc-C
Confidence            55543     110 00000223333444332  233222     1222      25555565644   4445555443 5


Q ss_pred             CeEEEeCCCCc-cCHHHhhC
Q psy11600        259 LNIEVDGGVGP-NTIDECAK  277 (277)
Q Consensus       259 ~~I~VDGGI~~-~~~~~~~~  277 (277)
                      +.+.++|||+. +++.++.+
T Consensus       191 ipvia~GGI~~~~d~~~~~~  210 (244)
T 1vzw_A          191 RPVVASGGVSSLDDLRAIAG  210 (244)
T ss_dssp             SCEEEESCCCSHHHHHHHHT
T ss_pred             CCEEEECCCCCHHHHHHHHh
Confidence            77999999996 99888753

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=98.58  E-value=2.4e-07  Score=83.87  Aligned_cols=205  Identities=11%  Similarity=-0.019  Sum_probs=119.0

Q ss_pred             HHHHHHHHHcCCCEEEEe---ccc-ccccc-CCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600         21 HSESQNLLDSGADYLHLD---VMD-GTFVP-NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV   95 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~D---imD-g~fvp-~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~   95 (277)
                      .+..+.+.+.|++++|+=   -.| ..|-- ...-.++.++++++. +++|+.+-....+ .++++.+.++|+|+++.+.
T Consensus        31 ~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~-~~~Pvi~~~~~~~-~~~~~~~~~aGad~v~~~~  108 (297)
T 2zbt_A           31 PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAA-VSIPVMAKVRIGH-FVEAMILEAIGVDFIDESE  108 (297)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTT-CSSCEEEEEETTC-HHHHHHHHHTTCSEEEEET
T ss_pred             HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHh-cCCCeEEEeccCC-HHHHHHHHHCCCCEEeeeC
Confidence            466777888999998861   011 00100 011256889999986 7888877665555 6789999999999996665


Q ss_pred             cCCCCCHHHHHHHHhhCC-Ccc--cc--hhhhhHHHHhcCCCeEEeecCCCC-----ChHHHHHHHHHhCCccceeeCCC
Q psy11600         96 EPVDNVPQVIRQIKEAGM-KVG--QV--LQDWIEPMADANVDQYTFHVEPVD-----NVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        96 e~~d~g~~~i~~i~~~~~-~~~--d~--p~~~i~~~~~~g~d~it~H~E~~~-----~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +...  +.+++++++... .++  ++  |+++.. ..++|+|+|++|-|...     +..+..+.++.+.  .-.++++.
T Consensus       109 ~~~~--~~~~~~~~~~~~~i~l~~~v~~~~~~~~-a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~--~~~g~t~~  183 (297)
T 2zbt_A          109 VLTP--ADEEHHIDKWKFKVPFVCGARNLGEALR-RIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIR--YVQSLRED  183 (297)
T ss_dssp             TSCC--SCSSCCCCGGGCSSCEEEEESSHHHHHH-HHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHH--HHHHSCGG
T ss_pred             CCCh--HHHHHHHHHhCCCceEEeecCCHHHHHH-HHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHH--HcCCcCCC
Confidence            4321  234445554321 222  12  677665 58999999999943100     2333333332210  00012222


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCC-CcCcHHHHHHccCCC---CCcc
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~  240 (277)
                      ++.+..                      ...+..+++++++++..+ .+-++++||| +.+++..+.++|++.   |+..
T Consensus       184 ~~~~~~----------------------~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai  241 (297)
T 2zbt_A          184 ELMAYA----------------------KEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGI  241 (297)
T ss_dssp             GHHHHH----------------------HHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGG
T ss_pred             Cchhhh----------------------hcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHH
Confidence            211000                      011223566777776531 2334499999 999999999999985   7777


Q ss_pred             cc-cCHHHHHHHHHh
Q psy11600        241 FM-QDMMPKVKWLRE  254 (277)
Q Consensus       241 F~-~~~~~kI~~l~~  254 (277)
                      |. ++..+.++++++
T Consensus       242 ~~~~dp~~~~~~l~~  256 (297)
T 2zbt_A          242 FKSGDPRKRARAIVR  256 (297)
T ss_dssp             GGSSCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHH
Confidence            75 356566666654

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.56  E-value=9e-07  Score=79.10  Aligned_cols=200  Identities=18%  Similarity=0.201  Sum_probs=120.5

Q ss_pred             ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEec------cccccccCC-----C------CCHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLDV------MDGTFVPNL-----T------FGHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~Di------mDg~fvp~~-----~------~g~~~v~~l~~~~~~~~   66 (277)
                      ..+.|-+.+.|+.  ...+.++.|.+.|+|.+-+++      +||+++.+.     .      -..+.++++|+..|++|
T Consensus        17 ~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~P   96 (262)
T 2ekc_A           17 KALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIP   96 (262)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSC
T ss_pred             ceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence            3467778888876  455667888999999999987      667666431     1      12367999998755888


Q ss_pred             eeeeee-ccCc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         67 FETHMM-VQNP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        67 ~d~Hlm-v~~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +-+  | ..||      +++++.+.++|+|.++++    |..+                                    |
T Consensus        97 i~~--m~y~n~v~~~g~~~f~~~~~~aG~dgvii~----dl~~------------------------------------e  134 (262)
T 2ekc_A           97 FLL--MTYYNPIFRIGLEKFCRLSREKGIDGFIVP----DLPP------------------------------------E  134 (262)
T ss_dssp             EEE--ECCHHHHHHHCHHHHHHHHHHTTCCEEECT----TCCH------------------------------------H
T ss_pred             EEE--EecCcHHHHhhHHHHHHHHHHcCCCEEEEC----CCCH------------------------------------H
Confidence            644  5 4455      567888999999988654    3111                                    1


Q ss_pred             CCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEEecCCCCCch--hh-hhhhhhHHHHHhhCCCccE
Q psy11600        140 PVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMTVEPGFGGQK--FM-QDMMPKVKWLRENYPTLNI  215 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~mav~Pgt~gq~--~~-~~~l~kI~~l~~~~~~~~i  215 (277)
                         ......+.+++.|+..-.-+.|.++.+.+..+.... +++..+++ +|+.|..  +- ++..+.++.+++.. ++.+
T Consensus       135 ---e~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~-~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv  209 (262)
T 2ekc_A          135 ---EAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSV-TGTTGAREKLPYERIKKKVEEYRELC-DKPV  209 (262)
T ss_dssp             ---HHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESS-CC---------CHHHHHHHHHHHHHC-CSCE
T ss_pred             ---HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEec-CCccCCCCCcCcccHHHHHHHHHhhc-CCCE
Confidence               223344445555443333345556665555555443 34444443 3433333  22 44557788888765 6789


Q ss_pred             EEeCCCC-cCcHHHHHHccCCC---CCccccc---CHHHHHHHHH
Q psy11600        216 EVDGGVG-PNTIDECAKCLTGF---GGQKFMQ---DMMPKVKWLR  253 (277)
Q Consensus       216 ~vdGgV~-~~tv~~~~~~gpg~---ggq~F~~---~~~~kI~~l~  253 (277)
                      .+.+||+ .+++.. +..|++.   |+.....   +..++++++.
T Consensus       210 ~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~  253 (262)
T 2ekc_A          210 VVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLV  253 (262)
T ss_dssp             EEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHH
T ss_pred             EEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHH
Confidence            9999998 888887 5667875   5433322   2345555543

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.46  E-value=2.9e-06  Score=76.42  Aligned_cols=185  Identities=15%  Similarity=0.209  Sum_probs=120.1

Q ss_pred             ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEe------ccccccccC---------CC--CCHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLD------VMDGTFVPN---------LT--FGHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~D------imDg~fvp~---------~~--~g~~~v~~l~~~~~~~~   66 (277)
                      .-+.|-+.+.|+.  ...+.++.|.+.|+|.+.+.      ++||+.+.+         ++  -..+.++++|+.++++|
T Consensus        20 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~P   99 (271)
T 3nav_A           20 GAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETP   99 (271)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSC
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence            3488999999964  67788888999999999999      789988764         11  12478999998767888


Q ss_pred             eeeeeeccCc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCC
Q psy11600         67 FETHMMVQNP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        67 ~d~Hlmv~~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~  140 (277)
                      +.+ |-..||      +++++.+.++|+|.+.+. |..                                       +| 
T Consensus       100 ivl-m~Y~n~v~~~g~~~f~~~~~~aGvdGvIip-Dlp---------------------------------------~e-  137 (271)
T 3nav_A          100 IGL-LMYANLVYARGIDDFYQRCQKAGVDSVLIA-DVP---------------------------------------TN-  137 (271)
T ss_dssp             EEE-EECHHHHHHTCHHHHHHHHHHHTCCEEEET-TSC---------------------------------------GG-
T ss_pred             EEE-EecCcHHHHHhHHHHHHHHHHCCCCEEEEC-CCC---------------------------------------HH-
Confidence            875 223343      567888899999987553 211                                       11 


Q ss_pred             CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEE
Q psy11600        141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                        ......+..++.|...-.-+.|.++.+.+....+.. +++-.++ ..|+.|..  +-+++.+.++++++.. ++-+.+
T Consensus       138 --e~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs-~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v  213 (271)
T 3nav_A          138 --ESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLS-RAGVTGAETKANMPVHALLERLQQFD-APPALL  213 (271)
T ss_dssp             --GCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECC-CC--------CCHHHHHHHHHHHHTT-CCCEEE
T ss_pred             --HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEe-ccCCCCcccCCchhHHHHHHHHHHhc-CCCEEE
Confidence              233444555555554444455666666666665554 4544334 44544433  3344556677777765 577889


Q ss_pred             eCCC-CcCcHHHHHHccCCC
Q psy11600        218 DGGV-GPNTIDECAKCLTGF  236 (277)
Q Consensus       218 dGgV-~~~tv~~~~~~gpg~  236 (277)
                      .+|| +.+++.+..+.|++.
T Consensus       214 GfGIst~e~~~~~~~~gADg  233 (271)
T 3nav_A          214 GFGISEPAQVKQAIEAGAAG  233 (271)
T ss_dssp             CSSCCSHHHHHHHHHTTCSE
T ss_pred             ECCCCCHHHHHHHHHcCCCE
Confidence            9999 478887677888885

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=98.46  E-value=1e-06  Score=80.48  Aligned_cols=94  Identities=16%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             eeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccC-CCCCHHHHHHHHhcCCCCeeeeeeeccCc----HHhHHHH
Q psy11600          9 GPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-LTFGHPVVKCLRNKIPKAFFETHMMVQNP----QQWIEPM   83 (277)
Q Consensus         9 ~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p----~~~i~~l   83 (277)
                      ++=++++|+.++++.++.+++.+-...++.+  |  +|. .++|+..+++||+.+ +.++-.+++..|.    ..+++.+
T Consensus        25 ~~LiVALD~~~~~eal~l~~~l~~~v~~vKV--G--~~lf~~~G~~~V~~Lk~~~-g~~IflDlKl~DIpnTv~~av~~~   99 (303)
T 3ru6_A           25 MKLCVALDLSTKEECLQLAKELKNLDIWLKV--G--LRAYLRDGFKFIEELKKVD-DFKIFLDLKFHDIPNTMADACEEV   99 (303)
T ss_dssp             CEEEEECCCSSHHHHHHHHHHTTTSSCEEEE--C--HHHHHHHTHHHHHHHHHHC-CCEEEEEEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHhCCCccEEEe--C--HHHHHHhCHHHHHHHHHhh-CCCEEEEeeeccCchhHHHHHHHH
Confidence            4557899999999999999987644344444  2  354 468999999999863 4444444444553    3456777


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      .++|+|++|+|..   +|+..+++..+
T Consensus       100 a~lGaD~vTVHa~---~G~~~m~aa~e  123 (303)
T 3ru6_A          100 SKLGVDMINIHAS---AGKIAIQEVMT  123 (303)
T ss_dssp             HTTTCSEEEEEGG---GCHHHHHHHHH
T ss_pred             HhcCCCEEEEecc---CCHHHHHHHHH
Confidence            8899999999975   35666766544

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=98.42  E-value=2.3e-06  Score=83.96  Aligned_cols=192  Identities=13%  Similarity=0.071  Sum_probs=120.0

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .|+||.++.+..++.+.++++.+.|++++|+...|..+...    .+..+++++. ++ ...++|++.+   .++...+.
T Consensus        14 lITd~~~~~~~~~l~~~ve~al~~Gv~~vQlR~K~~~~~~~----~~~a~~l~~l-~~-~~~v~liIND---~~dlA~~~   84 (540)
T 3nl6_A           14 LVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFF----IEEALQIKEL-CH-AHNVPLIIND---RIDVAMAI   84 (540)
T ss_dssp             EEC-CTTCCTTCCHHHHHHHHHHTTCSEEEECCSSSCTTHH----HHHHHHHHHH-HH-HTTCCEEECS---CSHHHHHT
T ss_pred             EEECchhccCcchHHHHHHHHHHCCCCEEEEecCCCCHHHH----HHHHHHHHHH-HH-hcCCEEEEeC---cHHHHHHc
Confidence            47888888888899999999999999999999999765432    3445555543 22 3467788876   45566778


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|-+  |+...|.                                           .....+.+.  |...-+|+...+
T Consensus        85 gAdGV--HLgq~dl-------------------------------------------~~~~ar~~l--g~~~iiG~S~ht  117 (540)
T 3nl6_A           85 GADGI--HVGQDDM-------------------------------------------PIPMIRKLV--GPDMVIGWSVGF  117 (540)
T ss_dssp             TCSEE--EECTTSS-------------------------------------------CHHHHHHHH--CTTSEEEEEECS
T ss_pred             CCCEE--EEChhhc-------------------------------------------CHHHHHHHh--CCCCEEEEECCC
Confidence            99988  7665552                                           111122121  211223333333


Q ss_pred             CHHhHHHHHh-h---cCceEEEEecCCCCCchhh--hhhhhhHHHHHhhC-----CCccEEEeCCCCcCcHHHHHH----
Q psy11600        167 PVDVIAEYIE-S---ADLVLIMTVEPGFGGQKFM--QDMMPKVKWLRENY-----PTLNIEVDGGVGPNTIDECAK----  231 (277)
Q Consensus       167 ~~~~i~~~i~-~---~d~vl~mav~Pgt~gq~~~--~~~l~kI~~l~~~~-----~~~~i~vdGgV~~~tv~~~~~----  231 (277)
                       +++...... .   +|++.+..+.|..+-+..-  +--++.++++++..     .++.+...|||+.+++.++.+    
T Consensus       118 -~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~  196 (540)
T 3nl6_A          118 -PEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVS  196 (540)
T ss_dssp             -HHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBC
T ss_pred             -HHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcc
Confidence             344444333 3   7888887777754433321  11134444444432     468899999999999999997    


Q ss_pred             ----ccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        232 ----CLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       232 ----~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                          +|++.   ++..|. ++..+.++++++.
T Consensus       197 ~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~  228 (540)
T 3nl6_A          197 SNGKRSLDGICVVSDIIASLDAAKSTKILRGL  228 (540)
T ss_dssp             TTSSCBCSCEEESHHHHTCTTHHHHHHHHHHH
T ss_pred             cccccCceEEEEeHHHhcCCCHHHHHHHHHHH
Confidence                55654   566665 4677777777753

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.35  E-value=6e-07  Score=78.46  Aligned_cols=160  Identities=8%  Similarity=-0.023  Sum_probs=94.5

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCC----CCH--HHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecCC
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVD----NVP--QVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d----~g~--~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E~  140 (277)
                      ..+|.+.++.+.++|++++|++  .++    +.+  ..++++++.+..|+.+      |+ .++.+.++|||.|++|.+ 
T Consensus        30 ~~d~~~~a~~~~~~Gad~i~v~--~~d~~~~~~~~~~~i~~i~~~~~ipv~v~ggi~~~~-~~~~~l~~Gad~V~lg~~-  105 (244)
T 2y88_A           30 YGSAVDAALGWQRDGAEWIHLV--DLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDE-SLAAALATGCARVNVGTA-  105 (244)
T ss_dssp             EEEHHHHHHHHHHTTCSEEEEE--EHHHHTTSCCCHHHHHHHHHHCSSEEEEESSCCSHH-HHHHHHHTTCSEEEECHH-
T ss_pred             cCCHHHHHHHHHHcCCCEEEEE--cCcccccCCChHHHHHHHHHhcCCcEEEECCCCCHH-HHHHHHHcCCCEEEECch-
Confidence            3489999999999999999655  222    122  8899999988777765      55 499999999999999987 


Q ss_pred             CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCC----C-----CC-chhhhhhhhhHHHHHhhC
Q psy11600        141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPG----F-----GG-QKFMQDMMPKVKWLRENY  210 (277)
Q Consensus       141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pg----t-----~g-q~~~~~~l~kI~~l~~~~  210 (277)
                        ...++.. +                    .+.++..+...++++++.    .     .| ++--....+.++.+.+. 
T Consensus       106 --~l~~p~~-~--------------------~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~-  161 (244)
T 2y88_A          106 --ALENPQW-C--------------------ARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSE-  161 (244)
T ss_dssp             --HHHCHHH-H--------------------HHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHT-
T ss_pred             --HhhChHH-H--------------------HHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhC-
Confidence              5544322 2                    223333332233444442    0     00 00000223334444433 


Q ss_pred             CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCc-cCHHHhh
Q psy11600        211 PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA  276 (277)
Q Consensus       211 ~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~-~~~~~~~  276 (277)
                       .++..+     .+++      .+++.++.+.   ++.++++++. .++.+.++|||+. +++.++.
T Consensus       162 -G~~~i~-----~~~~------~~~~~~~g~~---~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~  212 (244)
T 2y88_A          162 -GCSRFV-----VTDI------TKDGTLGGPN---LDLLAGVADR-TDAPVIASGGVSSLDDLRAIA  212 (244)
T ss_dssp             -TCCCEE-----EEET------TTTTTTSCCC---HHHHHHHHTT-CSSCEEEESCCCSHHHHHHHH
T ss_pred             -CCCEEE-----EEec------CCccccCCCC---HHHHHHHHHh-CCCCEEEECCCCCHHHHHHHH
Confidence             233222     1222      2554445553   4455555554 3677999999996 8888775

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=98.33  E-value=5.5e-07  Score=79.06  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             eeccCcHHhHHHHHhcC--CCeEEEeccC-CCCCHHHHHHHHh-hC-CCccc-----ch---hhhhHHHHhcCCCeEEee
Q psy11600         71 MMVQNPQQWIEPMADAN--VDQYTFHVEP-VDNVPQVIRQIKE-AG-MKVGQ-----VL---QDWIEPMADANVDQYTFH  137 (277)
Q Consensus        71 lmv~~p~~~i~~l~~ag--~d~i~~H~e~-~d~g~~~i~~i~~-~~-~~~~d-----~p---~~~i~~~~~~g~d~it~H  137 (277)
                      +=+.+.++.++.+.+.+  ++|++++.+. ..+|+.+|+++|+ .. ..+.|     .|   ..|++.+.++|+|++|+|
T Consensus        19 lD~~~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh   98 (228)
T 3m47_A           19 MDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVH   98 (228)
T ss_dssp             CCCCSHHHHHHHHHTTTTTCSEEEEEHHHHHHHCTHHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             eCCCCHHHHHHHHHHcCCcccEEEEcHHHHHhcCHHHHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEe
Confidence            33467778888887777  7899766543 2459999999999 43 33444     45   459999999999999999


Q ss_pred             cC
Q psy11600        138 VE  139 (277)
Q Consensus       138 ~E  139 (277)
                      .+
T Consensus        99 ~~  100 (228)
T 3m47_A           99 GF  100 (228)
T ss_dssp             ST
T ss_pred             cc
Confidence            98

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=98.17  E-value=4.2e-05  Score=66.42  Aligned_cols=169  Identities=7%  Similarity=0.035  Sum_probs=100.9

Q ss_pred             HHHHHHHhcCCCCeeeeeeec-------c--CcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc-------
Q psy11600         53 PVVKCLRNKIPKAFFETHMMV-------Q--NPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG-------  116 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv-------~--~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~-------  116 (277)
                      +++++|+   ..+...+-.-.       .  ...+.++.+.++|++++  |++    ++..++++|+.+..|+       
T Consensus         9 ~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i--~~~----~~~~i~~i~~~~~~p~i~~~~~~   79 (234)
T 1yxy_A            9 KLMEQLK---GGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGI--RAN----SVRDIKEIQAITDLPIIGIIKKD   79 (234)
T ss_dssp             HHHHHHT---TSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEE--EEE----SHHHHHHHHTTCCSCEEEECBCC
T ss_pred             HHHHHHh---CCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEe--ecC----CHHHHHHHHHhCCCCEEeeEcCC
Confidence            5566663   24455554443       2  33467888889999999  543    6889999999876654       


Q ss_pred             --c------chhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc--CceEEEEe
Q psy11600        117 --Q------VLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMTV  186 (277)
Q Consensus       117 --d------~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~--d~vl~mav  186 (277)
                        +      .|.++++.+.++|||.|.+|.+   ...+.                .+..+..+.+.++..  +..++  +
T Consensus        80 ~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~---~~~~~----------------~~~~~~~~i~~i~~~~~~~~v~--~  138 (234)
T 1yxy_A           80 YPPQEPFITATMTEVDQLAALNIAVIAMDCT---KRDRH----------------DGLDIASFIRQVKEKYPNQLLM--A  138 (234)
T ss_dssp             CTTSCCCBSCSHHHHHHHHTTTCSEEEEECC---SSCCT----------------TCCCHHHHHHHHHHHCTTCEEE--E
T ss_pred             CCccccccCChHHHHHHHHHcCCCEEEEccc---ccCCC----------------CCccHHHHHHHHHHhCCCCeEE--E
Confidence              1      1678999999999999999998   42110                011222233333333  44433  3


Q ss_pred             cCCCCCchhhhhhhhhHHHHHhhCCCccEE--EeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEe
Q psy11600        187 EPGFGGQKFMQDMMPKVKWLRENYPTLNIE--VDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVD  264 (277)
Q Consensus       187 ~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~--vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VD  264 (277)
                      ++.+.         +.....  .....++.  ..+|++           |+  ++.+....++.++++++.  ++.+.++
T Consensus       139 ~~~t~---------~ea~~a--~~~Gad~i~~~v~g~~-----------~~--~~~~~~~~~~~i~~~~~~--~ipvia~  192 (234)
T 1yxy_A          139 DISTF---------DEGLVA--HQAGIDFVGTTLSGYT-----------PY--SRQEAGPDVALIEALCKA--GIAVIAE  192 (234)
T ss_dssp             ECSSH---------HHHHHH--HHTTCSEEECTTTTSS-----------TT--SCCSSSCCHHHHHHHHHT--TCCEEEE
T ss_pred             eCCCH---------HHHHHH--HHcCCCEEeeeccccC-----------CC--CcCCCCCCHHHHHHHHhC--CCCEEEE
Confidence            44432         112222  12345554  233432           32  233344446777777765  6789999


Q ss_pred             CCCC-ccCHHHhhC
Q psy11600        265 GGVG-PNTIDECAK  277 (277)
Q Consensus       265 GGI~-~~~~~~~~~  277 (277)
                      |||+ .+++.++.+
T Consensus       193 GGI~s~~~~~~~~~  206 (234)
T 1yxy_A          193 GKIHSPEEAKKIND  206 (234)
T ss_dssp             SCCCSHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHH
Confidence            9999 899887753

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=98.13  E-value=6.8e-05  Score=64.57  Aligned_cols=142  Identities=12%  Similarity=0.117  Sum_probs=86.2

Q ss_pred             HhHHHHHhcCCCeEEEeccCCCC--C--HHHHHHHHhhCCCccc-chhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVDN--V--PQVIRQIKEAGMKVGQ-VLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIK  152 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d~--g--~~~i~~i~~~~~~~~d-~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~  152 (277)
                      +.++...++|++++  |++.++.  +  ..+++++++.+..... +..++++.+.++|+|.|++|.+     ....+   
T Consensus        33 ~~~~~~~~~G~~~v--~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v~~~~~~a~~~gad~v~l~~~-----~~~~~---  102 (221)
T 1yad_A           33 ARIIITIQNEVDFI--HIRERSKSAADILKLLDLIFEGGIDKRKLVMNGRVDIALFSTIHRVQLPSG-----SFSPK---  102 (221)
T ss_dssp             HHHHHHHGGGCSEE--EECCTTSCHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHTTTCCEEEECTT-----SCCHH---
T ss_pred             HHHHHHHHCCCCEE--EEccCCCCHHHHHHHHHHHHHhcCcCCeEEEeChHHHHHHcCCCEEEeCCC-----ccCHH---
Confidence            34777788999998  8877654  3  6678888887643222 2446889999999999999854     22222   


Q ss_pred             HhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHc
Q psy11600        153 EAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC  232 (277)
Q Consensus       153 ~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~  232 (277)
                                       .+.....  +++++.++.  +.         +.+....  ....|..+.|.+           
T Consensus       103 -----------------~~~~~~~--~~~ig~sv~--t~---------~~~~~a~--~~gaD~i~~~~~-----------  139 (221)
T 1yad_A          103 -----------------QIRARFP--HLHIGRSVH--SL---------EEAVQAE--KEDADYVLFGHV-----------  139 (221)
T ss_dssp             -----------------HHHHHCT--TCEEEEEEC--SH---------HHHHHHH--HTTCSEEEEECC-----------
T ss_pred             -----------------HHHHHCC--CCEEEEEcC--CH---------HHHHHHH--hCCCCEEEECCc-----------
Confidence                             2222222  566666653  21         1122222  234566654433           


Q ss_pred             cCCCCCccc---ccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        233 LTGFGGQKF---MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       233 gpg~ggq~F---~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                         |+++.+   .+..++.++++++.. ++.+.++||||++|+.++.
T Consensus       140 ---f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI~~~nv~~~~  182 (221)
T 1yad_A          140 ---FETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLRDVK  182 (221)
T ss_dssp             ---C----------CHHHHHHHHHHHC-CSCEEEESSCCGGGHHHHH
T ss_pred             ---cccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHH
Confidence               333332   244567888887654 5679999999999998874

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=98.13  E-value=1.6e-05  Score=70.20  Aligned_cols=91  Identities=12%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             eeccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee--eccCcHHhHHHH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM--MVQNPQQWIEPM   83 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl--mv~~p~~~i~~l   83 (277)
                      +=++++|+.++++.++.+++.+  +++  +|+++.       ..+|++.+++||+.-..+++|.++  +-.....+++.+
T Consensus        10 ~LivALD~~~~~~al~l~~~~~~~v~~~Kvg~~lf-------~~~G~~~v~~L~~~g~~iflDlK~~DI~nTv~~~~~~~   82 (239)
T 3tr2_A           10 KVIVAIDAGTVEQARAQINPLTPELCHLKIGSILF-------TRYGPAFVEELMQKGYRIFLDLKFYDIPQTVAGACRAV   82 (239)
T ss_dssp             CEEEECCCSSHHHHHHHHTTCCTTTCEEEEEHHHH-------HHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred             CeEEEeCCCCHHHHHHHHHHhCCcccEEEeCHHHH-------HhhCHHHHHHHHhcCCCEEEEecccccchHHHHHHHHH
Confidence            4478999999999999988764  345  476663       468999999999853345555554  222234467788


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      .++|+|++|+|.-   +|+..+++.++
T Consensus        83 ~~~gad~vTvh~~---~G~~~~~~a~~  106 (239)
T 3tr2_A           83 AELGVWMMNIHIS---GGRTMMETVVN  106 (239)
T ss_dssp             HHTTCSEEEEEGG---GCHHHHHHHHH
T ss_pred             HhCCCCEEEEecc---CCHHHHHHHHH
Confidence            9999999999963   46677777654

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=98.06  E-value=2.9e-06  Score=73.64  Aligned_cols=76  Identities=9%  Similarity=0.195  Sum_probs=52.8

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeee--eccCcHHhHHHHHhcCCCe
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHM--MVQNPQQWIEPMADANVDQ   90 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl--mv~~p~~~i~~l~~ag~d~   90 (277)
                      .|..++++.++.+++. .++   ++..  ..|.  . ||++.+++||+.-..+++|+++  +-..+..+++.+.++|+|+
T Consensus        16 ~D~~~~~~a~~i~~~~-~~~---~~~Kvg~~l~--~-~G~~~v~~l~~~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~   88 (213)
T 1vqt_A           16 VLSLDMEDPIRFIDEN-GSF---EVVKVGHNLA--I-HGKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIG   88 (213)
T ss_dssp             EEECCSSSHHHHHHHH-CCC---SEEEECHHHH--T-TCTHHHHHHHTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEE
T ss_pred             CCCCCHHHHHHHHHHh-CCC---CEEEECHHHH--h-hCHHHHHHHHHCCCCEEEEeecccCchHHHHHHHHHHHCCCCE
Confidence            5677777777777766 332   4444  2333  4 8999999999853456666655  3455666788888899999


Q ss_pred             EEEeccC
Q psy11600         91 YTFHVEP   97 (277)
Q Consensus        91 i~~H~e~   97 (277)
                      +|+|...
T Consensus        89 vTvh~~~   95 (213)
T 1vqt_A           89 FTVHSCA   95 (213)
T ss_dssp             EEEEGGG
T ss_pred             EEEeccC
Confidence            9999764

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=98.05  E-value=0.0004  Score=59.69  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=113.2

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.|.+-..|..++.+-++.+.+.|++++.+-.-+       ..+.+.++.+++  +++.+-++. +.+. +.++...++
T Consensus        14 ~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~-------~~~~~~i~~~~~--~~~~~gag~-vl~~-d~~~~A~~~   82 (207)
T 2yw3_A           14 RLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRT-------EKGLEALKALRK--SGLLLGAGT-VRSP-KEAEAALEA   82 (207)
T ss_dssp             CEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSS-------THHHHHHHHHTT--SSCEEEEES-CCSH-HHHHHHHHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hHHHHHHHHHhC--CCCEEEeCe-EeeH-HHHHHHHHc
Confidence            57788777788888899999999999998776321       124577888887  888888888 4444 778889999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |+|++  |.-..|  +.+++..+                                           ..|...-.|  ..|
T Consensus        83 GAd~v--~~~~~d--~~v~~~~~-------------------------------------------~~g~~~i~G--~~t  113 (207)
T 2yw3_A           83 GAAFL--VSPGLL--EEVAALAQ-------------------------------------------ARGVPYLPG--VLT  113 (207)
T ss_dssp             TCSEE--EESSCC--HHHHHHHH-------------------------------------------HHTCCEEEE--ECS
T ss_pred             CCCEE--EcCCCC--HHHHHHHH-------------------------------------------HhCCCEEec--CCC
Confidence            99999  644333  23333333                                           222221111  111


Q ss_pred             CHHhHHHHHh-hcCceEEEEecCCCC--CchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcc
Q psy11600        167 PVDVIAEYIE-SADLVLIMTVEPGFG--GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQK  240 (277)
Q Consensus       167 ~~~~i~~~i~-~~d~vl~mav~Pgt~--gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~  240 (277)
                       .+++..... -+|++-   +-|...  |       ++-++.++...+++.+...|||+.+|+.++.++|+..   |+..
T Consensus       114 -~~e~~~A~~~Gad~v~---~fpa~~~gG-------~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai  182 (207)
T 2yw3_A          114 -PTEVERALALGLSALK---FFPAEPFQG-------VRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWL  182 (207)
T ss_dssp             -HHHHHHHHHTTCCEEE---ETTTTTTTH-------HHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGG
T ss_pred             -HHHHHHHHHCCCCEEE---EecCccccC-------HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEEehhh
Confidence             112211111 234332   233211  1       2346677777788999999999999999999999885   5566


Q ss_pred             cccC---HHHHHHHHHhh
Q psy11600        241 FMQD---MMPKVKWLREN  255 (277)
Q Consensus       241 F~~~---~~~kI~~l~~~  255 (277)
                      |.++   ..++.+++.+.
T Consensus       183 ~~~d~~~i~~~a~~~~~~  200 (207)
T 2yw3_A          183 LQGNLEAVRAKVRAAKAL  200 (207)
T ss_dssp             GSSCHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHH
Confidence            6544   45566666554

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=98.03  E-value=7.6e-05  Score=64.13  Aligned_cols=159  Identities=11%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             CeeeeeeeccC-------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc---------------chhhh
Q psy11600         65 AFFETHMMVQN-------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ---------------VLQDW  122 (277)
Q Consensus        65 ~~~d~Hlmv~~-------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d---------------~p~~~  122 (277)
                      +.++|-.....       +.+.++.+.++|++++  |.+    +++.++++|+.+..|+.               .+.++
T Consensus         7 ~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i--~~~----~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~   80 (223)
T 1y0e_A            7 LIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGI--RAN----TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE   80 (223)
T ss_dssp             EEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEE--EEE----SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHH
T ss_pred             eEEEecCCCCCCCCCCccHHHHHHHHHHCCCeee--ccC----CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHH
Confidence            44555555552       2345777888999999  543    68899999999876651               14678


Q ss_pred             hHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc--CceEEEEecCCCCCchhhhhhh
Q psy11600        123 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA--DLVLIMTVEPGFGGQKFMQDMM  200 (277)
Q Consensus       123 i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~--d~vl~mav~Pgt~gq~~~~~~l  200 (277)
                      ++.+.++|+|.+++|.+   ...                 +|..++..+.+.+++.  ++.++  +++.+.         
T Consensus        81 i~~~~~~Gad~v~l~~~---~~~-----------------~p~~~~~~~i~~~~~~~~~~~v~--~~~~t~---------  129 (223)
T 1y0e_A           81 VDELIESQCEVIALDAT---LQQ-----------------RPKETLDELVSYIRTHAPNVEIM--ADIATV---------  129 (223)
T ss_dssp             HHHHHHHTCSEEEEECS---CSC-----------------CSSSCHHHHHHHHHHHCTTSEEE--EECSSH---------
T ss_pred             HHHHHhCCCCEEEEeee---ccc-----------------CcccCHHHHHHHHHHhCCCceEE--ecCCCH---------
Confidence            99999999999999998   421                 1111222233334443  55443  344431         


Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCccccc----CHHHHHHHHHhhCCCCeEEEeCCC-CccCHHHh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQ----DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDEC  275 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~----~~~~kI~~l~~~~~~~~I~VDGGI-~~~~~~~~  275 (277)
                      +....+.+  ...++..   ++          .+|+.++.+..    ..++.++++++.. ++.+.++||| |.+++.++
T Consensus       130 ~e~~~~~~--~G~d~i~---~~----------~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~  193 (223)
T 1y0e_A          130 EEAKNAAR--LGFDYIG---TT----------LHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRV  193 (223)
T ss_dssp             HHHHHHHH--TTCSEEE---CT----------TTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHH
T ss_pred             HHHHHHHH--cCCCEEE---eC----------CCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHH
Confidence            11222222  2234431   11          24454444422    2345666666553 5789999999 89998876


Q ss_pred             h
Q psy11600        276 A  276 (277)
Q Consensus       276 ~  276 (277)
                      .
T Consensus       194 ~  194 (223)
T 1y0e_A          194 M  194 (223)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=98.01  E-value=1.9e-05  Score=67.21  Aligned_cols=82  Identities=7%  Similarity=0.048  Sum_probs=55.2

Q ss_pred             eeeeeeccCc---HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcc---cc--hhhhhHHHHhcCCCeEEe
Q psy11600         67 FETHMMVQNP---QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVG---QV--LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        67 ~d~Hlmv~~p---~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~---d~--p~~~i~~~~~~g~d~it~  136 (277)
                      +-+=+...++   .+.++.+.++|++++.+|++. .++...++.+|+..  ...+   .+  |++ ++...++|||++ +
T Consensus        12 ~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~-~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~-~~~a~~~Gad~i-v   88 (205)
T 1wa3_A           12 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV-PDADTVIKELSFLKEKGAIIGAGTVTSVEQ-CRKAVESGAEFI-V   88 (205)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS-TTHHHHHHHTHHHHHTTCEEEEESCCSHHH-HHHHHHHTCSEE-E
T ss_pred             EEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC-hhHHHHHHHHHHHCCCCcEEEecccCCHHH-HHHHHHcCCCEE-E
Confidence            4444444444   446888888999999999886 45677899998874  2222   21  544 577788999999 8


Q ss_pred             ecCCCCChHHHHHHHHHh
Q psy11600        137 HVEPVDNVPQVIRQIKEA  154 (277)
Q Consensus       137 H~E~~~~~~~~~~~I~~~  154 (277)
                      +..   ....+++..++.
T Consensus        89 ~~~---~~~~~~~~~~~~  103 (205)
T 1wa3_A           89 SPH---LDEEISQFCKEK  103 (205)
T ss_dssp             CSS---CCHHHHHHHHHH
T ss_pred             cCC---CCHHHHHHHHHc
Confidence            765   445566666554

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=97.90  E-value=0.0013  Score=58.38  Aligned_cols=174  Identities=16%  Similarity=0.126  Sum_probs=103.3

Q ss_pred             HHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEeccCC----CC-------------------CHHHHH
Q psy11600         55 VKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHVEPV----DN-------------------VPQVIR  106 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~e~~----d~-------------------g~~~i~  106 (277)
                      .+.+|+. -+..+-.|++..+|..     .++.+.++|+|.|-+-+-..    ||                   ...+++
T Consensus         8 f~~~~~~-~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~   86 (262)
T 2ekc_A            8 FTELKEK-REKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSE   86 (262)
T ss_dssp             HHHHHHH-TBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHhc-CCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3455543 3456788999988873     47788899999996654222    22                   124578


Q ss_pred             HHHhhC-CCcccc-----h------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHH
Q psy11600        107 QIKEAG-MKVGQV-----L------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEY  174 (277)
Q Consensus       107 ~i~~~~-~~~~d~-----p------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~  174 (277)
                      ++|+.. ..|+-+     |      +++++..+++|+|.+.++--   ...+..+++                     +.
T Consensus        87 ~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl---~~ee~~~~~---------------------~~  142 (262)
T 2ekc_A           87 TLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDL---PPEEAEELK---------------------AV  142 (262)
T ss_dssp             HHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTC---CHHHHHHHH---------------------HH
T ss_pred             HHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCC---CHHHHHHHH---------------------HH
Confidence            888775 444321     2      67888899999998888632   333322222                     34


Q ss_pred             HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC-CC-cccc-cCHHHHHHH
Q psy11600        175 IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF-GG-QKFM-QDMMPKVKW  251 (277)
Q Consensus       175 i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~-gg-q~F~-~~~~~kI~~  251 (277)
                      ++..++-++..+.|.++.        ++++.+.+....+...+  ++            .|. |. ..+. ++..+.+++
T Consensus       143 ~~~~gl~~i~l~~p~t~~--------~rl~~ia~~a~gfiy~v--s~------------~g~TG~~~~~~~~~~~~~v~~  200 (262)
T 2ekc_A          143 MKKYVLSFVPLGAPTSTR--------KRIKLICEAADEMTYFV--SV------------TGTTGAREKLPYERIKKKVEE  200 (262)
T ss_dssp             HHHTTCEECCEECTTCCH--------HHHHHHHHHCSSCEEEE--SS------------CC---------CHHHHHHHHH
T ss_pred             HHHcCCcEEEEeCCCCCH--------HHHHHHHHhCCCCEEEE--ec------------CCccCCCCCcCcccHHHHHHH
Confidence            455554444445676652        34555555555553322  11            232 22 2333 445688888


Q ss_pred             HHhhCCCCeEEEeCCCC-ccCHHHhh
Q psy11600        252 LRENYPTLNIEVDGGVG-PNTIDECA  276 (277)
Q Consensus       252 l~~~~~~~~I~VDGGI~-~~~~~~~~  276 (277)
                      +|+.. +..+.|+|||+ +++++++.
T Consensus       201 vr~~~-~~pv~vG~GI~t~e~~~~~~  225 (262)
T 2ekc_A          201 YRELC-DKPVVVGFGVSKKEHAREIG  225 (262)
T ss_dssp             HHHHC-CSCEEEESSCCSHHHHHHHH
T ss_pred             HHhhc-CCCEEEeCCCCCHHHHHHHH
Confidence            88865 56799999998 88887753

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.89  E-value=0.0017  Score=56.49  Aligned_cols=167  Identities=15%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.|=+-..|..++.+-++.+.+.|++.+.+..-+       ..+.+.++.+++.++++.+-+.. +.++ +.++...++
T Consensus        18 ~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~l~vgaGt-vl~~-d~~~~A~~a   88 (224)
T 1vhc_A           18 KIVPVIALDNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRPDFLIAAGT-VLTA-EQVVLAKSS   88 (224)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEES-CCSH-HHHHHHHHH
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccC-------chHHHHHHHHHHhCcCcEEeeCc-EeeH-HHHHHHHHC
Confidence            35565556677888888999999999998887322       23567899999999998888886 4443 778889999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCC--cc-cchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMK--VG-QVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~-d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      |+|.+  |.-..|  +.+++..|+....  +. ..|.+. ....++|+|++.|                           
T Consensus        89 GAd~v--~~p~~d--~~v~~~ar~~g~~~i~Gv~t~~e~-~~A~~~Gad~vk~---------------------------  136 (224)
T 1vhc_A           89 GADFV--VTPGLN--PKIVKLCQDLNFPITPGVNNPMAI-EIALEMGISAVKF---------------------------  136 (224)
T ss_dssp             TCSEE--ECSSCC--HHHHHHHHHTTCCEECEECSHHHH-HHHHHTTCCEEEE---------------------------
T ss_pred             CCCEE--EECCCC--HHHHHHHHHhCCCEEeccCCHHHH-HHHHHCCCCEEEE---------------------------
Confidence            99999  754333  3344444432211  10 002211 1112233333332                           


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHc-cCCC--CCcc
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC-LTGF--GGQK  240 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~-gpg~--ggq~  240 (277)
                                             -|...   .-  -++.++.++...+++.+..-|||+.+|+.++.++ |...  ||..
T Consensus       137 -----------------------Fpa~~---~g--G~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~gS~i  188 (224)
T 1vhc_A          137 -----------------------FPAEA---SG--GVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWF  188 (224)
T ss_dssp             -----------------------TTTTT---TT--HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGG
T ss_pred             -----------------------eeCcc---cc--CHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEEEchh
Confidence                                   23110   00  0345677777778899999999999999999998 6554  4444


Q ss_pred             cc
Q psy11600        241 FM  242 (277)
Q Consensus       241 F~  242 (277)
                      +.
T Consensus       189 ~~  190 (224)
T 1vhc_A          189 VE  190 (224)
T ss_dssp             GC
T ss_pred             cC
Confidence            43

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.89  E-value=8.6e-05  Score=64.92  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHh
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKE  110 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~  110 (277)
                      -+|++||..|.-..|.        +    .     -...+|.+.++.+.++|+++++++--...+     ....++++++
T Consensus         9 ~id~~~g~~v~~~~~~--------~----~-----~~~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~   71 (253)
T 1thf_D            9 CLDVKDGRVVKGSNFE--------N----L-----RDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAE   71 (253)
T ss_dssp             EEEEETTEECCCSCCT--------T----S-----SCTTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHT
T ss_pred             EEEEECCEEEEeeccc--------c----e-----eeccCHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHH
Confidence            3899999988554431        1    1     144689999999999999999766211121     4667888888


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecC
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E  139 (277)
                      .+..|+.+     ..+.++.+.++|||.+.+|.+
T Consensus        72 ~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~  105 (253)
T 1thf_D           72 QIDIPFTVGGGIHDFETASELILRGADKVSINTA  105 (253)
T ss_dssp             TCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            77777654     334588899999999999876

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.88  E-value=0.00088  Score=57.93  Aligned_cols=163  Identities=12%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.|-+=..|..++-+-++.+.+.|++++.+..-+       ..+.+.++.+++.++++.+-+.. +.+. +.++...++
T Consensus        17 ~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~vgagt-vi~~-d~~~~A~~a   87 (214)
T 1wbh_A           17 PVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVPEAIVGAGT-VLNP-QQLAEVTEA   87 (214)
T ss_dssp             SEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCTTSEEEEES-CCSH-HHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhHHHHHHHHHHHCcCCEEeeCE-EEEH-HHHHHHHHc
Confidence            46666666788888888999999999998887322       23567899999889998888887 5554 678889999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeE-EeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQY-TFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~i-t~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      |+|++  |.-..|  +.+++..++                  .|.+++ ..|     ++.++.+.. +            
T Consensus        88 GAd~v--~~p~~d--~~v~~~~~~------------------~g~~~i~G~~-----t~~e~~~A~-~------------  127 (214)
T 1wbh_A           88 GAQFA--ISPGLT--EPLLKAATE------------------GTIPLIPGIS-----TVSELMLGM-D------------  127 (214)
T ss_dssp             TCSCE--EESSCC--HHHHHHHHH------------------SSSCEEEEES-----SHHHHHHHH-H------------
T ss_pred             CCCEE--EcCCCC--HHHHHHHHH------------------hCCCEEEecC-----CHHHHHHHH-H------------
Confidence            99999  644333  222222222                  222222 111     222221111 1            


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHc-cCCC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC-LTGF  236 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~-gpg~  236 (277)
                                .-+|++-   +-|..+   .-  -++.++.++...+++.+..-|||+.+|+.++.++ |...
T Consensus       128 ----------~Gad~v~---~Fpa~~---~g--G~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~  181 (214)
T 1wbh_A          128 ----------YGLKEFK---FFPAEA---NG--GVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLC  181 (214)
T ss_dssp             ----------TTCCEEE---ETTTTT---TT--HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSC
T ss_pred             ----------CCCCEEE---EecCcc---cc--CHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeE
Confidence                      1133322   233111   00  0344677777778899999999999999999998 5554

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=97.84  E-value=0.00023  Score=62.83  Aligned_cols=182  Identities=16%  Similarity=0.101  Sum_probs=103.7

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccc----cccCCCCCH----HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCC
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGT----FVPNLTFGH----PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVD   89 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~----fvp~~~~g~----~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d   89 (277)
                      .++.+.++.+.+.|++++|+=-=+..    |-   ....    +..+++++. ++ ...+.+++.+..+.   ..+.|+|
T Consensus        43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~---~l~~~~~~~~a~~l~~l-~~-~~~~~liInd~~~l---A~~~gAd  114 (243)
T 3o63_A           43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFG---PLQARDELAACEILADA-AH-RYGALFAVNDRADI---ARAAGAD  114 (243)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHC---SCCHHHHHHHHHHHHHH-HH-HTTCEEEEESCHHH---HHHHTCS
T ss_pred             chHHHHHHHHHHCCCCEEEEccCCCCcccccc---CCCHHHHHHHHHHHHHH-HH-hhCCEEEEeCHHHH---HHHhCCC
Confidence            46888999888999999998654411    00   0111    122334432 11 23577888776654   4566999


Q ss_pred             eEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHH
Q psy11600         90 QYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVD  169 (277)
Q Consensus        90 ~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~  169 (277)
                      .+  |+...|.....+                                           +.+  .+...-+|+.+.++ +
T Consensus       115 GV--HLg~~dl~~~~~-------------------------------------------r~~--~~~~~~iG~S~ht~-~  146 (243)
T 3o63_A          115 VL--HLGQRDLPVNVA-------------------------------------------RQI--LAPDTLIGRSTHDP-D  146 (243)
T ss_dssp             EE--EECTTSSCHHHH-------------------------------------------HHH--SCTTCEEEEEECSH-H
T ss_pred             EE--EecCCcCCHHHH-------------------------------------------HHh--hCCCCEEEEeCCCH-H
Confidence            98  877655321111                                           111  12122233333332 2


Q ss_pred             hHHHH-HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-c
Q psy11600        170 VIAEY-IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-Q  243 (277)
Q Consensus       170 ~i~~~-i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~  243 (277)
                      ++... -..+|++.+..+.|..+-+...+.-++.++++++.. .++-+...|||+.+++.++.++|++.   ++..|. +
T Consensus       147 Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a~  226 (243)
T 3o63_A          147 QVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSAD  226 (243)
T ss_dssp             HHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTCS
T ss_pred             HHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCCC
Confidence            22222 234666665555444322222223356677776543 47889999999999999999999996   666666 5


Q ss_pred             CHHHHHHHHHhh
Q psy11600        244 DMMPKVKWLREN  255 (277)
Q Consensus       244 ~~~~kI~~l~~~  255 (277)
                      +..+.++++++.
T Consensus       227 dp~~a~~~l~~~  238 (243)
T 3o63_A          227 DPRAAAEQLRSA  238 (243)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            778888887753

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=97.82  E-value=0.00044  Score=62.42  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=94.7

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCC---CC---CHHHHHHHHhhCCCcccc---h---------------hhhhHHHHh
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPV---DN---VPQVIRQIKEAGMKVGQV---L---------------QDWIEPMAD  128 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~---d~---g~~~i~~i~~~~~~~~d~---p---------------~~~i~~~~~  128 (277)
                      +.+++. +....++|||+|  ++...   .|   ++.+++++++....|+-+   |               .+-|+.+.+
T Consensus        46 ~~s~~~-a~~A~~gGAdRI--ELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~  122 (287)
T 3iwp_A           46 VDSVES-AVNAERGGADRI--ELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKL  122 (287)
T ss_dssp             ESSHHH-HHHHHHHTCSEE--EECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             eCCHHH-HHHHHHhCCCEE--EECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHH
Confidence            334443 445677899999  54421   12   899999999977665432   2               357899999


Q ss_pred             cCCCeEEeec---CCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHH
Q psy11600        129 ANVDQYTFHV---EPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKW  205 (277)
Q Consensus       129 ~g~d~it~H~---E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~  205 (277)
                      +|||.|.|+.   |..-+.....++++..+   ++                      .+++++.|.   ...+-.+-+++
T Consensus       123 ~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~---~l----------------------~vTFHRAFD---~~~d~~~Ale~  174 (287)
T 3iwp_A          123 YGADGLVFGALTEDGHIDKELCMSLMAICR---PL----------------------PVTFHRAFD---MVHDPMAALET  174 (287)
T ss_dssp             TTCSEEEECCBCTTSCBCHHHHHHHHHHHT---TS----------------------CEEECGGGG---GCSCHHHHHHH
T ss_pred             cCCCEEEEeeeCCCCCcCHHHHHHHHHHcC---CC----------------------cEEEECchh---ccCCHHHHHHH
Confidence            9999999995   32224455556666543   11                      234555432   11223444566


Q ss_pred             HHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh-CCCCeEEEeCCCCccCHHHhh
Q psy11600        206 LRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       206 l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~-~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.++  +++.++-.                 |++.-..+-++.+++|.++ ...+.|.++||||.+|++++.
T Consensus       175 Li~l--GvdrILTS-----------------G~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~  227 (287)
T 3iwp_A          175 LLTL--GFERVLTS-----------------GCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRIL  227 (287)
T ss_dssp             HHHH--TCSEEEEC-----------------TTSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHH
T ss_pred             HHHc--CCCEEECC-----------------CCCCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHH
Confidence            6554  45544311                 2222224556677776654 346899999999999998874

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=97.81  E-value=0.00025  Score=63.63  Aligned_cols=173  Identities=11%  Similarity=0.072  Sum_probs=114.3

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc----hhhh-hHHHHhcCCCeEEeecCCCC--ChH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV----LQDW-IEPMADANVDQYTFHVEPVD--NVP  145 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~----p~~~-i~~~~~~g~d~it~H~E~~~--~~~  145 (277)
                      +|.+..+.+.++|++++++.-|..  .|.+..++++|+....|+..    ...| ++...++|||.|.+....-.  ...
T Consensus        73 ~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~  152 (272)
T 3qja_A           73 DPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLV  152 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence            688889999999999997765543  23688999999988777643    4555 88889999999998643000  233


Q ss_pred             HHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCCC-
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-  222 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~-  222 (277)
                      .+.+..++.|+..-+.+   .+.+++...+. .+|+   +.+|+.. ...|- .-++.+.++.+..+ ++.+..-|||+ 
T Consensus       153 ~l~~~a~~lGl~~lvev---~t~ee~~~A~~~Gad~---IGv~~r~-l~~~~-~dl~~~~~l~~~v~~~~pvVaegGI~t  224 (272)
T 3qja_A          153 SMLDRTESLGMTALVEV---HTEQEADRALKAGAKV---IGVNARD-LMTLD-VDRDCFARIAPGLPSSVIRIAESGVRG  224 (272)
T ss_dssp             HHHHHHHHTTCEEEEEE---SSHHHHHHHHHHTCSE---EEEESBC-TTTCC-BCTTHHHHHGGGSCTTSEEEEESCCCS
T ss_pred             HHHHHHHHCCCcEEEEc---CCHHHHHHHHHCCCCE---EEECCCc-ccccc-cCHHHHHHHHHhCcccCEEEEECCCCC
Confidence            45556666665543332   23455544432 2443   3445422 11121 12455666666665 67888899998 


Q ss_pred             cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        223 PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       223 ~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      .+++..+.++|++.   |+..+. ++..+.+++|.+.
T Consensus       225 ~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~~  261 (272)
T 3qja_A          225 TADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTA  261 (272)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHhh
Confidence            88999999999884   666665 5788888888764

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=97.78  E-value=0.002  Score=56.09  Aligned_cols=166  Identities=11%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      |.|=+-..|..++-+-++.+.+.|++.+.+..-+       ..+.+.++.+++.+|++.+-+.. +.+. +.++...++|
T Consensus        28 ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~igagt-vl~~-d~~~~A~~aG   98 (225)
T 1mxs_A           28 ILPVITIAREEDILPLADALAAGGIRTLEVTLRS-------QHGLKAIQVLREQRPELCVGAGT-VLDR-SMFAAVEAAG   98 (225)
T ss_dssp             EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSS-------THHHHHHHHHHHHCTTSEEEEEC-CCSH-HHHHHHHHHT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHhCcccEEeeCe-EeeH-HHHHHHHHCC
Confidence            4554445577778888999999999998887322       23457899899889998888887 4444 6788899999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCC--cc-cchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMK--VG-QVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~-d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                      +|++  |.-..|  +.+++..++....  +. ..|.+. ....++|+|++.|                            
T Consensus        99 Ad~v--~~p~~d--~~v~~~~~~~g~~~i~G~~t~~e~-~~A~~~Gad~vk~----------------------------  145 (225)
T 1mxs_A           99 AQFV--VTPGIT--EDILEAGVDSEIPLLPGISTPSEI-MMGYALGYRRFKL----------------------------  145 (225)
T ss_dssp             CSSE--ECSSCC--HHHHHHHHHCSSCEECEECSHHHH-HHHHTTTCCEEEE----------------------------
T ss_pred             CCEE--EeCCCC--HHHHHHHHHhCCCEEEeeCCHHHH-HHHHHCCCCEEEE----------------------------
Confidence            9999  654333  3333333322211  10 002211 1112233333333                            


Q ss_pred             CCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH-ccCCC--CCccc
Q psy11600        165 KTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-CLTGF--GGQKF  241 (277)
Q Consensus       165 ~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~-~gpg~--ggq~F  241 (277)
                                            -|   .+...  =++.++.++...+++.+..-|||+.+|+.++.+ .|++.  ||..|
T Consensus       146 ----------------------FP---a~~~~--G~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~gSai~  198 (225)
T 1mxs_A          146 ----------------------FP---AEISG--GVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWML  198 (225)
T ss_dssp             ----------------------TT---HHHHT--HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTS
T ss_pred             ----------------------cc---Ccccc--CHHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEEEchhc
Confidence                                  22   10000  034466777777889999999999999999999 67875  45555


Q ss_pred             c
Q psy11600        242 M  242 (277)
Q Consensus       242 ~  242 (277)
                      .
T Consensus       199 ~  199 (225)
T 1mxs_A          199 D  199 (225)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=97.74  E-value=0.0017  Score=58.27  Aligned_cols=172  Identities=13%  Similarity=0.152  Sum_probs=105.9

Q ss_pred             HHHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEeccC----CCC-------------------CHHHH
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHVEP----VDN-------------------VPQVI  105 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~e~----~d~-------------------g~~~i  105 (277)
                      ..+++|+. -+..+-.+++..+|.-     .++.+.++|+|++.+-+--    .||                   ..+++
T Consensus        10 ~f~~~~~~-~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v   88 (271)
T 3nav_A           10 LFQRLSAA-QQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELI   88 (271)
T ss_dssp             HHHHHHHT-TBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHhc-CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            34556654 4567888999999743     3777888999999555332    244                   24577


Q ss_pred             HHHHhh-CCCccc-c----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHH
Q psy11600        106 RQIKEA-GMKVGQ-V----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAE  173 (277)
Q Consensus       106 ~~i~~~-~~~~~d-~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~  173 (277)
                      +++|+. ...|+- +          .++|++.++++|+|.+.+.=-   .+++                     .+.+.+
T Consensus        89 ~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDl---p~ee---------------------~~~~~~  144 (271)
T 3nav_A           89 AQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADV---PTNE---------------------SQPFVA  144 (271)
T ss_dssp             HHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTS---CGGG---------------------CHHHHH
T ss_pred             HHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCC---CHHH---------------------HHHHHH
Confidence            777775 444432 2          366777788888887776311   1111                     123445


Q ss_pred             HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCC--cccccCHHHHHHH
Q psy11600        174 YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGG--QKFMQDMMPKVKW  251 (277)
Q Consensus       174 ~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~gg--q~F~~~~~~kI~~  251 (277)
                      +++..++-++..+.|.++        .++++.+.+....+-..|    .          ..|.-|  +.+.++..+.+++
T Consensus       145 ~~~~~gl~~I~lvap~t~--------~eri~~i~~~~~gfiY~v----s----------~~GvTG~~~~~~~~~~~~v~~  202 (271)
T 3nav_A          145 AAEKFGIQPIFIAPPTAS--------DETLRAVAQLGKGYTYLL----S----------RAGVTGAETKANMPVHALLER  202 (271)
T ss_dssp             HHHHTTCEEEEEECTTCC--------HHHHHHHHHHCCSCEEEC----C----------CC--------CCHHHHHHHHH
T ss_pred             HHHHcCCeEEEEECCCCC--------HHHHHHHHHHCCCeEEEE----e----------ccCCCCcccCCchhHHHHHHH
Confidence            667777777777788775        356777766666663332    1          133322  2344456677888


Q ss_pred             HHhhCCCCeEEEeCCCC-ccCHH
Q psy11600        252 LRENYPTLNIEVDGGVG-PNTID  273 (277)
Q Consensus       252 l~~~~~~~~I~VDGGI~-~~~~~  273 (277)
                      +|+.. +.-+.|.|||+ +++++
T Consensus       203 vr~~~-~~Pv~vGfGIst~e~~~  224 (271)
T 3nav_A          203 LQQFD-APPALLGFGISEPAQVK  224 (271)
T ss_dssp             HHHTT-CCCEEECSSCCSHHHHH
T ss_pred             HHHhc-CCCEEEECCCCCHHHHH
Confidence            88765 56799999995 78887

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=97.71  E-value=8.5e-05  Score=66.18  Aligned_cols=90  Identities=13%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             eeccccCcccHHHHHHHHHHcC--CCE--EEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH----hHH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSG--ADY--LHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ----WIE   81 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~--~~~--~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~----~i~   81 (277)
                      +=|+++|+.++++.++.+++.+  +++  +|++++       ..+|++.+++||+.  +.++-.+++..|..+    +++
T Consensus        29 ~LivALD~~~~~~al~l~~~l~~~v~~~KvG~~l~-------~~~G~~~v~~Lk~~--g~~VflDlK~~DIpnTv~~a~~   99 (255)
T 3ldv_A           29 KVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMF-------TLFGPDFVRELHKR--GFSVFLDLKFHDIPNTCSKAVK   99 (255)
T ss_dssp             CEEEEECCSSHHHHHHHHTTSCGGGCEEEEEHHHH-------HHHHHHHHHHHHHT--TCCEEEEEEECSCHHHHHHHHH
T ss_pred             CeEEEcCCCCHHHHHHHHHHhCCcCcEEEeCHHHH-------HhhCHHHHHHHHhc--CCCEEEEEecccchhHHHHHHH
Confidence            3478999999999999988763  122  444443       46899999999985  555666666666544    467


Q ss_pred             HHHhcCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         82 PMADANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        82 ~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      .+.++|+|++|+|.   -+|...+++.++.
T Consensus       100 ~~~~~gaD~vTVh~---~~G~~~~~~a~~~  126 (255)
T 3ldv_A          100 AAAELGVWMVNVHA---SGGERMMAASREI  126 (255)
T ss_dssp             HHHHTTCSEEEEEG---GGCHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEec---cCCHHHHHHHHHH
Confidence            78889999999996   3466777776543

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=97.66  E-value=0.00068  Score=58.47  Aligned_cols=86  Identities=19%  Similarity=0.253  Sum_probs=60.3

Q ss_pred             EEecccc--ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCC--C---CHHHHHHH
Q psy11600         36 HLDVMDG--TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD--N---VPQVIRQI  108 (277)
Q Consensus        36 h~DimDg--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d--~---g~~~i~~i  108 (277)
                      -+|+.||  ..|.-..+++     ++            ...++.+.++.+.++|+|+++++--...  +   ....++.+
T Consensus        10 ~id~~~g~~~~v~g~~~~~-----~~------------~~~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i   72 (253)
T 1h5y_A           10 CLDIDGGAKVVVKGVNFQG-----IR------------EVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRV   72 (253)
T ss_dssp             EEEECGGGCEECTTCCCHH-----HH------------EEECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             EEEEcCCceEEEEcccccc-----ee------------ecccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHH
Confidence            4899999  8775444322     11            1347888999999999999977621111  1   46778888


Q ss_pred             HhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600        109 KEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus       109 ~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      ++.+..|+.+      |++ ++.+.++|||.|.+|.+
T Consensus        73 ~~~~~ipvi~~g~i~~~~~-~~~~~~~Gad~V~i~~~  108 (253)
T 1h5y_A           73 AEAVSIPVLVGGGVRSLED-ATTLFRAGADKVSVNTA  108 (253)
T ss_dssp             HHHCSSCEEEESSCCSHHH-HHHHHHHTCSEEEESHH
T ss_pred             HHhcCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChH
Confidence            8887666543      444 58888899999999865

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=97.65  E-value=0.00055  Score=58.02  Aligned_cols=148  Identities=9%  Similarity=0.071  Sum_probs=84.1

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      ++.+.++.+.++|++++  |+...+.    ..+.++++++.+..  ..-+..++++.+.++|+|.+.  ++   ....  
T Consensus        27 ~~~~~~~~~~~~G~~~i--~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v~--l~---~~~~--   97 (215)
T 1xi3_A           27 PEVESVREALEGGATAI--QMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQ--LG---PEDM--   97 (215)
T ss_dssp             CHHHHHHHHHHTTCSEE--EECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEEE--EC---TTSC--
T ss_pred             hHHHHHHHHHHCCCCEE--EECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEcChHHHHHHcCCCEEE--EC---CccC--
Confidence            56688999999999999  6553332    24556666654321  111124677888888888874  43   2211  


Q ss_pred             HHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHH
Q psy11600        149 RQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDE  228 (277)
Q Consensus       149 ~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~  228 (277)
                                        +.+.+..+.  .+++.++++  .++     .    .+.....  ..++..+.+++.      
T Consensus        98 ------------------~~~~~~~~~--~~~~~~v~~--~t~-----~----e~~~~~~--~g~d~i~~~~~~------  138 (215)
T 1xi3_A           98 ------------------PIEVAKEIA--PNLIIGASV--YSL-----E----EALEAEK--KGADYLGAGSVF------  138 (215)
T ss_dssp             ------------------CHHHHHHHC--TTSEEEEEE--SSH-----H----HHHHHHH--HTCSEEEEECSS------
T ss_pred             ------------------CHHHHHHhC--CCCEEEEec--CCH-----H----HHHHHHh--cCCCEEEEcCCc------
Confidence                              223333332  455555544  221     1    1222222  245666544442      


Q ss_pred             HHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        229 CAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       229 ~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                           |+.+.+.+.+..++.++++++.. ++.+.++||||++|++++.
T Consensus       139 -----~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~~~nv~~~~  180 (215)
T 1xi3_A          139 -----PTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGINKDNAREVL  180 (215)
T ss_dssp             -----CC----CCCCCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHH
T ss_pred             -----cCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcCHHHHHHHH
Confidence                 33333334555677888887654 5679999999999998875

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=97.56  E-value=0.00053  Score=62.64  Aligned_cols=133  Identities=12%  Similarity=0.038  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCeeeeeeecc----CcH--HhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQ----NPQ--QWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM  126 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~----~p~--~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~  126 (277)
                      +.++++|+. ++.|+.+++++.    ++.  ++++.+.++|++.+++|.+.   .+++++                    
T Consensus        57 ~~i~~i~~~-~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~---p~~~~~--------------------  112 (328)
T 2gjl_A           57 AEIARCREL-TDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND---PGEHIA--------------------  112 (328)
T ss_dssp             HHHHHHHHH-CSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC---CHHHHH--------------------
T ss_pred             HHHHHHHHh-cCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC---cHHHHH--------------------
Confidence            346777775 788999999996    343  67888888888888887642   123333                    


Q ss_pred             HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCC-CCCchhhhhhhhhHHH
Q psy11600        127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPG-FGGQKFMQDMMPKVKW  205 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pg-t~gq~~~~~~l~kI~~  205 (277)
                                             .+++.|.+...  ++.++-+....+-..+|.+++....+| ..|. +....++.+.+
T Consensus       113 -----------------------~l~~~gi~vi~--~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~-~~~~~~~~l~~  166 (328)
T 2gjl_A          113 -----------------------EFRRHGVKVIH--KCTAVRHALKAERLGVDAVSIDGFECAGHPGE-DDIPGLVLLPA  166 (328)
T ss_dssp             -----------------------HHHHTTCEEEE--EESSHHHHHHHHHTTCSEEEEECTTCSBCCCS-SCCCHHHHHHH
T ss_pred             -----------------------HHHHcCCCEEe--eCCCHHHHHHHHHcCCCEEEEECCCCCcCCCC-ccccHHHHHHH
Confidence                                   33333322221  111111111111223566655444443 2132 11223445555


Q ss_pred             HHhhCCCccEEEeCCC-CcCcHHHHHHccCCC
Q psy11600        206 LRENYPTLNIEVDGGV-GPNTIDECAKCLTGF  236 (277)
Q Consensus       206 l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~  236 (277)
                      +++.. ++.+.++||| +.+++..+.+.|++.
T Consensus       167 v~~~~-~iPviaaGGI~~~~~v~~al~~GAdg  197 (328)
T 2gjl_A          167 AANRL-RVPIIASGGFADGRGLVAALALGADA  197 (328)
T ss_dssp             HHTTC-CSCEEEESSCCSHHHHHHHHHHTCSE
T ss_pred             HHHhc-CCCEEEECCCCCHHHHHHHHHcCCCE
Confidence            55432 5779999999 578898888888885

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=97.54  E-value=0.0002  Score=62.12  Aligned_cols=162  Identities=13%  Similarity=0.144  Sum_probs=89.1

Q ss_pred             cccccCCCCCHHHHHHHHhcCCCCeeee-eeeccCcHHh-----HHHHHhcCCCeEEE-eccCCCCCHHHHHHHHhhCCC
Q psy11600         42 GTFVPNLTFGHPVVKCLRNKIPKAFFET-HMMVQNPQQW-----IEPMADANVDQYTF-HVEPVDNVPQVIRQIKEAGMK  114 (277)
Q Consensus        42 g~fvp~~~~g~~~v~~l~~~~~~~~~d~-Hlmv~~p~~~-----i~~l~~ag~d~i~~-H~e~~d~g~~~i~~i~~~~~~  114 (277)
                      -.|.|++++    ++++|+. .++|+-+ ++-..+++.|     ++.+.++|+|++++ |.|-.- .+.           
T Consensus        36 ~~~~~~~~~----l~~v~~~-~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l-~~~-----------   98 (219)
T 2h6r_A           36 IGVAPQFVD----LRMIVEN-VNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRM-LLA-----------   98 (219)
T ss_dssp             EEEECCTTT----HHHHHHH-CCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCC-BHH-----------
T ss_pred             EEEECCHHH----HHHHHHH-cCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccC-CHH-----------
Confidence            368888776    5667765 4788833 3335566666     89999999999966 433111 000           


Q ss_pred             cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCC---
Q psy11600        115 VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFG---  191 (277)
Q Consensus       115 ~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~---  191 (277)
                                                  ...+..+..++.|+..-+.+.+.+..+.    +..++. .+++++|-+.   
T Consensus        99 ----------------------------e~~~~~~~a~~~Gl~~iv~v~~~~e~~~----~~~~~~-~~i~~~~~~~iGt  145 (219)
T 2h6r_A           99 ----------------------------DIEAVINKCKNLGLETIVCTNNINTSKA----VAALSP-DCIAVEPPELIGT  145 (219)
T ss_dssp             ----------------------------HHHHHHHHHHHHTCEEEEEESSSHHHHH----HTTTCC-SEEEECCCC----
T ss_pred             ----------------------------HHHHHHHHHHHCCCeEEEEeCCchHHHH----HHhCCC-CEEEEEecccccc
Confidence                                        1122333334444443334433322211    111221 2466777442   


Q ss_pred             C---chhhhhhhh-hHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCccccc-CHHHHHHHHH
Q psy11600        192 G---QKFMQDMMP-KVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFMQ-DMMPKVKWLR  253 (277)
Q Consensus       192 g---q~~~~~~l~-kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~~-~~~~kI~~l~  253 (277)
                      |   +.+.++.++ .++.++.+..++.+...|||+. +.++.+.+.|++.   ||..+.+ +..+.+++|+
T Consensus       146 G~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~  216 (219)
T 2h6r_A          146 GIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELI  216 (219)
T ss_dssp             ----------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHC
T ss_pred             CCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHHH
Confidence            3   455444233 3344455545788999999985 7777788888885   7777774 6777776664

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=97.52  E-value=0.0012  Score=58.75  Aligned_cols=91  Identities=19%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEE-eccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH----hHHH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHL-DVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ----WIEP   82 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~-DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~----~i~~   82 (277)
                      +=++++|..++++.++.+++. .++  + ++..  ..|.  ..+|++.+++||+.  ++++-.+++..|..+    +++.
T Consensus         6 ~LivALD~~~~~~al~l~~~l-~~~--v~~~~KvG~~l~--~~~G~~~v~~Lk~~--g~~VflDlK~~DIpnTv~~a~~~   78 (259)
T 3tfx_A            6 PVIVALDLDNEEQLNKILSKL-GDP--HDVFVKVGMELF--YNAGIDVIKKLTQQ--GYKIFLDLKMHDIPNTVYNGAKA   78 (259)
T ss_dssp             CEEEECCCSCHHHHHHHHHTT-CCG--GGCEEEECHHHH--HHHCHHHHHHHHHT--TCEEEEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCHHHHHHHHHHh-Ccc--cceEEEeCHHHH--HhcCHHHHHHHHHC--CCcEEEEecccccchHHHHHHHH
Confidence            447899999999999998876 354  4 5555  2233  35799999999985  889999999999775    4567


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      +.+.|+|++|+|.   -+|...+++.++
T Consensus        79 ~~~~gad~vTVh~---~~G~~~~~aa~~  103 (259)
T 3tfx_A           79 LAKLGITFTTVHA---LGGSQMIKSAKD  103 (259)
T ss_dssp             HHTTTCSEEEEEG---GGCHHHHHHHHH
T ss_pred             HHhcCCCEEEEcC---CCCHHHHHHHHH
Confidence            8888999999996   345666666543

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.44  E-value=0.011  Score=51.80  Aligned_cols=163  Identities=15%  Similarity=0.205  Sum_probs=104.9

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .+.|=+-.-|.....+-.+.|.+.|++.+-+..-.    |   -+.+.++++++.+|++.+=+.- |.+ .++++...++
T Consensus        35 ~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t----~---~a~e~I~~l~~~~~~~~iGaGT-Vlt-~~~a~~Ai~A  105 (232)
T 4e38_A           35 KVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRS----D---AAVEAIRLLRQAQPEMLIGAGT-ILN-GEQALAAKEA  105 (232)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS----T---THHHHHHHHHHHCTTCEEEEEC-CCS-HHHHHHHHHH
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC----C---CHHHHHHHHHHhCCCCEEeECC-cCC-HHHHHHHHHc
Confidence            46777777788888888999999999997664332    2   2568999999988887776664 445 6678899999


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKT  166 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t  166 (277)
                      |++++  |.-..+  +                                           ++.+..++.|+..-.|+.   
T Consensus       106 GA~fI--vsP~~~--~-------------------------------------------~vi~~~~~~gi~~ipGv~---  135 (232)
T 4e38_A          106 GATFV--VSPGFN--P-------------------------------------------NTVRACQEIGIDIVPGVN---  135 (232)
T ss_dssp             TCSEE--ECSSCC--H-------------------------------------------HHHHHHHHHTCEEECEEC---
T ss_pred             CCCEE--EeCCCC--H-------------------------------------------HHHHHHHHcCCCEEcCCC---
Confidence            99999  532222  3                                           344444443322211111   


Q ss_pred             CHHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        167 PVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       167 ~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +.+++...++ -+|++   -+-|...   +  .=.+.++.++.-++++.+..-|||+.+++.+..++|+..
T Consensus       136 TptEi~~A~~~Gad~v---K~FPa~~---~--gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~  198 (232)
T 4e38_A          136 NPSTVEAALEMGLTTL---KFFPAEA---S--GGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVL  198 (232)
T ss_dssp             SHHHHHHHHHTTCCEE---EECSTTT---T--THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBC
T ss_pred             CHHHHHHHHHcCCCEE---EECcCcc---c--cCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeE
Confidence            2222322222 23432   2244321   0  003456777777788999999999999999999988654

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=97.39  E-value=0.00093  Score=57.20  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=79.8

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCC-----C--HHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDN-----V--PQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~-----g--~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.+.++.+.++|++++  |+...++     +  ..+++.+++.+..  ..-+..++++.+.++|+|.+.+  +   .  .
T Consensus        33 ~~~~~~~~~~~G~~~i--~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~~~~a~~~gad~v~l--~---~--~  103 (227)
T 2tps_A           33 PVTVVQKALKGGATLY--QFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHI--G---Q--E  103 (227)
T ss_dssp             HHHHHHHHHHHTCSEE--EECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTCSEEEE--C---T--T
T ss_pred             HHHHHHHHHHCCCCEE--EEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEcCHHHHHHHcCCCEEEE--C---C--C
Confidence            4457889999999999  6554433     1  3555666554321  1111235667777778777633  3   1  0


Q ss_pred             HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcH
Q psy11600        147 VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI  226 (277)
Q Consensus       147 ~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv  226 (277)
                      .                  .++   ..+.+..+. ..+.+.|.++     .+    +.....  ..++..+.|.+.    
T Consensus       104 ~------------------~~~---~~~~~~~g~-~~~~~s~~t~-----~e----~~~a~~--~g~d~v~~~~v~----  146 (227)
T 2tps_A          104 D------------------ANA---KEVRAAIGD-MILGVSAHTM-----SE----VKQAEE--DGADYVGLGPIY----  146 (227)
T ss_dssp             S------------------SCH---HHHHHHHTT-SEEEEEECSH-----HH----HHHHHH--HTCSEEEECCSS----
T ss_pred             c------------------cCH---HHHHHhcCC-cEEEEecCCH-----HH----HHHHHh--CCCCEEEECCCc----
Confidence            0                  112   222333342 2334445432     11    222222  245666544442    


Q ss_pred             HHHHHccCCCCCcc-cccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        227 DECAKCLTGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       227 ~~~~~~gpg~ggq~-F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                             |.++.+. +.+..++.++++++..+++.+.++||||++|+.++.
T Consensus       147 -------~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~  190 (227)
T 2tps_A          147 -------PTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVI  190 (227)
T ss_dssp             -------CCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHH
T ss_pred             -------CCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHH
Confidence                   3332222 334446778887776544679999999999998764

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=97.34  E-value=0.0031  Score=57.72  Aligned_cols=130  Identities=18%  Similarity=0.224  Sum_probs=74.7

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCc--HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcC
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNP--QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN  130 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p--~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g  130 (277)
                      +.++++|+. ++.|+-+++++.+|  .+.++.+.++|++.+++|...   .+.+++.+++.                   
T Consensus        67 ~~i~~i~~~-~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~---p~~~~~~l~~~-------------------  123 (326)
T 3bo9_A           67 KAISELRQK-TDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGN---PTKYIRELKEN-------------------  123 (326)
T ss_dssp             HHHHHHHTT-CSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSC---CHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHh-cCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCC---cHHHHHHHHHc-------------------
Confidence            346667764 67899999999766  567888889999999888652   13444444432                   


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCC-CCchhhhhhhhhHHHHHh
Q psy11600        131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGF-GGQKFMQDMMPKVKWLRE  208 (277)
Q Consensus       131 ~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt-~gq~~~~~~l~kI~~l~~  208 (277)
                                              |.+....+   ++.+......+ .+|.+.+....+|. .|+..   .++.+.++++
T Consensus       124 ------------------------g~~v~~~v---~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~---~~~ll~~i~~  173 (326)
T 3bo9_A          124 ------------------------GTKVIPVV---ASDSLARMVERAGADAVIAEGMESGGHIGEVT---TFVLVNKVSR  173 (326)
T ss_dssp             ------------------------TCEEEEEE---SSHHHHHHHHHTTCSCEEEECTTSSEECCSSC---HHHHHHHHHH
T ss_pred             ------------------------CCcEEEEc---CCHHHHHHHHHcCCCEEEEECCCCCccCCCcc---HHHHHHHHHH
Confidence                                    22211111   11111111111 14444433333332 12211   2333444443


Q ss_pred             hCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        209 NYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       209 ~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      .. ++.+.++|||+ ..++..+.+.|++.
T Consensus       174 ~~-~iPviaaGGI~~~~dv~~al~~GA~g  201 (326)
T 3bo9_A          174 SV-NIPVIAAGGIADGRGMAAAFALGAEA  201 (326)
T ss_dssp             HC-SSCEEEESSCCSHHHHHHHHHHTCSE
T ss_pred             Hc-CCCEEEECCCCCHHHHHHHHHhCCCE
Confidence            32 57799999998 88998998999885

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.33  E-value=0.0018  Score=56.31  Aligned_cols=179  Identities=16%  Similarity=0.186  Sum_probs=106.7

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC-CC-----CHHHHHHHH
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV-DN-----VPQVIRQIK  109 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~-d~-----g~~~i~~i~  109 (277)
                      -+|+.||..|.-..|            ...     -...+|.+.++.+.++|+++++++ |.. ++     ....+++++
T Consensus        10 ~id~~~g~~v~~~~~------------~~~-----~~~~d~~~~a~~~~~~Gad~i~v~-d~~~~~~~~~~~~~~i~~i~   71 (252)
T 1ka9_F           10 CLDVHAGRVVKGVNF------------VNL-----RDAGDPVEAARAYDEAGADELVFL-DISATHEERAILLDVVARVA   71 (252)
T ss_dssp             EEEEETTEETTCCCS------------SCC-----SSTTCHHHHHHHHHHHTCSCEEEE-ECCSSTTCHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEeecc------------cCc-----eecCCHHHHHHHHHHcCCCEEEEE-cCCccccCccccHHHHHHHH
Confidence            379999988843332            111     134588899999999999999776 332 21     234578888


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCc-cceeeCC----C--------------
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VGLAIKP----K--------------  165 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~-~g~~i~p----~--------------  165 (277)
                      +....|+-+     ..+.++.+.++|||.+.+-..+-..+..+.+..+..|.. .-+++.+    |              
T Consensus        72 ~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~  151 (252)
T 1ka9_F           72 ERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTG  151 (252)
T ss_dssp             TTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred             HhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccC
Confidence            776666654     466788888999999988654111222344555555421 1233333    1              


Q ss_pred             -CCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600        166 -TPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF  236 (277)
Q Consensus       166 -t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~  236 (277)
                       ++.+......+. ++.++....+.....+..   -++.++++++.. ++-+..-|||+- +.+..+.+.|++.
T Consensus       152 ~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~---~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadg  221 (252)
T 1ka9_F          152 LHAVEWAVKGVELGAGEILLTSMDRDGTKEGY---DLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEA  221 (252)
T ss_dssp             EEHHHHHHHHHHHTCCEEEEEETTTTTTCSCC---CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             CcHHHHHHHHHHcCCCEEEEecccCCCCcCCC---CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHH
Confidence             123333333333 555555544432111111   145556666543 567888999994 8899998888874

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=97.28  E-value=0.00039  Score=62.62  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=53.3

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeee--ccCcHHhHHHHHhcC
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMM--VQNPQQWIEPMADAN   87 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlm--v~~p~~~i~~l~~ag   87 (277)
                      |+++..+..+ .++++.+++.|+|++     ||+|.+++   +++++.+++.    .+++|+|  +.+|.+..+ ..++|
T Consensus        80 Pvi~~~~~~~-~~~~~~~~~aGad~v-----~~~~~~~~---~~~~~~~~~~----~~~i~l~~~v~~~~~~~~-a~~~G  145 (297)
T 2zbt_A           80 PVMAKVRIGH-FVEAMILEAIGVDFI-----DESEVLTP---ADEEHHIDKW----KFKVPFVCGARNLGEALR-RIAEG  145 (297)
T ss_dssp             CEEEEEETTC-HHHHHHHHHTTCSEE-----EEETTSCC---SCSSCCCCGG----GCSSCEEEEESSHHHHHH-HHHTT
T ss_pred             CeEEEeccCC-HHHHHHHHHCCCCEE-----eeeCCCCh---HHHHHHHHHh----CCCceEEeecCCHHHHHH-HHHcC
Confidence            5555555444 788999999999996     67887653   3445555543    3478999  778988765 57899


Q ss_pred             CCeEEEecc
Q psy11600         88 VDQYTFHVE   96 (277)
Q Consensus        88 ~d~i~~H~e   96 (277)
                      +|++++|.+
T Consensus       146 ad~I~v~G~  154 (297)
T 2zbt_A          146 AAMIRTKGE  154 (297)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEccc
Confidence            999999954

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=97.28  E-value=0.0004  Score=60.28  Aligned_cols=176  Identities=13%  Similarity=0.185  Sum_probs=104.8

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhH----HHHHh
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWI----EPMAD   85 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i----~~l~~   85 (277)
                      ++++|.   ++.++.+++. .++  +++.-  ..|.  ..+|++.+++|++. .++++-.+++..|..+.+    +.+.+
T Consensus         5 ivALD~---~~al~l~~~l-~~~--v~~~KvG~~l~--~~~G~~~v~~L~~~-~g~~VflDlK~~DIpnTv~~a~~~~~~   75 (215)
T 3ve9_A            5 ILSLDS---PIPEETLRKL-NGK--VAGIKVGWPLL--LNLGKEKVKELVGL-VDGIKILDLKLADIDNTMILIVDELKD   75 (215)
T ss_dssp             EEEESS---CCCHHHHHHH-HTT--SSEEEEEHHHH--HHHCHHHHHHHHTT-CCSEEEEEEEECSCHHHHHHHHHHHTT
T ss_pred             EEECCH---HHHHHHHHHh-CCc--CcEEEecHHHH--HhhCHHHHHHHHHh-cCCcEEEEecccCchhHHHHHHHHHHH
Confidence            567788   3334443333 122  33333  1233  35899999999984 488999999999977653    66778


Q ss_pred             cCCCeEEEeccCCCCC-HHHHHHHHhhCCCcc---cc--hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccc
Q psy11600         86 ANVDQYTFHVEPVDNV-PQVIRQIKEAGMKVG---QV--LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG  159 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g-~~~i~~i~~~~~~~~---d~--p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g  159 (277)
                      . +|++|+|.-.   | ++.++.. +......   .+  +. +.              -+   ...+..+..++.|. .|
T Consensus        76 ~-ad~vTvh~~~---G~~~~~~~~-~~~~~v~vLts~s~~~-~~--------------~~---~v~~~a~~a~~~G~-~G  131 (215)
T 3ve9_A           76 I-TNSFIAHAFV---GVEGSLASL-SQRVDLFLVLSMSHPG-WN--------------DA---FYPYLREVARRVNP-KG  131 (215)
T ss_dssp             T-CSEEEEEGGG---CTTTTHHHH-HHHSEEEEECCCSSTT-CC--------------GG---GHHHHHHHHHHHCC-SE
T ss_pred             h-hheEEEeCCC---CcHHHHHhH-hcCCCEEEEEecCCcc-hH--------------HH---HHHHHHHHHHHcCC-Cc
Confidence            8 9999999643   3 3445544 1111110   00  10 00              11   23344444444431 01


Q ss_pred             eeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcC--cHHHHHHccCCC-
Q psy11600        160 LAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN--TIDECAKCLTGF-  236 (277)
Q Consensus       160 ~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~--tv~~~~~~gpg~-  236 (277)
                                              + |.++|..        +.++.+++..++ -+.|+|||+..  |..++.++|+++ 
T Consensus       132 ------------------------v-V~sat~~--------~e~~~ir~~~~~-f~~v~pGI~~~g~~~~~a~~~Gad~i  177 (215)
T 3ve9_A          132 ------------------------F-VAPATRP--------SMISRVKGDFPD-KLVISPGVGTQGAKPGIALCHGADYE  177 (215)
T ss_dssp             ------------------------E-ECCTTSH--------HHHHHHHHHCTT-SEEEECCTTSTTCCTTHHHHTTCSEE
T ss_pred             ------------------------e-eeCCCCH--------HHHHHHHHhCCC-cEEEcCCCCcCcCCHHHHHHcCCCEE
Confidence                                    1 2333321        236667777777 57889999998  888899999997 


Q ss_pred             --CCcccc-cCHHHHHHHHHh
Q psy11600        237 --GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 --ggq~F~-~~~~~kI~~l~~  254 (277)
                        |...|. ++..+.++++++
T Consensus       178 VvGr~I~~a~dp~~a~~~i~~  198 (215)
T 3ve9_A          178 IVGRSVYQSADPVRKLEEIVR  198 (215)
T ss_dssp             EECHHHHTSSSHHHHHHHHHH
T ss_pred             EeCHHHcCCCCHHHHHHHHHH
Confidence              667776 467777776664

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=97.11  E-value=0.0064  Score=54.49  Aligned_cols=172  Identities=11%  Similarity=0.074  Sum_probs=110.4

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCC--ChH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVD--NVP  145 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~--~~~  145 (277)
                      +|.+..+.+.++||+.+++--|..  .|++..++++|+.+..|+..     +...+.....+|||.|.+-...-.  .+.
T Consensus        80 dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~  159 (272)
T 3tsm_A           80 DPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAK  159 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCHHHHH
T ss_pred             CHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCHHHHH
Confidence            788899999999999996654542  36899999999998887732     455688889999999988764111  122


Q ss_pred             HHHHHHHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCC-C
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-G  222 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV-~  222 (277)
                      .+.+..+..|+..=+-  .. +.+++...+.. .|+   +.+|+-. ...|-. -++...++.+..| ++-+..-||| +
T Consensus       160 ~l~~~a~~lGl~~lve--vh-~~eEl~~A~~~ga~i---IGinnr~-l~t~~~-dl~~~~~L~~~ip~~~~vIaesGI~t  231 (272)
T 3tsm_A          160 ELEDTAFALGMDALIE--VH-DEAEMERALKLSSRL---LGVNNRN-LRSFEV-NLAVSERLAKMAPSDRLLVGESGIFT  231 (272)
T ss_dssp             HHHHHHHHTTCEEEEE--EC-SHHHHHHHTTSCCSE---EEEECBC-TTTCCB-CTHHHHHHHHHSCTTSEEEEESSCCS
T ss_pred             HHHHHHHHcCCeEEEE--eC-CHHHHHHHHhcCCCE---EEECCCC-CccCCC-ChHHHHHHHHhCCCCCcEEEECCCCC
Confidence            3444555555332111  12 33444433321 333   3445321 111211 2455556666665 5777889999 8


Q ss_pred             cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        223 PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       223 ~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      .+.+..+.++|++.   |+..+. ++..+.+++|..
T Consensus       232 ~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~  267 (272)
T 3tsm_A          232 HEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLT  267 (272)
T ss_dssp             HHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence            88888899998884   676666 478888888765

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=97.07  E-value=0.0025  Score=57.19  Aligned_cols=166  Identities=15%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             HHHHhcCCCCeeeeeeeccCcHHhHH---HHHh-cCCCeEEEeccCC---CC----------CHHHHHHHHhhCCCcccc
Q psy11600         56 KCLRNKIPKAFFETHMMVQNPQQWIE---PMAD-ANVDQYTFHVEPV---DN----------VPQVIRQIKEAGMKVGQV  118 (277)
Q Consensus        56 ~~l~~~~~~~~~d~Hlmv~~p~~~i~---~l~~-ag~d~i~~H~e~~---d~----------g~~~i~~i~~~~~~~~d~  118 (277)
                      +.+|+..|+.++-+.+...+++++.+   .+.+ +|+|.+.+|+-..   ++          -.++++++|+....|+.+
T Consensus        90 ~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~v  169 (311)
T 1ep3_A           90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYV  169 (311)
T ss_dssp             HHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            34565347889999999888877643   3445 8999998887521   11          267888888875544432


Q ss_pred             --------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCC
Q psy11600        119 --------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGF  190 (277)
Q Consensus       119 --------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt  190 (277)
                              +.++++.+.++|+|+|++.--     .            .|..+.+.+.-    +.+..        ...|+
T Consensus       170 k~~~~~~~~~~~a~~l~~~G~d~i~v~~~-----~------------~g~~i~~~~~~----~~~~~--------~~~g~  220 (311)
T 1ep3_A          170 KLSPNVTDIVPIAKAVEAAGADGLTMINT-----L------------MGVRFDLKTRQ----PILAN--------ITGGL  220 (311)
T ss_dssp             EECSCSSCSHHHHHHHHHTTCSEEEECCC-----E------------EECCBCTTTCS----BSSTT--------SCEEE
T ss_pred             EECCChHHHHHHHHHHHHcCCCEEEEeCC-----C------------cccccCcccCC----ccccC--------CCCcc
Confidence                    466788888999999888310     0            00000000000    00000        00122


Q ss_pred             CCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCcccc-cCHHHHHHH
Q psy11600        191 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM-QDMMPKVKW  251 (277)
Q Consensus       191 ~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~  251 (277)
                      +|....+..++.++++++.. ++.+...||| +.+.+.++.++|++.   |+..+. ++..+++++
T Consensus       221 ~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~  285 (311)
T 1ep3_A          221 SGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIID  285 (311)
T ss_dssp             ESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHH
Confidence            23333333345666666544 6789999999 678888888889885   554433 567777664

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=97.04  E-value=0.016  Score=51.68  Aligned_cols=181  Identities=17%  Similarity=0.278  Sum_probs=101.4

Q ss_pred             ceEeeeccccCcc--cHHHHHHHHHHcCCCEEEEec------cccccccC---------CCC--CHHHHHHHHhcCCCCe
Q psy11600          6 CMIGPSILNSDLS--NLHSESQNLLDSGADYLHLDV------MDGTFVPN---------LTF--GHPVVKCLRNKIPKAF   66 (277)
Q Consensus         6 ~~~~~s~~~~d~~--~l~~~~~~l~~~~~~~~h~Di------mDg~fvp~---------~~~--g~~~v~~l~~~~~~~~   66 (277)
                      ..+.|=+.+.|+.  ...+.++.|.+. +|.+-+++      +||+++-.         ++.  ..+.++++|+. +++|
T Consensus        16 ~~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~P   93 (271)
T 1ujp_A           16 AALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKP   93 (271)
T ss_dssp             CEEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSC
T ss_pred             ceEEEEecCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCC
Confidence            3467788888875  344566667777 88877764      44444311         111  12568999987 7888


Q ss_pred             eeeeeeccCc------HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCC
Q psy11600         67 FETHMMVQNP------QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        67 ~d~Hlmv~~p------~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~  140 (277)
                      +-+ |...||      +++++.+.++|+|.+.+ .|...                                       | 
T Consensus        94 ii~-m~y~n~v~~~g~~~f~~~~~~aG~dGviv-~Dl~~---------------------------------------e-  131 (271)
T 1ujp_A           94 LFL-MTYLNPVLAWGPERFFGLFKQAGATGVIL-PDLPP---------------------------------------D-  131 (271)
T ss_dssp             EEE-ECCHHHHHHHCHHHHHHHHHHHTCCEEEC-TTCCG---------------------------------------G-
T ss_pred             EEE-EecCcHHHHhhHHHHHHHHHHcCCCEEEe-cCCCH---------------------------------------H-
Confidence            776 322344      55688888999996633 22211                                       1 


Q ss_pred             CCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEE
Q psy11600        141 VDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEV  217 (277)
Q Consensus       141 ~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~v  217 (277)
                        ......+.+++.|...-.-+.|.++.+.+..+... .+++...++ .|+.|..  +-.+..+.++++++.. ++.+.+
T Consensus       132 --e~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~-~G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~v  207 (271)
T 1ujp_A          132 --EDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV-TGVTGMRERLPEEVKDLVRRIKART-ALPVAV  207 (271)
T ss_dssp             --GCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC-------------CCHHHHHHHHTTC-CSCEEE
T ss_pred             --HHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEec-CcccCCCCCCCccHHHHHHHHHhhc-CCCEEE
Confidence              23344455555443322334455555555555433 344444443 3333322  2234456677777754 678999


Q ss_pred             eCCCC-cCcHHHHHHccCCC
Q psy11600        218 DGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       218 dGgV~-~~tv~~~~~~gpg~  236 (277)
                      -|||+ .+++.++  .+++.
T Consensus       208 GfGI~t~e~a~~~--~~ADg  225 (271)
T 1ujp_A          208 GFGVSGKATAAQA--AVADG  225 (271)
T ss_dssp             ESCCCSHHHHHHH--TTSSE
T ss_pred             EcCCCCHHHHHHh--cCCCE
Confidence            99998 8888886  67774

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=97.02  E-value=0.0062  Score=51.65  Aligned_cols=70  Identities=14%  Similarity=0.114  Sum_probs=43.6

Q ss_pred             CCCeeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCC
Q psy11600         63 PKAFFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVD  132 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d  132 (277)
                      ++.++..-++..++.+   .++.+.+.|++++  |+..++. ..+.++.+++....++-+      -.++++.+.++|||
T Consensus         5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i--~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad   82 (212)
T 2v82_A            5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAV--EIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQ   82 (212)
T ss_dssp             SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEE--EEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE--EEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCC
Confidence            3567777788877665   4667778899999  6665553 234455555433222222      13467888888888


Q ss_pred             eE
Q psy11600        133 QY  134 (277)
Q Consensus       133 ~i  134 (277)
                      .|
T Consensus        83 ~V   84 (212)
T 2v82_A           83 LI   84 (212)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.96  E-value=0.015  Score=50.66  Aligned_cols=163  Identities=14%  Similarity=0.051  Sum_probs=100.8

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc-----------c---h-hhhhHHHHhcCCCeEEeecCC
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ-----------V---L-QDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d-----------~---p-~~~i~~~~~~g~d~it~H~E~  140 (277)
                      +.+..+.+.++|+..+.+      ++++.|+++|+.+..|+-           +   | .+.++.+.++|||.|.+-.-.
T Consensus        38 ~~~~A~a~~~~Ga~~i~~------~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~  111 (232)
T 3igs_A           38 VAAMALAAEQAGAVAVRI------EGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTA  111 (232)
T ss_dssp             HHHHHHHHHHTTCSEEEE------ESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCS
T ss_pred             HHHHHHHHHHCCCeEEEE------CCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccc
Confidence            455678888999999864      468899999999877632           1   2 235788899999999864320


Q ss_pred             C---CChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCC-CCCchhhhhhhhhHHHHHhhCCCccE
Q psy11600        141 V---DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPG-FGGQKFMQDMMPKVKWLRENYPTLNI  215 (277)
Q Consensus       141 ~---~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pg-t~gq~~~~~~l~kI~~l~~~~~~~~i  215 (277)
                      .   ..+.++++.+++.|+.....+  . +.+......+ -+|++. .+ +-| |++.+....-++.++++++.  ++-+
T Consensus       112 ~~~p~~l~~~i~~~~~~g~~v~~~v--~-t~eea~~a~~~Gad~Ig-~~-~~g~t~~~~~~~~~~~~i~~l~~~--~ipv  184 (232)
T 3igs_A          112 RQRPVAVEALLARIHHHHLLTMADC--S-SVDDGLACQRLGADIIG-TT-MSGYTTPDTPEEPDLPLVKALHDA--GCRV  184 (232)
T ss_dssp             SCCSSCHHHHHHHHHHTTCEEEEEC--C-SHHHHHHHHHTTCSEEE-CT-TTTSSSSSCCSSCCHHHHHHHHHT--TCCE
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEEeC--C-CHHHHHHHHhCCCCEEE-Ec-CccCCCCCCCCCCCHHHHHHHHhc--CCcE
Confidence            0   145677888887765544432  2 3444444332 255442 11 112 11111112234556666654  7888


Q ss_pred             EEeCCC-CcCcHHHHHHccCCC---CCcccccCHHHHHHHHH
Q psy11600        216 EVDGGV-GPNTIDECAKCLTGF---GGQKFMQDMMPKVKWLR  253 (277)
Q Consensus       216 ~vdGgV-~~~tv~~~~~~gpg~---ggq~F~~~~~~kI~~l~  253 (277)
                      ...||| +.+.+..+.++|++.   |+..+.+  .+..++++
T Consensus       185 IA~GGI~t~~d~~~~~~~GadgV~VGsal~~p--~~~~~~~~  224 (232)
T 3igs_A          185 IAEGRYNSPALAAEAIRYGAWAVTVGSAITRL--EHICGWYN  224 (232)
T ss_dssp             EEESCCCSHHHHHHHHHTTCSEEEECHHHHCH--HHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEehHhcCH--HHHHHHHH
Confidence            999999 589999999998885   6555543  34444444

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=96.95  E-value=0.0042  Score=55.71  Aligned_cols=129  Identities=14%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             ceEeeeccccCcccHHHHHHHHHH-cCCCEEEEeccccc-------cccCCCCCHHHHHHHHhcCCCCeeeeeee--ccC
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLD-SGADYLHLDVMDGT-------FVPNLTFGHPVVKCLRNKIPKAFFETHMM--VQN   75 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~-~~~~~~h~DimDg~-------fvp~~~~g~~~v~~l~~~~~~~~~d~Hlm--v~~   75 (277)
                      ..+.+++.+.+...+.+..+.+++ .|+|.+.+.+..-.       |..+..+-.++++++|+. .++|+.+.+.  +.+
T Consensus        99 ~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~-~~~pv~vk~~~~~~~  177 (311)
T 1ep3_A           99 LPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAV-SKVPLYVKLSPNVTD  177 (311)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHH-CSSCEEEEECSCSSC
T ss_pred             CcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHh-cCCCEEEEECCChHH
Confidence            347788888888888888888887 89999877664211       111112226788899986 4788877664  346


Q ss_pred             cHHhHHHHHhcCCCeEEE---------eccCC-------CC---C-------HHHHHHHHhhCCCcccc------hhhhh
Q psy11600         76 PQQWIEPMADANVDQYTF---------HVEPV-------DN---V-------PQVIRQIKEAGMKVGQV------LQDWI  123 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~---------H~e~~-------d~---g-------~~~i~~i~~~~~~~~d~------p~~~i  123 (277)
                      +.+.++.+.++|+|++++         |.+..       .+   |       ...++++++....|+-.      +++..
T Consensus       178 ~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~  257 (311)
T 1ep3_A          178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVL  257 (311)
T ss_dssp             SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHH
Confidence            677789999999999987         54321       11   2       26677777766555432      44444


Q ss_pred             HHHHhcCCCeEEe
Q psy11600        124 EPMADANVDQYTF  136 (277)
Q Consensus       124 ~~~~~~g~d~it~  136 (277)
                      +.+ ++|||.+.+
T Consensus       258 ~~l-~~GAd~V~v  269 (311)
T 1ep3_A          258 EMY-MAGASAVAV  269 (311)
T ss_dssp             HHH-HHTCSEEEE
T ss_pred             HHH-HcCCCEEEE
Confidence            433 477887766

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=96.87  E-value=0.016  Score=50.75  Aligned_cols=175  Identities=17%  Similarity=0.283  Sum_probs=107.5

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC----CC---CHHHHHHHH
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV----DN---VPQVIRQIK  109 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~----d~---g~~~i~~i~  109 (277)
                      +|++||.-|.-.. |             -.........+|.+.++.|.+.|++++  |+--.    .+   -..+|+.+.
T Consensus         8 IDl~~G~vVrlv~-G-------------~~~~~~~~~~dP~~~a~~~~~~gad~l--hvvDld~a~~~~~~~~~~i~~i~   71 (243)
T 4gj1_A            8 LDLIDGEVVRLVK-G-------------DYEQKKVYKYNPLKKFKEYEKAGAKEL--HLVDLTGAKDPSKRQFALIEKLA   71 (243)
T ss_dssp             EEEETTEEEEEEC-S-------------SSCEEEECCCCHHHHHHHHHHHTCCEE--EEEEHHHHHCGGGCCHHHHHHHH
T ss_pred             EEEECCeEEEEEc-c-------------CcCCCcEeCCCHHHHHHHHHHCCCCEE--EEEecCcccccchhHHHHHHHHH
Confidence            7999997662211 1             122345567899999999999999999  53211    22   467899998


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcc-ceeeCC-----------------CC
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV-GLAIKP-----------------KT  166 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~-g~~i~p-----------------~t  166 (277)
                      +.+..|+.+     -.+-++.+.++||+.|.+-..+.+++.-+.+..+..|-++ -+++..                 +.
T Consensus        72 ~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~  151 (243)
T 4gj1_A           72 KEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDK  151 (243)
T ss_dssp             HHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CC
T ss_pred             HhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccc
Confidence            888888877     5678888999999999998875555555556667666332 112211                 12


Q ss_pred             CHHhHHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHc
Q psy11600        167 PVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC  232 (277)
Q Consensus       167 ~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~  232 (277)
                      .+..+...+..  ++-+++..++-.-..+-+..+++   +.+.+..+++.+..-||+.  +.+.+.+.
T Consensus       152 ~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~---~~l~~~~~~ipviasGGv~--~~~Dl~~l  214 (243)
T 4gj1_A          152 KLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLY---KLIHEIFPNICIQASGGVA--SLKDLENL  214 (243)
T ss_dssp             BHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHH---HHHHHHCTTSEEEEESCCC--SHHHHHHT
T ss_pred             hHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHH---HHHHHhcCCCCEEEEcCCC--CHHHHHHH
Confidence            22233333333  45566666665433333444444   4445556677888889985  44444443

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.81  E-value=0.013  Score=51.81  Aligned_cols=171  Identities=11%  Similarity=0.057  Sum_probs=104.2

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccC--CCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCC-CChH
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEP--VDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPV-DNVP  145 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~--~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~-~~~~  145 (277)
                      .+|.+..+.+.++|++++++--|.  ..|.+..++++|+.+..|+..     ....+....++|||.|.+-...- ..+.
T Consensus        65 ~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~~~l~  144 (254)
T 1vc4_A           65 VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTG  144 (254)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGGGHH
T ss_pred             CCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchHHHHH
Confidence            467888999999999999553232  235899999999998887543     45467888999999999855300 0333


Q ss_pred             HHHHHHHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC----CccEEEeCC
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGG  220 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~----~~~i~vdGg  220 (277)
                      ++++..+.+|+..-+.+  .+ .+++...+.. .|+   +.+|+-.. ..| ..-++...++.+..+    ++.+..-||
T Consensus       145 ~l~~~a~~lGl~~lvev--~~-~~E~~~a~~~gad~---IGvn~~~l-~~~-~~dl~~~~~L~~~i~~~~~~~~vIAegG  216 (254)
T 1vc4_A          145 AYLEEARRLGLEALVEV--HT-ERELEIALEAGAEV---LGINNRDL-ATL-HINLETAPRLGRLARKRGFGGVLVAESG  216 (254)
T ss_dssp             HHHHHHHHHTCEEEEEE--CS-HHHHHHHHHHTCSE---EEEESBCT-TTC-CBCTTHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             HHHHHHHHCCCeEEEEE--CC-HHHHHHHHHcCCCE---EEEccccC-cCC-CCCHHHHHHHHHhCccccCCCeEEEEcC
Confidence            44444445554432222  22 2344433332 333   34555211 011 111334444444333    456777999


Q ss_pred             CC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600        221 VG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR  253 (277)
Q Consensus       221 V~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~  253 (277)
                      |+ .+.+..+.+ |++.   |+..+. ++..+.+++|.
T Consensus       217 I~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~~~~~~l~  253 (254)
T 1vc4_A          217 YSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV  253 (254)
T ss_dssp             CCSHHHHHTTTT-TCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHc-CCCEEEEeHHHcCCCCHHHHHHHHh
Confidence            98 899988888 8874   666666 46777777664

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.79  E-value=0.03  Score=48.70  Aligned_cols=163  Identities=12%  Similarity=0.096  Sum_probs=100.3

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc-----------c---h-hhhhHHHHhcCCCeEEeecCC
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ-----------V---L-QDWIEPMADANVDQYTFHVEP  140 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d-----------~---p-~~~i~~~~~~g~d~it~H~E~  140 (277)
                      +.+....+.++|+..+.+      +++..|+++|+.+..|+-           +   | .+.++.+.++|||.|.+-.-.
T Consensus        38 ~~~~A~a~~~~Ga~~i~~------~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~  111 (229)
T 3q58_A           38 VAAMAQAAASAGAVAVRI------EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASF  111 (229)
T ss_dssp             HHHHHHHHHHTTCSEEEE------ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCS
T ss_pred             HHHHHHHHHHCCCcEEEE------CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccc
Confidence            355678888999999864      578899999999877641           2   3 235788899999999864310


Q ss_pred             C---CChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCC-CCchhhhhhhhhHHHHHhhCCCccE
Q psy11600        141 V---DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGF-GGQKFMQDMMPKVKWLRENYPTLNI  215 (277)
Q Consensus       141 ~---~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt-~gq~~~~~~l~kI~~l~~~~~~~~i  215 (277)
                      .   ..+.++++.+++.|+.....+  . +.+......+ -+|++. .+ +-|+ ++......-++.++++++.  ++-+
T Consensus       112 ~~~p~~l~~~i~~~~~~g~~v~~~v--~-t~eea~~a~~~Gad~Ig-~~-~~g~t~~~~~~~~~~~li~~l~~~--~ipv  184 (229)
T 3q58_A          112 RSRPVDIDSLLTRIRLHGLLAMADC--S-TVNEGISCHQKGIEFIG-TT-LSGYTGPITPVEPDLAMVTQLSHA--GCRV  184 (229)
T ss_dssp             SCCSSCHHHHHHHHHHTTCEEEEEC--S-SHHHHHHHHHTTCSEEE-CT-TTTSSSSCCCSSCCHHHHHHHHTT--TCCE
T ss_pred             cCChHHHHHHHHHHHHCCCEEEEec--C-CHHHHHHHHhCCCCEEE-ec-CccCCCCCcCCCCCHHHHHHHHHc--CCCE
Confidence            0   156678888887765544432  2 3444443332 245441 11 1222 1111112234556666654  7889


Q ss_pred             EEeCCC-CcCcHHHHHHccCCC---CCcccccCHHHHHHHHH
Q psy11600        216 EVDGGV-GPNTIDECAKCLTGF---GGQKFMQDMMPKVKWLR  253 (277)
Q Consensus       216 ~vdGgV-~~~tv~~~~~~gpg~---ggq~F~~~~~~kI~~l~  253 (277)
                      ...||| +.+.+..+.++|++.   |+..+.+  ....+++.
T Consensus       185 IA~GGI~t~~d~~~~~~~GadgV~VGsai~~p--~~~~~~f~  224 (229)
T 3q58_A          185 IAEGRYNTPALAANAIEHGAWAVTVGSAITRI--EHICQWFS  224 (229)
T ss_dssp             EEESSCCSHHHHHHHHHTTCSEEEECHHHHCH--HHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEchHhcCh--HHHHHHHH
Confidence            999999 589999999998885   6555543  33344444

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=96.75  E-value=0.021  Score=50.58  Aligned_cols=170  Identities=14%  Similarity=0.213  Sum_probs=111.4

Q ss_pred             CCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------C---HHHHHHHHhhCC-Ccc-
Q psy11600         64 KAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------V---PQVIRQIKEAGM-KVG-  116 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------g---~~~i~~i~~~~~-~~~-  116 (277)
                      +.-+-.+++..+|..     .++.+.++|+|.+-+=+   |+ .||             |   .++++.+++... .|+ 
T Consensus        13 ~~ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Piv   92 (252)
T 3tha_A           13 ENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALV   92 (252)
T ss_dssp             SSEEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEE
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEE
Confidence            456889999999854     26667789999985542   33 244             1   344444544432 233 


Q ss_pred             cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhc-CceEEEE
Q psy11600        117 QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESA-DLVLIMT  185 (277)
Q Consensus       117 d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~-d~vl~ma  185 (277)
                      .|          .++|++..+++|+|.+.+.==|-+......+..++.|...=.-+.|.|+.+.+....+.. +++-.++
T Consensus        93 lm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs  172 (252)
T 3tha_A           93 FMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLA  172 (252)
T ss_dssp             EECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEEC
T ss_pred             EEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEe
Confidence            22          688999999999998876421111345677788888877666678888888888887776 5655544


Q ss_pred             ecCCCCCch--hhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC
Q psy11600        186 VEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF  236 (277)
Q Consensus       186 v~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~  236 (277)
                       ..|+.|..  +-+.+.+.++++++.. +.-+.+-+|| +.+++..+.+ +++.
T Consensus       173 -~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~a~~~~~-~ADG  223 (252)
T 3tha_A          173 -SIGITGTKSVEEAILQDKVKEIRSFT-NLPIFVGFGIQNNQDVKRMRK-VADG  223 (252)
T ss_dssp             -CSCSSSCSHHHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHTT-TSSE
T ss_pred             -cCCCCCcccCCCHHHHHHHHHHHHhc-CCcEEEEcCcCCHHHHHHHHh-cCCE
Confidence             34544443  3345566677777763 5788899999 6666666554 3553

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=96.67  E-value=0.013  Score=53.42  Aligned_cols=43  Identities=12%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcH--HhHHHHHhcCCCeEEEecc
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQ--QWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~--~~i~~l~~ag~d~i~~H~e   96 (277)
                      +.++.+|+. ++.|+-+.+++.+|.  +.++.+.++|+|.+.+|..
T Consensus        53 ~~i~~i~~~-~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g   97 (332)
T 2z6i_A           53 ANIDKIKSL-TDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAG   97 (332)
T ss_dssp             HHHHHHHHH-CCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCC
Confidence            446677765 778999999996654  5688888999999988864

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=96.63  E-value=0.058  Score=49.55  Aligned_cols=173  Identities=13%  Similarity=0.092  Sum_probs=99.0

Q ss_pred             cccHHHHHHHHHHcCCCEEEEecc--cccc------ccCCCCCHHHHHHHHhcCCCCeeeeee-eccCcHHhHHHHHhcC
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVM--DGTF------VPNLTFGHPVVKCLRNKIPKAFFETHM-MVQNPQQWIEPMADAN   87 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~Dim--Dg~f------vp~~~~g~~~v~~l~~~~~~~~~d~Hl-mv~~p~~~i~~l~~ag   87 (277)
                      ....-+-++.|.+.|+|+  +.+-  ||-+      .|...=..+.++.+++..++.++.+-. -.....+.++...++|
T Consensus        29 ~e~k~~i~~~L~~~Gvd~--IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aG  106 (345)
T 1nvm_A           29 LDDVRAIARALDKAKVDS--IEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG  106 (345)
T ss_dssp             HHHHHHHHHHHHHHTCSE--EECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCE--EEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCC
Confidence            334445566788888888  5542  2222      122222346788888877777776532 1222367899999999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee--CCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI--KPK  165 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i--~p~  165 (277)
                      ++.+++..-..+.                                      |   .....++..++.|+.....+  -+.
T Consensus       107 vd~v~I~~~~s~~--------------------------------------~---~~~~~i~~ak~~G~~v~~~~~~a~~  145 (345)
T 1nvm_A          107 ARVVRVATHCTEA--------------------------------------D---VSKQHIEYARNLGMDTVGFLMMSHM  145 (345)
T ss_dssp             CCEEEEEEETTCG--------------------------------------G---GGHHHHHHHHHHTCEEEEEEESTTS
T ss_pred             cCEEEEEEeccHH--------------------------------------H---HHHHHHHHHHHCCCEEEEEEEeCCC
Confidence            9998665322220                                      1   22334444555555444444  444


Q ss_pred             CCHHhHHHHHhh-----cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEE----eCCCCcCcHHHHHHccCC
Q psy11600        166 TPVDVIAEYIES-----ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEV----DGGVGPNTIDECAKCLTG  235 (277)
Q Consensus       166 t~~~~i~~~i~~-----~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~v----dGgV~~~tv~~~~~~gpg  235 (277)
                      ++.+.+.+.++.     ++.   ++ -++|.|...-.++.+.++.+++..+ ++.+.+    |-|.-+.|.....++|++
T Consensus       146 ~~~e~~~~ia~~~~~~Ga~~---i~-l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~  221 (345)
T 1nvm_A          146 IPAEKLAEQGKLMESYGATC---IY-MADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCD  221 (345)
T ss_dssp             SCHHHHHHHHHHHHHHTCSE---EE-EECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHCCCCE---EE-ECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCC
Confidence            555544444332     232   22 3566665555566677888888775 677776    556666777777777766


Q ss_pred             C
Q psy11600        236 F  236 (277)
Q Consensus       236 ~  236 (277)
                      .
T Consensus       222 ~  222 (345)
T 1nvm_A          222 R  222 (345)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=96.47  E-value=0.0085  Score=52.15  Aligned_cols=73  Identities=10%  Similarity=0.022  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e   96 (277)
                      ++.+..+.+++.|++++|+-=.|+.+.. -....+.++++++. .++|+-+-=-+.++++ ++.+.++|+|.+  |+-
T Consensus        36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~-~~~~~~~i~~i~~~-~~ipvi~~Ggi~~~~~-~~~~l~~Gad~V--~ig  108 (247)
T 3tdn_A           36 LLRDWVVEVEKRGAGEILLTSIDRDGTK-SGYDTEMIRFVRPL-TTLPIIASGGAGKMEH-FLEAFLRGADKV--SIN  108 (247)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTTCS-SCCCHHHHHHHGGG-CCSCEEEESCCCSHHH-HHHHHHTTCSEE--CCS
T ss_pred             CHHHHHHHHHHcCCCEEEEEecCcccCC-CcccHHHHHHHHHh-CCCCEEEeCCCCCHHH-HHHHHHcCCCee--ehh
Confidence            5667888899999999997444433321 13456899999986 6888887766777765 666778899999  544

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.46  E-value=0.053  Score=50.34  Aligned_cols=103  Identities=12%  Similarity=0.078  Sum_probs=69.7

Q ss_pred             HHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC----C
Q psy11600         26 NLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN----V  101 (277)
Q Consensus        26 ~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~----g  101 (277)
                      ..++.|+..+|-     .+.++  --.+.++++|+. +++++-+.+.+.. .+.++.+.++|+|.++  ++...+    -
T Consensus        65 vA~~GGlgii~~-----~~s~e--~~~~~I~~vk~~-~~~pvga~ig~~~-~e~a~~l~eaGad~I~--ld~a~G~~~~~  133 (361)
T 3khj_A           65 MARLGGIGIIHK-----NMDME--SQVNEVLKVKNS-GGLRVGAAIGVNE-IERAKLLVEAGVDVIV--LDSAHGHSLNI  133 (361)
T ss_dssp             HHHTTCEEEECS-----SSCHH--HHHHHHHHHHHT-TCCCCEEEECTTC-HHHHHHHHHTTCSEEE--ECCSCCSBHHH
T ss_pred             HHHcCCCeEEec-----CCCHH--HHHHHHHHHHhc-cCceEEEEeCCCH-HHHHHHHHHcCcCeEE--EeCCCCCcHHH
Confidence            455678888872     22221  112467777764 8899999998866 7889999999999994  444333    2


Q ss_pred             HHHHHHHHhhCCCccc---c-hhhhhHHHHhcCCCeEEeecC
Q psy11600        102 PQVIRQIKEAGMKVGQ---V-LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus       102 ~~~i~~i~~~~~~~~d---~-p~~~i~~~~~~g~d~it~H~E  139 (277)
                      .+.++++|+....++-   + -.+.+..+.++|||.|.+..+
T Consensus       134 ~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~  175 (361)
T 3khj_A          134 IRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIG  175 (361)
T ss_dssp             HHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecC
Confidence            3567777776543332   2 355678888999999988655

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=96.43  E-value=0.055  Score=50.01  Aligned_cols=108  Identities=17%  Similarity=0.214  Sum_probs=70.4

Q ss_pred             hhhhHHHHhcCCCeEEeecCCCCCh-HHHHHHHHHhCCccceeeCCCCCHHhHHHHH-hhcCceEEEEecCCCCCc--hh
Q psy11600        120 QDWIEPMADANVDQYTFHVEPVDNV-PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI-ESADLVLIMTVEPGFGGQ--KF  195 (277)
Q Consensus       120 ~~~i~~~~~~g~d~it~H~E~~~~~-~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i-~~~d~vl~mav~Pgt~gq--~~  195 (277)
                      .++++.+.++|++.|++|.+   .+ ...++.+++.|++.+..+  . +.+...... ..+|.+.+  ..|+++|+  .+
T Consensus       112 ~~~~~~~~~~g~~~V~~~~g---~~~~~~i~~~~~~g~~v~~~v--~-t~~~a~~a~~~GaD~i~v--~g~~~GGh~g~~  183 (369)
T 3bw2_A          112 DAKLAVLLDDPVPVVSFHFG---VPDREVIARLRRAGTLTLVTA--T-TPEEARAVEAAGADAVIA--QGVEAGGHQGTH  183 (369)
T ss_dssp             HHHHHHHHHSCCSEEEEESS---CCCHHHHHHHHHTTCEEEEEE--S-SHHHHHHHHHTTCSEEEE--ECTTCSEECCCS
T ss_pred             HHHHHHHHhcCCCEEEEeCC---CCcHHHHHHHHHCCCeEEEEC--C-CHHHHHHHHHcCCCEEEE--eCCCcCCcCCCc
Confidence            56788889999999999987   53 467788888776655544  3 344333332 23676654  24543322  11


Q ss_pred             hh---------hhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC
Q psy11600        196 MQ---------DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF  236 (277)
Q Consensus       196 ~~---------~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~  236 (277)
                      .+         ..++.+.++++.. ++.+.++||| +..++..+.+.|+++
T Consensus       184 ~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~  233 (369)
T 3bw2_A          184 RDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADA  233 (369)
T ss_dssp             SCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             ccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCE
Confidence            11         1244555555433 6779999999 899999999999885

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=96.40  E-value=0.17  Score=45.74  Aligned_cols=210  Identities=11%  Similarity=0.058  Sum_probs=113.3

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEecc-----ccccccC--CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVM-----DGTFVPN--LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~Dim-----Dg~fvp~--~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      .|+.+. +..+..++.|++.  +-+.     |-.|-..  ..-.++.|+++|+. .++|+.+-..+.. .+.++.+.++|
T Consensus        26 ~d~~~~-e~A~~ye~~GA~~--lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~-v~iPvl~k~~i~~-ide~qil~aaG  100 (297)
T 4adt_A           26 MDVKNV-EQAKIAEKAGAIG--VMILENIPSELRNTDGVARSVDPLKIEEIRKC-ISINVLAKVRIGH-FVEAQILEELK  100 (297)
T ss_dssp             EEESSH-HHHHHHHHHTCSE--EEECCCCC-----CCCCCCCCCHHHHHHHHTT-CCSEEEEEEETTC-HHHHHHHHHTT
T ss_pred             cCCCcH-HHHHHHHHcCCCE--EEEecCCCCcchhcCCcccCCCHHHHHHHHHh-cCCCEEEeccCCc-HHHHHHHHHcC
Confidence            355555 4568889999999  7777     4344322  11258999999986 7899987666655 56677888999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhC-CCcc--cc-hhhhhHHHHhcCCCeEEeecCCCC-ChHHHHHHHHHhCCccceee
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAG-MKVG--QV-LQDWIEPMADANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAI  162 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~-~~~~--d~-p~~~i~~~~~~g~d~it~H~E~~~-~~~~~~~~I~~~g~~~g~~i  162 (277)
                      +|.+ -..+... -+++++.++++. ..++  ++ -..-.....++|++.|..|-.+.+ +..+..++.+...       
T Consensus       101 AD~I-d~s~~~~-~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~-------  171 (297)
T 4adt_A          101 VDML-DESEVLT-MADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVN-------  171 (297)
T ss_dssp             CSEE-EEETTSC-CSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHH-------
T ss_pred             CCEE-EcCCCCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhh-------
Confidence            9998 2222111 122344444421 1222  22 111233445678888888754111 1123333333210       


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchh---hhhhhhhHHHHHhhCC-CccEEEeCCC-CcCcHHHHHHccCCC-
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKF---MQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKCLTGF-  236 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~---~~~~l~kI~~l~~~~~-~~~i~vdGgV-~~~tv~~~~~~gpg~-  236 (277)
                            .++. .+...        ++.. ...|   ...-++.++++++..+ .+.+...||| +..++..+.++|++. 
T Consensus       172 ------~eir-~l~~~--------~~d~-L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgV  235 (297)
T 4adt_A          172 ------NEIK-YLCSL--------DESE-VYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGV  235 (297)
T ss_dssp             ------HHHH-HHHHS--------CTTT-HHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCE
T ss_pred             ------hhhh-hhccc--------cccc-cccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEE
Confidence                  0000 00000        0000 0000   0112344555555432 2334579999 999999999999985 


Q ss_pred             --CCcccc-cCHHHHHHHHHh
Q psy11600        237 --GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 --ggq~F~-~~~~~kI~~l~~  254 (277)
                        |+..|. ++..+.++++++
T Consensus       236 lVGsai~~a~dp~~~~~~l~~  256 (297)
T 4adt_A          236 FVGSGIFESENPQKMASSIVM  256 (297)
T ss_dssp             EESHHHHTSSCHHHHHHHHHH
T ss_pred             EEhHHHHcCCCHHHHHHHHHH
Confidence              766665 466677777764

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=96.37  E-value=0.03  Score=50.39  Aligned_cols=171  Identities=13%  Similarity=0.057  Sum_probs=102.0

Q ss_pred             HHHHHh--cCCCCeeeeeeeccCcHHh---HHHHHhcCCC---eEEEeccCC--CC----------CHHHHHHHHhhCCC
Q psy11600         55 VKCLRN--KIPKAFFETHMMVQNPQQW---IEPMADANVD---QYTFHVEPV--DN----------VPQVIRQIKEAGMK  114 (277)
Q Consensus        55 v~~l~~--~~~~~~~d~Hlmv~~p~~~---i~~l~~ag~d---~i~~H~e~~--d~----------g~~~i~~i~~~~~~  114 (277)
                      ++.+++  .+++.|+-+-+.-.+++++   ++.+.++|+|   .+.+|+-.-  .+          -.++++++|+....
T Consensus        82 ~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~  161 (314)
T 2e6f_A           82 LKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGL  161 (314)
T ss_dssp             HHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCC
Confidence            455554  3367899998887777776   4456677899   998886421  11          24588899887655


Q ss_pred             cccc----------hhhhhHHHHhcC-CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEE
Q psy11600        115 VGQV----------LQDWIEPMADAN-VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLI  183 (277)
Q Consensus       115 ~~d~----------p~~~i~~~~~~g-~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~  183 (277)
                      |+-+          ..++++.+.++| +|.|++|--    +.            .+..+.+.+.-    +.+.....   
T Consensus       162 Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~----~~------------~~~~i~~~~~~----~~~~~~~~---  218 (314)
T 2e6f_A          162 PFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNS----VG------------NGLVIDAESES----VVIKPKQG---  218 (314)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCC----EE------------EEECEETTTTE----ESCCGGGG---
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCC----CC------------ccccccCCCCC----cccccCcC---
Confidence            5533          223467778999 999998742    10            00111100000    00000000   


Q ss_pred             EEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC---CCccc--ccCHHHHHHH
Q psy11600        184 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF---GGQKF--MQDMMPKVKW  251 (277)
Q Consensus       184 mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F--~~~~~~kI~~  251 (277)
                         ..|.+|....+..++.++++++..+++.+...|||+ .+.+.++..+|++.   |...+  .|...+++++
T Consensus       219 ---~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~  289 (314)
T 2e6f_A          219 ---FGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLED  289 (314)
T ss_dssp             ---EEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHH
T ss_pred             ---CCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHH
Confidence               012233333344566777777766789999999996 67788888889886   44444  3567777764

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=96.26  E-value=0.041  Score=47.66  Aligned_cols=185  Identities=12%  Similarity=0.094  Sum_probs=101.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCC-eeeeeeeccCcHHhHHHHHhc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKA-FFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~-~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      +=++++|..   +.++.+++. .++  +++..  ..|.  ..+|++.++.|++. .++ ++-.+++..|..+.+....++
T Consensus         5 ~livALD~~---~al~l~~~l-~~~--v~~~KvG~~l~--~~~G~~~v~~L~~~-~~~~~VflDlK~~DI~nTv~~~~~~   75 (222)
T 4dbe_A            5 RVILAMDKP---LSYQVLKEM-ENE--LYGIKVGLPLV--LDLGVDKTRELLIG-LDVEEIIVDFKLADIGYIMKSIVER   75 (222)
T ss_dssp             CEEEEESSC---CCHHHHHHH-GGG--CSEEEEEHHHH--HHHCHHHHHHHHHT-CCCSEEEEEEEECSCHHHHHHHHTT
T ss_pred             CeEEECCHH---HHHHHHHHh-CCc--CcEEEECHHHH--HhhCHHHHHHHHHh-cCCCeEEEEeeecchHHHHHHHHHH
Confidence            346778877   444444443 232  44444  2333  35899999999984 388 899999999999887766544


Q ss_pred             CC--CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcC--CCeEEeecCCCC---ChHHHHHHHHHhCCccc
Q psy11600         87 NV--DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN--VDQYTFHVEPVD---NVPQVIRQIKEAGMKVG  159 (277)
Q Consensus        87 g~--d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g--~d~it~H~E~~~---~~~~~~~~I~~~g~~~g  159 (277)
                      -+  |++|+|.-..  ....++..++.              ..+.|  +-.+|---+++-   ...+..+..++.|..  
T Consensus        76 ~~~~d~vTVh~~~G--~~~~~~~a~~~--------------~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~~g~~--  137 (222)
T 4dbe_A           76 LSFANSFIAHSFIG--VKGSLDELKRY--------------LDANSKNLYLVAVMSHEGWSTLFADYIKNVIREISPK--  137 (222)
T ss_dssp             CTTCSEEEEESTTC--TTTTHHHHHHH--------------HHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHHHCCS--
T ss_pred             HHhCCEEEEEcCcC--cHHHHHHHHHH--------------HHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHHhCCC--
Confidence            33  8999996432  03334433221              11111  101111000000   012333333443311  


Q ss_pred             eeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcC--cHHHHHHccCCC-
Q psy11600        160 LAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN--TIDECAKCLTGF-  236 (277)
Q Consensus       160 ~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~--tv~~~~~~gpg~-  236 (277)
                                             ++ |.++|..        +.++.+++..++ -+.|-+||...  |..+..++|+++ 
T Consensus       138 -----------------------Gv-V~sat~p--------~e~~~ir~~~~~-~~~vtPGI~~~g~tp~~a~~~Gad~i  184 (222)
T 4dbe_A          138 -----------------------GI-VVGGTKL--------DHITQYRRDFEK-MTIVSPGMGSQGGSYGDAVCAGADYE  184 (222)
T ss_dssp             -----------------------EE-EECTTCH--------HHHHHHHHHCTT-CEEEECCBSTTSBCTTHHHHHTCSEE
T ss_pred             -----------------------EE-EECCCCH--------HHHHHHHHhCCC-CEEEcCCcccCccCHHHHHHcCCCEE
Confidence                                   11 2233321        236666776777 56678999887  777888899997 


Q ss_pred             --CCcccc-cCHHHHHHHHHh
Q psy11600        237 --GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       237 --ggq~F~-~~~~~kI~~l~~  254 (277)
                        |...+. ++..+..+++++
T Consensus       185 VVGR~I~~A~dP~~aa~~i~~  205 (222)
T 4dbe_A          185 IIGRSIYNAGNPLTALRTINK  205 (222)
T ss_dssp             EECHHHHTSSSHHHHHHHHHH
T ss_pred             EECHHhcCCCCHHHHHHHHHH
Confidence              666665 456655555543

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=96.23  E-value=0.25  Score=43.87  Aligned_cols=169  Identities=15%  Similarity=0.206  Sum_probs=96.0

Q ss_pred             HHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEecc---C-CCC-------------------CHHHHH
Q psy11600         55 VKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHVE---P-VDN-------------------VPQVIR  106 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~e---~-~d~-------------------g~~~i~  106 (277)
                      .+++|+. -+.-+-.|++..+|..     .++.+.++ +|.|-+-.-   . .||                   ....++
T Consensus         7 f~~~~~~-~~~~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~   84 (271)
T 1ujp_A            7 FAKARSE-GRAALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVR   84 (271)
T ss_dssp             HHHHHHT-TBCEEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHc-CCceEEEEecCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3455543 3456888999998864     36667777 998855432   1 122                   135577


Q ss_pred             HHHhhCCCcccc-----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHH---hHH
Q psy11600        107 QIKEAGMKVGQV-----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVD---VIA  172 (277)
Q Consensus       107 ~i~~~~~~~~d~-----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~---~i~  172 (277)
                      ++|+....|+-.           .+++++.++++|+|.+.+-                           ..+.+   .+.
T Consensus        85 ~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~---------------------------Dl~~ee~~~~~  137 (271)
T 1ujp_A           85 EVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILP---------------------------DLPPDEDPGLV  137 (271)
T ss_dssp             HHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECT---------------------------TCCGGGCHHHH
T ss_pred             HHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEec---------------------------CCCHHHHHHHH
Confidence            787775444311           2566677777777765552                           22222   233


Q ss_pred             HHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCC--cccccCHHHHHH
Q psy11600        173 EYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGG--QKFMQDMMPKVK  250 (277)
Q Consensus       173 ~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~gg--q~F~~~~~~kI~  250 (277)
                      +.++..++-++.-+.|.++        .++++.+......+.+.+  +.            .|..|  +.+.++..+.++
T Consensus       138 ~~~~~~gl~~i~liap~s~--------~eri~~ia~~~~gfiy~v--s~------------~G~TG~~~~~~~~~~~~v~  195 (271)
T 1ujp_A          138 RLAQEIGLETVFLLAPTST--------DARIATVVRHATGFVYAV--SV------------TGVTGMRERLPEEVKDLVR  195 (271)
T ss_dssp             HHHHHHTCEEECEECTTCC--------HHHHHHHHTTCCSCEEEE--CC------------------------CCHHHHH
T ss_pred             HHHHHcCCceEEEeCCCCC--------HHHHHHHHHhCCCCEEEE--ec------------CcccCCCCCCCccHHHHHH
Confidence            4455555544444567654        346777766666665543  11            22211  233445567788


Q ss_pred             HHHhhCCCCeEEEeCCCC-ccCHHHh
Q psy11600        251 WLRENYPTLNIEVDGGVG-PNTIDEC  275 (277)
Q Consensus       251 ~l~~~~~~~~I~VDGGI~-~~~~~~~  275 (277)
                      ++|+.. +..+.|=|||+ +++++++
T Consensus       196 ~vr~~~-~~Pv~vGfGI~t~e~a~~~  220 (271)
T 1ujp_A          196 RIKART-ALPVAVGFGVSGKATAAQA  220 (271)
T ss_dssp             HHHTTC-CSCEEEESCCCSHHHHHHH
T ss_pred             HHHhhc-CCCEEEEcCCCCHHHHHHh
Confidence            888764 56799999998 8888764

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=96.18  E-value=0.019  Score=49.36  Aligned_cols=60  Identities=8%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             HHhHHHHHhcCCCeEEEeccC-CCCCHHHHHHHHhhCCC-cc-----cc---hhhhhHHHHhcCCCeEEeecC
Q psy11600         77 QQWIEPMADANVDQYTFHVEP-VDNVPQVIRQIKEAGMK-VG-----QV---LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~-~d~g~~~i~~i~~~~~~-~~-----d~---p~~~i~~~~~~g~d~it~H~E  139 (277)
                      .+.++++...  .++=++.+. . +|+..++++|+.... +.     |+   +..|++.+.++|||.+|+|.+
T Consensus        25 ~~i~~~~~~~--~~~Kvg~~l~~-~G~~~v~~l~~~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~   94 (213)
T 1vqt_A           25 IRFIDENGSF--EVVKVGHNLAI-HGKKIFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSC   94 (213)
T ss_dssp             HHHHHHHCCC--SEEEECHHHHT-TCTHHHHHHHTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGG
T ss_pred             HHHHHHhCCC--CEEEECHHHHh-hCHHHHHHHHHCCCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEecc
Confidence            3345554332  556666654 4 788999999987432 33     44   577999999999999999998

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=96.05  E-value=0.066  Score=45.77  Aligned_cols=167  Identities=13%  Similarity=0.125  Sum_probs=96.0

Q ss_pred             HhHHHHHhcCCCeEEEeccCC-CC--CHHHHHHHHhhCCC---cc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPV-DN--VPQVIRQIKEAGMK---VG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~-d~--g~~~i~~i~~~~~~---~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.++...++|+|++-|=+... .-  .+...++|.+.-..   .+    +. ++...+...+++.|.|=+|=+   ....
T Consensus        13 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~---e~~~   89 (205)
T 1nsj_A           13 EDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGE---EPIE   89 (205)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECSC---CCHH
T ss_pred             HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCC---CCHH
Confidence            357778899999998775321 11  56666777554221   11    11 566667778889999999974   3334


Q ss_pred             HHHHHHH-hCCccceeeCCCCCHHhHHHHHhhcCceEEEEecC--CCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc
Q psy11600        147 VIRQIKE-AGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEP--GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP  223 (277)
Q Consensus       147 ~~~~I~~-~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~P--gt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~  223 (277)
                      ..+.++. ....+.+.+.....++....|-  +|.+++=+-.|  |..|+.|.-+.+..+.     .....+.+.||++.
T Consensus        90 ~~~~l~~~~~vika~~v~~~~~l~~~~~~~--~d~~LlD~~~~~~GGtG~~fdw~~l~~~~-----~~~~p~~LAGGL~p  162 (205)
T 1nsj_A           90 LCRKIAERILVIKAVGVSNERDMERALNYR--EFPILLDTKTPEYGGSGKTFDWSLILPYR-----DRFRYLVLSGGLNP  162 (205)
T ss_dssp             HHHHHHTTSEEEEEEEESSHHHHHHHGGGT--TSCEEEEESCSSSSSCCSCCCGGGTGGGG-----GGSSCEEEESSCCT
T ss_pred             HHHHHhcCCCEEEEEEcCCHHHHHHHHHcC--CCEEEECCCCCCCCCCCCccCHHHHHhhh-----cCCCcEEEECCCCH
Confidence            4444431 1222344444332332222221  78888776554  5667788766665421     12346889999999


Q ss_pred             CcHHHHHH-ccCCC---CCcccc-c--CHHHHHHHHHh
Q psy11600        224 NTIDECAK-CLTGF---GGQKFM-Q--DMMPKVKWLRE  254 (277)
Q Consensus       224 ~tv~~~~~-~gpg~---ggq~F~-~--~~~~kI~~l~~  254 (277)
                      +|+.+..+ .+|..   +|..=. +  --.+||+++-+
T Consensus       163 eNV~~ai~~~~p~gVDvsSGvE~~pG~KD~~ki~~fi~  200 (205)
T 1nsj_A          163 ENVRSAIDVVRPFAVDVSSGVEAFPGKKDHDSIKMFIK  200 (205)
T ss_dssp             TTHHHHHHHHCCSEEEESGGGEEETTEECHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCceecCCCCcCHHHHHHHHH
Confidence            99977644 46642   332211 1  23567766543

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=95.77  E-value=0.17  Score=43.21  Aligned_cols=165  Identities=15%  Similarity=0.124  Sum_probs=95.2

Q ss_pred             HhHHHHHhcCCCeEEEeccCC-CC--CHHHHHHHHhhCCC---cc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPV-DN--VPQVIRQIKEAGMK---VG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~-d~--g~~~i~~i~~~~~~---~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.++...++|+|++-|=+... .-  .+...++|.+.-..   .+    +. ++...+....++.|.|=+|=+   ....
T Consensus        12 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~---e~~~   88 (203)
T 1v5x_A           12 EDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGE---EPPE   88 (203)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSC---CCHH
T ss_pred             HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCC---CCHH
Confidence            346778899999998775321 11  56666776554221   11    11 566677778899999999964   3333


Q ss_pred             HHHHHHH-hCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600        147 VIRQIKE-AGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT  225 (277)
Q Consensus       147 ~~~~I~~-~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t  225 (277)
                      ..+.++. ....+.+.+.....+ ....|-  +|.+++=+-. |..|+.|.-+.+..+  +.   ....+.+.||++.+|
T Consensus        89 ~~~~l~~~~~vika~~v~~~~~l-~~~~~~--~d~~LlD~~~-gGtG~~fdW~~l~~~--~~---~~~p~~LAGGL~peN  159 (203)
T 1v5x_A           89 WAEAVGRFYPVIKAFPLEGPARP-EWADYP--AQALLLDGKR-PGSGEAYPRAWAKPL--LA---TGRRVILAGGIAPEN  159 (203)
T ss_dssp             HHHHHTTTSCEEEEEECSSSCCG-GGGGSS--CSEEEEECSS-TTSCCCCCGGGGHHH--HH---TTSCEEECSSCCSTT
T ss_pred             HHHHhccCCCEEEEEEcCChHhh-hhhhcC--CCEEEEcCCC-CCCCCccCHHHHHhh--hc---cCCcEEEECCCCHHH
Confidence            3444432 222344455444444 222222  6887755533 445778876666542  11   234588999999999


Q ss_pred             HHHHHHccCCC---CCcccc-c--CHHHHHHHHHh
Q psy11600        226 IDECAKCLTGF---GGQKFM-Q--DMMPKVKWLRE  254 (277)
Q Consensus       226 v~~~~~~gpg~---ggq~F~-~--~~~~kI~~l~~  254 (277)
                      +.+..+.+|..   +|..=. +  --.+||+++-+
T Consensus       160 V~~ai~~~p~gVDvsSGvE~~pG~KD~~ki~~fi~  194 (203)
T 1v5x_A          160 LEEVLALRPYALDLASGVEEAPGVKSAEKLRALFA  194 (203)
T ss_dssp             HHHHHHHCCSEEEESGGGEEETTEECHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEeCCceecCCCCcCHHHHHHHHH
Confidence            97766656653   222111 1  23567766543

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=95.76  E-value=0.093  Score=45.73  Aligned_cols=164  Identities=13%  Similarity=0.094  Sum_probs=93.3

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCC-CC-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCC-
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPV-DN-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPV-  141 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~-d~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~-  141 (277)
                      .+|.+.++.+.++|++.+++. |.. ++     ....++.+++.+..|+-+     ..+.++.+.++|||.+.+-..+- 
T Consensus        30 ~~~~~~a~~~~~~Ga~~i~v~-d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~  108 (266)
T 2w6r_A           30 ILLRDWVVEVEKRGAGEILLT-SIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHF  108 (266)
T ss_dssp             EEHHHHHHHHHHHTCSEEEEE-ETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC--
T ss_pred             CCHHHHHHHHHHCCCCEEEEE-ecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHh
Confidence            368889999999999999764 321 21     378899998887766654     34557777789999998876522 


Q ss_pred             C--ChHHHHHHHHHhC--C-ccceeeCC----C--------------CCHHhHHHHHhh--cCceEEEEecCCCCCchhh
Q psy11600        142 D--NVPQVIRQIKEAG--M-KVGLAIKP----K--------------TPVDVIAEYIES--ADLVLIMTVEPGFGGQKFM  196 (277)
Q Consensus       142 ~--~~~~~~~~I~~~g--~-~~g~~i~p----~--------------t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~  196 (277)
                      .  ++..+.+.++..|  . +.-+++.+    |              +........+..  ++.+.+..+......+.. 
T Consensus       109 ~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-  187 (266)
T 2w6r_A          109 REIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-  187 (266)
T ss_dssp             ----CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCC-
T ss_pred             CCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCC-
Confidence            1  1222333333333  1 11144443    1              122223233333  455555444432111111 


Q ss_pred             hhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc
Q psy11600        197 QDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       197 ~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~  242 (277)
                        -++.++++++.. ++.+..-|||+- +.+.++.++|++.   |+..+.
T Consensus       188 --~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~  234 (266)
T 2w6r_A          188 --DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  234 (266)
T ss_dssp             --CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-
T ss_pred             --CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHc
Confidence              144555555543 577889999994 8888898888874   554443

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.086  Score=46.59  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=102.0

Q ss_pred             EeccccccccCCC--CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCC-CCHHHHHHHHhhCC
Q psy11600         37 LDVMDGTFVPNLT--FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD-NVPQVIRQIKEAGM  113 (277)
Q Consensus        37 ~DimDg~fvp~~~--~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d-~g~~~i~~i~~~~~  113 (277)
                      +|+.||..|.-..  |.......++        .+.....+|.+..+.+.+.|++++  |+--.+ ...++|+.+++...
T Consensus         7 iDl~~G~~V~~~~G~~~~~~~~~~~--------~~~~~~~dp~~~A~~~~~~Ga~~l--~vvDL~~~n~~~i~~i~~~~~   76 (260)
T 2agk_A            7 IDLHNGEVKQIVGGTLTSKKEDVPK--------TNFVSQHPSSYYAKLYKDRDVQGC--HVIKLGPNNDDAAREALQESP   76 (260)
T ss_dssp             EEEETTEECC----------------------------CCCHHHHHHHHHHTTCTTC--EEEEESSSCHHHHHHHHHHST
T ss_pred             EEEECCEEEEccccccccccccccc--------cccccCCCHHHHHHHHHHcCCCEE--EEEeCCCCCHHHHHHHHhcCC
Confidence            8999999985433  2211100011        111255799999999999999999  652112 35778999988877


Q ss_pred             Ccccc----hhhhhHHHHhcCCCeEEeecCCCCC-----hHHHHHHHHHhCCc-cceeeCC------C------------
Q psy11600        114 KVGQV----LQDWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMK-VGLAIKP------K------------  165 (277)
Q Consensus       114 ~~~d~----p~~~i~~~~~~g~d~it~H~E~~~~-----~~~~~~~I~~~g~~-~g~~i~p------~------------  165 (277)
                      .|+.+    ...-++.+. +||+.|.+-..+.++     +..+.+.+++.|.+ .-+++..      +            
T Consensus        77 ~pv~vgGGir~~~~~~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t  155 (260)
T 2agk_A           77 QFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLT  155 (260)
T ss_dssp             TTSEEESSCCTTTHHHHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEE
T ss_pred             ceEEEeCCCCHHHHHHHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCcccc
Confidence            77765    323667777 999999998765555     66666777776621 1122211      0            


Q ss_pred             --CCH-HhHHHHHhhcCceEEEEecC-CCCCchhhhhhhhhHHHHHhhCC---CccEEEeCCCC-cCcHHHHHHc
Q psy11600        166 --TPV-DVIAEYIESADLVLIMTVEP-GFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVG-PNTIDECAKC  232 (277)
Q Consensus       166 --t~~-~~i~~~i~~~d~vl~mav~P-gt~gq~~~~~~l~kI~~l~~~~~---~~~i~vdGgV~-~~tv~~~~~~  232 (277)
                        .++ +....+-+.++.+++..+.. |+ .+.+.   ++.++++.+..+   .+.+..-||+. ++.+..+.+.
T Consensus       156 ~~~~~~e~a~~~~~~a~~il~t~i~~dG~-~~G~d---~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~  226 (260)
T 2agk_A          156 DLELNADTFRELRKYTNEFLIHAADVEGL-CGGID---ELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDEL  226 (260)
T ss_dssp             EEEESHHHHHHHTTTCSEEEEEC--------CCCC---HHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhcCEEEEEeeccccC-cCCCC---HHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHh
Confidence              123 33344434477777777665 32 11222   334455555443   67788889985 3566666666

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=95.73  E-value=0.09  Score=46.48  Aligned_cols=172  Identities=14%  Similarity=0.140  Sum_probs=94.7

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCCcc-c-----chhh---hhHHHHhc-CCCeEEeecCC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMKVG-Q-----VLQD---WIEPMADA-NVDQYTFHVEP  140 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~~~-d-----~p~~---~i~~~~~~-g~d~it~H~E~  140 (277)
                      +++..++.+.++|+|.+++.+--.+.    ...+++.+++.....+ .     .+++   +.+...++ |++++.+..=|
T Consensus        24 ~~~~~~~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~  103 (264)
T 1xm3_A           24 SFDIQKEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIG  103 (264)
T ss_dssp             CHHHHHHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBC
T ss_pred             CHHHHHHHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeecC
Confidence            46667888999999999998642232    2234444443211110 0     1343   55566666 56787665321


Q ss_pred             CC-----ChHHHHHHHHHh---CCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCC-chhhhhhhhhHHHHHhhC
Q psy11600        141 VD-----NVPQVIRQIKEA---GMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGG-QKFMQDMMPKVKWLRENY  210 (277)
Q Consensus       141 ~~-----~~~~~~~~I~~~---g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~g-q~~~~~~l~kI~~l~~~~  210 (277)
                      ..     ......+..++.   |+..+.-..+ + .+......+ ..|++  ++..+-++. ....  -.+.++++++. 
T Consensus       104 d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~-~-~~~a~~~~~~gad~v--~~~~~~~Gt~~~~~--~~~~l~~i~~~-  176 (264)
T 1xm3_A          104 CSRSLLPDPVETLKASEQLLEEGFIVLPYTSD-D-VVLARKLEELGVHAI--MPGASPIGSGQGIL--NPLNLSFIIEQ-  176 (264)
T ss_dssp             CTTTCCBCHHHHHHHHHHHHHTTCCEEEEECS-C-HHHHHHHHHHTCSCB--EECSSSTTCCCCCS--CHHHHHHHHHH-
T ss_pred             CCcccccchHHHHHHHHHHHCCCeEEEEEcCC-C-HHHHHHHHHhCCCEE--EECCcccCCCCCCC--CHHHHHHHHhc-
Confidence            11     344677777776   7665433333 2 233433332 36776  332222211 1111  13355666653 


Q ss_pred             CCccEEEeCCCC-cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600        211 PTLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR  253 (277)
Q Consensus       211 ~~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~  253 (277)
                      .++-+.+.|||+ .+++.+++++|++.   |+..+. ++..+.+++++
T Consensus       177 ~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~  224 (264)
T 1xm3_A          177 AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK  224 (264)
T ss_dssp             CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHH
Confidence            467889999996 89999999999985   665554 45556666554

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=95.73  E-value=0.16  Score=45.02  Aligned_cols=94  Identities=14%  Similarity=0.041  Sum_probs=68.9

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhc--CCCCeeeeeeeccCcHHhHHH-HH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNK--IPKAFFETHMMVQNPQQWIEP-MA   84 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~--~~~~~~d~Hlmv~~p~~~i~~-l~   84 (277)
                      +=+.++|..+.++.++.+++. .++  +++.-  -.|.  ..||++.+++|++.  .+++++-.+++..|..+.+.. +.
T Consensus        33 ~LiVALD~~~~~~al~l~~~l-~~~--v~~~KvG~~l~--~~~G~~~v~~L~~~a~~~g~~VflDlK~~DIpnTv~~a~~  107 (260)
T 3eww_A           33 NLCLSADVSLARELLQLADAL-GPS--ICMLKTHVDIL--NDFTLDVMKELITLAKCHEFLIFENRKFADIGNTVKKQYE  107 (260)
T ss_dssp             CEEEECCCSCHHHHHHHHHHH-GGG--CSEEEECGGGC--TTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHh-CCC--ceEEEEcHHHH--HHhCHHHHHHHHHHHhhcCCeEEEEeeccccHHHHHHHHH
Confidence            446788999999888888776 233  55555  2233  35899999999862  258899999999999888765 32


Q ss_pred             ----h--cCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         85 ----D--ANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        85 ----~--ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                          +  .++|++|+|.   -+|+..+++.++.
T Consensus       108 ~a~~~~~~~ad~vTVha---~~G~~~~~aa~~~  137 (260)
T 3eww_A          108 GGIFKIASWADLVNAHV---VPGSGVVKGLQEV  137 (260)
T ss_dssp             CTTTCGGGTCSEEEEES---TTCTHHHHHHHHH
T ss_pred             HHHHhhhccCCEEEEeC---CCCHHHHHHHHHh
Confidence                1  4799999996   4566778777664

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=95.57  E-value=0.15  Score=46.30  Aligned_cols=74  Identities=11%  Similarity=0.127  Sum_probs=50.9

Q ss_pred             eeeeeeeccCcHHhHHHHHhcC--CCeEEEeccC-CCCCHHHHHHHHhh-CCC-cc-----cch---hhhhHHHHhcCCC
Q psy11600         66 FFETHMMVQNPQQWIEPMADAN--VDQYTFHVEP-VDNVPQVIRQIKEA-GMK-VG-----QVL---QDWIEPMADANVD  132 (277)
Q Consensus        66 ~~d~Hlmv~~p~~~i~~l~~ag--~d~i~~H~e~-~d~g~~~i~~i~~~-~~~-~~-----d~p---~~~i~~~~~~g~d  132 (277)
                      ++-+=|=+.++++.++.+.+.+  ++++-++.+. ...|+..|+++++. ... +.     |.|   ..+++.++++|+|
T Consensus        26 ~LiVALD~~~~~eal~l~~~l~~~v~~vKVG~~lf~~~G~~~V~~Lk~~~g~~IflDlKl~DIpnTv~~av~~~a~lGaD  105 (303)
T 3ru6_A           26 KLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFIEELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVD  105 (303)
T ss_dssp             EEEEECCCSSHHHHHHHHHHTTTSSCEEEECHHHHHHHTHHHHHHHHHHCCCEEEEEEEECSCHHHHHHHHHHHHTTTCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHhCCCccEEEeCHHHHHHhCHHHHHHHHHhhCCCEEEEeeeccCchhHHHHHHHHHhcCCC
Confidence            3444444567777776666665  4455555443 24599999999987 432 33     344   6788999999999


Q ss_pred             eEEeecC
Q psy11600        133 QYTFHVE  139 (277)
Q Consensus       133 ~it~H~E  139 (277)
                      ++|+|..
T Consensus       106 ~vTVHa~  112 (303)
T 3ru6_A          106 MINIHAS  112 (303)
T ss_dssp             EEEEEGG
T ss_pred             EEEEecc
Confidence            9999997

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=95.45  E-value=0.019  Score=51.85  Aligned_cols=63  Identities=8%  Similarity=-0.081  Sum_probs=46.3

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEec-----cC-CCC-----CHHHHHHHHhhCCCcccc---h--hhhhHHHHhcCCCeEE
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHV-----EP-VDN-----VPQVIRQIKEAGMKVGQV---L--QDWIEPMADANVDQYT  135 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~-----e~-~d~-----g~~~i~~i~~~~~~~~d~---p--~~~i~~~~~~g~d~it  135 (277)
                      -.+|.+.++.+.++|++.+++--     +- ..|     .++.++.+++.+..|+..   +  .+.++.+.++|||.|.
T Consensus        27 ~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V~  105 (305)
T 2nv1_A           27 DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID  105 (305)
T ss_dssp             EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHHHTCSEEE
T ss_pred             cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHHCCCCEEE
Confidence            44899999999999999994321     11 122     588999999887666543   4  5566788889999996

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=95.37  E-value=0.19  Score=44.91  Aligned_cols=162  Identities=12%  Similarity=0.097  Sum_probs=95.7

Q ss_pred             CCeeeeeeeccCcHHh---HHHHHhcCCC-eEEEeccCC--CC----------CHHHHHHHHhhCCCcccc---h-----
Q psy11600         64 KAFFETHMMVQNPQQW---IEPMADANVD-QYTFHVEPV--DN----------VPQVIRQIKEAGMKVGQV---L-----  119 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~~---i~~l~~ag~d-~i~~H~e~~--d~----------g~~~i~~i~~~~~~~~d~---p-----  119 (277)
                      +.|+-+-++-.+++++   ++.+.++|+| .+.+|+-.-  .+          -.++++++|+.+..|+-+   |     
T Consensus        93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~  172 (311)
T 1jub_A           93 EGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLV  172 (311)
T ss_dssp             SSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHH
Confidence            7888888887777776   5556778999 999987421  11          246788888877655543   2     


Q ss_pred             --hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhh
Q psy11600        120 --QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQ  197 (277)
Q Consensus       120 --~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~  197 (277)
                        .++++.+.++|+|.|++|--    +.            .|..+...+.-    +.+....-      .-|.+|....+
T Consensus       173 ~~~~~a~~~~~~G~d~i~v~~~----~~------------~g~~i~~~~~~----~~~~~~~~------~gG~sg~~~~~  226 (311)
T 1jub_A          173 HFDIMAEILNQFPLTYVNSVNS----IG------------NGLFIDPEAES----VVIKPKDG------FGGIGGAYIKP  226 (311)
T ss_dssp             HHHHHHHHHTTSCCCEEEECCC----EE------------EEECEETTTTE----ESCSGGGG------EEEEESGGGHH
T ss_pred             HHHHHHHHHHHcCCcEEEecCC----CC------------cCceeccCCCC----cccccCCC------CCccccccccH
Confidence              23467888889999998742    10            01111100000    00000000      01222333334


Q ss_pred             hhhhhHHHHHhhCC-CccEEEeCCC-CcCcHHHHHHccCCC---CCccc--ccCHHHHHHH
Q psy11600        198 DMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF--MQDMMPKVKW  251 (277)
Q Consensus       198 ~~l~kI~~l~~~~~-~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F--~~~~~~kI~~  251 (277)
                      ..++.+.++++..+ ++.+...||| +.+.+.++..+|++.   |...+  .|...+++++
T Consensus       227 ~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~  287 (311)
T 1jub_A          227 TALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIK  287 (311)
T ss_dssp             HHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHH
Confidence            44666777776653 7889999999 556777777889885   44444  2556666653

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=95.32  E-value=0.74  Score=39.86  Aligned_cols=148  Identities=20%  Similarity=0.272  Sum_probs=82.5

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC---CHHHHHHHHhhCCCccc------chhhhhHHHHhcCCCeEEeecCCCCChH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN---VPQVIRQIKEAGMKVGQ------VLQDWIEPMADANVDQYTFHVEPVDNVP  145 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~---g~~~i~~i~~~~~~~~d------~p~~~i~~~~~~g~d~it~H~E~~~~~~  145 (277)
                      ++++ ++ +.++|+|++-|=+....-   .++..++|.+....+..      .+++....+.+.+.|++-+|=+   ..+
T Consensus        30 ~~ed-~~-a~~~gaD~iGfIf~~~SpR~V~~~~A~~i~~~~~~~~~~v~v~v~~~ei~~~i~~~~ld~vQLHG~---E~~  104 (228)
T 4aaj_A           30 SLEE-LE-IVEKHADATGVVVNSNSKRRIPLEKAREIIENSAIPVFLVSTMVGFSEWAMAIERTGAQYIQVHSN---ALP  104 (228)
T ss_dssp             SHHH-HH-HHHTTCSEEEEECSSSSTTBCCHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHTCSEEEECSC---CCH
T ss_pred             cHHH-HH-HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHhhCCCCEEEeccCchHHHHHHHHhccchheecccc---cCH
Confidence            5655 55 467899999876543211   56667777665433221      1677778888899999999964   334


Q ss_pred             HHHHHHHH-hCCccceeeCCCC----CHHhHHHH---Hh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccE
Q psy11600        146 QVIRQIKE-AGMKVGLAIKPKT----PVDVIAEY---IE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNI  215 (277)
Q Consensus       146 ~~~~~I~~-~g~~~g~~i~p~t----~~~~i~~~---i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i  215 (277)
                      ...+.+++ .+.+.=-++....    +-+....+   +.  .+|.+++=+  +|..|+.|.-+++..+.   .   +..+
T Consensus       105 ~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs--~GGtG~~fDW~~~~~~~---~---~~p~  176 (228)
T 4aaj_A          105 QTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDT--GAGSGKLHDLRVSSLVA---R---KIPV  176 (228)
T ss_dssp             HHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC---------CCCHHHHHHH---H---HSCE
T ss_pred             HHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCC--CCCCcCcCChHHHHHhh---h---cCCe
Confidence            44455543 4544323333322    11111111   11  367766544  56667777755544432   2   2357


Q ss_pred             EEeCCCCcCcHHHHHH-ccCC
Q psy11600        216 EVDGGVGPNTIDECAK-CLTG  235 (277)
Q Consensus       216 ~vdGgV~~~tv~~~~~-~gpg  235 (277)
                      .+.||+|.+|+.+..+ .+|-
T Consensus       177 iLAGGL~peNV~~Ai~~~~P~  197 (228)
T 4aaj_A          177 IVAGGLNAENVEEVIKVVKPY  197 (228)
T ss_dssp             EEESSCCTTTHHHHHHHHCCS
T ss_pred             EEECCCCHHHHHHHHHHhCCC
Confidence            8999999999988655 5664

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=95.27  E-value=0.37  Score=47.06  Aligned_cols=151  Identities=18%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCC----CHHHHHHHHhhCCC--cccchhhhhHHHHhcCCCeEEeecCCCCChHHHHH
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDN----VPQVIRQIKEAGMK--VGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIR  149 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~----g~~~i~~i~~~~~~--~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~  149 (277)
                      +.+.+++..++|++++  |+...+.    -.+..+++++.+..  ...+..++++...+.|||  .+|+.   .-.    
T Consensus        27 l~~~ve~al~~Gv~~v--QlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~~dlA~~~gAd--GVHLg---q~d----   95 (540)
T 3nl6_A           27 LYGQVEAGLQNGVTLV--QIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGAD--GIHVG---QDD----   95 (540)
T ss_dssp             HHHHHHHHHHTTCSEE--EECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSCSHHHHHTTCS--EEEEC---TTS----
T ss_pred             HHHHHHHHHHCCCCEE--EEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCcHHHHHHcCCC--EEEEC---hhh----
Confidence            4467888899999999  7765543    23344555544421  112234577777788888  46776   322    


Q ss_pred             HHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCCCcCcHHH
Q psy11600        150 QIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNTIDE  228 (277)
Q Consensus       150 ~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~  228 (277)
                                      .++....+.+ .-+.+++.+++  +         .+.+.+..+..+. .|....|-|-      
T Consensus        96 ----------------l~~~~ar~~l-g~~~iiG~S~h--t---------~eea~~A~~~G~~~aDYv~~Gpvf------  141 (540)
T 3nl6_A           96 ----------------MPIPMIRKLV-GPDMVIGWSVG--F---------PEEVDELSKMGPDMVDYIGVGTLF------  141 (540)
T ss_dssp             ----------------SCHHHHHHHH-CTTSEEEEEEC--S---------HHHHHHHHHTCC--CCEEEESCCS------
T ss_pred             ----------------cCHHHHHHHh-CCCCEEEEECC--C---------HHHHHHHHHcCCCCCCEEEEcCCC------
Confidence                            1222233322 23677777765  2         1112222222211 5665544443      


Q ss_pred             HHHccCCCCCcccc--cCHHHHHHHHHhh-----CCCCeEEEeCCCCccCHHHhh
Q psy11600        229 CAKCLTGFGGQKFM--QDMMPKVKWLREN-----YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       229 ~~~~gpg~ggq~F~--~~~~~kI~~l~~~-----~~~~~I~VDGGI~~~~~~~~~  276 (277)
                           |....+...  +--.+.++++++.     ..++.+.+.||||++|++++.
T Consensus       142 -----~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~  191 (540)
T 3nl6_A          142 -----PTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVL  191 (540)
T ss_dssp             -----CCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHH
T ss_pred             -----CCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHH
Confidence                 221222221  1235555555543     246789999999999998874

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=95.15  E-value=0.16  Score=46.64  Aligned_cols=126  Identities=17%  Similarity=0.150  Sum_probs=86.5

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccc-------------ccccCCCCCHHHHHHHHhcCCCCeeeeeee-
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG-------------TFVPNLTFGHPVVKCLRNKIPKAFFETHMM-   72 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg-------------~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlm-   72 (277)
                      .+...|...|...+.+..+.+++.|+|.  |||-=|             .+..+..+-.++++++++. .++|+.+=+- 
T Consensus        59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~--IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~-v~~PV~vKiR~  135 (350)
T 3b0p_A           59 PIALQLAGSDPKSLAEAARIGEAFGYDE--INLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA-VRVPVTVKMRL  135 (350)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHHTTCSE--EEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH-CSSCEEEEEES
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH-hCCceEEEEec
Confidence            4677777778888999999999999998  555422             2223333445678888886 4788877332 


Q ss_pred             -cc------CcHHhHHHHHhcCCCeEEEeccCCC-------------CCHHHHHHHHhhC-CCcccc------hhhhhHH
Q psy11600         73 -VQ------NPQQWIEPMADANVDQYTFHVEPVD-------------NVPQVIRQIKEAG-MKVGQV------LQDWIEP  125 (277)
Q Consensus        73 -v~------~p~~~i~~l~~ag~d~i~~H~e~~d-------------~g~~~i~~i~~~~-~~~~d~------p~~~i~~  125 (277)
                       ..      +..+.++.+.++|+|+|++|--...             .....++++++.. ..|+-.      +++..+.
T Consensus       136 g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~  215 (350)
T 3b0p_A          136 GLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFH  215 (350)
T ss_dssp             CBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred             CcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHH
Confidence             22      2345678899999999999953211             1356788998886 555532      6666665


Q ss_pred             HHhcCCCeEEee
Q psy11600        126 MADANVDQYTFH  137 (277)
Q Consensus       126 ~~~~g~d~it~H  137 (277)
                      +.  |||.|.+-
T Consensus       216 l~--GaD~V~iG  225 (350)
T 3b0p_A          216 LK--RVDGVMLG  225 (350)
T ss_dssp             HT--TSSEEEEC
T ss_pred             Hh--CCCEEEEC
Confidence            54  89999884

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=94.81  E-value=0.36  Score=43.14  Aligned_cols=124  Identities=11%  Similarity=-0.042  Sum_probs=80.2

Q ss_pred             EeeeccccCcccHHHHHHHHHHcCCC-EEEEeccccccccCC----CCC------HHHHHHHHhcCCCCeeeeeeecc-C
Q psy11600          8 IGPSILNSDLSNLHSESQNLLDSGAD-YLHLDVMDGTFVPNL----TFG------HPVVKCLRNKIPKAFFETHMMVQ-N   75 (277)
Q Consensus         8 ~~~s~~~~d~~~l~~~~~~l~~~~~~-~~h~DimDg~fvp~~----~~g------~~~v~~l~~~~~~~~~d~Hlmv~-~   75 (277)
                      +..||...+...+.+..+.+++.|+| .+-+.+-    +||.    .||      .++++++|+. .++|+.+=+-.. +
T Consensus        96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~----~P~~~g~~~~g~~~e~~~~iv~~vr~~-~~~Pv~vKi~~~~~  170 (311)
T 1jub_A           96 IFFSIAGMSAAENIAMLKKIQESDFSGITELNLS----CPNVPGEPQLAYDFEATEKLLKEVFTF-FTKPLGVKLPPYFD  170 (311)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESC----CCCSSSCCCGGGCHHHHHHHHHHHTTT-CCSCEEEEECCCCS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEecc----CCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEEEEECCCCC
Confidence            56678877888999999999999999 8555442    3332    233      4778888875 577777644321 2


Q ss_pred             cH---HhHHHHHhcCCCeEEEeccC-----CC---------------C--C-------HHHHHHHHhhC--CCcccc---
Q psy11600         76 PQ---QWIEPMADANVDQYTFHVEP-----VD---------------N--V-------PQVIRQIKEAG--MKVGQV---  118 (277)
Q Consensus        76 p~---~~i~~l~~ag~d~i~~H~e~-----~d---------------~--g-------~~~i~~i~~~~--~~~~d~---  118 (277)
                      ..   +..+.+.++|+|.+++|--.     .+               |  |       ...++++++..  +.|+-.   
T Consensus       171 ~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GG  250 (311)
T 1jub_A          171 LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGG  250 (311)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESS
T ss_pred             HHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECC
Confidence            22   23677788999999887321     00               0  2       35677777765  444422   


Q ss_pred             ---hhhhhHHHHhcCCCeEEee
Q psy11600        119 ---LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       119 ---p~~~i~~~~~~g~d~it~H  137 (277)
                         +++..+.+ .+|||.|.+-
T Consensus       251 I~~~~da~~~l-~~GAd~V~vg  271 (311)
T 1jub_A          251 IETGQDAFEHL-LCGATMLQIG  271 (311)
T ss_dssp             CCSHHHHHHHH-HHTCSEEEEC
T ss_pred             CCCHHHHHHHH-HcCCCEEEEc
Confidence               66666655 5788888773

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=94.74  E-value=0.33  Score=41.25  Aligned_cols=101  Identities=15%  Similarity=0.064  Sum_probs=69.2

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      .++++...+.|+|++|.        |+  +.++.++..++.  +.++-..  +.+|.+. ....+.|+|++.++....-|
T Consensus        73 ~d~~~~A~~~GAd~v~~--------~~--~d~~v~~~~~~~--g~~~i~G--~~t~~e~-~~A~~~Gad~v~~fpa~~~g  137 (207)
T 2yw3_A           73 PKEAEAALEAGAAFLVS--------PG--LLEEVAALAQAR--GVPYLPG--VLTPTEV-ERALALGLSALKFFPAEPFQ  137 (207)
T ss_dssp             HHHHHHHHHHTCSEEEE--------SS--CCHHHHHHHHHH--TCCEEEE--ECSHHHH-HHHHHTTCCEEEETTTTTTT
T ss_pred             HHHHHHHHHcCCCEEEc--------CC--CCHHHHHHHHHh--CCCEEec--CCCHHHH-HHHHHCCCCEEEEecCcccc
Confidence            37788888899999983        32  345666766654  3444433  5566654 45567899999997632235


Q ss_pred             CHHHHHHHHhhC-CCcccc----hhhhhHHHHhcCCCeEEe
Q psy11600        101 VPQVIRQIKEAG-MKVGQV----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       101 g~~~i~~i~~~~-~~~~d~----p~~~i~~~~~~g~d~it~  136 (277)
                      |+..+++++... ..|+-.    -.+=+.++.++|++.+.+
T Consensus       138 G~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav  178 (207)
T 2yw3_A          138 GVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVG  178 (207)
T ss_dssp             HHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEE
T ss_pred             CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEE
Confidence            899999999876 455433    346677788889887765

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=94.52  E-value=0.3  Score=42.38  Aligned_cols=115  Identities=10%  Similarity=0.059  Sum_probs=73.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+.++.+++.|++.+|+==+++.+. ......+.++++++. .++|+-+.=-+.++.+ ++.+.++|+|.+  |+-..
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~-~~iPvi~~ggi~~~~~-i~~~~~~Gad~v--~lg~~  105 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPL-TTLPIIASGGAGKMEH-FLEAFLAGADKA--LAASV  105 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGG-CCSCEEEESCCCSTHH-HHHHHHHTCSEE--ECCCC
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcccC-CCcccHHHHHHHHHh-cCCCEEEECCCCCHHH-HHHHHHcCCcHh--hhhHH
Confidence            567788889999999999711122221 122346889999986 6888888666666554 566778899999  55443


Q ss_pred             CC----CHHHHHHHHhhCC-------Ccccc---------------------hhhhhHHHHhcCCCeEEeec
Q psy11600         99 DN----VPQVIRQIKEAGM-------KVGQV---------------------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        99 d~----g~~~i~~i~~~~~-------~~~d~---------------------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ..    .+..++.+.+...       ..+++                     +.++++.+.++|++.|.+|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~  177 (266)
T 2w6r_A          106 FHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTS  177 (266)
T ss_dssp             C------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEe
Confidence            32    4566666543321       11222                     35677888899999999874

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=94.43  E-value=0.39  Score=43.47  Aligned_cols=166  Identities=10%  Similarity=0.078  Sum_probs=95.0

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccC-------cHHhHHHHHh--cCCCeEEEeccCC--CC---------CHHHHHHHHhhC
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQN-------PQQWIEPMAD--ANVDQYTFHVEPV--DN---------VPQVIRQIKEAG  112 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~-------p~~~i~~l~~--ag~d~i~~H~e~~--d~---------g~~~i~~i~~~~  112 (277)
                      .+++.+++.-.+.++-+.+.-.+       ++++.+.+..  .|+|.+.+|+-+-  .|         ..++++++|+..
T Consensus       122 ~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~  201 (336)
T 1f76_A          122 NLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQ  201 (336)
T ss_dssp             HHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence            45666665323557888887655       5666555542  3799999997532  11         246888888875


Q ss_pred             ---------CCcccc---h-------hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHH
Q psy11600        113 ---------MKVGQV---L-------QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAE  173 (277)
Q Consensus       113 ---------~~~~d~---p-------~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~  173 (277)
                               ..|+-+   |       .+.++.+.++|+|.|++|--   ....           ... ..+  +.     
T Consensus       202 ~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~---~~~~-----------~~~-~~~--~~-----  259 (336)
T 1f76_A          202 NDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT---TLDR-----------SLV-QGM--KN-----  259 (336)
T ss_dssp             HHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC---BCCC-----------TTS-TTS--TT-----
T ss_pred             HhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC---cccc-----------ccc-ccc--cc-----
Confidence                     455533   2       33467888999999999742   1000           000 000  00     


Q ss_pred             HHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCCC-cCcHHHHHHccCCC---CCccc--ccCHH
Q psy11600        174 YIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKCLTGF---GGQKF--MQDMM  246 (277)
Q Consensus       174 ~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F--~~~~~  246 (277)
                       ...         ..|.+|....+..++.+.++++..+ ++.+...|||. .+.+.++.++|++.   |....  .|...
T Consensus       260 -~~~---------~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~  329 (336)
T 1f76_A          260 -CDQ---------TGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLI  329 (336)
T ss_dssp             -TTC---------SSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHH
T ss_pred             -ccc---------CCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHH
Confidence             000         0011232222344556666666543 78899999996 56777788889886   44332  35666


Q ss_pred             HHHH
Q psy11600        247 PKVK  250 (277)
Q Consensus       247 ~kI~  250 (277)
                      .|++
T Consensus       330 ~~i~  333 (336)
T 1f76_A          330 KEIV  333 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=94.37  E-value=1.7  Score=39.71  Aligned_cols=224  Identities=11%  Similarity=0.048  Sum_probs=110.9

Q ss_pred             HHHHHHHHHcCCCEEEEecc-----ccccccC--CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         21 HSESQNLLDSGADYLHLDVM-----DGTFVPN--LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~Dim-----Dg~fvp~--~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      .++.+..++.|+..+  .+.     |-.|--.  ..=+|+.++++++. .++|+..=..+.+ ..+.+.+.++|+|+|- 
T Consensus        27 ~e~A~~ae~aGA~aI--~~l~~v~~d~~~~~G~arm~~p~~i~~I~~a-v~iPV~~K~rig~-~~e~qilea~GaD~Id-  101 (330)
T 2yzr_A           27 VEQAQIAEEAGAVAV--MALERVPADIRAAGGVARMSDPALIEEIMDA-VSIPVMAKCRIGH-TTEALVLEAIGVDMID-  101 (330)
T ss_dssp             HHHHHHHHHHTCSEE--EECSSCHHHHC--CCCCCCCCHHHHHHHHHH-CSSCEEEEEETTC-HHHHHHHHHTTCSEEE-
T ss_pred             HHHHHHHHHcCCCEE--EecCCccccccCCcchhhcCCHHHHHHHHHh-cCCCeEEEEeecc-hHHHHHHHHcCCCEEe-
Confidence            456777888999994  332     3222111  11279999999987 7899998888866 3456677789999982 


Q ss_pred             eccCCCCCHHHHHHH-HhhCCCcccc----hhhhhHHHHhcCCCeEEeecCCCC-ChHHHHHHHHHhCCcccee-eCCCC
Q psy11600         94 HVEPVDNVPQVIRQI-KEAGMKVGQV----LQDWIEPMADANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLA-IKPKT  166 (277)
Q Consensus        94 H~e~~d~g~~~i~~i-~~~~~~~~d~----p~~~i~~~~~~g~d~it~H~E~~~-~~~~~~~~I~~~g~~~g~~-i~p~t  166 (277)
                      -.+..+-. +.+..+ |+....++-.    ..+-+... +.||++|+.|-||+. .+.+..+.+|.+.  .++. +...+
T Consensus       102 ~s~~l~p~-d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~--~~~~~~s~~~  177 (330)
T 2yzr_A          102 ESEVLTQA-DPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMN--EAIAQLQRMT  177 (330)
T ss_dssp             EETTSCCS-CSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHH--HHHHHHTTSC
T ss_pred             hhccCCHH-HHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHH--HHHHHhccCC
Confidence            11111100 000000 0000111111    22233333 889999999998765 3444422222100  0000 01111


Q ss_pred             CHHhHHHH--HhhcCce---------EE--------EEecCCCCCchhhhhhhhhHHHHHhhCC-CccEEEeCCC-CcCc
Q psy11600        167 PVDVIAEY--IESADLV---------LI--------MTVEPGFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNT  225 (277)
Q Consensus       167 ~~~~i~~~--i~~~d~v---------l~--------mav~Pgt~gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV-~~~t  225 (277)
                       -+.+...  -..+|++         .+        -.+.|.+.-.......++.++++++... -+-+...||| +.++
T Consensus       178 -~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI~Tped  256 (330)
T 2yzr_A          178 -DEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPAD  256 (330)
T ss_dssp             -HHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCCCSHHH
T ss_pred             -HHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCCCCHHH
Confidence             1111110  0112220         00        0111111000001222344555554321 1222578999 5999


Q ss_pred             HHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        226 IDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       226 v~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      +..+++.|++.   |+..|. ++.....+++++
T Consensus       257 a~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~  289 (330)
T 2yzr_A          257 AALMMQLGSDGVFVGSGIFKSENPLERARAIVE  289 (330)
T ss_dssp             HHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHH
T ss_pred             HHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHH
Confidence            99999999885   777775 567777777765

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=94.35  E-value=0.27  Score=45.01  Aligned_cols=118  Identities=12%  Similarity=0.147  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc----cc-ccC--C---CCC----------HHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG----TF-VPN--L---TFG----------HPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg----~f-vp~--~---~~g----------~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      .+.+..++++++|.|.+-+-.--|    +| .|+  -   .||          .++++++|+.. +.++-+=|-..    
T Consensus       145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~  223 (340)
T 3gr7_A          145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHP  223 (340)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCST
T ss_pred             HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccC
Confidence            344556667888999944333211    11 121  1   233          68999999986 77777766532    


Q ss_pred             ------CcHHhHHHHHhcCCCeEEEeccC--------CCC-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcC-CCe
Q psy11600         75 ------NPQQWIEPMADANVDQYTFHVEP--------VDN-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADAN-VDQ  133 (277)
Q Consensus        75 ------~p~~~i~~l~~ag~d~i~~H~e~--------~d~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g-~d~  133 (277)
                            ++.+.++.+.++|+|++++|.-.        ..+ ...+++++|+....|+-.     -.+-++.+.+.| ||.
T Consensus       224 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~  303 (340)
T 3gr7_A          224 DGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADL  303 (340)
T ss_dssp             TSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeE
Confidence                  34556888999999999888311        011 356788999887666533     123445556666 999


Q ss_pred             EEee
Q psy11600        134 YTFH  137 (277)
Q Consensus       134 it~H  137 (277)
                      |.+=
T Consensus       304 V~iG  307 (340)
T 3gr7_A          304 VFLG  307 (340)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9883

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=94.31  E-value=0.7  Score=41.12  Aligned_cols=122  Identities=11%  Similarity=0.035  Sum_probs=77.0

Q ss_pred             Eeeec--cccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          8 IGPSI--LNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         8 ~~~s~--~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      =|||-  ++.| .+..+..+..++.|++.+|+=--++-|-    =+.+.++.+|+. .++|+..-=.+.++. ++.....
T Consensus        68 aSPSkG~i~~~-~dp~~~A~~y~~~GA~~IsVltd~~~f~----Gs~~~L~~ir~~-v~lPVl~Kdfi~d~~-qi~ea~~  140 (272)
T 3tsm_A           68 ASPSKGLIRPD-FDPPALAKAYEEGGAACLSVLTDTPSFQ----GAPEFLTAARQA-CSLPALRKDFLFDPY-QVYEARS  140 (272)
T ss_dssp             EETTTEESCSS-CCHHHHHHHHHHTTCSEEEEECCSTTTC----CCHHHHHHHHHT-SSSCEEEESCCCSTH-HHHHHHH
T ss_pred             CCCCCCccCCC-CCHHHHHHHHHHCCCCEEEEeccccccC----CCHHHHHHHHHh-cCCCEEECCccCCHH-HHHHHHH
Confidence            36773  4333 3566777888999999999755333332    267889999985 788886544555665 5777889


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHH----HhhCCCc-ccc-hhhhhHHHHhcCCCeEEeec
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQI----KEAGMKV-GQV-LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i----~~~~~~~-~d~-p~~~i~~~~~~g~d~it~H~  138 (277)
                      +|||.+  ++.+....+..++.+    ++.+..+ .++ ..+-++...++|+++|.+..
T Consensus       141 ~GAD~V--lLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinn  197 (272)
T 3tsm_A          141 WGADCI--LIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNN  197 (272)
T ss_dssp             TTCSEE--EEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEEC
T ss_pred             cCCCEE--EEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence            999999  544433334444443    4443332 233 23334556678888888763

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=94.26  E-value=0.36  Score=43.43  Aligned_cols=88  Identities=17%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCC--CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLT--FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      .+...+.++++.+.+.|+..+++  ..|. -|.+.  .=.++++.+++.  ++.+.+..-.. ..+.++.+.++|++.+.
T Consensus        84 ls~eei~~~i~~~~~~g~~~i~~--~gGe-~p~~~~~~~~~li~~i~~~--~~~i~~s~g~l-~~e~l~~L~~ag~~~v~  157 (348)
T 3iix_A           84 MTPEEIVERARLAVQFGAKTIVL--QSGE-DPYXMPDVISDIVKEIKKM--GVAVTLSLGEW-PREYYEKWKEAGADRYL  157 (348)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEE--EESC-CGGGTTHHHHHHHHHHHTT--SCEEEEECCCC-CHHHHHHHHHHTCCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE--EeCC-CCCccHHHHHHHHHHHHhc--CceEEEecCCC-CHHHHHHHHHhCCCEEe
Confidence            34556677788888889998655  6766 13332  224567777753  33333222211 35578899999999996


Q ss_pred             EeccCCCCCHHHHHHHHh
Q psy11600         93 FHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        93 ~H~e~~d~g~~~i~~i~~  110 (277)
                      +-+|+.+  +.+.+.+++
T Consensus       158 i~let~~--~~~~~~i~~  173 (348)
T 3iix_A          158 LRHETAN--PVLHRKLRP  173 (348)
T ss_dssp             CCCBCSC--HHHHHHHST
T ss_pred             eeeeeCC--HHHHHHhCC
Confidence            5555543  555555543

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=94.24  E-value=0.75  Score=40.89  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=44.1

Q ss_pred             HHHHHHHHHcCCCEEEEeccc---cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         21 HSESQNLLDSGADYLHLDVMD---GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimD---g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      .+-++.|.+.|+++  +.+-=   +.|+|.+.--.+.++.+++. ++.++.+|+  .| .+.++...++|++.+++-
T Consensus        29 ~~i~~~L~~~Gv~~--IE~g~~~~~~~~p~~~~~~e~~~~i~~~-~~~~v~~l~--~n-~~~i~~a~~~G~~~V~i~   99 (295)
T 1ydn_A           29 IALINRLSDCGYAR--IEATSFVSPKWVPQLADSREVMAGIRRA-DGVRYSVLV--PN-MKGYEAAAAAHADEIAVF   99 (295)
T ss_dssp             HHHHHHHTTTTCSE--EEEEECSCTTTCGGGTTHHHHHHHSCCC-SSSEEEEEC--SS-HHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHcCcCE--EEEccCcCccccccccCHHHHHHHHHhC-CCCEEEEEe--CC-HHHHHHHHHCCCCEEEEE
Confidence            34456677777776  33321   33455544334677888764 788888876  45 456888899999999443

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=94.17  E-value=0.17  Score=45.32  Aligned_cols=124  Identities=11%  Similarity=-0.019  Sum_probs=81.3

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCC---EEEEeccccccccCC----CCC------HHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGAD---YLHLDVMDGTFVPNL----TFG------HPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~---~~h~DimDg~fvp~~----~~g------~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      .+..+|...+...+.+..+.+.+.|+|   .+++.+-    .|+.    .||      .+.++++|+. .++|+.+=+-.
T Consensus        95 p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~----~P~~~g~~~~g~~~~~~~~ii~~vr~~-~~~Pv~vK~~~  169 (314)
T 2e6f_A           95 PLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLS----CPNVPGKPQVAYDFEAMRTYLQQVSLA-YGLPFGVKMPP  169 (314)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC----CCCSTTCCCGGGSHHHHHHHHHHHHHH-HCSCEEEEECC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcC----CCCCCCchhhcCCHHHHHHHHHHHHHh-cCCCEEEEECC
Confidence            467788888888899999999999999   8888764    2332    122      4688899886 46777665432


Q ss_pred             c-C---cHHhHHHHHhcC-CCeEEEec--------cCCC-----------C---C-------HHHHHHHHhhC-CCcccc
Q psy11600         74 Q-N---PQQWIEPMADAN-VDQYTFHV--------EPVD-----------N---V-------PQVIRQIKEAG-MKVGQV  118 (277)
Q Consensus        74 ~-~---p~~~i~~l~~ag-~d~i~~H~--------e~~d-----------~---g-------~~~i~~i~~~~-~~~~d~  118 (277)
                      . +   ..+..+.+.++| +|.+++|-        |...           +   |       ...++++++.. ..|+-.
T Consensus       170 ~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~  249 (314)
T 2e6f_A          170 YFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFG  249 (314)
T ss_dssp             CCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEE
Confidence            2 2   222367778999 99998773        2100           0   2       46777777776 444422


Q ss_pred             ------hhhhhHHHHhcCCCeEEe
Q psy11600        119 ------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 ------p~~~i~~~~~~g~d~it~  136 (277)
                            +++..+.+ .+|||.|.+
T Consensus       250 ~GGI~~~~da~~~l-~~GAd~V~i  272 (314)
T 2e6f_A          250 CGGVYSGEDAFLHI-LAGASMVQV  272 (314)
T ss_dssp             ESSCCSHHHHHHHH-HHTCSSEEE
T ss_pred             ECCCCCHHHHHHHH-HcCCCEEEE
Confidence                  56555555 568888776

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=94.14  E-value=0.14  Score=43.99  Aligned_cols=174  Identities=10%  Similarity=0.179  Sum_probs=97.2

Q ss_pred             EEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC-C----C-CCHHHHHHHH
Q psy11600         36 HLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP-V----D-NVPQVIRQIK  109 (277)
Q Consensus        36 h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~-~----d-~g~~~i~~i~  109 (277)
                      -+|++||..|.- .-|.      ++.++       ....+|.+.++.+.++|+++++++ |. .    . .....++.++
T Consensus         6 ~id~~~g~~vk~-~~G~------~~~~~-------~~~~~~~~~a~~~~~~Gad~i~v~-d~~~~~~~~~~~~~~i~~i~   70 (241)
T 1qo2_A            6 AIDLFRGKVARM-IKGR------KENTI-------FYEKDPVELVEKLIEEGFTLIHVV-DLSNAIENSGENLPVLEKLS   70 (241)
T ss_dssp             EEEEETTEEEEE-GGGC------GGGEE-------EESSCHHHHHHHHHHTTCCCEEEE-EHHHHHHCCCTTHHHHHHGG
T ss_pred             EEEeeCCEEEEE-eccc------cccce-------ecCcCHHHHHHHHHHcCCCEEEEe-cccccccCCchhHHHHHHHH
Confidence            379999987732 1111      11111       356789999999999999999876 21 1    1 1356677776


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC--------------CCHHh
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK--------------TPVDV  170 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~--------------t~~~~  170 (277)
                       ....|+-+     ..+.++.+.++|||.+.+-..+-.++..+.+. +..|-..-+++.+.              ++...
T Consensus        71 -~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e  148 (241)
T 1qo2_A           71 -EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVS  148 (241)
T ss_dssp             -GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCHHH
T ss_pred             -hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhChHHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCHHH
Confidence             54445543     34567778889999987754300011223344 55552223444431              23333


Q ss_pred             HHHHHhh--cCceEEEEecC-C-CCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHc
Q psy11600        171 IAEYIES--ADLVLIMTVEP-G-FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKC  232 (277)
Q Consensus       171 i~~~i~~--~d~vl~mav~P-g-t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~  232 (277)
                      +...+.+  ++.+.+..+.. | ..|  ..   ++.++++++.. ++.+..-|||+- +.+..+.+.
T Consensus       149 ~~~~~~~~G~~~i~~t~~~~~g~~~g--~~---~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~  209 (241)
T 1qo2_A          149 LLKRLKEYGLEEIVHTEIEKDGTLQE--HD---FSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKV  209 (241)
T ss_dssp             HHHHHHTTTCCEEEEEETTHHHHTCC--CC---HHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEEeecccccCCc--CC---HHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhc
Confidence            3333444  45555444322 1 111  11   34445554432 567888999994 888888887

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=94.00  E-value=0.38  Score=46.33  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--ecc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVE   96 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e   96 (277)
                      +..+.++.+.+.|+|.+|+|..-|+-    .+-.+.++++|+.+|++++-+. -+ .-.+.++.+.++|+|.+.+  |.-
T Consensus       255 ~~~~~a~~~~~aG~d~v~i~~~~G~~----~~~~~~i~~i~~~~~~~pvi~~-~v-~t~~~a~~l~~aGad~I~vg~~~G  328 (514)
T 1jcn_A          255 DDKYRLDLLTQAGVDVIVLDSSQGNS----VYQIAMVHYIKQKYPHLQVIGG-NV-VTAAQAKNLIDAGVDGLRVGMGCG  328 (514)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCCCS----HHHHHHHHHHHHHCTTCEEEEE-EE-CSHHHHHHHHHHTCSEEEECSSCS
T ss_pred             hhHHHHHHHHHcCCCEEEeeccCCcc----hhHHHHHHHHHHhCCCCceEec-cc-chHHHHHHHHHcCCCEEEECCCCC
Confidence            45678888999999999999876532    2345789999998778887653 12 3345688899999999955  111


Q ss_pred             CC--------CC-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEee
Q psy11600         97 PV--------DN-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        97 ~~--------d~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      ..        .|     ....++++++....|+-.      |.+..+.++ +|||.+.+=
T Consensus       329 ~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala-~GAd~V~iG  387 (514)
T 1jcn_A          329 SICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALA-LGASTVMMG  387 (514)
T ss_dssp             CCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEES
T ss_pred             cccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH-cCCCeeeEC
Confidence            00        11     123445555544444432      566665555 788888764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=93.85  E-value=0.54  Score=49.12  Aligned_cols=159  Identities=16%  Similarity=0.200  Sum_probs=91.5

Q ss_pred             HHHHHhcCCCCeeeeeeecc-CcHHh---HHHHHhcCCCeEEEeccCCC-------C---------CHHHHHHHHhhCCC
Q psy11600         55 VKCLRNKIPKAFFETHMMVQ-NPQQW---IEPMADANVDQYTFHVEPVD-------N---------VPQVIRQIKEAGMK  114 (277)
Q Consensus        55 v~~l~~~~~~~~~d~Hlmv~-~p~~~---i~~l~~ag~d~i~~H~e~~d-------~---------g~~~i~~i~~~~~~  114 (277)
                      ++.+++..|+.++-+-+|.. +++++   ++.+.++|+|.|.+|+..-.       |         -.++++++|+.+..
T Consensus       625 i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~  704 (1025)
T 1gte_A          625 VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQI  704 (1025)
T ss_dssp             HHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCC
Confidence            45567656788898988865 56655   55566789999999976311       1         24588889888766


Q ss_pred             cccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe
Q psy11600        115 VGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV  186 (277)
Q Consensus       115 ~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav  186 (277)
                      |+.+        ..+.++.+.++|+|.|++.-    ++..          ..++.+. +++.    +.+...+.    +-
T Consensus       705 Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~N----t~~~----------~~~~~~~-~~~~----~~~~~~gr----~~  761 (1025)
T 1gte_A          705 PFFAKLTPNVTDIVSIARAAKEGGADGVTATN----TVSG----------LMGLKAD-GTPW----PAVGAGKR----TT  761 (1025)
T ss_dssp             CEEEEECSCSSCHHHHHHHHHHHTCSEEEECC----CEEE----------CCCBCTT-SCBS----SCBTTTTB----BC
T ss_pred             ceEEEeCCChHHHHHHHHHHHHcCCCEEEEec----cccc----------ccccccc-cccc----cccccccc----cc
Confidence            6544        34567888889999998842    1000          0000000 0000    00000000    00


Q ss_pred             cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC
Q psy11600        187 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF  236 (277)
Q Consensus       187 ~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~  236 (277)
                      ..|.+|....+-.++.+.++++..+++.+...||| +...+.+++.+|++.
T Consensus       762 ~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~  812 (1025)
T 1gte_A          762 YGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASV  812 (1025)
T ss_dssp             CEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             CCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCE
Confidence            11222323333334567777766677899999999 446666667788875

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=93.59  E-value=0.49  Score=43.68  Aligned_cols=119  Identities=14%  Similarity=0.157  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc----ccc-c---------------CCCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG----TFV-P---------------NLTFGHPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg----~fv-p---------------~~~~g~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      .+.+..++++++|.|.+++..--|    +|. |               ...|-.++++++|+....-++-+-|-..    
T Consensus       162 ~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~  241 (364)
T 1vyr_A          162 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ  241 (364)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred             HHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccc
Confidence            455666677889999988765432    221 2               2334567899999986522666533322    


Q ss_pred             -------Cc---HHhHHHHHhcCCCeEEEeccCC----CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600         75 -------NP---QQWIEPMADANVDQYTFHVEPV----DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT  135 (277)
Q Consensus        75 -------~p---~~~i~~l~~ag~d~i~~H~e~~----d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it  135 (277)
                             ++   .+.++.+.++|+|++++|.-..    ......++.+|+....|+-.     |++..+.+.+-+||.|.
T Consensus       242 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~  321 (364)
T 1vyr_A          242 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA  321 (364)
T ss_dssp             TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEE
Confidence                   11   2237788899999999885321    12467888999987765532     55555555544599998


Q ss_pred             ee
Q psy11600        136 FH  137 (277)
Q Consensus       136 ~H  137 (277)
                      +=
T Consensus       322 ~g  323 (364)
T 1vyr_A          322 FG  323 (364)
T ss_dssp             ES
T ss_pred             EC
Confidence            83

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=93.59  E-value=0.61  Score=41.78  Aligned_cols=203  Identities=14%  Similarity=0.089  Sum_probs=111.6

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccC-C-CC-------CHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPN-L-TF-------GHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY   91 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~-~-~~-------g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i   91 (277)
                      .++-+..+++|+..  +=+.++  +|. + .+       +|+.|+++++. .++|+-.=..+.+ ..+.+.+.++|+|+|
T Consensus        21 ~eqa~iae~aGa~a--v~~l~~--~p~d~r~~gGv~Rm~dp~~I~~I~~a-VsIPVm~k~righ-~~EAqilea~GaD~I   94 (291)
T 3o07_A           21 PEQAKIAEKSGACA--VMALES--IPADMRKSGKVCRMSDPKMIKDIMNS-VSIPVMAKVRIGH-FVEAQIIEALEVDYI   94 (291)
T ss_dssp             HHHHHHHHHHTCSE--EEECSS--CHHHHHTTTCCCCCCCHHHHHHHHTT-CSSCEEEEEETTC-HHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHhCchh--hhhccC--CCchhhhcCCccccCCHHHHHHHHHh-CCCCeEEEEecCc-HHHHHHHHHcCCCEE
Confidence            35677889999988  444421  111 1 12       49999999986 7999988888877 556778899999998


Q ss_pred             EEeccCCCC--CHHHHHHHHhhC-CCcccc-hhhhhHH--HHhcCCCeEEeecCCCC-ChHHHHHHHHHhCCccceeeCC
Q psy11600         92 TFHVEPVDN--VPQVIRQIKEAG-MKVGQV-LQDWIEP--MADANVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus        92 ~~H~e~~d~--g~~~i~~i~~~~-~~~~d~-p~~~i~~--~~~~g~d~it~H~E~~~-~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                          |..+.  -.+.+..+.++. +.|+-+ -.+.=+.  -++.||++|.-.-||++ +..+..+.+|.+.  .++.--.
T Consensus        95 ----Desevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~--~~i~~l~  168 (291)
T 3o07_A           95 ----DESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRIT--EEIKACQ  168 (291)
T ss_dssp             ----EEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHH--HHHHHHH
T ss_pred             ----ecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHH--HHHHHHH
Confidence                32221  000111111111 112211 1112222  25789999999877554 4444444444321  0000000


Q ss_pred             CC-CHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEE--eCCC-CcCcHHHHHHccCCC---C
Q psy11600        165 KT-PVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEV--DGGV-GPNTIDECAKCLTGF---G  237 (277)
Q Consensus       165 ~t-~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~v--dGgV-~~~tv~~~~~~gpg~---g  237 (277)
                      |. +-+.+..+-+.        ..+          -++.|+++++. .++.+.+  .||| +...+..+++.|++.   |
T Consensus       169 g~~t~~el~~~a~~--------~~a----------d~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG  229 (291)
T 3o07_A          169 QLKSEDDIAKVAEE--------MRV----------PVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVG  229 (291)
T ss_dssp             TCCCHHHHHHHHHH--------HTS----------CHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC
T ss_pred             cCCCHHHhhhcccc--------cCC----------CHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc
Confidence            11 00111011000        011          14456666654 3444433  6999 789999999999985   8


Q ss_pred             Ccccc-cCHHHHHHHHHh
Q psy11600        238 GQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       238 gq~F~-~~~~~kI~~l~~  254 (277)
                      +..|. ++.....+++++
T Consensus       230 rAI~~s~DP~~~Akafv~  247 (291)
T 3o07_A          230 SGIFKSSNPVRLATAVVE  247 (291)
T ss_dssp             GGGGGSSCHHHHHHHHHH
T ss_pred             hHHhCCCCHHHHHHHHHH
Confidence            88887 566677776665

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=93.51  E-value=0.77  Score=39.20  Aligned_cols=106  Identities=12%  Similarity=0.095  Sum_probs=54.5

Q ss_pred             hHHHHhcCCCeEEe-ecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhh
Q psy11600        123 IEPMADANVDQYTF-HVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMP  201 (277)
Q Consensus       123 i~~~~~~g~d~it~-H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~  201 (277)
                      ++.+.++|||++.+ |.|-.....++.+                     ........++.+++.+.|...          
T Consensus        75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~---------------------~~~~a~~~Gl~~iv~v~~~~e----------  123 (219)
T 2h6r_A           75 AEAIKDCGCKGTLINHSEKRMLLADIEA---------------------VINKCKNLGLETIVCTNNINT----------  123 (219)
T ss_dssp             HHHHHHHTCCEEEESBTTBCCBHHHHHH---------------------HHHHHHHHTCEEEEEESSSHH----------
T ss_pred             HHHHHHcCCCEEEECCccccCCHHHHHH---------------------HHHHHHHCCCeEEEEeCCchH----------
Confidence            89999999999999 7651111222222                     233456678888888877431          


Q ss_pred             hHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CC---cccccC-HHHHHHHHHhhCCCCeEEEeCCCCc-cCHH
Q psy11600        202 KVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GG---QKFMQD-MMPKVKWLRENYPTLNIEVDGGVGP-NTID  273 (277)
Q Consensus       202 kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---gg---q~F~~~-~~~kI~~l~~~~~~~~I~VDGGI~~-~~~~  273 (277)
                       .+.+.....  ++.-              ++|.+   .|   +.|.++ ..+-.+.+|+...+..+.+.|||+. +.++
T Consensus       124 -~~~~~~~~~--~~i~--------------~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~  186 (219)
T 2h6r_A          124 -SKAVAALSP--DCIA--------------VEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVK  186 (219)
T ss_dssp             -HHHHTTTCC--SEEE--------------ECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHH
T ss_pred             -HHHHHhCCC--CEEE--------------EEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHH
Confidence             233322211  2221              12332   23   566655 3333334444434678999999996 5555


Q ss_pred             Hhh
Q psy11600        274 ECA  276 (277)
Q Consensus       274 ~~~  276 (277)
                      .+.
T Consensus       187 ~~~  189 (219)
T 2h6r_A          187 AAL  189 (219)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.44  E-value=1.8  Score=38.61  Aligned_cols=66  Identities=21%  Similarity=0.402  Sum_probs=42.3

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccc-ccc-----ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeE
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMD-GTF-----VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQY   91 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimD-g~f-----vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i   91 (277)
                      ....+-++.|.+.|+++     ++ |.|     +|.+.-..+.++.+++. ++.++-+|+  .| .+.++...++|++.+
T Consensus        30 e~k~~i~~~L~~~Gv~~-----IE~g~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~l~--~~-~~~i~~a~~aG~~~v  100 (302)
T 2ftp_A           30 ADKIRLVDDLSAAGLDY-----IEVGSFVSPKWVPQMAGSAEVFAGIRQR-PGVTYAALA--PN-LKGFEAALESGVKEV  100 (302)
T ss_dssp             HHHHHHHHHHHHTTCSE-----EEEEECSCTTTCGGGTTHHHHHHHSCCC-TTSEEEEEC--CS-HHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHcCcCE-----EEECCCcCccccccccCHHHHHHHhhhc-CCCEEEEEe--CC-HHHHHHHHhCCcCEE
Confidence            33445566777888776     34 434     34433223456777654 788888887  33 457888899999998


Q ss_pred             E
Q psy11600         92 T   92 (277)
Q Consensus        92 ~   92 (277)
                      +
T Consensus       101 ~  101 (302)
T 2ftp_A          101 A  101 (302)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=93.22  E-value=0.29  Score=42.13  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=73.9

Q ss_pred             cHHHHHHHHHHcCCCEEEE-eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600         19 NLHSESQNLLDSGADYLHL-DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP   97 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~-DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~   97 (277)
                      +..+.++.+++.|+|++|+ |. ++.+. ......+.++++++. .++|+-+.=.+.++ +.++.+.++|+|.+++--..
T Consensus        32 d~~~~a~~~~~~Gad~i~v~d~-~~~~~-~~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~-~~~~~~~~~Gad~V~lg~~~  107 (252)
T 1ka9_F           32 DPVEAARAYDEAGADELVFLDI-SATHE-ERAILLDVVARVAER-VFIPLTVGGGVRSL-EDARKLLLSGADKVSVNSAA  107 (252)
T ss_dssp             CHHHHHHHHHHHTCSCEEEEEC-CSSTT-CHHHHHHHHHHHHTT-CCSCEEEESSCCSH-HHHHHHHHHTCSEEEECHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcC-Ccccc-CccccHHHHHHHHHh-CCCCEEEECCcCCH-HHHHHHHHcCCCEEEEChHH
Confidence            5667788889999999887 33 22221 111234668999986 68888887666665 46777788899999433222


Q ss_pred             CCCCHHHHHHHHhhCC-----Ccccc---------------------hhhhhHHHHhcCCCeEEeec
Q psy11600         98 VDNVPQVIRQIKEAGM-----KVGQV---------------------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        98 ~d~g~~~i~~i~~~~~-----~~~d~---------------------p~~~i~~~~~~g~d~it~H~  138 (277)
                      .. .|..++.+++...     ..+++                     +.++++.+.++|++.+.+|.
T Consensus       108 l~-~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~  173 (252)
T 1ka9_F          108 VR-RPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTS  173 (252)
T ss_dssp             HH-CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred             Hh-CcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEec
Confidence            22 3455655544321     12222                     35677888889999999884

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=93.12  E-value=0.36  Score=44.61  Aligned_cols=117  Identities=18%  Similarity=0.205  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc----ccc-cC---------------CCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG----TFV-PN---------------LTFGHPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg----~fv-p~---------------~~~g~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      .+.+..+++.++|.|.+++..--|    +|. |+               ..|-.++++++|+....-++-+-|-..    
T Consensus       162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~  241 (365)
T 2gou_A          162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLN  241 (365)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTT
T ss_pred             HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccC
Confidence            455666677889999988765332    111 21               224457789999876422565533331    


Q ss_pred             -----Cc----HHhHHHHHhcCCCeEEEeccCCC----CCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcC-CCeEE
Q psy11600         75 -----NP----QQWIEPMADANVDQYTFHVEPVD----NVPQVIRQIKEAGMKVGQV-----LQDWIEPMADAN-VDQYT  135 (277)
Q Consensus        75 -----~p----~~~i~~l~~ag~d~i~~H~e~~d----~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g-~d~it  135 (277)
                           +.    .+.++.+.++|+|++++|.-..+    ....+++.+|+....|+-.     |++. ..+.+.| ||.|.
T Consensus       242 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~a-~~~l~~g~aD~V~  320 (365)
T 2gou_A          242 GTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRYNAEKA-EQAINDGLADMIG  320 (365)
T ss_dssp             SCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHH-HHHHHTTSCSEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCCCHHHH-HHHHHCCCcceeh
Confidence                 11    22377888999999988853221    1357788999987665432     5544 4445555 99888


Q ss_pred             e
Q psy11600        136 F  136 (277)
Q Consensus       136 ~  136 (277)
                      +
T Consensus       321 i  321 (365)
T 2gou_A          321 F  321 (365)
T ss_dssp             C
T ss_pred             h
Confidence            7

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=93.11  E-value=0.75  Score=40.45  Aligned_cols=170  Identities=10%  Similarity=0.122  Sum_probs=104.2

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCC--ChH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVD--NVP  145 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~--~~~  145 (277)
                      +|.+..+.+.++ +.-+.+--|..  .|+...++++|+.+..|+..     +...+.+...+|||.|.+-.-.-.  .+.
T Consensus        62 ~~~~iA~~y~~~-A~~IsVlTd~~~F~gs~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~l~~~~l~  140 (251)
T 1i4n_A           62 SLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIK  140 (251)
T ss_dssp             CHHHHHHHHHHH-CSEEEEECCCSSSCCCTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHH
T ss_pred             CHHHHHHHHHHh-CCceEEEecccccCCCHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence            566778888887 99998876653  45889999999998777643     445677799999999998764100  122


Q ss_pred             HHHHHHHHhCCccceeeCCCC-CHHhHHHHHhhcCceEEEEecC-CCCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCCC
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKT-PVDVIAEYIESADLVLIMTVEP-GFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVG  222 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t-~~~~i~~~i~~~d~vl~mav~P-gt~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV~  222 (277)
                      .+++..++.|+.    .-..+ ..+++...+...+.- ++.+|+ +.  +.|-.+ ++...++.+..|. .-+.--|||+
T Consensus       141 ~l~~~a~~lGl~----~lvEv~~~eE~~~A~~l~g~~-iIGinnr~l--~t~~~d-~~~~~~l~~~ip~~~~vIaEsGI~  212 (251)
T 1i4n_A          141 EIYEAAEELGMD----SLVEVHSREDLEKVFSVIRPK-IIGINTRDL--DTFEIK-KNVLWELLPLVPDDTVVVAESGIK  212 (251)
T ss_dssp             HHHHHHHTTTCE----EEEEECSHHHHHHHHTTCCCS-EEEEECBCT--TTCCBC-TTHHHHHGGGSCTTSEEEEESCCC
T ss_pred             HHHHHHHHcCCe----EEEEeCCHHHHHHHHhcCCCC-EEEEeCccc--ccCCCC-HHHHHHHHHhCCCCCEEEEeCCCC
Confidence            344444444433    22221 233444333320221 234454 32  122222 4445556555553 5555699996


Q ss_pred             -cCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        223 -PNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       223 -~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                       .+.+..+.++ ++.   |+.... ++..+.+++|..
T Consensus       213 t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~~l~~  248 (251)
T 1i4n_A          213 DPRELKDLRGK-VNAVLVGTSIMKAENPRRFLEEMRA  248 (251)
T ss_dssp             CGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHh
Confidence             8999999888 774   666665 477888877764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=93.11  E-value=0.66  Score=44.65  Aligned_cols=69  Identities=16%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      +..+.++.+.++|+|.+++|...|+.-    .-.+.++++|+.+|++++-+. .+.++ +..+.+.++|+|.+.+
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~g~~~----~~~~~i~~ir~~~p~~~Vi~g-~v~t~-e~a~~l~~aGaD~I~V  299 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSHGHSE----GVLQRIRETRAAYPHLEIIGG-NVATA-EGARALIEAGVSAVKV  299 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSCTTSH----HHHHHHHHHHHHCTTCCEEEE-EECSH-HHHHHHHHHTCSEEEE
T ss_pred             chHHHHHHHHhccCceEEeccccccch----HHHHHHHHHHHHCCCceEEEc-ccCcH-HHHHHHHHhCCCEEEE
Confidence            335667788889999999999876442    335889999999888887662 23333 5678899999999964

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=92.95  E-value=2.6  Score=36.67  Aligned_cols=34  Identities=12%  Similarity=-0.014  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHHhhC-CCCeEEEeCCCCccCHHHhh
Q psy11600        243 QDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       243 ~~~~~kI~~l~~~~-~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +-.++.++++++.. .++.+.+.||||++|+.++.
T Consensus       175 ~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~  209 (243)
T 3o63_A          175 APGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVL  209 (243)
T ss_dssp             CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHH
T ss_pred             hhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHH
Confidence            34577888887753 36779999999999998875

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=92.92  E-value=0.6  Score=43.11  Aligned_cols=214  Identities=14%  Similarity=0.095  Sum_probs=117.3

Q ss_pred             eeccccCcc-cHHHHHHHHHHcCCCEEEEe-----cccc-----------ccccCCCC---CH-HHHHHHHhc--CCCCe
Q psy11600         10 PSILNSDLS-NLHSESQNLLDSGADYLHLD-----VMDG-----------TFVPNLTF---GH-PVVKCLRNK--IPKAF   66 (277)
Q Consensus        10 ~s~~~~d~~-~l~~~~~~l~~~~~~~~h~D-----imDg-----------~fvp~~~~---g~-~~v~~l~~~--~~~~~   66 (277)
                      |=++++=+. .=.+.++.+...|.-.+=+=     =-.|           .+++.+.|   |. .+++.+++.  +++.|
T Consensus        49 Pv~lAAG~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~p  128 (354)
T 4ef8_A           49 PFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKP  128 (354)
T ss_dssp             SEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHHTCCTTTCC
T ss_pred             CCEeccCCCCCCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHHHHHHhhcCCCc
Confidence            444444444 34567777777776553110     0012           12333444   43 345556542  46788


Q ss_pred             eeeeeeccCcHHhHH---HHH---hcCCCeEEEeccCC--CC----------CHHHHHHHHhhCCCcccc---h------
Q psy11600         67 FETHMMVQNPQQWIE---PMA---DANVDQYTFHVEPV--DN----------VPQVIRQIKEAGMKVGQV---L------  119 (277)
Q Consensus        67 ~d~Hlmv~~p~~~i~---~l~---~ag~d~i~~H~e~~--d~----------g~~~i~~i~~~~~~~~d~---p------  119 (277)
                      +-+-++-.+|++|.+   .+.   ++|+|++.+.+-+-  .+          -.++++++|+.+..|+.+   |      
T Consensus       129 vivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~  208 (354)
T 4ef8_A          129 LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAH  208 (354)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHH
T ss_pred             EEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHH
Confidence            999998889998844   344   46899998776521  11          345788888888777654   2      


Q ss_pred             -hhhhHHHHhcC-CCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--CCCHHhHHHHHhhcCceEEEEecCCCCCchh
Q psy11600        120 -QDWIEPMADAN-VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--KTPVDVIAEYIESADLVLIMTVEPGFGGQKF  195 (277)
Q Consensus       120 -~~~i~~~~~~g-~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~  195 (277)
                       .+.++.+.++| +|.|+.+-    ++.            .|+.+..  .++.      +.....      .-|.+|...
T Consensus       209 ~~~~a~~~~~~Gg~d~I~~~N----T~~------------~g~~idi~~~~~~------~~~~~~------~gGlSG~~i  260 (354)
T 4ef8_A          209 FDAAAEILNEFPKVQFITCIN----SIG------------NGLVIDAETESVV------IKPKQG------FGGLGGRYV  260 (354)
T ss_dssp             HHHHHHHHHTCTTEEEEEECC----CEE------------EEECEETTTTEES------CSGGGG------EEEEEGGGG
T ss_pred             HHHHHHHHHhCCCccEEEEec----ccC------------cceeeeccCCccc------cccccc------cCCCCCCCC
Confidence             23344555777 88888652    110            0111110  0000      000000      012334334


Q ss_pred             hhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC---CCcccc--cCHHHHHHH
Q psy11600        196 MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF---GGQKFM--QDMMPKVKW  251 (277)
Q Consensus       196 ~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~---ggq~F~--~~~~~kI~~  251 (277)
                      -+-.++.+.++++..+++.+...|||. .+.+.++..+|++.   |...+.  +...++|++
T Consensus       261 ~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~  322 (354)
T 4ef8_A          261 LPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTS  322 (354)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHH
T ss_pred             chHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHH
Confidence            455567788888776689999999995 45555667778875   443332  556666653

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=92.67  E-value=0.38  Score=42.22  Aligned_cols=115  Identities=10%  Similarity=0.057  Sum_probs=69.8

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccC
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEP   97 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~   97 (277)
                      .+..+..+..++.|++++|+ +-|-.|.   .=....++.+|+. .++|+.+-=.+.++.+ +....++|||.+++-...
T Consensus        65 ~~p~~~A~~~~~~GA~~isv-lt~~~~f---~G~~~~l~~i~~~-v~lPvl~kdfI~d~~q-i~~a~~~GAD~VlL~~~~  138 (254)
T 1vc4_A           65 VDPVEAALAYARGGARAVSV-LTEPHRF---GGSLLDLKRVREA-VDLPLLRKDFVVDPFM-LEEARAFGASAALLIVAL  138 (254)
T ss_dssp             CCHHHHHHHHHHTTCSEEEE-ECCCSSS---CCCHHHHHHHHHH-CCSCEEEESCCCSHHH-HHHHHHTTCSEEEEEHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEE-ecchhhh---ccCHHHHHHHHHh-cCCCEEECCcCCCHHH-HHHHHHcCCCEEEECccc
Confidence            56778888889999999999 3332332   1256789999986 7899887777777764 677889999999443222


Q ss_pred             CC-CCHHHHHHHHhhCCCc-ccc-hhhhhHHHHhcCCCeEEeec
Q psy11600         98 VD-NVPQVIRQIKEAGMKV-GQV-LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        98 ~d-~g~~~i~~i~~~~~~~-~d~-p~~~i~~~~~~g~d~it~H~  138 (277)
                      .+ .-..+++..+..+..+ +++ -+.-+....++|++++.++.
T Consensus       139 l~~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~  182 (254)
T 1vc4_A          139 LGELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINN  182 (254)
T ss_dssp             HGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEES
T ss_pred             hHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEcc
Confidence            22 1122222222333322 112 11223455666777777764

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=92.66  E-value=1  Score=38.41  Aligned_cols=100  Identities=9%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      .++++...+.|+|++|        .|+  +.++.++.-++.  +.++-..  +.+|.+. ....++|+|++-+|....-+
T Consensus        78 ~d~~~~A~~aGAd~v~--------~p~--~d~~v~~~~~~~--g~~~i~G--~~t~~e~-~~A~~~Gad~v~~Fpa~~~g  142 (214)
T 1wbh_A           78 PQQLAEVTEAGAQFAI--------SPG--LTEPLLKAATEG--TIPLIPG--ISTVSEL-MLGMDYGLKEFKFFPAEANG  142 (214)
T ss_dssp             HHHHHHHHHHTCSCEE--------ESS--CCHHHHHHHHHS--SSCEEEE--ESSHHHH-HHHHHTTCCEEEETTTTTTT
T ss_pred             HHHHHHHHHcCCCEEE--------cCC--CCHHHHHHHHHh--CCCEEEe--cCCHHHH-HHHHHCCCCEEEEecCcccc
Confidence            4788888899999998        343  445666665653  4444444  5667664 55678899999997633335


Q ss_pred             CHHHHHHHHhhC-CCcccc----hhhhhHHHHhc-CCCeEE
Q psy11600        101 VPQVIRQIKEAG-MKVGQV----LQDWIEPMADA-NVDQYT  135 (277)
Q Consensus       101 g~~~i~~i~~~~-~~~~d~----p~~~i~~~~~~-g~d~it  135 (277)
                      |+..+++++... ..|+-.    -.+-++.+.++ |++.+.
T Consensus       143 G~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~  183 (214)
T 1wbh_A          143 GVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG  183 (214)
T ss_dssp             HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE
T ss_pred             CHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE
Confidence            799999998876 444422    23455556666 666665

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=92.56  E-value=0.75  Score=41.18  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=24.4

Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      .+++.+++-|||+++|++++.+.|+++
T Consensus       239 ~~~v~ieaSGGIt~~~i~~~a~tGVD~  265 (284)
T 1qpo_A          239 APTVMLESSGGLSLQTAATYAETGVDY  265 (284)
T ss_dssp             CTTCEEEEESSCCTTTHHHHHHTTCSE
T ss_pred             CCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence            456789999999999999999999997

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=92.54  E-value=2.9  Score=36.94  Aligned_cols=78  Identities=13%  Similarity=0.102  Sum_probs=49.9

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc---hhhhhHHHHhc--CCCeEE-eecCCCCC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV---LQDWIEPMADA--NVDQYT-FHVEPVDN  143 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~--g~d~it-~H~E~~~~  143 (277)
                      ...++.+++.+.|||+|-+-.+....     -.++|+.+++.+..|+.+   -.+.++.-.++  |+++|- +-.+   .
T Consensus        35 ~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~~Ga~iINdvs~~---~  111 (271)
T 2yci_X           35 PIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHRGHAMINSTSAD---Q  111 (271)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHCCSCCEEEEECSC---H
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhCCCCCEEEECCCC---c
Confidence            35556778889999999777666321     556778888776666544   34556666666  998885 6544   2


Q ss_pred             h--HHHHHHHHHhC
Q psy11600        144 V--PQVIRQIKEAG  155 (277)
Q Consensus       144 ~--~~~~~~I~~~g  155 (277)
                      -  +...+.+++.|
T Consensus       112 d~~~~~~~~~a~~~  125 (271)
T 2yci_X          112 WKMDIFFPMAKKYE  125 (271)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHcC
Confidence            1  34555555543

>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}

Probab=92.39  E-value=1.4  Score=40.66  Aligned_cols=68  Identities=22%  Similarity=0.344  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHH-----HHHHHHhcCCCCeeee--eeeccC----------------
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHP-----VVKCLRNKIPKAFFET--HMMVQN----------------   75 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~-----~v~~l~~~~~~~~~d~--Hlmv~~----------------   75 (277)
                      .+.++++.|.++|++++.+|=      |.++.+++     .++.++....+++...  |+=-.|                
T Consensus       172 a~~~ei~~l~~aG~~~IQiDe------P~l~~~~~~~~~~~v~~~n~~~~~~~~~~~iHiC~G~~~~~n~d~~~t~~~~~  245 (357)
T 3rpd_A          172 ILNEEAKELEAAGVDIIQFDE------PAFNVFFDEVNDWGIACLERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEW  245 (357)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEC------GGGGTCHHHHHHTHHHHHHHHHTTCCSEEEEEECSCCSSHHHHHHHTTSCSCC
T ss_pred             HHHHHHHHHHHcCCCEEEecC------ccccccHHHHHHHHHHHHHHHHhCCCCceEEEEecCCccCCcccccccccccc
Confidence            356888889999999999984      33333433     2445554444444444  654331                


Q ss_pred             --cHHhHHHHHhcCCCeEE
Q psy11600         76 --PQQWIEPMADANVDQYT   92 (277)
Q Consensus        76 --p~~~i~~l~~ag~d~i~   92 (277)
                        ....++.+.+.++|.++
T Consensus       246 g~y~~i~~~l~~~~~D~i~  264 (357)
T 3rpd_A          246 RQYEEVFPKLQKSNIDIIS  264 (357)
T ss_dssp             CGGGGTHHHHHHSSCCEEE
T ss_pred             CcHHHHHHHHHhCCCCEEE
Confidence              13346666667777773

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=92.36  E-value=0.46  Score=44.14  Aligned_cols=119  Identities=10%  Similarity=0.047  Sum_probs=73.3

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc----ccc-c---------------CCCCCHHHHHHHHhcCCCCeeeeeeeccC---
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG----TFV-P---------------NLTFGHPVVKCLRNKIPKAFFETHMMVQN---   75 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg----~fv-p---------------~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---   75 (277)
                      .+.+..++++++|.|.+++..--|    +|. |               ...|-.++++++|+....-++-+-|-..+   
T Consensus       167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~  246 (377)
T 2r14_A          167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF  246 (377)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred             HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC
Confidence            455666677889999977765432    111 1               22244678999998765226666553321   


Q ss_pred             ----------cHHhHHHHHhcCCCeEEEeccCCC----C-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEE
Q psy11600         76 ----------PQQWIEPMADANVDQYTFHVEPVD----N-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYT  135 (277)
Q Consensus        76 ----------p~~~i~~l~~ag~d~i~~H~e~~d----~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it  135 (277)
                                ..+.++.+.++|+|++++|.-...    + ...+++.+|+....|+-.     |++..+.+.+-+||.|.
T Consensus       247 ~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~  326 (377)
T 2r14_A          247 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVA  326 (377)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEe
Confidence                      223478888999999998853211    1 245688888887665422     55554444444499988


Q ss_pred             ee
Q psy11600        136 FH  137 (277)
Q Consensus       136 ~H  137 (277)
                      |=
T Consensus       327 ig  328 (377)
T 2r14_A          327 FG  328 (377)
T ss_dssp             ES
T ss_pred             ec
Confidence            83

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=92.34  E-value=0.59  Score=42.85  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CCeeeeeeeccCcHHh---HHHHHhcCCCeEEEeccCC------CC-----------CHHHHHHHHhhCCCcccc-----
Q psy11600         64 KAFFETHMMVQNPQQW---IEPMADANVDQYTFHVEPV------DN-----------VPQVIRQIKEAGMKVGQV-----  118 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~~---i~~l~~ag~d~i~~H~e~~------d~-----------g~~~i~~i~~~~~~~~d~-----  118 (277)
                      +.++-+.|+..+|+.+   .+.+.++|+|.|-+|.-.-      ++           ..++++++++....|+.+     
T Consensus        57 ~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g  136 (350)
T 3b0p_A           57 EHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG  136 (350)
T ss_dssp             GCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC
T ss_pred             CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC
Confidence            5789999998888876   4455678999999996421      11           345778888766555433     


Q ss_pred             ---------hhhhhHHHHhcCCCeEEeecC
Q psy11600        119 ---------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus       119 ---------p~~~i~~~~~~g~d~it~H~E  139 (277)
                               ..++++.+.++|+|.|++|.-
T Consensus       137 ~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r  166 (350)
T 3b0p_A          137 LEGKETYRGLAQSVEAMAEAGVKVFVVHAR  166 (350)
T ss_dssp             BTTCCCHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             cCccccHHHHHHHHHHHHHcCCCEEEEecC
Confidence                     245678888999999999853

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=92.29  E-value=2.5  Score=38.30  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=42.3

Q ss_pred             CCCeeeeeeeccCcHH---hHHHHHhcCCCeEEEeccCC-CCC----------------HHHHHHHHhhCCCcccc---h
Q psy11600         63 PKAFFETHMMVQNPQQ---WIEPMADANVDQYTFHVEPV-DNV----------------PQVIRQIKEAGMKVGQV---L  119 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~~---~i~~l~~ag~d~i~~H~e~~-d~g----------------~~~i~~i~~~~~~~~d~---p  119 (277)
                      |+-+.|   ...+++.   ..+++.+.|||+|=+=.|+. .|.                .++|+++++....|+.+   -
T Consensus        38 pDSFsd---~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~~  114 (314)
T 3tr9_A           38 PNSFYH---PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTSR  114 (314)
T ss_dssp             TTCSBC---BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECSC
T ss_pred             CCchhh---ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCCC
Confidence            566777   3334443   57777889999993333432 222                24667777766555544   3


Q ss_pred             hhhhHHHHhcCCCeEE
Q psy11600        120 QDWIEPMADANVDQYT  135 (277)
Q Consensus       120 ~~~i~~~~~~g~d~it  135 (277)
                      .+.++.-.++|+++|-
T Consensus       115 ~~Va~aAl~aGa~iIN  130 (314)
T 3tr9_A          115 PRVMREAVNTGADMIN  130 (314)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            4566666677888764

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=92.22  E-value=1.5  Score=39.77  Aligned_cols=108  Identities=14%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             HHHHHHHHcC--CCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--eccC
Q psy11600         22 SESQNLLDSG--ADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVEP   97 (277)
Q Consensus        22 ~~~~~l~~~~--~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e~   97 (277)
                      +..+.+.+.|  ++++++|..-|    +.....+.++++|+.++..++-.. .+.++ +..+.+.++|+|.|.+  |.-.
T Consensus       109 ~~a~~~~~~g~~~~~i~i~~~~G----~~~~~~~~i~~lr~~~~~~~vi~G-~v~s~-e~A~~a~~aGad~Ivvs~hgG~  182 (336)
T 1ypf_A          109 EFVQQLAAEHLTPEYITIDIAHG----HSNAVINMIQHIKKHLPESFVIAG-NVGTP-EAVRELENAGADATKVGIGPGK  182 (336)
T ss_dssp             HHHHHHHHTTCCCSEEEEECSSC----CSHHHHHHHHHHHHHCTTSEEEEE-EECSH-HHHHHHHHHTCSEEEECSSCST
T ss_pred             HHHHHHHhcCCCCCEEEEECCCC----CcHHHHHHHHHHHHhCCCCEEEEC-CcCCH-HHHHHHHHcCCCEEEEecCCCc
Confidence            4466777888  99988887433    122345789999998655555543 23444 5788899999999977  4321


Q ss_pred             -CC------C-----CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         98 -VD------N-----VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 -~d------~-----g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                       .+      .     ....+.++++....|+-.      +.+.++.++ +|||.+.+
T Consensus       183 ~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala-lGAdaV~i  238 (336)
T 1ypf_A          183 VCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR-FGATMVMI  238 (336)
T ss_dssp             TCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH-TTCSEEEE
T ss_pred             eeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH-cCCCEEEe
Confidence             00      0     145566666665444432      777777775 68887766

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=92.22  E-value=2  Score=39.03  Aligned_cols=64  Identities=8%  Similarity=0.005  Sum_probs=40.1

Q ss_pred             HHH-HHHHcCCCEEEEeccc-cccccCCCCCHHHHHHHHh------cCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         23 ESQ-NLLDSGADYLHLDVMD-GTFVPNLTFGHPVVKCLRN------KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        23 ~~~-~l~~~~~~~~h~DimD-g~fvp~~~~g~~~v~~l~~------~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      -++ .|.+.|+++     ++ |.|+.+ ....+.++++++      ..++..+.+.  +.+.. .++...++|++.+++-
T Consensus        46 i~~~~L~~~Gv~~-----IE~g~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~l--~~~~~-~i~~a~~~g~~~v~i~  116 (337)
T 3ble_A           46 IAKFLLQKLNVDR-----VEIASARVS-KGELETVQKIMEWAATEQLTERIEILGF--VDGNK-TVDWIKDSGAKVLNLL  116 (337)
T ss_dssp             HHHHHHHTTCCSE-----EEEEETTSC-TTHHHHHHHHHHHHHHTTCGGGEEEEEE--SSTTH-HHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHcCCCE-----EEEeCCCCC-hhHHHHHHHHHhhhhhhccCCCCeEEEE--ccchh-hHHHHHHCCCCEEEEE
Confidence            344 666777776     34 666531 112278999987      4555555543  33333 7888999999999654


Q ss_pred             c
Q psy11600         95 V   95 (277)
Q Consensus        95 ~   95 (277)
                      .
T Consensus       117 ~  117 (337)
T 3ble_A          117 T  117 (337)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=92.16  E-value=0.94  Score=39.53  Aligned_cols=172  Identities=16%  Similarity=0.222  Sum_probs=90.7

Q ss_pred             eeeeccCcHH-----hHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccchhhhh-HHHHhcCCCeEEee
Q psy11600         69 THMMVQNPQQ-----WIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQVLQDWI-EPMADANVDQYTFH  137 (277)
Q Consensus        69 ~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~p~~~i-~~~~~~g~d~it~H  137 (277)
                      .|++..+|..     .++.+.++|+|.+-+=.  ..|     ..++++++|+ +..|+-. .-|. ..+ .+|+|.+.+.
T Consensus        10 ~~i~~gDP~~~~t~~~~~~l~~~GaD~ielG~--S~Gvt~~~~~~~v~~ir~-~~~Pivl-m~y~~n~i-~~G~dg~iiP   84 (240)
T 1viz_A           10 KHVFKLDPNKDLPDEQLEILCESGTDAVIIGG--SDGVTEDNVLRMMSKVRR-FLVPCVL-EVSAIEAI-VPGFDLYFIP   84 (240)
T ss_dssp             CEEEEECTTSCCCHHHHHHHHTSCCSEEEECC------CHHHHHHHHHHHTT-SSSCEEE-ECSCGGGC-CSCCSEEEEE
T ss_pred             eEEEeeCCCccccHHHHHHHHHcCCCEEEECC--CCCCCHHHHHHHHHHhhC-cCCCEEE-ecCccccc-cCCCCEEEEc
Confidence            4667777644     57889999999884332  333     6677888887 5444432 1112 222 6788866654


Q ss_pred             cCCCCChHHH-----HHHHHHhC-----Cccce----eeCCCCC------------HHhHHHHHhhc-----CceEEEEe
Q psy11600        138 VEPVDNVPQV-----IRQIKEAG-----MKVGL----AIKPKTP------------VDVIAEYIESA-----DLVLIMTV  186 (277)
Q Consensus       138 ~E~~~~~~~~-----~~~I~~~g-----~~~g~----~i~p~t~------------~~~i~~~i~~~-----d~vl~mav  186 (277)
                      -=|.+.-...     ...+++.|     ...=-    -++|++.            .+.+..+....     +++-..+ 
T Consensus        85 dLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s-  163 (240)
T 1viz_A           85 SVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY-  163 (240)
T ss_dssp             EETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC-
T ss_pred             ccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeC-
Confidence            2111111222     35566544     22111    2344433            33444444333     4554444 


Q ss_pred             cCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc-cC-HHHHHHHHHh
Q psy11600        187 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM-QD-MMPKVKWLRE  254 (277)
Q Consensus       187 ~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~-~~-~~~kI~~l~~  254 (277)
                       -|+++      ..+.++++++...++-+.+=|||+- ++++++.+ |++.   |+.... ++ .+++++..++
T Consensus       164 -~G~~~------~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~~~~~~~~v~~~~~  229 (240)
T 1viz_A          164 -SGVLG------DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRALKTVAAVKG  229 (240)
T ss_dssp             -TTSCC------CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHHHHHTHHHHHHC
T ss_pred             -CCccC------hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhCHHHHHHHHHHHHh
Confidence             24432      3455666666654678999999974 56666666 7774   554443 23 4455555443

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=92.16  E-value=0.4  Score=43.03  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      .+++.+++-|||+++|+.++.+.|+++
T Consensus       238 ~~~v~ieASGGIt~eni~~~a~tGVD~  264 (285)
T 1o4u_A          238 NPNVIVEVSGGITEENVSLYDFETVDV  264 (285)
T ss_dssp             CTTSEEEEEECCCTTTGGGGCCTTCCE
T ss_pred             CCCceEEEECCCCHHHHHHHHHcCCCE
Confidence            345678999999999999999999997

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=92.16  E-value=0.98  Score=40.83  Aligned_cols=88  Identities=9%  Similarity=0.107  Sum_probs=53.5

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccC----CCCCHHHHHHHHhcCCCCeeeeeeecc-CcHHhHHHHHhcCCC
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN----LTFGHPVVKCLRNKIPKAFFETHMMVQ-NPQQWIEPMADANVD   89 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~----~~~g~~~v~~l~~~~~~~~~d~Hlmv~-~p~~~i~~l~~ag~d   89 (277)
                      .+...+.++++.+.+.|+..+++  ..|.. |.    ...=.++++.+++.+ ++  .+++-.. -..+.++.+.++|++
T Consensus        91 ls~eei~~~~~~~~~~G~~~i~l--~gGe~-p~~~~~~~~~~~l~~~ik~~~-~i--~i~~s~g~~~~e~l~~L~~aG~~  164 (350)
T 3t7v_A           91 LTMEEIKETCKTLKGAGFHMVDL--TMGED-PYYYEDPNRFVELVQIVKEEL-GL--PIMISPGLMDNATLLKAREKGAN  164 (350)
T ss_dssp             CCHHHHHHHHHHHTTSCCSEEEE--EECCC-HHHHHSTHHHHHHHHHHHHHH-CS--CEEEECSSCCHHHHHHHHHTTEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE--eeCCC-CccccCHHHHHHHHHHHHhhc-Cc--eEEEeCCCCCHHHHHHHHHcCCC
Confidence            34556667777777889998776  44442 22    111257788888653 33  3343332 245578999999999


Q ss_pred             eEEEeccCCCCCHHHHHHHHh
Q psy11600         90 QYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        90 ~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      .+.+-+|+.  .+.+.+.+++
T Consensus       165 ~i~i~lEt~--~~~~~~~i~~  183 (350)
T 3t7v_A          165 FLALYQETY--DTELYRKLRV  183 (350)
T ss_dssp             EEECCCBCS--CHHHHHHHST
T ss_pred             EEEEeeecC--CHHHHHHhCC
Confidence            985444443  4666666654

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=92.11  E-value=0.49  Score=40.83  Aligned_cols=99  Identities=9%  Similarity=0.017  Sum_probs=64.3

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCC
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNV  101 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g  101 (277)
                      ++++...+.|+|++|        .|+  +.++.++.-++.  +.++-..  +.+|.+ +....++|+|++-||....-+|
T Consensus        89 d~~~~A~~aGAd~v~--------~p~--~d~~v~~~~~~~--g~~~i~G--~~t~~e-~~~A~~~Gad~vk~FPa~~~~G  153 (225)
T 1mxs_A           89 SMFAAVEAAGAQFVV--------TPG--ITEDILEAGVDS--EIPLLPG--ISTPSE-IMMGYALGYRRFKLFPAEISGG  153 (225)
T ss_dssp             HHHHHHHHHTCSSEE--------CSS--CCHHHHHHHHHC--SSCEECE--ECSHHH-HHHHHTTTCCEEEETTHHHHTH
T ss_pred             HHHHHHHHCCCCEEE--------eCC--CCHHHHHHHHHh--CCCEEEe--eCCHHH-HHHHHHCCCCEEEEccCccccC
Confidence            678888889999998        354  445666665543  4444444  667855 5566789999998865222347


Q ss_pred             HHHHHHHHhhC-CCcccc----hhhhhHHHHh-cCCCeEE
Q psy11600        102 PQVIRQIKEAG-MKVGQV----LQDWIEPMAD-ANVDQYT  135 (277)
Q Consensus       102 ~~~i~~i~~~~-~~~~d~----p~~~i~~~~~-~g~d~it  135 (277)
                      +..+++++... ..|+-.    -.+-++++.+ .|++.+.
T Consensus       154 ~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~  193 (225)
T 1mxs_A          154 VAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG  193 (225)
T ss_dssp             HHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE
T ss_pred             HHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE
Confidence            88999998865 444422    2334555555 5777776

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=92.10  E-value=0.78  Score=41.73  Aligned_cols=117  Identities=11%  Similarity=0.141  Sum_probs=74.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc----cc-ccC---------------CCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG----TF-VPN---------------LTFGHPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg----~f-vp~---------------~~~g~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      .+.+..+++.++|.|.+-+..--|    +| .|+               ..|-.++++++|+.. +.++-+-|-..    
T Consensus       145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~  223 (338)
T 1z41_A          145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD  223 (338)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred             HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC
Confidence            455667778889999944433222    11 132               123378899999986 77777776542    


Q ss_pred             ------CcHHhHHHHHhcCCCeEEEeccCC-----C-C---CHHHHHHHHhhCCCcccc------hhhhhHHHHhcC-CC
Q psy11600         75 ------NPQQWIEPMADANVDQYTFHVEPV-----D-N---VPQVIRQIKEAGMKVGQV------LQDWIEPMADAN-VD  132 (277)
Q Consensus        75 ------~p~~~i~~l~~ag~d~i~~H~e~~-----d-~---g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g-~d  132 (277)
                            +..+.++.+.++|+|++++|.-..     . +   ...+++.+|+....|+-.      |++ ++.+.+.| ||
T Consensus       224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~-a~~~l~~G~aD  302 (338)
T 1z41_A          224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSM-AEEILQNGRAD  302 (338)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHH-HHHHHHTTSCS
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHH-HHHHHHcCCce
Confidence                  234467888899999998874210     1 1   357888999887665533      444 44555566 99


Q ss_pred             eEEee
Q psy11600        133 QYTFH  137 (277)
Q Consensus       133 ~it~H  137 (277)
                      .|.|=
T Consensus       303 ~V~iG  307 (338)
T 1z41_A          303 LIFIG  307 (338)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            98883

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=92.09  E-value=2.7  Score=38.12  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=58.0

Q ss_pred             HHHHHHhcCCCCeeeeeeec-cCcHHhHHHHHhcCCCeEEEeccCCC------------CCHHHHHHHHhhCCCcccc--
Q psy11600         54 VVKCLRNKIPKAFFETHMMV-QNPQQWIEPMADANVDQYTFHVEPVD------------NVPQVIRQIKEAGMKVGQV--  118 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv-~~p~~~i~~l~~ag~d~i~~H~e~~d------------~g~~~i~~i~~~~~~~~d~--  118 (277)
                      +.+-+++.-++.|+-+.+.. .++....+.+..+|+|.+.+|.....            +-.+.|+++|+....|+-+  
T Consensus       106 ~~~~~~~~~~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~  185 (349)
T 1p0k_A          106 SYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKE  185 (349)
T ss_dssp             HHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEE
T ss_pred             ceehhhhhCCCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEe
Confidence            33434544468888888873 46666666777889999999987421            1246788998877665432  


Q ss_pred             -----hhhhhHHHHhcCCCeEEe
Q psy11600        119 -----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 -----p~~~i~~~~~~g~d~it~  136 (277)
                           -.+.+..+.++|+|.|++
T Consensus       186 ~~~~~~~~~a~~a~~~Gad~I~v  208 (349)
T 1p0k_A          186 VGFGMSKASAGKLYEAGAAAVDI  208 (349)
T ss_dssp             ESSCCCHHHHHHHHHHTCSEEEE
T ss_pred             cCCCCCHHHHHHHHHcCCCEEEE
Confidence                 245678889999999998

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=92.08  E-value=1  Score=38.68  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      .++++...+.|+|++|.        |+  +.++.++.-|+.  +.++-+.  +.+|.+. ....+.|+|++-|+....-+
T Consensus        79 ~d~~~~A~~aGAd~v~~--------p~--~d~~v~~~ar~~--g~~~i~G--v~t~~e~-~~A~~~Gad~vk~Fpa~~~g  143 (224)
T 1vhc_A           79 AEQVVLAKSSGADFVVT--------PG--LNPKIVKLCQDL--NFPITPG--VNNPMAI-EIALEMGISAVKFFPAEASG  143 (224)
T ss_dssp             HHHHHHHHHHTCSEEEC--------SS--CCHHHHHHHHHT--TCCEECE--ECSHHHH-HHHHHTTCCEEEETTTTTTT
T ss_pred             HHHHHHHHHCCCCEEEE--------CC--CCHHHHHHHHHh--CCCEEec--cCCHHHH-HHHHHCCCCEEEEeeCcccc
Confidence            47888888899999863        43  446677777763  3444444  5677664 55678899999997632335


Q ss_pred             CHHHHHHHHhhC-CCcccc----hhhhhHHHHhc-CCCeEE
Q psy11600        101 VPQVIRQIKEAG-MKVGQV----LQDWIEPMADA-NVDQYT  135 (277)
Q Consensus       101 g~~~i~~i~~~~-~~~~d~----p~~~i~~~~~~-g~d~it  135 (277)
                      |+..+++++... ..|+-.    -.+-++++.++ |++.+.
T Consensus       144 G~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~  184 (224)
T 1vhc_A          144 GVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG  184 (224)
T ss_dssp             HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE
T ss_pred             CHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE
Confidence            799999999876 445432    23445555555 666655

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=91.99  E-value=0.38  Score=43.40  Aligned_cols=126  Identities=14%  Similarity=0.212  Sum_probs=81.1

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEecccc-------------ccccCCCCCHHHHHHHHhcCCCCeeeeeeec
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG-------------TFVPNLTFGHPVVKCLRNKIPKAFFETHMMV   73 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg-------------~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv   73 (277)
                      .+...|+..|...+.+..+++++. .|.  +||-=|             .+..+..|-.++++++|+. .+.|+.+-+-.
T Consensus        60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~--Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKir~  135 (318)
T 1vhn_A           60 NVAVQIFGSEPNELSEAARILSEK-YKW--IDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS-VSGKFSVKTRL  135 (318)
T ss_dssp             TEEEEEECSCHHHHHHHHHHHTTT-CSE--EEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHH-CSSEEEEEEES
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHh-CCE--EEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHh-hCCCEEEEecC
Confidence            466677766778888888888887 887  555311             1222333445778899987 45777766533


Q ss_pred             ----cCcHHhHHHHHhcCCCeEEEeccCC-C---C--CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEee
Q psy11600         74 ----QNPQQWIEPMADANVDQYTFHVEPV-D---N--VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        74 ----~~p~~~i~~l~~ag~d~i~~H~e~~-d---~--g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                          .+..+.++.+.++|+|++++|--.. +   +  ..+.++++++  ..|+-.      +++..+.+.+.|||.|.+-
T Consensus       136 G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iG  213 (318)
T 1vhn_A          136 GWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVA  213 (318)
T ss_dssp             CSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred             CCChHHHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEEC
Confidence                2344679999999999999994321 1   1  2234555555  333321      7777777777889888875


Q ss_pred             c
Q psy11600        138 V  138 (277)
Q Consensus       138 ~  138 (277)
                      -
T Consensus       214 R  214 (318)
T 1vhn_A          214 R  214 (318)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=91.76  E-value=0.66  Score=41.90  Aligned_cols=27  Identities=26%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             CCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        210 YPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       210 ~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      .+++.+++-|||+++|+.++.+.|+++
T Consensus       251 ~~~v~ieaSGGI~~~~i~~~a~tGVD~  277 (298)
T 3gnn_A          251 EGRAVLEVSGGVNFDTVRAIAETGVDR  277 (298)
T ss_dssp             TTSEEEEEESSCSTTTHHHHHHTTCSE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHcCCCE
Confidence            356789999999999999999999996

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=91.59  E-value=0.23  Score=44.19  Aligned_cols=74  Identities=18%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             hhhHHHHHhhCCC-ccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHH
Q psy11600        200 MPKVKWLRENYPT-LNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       200 l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~  273 (277)
                      .+-++.+++..+. ..+.+    ...|.++   ..++|+++ .-..|.++.++++. .++...|+..|++-||||++|++
T Consensus       169 ~~ai~~~r~~~~~~~~i~v----ev~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~  244 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEI----ECESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDAHYPFVLLEASGNISLESIN  244 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEE----EESSHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHH
T ss_pred             HHHHHHHHHhCCCCceEEE----EcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCcEEEEECCCCHHHHH
Confidence            4557777777764 34443    3445444   45678886 22335555454433 34445678899999999999999


Q ss_pred             HhhC
Q psy11600        274 ECAK  277 (277)
Q Consensus       274 ~~~~  277 (277)
                      .+++
T Consensus       245 ~~~~  248 (273)
T 2b7n_A          245 AYAK  248 (273)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8764

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=91.54  E-value=0.38  Score=43.73  Aligned_cols=94  Identities=15%  Similarity=0.065  Sum_probs=68.8

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEecccc--ccccCCCCCHHHHHHHHhc--CCCCeeeeeeeccCcHHhHHH-HH
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDG--TFVPNLTFGHPVVKCLRNK--IPKAFFETHMMVQNPQQWIEP-MA   84 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg--~fvp~~~~g~~~v~~l~~~--~~~~~~d~Hlmv~~p~~~i~~-l~   84 (277)
                      +=++++|..+.++.++.+++.+ ++  +++.--  .|.  ..||++.+++|++.  .+++++-.+++..|..+.+.. +.
T Consensus        85 ~LiVALD~~~~~~al~l~~~l~-~~--v~~vKvG~~l~--~~~G~~~v~~L~~~a~~~g~~IflDlK~~DIpnTv~~a~~  159 (312)
T 3g3d_A           85 NLCLSADVSLARELLQLADALG-PS--ICMLKTHVDIL--NDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYE  159 (312)
T ss_dssp             CEEEECCCSCHHHHHHHHHHHG-GG--CSEEEECGGGC--TTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHhC-CC--ceEEEEcHHHH--HHhCHHHHHHHHHHHhhCCCEEEEECcccccHHHHHHHHH
Confidence            3467889999999998888763 33  455552  233  35899999999862  258899999999999888764 32


Q ss_pred             ------hcCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         85 ------DANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        85 ------~ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                            ..++|++|+|.   -+|...+++.++.
T Consensus       160 ~a~~~~a~~aD~vTVHa---~~G~~~m~aa~e~  189 (312)
T 3g3d_A          160 GGIFKIASWADLVNAHV---VPGSGVVKGLQEV  189 (312)
T ss_dssp             CTTTCHHHHCSEEEEES---TTCTHHHHHHHHH
T ss_pred             HHHHhhhccCCEEEEcc---CCCHHHHHHHHHh
Confidence                  13699999995   4567788877664

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=91.37  E-value=0.83  Score=39.13  Aligned_cols=64  Identities=6%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCC-CCCHHHHHHHHh-hCCC------cccch---hhhhHHHHhcCCCeEEeecC
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPV-DNVPQVIRQIKE-AGMK------VGQVL---QDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~-d~g~~~i~~i~~-~~~~------~~d~p---~~~i~~~~~~g~d~it~H~E  139 (277)
                      ....+.++++.. .++++=++.+.. ..|+..++.+++ ....      .+|.|   ..+.+.+.+. +|++|+|.-
T Consensus        11 ~~al~l~~~l~~-~v~~~KvG~~l~~~~G~~~v~~L~~~~g~~VflDlK~~DIpnTv~~a~~~~~~~-ad~vTvh~~   85 (215)
T 3ve9_A           11 PIPEETLRKLNG-KVAGIKVGWPLLLNLGKEKVKELVGLVDGIKILDLKLADIDNTMILIVDELKDI-TNSFIAHAF   85 (215)
T ss_dssp             CCCHHHHHHHHT-TSSEEEEEHHHHHHHCHHHHHHHHTTCCSEEEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEGG
T ss_pred             HHHHHHHHHhCC-cCcEEEecHHHHHhhCHHHHHHHHHhcCCcEEEEecccCchhHHHHHHHHHHHh-hheEEEeCC
Confidence            666777777754 467887787653 459999999998 3322      23556   4466888999 999999975

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=91.35  E-value=0.85  Score=41.73  Aligned_cols=117  Identities=13%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccc----cc-cCC-----CCC----------HHHHHHHHhcCC-CCeeeeeeecc----
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGT----FV-PNL-----TFG----------HPVVKCLRNKIP-KAFFETHMMVQ----   74 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~----fv-p~~-----~~g----------~~~v~~l~~~~~-~~~~d~Hlmv~----   74 (277)
                      +.+..++++++|.|.+-+..--|-    |. |+.     .||          .++++++|+..+ +.++-+-|-..    
T Consensus       154 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~  233 (349)
T 3hgj_A          154 FVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGE  233 (349)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCST
T ss_pred             HHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccC
Confidence            445556678899999444443321    11 221     133          689999999864 66666655432    


Q ss_pred             ------CcHHhHHHHHhcCCCeEEEecc---CC------C-CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcC-C
Q psy11600         75 ------NPQQWIEPMADANVDQYTFHVE---PV------D-NVPQVIRQIKEAGMKVGQV------LQDWIEPMADAN-V  131 (277)
Q Consensus        75 ------~p~~~i~~l~~ag~d~i~~H~e---~~------d-~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g-~  131 (277)
                            +..+.++.+.++|+|++++|.-   ..      . ....+++.+|+....|+-.      |+ -++.+.+.| |
T Consensus       234 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e-~a~~~l~~G~a  312 (349)
T 3hgj_A          234 GGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPE-QAETLLQAGSA  312 (349)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHH-HHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHH-HHHHHHHCCCc
Confidence                  2334578888999999988841   10      1 1456788888876655432      43 345555666 8


Q ss_pred             CeEEee
Q psy11600        132 DQYTFH  137 (277)
Q Consensus       132 d~it~H  137 (277)
                      |.|.|=
T Consensus       313 D~V~iG  318 (349)
T 3hgj_A          313 DLVLLG  318 (349)
T ss_dssp             SEEEES
T ss_pred             eEEEec
Confidence            988884

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=91.18  E-value=0.24  Score=44.44  Aligned_cols=73  Identities=21%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             hhHHHHHhhCC--CccEEEeCCCCcCcHHHHHHccCCC-CCcccccCHHH-HHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        201 PKVKWLRENYP--TLNIEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMP-KVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       201 ~kI~~l~~~~~--~~~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~-kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +-++.++++.+  .+.++++   +.+-+.+..++|+++ ---.|.++.++ -++.++...++..|++-||||++|++.++
T Consensus       183 ~av~~ar~~~~~~~I~Vev~---t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a  259 (284)
T 1qpo_A          183 DALRAVRNAAPDLPCEVEVD---SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYA  259 (284)
T ss_dssp             HHHHHHHHHCTTSCEEEEES---SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEeC---CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHH
Confidence            34666777777  3444443   334444456677775 22334444333 34445555567899999999999999875

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=90.89  E-value=3.7  Score=34.81  Aligned_cols=52  Identities=15%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHH
Q psy11600          4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR   59 (277)
Q Consensus         4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~   59 (277)
                      .+++|+-|.++.-...+++.++.+.+.|.+.  +.+...++ | ..+.+..++++|
T Consensus        16 ~~~klg~~~~~~~~~~~~~~l~~~~~~G~~~--vEl~~~~~-~-~~~~~~~~~~~~   67 (257)
T 3lmz_A           16 NPFHLGMAGYTFVNFDLDTTLKTLERLDIHY--LCIKDFHL-P-LNSTDEQIRAFH   67 (257)
T ss_dssp             CSSEEEECGGGGTTSCHHHHHHHHHHTTCCE--EEECTTTS-C-TTCCHHHHHHHH
T ss_pred             CceEEEEEEEeecCCCHHHHHHHHHHhCCCE--EEEecccC-C-CCCCHHHHHHHH
Confidence            3578888888888789999999999999999  55554443 2 234454444444

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=90.88  E-value=0.94  Score=40.89  Aligned_cols=125  Identities=13%  Similarity=0.092  Sum_probs=74.7

Q ss_pred             eEeeeccccC-------cccHHHHHHHHHHcCCCEEEEeccccccccCC---------CCCHHHHHHHHhcC--------
Q psy11600          7 MIGPSILNSD-------LSNLHSESQNLLDSGADYLHLDVMDGTFVPNL---------TFGHPVVKCLRNKI--------   62 (277)
Q Consensus         7 ~~~~s~~~~d-------~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~---------~~g~~~v~~l~~~~--------   62 (277)
                      .+++|+...+       ..++.+..+++.+ |+|.+-+.+.    .||.         .+-.++++++|+..        
T Consensus       135 ~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~----sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g  209 (336)
T 1f76_A          135 VLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINIS----SPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHH  209 (336)
T ss_dssp             EEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECC----CSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEcc----CCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccc
Confidence            4677877655       4456666666655 7787433321    3432         12247888888763        


Q ss_pred             CCCeeeeeeecc----CcHHhHHHHHhcCCCeEEEeccC-------------CCC---C-------HHHHHHHHhhC--C
Q psy11600         63 PKAFFETHMMVQ----NPQQWIEPMADANVDQYTFHVEP-------------VDN---V-------PQVIRQIKEAG--M  113 (277)
Q Consensus        63 ~~~~~d~Hlmv~----~p~~~i~~l~~ag~d~i~~H~e~-------------~d~---g-------~~~i~~i~~~~--~  113 (277)
                      +++|+-+=+-..    +..+..+.+.++|+|.|++|--.             ..+   |       ...++++++..  .
T Consensus       210 ~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~  289 (336)
T 1f76_A          210 KYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGR  289 (336)
T ss_dssp             SCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTS
T ss_pred             ccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCC
Confidence            267877754322    12334788889999999887321             011   2       25677777765  4


Q ss_pred             Ccccc------hhhhhHHHHhcCCCeEEee
Q psy11600        114 KVGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       114 ~~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      .|+-.      +++..+.+. +|||.|.+-
T Consensus       290 ipVi~~GGI~~~~da~~~l~-~GAd~V~ig  318 (336)
T 1f76_A          290 LPIIGVGGIDSVIAAREKIA-AGASLVQIY  318 (336)
T ss_dssp             SCEEEESSCCSHHHHHHHHH-HTCSEEEES
T ss_pred             CCEEEECCCCCHHHHHHHHH-CCCCEEEee
Confidence            44422      666666654 789988773

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=90.81  E-value=2.3  Score=41.04  Aligned_cols=119  Identities=17%  Similarity=0.103  Sum_probs=75.8

Q ss_pred             ccCcccHHHHHHHHHHcCCCE--EEEec---------ccccc------------------------c---cCCCCCHHHH
Q psy11600         14 NSDLSNLHSESQNLLDSGADY--LHLDV---------MDGTF------------------------V---PNLTFGHPVV   55 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~--~h~Di---------mDg~f------------------------v---p~~~~g~~~v   55 (277)
                      ..|..-+.+.++++++.|++.  +|+|.         +-..|                        +   .+-.+..+.|
T Consensus       256 ~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i  335 (511)
T 1kbi_A          256 NSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDI  335 (511)
T ss_dssp             CSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHH
Confidence            556677888899999999995  67772         10000                        0   0112456889


Q ss_pred             HHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE--eccC-CCC---CHHHHHHHHhhC-------CCcccc----
Q psy11600         56 KCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF--HVEP-VDN---VPQVIRQIKEAG-------MKVGQV----  118 (277)
Q Consensus        56 ~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~--H~e~-~d~---g~~~i~~i~~~~-------~~~~d~----  118 (277)
                      +++|+. +++|+-+-. +.++ +....+.++|+|.|++  |--. .++   ....+.++++..       ..++-.    
T Consensus       336 ~~lr~~-~~~PvivKg-v~~~-e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI  412 (511)
T 1kbi_A          336 EELKKK-TKLPIVIKG-VQRT-EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV  412 (511)
T ss_dssp             HHHHHH-CSSCEEEEE-ECSH-HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSC
T ss_pred             HHHHHH-hCCcEEEEe-CCCH-HHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCC
Confidence            999986 688888763 3454 5578889999999988  4221 122   223444444432       223322    


Q ss_pred             --hhhhhHHHHhcCCCeEEe
Q psy11600        119 --LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 --p~~~i~~~~~~g~d~it~  136 (277)
                        +.+.++.++ +|||.|.+
T Consensus       413 ~~g~Dv~kaLa-lGAdaV~i  431 (511)
T 1kbi_A          413 RRGTDVLKALC-LGAKGVGL  431 (511)
T ss_dssp             CSHHHHHHHHH-HTCSEEEE
T ss_pred             CCHHHHHHHHH-cCCCEEEE
Confidence              788888887 79998887

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=90.76  E-value=0.76  Score=41.25  Aligned_cols=79  Identities=15%  Similarity=0.054  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIEP  125 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~~  125 (277)
                      ...++..|+..|..++.|  -|.++ ++++...++|+|+|  -+|.+  .+..++++.+..  ...+.+    -.+-+..
T Consensus       186 ~~Av~~ar~~~~~~~IeV--Ev~tl-~ea~eAl~aGaD~I--~LDn~--~~~~l~~av~~~~~~v~ieaSGGIt~~~i~~  258 (287)
T 3tqv_A          186 AKAVTKAKKLDSNKVVEV--EVTNL-DELNQAIAAKADIV--MLDNF--SGEDIDIAVSIARGKVALEVSGNIDRNSIVA  258 (287)
T ss_dssp             HHHHHHHHHHCTTSCEEE--EESSH-HHHHHHHHTTCSEE--EEESC--CHHHHHHHHHHHTTTCEEEEESSCCTTTHHH
T ss_pred             HHHHHHHHhhCCCCcEEE--EeCCH-HHHHHHHHcCCCEE--EEcCC--CHHHHHHHHHhhcCCceEEEECCCCHHHHHH
Confidence            367888888767777776  67777 56667778999999  55544  466666655543  223333    6778899


Q ss_pred             HHhcCCCeEEee
Q psy11600        126 MADANVDQYTFH  137 (277)
Q Consensus       126 ~~~~g~d~it~H  137 (277)
                      +++.|+|+|++-
T Consensus       259 ~a~tGVD~IsvG  270 (287)
T 3tqv_A          259 IAKTGVDFISVG  270 (287)
T ss_dssp             HHTTTCSEEECS
T ss_pred             HHHcCCCEEEEC
Confidence            999999999983

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=90.54  E-value=4.6  Score=34.70  Aligned_cols=107  Identities=9%  Similarity=-0.022  Sum_probs=72.1

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee---------eeccCcHHhHHHHHhcC
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH---------MMVQNPQQWIEPMADAN   87 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H---------lmv~~p~~~i~~l~~ag   87 (277)
                      .....+-.+.+++.|+..+-+            =+++.++++|+. +++|+-.-         +++..-.++++.+.++|
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~------------~~~~~i~~ir~~-v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~G  101 (232)
T 3igs_A           35 PEIVAAMALAAEQAGAVAVRI------------EGIDNLRMTRSL-VSVPIIGIIKRDLDESPVRITPFLDDVDALAQAG  101 (232)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE------------ESHHHHHHHHTT-CCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHCCCeEEEE------------CCHHHHHHHHHh-cCCCEEEEEeecCCCcceEeCccHHHHHHHHHcC
Confidence            445667777788899998654            147889999986 88887310         23333345788899999


Q ss_pred             CCeEEEeccCC---CCCHHHHHHHHhhCCC-cccc-hhhhhHHHHhcCCCeEEe
Q psy11600         88 VDQYTFHVEPV---DNVPQVIRQIKEAGMK-VGQV-LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        88 ~d~i~~H~e~~---d~g~~~i~~i~~~~~~-~~d~-p~~~i~~~~~~g~d~it~  136 (277)
                      +|.+.+..-..   ..-.++++.+++.... ..++ ..+.+....++|+|+|.+
T Consensus       102 ad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~  155 (232)
T 3igs_A          102 AAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGT  155 (232)
T ss_dssp             CSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEEC
T ss_pred             CCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEE
Confidence            99995432211   1245677888776443 2233 566778888999999964

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=90.35  E-value=1.5  Score=40.59  Aligned_cols=114  Identities=16%  Similarity=0.134  Sum_probs=71.6

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE   96 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e   96 (277)
                      .....+.++++.+.|+|.+-+|.--|...    .-.+.++++|+.+|++++-+- -+..++ ..+.+.++|+|.|.+=..
T Consensus        98 ~~~~~e~~~~a~~aGvdvI~id~a~G~~~----~~~e~I~~ir~~~~~~~Vi~G-~V~T~e-~A~~a~~aGaD~I~Vg~g  171 (361)
T 3r2g_A           98 TENELQRAEALRDAGADFFCVDVAHAHAK----YVGKTLKSLRQLLGSRCIMAG-NVATYA-GADYLASCGADIIKAGIG  171 (361)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEECSCCSSH----HHHHHHHHHHHHHTTCEEEEE-EECSHH-HHHHHHHTTCSEEEECCS
T ss_pred             CHHHHHHHHHHHHcCCCEEEEeCCCCCcH----hHHHHHHHHHHhcCCCeEEEc-CcCCHH-HHHHHHHcCCCEEEEcCC
Confidence            34556788999999999998887665311    114689999998778777762 134554 567889999999965211


Q ss_pred             CCC--------C-CHHHHHHHHhhCCC--cccc------hhhhhHHHHhcCCCeEEee
Q psy11600         97 PVD--------N-VPQVIRQIKEAGMK--VGQV------LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        97 ~~d--------~-g~~~i~~i~~~~~~--~~d~------p~~~i~~~~~~g~d~it~H  137 (277)
                      ...        + +...+..+++....  |+-.      +.+..+.++ +|||.+.+-
T Consensus       172 ~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~~~~di~kALa-~GAd~V~iG  228 (361)
T 3r2g_A          172 GGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKALA-FGADFVMIG  228 (361)
T ss_dssp             SSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEEEESCCCSHHHHHHHHH-TTCSEEEES
T ss_pred             CCcCccccccCCccHHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCCEEEEC
Confidence            100        0 11245555554432  3322      666666655 788887763

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=90.22  E-value=0.77  Score=38.82  Aligned_cols=116  Identities=12%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             ccccCcccHHHHHHHHHHcCCC-EEEEeccccccccCCCCCHHHHHHHHhc-CCCCeeeee-----------------ee
Q psy11600         12 ILNSDLSNLHSESQNLLDSGAD-YLHLDVMDGTFVPNLTFGHPVVKCLRNK-IPKAFFETH-----------------MM   72 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~-~~h~DimDg~fvp~~~~g~~~v~~l~~~-~~~~~~d~H-----------------lm   72 (277)
                      ++..|..++.+.++++.+.|=. .+|+|..+|-     +-....+..|++. -|+--+..+                 +.
T Consensus        35 ll~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gl-----s~d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~F  109 (192)
T 3kts_A           35 MLETHVAQLKALVKYAQAGGKKVLLHADLVNGL-----KNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLF  109 (192)
T ss_dssp             ECSEETTTHHHHHHHHHHTTCEEEEEGGGEETC-----CCSHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEEEEE
T ss_pred             EecCcHHHHHHHHHHHHHcCCeEEEecCchhcc-----CCcHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEEEEE
Confidence            4667889999999999988643 3799998872     2223334444431 133222222                 22


Q ss_pred             ccCc---HHhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600         73 VQNP---QQWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        73 v~~p---~~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~  136 (277)
                      +-|-   ..-++.+.+...|.+    |.+.| .|++|+++++.+..|+-+     -.+-+....++||+.||-
T Consensus       110 liDS~al~~~~~~i~~~~PD~i----EiLPGi~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT  178 (192)
T 3kts_A          110 MIDSSAYNKGVALIQKVQPDCI----ELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT  178 (192)
T ss_dssp             CCSHHHHHHHHHHHHHHCCSEE----EEECTTCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred             EEEcchHHHHHHHHhhcCCCEE----EECCchhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence            2232   234666666677766    55555 688999999988777755     466677778889988886

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=90.12  E-value=3.6  Score=35.32  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=72.7

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeee---------eeccCcHHhHHHHHhcC
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETH---------MMVQNPQQWIEPMADAN   87 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~H---------lmv~~p~~~i~~l~~ag   87 (277)
                      ...+.+..+.+++.|+..+-+            =+++.++++|+. +++|+-.-         +++..-.++++.+.++|
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~------------~~~~~i~~ir~~-v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aG  101 (229)
T 3q58_A           35 PEIVAAMAQAAASAGAVAVRI------------EGIENLRTVRPH-LSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAG  101 (229)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE------------ESHHHHHHHGGG-CCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHCCCcEEEE------------CCHHHHHHHHHh-cCCCEEEEEeecCCCCceEeCccHHHHHHHHHcC
Confidence            445667777788999999654            157889999986 88886421         23333345788899999


Q ss_pred             CCeEEEeccCC---CCCHHHHHHHHhhCCC-cccc-hhhhhHHHHhcCCCeEEe
Q psy11600         88 VDQYTFHVEPV---DNVPQVIRQIKEAGMK-VGQV-LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        88 ~d~i~~H~e~~---d~g~~~i~~i~~~~~~-~~d~-p~~~i~~~~~~g~d~it~  136 (277)
                      +|.+.+..-..   ..-.++++.+++.... ..++ ..+......++|+|+|.+
T Consensus       102 ad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~  155 (229)
T 3q58_A          102 ADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGT  155 (229)
T ss_dssp             CSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred             CCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEe
Confidence            99994432211   1245778888876443 2233 566778888999999964

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=90.12  E-value=3.4  Score=38.06  Aligned_cols=118  Identities=9%  Similarity=-0.001  Sum_probs=75.8

Q ss_pred             cCcccHHHHHHHHHHcCCCEE--EEecc---------cccc-cc--------------------------CCCCCHHHHH
Q psy11600         15 SDLSNLHSESQNLLDSGADYL--HLDVM---------DGTF-VP--------------------------NLTFGHPVVK   56 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~--h~Dim---------Dg~f-vp--------------------------~~~~g~~~v~   56 (277)
                      .|.....+.++++++.|++.+  |+|.-         ...| .|                          +-.+..+.|+
T Consensus       143 ~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~  222 (368)
T 2nli_A          143 KDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIE  222 (368)
T ss_dssp             SSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHH
Confidence            466677788999999998864  55520         0011 11                          2345678899


Q ss_pred             HHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec--c-CCCCC---HHHHHHHHhhC--CCcccc------hhhh
Q psy11600         57 CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV--E-PVDNV---PQVIRQIKEAG--MKVGQV------LQDW  122 (277)
Q Consensus        57 ~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~--e-~~d~g---~~~i~~i~~~~--~~~~d~------p~~~  122 (277)
                      ++|+. +++|+-+-. +. ..+..+.+.++|+|.|.++-  - ..+++   ...+.++++..  ..++-.      +.+.
T Consensus       223 ~lr~~-~~~PvivK~-v~-~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~  299 (368)
T 2nli_A          223 EIAGH-SGLPVFVKG-IQ-HPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHV  299 (368)
T ss_dssp             HHHHH-SSSCEEEEE-EC-SHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHH
T ss_pred             HHHHH-cCCCEEEEc-CC-CHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHH
Confidence            99986 678887763 33 34567889999999998832  1 22333   34555565543  233322      7888


Q ss_pred             hHHHHhcCCCeEEe
Q psy11600        123 IEPMADANVDQYTF  136 (277)
Q Consensus       123 i~~~~~~g~d~it~  136 (277)
                      ++.++ +|||.+.+
T Consensus       300 ~kala-lGAd~V~i  312 (368)
T 2nli_A          300 AKALA-SGADVVAL  312 (368)
T ss_dssp             HHHHH-TTCSEEEE
T ss_pred             HHHHH-cCCCEEEE
Confidence            88887 89998887

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}

Probab=90.04  E-value=2.9  Score=36.05  Aligned_cols=97  Identities=15%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc--ccc-hhhhhH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV--GQV-LQDWIE  124 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~--~d~-p~~~i~  124 (277)
                      .+|.++.++.+|+..|+++.-. +....+.+..+.+...|++.++.++...  .+.+++.+++.+..+  ..+ -...+.
T Consensus       149 ~SF~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v~~WTvn~~~~~~  225 (252)
T 3qvq_A          149 SSFNYFALVSAKALWPEIARGY-NVSAIPSAWQERLEHLDCAGLHIHQSFF--DVQQVSDIKAAGYKVLAFTINDESLAL  225 (252)
T ss_dssp             EESCHHHHHHHHHHCTTSCEEE-ECSSCCTTHHHHHHHHTCSEEEEEGGGC--CHHHHHHHHHTTCEEEEECCCCHHHHH
T ss_pred             EeCCHHHHHHHHHHCCCCcEEE-EEecCchhHHHHHHHcCCeEEecchhhC--CHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            4689999999999888876432 3333355566666778999997666544  478999998887653  333 234567


Q ss_pred             HHHhcCCCeEEeecCCCCChHHHHHHHH
Q psy11600        125 PMADANVDQYTFHVEPVDNVPQVIRQIK  152 (277)
Q Consensus       125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~  152 (277)
                      .+.+.|+|.|+=-     .+..+.+.++
T Consensus       226 ~l~~~GVdgIiTD-----~P~~~~~~l~  248 (252)
T 3qvq_A          226 KLYNQGLDAVFSD-----YPQKIQSAID  248 (252)
T ss_dssp             HHHHTTCCEEEES-----SHHHHHHHHH
T ss_pred             HHHHcCCCEEEeC-----CHHHHHHHHH
Confidence            8889999988752     3444444444

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=89.96  E-value=3  Score=40.63  Aligned_cols=114  Identities=13%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             HHHHHHHHcCCCEEEEeccc-cccccCCCC----CHHHHHHHHhcCCCCeeeeeeeccC-------c----HHhHHHHHh
Q psy11600         22 SESQNLLDSGADYLHLDVMD-GTFVPNLTF----GHPVVKCLRNKIPKAFFETHMMVQN-------P----QQWIEPMAD   85 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimD-g~fvp~~~~----g~~~v~~l~~~~~~~~~d~Hlmv~~-------p----~~~i~~l~~   85 (277)
                      +-++.|.+.|+++  +.+-= +.|..++.|    ..+.++.+++..|+..+-+.+-..|       |    ...++...+
T Consensus        51 ~Ia~~L~~~Gv~~--IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~  128 (539)
T 1rqb_A           51 GACADIDAAGYWS--VECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAE  128 (539)
T ss_dssp             GGHHHHHHTTCSE--EEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCE--EEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHHHHh
Confidence            3455566678877  44321 124332222    2467888888778887776552222       2    345788889


Q ss_pred             cCCCeEEEeccCCCC--CHHHHHHHHhhCCCc---ccc-------h---hhhhHHHHhcCCCeEEee
Q psy11600         86 ANVDQYTFHVEPVDN--VPQVIRQIKEAGMKV---GQV-------L---QDWIEPMADANVDQYTFH  137 (277)
Q Consensus        86 ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~---~d~-------p---~~~i~~~~~~g~d~it~H  137 (277)
                      +|++.+++-.-..+.  ....++.+|+.+..+   +..       |   .+.++.+.++||+.|++-
T Consensus       129 aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~L~  195 (539)
T 1rqb_A          129 NGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALK  195 (539)
T ss_dssp             TTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence            999999544222332  456677777776543   211       3   344566788899988875

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}

Probab=89.90  E-value=1.9  Score=37.18  Aligned_cols=86  Identities=15%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc--ccc-hhhhhH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV--GQV-LQDWIE  124 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~--~d~-p~~~i~  124 (277)
                      .+|.++.++.+|+..|++++-. +.-..+.+..+.+.+.|++.++.++...  .+.+++.+++.+..+  .-+ ....+.
T Consensus       150 ~SF~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v~~wTvn~~~~~~  226 (252)
T 2pz0_A          150 SSFNHYSLRDVKKMAPHLKIGL-LYQCGLVEPWHMALRMEAYSLHPFYFNI--IPELVEGCKKNGVKLFPWTVDRKEDME  226 (252)
T ss_dssp             EESBHHHHHHHHHHCTTSEEEE-EECSBCSSTHHHHHHTTCSEEEEBGGGC--CHHHHHHHHHTTCEECCBCCCSHHHHH
T ss_pred             EeCCHHHHHHHHHHCCCCCEEE-EecCccccHHHHHHHcCCeEEecchhcC--CHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence            3688999999999878876543 2222334445566778999996655444  488999999987653  233 344567


Q ss_pred             HHHhcCCCeEEe
Q psy11600        125 PMADANVDQYTF  136 (277)
Q Consensus       125 ~~~~~g~d~it~  136 (277)
                      .+.+.|+|.|+-
T Consensus       227 ~l~~~GvdgIiT  238 (252)
T 2pz0_A          227 RMIKAGVDGIIT  238 (252)
T ss_dssp             HHHHHTCSEEEE
T ss_pred             HHHHcCCCEEEc
Confidence            788999998875

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=89.84  E-value=3.1  Score=39.53  Aligned_cols=70  Identities=16%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      ....+.++.+.+.|+|.+-++...|.+.    .-.+.++++|+.+|++|+-+. .+.++ +..+.+.++|+|.|.+
T Consensus       236 ~~~~~~a~~l~~aGvd~v~i~~~~G~~~----~~~e~i~~i~~~~p~~pvi~g-~~~t~-e~a~~l~~~G~d~I~v  305 (494)
T 1vrd_A          236 PETMERVEKLVKAGVDVIVIDTAHGHSR----RVIETLEMIKADYPDLPVVAG-NVATP-EGTEALIKAGADAVKV  305 (494)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSCCSSH----HHHHHHHHHHHHCTTSCEEEE-EECSH-HHHHHHHHTTCSEEEE
T ss_pred             HhHHHHHHHHHHhCCCEEEEEecCCchH----HHHHHHHHHHHHCCCceEEeC-CcCCH-HHHHHHHHcCCCEEEE
Confidence            4556788899999999988877766432    345889999998878887653 23444 4568889999999965

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=89.82  E-value=9  Score=33.01  Aligned_cols=53  Identities=17%  Similarity=0.205  Sum_probs=36.0

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCc-------HHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~t-------v~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      +.++++.+.. .+.+..-||++..+       +..+.++|++.   |+..+. ++..+.++++++
T Consensus       192 ~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~  255 (273)
T 2qjg_A          192 DSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCK  255 (273)
T ss_dssp             HHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHH
Confidence            4455555443 57788899999877       77777888874   555554 466677777665

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=89.74  E-value=0.46  Score=41.44  Aligned_cols=170  Identities=10%  Similarity=0.122  Sum_probs=98.1

Q ss_pred             eeeeccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhhCCC-cc-----cc---hhhhhHHHHhcCCCeEEe
Q psy11600         69 THMMVQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEAGMK-VG-----QV---LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        69 ~Hlmv~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~~~~-~~-----d~---p~~~i~~~~~~g~d~it~  136 (277)
                      +-|=+.++++.++.+.+.+  ++++=+|.+.. .+|+.+++.+|+.... ..     |+   +..+++.+.++|+|++|+
T Consensus        13 vALD~~~~~~al~l~~~~~~~v~~~Kvg~~lf~~~G~~~v~~L~~~g~~iflDlK~~DI~nTv~~~~~~~~~~gad~vTv   92 (239)
T 3tr2_A           13 VAIDAGTVEQARAQINPLTPELCHLKIGSILFTRYGPAFVEELMQKGYRIFLDLKFYDIPQTVAGACRAVAELGVWMMNI   92 (239)
T ss_dssp             EECCCSSHHHHHHHHTTCCTTTCEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEeCCCCHHHHHHHHHHhCCcccEEEeCHHHHHhhCHHHHHHHHhcCCCEEEEecccccchHHHHHHHHHHhCCCCEEEE
Confidence            3344556777676666554  55777787763 4599999999987543 33     44   466889999999999999


Q ss_pred             ecCCCCChHHHHHHHHH----hC-C--ccceeeCCCCCHH--hH-------------HHHHh---hcCceEEEEecCCCC
Q psy11600        137 HVEPVDNVPQVIRQIKE----AG-M--KVGLAIKPKTPVD--VI-------------AEYIE---SADLVLIMTVEPGFG  191 (277)
Q Consensus       137 H~E~~~~~~~~~~~I~~----~g-~--~~g~~i~p~t~~~--~i-------------~~~i~---~~d~vl~mav~Pgt~  191 (277)
                      |.-   .-.+.++...+    .+ .  ..-+++-.=|+.+  .+             ..+.+   ..+ +.++. .+.  
T Consensus        93 h~~---~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~A~~a~~~g-~~GvV-~s~--  165 (239)
T 3tr2_A           93 HIS---GGRTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAG-LDGVV-CSA--  165 (239)
T ss_dssp             EGG---GCHHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHHT-CCEEE-CCH--
T ss_pred             ecc---CCHHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcCCCCCHHHHHHHHHHHHHHcC-CCEEE-ECc--
Confidence            986   22333332222    11 0  1134433333332  11             11111   111 11111 111  


Q ss_pred             CchhhhhhhhhHHHHHhhCC-CccEEEeCCCCc-----------CcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        192 GQKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-----------NTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       192 gq~~~~~~l~kI~~l~~~~~-~~~i~vdGgV~~-----------~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                               ...+.+++..+ ++ +.|-+||..           +|..++.++|+++   |...|. ++..+.++++++.
T Consensus       166 ---------~e~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~~~i~~~  235 (239)
T 3tr2_A          166 ---------QEAALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKD  235 (239)
T ss_dssp             ---------HHHHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             ---------hhHHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence                     12455665543 44 446677765           3788899999997   777777 4777778877764

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=89.64  E-value=2.4  Score=37.46  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             eeec--cccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          9 GPSI--LNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         9 ~~s~--~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      |||-  ++-| .+..+..+..++.|++++|+=--++-|-    =+++.++.+|+. .++|+..-=.+-++. +++...++
T Consensus        62 sPs~g~i~~~-~~p~~~A~~y~~~GA~~isvltd~~~f~----Gs~~~l~~ir~~-v~lPvl~kdfiid~~-qv~~A~~~  134 (272)
T 3qja_A           62 SPSAGALATI-ADPAKLAQAYQDGGARIVSVVTEQRRFQ----GSLDDLDAVRAS-VSIPVLRKDFVVQPY-QIHEARAH  134 (272)
T ss_dssp             ------------CHHHHHHHHHHTTCSEEEEECCGGGHH----HHHHHHHHHHHH-CSSCEEEESCCCSHH-HHHHHHHT
T ss_pred             CCCCCccCCC-CCHHHHHHHHHHcCCCEEEEecChhhcC----CCHHHHHHHHHh-CCCCEEECccccCHH-HHHHHHHc
Confidence            5663  3333 3566677788899999999643333231    125789999986 788887654444554 36777889


Q ss_pred             CCCeEEEeccCCCC--CHHHHHHHHhhCCCc-ccc--hhhhhHHHHhcCCCeEEeec
Q psy11600         87 NVDQYTFHVEPVDN--VPQVIRQIKEAGMKV-GQV--LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        87 g~d~i~~H~e~~d~--g~~~i~~i~~~~~~~-~d~--p~~~i~~~~~~g~d~it~H~  138 (277)
                      |+|.+++.....+.  -..+++..++.+..+ .++  +++ ++...++|+|+|.+..
T Consensus       135 GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee-~~~A~~~Gad~IGv~~  190 (272)
T 3qja_A          135 GADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQE-ADRALKAGAKVIGVNA  190 (272)
T ss_dssp             TCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHHHHTCSEEEEES
T ss_pred             CCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHH-HHHHHHCCCCEEEECC
Confidence            99999554333331  122333444433332 122  333 4444567888877753

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=89.55  E-value=1.1  Score=40.85  Aligned_cols=78  Identities=13%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIEP  125 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~~  125 (277)
                      ...+++.|+.+|..++.+  -|.++ ++++...++|+|+|  -+|.++  +..++.+.+..  ...+.+    -.+-+..
T Consensus       219 ~~Av~~ar~~~p~~kIeV--EVdtl-dea~eAl~aGaD~I--~LDn~~--~~~l~~av~~l~~~v~ieaSGGIt~~~I~~  291 (320)
T 3paj_A          219 RQAISTAKQLNPGKPVEV--ETETL-AELEEAISAGADII--MLDNFS--LEMMREAVKINAGRAALENSGNITLDNLKE  291 (320)
T ss_dssp             HHHHHHHHHHSTTSCEEE--EESSH-HHHHHHHHTTCSEE--EEESCC--HHHHHHHHHHHTTSSEEEEESSCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEE--EECCH-HHHHHHHHcCCCEE--EECCCC--HHHHHHHHHHhCCCCeEEEECCCCHHHHHH
Confidence            367888898888776655  66677 45666777999999  556554  66676665543  223333    6778899


Q ss_pred             HHhcCCCeEEe
Q psy11600        126 MADANVDQYTF  136 (277)
Q Consensus       126 ~~~~g~d~it~  136 (277)
                      +++.|+|+|++
T Consensus       292 ~a~tGVD~isv  302 (320)
T 3paj_A          292 CAETGVDYISV  302 (320)
T ss_dssp             HHTTTCSEEEC
T ss_pred             HHHcCCCEEEE
Confidence            99999999987

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=89.51  E-value=1.1  Score=40.54  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC-C-Ccccc----hhhhhHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-M-KVGQV----LQDWIEP  125 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~-~-~~~d~----p~~~i~~  125 (277)
                      ...++..|+..|..++.|  -|.++ ++++...++|+|.|  -+|-++  +..++++.+.. . ..+.+    -.+-+..
T Consensus       195 ~~Av~~ar~~~p~~kIeV--Ev~tl-~e~~eAl~aGaDiI--mLDn~s--~~~l~~av~~~~~~v~leaSGGIt~~~i~~  267 (300)
T 3l0g_A          195 TLAIQRLRKNLKNEYIAI--ECDNI-SQVEESLSNNVDMI--LLDNMS--ISEIKKAVDIVNGKSVLEVSGCVNIRNVRN  267 (300)
T ss_dssp             HHHHHHHHHHSSSCCEEE--EESSH-HHHHHHHHTTCSEE--EEESCC--HHHHHHHHHHHTTSSEEEEESSCCTTTHHH
T ss_pred             HHHHHHHHHhCCCCCEEE--EECCH-HHHHHHHHcCCCEE--EECCCC--HHHHHHHHHhhcCceEEEEECCCCHHHHHH
Confidence            367888898777776665  56666 56666777899999  666544  66666554432 2 23333    6778899


Q ss_pred             HHhcCCCeEEee
Q psy11600        126 MADANVDQYTFH  137 (277)
Q Consensus       126 ~~~~g~d~it~H  137 (277)
                      +++.|+|+|++-
T Consensus       268 ~A~tGVD~IsvG  279 (300)
T 3l0g_A          268 IALTGVDYISIG  279 (300)
T ss_dssp             HHTTTCSEEECG
T ss_pred             HHHcCCCEEEeC
Confidence            999999999974

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}

Probab=89.50  E-value=1.7  Score=37.35  Aligned_cols=86  Identities=14%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIE  124 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~  124 (277)
                      .+|.++.++.+|+..|++++-. +.-..+.++.+.+.+.|++.+++++...  .+.+++.+++.+..+.  -+ -..-+.
T Consensus       146 ~Sf~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v~~wTvn~~~~~~  222 (247)
T 2otd_A          146 SSFEIDALEAAQQAAPELPRGL-LLDEWRDDWRELTARLGCVSIHLNHKLL--DKARVMQLKDAGLRILVYTVNKPQHAA  222 (247)
T ss_dssp             EESCHHHHHHHHHHCTTSCEEE-EESSCCTTHHHHHHHHTCSEEEEEGGGC--CHHHHHHHHHTTCEEEEECCCCHHHHH
T ss_pred             EcCCHHHHHHHHHHCCCCCEEE-EecCCcccHHHHHHHcCCeEEecChHhC--CHHHHHHHHHCCCEEEEEccCCHHHHH
Confidence            3588999999999888876533 2223455555666777999997766554  4788888888775532  22 223456


Q ss_pred             HHHhcCCCeEEe
Q psy11600        125 PMADANVDQYTF  136 (277)
Q Consensus       125 ~~~~~g~d~it~  136 (277)
                      .+.+.|+|.|+-
T Consensus       223 ~l~~~GvdgI~T  234 (247)
T 2otd_A          223 ELLRWGVDCICT  234 (247)
T ss_dssp             HHHHHTCSEEEE
T ss_pred             HHHHcCCCEEEe
Confidence            677888887764

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=89.44  E-value=2.6  Score=40.19  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=84.1

Q ss_pred             HHHHHhcCCCeEEEeccCCC-C--CHHHHHHHHhhCC-Ccc----cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHH
Q psy11600         80 IEPMADANVDQYTFHVEPVD-N--VPQVIRQIKEAGM-KVG----QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQ  150 (277)
Q Consensus        80 i~~l~~ag~d~i~~H~e~~d-~--g~~~i~~i~~~~~-~~~----d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~  150 (277)
                      +....++|+|++-|-+.... -  .+...++|.+... ..+    +. ++...+...+++.|.+=+|=+   ......+.
T Consensus       268 a~~a~~~Gad~iGfIf~~~SpR~V~~~~a~~i~~~~~v~~VgVFvn~~~~~i~~~~~~~~ld~vQLHG~---E~~~~~~~  344 (452)
T 1pii_A          268 AKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGN---EEQLYIDT  344 (452)
T ss_dssp             HHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHHHHHHHTCSEEEECSC---CCHHHHHH
T ss_pred             HHHHHhcCCCEEEeecCCCCCCCCCHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC---CCHHHHHH
Confidence            34445779999988864321 1  5666666655531 111    11 566666777889999999975   44445555


Q ss_pred             HHHh---CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHH
Q psy11600        151 IKEA---GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTID  227 (277)
Q Consensus       151 I~~~---g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~  227 (277)
                      ++..   +.+.=.++..+..++. ..|- .+|.+++=+ ..|..|+.|.-.++..       .....+.+.||++.+|+.
T Consensus       345 l~~~~p~~~~iika~~v~~~~~~-~~~~-~~d~~LlD~-~~GGtG~~fdW~~l~~-------~~~~p~iLAGGL~p~NV~  414 (452)
T 1pii_A          345 LREALPAHVAIWKALSVGETLPA-REFQ-HVDKYVLDN-GQGGSGQRFDWSLLNG-------QSLGNVLLAGGLGADNCV  414 (452)
T ss_dssp             HHHHSCTTSEEEEEEECSSSCCC-CCCT-TCCEEEEES-CSCCSSCCCCGGGGTT-------SCCTTEEEESSCCTTTHH
T ss_pred             HHhhccCCCcEEEEEecCCccch-hhhh-cccEEEecC-CCCCCCCccCHHHhhc-------ccCCcEEEEcCCCHHHHH
Confidence            6542   2222222333322221 1111 367766555 4466788887655532       124568899999999998


Q ss_pred             HHHHccCC
Q psy11600        228 ECAKCLTG  235 (277)
Q Consensus       228 ~~~~~gpg  235 (277)
                      +..+.+|-
T Consensus       415 ~ai~~~p~  422 (452)
T 1pii_A          415 EAAQTGCA  422 (452)
T ss_dssp             HHHTTCCS
T ss_pred             HHHhcCCC
Confidence            77667765

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=89.20  E-value=0.55  Score=42.31  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=44.9

Q ss_pred             hhhHHHHHhhCCC-ccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHH
Q psy11600        200 MPKVKWLRENYPT-LNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       200 l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~  273 (277)
                      .+-++.+++..+. ..+.+    ...|.++   ..++|+++ .-..|.++.++++. .++...++..|++-||||++|++
T Consensus       184 ~~ai~~~r~~~~~~~~i~v----ev~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~~~~~~~~I~ASGGIt~~ni~  259 (299)
T 2jbm_A          184 EKAVRAARQAADFALKVEV----ECSSLQEAVQAAEAGADLVLLDNFKPEELHPTATVLKAQFPSVAVEASGGITLDNLP  259 (299)
T ss_dssp             HHHHHHHHHHHTTTSCEEE----EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEEEESSCCTTTHH
T ss_pred             HHHHHHHHHhCCcCCeEEE----ecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeeEEEECCCCHHHHH
Confidence            3446666665543 34443    2445444   45677776 22334454444433 34445678899999999999999


Q ss_pred             HhhC
Q psy11600        274 ECAK  277 (277)
Q Consensus       274 ~~~~  277 (277)
                      .+++
T Consensus       260 ~~~~  263 (299)
T 2jbm_A          260 QFCG  263 (299)
T ss_dssp             HHCC
T ss_pred             HHHH
Confidence            8763

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=89.19  E-value=4.6  Score=34.93  Aligned_cols=77  Identities=10%  Similarity=0.157  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN  100 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~  100 (277)
                      .++.+.+.++|++++|        .|+  +.+++++..++.  ++++-...+  +|.+-. ...++|+|++-+..-..-|
T Consensus        96 ~~~a~~Ai~AGA~fIv--------sP~--~~~~vi~~~~~~--gi~~ipGv~--TptEi~-~A~~~Gad~vK~FPa~~~g  160 (232)
T 4e38_A           96 GEQALAAKEAGATFVV--------SPG--FNPNTVRACQEI--GIDIVPGVN--NPSTVE-AALEMGLTTLKFFPAEASG  160 (232)
T ss_dssp             HHHHHHHHHHTCSEEE--------CSS--CCHHHHHHHHHH--TCEEECEEC--SHHHHH-HHHHTTCCEEEECSTTTTT
T ss_pred             HHHHHHHHHcCCCEEE--------eCC--CCHHHHHHHHHc--CCCEEcCCC--CHHHHH-HHHHcCCCEEEECcCcccc
Confidence            6788888999999987        466  678889888874  788877755  677655 4567899999775422236


Q ss_pred             CHHHHHHHHhhC
Q psy11600        101 VPQVIRQIKEAG  112 (277)
Q Consensus       101 g~~~i~~i~~~~  112 (277)
                      |+..+++++..-
T Consensus       161 G~~~lkal~~p~  172 (232)
T 4e38_A          161 GISMVKSLVGPY  172 (232)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHh
Confidence            899999998754

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=88.96  E-value=0.87  Score=42.19  Aligned_cols=69  Identities=16%  Similarity=0.140  Sum_probs=50.8

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      +..+.++.+.+.|+|.+|+|...|+.-    .-.+.++++|+.+|++++-+. .+..+ +.++.+.++|+|.+.+
T Consensus       108 ~~~~~~~~lieaGvd~I~idta~G~~~----~~~~~I~~ik~~~p~v~Vi~G-~v~t~-e~A~~a~~aGAD~I~v  176 (366)
T 4fo4_A          108 GNEERVKALVEAGVDVLLIDSSHGHSE----GVLQRIRETRAAYPHLEIIGG-NVATA-EGARALIEAGVSAVKV  176 (366)
T ss_dssp             TCHHHHHHHHHTTCSEEEEECSCTTSH----HHHHHHHHHHHHCTTCEEEEE-EECSH-HHHHHHHHHTCSEEEE
T ss_pred             hHHHHHHHHHhCCCCEEEEeCCCCCCH----HHHHHHHHHHHhcCCCceEee-eeCCH-HHHHHHHHcCCCEEEE
Confidence            356788899999999999998766421    223568899988888877553 23444 4567788999999976

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=88.87  E-value=1.8  Score=40.15  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-----
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-----   93 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-----   93 (277)
                      +..+.++.+.+.|+|.+.++..-|  -|  .+-.+.++++|+.++++|+-+. -+.+ .+.++.+.++|+|.|.+     
T Consensus       153 ~~~~~a~~~~~~G~d~i~i~~~~g--~~--~~~~e~i~~ir~~~~~~pviv~-~v~~-~~~a~~a~~~Gad~I~vg~~~G  226 (404)
T 1eep_A          153 DTIERVEELVKAHVDILVIDSAHG--HS--TRIIELIKKIKTKYPNLDLIAG-NIVT-KEAALDLISVGADCLKVGIGPG  226 (404)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCC--SS--HHHHHHHHHHHHHCTTCEEEEE-EECS-HHHHHHHHTTTCSEEEECSSCS
T ss_pred             hHHHHHHHHHHCCCCEEEEeCCCC--Ch--HHHHHHHHHHHHHCCCCeEEEc-CCCc-HHHHHHHHhcCCCEEEECCCCC
Confidence            346677788889999977753322  12  2345778999988668887762 1223 46788889999999977     


Q ss_pred             -ecc----CCCCCH--HHHHHHHh---hCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         94 -HVE----PVDNVP--QVIRQIKE---AGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        94 -H~e----~~d~g~--~~i~~i~~---~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                       |..    ...++|  ..++.+++   ....|+-.      +.+..+.++ +|||.+.+
T Consensus       227 ~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala-~GAd~V~i  284 (404)
T 1eep_A          227 SICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA-AGADSVMI  284 (404)
T ss_dssp             TTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH-HTCSEEEE
T ss_pred             cCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHH-cCCCHHhh
Confidence             210    001232  23455554   22333322      666666665 78888877

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=88.73  E-value=1.1  Score=41.43  Aligned_cols=115  Identities=15%  Similarity=0.086  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHcCCCEEEEecccc--------------------ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC----
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDG--------------------TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN----   75 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg--------------------~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~----   75 (277)
                      +.+..+++.++|.|.+-+..--|                    .+-....|-.++++++|+.++.-++-+-|=..+    
T Consensus       163 f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g  242 (361)
T 3gka_A          163 FRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHT  242 (361)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS
T ss_pred             HHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCC
Confidence            34555667889999944333221                    111122244789999998865326655444321    


Q ss_pred             -----c----HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcC-CCeEEee
Q psy11600         76 -----P----QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADAN-VDQYTFH  137 (277)
Q Consensus        76 -----p----~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g-~d~it~H  137 (277)
                           +    .+.++.+.++|+|++++|.-.  .++..++.+|+....|+-.     |+.- +.+.+.| ||.|.|=
T Consensus       243 ~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~~~~~~ik~~~~iPvi~~Ggit~e~a-~~~l~~G~aD~V~iG  316 (361)
T 3gka_A          243 MGDSDPAATFGHVARELGRRRIAFLFARESF--GGDAIGQQLKAAFGGPFIVNENFTLDSA-QAALDAGQADAVAWG  316 (361)
T ss_dssp             CCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--STTCCHHHHHHHHCSCEEEESSCCHHHH-HHHHHTTSCSEEEES
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEECCCC--CCHHHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHcCCccEEEEC
Confidence                 1    234778889999999887533  2346788888876555422     4444 4445555 9999883

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=88.63  E-value=1.8  Score=39.81  Aligned_cols=118  Identities=13%  Similarity=0.162  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccc----c-ccC---------------CCCCHHHHHHHHhcCC-CCeeeeeeecc----
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGT----F-VPN---------------LTFGHPVVKCLRNKIP-KAFFETHMMVQ----   74 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~----f-vp~---------------~~~g~~~v~~l~~~~~-~~~~d~Hlmv~----   74 (277)
                      +.+..++++++|.|.+-+..--|-    | .|+               ..|-.++|+++|+..+ +.++-+-|-..    
T Consensus       160 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~  239 (363)
T 3l5l_A          160 FVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG  239 (363)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS
T ss_pred             HHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC
Confidence            345556677889999444432221    1 121               1233679999998764 55665544322    


Q ss_pred             -------CcHHhHHHHHhcCCCeEEEeccC---------CC-CCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcC-C
Q psy11600         75 -------NPQQWIEPMADANVDQYTFHVEP---------VD-NVPQVIRQIKEAGMKVGQV-----LQDWIEPMADAN-V  131 (277)
Q Consensus        75 -------~p~~~i~~l~~ag~d~i~~H~e~---------~d-~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g-~  131 (277)
                             +..+.++.+.++|+|++++|.-.         .. ....+++.+|+....|+-.     -.+-++.+.+.| |
T Consensus       240 ~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~a  319 (363)
T 3l5l_A          240 RDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQL  319 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCc
Confidence                   23345788889999999888411         01 1346788888877665533     133455556666 9


Q ss_pred             CeEEee
Q psy11600        132 DQYTFH  137 (277)
Q Consensus       132 d~it~H  137 (277)
                      |.|.|=
T Consensus       320 D~V~iG  325 (363)
T 3l5l_A          320 DLVSVG  325 (363)
T ss_dssp             SEEECC
T ss_pred             cEEEec
Confidence            998873

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=88.61  E-value=0.97  Score=41.79  Aligned_cols=114  Identities=14%  Similarity=0.044  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccc------c-cc--C-------------CCCCHHHHHHHHhcCCCCeeeeeeeccC--
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGT------F-VP--N-------------LTFGHPVVKCLRNKIPKAFFETHMMVQN--   75 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~------f-vp--~-------------~~~g~~~v~~l~~~~~~~~~d~Hlmv~~--   75 (277)
                      +.+..+++.++|.|.  |+|-=++      | .|  |             ..|-.++|+++|+.++.-++-+-|-..+  
T Consensus       155 f~~AA~~a~~aGfDg--VEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~  232 (362)
T 4ab4_A          155 YRSGAENAKAAGFDG--VEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADA  232 (362)
T ss_dssp             HHHHHHHHHHTTCSE--EEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCS
T ss_pred             HHHHHHHHHHcCCCE--EEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccc
Confidence            335556678889999  5544332      1 12  1             2234789999998865335655544321  


Q ss_pred             -------c----HHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEee
Q psy11600         76 -------P----QQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus        76 -------p----~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H  137 (277)
                             +    .+.++.+.++|+|++++|.-.  .++..++.+|+....|+-.     |+.-.+.+.+-+||.|.|=
T Consensus       233 ~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iG  308 (362)
T 4ab4_A          233 HDMGDADRAETFTYVARELGKRGIAFICSRERE--ADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFG  308 (362)
T ss_dssp             SSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC--CTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred             cccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEEC
Confidence                   1    223777889999999887543  2346788888876655422     5544444444449999883

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=88.59  E-value=1.9  Score=38.30  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeecc--------
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ--------   74 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~--------   74 (277)
                      +.+|..|+..-+...+.++++.+...|+|.+=+  |..+...  +...=.+.++.+|+..+++|+-+++-..        
T Consensus        39 ~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~--~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~  116 (276)
T 3o1n_A           39 APKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVT--TAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQAL  116 (276)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTT--CHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCC
T ss_pred             CcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccC--cHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCC
Confidence            457888999889888888888888778887554  5444211  1111235677888865589999988763        


Q ss_pred             CcHHhHHHH---HhcC-CCeEEEeccCCCCCHHHHHHH----HhhCCC----cccc---h--hhh---hHHHHhcCCCeE
Q psy11600         75 NPQQWIEPM---ADAN-VDQYTFHVEPVDNVPQVIRQI----KEAGMK----VGQV---L--QDW---IEPMADANVDQY  134 (277)
Q Consensus        75 ~p~~~i~~l---~~ag-~d~i~~H~e~~d~g~~~i~~i----~~~~~~----~~d~---p--~~~---i~~~~~~g~d~i  134 (277)
                      +.++|++.+   .+.| +|++  .+|.. .....++++    ++...+    .||.   |  ++|   +..+.+.|||.+
T Consensus       117 ~~~~~~~ll~~~l~~g~~dyI--DvEl~-~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIv  193 (276)
T 3o1n_A          117 TTGQYIDLNRAAVDSGLVDMI--DLELF-TGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIP  193 (276)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEE--EEEGG-GCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHHHhcCCCCEE--EEECc-CCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEE
Confidence            234455444   4558 9999  66642 223444444    333332    2332   3  233   344556688765


Q ss_pred             EeecCCCCChHHHHHHHH
Q psy11600        135 TFHVEPVDNVPQVIRQIK  152 (277)
Q Consensus       135 t~H~E~~~~~~~~~~~I~  152 (277)
                      =+=.-|. +..+.++.++
T Consensus       194 Kia~~a~-s~~Dvl~Ll~  210 (276)
T 3o1n_A          194 KIAVMPQ-TKADVLTLLT  210 (276)
T ss_dssp             EEEECCS-SHHHHHHHHH
T ss_pred             EEEecCC-ChHHHHHHHH
Confidence            5433211 4455555444

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=88.29  E-value=3  Score=40.17  Aligned_cols=69  Identities=17%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      +..+.++.|.+.|+|.+.+|..+|++.    .-.+.++++|+.+|++++-+. -+. ..+..+.+.++|+|.+.+
T Consensus       256 d~~era~aLveaGvd~I~Id~a~g~~~----~v~~~i~~i~~~~~~~~vi~g-~v~-t~e~a~~~~~aGad~i~v  324 (511)
T 3usb_A          256 DAMTRIDALVKASVDAIVLDTAHGHSQ----GVIDKVKEVRAKYPSLNIIAG-NVA-TAEATKALIEAGANVVKV  324 (511)
T ss_dssp             THHHHHHHHHHTTCSEEEEECSCTTSH----HHHHHHHHHHHHCTTSEEEEE-EEC-SHHHHHHHHHHTCSEEEE
T ss_pred             chHHHHHHHHhhccceEEecccccchh----hhhhHHHHHHHhCCCceEEee-eec-cHHHHHHHHHhCCCEEEE
Confidence            445678888899999999998876543    224689999999888777652 233 345678889999999965

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=88.28  E-value=5.2  Score=37.17  Aligned_cols=83  Identities=14%  Similarity=0.079  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe--cc-CCCCCH---HHHHHHHhhC--CCcccc---
Q psy11600         50 FGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH--VE-PVDNVP---QVIRQIKEAG--MKVGQV---  118 (277)
Q Consensus        50 ~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H--~e-~~d~g~---~~i~~i~~~~--~~~~d~---  118 (277)
                      +..+.|+++|+. +++|+-+-. +.+ .+..+.+.++|+|.|+++  -- ..++++   ..+.++++..  ..++-.   
T Consensus       239 ~~~~~i~~lr~~-~~~PvivKg-v~~-~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GG  315 (392)
T 2nzl_A          239 ISWEDIKWLRRL-TSLPIVAKG-ILR-GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGG  315 (392)
T ss_dssp             CCHHHHHHHC---CCSCEEEEE-ECC-HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSS
T ss_pred             HHHHHHHHHHHh-hCCCEEEEe-cCC-HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECC
Confidence            456778999986 678888763 334 456788999999999884  21 123333   3444555432  233322   


Q ss_pred             ---hhhhhHHHHhcCCCeEEe
Q psy11600        119 ---LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 ---p~~~i~~~~~~g~d~it~  136 (277)
                         +.+.++.++ +|||.+.+
T Consensus       316 I~~g~Dv~kala-lGAd~V~i  335 (392)
T 2nzl_A          316 VRKGTDVLKALA-LGAKAVFV  335 (392)
T ss_dssp             CCSHHHHHHHHH-TTCSEEEE
T ss_pred             CCCHHHHHHHHH-hCCCeeEE
Confidence               788888877 79988887

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=88.25  E-value=3.4  Score=37.81  Aligned_cols=216  Identities=14%  Similarity=0.113  Sum_probs=112.0

Q ss_pred             eeccccCcc-cHHHHHHHHHHcCCCEEE-----------------EeccccccccCCCC---CH-HHHHHHHh---cCCC
Q psy11600         10 PSILNSDLS-NLHSESQNLLDSGADYLH-----------------LDVMDGTFVPNLTF---GH-PVVKCLRN---KIPK   64 (277)
Q Consensus        10 ~s~~~~d~~-~l~~~~~~l~~~~~~~~h-----------------~DimDg~fvp~~~~---g~-~~v~~l~~---~~~~   64 (277)
                      |=++++=+. +-.+.++.+...|.-.+=                 +..- ..+++.+.|   |. .+++.+++   ..++
T Consensus        50 Pv~lAaG~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~-~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~  128 (345)
T 3oix_A           50 CLMNAAGVYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTK-LGSINSMGLPNLGINYYLDYVTELQKQPDS  128 (345)
T ss_dssp             SEEECTTSSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECS-SEEEECCCCCBSCHHHHHHHHHHHHHSTTC
T ss_pred             CCEEcCCCCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecc-cchhccCCCCChhHHHHHHHHHHHhhccCC
Confidence            444555444 334677777777765521                 1111 123333344   33 34444543   2467


Q ss_pred             CeeeeeeeccCcHHhHHH---HHhcCCC-eEEEeccCC--CC----------CHHHHHHHHhhCCCcccc-------hhh
Q psy11600         65 AFFETHMMVQNPQQWIEP---MADANVD-QYTFHVEPV--DN----------VPQVIRQIKEAGMKVGQV-------LQD  121 (277)
Q Consensus        65 ~~~d~Hlmv~~p~~~i~~---l~~ag~d-~i~~H~e~~--d~----------g~~~i~~i~~~~~~~~d~-------p~~  121 (277)
                      .|+-+.+.-.++++|++.   +.++|++ ++.+.+-+-  .|          -.++++++|+.+..|+.+       ..+
T Consensus       129 ~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~  208 (345)
T 3oix_A          129 KNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVH  208 (345)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHH
Confidence            899999998899998554   4456876 897776431  11          345667777776666544       244


Q ss_pred             hhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhh
Q psy11600        122 WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMP  201 (277)
Q Consensus       122 ~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~  201 (277)
                      +.+...++|++.++++.-    +.       ..|  .++.+...++.      +.....      .-|.+|....+-.++
T Consensus       209 ~a~~~~~aga~~i~~int----~n-------t~g--~~~~i~~~~~~------~~~~~~------~gGlSG~ai~p~a~~  263 (345)
T 3oix_A          209 FDQAAAIFNXYPLTFVNC----IN-------SIG--NGLVIEDETVV------IXPKNG------FGGIGGDYVKPTALA  263 (345)
T ss_dssp             HHHHHHHHTTSCCSEEEE----CC-------CEE--EEECEETTEES------CSGGGG------EEEEEEGGGHHHHHH
T ss_pred             HHHHHHHhCCCceEEEEe----ec-------ccc--cceeeccCccc------cccccc------cCCcCCccccHHHHH
Confidence            445555556655544321    00       000  00001111000      000000      012334334444567


Q ss_pred             hHHHHHhhCC-CccEEEeCCCCc-CcHHHHHHccCCC---CCc-ccc-cCHHHHHHH
Q psy11600        202 KVKWLRENYP-TLNIEVDGGVGP-NTIDECAKCLTGF---GGQ-KFM-QDMMPKVKW  251 (277)
Q Consensus       202 kI~~l~~~~~-~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq-~F~-~~~~~kI~~  251 (277)
                      .+.++++..+ ++.+...|||.- +.+.++..+|++.   |.. .|. +...+++++
T Consensus       264 ~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~  320 (345)
T 3oix_A          264 NVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITK  320 (345)
T ss_dssp             HHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHH
Confidence            7888887665 789999999952 4455566788885   444 332 455555553

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=88.14  E-value=2.6  Score=38.93  Aligned_cols=98  Identities=11%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             CCeeeeeeeccC-------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc--hhhhhHHHHhcCCC
Q psy11600         64 KAFFETHMMVQN-------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV--LQDWIEPMADANVD  132 (277)
Q Consensus        64 ~~~~d~Hlmv~~-------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~--p~~~i~~~~~~g~d  132 (277)
                      +.|+.|-=|+..       ..+++..|.++|||++-+=+-.+ ...+.++.||+.+..|+  |.  --+.+..-+++|+|
T Consensus        29 ~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~-~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~d  107 (366)
T 3noy_A           29 DAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHK-EDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVH  107 (366)
T ss_dssp             TSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSH-HHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCS
T ss_pred             CCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCh-HHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCC
Confidence            456777777654       23368888999999995543221 24677888888877665  43  23455567899999


Q ss_pred             eEEeecCCCCCh------HHHHHHHHHhCCccceeeCCC
Q psy11600        133 QYTFHVEPVDNV------PQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus       133 ~it~H~E~~~~~------~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      .+.+.+.   +.      ..+.+..++.|...-+|.|.|
T Consensus       108 klRINPG---Nig~~~~~~~vv~~ak~~~~piRIGvN~G  143 (366)
T 3noy_A          108 GIRINPG---NIGKEEIVREIVEEAKRRGVAVRIGVNSG  143 (366)
T ss_dssp             EEEECHH---HHSCHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred             eEEECCc---ccCchhHHHHHHHHHHHcCCCEEEecCCc
Confidence            9999776   55      356777778787778888777

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=88.13  E-value=0.9  Score=42.10  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc----ccc-cC---------------CCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG----TFV-PN---------------LTFGHPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg----~fv-p~---------------~~~g~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      .+.+..++++++|.|.+.+..--|    +|. |.               ..|-.++|+++|+....-++-+-+-..    
T Consensus       168 ~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~  247 (376)
T 1icp_A          168 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYN  247 (376)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred             HHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccC
Confidence            556677788889999966554322    222 22               233467899999876522555555321    


Q ss_pred             -----C----cHHhHHHHHhcCCCeEEEeccCCC-C-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeE
Q psy11600         75 -----N----PQQWIEPMADANVDQYTFHVEPVD-N-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQY  134 (277)
Q Consensus        75 -----~----p~~~i~~l~~ag~d~i~~H~e~~d-~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~i  134 (277)
                           +    ..+.++.+.++|+|++++|.-..+ .     ....++.+|+....|+-.     |++..+.+.+-+||.|
T Consensus       248 g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i~~~~a~~~l~~g~aD~V  327 (376)
T 1icp_A          248 EAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLV  327 (376)
T ss_dssp             TCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHCCCCcEE
Confidence                 1    134577888899999988843211 1     123567788876655422     5555555555459998


Q ss_pred             Eee
Q psy11600        135 TFH  137 (277)
Q Consensus       135 t~H  137 (277)
                      .+=
T Consensus       328 ~~g  330 (376)
T 1icp_A          328 AYG  330 (376)
T ss_dssp             EES
T ss_pred             eec
Confidence            883

>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}

Probab=88.00  E-value=2.1  Score=39.54  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=18.7

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccc
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMD   41 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimD   41 (277)
                      .+.++++.|.++|++++.+|=-.
T Consensus       168 a~~~ei~~l~~aG~~~IQiDeP~  190 (375)
T 1ypx_A          168 AYQKAIQAFYDAGCRYLQLDDTS  190 (375)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECH
T ss_pred             HHHHHHHHHHHCCCCEEEecCCc
Confidence            35578888999999999998654

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=87.97  E-value=4.3  Score=35.57  Aligned_cols=129  Identities=19%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             hhhhHHHHhcCC--CeEEeecCCCCC------hHHHHHHHHHhCCccceeeCCCCCHHhHHH---HHhhcCceEEEEecC
Q psy11600        120 QDWIEPMADANV--DQYTFHVEPVDN------VPQVIRQIKEAGMKVGLAIKPKTPVDVIAE---YIESADLVLIMTVEP  188 (277)
Q Consensus       120 ~~~i~~~~~~g~--d~it~H~E~~~~------~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~---~i~~~d~vl~mav~P  188 (277)
                      .+.++.+.+...  ..+.+-+-   +      .++..+..++.|  ..--+-|..|+++..+   .++..++-++.-+.|
T Consensus        76 ~~~~~~~~~~r~~~Pivlm~Y~---N~i~~~G~e~F~~~~~~aG--vdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP  150 (252)
T 3tha_A           76 HSVFELLARIKTKKALVFMVYY---NLIFSYGLEKFVKKAKSLG--ICALIVPELSFEESDDLIKECERYNIALITLVSV  150 (252)
T ss_dssp             HHHHHHHHHCCCSSEEEEECCH---HHHHHHCHHHHHHHHHHTT--EEEEECTTCCGGGCHHHHHHHHHTTCEECEEEET
T ss_pred             HHHHHHHHHHhcCCCEEEEecc---CHHHHhhHHHHHHHHHHcC--CCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            455555555443  44444322   1      234556666666  4445668888865444   456677777777788


Q ss_pred             CCCCchhhhhhhhhHHHHHhhCCCccEEEe-CCCCcCcHHHHHHccCCCCC-cccccCHHHHHHHHHhhCCCCeEEEeCC
Q psy11600        189 GFGGQKFMQDMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKCLTGFGG-QKFMQDMMPKVKWLRENYPTLNIEVDGG  266 (277)
Q Consensus       189 gt~gq~~~~~~l~kI~~l~~~~~~~~i~vd-GgV~~~tv~~~~~~gpg~gg-q~F~~~~~~kI~~l~~~~~~~~I~VDGG  266 (277)
                      .++        .++++.+.+....+-..|. .|++              |. +.+.++..+.++++|+.. +.-+.|-+|
T Consensus       151 ~t~--------~eRi~~ia~~a~gFiY~Vs~~GvT--------------G~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfG  207 (252)
T 3tha_A          151 TTP--------KERVKKLVKHAKGFIYLLASIGIT--------------GTKSVEEAILQDKVKEIRSFT-NLPIFVGFG  207 (252)
T ss_dssp             TSC--------HHHHHHHHTTCCSCEEEECCSCSS--------------SCSHHHHHHHHHHHHHHHTTC-CSCEEEESS
T ss_pred             CCc--------HHHHHHHHHhCCCeEEEEecCCCC--------------CcccCCCHHHHHHHHHHHHhc-CCcEEEEcC
Confidence            776        3567777766666644442 1222              12 233345667777877764 567999999


Q ss_pred             C-CccCHHHhh
Q psy11600        267 V-GPNTIDECA  276 (277)
Q Consensus       267 I-~~~~~~~~~  276 (277)
                      | |+++++++.
T Consensus       208 Ist~e~a~~~~  218 (252)
T 3tha_A          208 IQNNQDVKRMR  218 (252)
T ss_dssp             CCSHHHHHHHT
T ss_pred             cCCHHHHHHHH
Confidence            9 568777654

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=87.89  E-value=2.2  Score=35.77  Aligned_cols=143  Identities=10%  Similarity=0.074  Sum_probs=79.0

Q ss_pred             HhHHHHHhcCCCeEEEeccCCCC-CHHHHHHHHhhCCCc-c-cchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh
Q psy11600         78 QWIEPMADANVDQYTFHVEPVDN-VPQVIRQIKEAGMKV-G-QVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA  154 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d~-g~~~i~~i~~~~~~~-~-d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~  154 (277)
                      +.++.+.++|++++.+-  ..+. ..+..+.+++.+... . .+..+.++...++|+|.|.+..+   +....    ...
T Consensus        17 ~~~~~a~~~Gv~~v~lr--~k~~~~~~~~~~i~~l~~~~~~~livnd~~~~A~~~gadgvhl~~~---~~~~~----~~~   87 (210)
T 3ceu_A           17 KIITALFEEGLDILHLR--KPETPAMYSERLLTLIPEKYHRRIVTHEHFYLKEEFNLMGIHLNAR---NPSEP----HDY   87 (210)
T ss_dssp             HHHHHHHHTTCCEEEEC--CSSCCHHHHHHHHHHSCGGGGGGEEESSCTTHHHHTTCSEEECCSS---SCSCC----TTC
T ss_pred             HHHHHHHHCCCCEEEEc--cCCCCHHHHHHHHHHHHHHhCCeEEEeCCHHHHHHcCCCEEEECcc---ccccc----ccc
Confidence            56888889999999444  2222 334455555554321 1 11235668889999999866544   33211    111


Q ss_pred             CCccceeeCCCCCHHhHHHHHhhcCceEEEEec-----CCCCCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCcCcHHH
Q psy11600        155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE-----PGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDE  228 (277)
Q Consensus       155 g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~-----Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~~tv~~  228 (277)
                      +...|.+  ..++ +++......+|++.+=.+-     |+++ ..+-   ++.++++.+.. .++-+...||++.+++.+
T Consensus        88 ~~~ig~s--~~t~-~e~~~A~~GaDyv~~g~vf~t~sk~~~~-~~~g---~~~l~~~~~~~~~~iPviaiGGI~~~nv~~  160 (210)
T 3ceu_A           88 AGHVSCS--CHSV-EEVKNRKHFYDYVFMSPIYDSISKVNYY-STYT---AEELREAQKAKIIDSKVMALGGINEDNLLE  160 (210)
T ss_dssp             CSEEEEE--ECSH-HHHHTTGGGSSEEEECCCC----------CCCC---HHHHHHHHHTTCSSTTEEEESSCCTTTHHH
T ss_pred             CCEEEEe--cCCH-HHHHHHhhCCCEEEECCcCCCCCCCCCC-CCCC---HHHHHHHHHhcCCCCCEEEECCCCHHHHHH
Confidence            3333333  3333 3333222457776532222     2210 0111   23345555443 567889999999999999


Q ss_pred             HHHccCCC
Q psy11600        229 CAKCLTGF  236 (277)
Q Consensus       229 ~~~~gpg~  236 (277)
                      +.++|+..
T Consensus       161 ~~~~Ga~g  168 (210)
T 3ceu_A          161 IKDFGFGG  168 (210)
T ss_dssp             HHHTTCSE
T ss_pred             HHHhCCCE
Confidence            99999885

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=87.85  E-value=0.97  Score=40.50  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             HHHHHHHHhcCCC-CeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC--CCcccc----hhhhhH
Q psy11600         52 HPVVKCLRNKIPK-AFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG--MKVGQV----LQDWIE  124 (277)
Q Consensus        52 ~~~v~~l~~~~~~-~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~--~~~~d~----p~~~i~  124 (277)
                      ...++..|+..+. .++.+  -+.+++ +++...++|+|++-++  .+  .+..++++.+..  ..++.+    -.+-+.
T Consensus       183 ~~av~~ar~~~~~~~~IgV--ev~t~e-ea~eA~~aGaD~I~ld--~~--~~~~~k~av~~v~~~ipi~AsGGIt~eni~  255 (286)
T 1x1o_A          183 GEAVRRAKARAPHYLKVEV--EVRSLE-ELEEALEAGADLILLD--NF--PLEALREAVRRVGGRVPLEASGNMTLERAK  255 (286)
T ss_dssp             HHHHHHHHHHSCTTSCEEE--EESSHH-HHHHHHHHTCSEEEEE--SC--CHHHHHHHHHHHTTSSCEEEESSCCHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEE--EeCCHH-HHHHHHHcCCCEEEEC--CC--CHHHHHHHHHHhCCCCeEEEEcCCCHHHHH
Confidence            4568888887654 45555  445654 4555668899999555  33  355666655443  234443    577889


Q ss_pred             HHHhcCCCeEEe
Q psy11600        125 PMADANVDQYTF  136 (277)
Q Consensus       125 ~~~~~g~d~it~  136 (277)
                      .++++|+|+|++
T Consensus       256 ~~a~tGvD~IsV  267 (286)
T 1x1o_A          256 AAAEAGVDYVSV  267 (286)
T ss_dssp             HHHHHTCSEEEC
T ss_pred             HHHHcCCCEEEE
Confidence            999999999997

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=87.75  E-value=0.61  Score=41.81  Aligned_cols=73  Identities=12%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeee--eccCcHHhHHHHHhcCCCe
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHM--MVQNPQQWIEPMADANVDQ   90 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl--mv~~p~~~i~~l~~ag~d~   90 (277)
                      .|+..+.+-++.+.+.|+|.  +=+-|  |...|+..+  +.++.+++.+|++++.+|.  -..-...-.-...++|+++
T Consensus       156 ~~~~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~~~--~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~  231 (302)
T 2ftp_A          156 VDPRQVAWVARELQQMGCYE--VSLGDTIGVGTAGATR--RLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAV  231 (302)
T ss_dssp             CCHHHHHHHHHHHHHTTCSE--EEEEESSSCCCHHHHH--HHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCE
T ss_pred             CCHHHHHHHHHHHHHcCCCE--EEEeCCCCCcCHHHHH--HHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCE
Confidence            45566667777777999999  55568  555565333  6788899887789999998  4444444455567789998


Q ss_pred             E
Q psy11600         91 Y   91 (277)
Q Consensus        91 i   91 (277)
                      +
T Consensus       232 v  232 (302)
T 2ftp_A          232 F  232 (302)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=87.55  E-value=1.8  Score=38.87  Aligned_cols=29  Identities=14%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             hhCCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        208 ENYPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       208 ~~~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      ..++++.+.+.|||+.+|+.++.++|+++
T Consensus       240 ~~~~~~~I~ASGGIt~~ni~~~~~aGaD~  268 (299)
T 2jbm_A          240 AQFPSVAVEASGGITLDNLPQFCGPHIDV  268 (299)
T ss_dssp             HHCTTSEEEEESSCCTTTHHHHCCTTCCE
T ss_pred             ccCCCeeEEEECCCCHHHHHHHHHCCCCE
Confidence            34567789999999999999999999986

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=87.55  E-value=13  Score=32.44  Aligned_cols=143  Identities=13%  Similarity=0.093  Sum_probs=81.5

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEE--EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeec---------
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLH--LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV---------   73 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h--~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv---------   73 (277)
                      +.+|..|+..-+...+.++++.+.+.|+|.+=  +|..+. + ++...=.+.++.+|+...++|+-+++-.         
T Consensus        19 ~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~-~-~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~   96 (257)
T 2yr1_A           19 EPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRA-I-DDQERVLATANGLRNIAGEIPILFTIRSEREGGQPIP   96 (257)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTT-T-TCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCS
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccc-c-CcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCC
Confidence            46788999988888887888887777887743  343332 1 1111113456788875338899888853         


Q ss_pred             cCcHHhHHHH---HhcC-CCeEEEeccCCCC--CHHHHHHHHhhCCC----cccc---h--hh---hhHHHHhcCCCeEE
Q psy11600         74 QNPQQWIEPM---ADAN-VDQYTFHVEPVDN--VPQVIRQIKEAGMK----VGQV---L--QD---WIEPMADANVDQYT  135 (277)
Q Consensus        74 ~~p~~~i~~l---~~ag-~d~i~~H~e~~d~--g~~~i~~i~~~~~~----~~d~---p--~~---~i~~~~~~g~d~it  135 (277)
                      .+.++|++.+   .+.| +|++  .+|....  -.++++..++.+.+    .|+.   |  ++   ++..+.+.|||.+=
T Consensus        97 ~~~~~~~~ll~~~~~~g~~d~i--DvEl~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDivK  174 (257)
T 2yr1_A           97 LNEAEVRRLIEAICRSGAIDLV--DYELAYGERIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAK  174 (257)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEE--EEEGGGTTHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCEE--EEECCCChhHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence            2344454444   4557 9999  5554221  22344444444332    2332   4  23   34556677888665


Q ss_pred             eecCCCCChHHHHHHHH
Q psy11600        136 FHVEPVDNVPQVIRQIK  152 (277)
Q Consensus       136 ~H~E~~~~~~~~~~~I~  152 (277)
                      +=.-|. +..+.++.++
T Consensus       175 ia~~a~-s~~D~l~ll~  190 (257)
T 2yr1_A          175 VAVMPK-SPEDVLVLLQ  190 (257)
T ss_dssp             EEECCS-SHHHHHHHHH
T ss_pred             EEeccC-CHHHHHHHHH
Confidence            544321 3556555554

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=87.55  E-value=1.5  Score=39.52  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHh-hCCCCeEEEeCCCCccCHHHh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDEC  275 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~-~~~~~~I~VDGGI~~~~~~~~  275 (277)
                      +-++.+++..|...++|    .++|.+++   .++|++. =--.|.+   +.+++..+ ..++..+++-||||++|++.+
T Consensus       196 ~Av~~ar~~~p~~kIeV----Ev~tl~e~~eAl~aGaDiImLDn~s~---~~l~~av~~~~~~v~leaSGGIt~~~i~~~  268 (300)
T 3l0g_A          196 LAIQRLRKNLKNEYIAI----ECDNISQVEESLSNNVDMILLDNMSI---SEIKKAVDIVNGKSVLEVSGCVNIRNVRNI  268 (300)
T ss_dssp             HHHHHHHHHSSSCCEEE----EESSHHHHHHHHHTTCSEEEEESCCH---HHHHHHHHHHTTSSEEEEESSCCTTTHHHH
T ss_pred             HHHHHHHHhCCCCCEEE----EECCHHHHHHHHHcCCCEEEECCCCH---HHHHHHHHhhcCceEEEEECCCCHHHHHHH
Confidence            34556666666666665    45676665   4466653 0122333   44444333 235788999999999999987


Q ss_pred             hC
Q psy11600        276 AK  277 (277)
Q Consensus       276 ~~  277 (277)
                      ++
T Consensus       269 A~  270 (300)
T 3l0g_A          269 AL  270 (300)
T ss_dssp             HT
T ss_pred             HH
Confidence            64

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}

Probab=87.42  E-value=2.9  Score=36.10  Aligned_cols=85  Identities=13%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeec-----cCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--c---
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMV-----QNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--Q---  117 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv-----~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d---  117 (277)
                      .+|.+..++.+|+..|++++-.  .+     .++.++++.+...|++.+++++...  .+.+++.+++.+..++  -   
T Consensus       147 ~Sf~~~~l~~~~~~~p~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~v~~~~~~G~~v~~wTv~~  222 (258)
T 2o55_A          147 CSFHHEALAHLKALCPDVKITY--LFNYMGQPTPLDFVEQACYGDANGVSMLFHYL--TKEQVCTAHEKGLSVTVWMPWI  222 (258)
T ss_dssp             EESSHHHHHHHHHHCTTCEEEE--ECCTTSCCCCTTHHHHHHHTTCSEEEEEGGGC--CHHHHHHHHHTTCEEEEECCTT
T ss_pred             EeCCHHHHHHHHHHCCCCcEEE--EEeCCCCCCHHHHHHHHHhcCCeEEecChhhc--CHHHHHHHHHCCCEEEEeeCCC
Confidence            3688999999999888876533  22     2355555557778999997776554  4889999998875422  2   


Q ss_pred             --chhhhhHHHHhcCCCeEEe
Q psy11600        118 --VLQDWIEPMADANVDQYTF  136 (277)
Q Consensus       118 --~p~~~i~~~~~~g~d~it~  136 (277)
                        .....+..+.+.|+|.|+-
T Consensus       223 ~~n~~~~~~~l~~~GvdgI~T  243 (258)
T 2o55_A          223 FDDSEEDWKKCLELQVDLICS  243 (258)
T ss_dssp             CCCCHHHHHHHHHHTCSEEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEe
Confidence              2344557788899998775

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=87.30  E-value=3.8  Score=42.74  Aligned_cols=126  Identities=13%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             eEeeeccc-cCcccHHHHHHHHHHcCCCEEEEeccccccccCC--------------CCCHHHHHHHHhcCCCCeeeeee
Q psy11600          7 MIGPSILN-SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL--------------TFGHPVVKCLRNKIPKAFFETHM   71 (277)
Q Consensus         7 ~~~~s~~~-~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~--------------~~g~~~v~~l~~~~~~~~~d~Hl   71 (277)
                      .+..+++. .|...+.+..+.+++.|+|.+-+.+-    .|+.              .+-.+.++++|+. .++|+.+=+
T Consensus       636 ~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~----~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~-~~~Pv~vK~  710 (1025)
T 1gte_A          636 IVIASIMCSYNKNDWMELSRKAEASGADALELNLS----CPHGMGERGMGLACGQDPELVRNICRWVRQA-VQIPFFAKL  710 (1025)
T ss_dssp             EEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----CBCCCC-----SBGGGCHHHHHHHHHHHHHH-CSSCEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCCCCcccccccCHHHHHHHHHHHHHh-hCCceEEEe
Confidence            35567754 47778889999999999999777653    2332              1224588899986 578887755


Q ss_pred             ec--cCcHHhHHHHHhcCCCeEEEe----------------------ccCCCC---C-------HHHHHHHHhhC-CCcc
Q psy11600         72 MV--QNPQQWIEPMADANVDQYTFH----------------------VEPVDN---V-------PQVIRQIKEAG-MKVG  116 (277)
Q Consensus        72 mv--~~p~~~i~~l~~ag~d~i~~H----------------------~e~~d~---g-------~~~i~~i~~~~-~~~~  116 (277)
                      .-  .+..+..+.+.++|+|.+++.                      .-...+   |       ...++++++.. ..|+
T Consensus       711 ~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipv  790 (1025)
T 1gte_A          711 TPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPI  790 (1025)
T ss_dssp             CSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCE
T ss_pred             CCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCE
Confidence            33  234566888899999999882                      111111   2       25788888776 4454


Q ss_pred             cc------hhhhhHHHHhcCCCeEEeec
Q psy11600        117 QV------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus       117 d~------p~~~i~~~~~~g~d~it~H~  138 (277)
                      -.      +++..+.+. +|||.|.+--
T Consensus       791 i~~GGI~s~~da~~~l~-~Ga~~v~vg~  817 (1025)
T 1gte_A          791 LATGGIDSAESGLQFLH-SGASVLQVCS  817 (1025)
T ss_dssp             EEESSCCSHHHHHHHHH-TTCSEEEESH
T ss_pred             EEecCcCCHHHHHHHHH-cCCCEEEEee
Confidence            32      677666665 8999988743

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=87.25  E-value=1.9  Score=40.04  Aligned_cols=87  Identities=8%  Similarity=0.062  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHhcCCCCeeeeeeeccC-------------cHHhHHHHHhcCCCeEEEeccCC---CCCHHHHHHHHhhCC
Q psy11600         50 FGHPVVKCLRNKIPKAFFETHMMVQN-------------PQQWIEPMADANVDQYTFHVEPV---DNVPQVIRQIKEAGM  113 (277)
Q Consensus        50 ~g~~~v~~l~~~~~~~~~d~Hlmv~~-------------p~~~i~~l~~ag~d~i~~H~e~~---d~g~~~i~~i~~~~~  113 (277)
                      |-.++++++|+....-++-+-|-..+             ..+.++.+.++|+|++++|.-..   ..... ++.+|+...
T Consensus       229 ~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~  307 (379)
T 3aty_A          229 LIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYS  307 (379)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCC
T ss_pred             HHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCC
Confidence            33577899998765334444332211             22347778889999998885221   11125 888988876


Q ss_pred             Ccccc-----hhhhhHHHHhcCCCeEEee
Q psy11600        114 KVGQV-----LQDWIEPMADANVDQYTFH  137 (277)
Q Consensus       114 ~~~d~-----p~~~i~~~~~~g~d~it~H  137 (277)
                      .|+-.     |++..+.+.+-+||.|.|=
T Consensus       308 iPvi~~G~it~~~a~~~l~~g~aD~V~ig  336 (379)
T 3aty_A          308 GVKISNLRYDFEEADQQIREGKVDAVAFG  336 (379)
T ss_dssp             SCEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred             CcEEEECCCCHHHHHHHHHcCCCeEEEec
Confidence            65432     5555444444449998883

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*

Probab=87.20  E-value=4.6  Score=34.78  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccC------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCc--ccc-
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQN------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKV--GQV-  118 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~--~d~-  118 (277)
                      .+|.+..++.+|+..|++++-  +....      +...++.....|++.++.++...  .+.+++.+++.+..+  .-+ 
T Consensus       138 ~SF~~~~l~~~~~~~p~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~G~~V~~WTvn  213 (250)
T 3ks6_A          138 SSFLLASMDELWKATTRPRLW--LVSPSVLQQLGPGAVIETAIAHSIHEIGVHIDTA--DAGLMAQVQAAGLDFGCWAAH  213 (250)
T ss_dssp             EESCHHHHHHHHHHCCSCEEE--EECHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGC--CHHHHHHHHHTTCEEEEECCC
T ss_pred             EeCCHHHHHHHHHHCCCCcEE--EEecccccccchhHHHHHHHhcCCCEEecchhhC--CHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999988988753  44332      22344455677999986655443  588999999887653  333 


Q ss_pred             hhhhhHHHHhcCCCeEEe
Q psy11600        119 LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 p~~~i~~~~~~g~d~it~  136 (277)
                      -...+..+.+.|+|.|+-
T Consensus       214 ~~~~~~~l~~~GVDgIiT  231 (250)
T 3ks6_A          214 TPSQITKALDLGVKVFTT  231 (250)
T ss_dssp             SHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHHHcCCCEEEc
Confidence            234566788999999885

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}

Probab=87.14  E-value=5.5  Score=35.42  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcH---------------------HhHHHHHhcCCCeEEEeccCCCCCHHHHH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQ---------------------QWIEPMADANVDQYTFHVEPVDNVPQVIR  106 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~---------------------~~i~~l~~ag~d~i~~H~e~~d~g~~~i~  106 (277)
                      .+|.+..++.+|+..|++++-. |.-..+.                     ...+.+...|++.++.++...  .+.+|+
T Consensus       186 ~SF~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~v~  262 (313)
T 3l12_A          186 HSFDWALLGECRRQAPDLPTSY-LSQLPENADDPGEDSAKPVGPDYDRMTESLPQAVASAGGQLWCPYFLDV--TPELVA  262 (313)
T ss_dssp             EESCHHHHHHHHHHCTTSCEEE-EECCCC-------------CCCTTTCCSCHHHHHHHHTCSEEEEBGGGC--CHHHHH
T ss_pred             EcCCHHHHHHHHHHCCCCcEEE-EeccccccccccccccccccccchhccccHHHHHHHhCCcEEecchhcC--CHHHHH
Confidence            3689999999999888876543 2211110                     113445667899996666544  488999


Q ss_pred             HHHhhCCCc--ccc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhC
Q psy11600        107 QIKEAGMKV--GQV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG  155 (277)
Q Consensus       107 ~i~~~~~~~--~d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g  155 (277)
                      .+++.+..+  .-+ -..-+..+.+.|+|.|+-=     .+..+.+.+++.|
T Consensus       263 ~~~~~Gl~V~~WTVn~~~~~~~l~~~GVDgIiTD-----~P~~~~~~l~~~g  309 (313)
T 3l12_A          263 EAHDLGLIVLTWTVNEPEDIRRMATTGVDGIVTD-----YPGRTQRILIDMG  309 (313)
T ss_dssp             HHHHTTCEEEEBCCCSHHHHHHHHHHTCSEEEES-----CHHHHHHHHHHTT
T ss_pred             HHHHCCCEEEEEcCCCHHHHHHHHHcCCCEEEeC-----CHHHHHHHHHhcC
Confidence            999887653  233 2345677889999998862     4555666666543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=86.86  E-value=1.7  Score=41.64  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      .+..+.++.+.+.|+|.+.+|...|+.-    .-.+.++++|+.+|++++-+- -+..+ +.++.+.++|+|.+.+
T Consensus       228 ~~~~~~a~~l~~aG~d~I~id~a~g~~~----~~~~~v~~i~~~~p~~~Vi~g-~v~t~-e~a~~l~~aGaD~I~v  297 (490)
T 4avf_A          228 ADTGERVAALVAAGVDVVVVDTAHGHSK----GVIERVRWVKQTFPDVQVIGG-NIATA-EAAKALAEAGADAVKV  297 (490)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCCSBH----HHHHHHHHHHHHCTTSEEEEE-EECSH-HHHHHHHHTTCSEEEE
T ss_pred             cchHHHHHHHhhcccceEEecccCCcch----hHHHHHHHHHHHCCCceEEEe-eeCcH-HHHHHHHHcCCCEEEE
Confidence            3456778888899999999998776431    234789999998888877662 23344 5678899999999965

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=86.76  E-value=0.68  Score=41.52  Aligned_cols=74  Identities=15%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             hhhHHHHHhhCCC-ccEEEeCCCCcCcHHH---HHHccCCC-CCcccccCHHHHHH-HHHhhCCCCeEEEeCCCCccCHH
Q psy11600        200 MPKVKWLRENYPT-LNIEVDGGVGPNTIDE---CAKCLTGF-GGQKFMQDMMPKVK-WLRENYPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       200 l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~---~~~~gpg~-ggq~F~~~~~~kI~-~l~~~~~~~~I~VDGGI~~~~~~  273 (277)
                      ..-++.++++.+. ..++|.    +.|.++   ..++|+++ .-..|.++.++++. .++...++..+++-||||++|++
T Consensus       180 ~~av~~ar~~~~~~~~I~VE----V~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~  255 (285)
T 1o4u_A          180 ERAVQEVRKIIPFTTKIEVE----VENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVS  255 (285)
T ss_dssp             HHHHHHHHTTSCTTSCEEEE----ESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGG
T ss_pred             HHHHHHHHHhCCCCceEEEE----eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCceEEEECCCCHHHHH
Confidence            3456677777755 455553    445444   56677876 23345554444433 34444567899999999999999


Q ss_pred             HhhC
Q psy11600        274 ECAK  277 (277)
Q Consensus       274 ~~~~  277 (277)
                      .+++
T Consensus       256 ~~a~  259 (285)
T 1o4u_A          256 LYDF  259 (285)
T ss_dssp             GGCC
T ss_pred             HHHH
Confidence            8753

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=86.73  E-value=2.8  Score=40.09  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCC------eeeeeeecc---CcHHhHHHHHhc
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKA------FFETHMMVQ---NPQQWIEPMADA   86 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~------~~d~Hlmv~---~p~~~i~~l~~a   86 (277)
                      ..+.+.++.+.+.++..+.  |.|  |.++=-++.. ++++...  +|..      .+.+-..+.   +..+.++.+.++
T Consensus       166 ~~l~ea~~~m~~~~i~~lp--VVDe~g~lvGiIT~~-Dil~~~~--~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~a  240 (490)
T 4avf_A          166 TPLEEMKAKLYENRIEKML--VVDENFYLRGLVTFR-DIEKAKT--YPLASKDEQGRLRVGAAVGTGADTGERVAALVAA  240 (490)
T ss_dssp             ----------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHcCCCEEE--EEcCCCcEEEEEehH-Hhhhhcc--CcchhhhccCcceeeeeeccccchHHHHHHHhhc
Confidence            4566777778877777755  344  5554333322 2333222  2332      233333333   345678899999


Q ss_pred             CCCeEEEeccCCCC--CHHHHHHHHhhC-CCccc---c-hhhhhHHHHhcCCCeEEeecC
Q psy11600         87 NVDQYTFHVEPVDN--VPQVIRQIKEAG-MKVGQ---V-LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        87 g~d~i~~H~e~~d~--g~~~i~~i~~~~-~~~~d---~-p~~~i~~~~~~g~d~it~H~E  139 (277)
                      |+|.+.++.-....  ..+.|+++|+.. ..++-   + -.+.+..+.++|||.|.+-..
T Consensus       241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g  300 (490)
T 4avf_A          241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIG  300 (490)
T ss_dssp             TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred             ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCC
Confidence            99999665432211  347788888875 33432   2 456678889999999987443

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}

Probab=86.68  E-value=14  Score=31.53  Aligned_cols=81  Identities=12%  Similarity=0.074  Sum_probs=54.1

Q ss_pred             ceEeeecccc---------CcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeec---
Q psy11600          6 CMIGPSILNS---------DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV---   73 (277)
Q Consensus         6 ~~~~~s~~~~---------d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv---   73 (277)
                      ++|+-|.++.         ....+.+.++.+.+.|.+.  +++. +.+ |    .+..++++.+. .++.+..+...   
T Consensus        10 mklg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~--vEl~-~~~-~----~~~~~~~~l~~-~gl~~~~~~~~~~~   80 (301)
T 3cny_A           10 IKWGIAPIGWRNDDIPSIGKDNNLQQLLSDIVVAGFQG--TEVG-GFF-P----GPEKLNYELKL-RNLEIAGQWFSSYI   80 (301)
T ss_dssp             EEEEECGGGTCCSSSTTTTTTCCHHHHHHHHHHHTCCE--ECCC-TTC-C----CHHHHHHHHHH-TTCEECEEEEEECH
T ss_pred             eeEEeccccccCccccccccCCCHHHHHHHHHHhCCCE--EEec-CCC-C----CHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            5577777766         2357899999999999999  5555 222 3    45556555554 57777776321   


Q ss_pred             ---------cCcHHhHHHHHhcCCCeEEEec
Q psy11600         74 ---------QNPQQWIEPMADANVDQYTFHV   95 (277)
Q Consensus        74 ---------~~p~~~i~~l~~ag~d~i~~H~   95 (277)
                               ....+.++...+.|++++.+|.
T Consensus        81 ~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~  111 (301)
T 3cny_A           81 IRDGIEKASEAFEKHCQYLKAINAPVAVVSE  111 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ChhhHHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence                     1233456666778999999884

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=86.34  E-value=8.8  Score=34.69  Aligned_cols=89  Identities=10%  Similarity=0.137  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc--CCCeEEEeccCC-CCCHHHHHHHHhh----CCC------c
Q psy11600         49 TFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA--NVDQYTFHVEPV-DNVPQVIRQIKEA----GMK------V  115 (277)
Q Consensus        49 ~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a--g~d~i~~H~e~~-d~g~~~i~~i~~~----~~~------~  115 (277)
                      .||.+.++.+.++-+++-+-.+  +.++++.++.+.+.  .+.++=+|.+.. ++|+.+++.+++.    ...      .
T Consensus        70 p~~~~L~~~m~~k~~~LiVALD--~~~~~~al~l~~~l~~~v~~vKvG~~l~~~~G~~~v~~L~~~a~~~g~~IflDlK~  147 (312)
T 3g3d_A           70 PVASKLLRLMQKKETNLCLSAD--VSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKF  147 (312)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECC--CSCHHHHHHHHHHHGGGCSEEEECGGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred             hHHHHHHHHHHHhCCCEEEEeC--CCCHHHHHHHHHHhCCCceEEEEcHHHHHHhCHHHHHHHHHHHhhCCCEEEEECcc
Confidence            4677788888765466544433  44555544443333  467888898864 6799999999873    322      3


Q ss_pred             ccchhhhhHHHH----h--cCCCeEEeecC
Q psy11600        116 GQVLQDWIEPMA----D--ANVDQYTFHVE  139 (277)
Q Consensus       116 ~d~p~~~i~~~~----~--~g~d~it~H~E  139 (277)
                      +|+|...-..+.    +  .++|++|+|.-
T Consensus       148 ~DIpnTv~~a~~~a~~~~a~~aD~vTVHa~  177 (312)
T 3g3d_A          148 ADIGNTVKKQYEGGIFKIASWADLVNAHVV  177 (312)
T ss_dssp             CSCHHHHHHHHHCTTTCHHHHCSEEEEEST
T ss_pred             cccHHHHHHHHHHHHHhhhccCCEEEEccC
Confidence            355655444332    2  36999999975

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=86.20  E-value=7  Score=34.89  Aligned_cols=85  Identities=9%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHH---HHHhcCCCeEEEeccCC------CC-----------CHHHHHHHHhhC
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIE---PMADANVDQYTFHVEPV------DN-----------VPQVIRQIKEAG  112 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~---~l~~ag~d~i~~H~e~~------d~-----------g~~~i~~i~~~~  112 (277)
                      ...+.+. .-.+.++-+-|+-.+|+.+.+   .+.++ +|.|-+|...-      ++           ..++++++++..
T Consensus        48 ~~~~~l~-~~~~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~  125 (318)
T 1vhn_A           48 KTEELLP-QPHERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV  125 (318)
T ss_dssp             HHHHHSC-CTTCTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC
T ss_pred             hHHHhhh-CcCCCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhh
Confidence            4455552 225788999999878887644   44456 99998886532      11           345678888876


Q ss_pred             CCcccc----------hhhhhHHHHhcCCCeEEeecC
Q psy11600        113 MKVGQV----------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus       113 ~~~~d~----------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      ..|+.+          ..++++.+.++|+|.|++|--
T Consensus       126 ~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~  162 (318)
T 1vhn_A          126 SGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTR  162 (318)
T ss_dssp             SSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCC
Confidence            554432          226788889999999999853

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}

Probab=86.02  E-value=3.5  Score=36.55  Aligned_cols=91  Identities=13%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             ccCcccHHHHHHHHHHcCCCEEEEeccccccc------cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH----HhHHHH
Q psy11600         14 NSDLSNLHSESQNLLDSGADYLHLDVMDGTFV------PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ----QWIEPM   83 (277)
Q Consensus        14 ~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv------p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~----~~i~~l   83 (277)
                      +.....+-++++.+.+.|+..+.  +.++++.      |+-..=.++++.+++. +++. -+.+...||.    +.++.+
T Consensus        32 ~r~~e~i~~ei~~l~~~G~~ei~--l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~-~gi~-~ir~~~~~p~~l~~e~l~~l  107 (304)
T 2qgq_A           32 SRSIEDITREVEDLLKEGKKEII--LVAQDTTSYGIDLYRKQALPDLLRRLNSL-NGEF-WIRVMYLHPDHLTEEIISAM  107 (304)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCEEE--EECTTGGGTTHHHHSSCCHHHHHHHHHTS-SSSC-EEEECCCCGGGCCHHHHHHH
T ss_pred             eeCHHHHHHHHHHHHHCCCcEEE--EEeEcccccCCCCCcHHHHHHHHHHHHhc-CCCc-EEEEeeeecccCCHHHHHHH
Confidence            34556777888888888988754  3333221      1111224677778763 5543 3455556664    468889


Q ss_pred             HhcC--CCeEEEeccCCCCCHHHHHHHHh
Q psy11600         84 ADAN--VDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        84 ~~ag--~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      .++|  ++++  |+-.-.+.+.+++.+++
T Consensus       108 ~~~g~~~~~l--~i~lqs~s~~vl~~m~r  134 (304)
T 2qgq_A          108 LELDKVVKYF--DVPVQHGSDKILKLMGR  134 (304)
T ss_dssp             HHCTTBCCEE--ECCCBCSCHHHHHHTTC
T ss_pred             HhCCCCccEE--EEecccCCHHHHHHhCC
Confidence            9999  8888  55444555777776654

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=85.79  E-value=18  Score=31.78  Aligned_cols=155  Identities=13%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCC-C---CHHHHHHHHhhCCCcccc---h---------------hhhhHHHHhcCC
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVD-N---VPQVIRQIKEAGMKVGQV---L---------------QDWIEPMADANV  131 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d-~---g~~~i~~i~~~~~~~~d~---p---------------~~~i~~~~~~g~  131 (277)
                      .+++. +....+.|||+|-+=..... |   +..+++++++....|+-+   |               .+=+..+.++|+
T Consensus         9 ~s~~~-a~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~Ga   87 (256)
T 1twd_A            9 YSMEC-ALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGF   87 (256)
T ss_dssp             SSHHH-HHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHH-HHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCC
Confidence            34443 34567789999944322212 2   888999999987766533   2               223456677777


Q ss_pred             CeEEeecC-CCC--ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600        132 DQYTFHVE-PVD--NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE  208 (277)
Q Consensus       132 d~it~H~E-~~~--~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~  208 (277)
                      |-+-|-.= ++.  +....-+++..++   ++.                      .++.-.|   ....+-.+-++++.+
T Consensus        88 dGvV~G~Lt~dg~iD~~~~~~Li~~a~---~~~----------------------vTFHRAf---D~~~d~~~ale~L~~  139 (256)
T 1twd_A           88 PGLVTGVLDVDGNVDMPRMEKIMAAAG---PLA----------------------VTFHRAF---DMCANPLYTLNNLAE  139 (256)
T ss_dssp             SEEEECCBCTTSSBCHHHHHHHHHHHT---TSE----------------------EEECGGG---GGCSCHHHHHHHHHH
T ss_pred             CEEEEeeECCCCCcCHHHHHHHHHHhC---CCc----------------------EEEECch---hccCCHHHHHHHHHH
Confidence            77777542 111  1223333333321   111                      1221111   001122333555544


Q ss_pred             hCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        209 NYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       209 ~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +  +++-.+       |          -||+.-..+-++.+++|.++...++|.+=||||.+|++++.
T Consensus       140 l--G~~rIL-------T----------SG~~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~  188 (256)
T 1twd_A          140 L--GIARVL-------T----------SGQKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFL  188 (256)
T ss_dssp             H--TCCEEE-------E----------CTTSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHH
T ss_pred             c--CCCEEE-------C----------CCCCCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHH
Confidence            3  233221       1          13444445677888888765447889999999999998764

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=85.75  E-value=13  Score=34.10  Aligned_cols=117  Identities=15%  Similarity=0.070  Sum_probs=76.1

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccc-------------------cC-------------------CCCCHHHHH
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFV-------------------PN-------------------LTFGHPVVK   56 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fv-------------------p~-------------------~~~g~~~v~   56 (277)
                      -|.....+-+++.+++|++.+=++| |..+.                   +|                   -.+..+.|+
T Consensus       132 ~d~~~~~~l~~ra~~aG~~alvlTv-D~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~  210 (352)
T 3sgz_A          132 SDWDFNKQMVQRAEALGFKALVITI-DTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLS  210 (352)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEEEEC-SCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEe-CCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHH
Confidence            3566667778999999999887765 22111                   11                   124557899


Q ss_pred             HHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec--c-CCCCCH---HHHHHHHhhC--CCcccc------hhhh
Q psy11600         57 CLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV--E-PVDNVP---QVIRQIKEAG--MKVGQV------LQDW  122 (277)
Q Consensus        57 ~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~--e-~~d~g~---~~i~~i~~~~--~~~~d~------p~~~  122 (277)
                      ++|+. +++|+-+-.- .++ +..+.+.++|+|.|.++-  - ..++++   ..+.++++..  ..++-.      +.+.
T Consensus       211 ~lr~~-~~~PvivK~v-~~~-e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv  287 (352)
T 3sgz_A          211 LLQSI-TRLPIILKGI-LTK-EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDV  287 (352)
T ss_dssp             HHHHH-CCSCEEEEEE-CSH-HHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHH
T ss_pred             HHHHh-cCCCEEEEec-CcH-HHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHH
Confidence            99986 7888877653 344 567888999999998842  2 124433   4455554432  233322      7888


Q ss_pred             hHHHHhcCCCeEEe
Q psy11600        123 IEPMADANVDQYTF  136 (277)
Q Consensus       123 i~~~~~~g~d~it~  136 (277)
                      ++.++ +||+.+.+
T Consensus       288 ~kaLa-lGA~aV~i  300 (352)
T 3sgz_A          288 LKALA-LGARCIFL  300 (352)
T ss_dssp             HHHHH-TTCSEEEE
T ss_pred             HHHHH-cCCCEEEE
Confidence            88877 79988887

>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*

Probab=85.74  E-value=10  Score=38.35  Aligned_cols=74  Identities=11%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhc---C----CCCeeeeeeeccCcH-HhHHHHHhcC-CCe
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNK---I----PKAFFETHMMVQNPQ-QWIEPMADAN-VDQ   90 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~---~----~~~~~d~Hlmv~~p~-~~i~~l~~ag-~d~   90 (277)
                      +.+.++.|.+.|++|+.+|  |-.++..  ++++.++.+++.   .    ++.++.+|.--.+.. ..++.+.+.+ +|.
T Consensus       188 y~~~l~~L~~aG~~~VQiD--EP~L~~~--l~~~~~~~~~~a~~~l~~~~~~~~i~lhtc~G~~~~~~~~~l~~l~~vd~  263 (765)
T 1u1j_A          188 YKEVITELKAAGATWIQLD--EPVLVMD--LEGQKLQAFTGAYAELESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTA  263 (765)
T ss_dssp             HHHHHHHHHHTTCCEEEEE--CGGGGSC--CCHHHHHHHHHHHHHSTTTTCSSEEEEECCSSCCCHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHHcCCCEEEEc--CCccccC--CCHHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCcchHHHHHHHcCCCCcE
Confidence            4677888999999998777  5445433  244444444322   2    456778888777877 7788888999 999


Q ss_pred             EEEeccCCC
Q psy11600         91 YTFHVEPVD   99 (277)
Q Consensus        91 i~~H~e~~d   99 (277)
                      +  |+|..+
T Consensus       264 l--~lD~v~  270 (765)
T 1u1j_A          264 F--GFDLVR  270 (765)
T ss_dssp             E--EEESSS
T ss_pred             E--EEEecC
Confidence            9  666544

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=85.62  E-value=2.3  Score=38.12  Aligned_cols=69  Identities=19%  Similarity=0.177  Sum_probs=42.5

Q ss_pred             hHHHHHhhCCCccEEEeCCCCcCcHHHHH---HccCCC-CCcccccCHHHHHHHHHh-hCCCCeEEEeCCCCccCHHHhh
Q psy11600        202 KVKWLRENYPTLNIEVDGGVGPNTIDECA---KCLTGF-GGQKFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       202 kI~~l~~~~~~~~i~vdGgV~~~tv~~~~---~~gpg~-ggq~F~~~~~~kI~~l~~-~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      -++.+++..+...++|    ..+|.+++.   ++|+++ -=-.|.+   +.+++..+ ..++..|++-||||++|++.++
T Consensus       188 Av~~ar~~~~~~~IeV----Ev~tl~ea~eAl~aGaD~I~LDn~~~---~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a  260 (287)
T 3tqv_A          188 AVTKAKKLDSNKVVEV----EVTNLDELNQAIAAKADIVMLDNFSG---EDIDIAVSIARGKVALEVSGNIDRNSIVAIA  260 (287)
T ss_dssp             HHHHHHHHCTTSCEEE----EESSHHHHHHHHHTTCSEEEEESCCH---HHHHHHHHHHTTTCEEEEESSCCTTTHHHHH
T ss_pred             HHHHHHhhCCCCcEEE----EeCCHHHHHHHHHcCCCEEEEcCCCH---HHHHHHHHhhcCCceEEEECCCCHHHHHHHH
Confidence            3455565666666665    467776654   456663 1122333   34444333 2357889999999999999876


Q ss_pred             C
Q psy11600        277 K  277 (277)
Q Consensus       277 ~  277 (277)
                      +
T Consensus       261 ~  261 (287)
T 3tqv_A          261 K  261 (287)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=85.42  E-value=14  Score=32.84  Aligned_cols=57  Identities=16%  Similarity=0.025  Sum_probs=35.8

Q ss_pred             hHHHHHhcCCCeEEEeccCC-CC------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE
Q psy11600         79 WIEPMADANVDQYTFHVEPV-DN------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT  135 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~-d~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it  135 (277)
                      ..+.+.+.|||+|=+=.|.. .|            -.++|+.+++....++.+   -.+.++.-.++|+++|-
T Consensus        43 ~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~~~~va~aAl~aGa~iIN  115 (282)
T 1aj0_A           43 HANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIIN  115 (282)
T ss_dssp             HHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCCCHHHHHHHHHcCCCEEE
Confidence            46777888999995555443 22            245666676655555443   45566666777888763

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=85.36  E-value=1.9  Score=36.78  Aligned_cols=114  Identities=10%  Similarity=0.153  Sum_probs=71.5

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV   98 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~   98 (277)
                      +..+-++.+++.|+|++|+==+++.+- .-....+.+++++ . .++|+-+-=-+.++. .++.+.++|+|.+  |+-..
T Consensus        31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~-~~~~~~~~i~~i~-~-~~ipvi~~Ggi~~~~-~~~~~~~~Gad~V--~lg~~  104 (241)
T 1qo2_A           31 DPVELVEKLIEEGFTLIHVVDLSNAIE-NSGENLPVLEKLS-E-FAEHIQIGGGIRSLD-YAEKLRKLGYRRQ--IVSSK  104 (241)
T ss_dssp             CHHHHHHHHHHTTCCCEEEEEHHHHHH-CCCTTHHHHHHGG-G-GGGGEEEESSCCSHH-HHHHHHHTTCCEE--EECHH
T ss_pred             CHHHHHHHHHHcCCCEEEEeccccccc-CCchhHHHHHHHH-h-cCCcEEEECCCCCHH-HHHHHHHCCCCEE--EECch
Confidence            556677888999999999732223221 1123467788887 5 567766644454554 5666778999999  54332


Q ss_pred             C-CCHHHHHHHHhhCCC---cccc-----------------hhhhhHHHHhcCCCeEEeec
Q psy11600         99 D-NVPQVIRQIKEAGMK---VGQV-----------------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        99 d-~g~~~i~~i~~~~~~---~~d~-----------------p~~~i~~~~~~g~d~it~H~  138 (277)
                      . ..|+.++.+++....   .+++                 +.++++.+.++|++.|.+|.
T Consensus       105 ~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~  165 (241)
T 1qo2_A          105 VLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTE  165 (241)
T ss_dssp             HHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEE
T ss_pred             HhhChHHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEe
Confidence            1 135566677333311   1222                 45677888899999999985

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=85.27  E-value=6.3  Score=37.90  Aligned_cols=62  Identities=8%  Similarity=0.122  Sum_probs=34.8

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC-------CHHHHHHHHhhCCC-------cccc-------hhhhhHHHHhcCCCe
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN-------VPQVIRQIKEAGMK-------VGQV-------LQDWIEPMADANVDQ  133 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~-------g~~~i~~i~~~~~~-------~~d~-------p~~~i~~~~~~g~d~  133 (277)
                      .+.+.++.+.+.+...+  ++--.+|       -.++++.+......       .+-+       ..+.++.+.++|+|.
T Consensus       194 ~l~eal~~m~~~~i~~l--pVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~  271 (511)
T 3usb_A          194 TLSEAEKILQKYKIEKL--PLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDA  271 (511)
T ss_dssp             CHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSE
T ss_pred             CHHHHHHHHHHcCCCEE--EEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccce
Confidence            45667888888888877  3321222       34555555442111       1100       245566777788887


Q ss_pred             EEeec
Q psy11600        134 YTFHV  138 (277)
Q Consensus       134 it~H~  138 (277)
                      +.+..
T Consensus       272 I~Id~  276 (511)
T 3usb_A          272 IVLDT  276 (511)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            77754

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=84.86  E-value=1.5  Score=38.59  Aligned_cols=171  Identities=11%  Similarity=0.113  Sum_probs=100.3

Q ss_pred             eeeeeeccCcHHhHHHHHhcC--CCeEEEeccCC-CCCHHHHHHHHhhCCC-cc-----cch---hhhhHHHHhcCCCeE
Q psy11600         67 FETHMMVQNPQQWIEPMADAN--VDQYTFHVEPV-DNVPQVIRQIKEAGMK-VG-----QVL---QDWIEPMADANVDQY  134 (277)
Q Consensus        67 ~d~Hlmv~~p~~~i~~l~~ag--~d~i~~H~e~~-d~g~~~i~~i~~~~~~-~~-----d~p---~~~i~~~~~~g~d~i  134 (277)
                      +-+=|=+.+.++.++.+.+.+  ++++=+|.+.. ..|+++++++|+.... ..     |+|   ..+++.+.++|+|++
T Consensus        30 LivALD~~~~~~al~l~~~l~~~v~~~KvG~~l~~~~G~~~v~~Lk~~g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~v  109 (255)
T 3ldv_A           30 VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMV  109 (255)
T ss_dssp             EEEEECCSSHHHHHHHHTTSCGGGCEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEE
T ss_pred             eEEEcCCCCHHHHHHHHHHhCCcCcEEEeCHHHHHhhCHHHHHHHHhcCCCEEEEEecccchhHHHHHHHHHHhcCCCEE
Confidence            444455567777777666654  45777787753 4599999999987543 33     444   667889999999999


Q ss_pred             EeecCCCCChHHHHHHHHH-h---CC--ccceeeCCCCCHHh---------------HHHHHh---hcCceEEEEecCCC
Q psy11600        135 TFHVEPVDNVPQVIRQIKE-A---GM--KVGLAIKPKTPVDV---------------IAEYIE---SADLVLIMTVEPGF  190 (277)
Q Consensus       135 t~H~E~~~~~~~~~~~I~~-~---g~--~~g~~i~p~t~~~~---------------i~~~i~---~~d~vl~mav~Pgt  190 (277)
                      |+|.-   .-.+.++...+ .   |.  ...+|+-.-|+.+.               +..+.+   ..+. .++...|  
T Consensus       110 TVh~~---~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~~l~~~g~~~~~~~~V~~~A~~a~~aG~-~GvV~sa--  183 (255)
T 3ldv_A          110 NVHAS---GGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGL-DGVVCSA--  183 (255)
T ss_dssp             EEEGG---GCHHHHHHHHHHHGGGGGGSCEEEEECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHTTC-SEEECCH--
T ss_pred             EEecc---CCHHHHHHHHHHHhhcCCCCceEEEEEEEecCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-CEEEECH--
Confidence            99985   22333332222 1   11  12345444444431               111111   1111 1111111  


Q ss_pred             CCchhhhhhhhhHHHHHhhC-CCccEEEeCCCCc-----------CcHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        191 GGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGP-----------NTIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       191 ~gq~~~~~~l~kI~~l~~~~-~~~~i~vdGgV~~-----------~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                                ..++.+|+.. +++ +.|-+||..           +|..++.++|+++   |...|. ++..+.++++++
T Consensus       184 ----------~e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~  252 (255)
T 3ldv_A          184 ----------QEASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINS  252 (255)
T ss_dssp             ----------HHHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHH
T ss_pred             ----------HHHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHHHHHHH
Confidence                      1355555543 345 445577754           5788899999997   777777 477888887775

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=84.74  E-value=1.3  Score=39.27  Aligned_cols=92  Identities=12%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHH-HHHHHHhcC--CCCeeeeeeeccCcHHhHHH-H
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHP-VVKCLRNKI--PKAFFETHMMVQNPQQWIEP-M   83 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~-~v~~l~~~~--~~~~~d~Hlmv~~p~~~i~~-l   83 (277)
                      +=++++|..+.++.++.+++.+ ++  +++.-  -.|.  ..+|++ .++.|++..  +++++-.+++..|..+.+.. +
T Consensus        31 ~LiVALD~~~~~~al~l~~~l~-~~--v~~~KvG~~l~--~~~G~~~~v~~L~~l~~~~g~~IflDlK~~DIpnTv~~~y  105 (267)
T 3gdm_A           31 NLCASLDVRTTKELLELVEALG-PK--ICLLKTHVDIL--TDFSMEGTVKPLKALSAKYNFLLFEDRRFADIGNTVKLQY  105 (267)
T ss_dssp             CEEEECCCSCHHHHHHHHHHHG-GG--CSEEEECGGGC--SSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHhC-Cc--CcEEEECHHHH--HhcCHHHHHHHHHHHHhhcCCeEEEEeccccchHHHHHHH
Confidence            4467899999999888888763 33  45555  2233  358988 888877521  57899999999998888764 2


Q ss_pred             -------HhcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         84 -------ADANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        84 -------~~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                             .+ ++|++|+|.-   +|+..+++.++
T Consensus       106 ~~a~~~~~~-~ad~vTVH~~---~G~~~~~aa~~  135 (267)
T 3gdm_A          106 SAGVYRIAE-WADITNAHGV---VGPGIVSGLKQ  135 (267)
T ss_dssp             HSTTTCHHH-HCSEEEEEGG---GCTHHHHHHHH
T ss_pred             HHHHHHHHh-hCCEEEEecc---CCHHHHHHHHH
Confidence                   23 4799999963   45566666554

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=84.71  E-value=7.3  Score=34.51  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             HHHHHHHcCCCEEEEeccc-ccc-----ccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE
Q psy11600         23 ESQNLLDSGADYLHLDVMD-GTF-----VPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF   93 (277)
Q Consensus        23 ~~~~l~~~~~~~~h~DimD-g~f-----vp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~   93 (277)
                      -++.|.+.|+++     ++ |.|     +|.+.-....++.+++ .++.++.+.+  .+ .+.++...++|++++++
T Consensus        32 i~~~L~~~Gv~~-----IE~g~~~~~~~~p~~~d~~~~~~~~~~-~~~~~~~~l~--~~-~~~i~~a~~ag~~~v~i   99 (298)
T 2cw6_A           32 LIDMLSEAGLSV-----IETTSFVSPKWVPQMGDHTEVLKGIQK-FPGINYPVLT--PN-LKGFEAAVAAGAKEVVI   99 (298)
T ss_dssp             HHHHHHHTTCSE-----ECCEECCCTTTCGGGTTHHHHHHHSCC-CTTCBCCEEC--CS-HHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHcCcCE-----EEECCCcCcccccccCCHHHHHHHHhh-CCCCEEEEEc--CC-HHhHHHHHHCCCCEEEE
Confidence            355677777665     45 444     4544322345666665 4676666533  34 45688999999999955

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=84.53  E-value=3.3  Score=38.67  Aligned_cols=118  Identities=13%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             cHHHHHHHHHHcCCCEEEEecccc--------------------ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC---
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDG--------------------TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN---   75 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg--------------------~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~---   75 (277)
                      .+.+..++++++|.|.+-+..--|                    .+-....|-.++|+++|+.++.-++-+-|-..+   
T Consensus       172 ~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~  251 (402)
T 2hsa_B          172 DYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHL  251 (402)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCST
T ss_pred             HHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            556677788889999944433211                    111123344688999998865336666554321   


Q ss_pred             ----------cHHhHHHHHhcC------CCeEEEeccCCCC-----------C---HHHHHHHHhhCCCcccc-----hh
Q psy11600         76 ----------PQQWIEPMADAN------VDQYTFHVEPVDN-----------V---PQVIRQIKEAGMKVGQV-----LQ  120 (277)
Q Consensus        76 ----------p~~~i~~l~~ag------~d~i~~H~e~~d~-----------g---~~~i~~i~~~~~~~~d~-----p~  120 (277)
                                ..+.++.+.++|      +|++++|.-..+.           +   ..+++.+|+....|+-.     |+
T Consensus       252 g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i~~~  331 (402)
T 2hsa_B          252 DAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGYTRE  331 (402)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCCCHH
Confidence                      233477888899      9999888432110           1   24577788876655432     55


Q ss_pred             hhhHHHHhcCCCeEEe
Q psy11600        121 DWIEPMADANVDQYTF  136 (277)
Q Consensus       121 ~~i~~~~~~g~d~it~  136 (277)
                      ...+.+.+-+||.|.|
T Consensus       332 ~a~~~l~~g~aD~V~i  347 (402)
T 2hsa_B          332 LGIEAVAQGDADLVSY  347 (402)
T ss_dssp             HHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHCCCCceeee
Confidence            4444444444899888

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=84.43  E-value=14  Score=32.10  Aligned_cols=121  Identities=13%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             eee--ccccCcccHHHHHHHHHHcCCCEEEEec-cccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          9 GPS--ILNSDLSNLHSESQNLLDSGADYLHLDV-MDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         9 ~~s--~~~~d~~~l~~~~~~l~~~~~~~~h~Di-mDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      |||  .+.-|+ +..+-.+..++. +..  +-| -|..|.   .=+...++++|+. .++|+..-=.+-++. ++.....
T Consensus        51 SPSkG~i~~~~-~~~~iA~~y~~~-A~~--IsVlTd~~~F---~gs~~dL~~ir~~-v~lPvLrKDfi~~~~-qi~ea~~  121 (251)
T 1i4n_A           51 SPSAGDINADA-SLEDFIRMYDEL-ADA--ISILTEKHYF---KGDPAFVRAARNL-TCRPILAKDFYIDTV-QVKLASS  121 (251)
T ss_dssp             CSSSCBSCTTC-CHHHHHHHHHHH-CSE--EEEECCCSSS---CCCTHHHHHHHTT-CCSCEEEECCCCSTH-HHHHHHH
T ss_pred             CCCCCccCCCC-CHHHHHHHHHHh-CCc--eEEEeccccc---CCCHHHHHHHHHh-CCCCEEEeeCCCCHH-HHHHHHH
Confidence            666  233322 444444445554 555  444 466663   2366889999985 788887655666676 4666889


Q ss_pred             cCCCeEEEeccCCCC--CHHHHHHHHhhCCC-cccc-hhhhhHHHHhc-CCCeEEeec
Q psy11600         86 ANVDQYTFHVEPVDN--VPQVIRQIKEAGMK-VGQV-LQDWIEPMADA-NVDQYTFHV  138 (277)
Q Consensus        86 ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~-~~d~-p~~~i~~~~~~-g~d~it~H~  138 (277)
                      +|||.+.+-.-..+.  -..+++..++.+.. .+++ -.+=++...++ |+++|.++.
T Consensus       122 ~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinn  179 (251)
T 1i4n_A          122 VGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINT  179 (251)
T ss_dssp             TTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEEC
T ss_pred             cCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC
Confidence            999999766554331  23344444444433 2333 22225666778 999999875

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=84.29  E-value=18  Score=32.25  Aligned_cols=105  Identities=8%  Similarity=-0.020  Sum_probs=69.4

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-   95 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-   95 (277)
                      ...+.+.++.+.+.|+|.+++..-+    |     .+.++.+++.  ++++-.  .+.++. ......++|+|.+.++- 
T Consensus        82 ~~~~~~~~~~~~~~g~d~V~~~~g~----p-----~~~~~~l~~~--gi~vi~--~v~t~~-~a~~~~~~GaD~i~v~g~  147 (328)
T 2gjl_A           82 PVPYAEYRAAIIEAGIRVVETAGND----P-----GEHIAEFRRH--GVKVIH--KCTAVR-HALKAERLGVDAVSIDGF  147 (328)
T ss_dssp             CCCHHHHHHHHHHTTCCEEEEEESC----C-----HHHHHHHHHT--TCEEEE--EESSHH-HHHHHHHTTCSEEEEECT
T ss_pred             CccHHHHHHHHHhcCCCEEEEcCCC----c-----HHHHHHHHHc--CCCEEe--eCCCHH-HHHHHHHcCCCEEEEECC
Confidence            3457789999999999998876421    2     6888999874  555543  345554 56677889999998752 


Q ss_pred             cCC--C-----CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         96 EPV--D-----NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        96 e~~--d-----~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      +..  .     .....++++++....|+-+      |++..+.+ ++|||.+.+
T Consensus       148 ~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al-~~GAdgV~v  200 (328)
T 2gjl_A          148 ECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAAL-ALGADAINM  200 (328)
T ss_dssp             TCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HHTCSEEEE
T ss_pred             CCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEE
Confidence            211  0     1345778887766555533      55554444 479998876

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=84.28  E-value=9.9  Score=34.41  Aligned_cols=98  Identities=16%  Similarity=0.153  Sum_probs=56.1

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccC--CCCC------HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCC
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPN--LTFG------HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANV   88 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~--~~~g------~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~   88 (277)
                      ....-+..+++.+.|+|.  +||==-..=|+  ++-.      .+.|+.+++.++++++.++  +.+++ .++...++|+
T Consensus        64 ~~~a~~~A~~~v~~GAdI--IDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISID--T~~~~-VaeaAl~aGa  138 (318)
T 2vp8_A           64 DAAARDAVHRAVADGADV--IDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVD--TWRAQ-VAKAACAAGA  138 (318)
T ss_dssp             CHHHHHHHHHHHHTTCSE--EEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEE--CSCHH-HHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCCE--EEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEe--CCCHH-HHHHHHHhCC
Confidence            334444556677789999  78752111122  1111      2347777876568887664  44554 4556666799


Q ss_pred             CeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecC
Q psy11600         89 DQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        89 d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E  139 (277)
                      ++|   -|+.-+                . -...++..+++|+.+|.+|..
T Consensus       139 ~iI---NDVsg~----------------~-d~~m~~vaa~~g~~vVlmh~~  169 (318)
T 2vp8_A          139 DLI---NDTWGG----------------V-DPAMPEVAAEFGAGLVCAHTG  169 (318)
T ss_dssp             CEE---EETTSS----------------S-STTHHHHHHHHTCEEEEECC-
T ss_pred             CEE---EECCCC----------------C-chHHHHHHHHhCCCEEEECCC
Confidence            988   233211                0 124566778999999999974

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=84.12  E-value=4.3  Score=38.70  Aligned_cols=112  Identities=21%  Similarity=0.309  Sum_probs=68.5

Q ss_pred             HHHHHHcCCCEEEEecccc-ccccCCCC---C-HHHHHHHHhcCCCCeeeeeeeccC-------c----HHhHHHHHhcC
Q psy11600         24 SQNLLDSGADYLHLDVMDG-TFVPNLTF---G-HPVVKCLRNKIPKAFFETHMMVQN-------P----QQWIEPMADAN   87 (277)
Q Consensus        24 ~~~l~~~~~~~~h~DimDg-~fvp~~~~---g-~~~v~~l~~~~~~~~~d~Hlmv~~-------p----~~~i~~l~~ag   87 (277)
                      ++.|.+.|+++  +.+--| +|+.++.|   . .+.++.+++..|+.++.+.+-..|       |    ...++...++|
T Consensus        36 a~~L~~~Gv~~--IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~G  113 (464)
T 2nx9_A           36 AQQLDQIGYWS--LECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNG  113 (464)
T ss_dssp             HHHHHTSCCSE--EEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCE--EEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHHHHhCC
Confidence            34566678887  444221 14433222   2 367888888778877776653222       2    34578888999


Q ss_pred             CCeEEEeccCCCC--CHHHHHHHHhhCCCc---c---cc----h---hhhhHHHHhcCCCeEEee
Q psy11600         88 VDQYTFHVEPVDN--VPQVIRQIKEAGMKV---G---QV----L---QDWIEPMADANVDQYTFH  137 (277)
Q Consensus        88 ~d~i~~H~e~~d~--g~~~i~~i~~~~~~~---~---d~----p---~~~i~~~~~~g~d~it~H  137 (277)
                      ++.+++-.-..+.  ....++.+|+.+..+   +   +-    |   .+.++.+.++||+.|++-
T Consensus       114 vd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~  178 (464)
T 2nx9_A          114 MDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALK  178 (464)
T ss_dssp             CCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence            9999544322332  456777778776542   1   11    3   445577889999999884

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=83.96  E-value=6.5  Score=33.90  Aligned_cols=171  Identities=18%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             eeeccCcHH-----hHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-hhhhhHHHHhcCCCeEEeec
Q psy11600         70 HMMVQNPQQ-----WIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        70 Hlmv~~p~~-----~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-p~~~i~~~~~~g~d~it~H~  138 (277)
                      |+..-+|.+     .++.+.++|+|.|  -+--.+|     ..++++++|+ +..|+-. |-. .+.+.. |+|.+.|-.
T Consensus         9 h~~~iDPdk~~~~~~~~~~~~~GtD~i--~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvlfp~~-~~~v~~-gaD~~l~ps   83 (228)
T 3vzx_A            9 HVFKLDPNKDLPDEQLEILCESGTDAV--IIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSA-IEAIVP-GFDLYFIPS   83 (228)
T ss_dssp             EEEEECTTSCCCTTHHHHHHTSSCSEE--EECCCSCCCHHHHHHHHHHHTT-SSSCEEEECSC-GGGCCS-CCSEEEEEE
T ss_pred             EEEeECCCCCCCHHHHHHHHHcCCCEE--EECCcCCCCHHHHHHHHHHhhc-cCCCEEEeCCC-HHHccc-cCCEEEEee


Q ss_pred             CCCCChHHHH-----HHHHHhCC-----ccce----eeCCCCCH------------HhHHHHHhhc-----CceEEEEec
Q psy11600        139 EPVDNVPQVI-----RQIKEAGM-----KVGL----AIKPKTPV------------DVIAEYIESA-----DLVLIMTVE  187 (277)
Q Consensus       139 E~~~~~~~~~-----~~I~~~g~-----~~g~----~i~p~t~~------------~~i~~~i~~~-----d~vl~mav~  187 (277)
                      =+-..-...+     +.+++.|.     ..=-    -++|+++.            +.+..|....     +++-.-+  
T Consensus        84 lln~~~~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~VYld~--  161 (228)
T 3vzx_A           84 VLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY--  161 (228)
T ss_dssp             ETTBSSGGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC--
T ss_pred             ecCCCCcchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEEEecC--


Q ss_pred             CCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        188 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       188 Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      -|+.+.      .+.++++++....+-+.+=||| +.++++++. .|++.   |+.... ++..++.-+.-+
T Consensus       162 sG~~~~------~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~~~~~~v~a~~  226 (228)
T 3vzx_A          162 SGVLGD------IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDRALKTVAAVK  226 (228)
T ss_dssp             TTSCCC------HHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCC------HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHHHHHHHHHHHh

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=83.95  E-value=18  Score=30.37  Aligned_cols=89  Identities=9%  Similarity=0.080  Sum_probs=52.5

Q ss_pred             CCceEeeeccccCcccHHHHHHHHHHcCCCEEEEecccccccc--------CCCCCHHHHHHHHhcC--CCCeeeeeeec
Q psy11600          4 VQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVP--------NLTFGHPVVKCLRNKI--PKAFFETHMMV   73 (277)
Q Consensus         4 ~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp--------~~~~g~~~v~~l~~~~--~~~~~d~Hlmv   73 (277)
                      .+++|+-|.++.-...+.+.++.+.+.|.+.  +.+.-....+        ...+.+..++++|+..  .++.+..|-..
T Consensus         8 ~~mklg~~~~~~~~~~~~~~l~~~~~~G~~~--vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~   85 (262)
T 3p6l_A            8 NGWRLGMQSYSFHLFPLTEALDKTQELGLKY--IEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVY   85 (262)
T ss_dssp             TTEEEEEEGGGGTTSCHHHHHHHHHHTTCCE--EEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cCcEEEEEecccCCCCHHHHHHHHHHcCCCE--EeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc
Confidence            3578999999987789999999999999999  4444322100        1234444444444321  35555444322


Q ss_pred             c-----CcHHhHHHHHhcCCCeEEEe
Q psy11600         74 Q-----NPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        74 ~-----~p~~~i~~l~~ag~d~i~~H   94 (277)
                      .     +..+.++...+.|++++.+|
T Consensus        86 ~~~~~~~~~~~i~~A~~lGa~~v~~~  111 (262)
T 3p6l_A           86 VAEKSSDWEKMFKFAKAMDLEFITCE  111 (262)
T ss_dssp             CCSSTTHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCccHHHHHHHHHHHHHcCCCEEEec
Confidence            1     23334555555666666666

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=83.84  E-value=2.1  Score=42.26  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccc------cc-c---------------CCCCCHHHHHHHHhcCC-CCeeeeeeecc-
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGT------FV-P---------------NLTFGHPVVKCLRNKIP-KAFFETHMMVQ-   74 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~------fv-p---------------~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~-   74 (277)
                      .+.+..++++++|.|.  ++|-=++      |. |               ...|-.++++++|+..+ +.++-+-|-.. 
T Consensus       142 ~~~~aA~~a~~aGfd~--veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~  219 (671)
T 1ps9_A          142 NFARCAQLAREAGYDG--VEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLD  219 (671)
T ss_dssp             HHHHHHHHHHHTTCSE--EEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCE--EEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccc
Confidence            4566777788899999  4543222      11 2               12334788999998753 66665533221 


Q ss_pred             ---------CcHHhHHHHHhcCCCeEEEec---cCC-C---------CCHHHHHHHHhhCCCcccc------hhhhhHHH
Q psy11600         75 ---------NPQQWIEPMADANVDQYTFHV---EPV-D---------NVPQVIRQIKEAGMKVGQV------LQDWIEPM  126 (277)
Q Consensus        75 ---------~p~~~i~~l~~ag~d~i~~H~---e~~-d---------~g~~~i~~i~~~~~~~~d~------p~~~i~~~  126 (277)
                               +..+.++.+.++|+|++++|.   +.. .         .....++.+|+....|+-.      |++..+.+
T Consensus       220 ~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l  299 (671)
T 1ps9_A          220 LVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDIL  299 (671)
T ss_dssp             CSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH
Confidence                     223457788899999998873   210 0         1246788888887665532      55554444


Q ss_pred             HhcCCCeEEee
Q psy11600        127 ADANVDQYTFH  137 (277)
Q Consensus       127 ~~~g~d~it~H  137 (277)
                      .+-+||.|.|=
T Consensus       300 ~~g~aD~V~~g  310 (671)
T 1ps9_A          300 SRGDADMVSMA  310 (671)
T ss_dssp             HTTSCSEEEES
T ss_pred             HcCCCCEEEeC
Confidence            44449999984

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=83.46  E-value=9.7  Score=36.04  Aligned_cols=72  Identities=10%  Similarity=0.053  Sum_probs=44.0

Q ss_pred             CCe-eeeeeecc----CcHHhHHHHHhcCCCeEEEeccCC-----------CC---C-------HHHHHHHHhhC--CCc
Q psy11600         64 KAF-FETHMMVQ----NPQQWIEPMADANVDQYTFHVEPV-----------DN---V-------PQVIRQIKEAG--MKV  115 (277)
Q Consensus        64 ~~~-~d~Hlmv~----~p~~~i~~l~~ag~d~i~~H~e~~-----------d~---g-------~~~i~~i~~~~--~~~  115 (277)
                      ++| +.+=+-..    +..+..+.+.++|+|.|++|--..           .+   |       ..+++++++..  ..|
T Consensus       296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP  375 (443)
T 1tv5_A          296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP  375 (443)
T ss_dssp             SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence            556 55554322    233347788899999999885321           11   3       25688888876  445


Q ss_pred             ccc------hhhhhHHHHhcCCCeEEe
Q psy11600        116 GQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       116 ~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      +-.      +++..+.+ .+|||.|-+
T Consensus       376 VIg~GGI~s~~DA~e~l-~aGAd~Vqi  401 (443)
T 1tv5_A          376 IIASGGIFSGLDALEKI-EAGASVCQL  401 (443)
T ss_dssp             EEEESSCCSHHHHHHHH-HTTEEEEEE
T ss_pred             EEEECCCCCHHHHHHHH-HcCCCEEEE
Confidence            422      66655555 478888776

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=83.41  E-value=1.6  Score=40.42  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             hhhhHHHHhcCCCeEEeecCCCCChH---HHHHHHHHh--CCccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCc
Q psy11600        120 QDWIEPMADANVDQYTFHVEPVDNVP---QVIRQIKEA--GMKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQ  193 (277)
Q Consensus       120 ~~~i~~~~~~g~d~it~H~E~~~~~~---~~~~~I~~~--g~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq  193 (277)
                      .++++.+.++|+|.|++|.... ...   +.++.+++.  +.....+ +.. +.+....+.+ -+|.+.+ +..||....
T Consensus       102 ~e~~~~a~~aGvdvI~id~a~G-~~~~~~e~I~~ir~~~~~~~Vi~G-~V~-T~e~A~~a~~aGaD~I~V-g~g~G~~~~  177 (361)
T 3r2g_A          102 LQRAEALRDAGADFFCVDVAHA-HAKYVGKTLKSLRQLLGSRCIMAG-NVA-TYAGADYLASCGADIIKA-GIGGGSVCS  177 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCC-SSHHHHHHHHHHHHHHTTCEEEEE-EEC-SHHHHHHHHHTTCSEEEE-CCSSSSCHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCC-CcHhHHHHHHHHHHhcCCCeEEEc-CcC-CHHHHHHHHHcCCCEEEE-cCCCCcCcc
Confidence            5678999999999999975311 222   455666654  3222221 233 3444444443 3777765 666654210


Q ss_pred             h-----hhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        194 K-----FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       194 ~-----~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      .     +-.+.+..|.++.+...  .+..||||. ...+..+.++|++.
T Consensus       178 tr~~~g~g~p~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~GAd~  224 (361)
T 3r2g_A          178 TRIKTGFGVPMLTCIQDCSRADR--SIVADGGIKTSGDIVKALAFGADF  224 (361)
T ss_dssp             HHHHHCCCCCHHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             ccccCCccHHHHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHcCCCE
Confidence            0     00113344444433222  788999995 67788888889885

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=83.39  E-value=5.2  Score=35.79  Aligned_cols=128  Identities=13%  Similarity=0.164  Sum_probs=94.9

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee---------------ecc
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM---------------MVQ   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl---------------mv~   74 (277)
                      |=.+..|-..-.+.+.+..+.|..++=+|--.-+|-.|+...-++++.-++.  ++.+++=|               ...
T Consensus        82 PValHlDHg~~~e~i~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~--gvsVEaElG~vgG~Ed~~~~~~~~yT  159 (288)
T 3q94_A           82 PVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHAR--NVSVEAELGTVGGQEDDVIAEGVIYA  159 (288)
T ss_dssp             CEEEEEEEECSHHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTT--TCEEEEEESBCBCSCSSCGGGGCBCC
T ss_pred             cEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeccccCCcCCccccCC
Confidence            4456667775556777777789999888887777888888888888877753  55555421               356


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++-.+.+.+.|+|++.+=+-..-|        -++.+++|++....|+-+      |++-+...+++|+.-|-+..|
T Consensus       160 ~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Td  238 (288)
T 3q94_A          160 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTE  238 (288)
T ss_dssp             CHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCSCEEECCCTTCCHHHHHHHHHTTEEEEEECHH
T ss_pred             CHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChH
Confidence            89888887778999999665443322        788999999987665432      999999999999988888554

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=83.37  E-value=2.7  Score=36.47  Aligned_cols=111  Identities=12%  Similarity=0.018  Sum_probs=62.2

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC--CCCeeeeeeec--------cCc---HHhHHHHHhcC
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI--PKAFFETHMMV--------QNP---QQWIEPMADAN   87 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~--~~~~~d~Hlmv--------~~p---~~~i~~l~~ag   87 (277)
                      .++++.+.+.|++.+=+.+.+|..-  ...-.+.++++++..  -++++.+-...        .++   .+..+...++|
T Consensus       102 ~~~v~~a~~~Ga~~v~~~l~~~~~~--~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~G  179 (273)
T 2qjg_A          102 VTTVEEAIRMGADAVSIHVNVGSDE--DWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELG  179 (273)
T ss_dssp             CSCHHHHHHTTCSEEEEEEEETSTT--HHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEEEEecCCCC--HHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcC
Confidence            4677778889999964455565321  000001222332210  14555543210        122   22236778899


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccc--------hhhh---hHHHHhcCCCeEEe
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQV--------LQDW---IEPMADANVDQYTF  136 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~--------p~~~---i~~~~~~g~d~it~  136 (277)
                      +|++.+++   ..+++.++++++....|+-.        ++++   +..+.++|++.+.+
T Consensus       180 ad~i~~~~---~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v  236 (273)
T 2qjg_A          180 ADIVKTSY---TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV  236 (273)
T ss_dssp             CSEEEECC---CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred             CCEEEECC---CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            99999985   35788899998876555432        2232   45555778877765

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=83.21  E-value=15  Score=36.85  Aligned_cols=75  Identities=16%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             HHHHHHHHHcCCCEEEEecccc-cc---ccCCCCCH-HHHHHHHhcCCCCeeeeeeecc-------Cc----HHhHHHHH
Q psy11600         21 HSESQNLLDSGADYLHLDVMDG-TF---VPNLTFGH-PVVKCLRNKIPKAFFETHMMVQ-------NP----QQWIEPMA   84 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg-~f---vp~~~~g~-~~v~~l~~~~~~~~~d~Hlmv~-------~p----~~~i~~l~   84 (277)
                      -+-.+.|.+.|+++.++.+-=| +|   .|-.+-+| +.++.+++..|+.++-.++-..       .|    ...++...
T Consensus       128 l~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~~i~~a~  207 (718)
T 3bg3_A          128 KKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAK  207 (718)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHHHHHHHH
Confidence            3445556666666544554211 21   11123355 6788999888888876666331       22    34678888


Q ss_pred             hcCCCeEEEec
Q psy11600         85 DANVDQYTFHV   95 (277)
Q Consensus        85 ~ag~d~i~~H~   95 (277)
                      ++|++.+++..
T Consensus       208 ~~Gvd~irIf~  218 (718)
T 3bg3_A          208 ENGMDVFRVFD  218 (718)
T ss_dssp             HHTCCEEEEEC
T ss_pred             hcCcCEEEEEe
Confidence            89999986653

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=83.17  E-value=8.4  Score=35.52  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=37.6

Q ss_pred             HHHHHHHHcCCCEEEEeccccccccCCCCCH---HHHHHHHhcCCCCeeeeeeeccCcHHhHHHH----HhcCCCeEEEe
Q psy11600         22 SESQNLLDSGADYLHLDVMDGTFVPNLTFGH---PVVKCLRNKIPKAFFETHMMVQNPQQWIEPM----ADANVDQYTFH   94 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~---~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l----~~ag~d~i~~H   94 (277)
                      +-++.|.+.|+++     ++..| |-  .++   +.++++++..++..+-+..-. +. +.++..    ..+|++.+++.
T Consensus        38 ~ia~~L~~~Gv~~-----IE~g~-p~--~~~~d~e~v~~i~~~~~~~~i~~l~r~-~~-~di~~a~~al~~ag~~~v~if  107 (370)
T 3rmj_A           38 RVARQLEKLGVDI-----IEAGF-AA--ASPGDFEAVNAIAKTITKSTVCSLSRA-IE-RDIRQAGEAVAPAPKKRIHTF  107 (370)
T ss_dssp             HHHHHHHHHTCSE-----EEEEE-GG--GCHHHHHHHHHHHTTCSSSEEEEEEES-SH-HHHHHHHHHHTTSSSEEEEEE
T ss_pred             HHHHHHHHcCCCE-----EEEeC-CC--CCHHHHHHHHHHHHhCCCCeEEEEecC-CH-HHHHHHHHHHhhCCCCEEEEE
Confidence            3344566677776     44223 22  233   677888777677766655422 32 234444    34899999665


Q ss_pred             ccCC
Q psy11600         95 VEPV   98 (277)
Q Consensus        95 ~e~~   98 (277)
                      .-+.
T Consensus       108 ~~~S  111 (370)
T 3rmj_A          108 IATS  111 (370)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            4333

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=83.12  E-value=11  Score=33.48  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             CHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc--hhhhhH
Q psy11600         51 GHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV--LQDWIE  124 (277)
Q Consensus        51 g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~--p~~~i~  124 (277)
                      ..+-|.-||+. -.      .-.-||-+......++|||.||+|.-.---  -..-++.+|+....++  ++  -+++++
T Consensus        37 NIDhVAtLRnA-Rg------~~~PDpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~t~lNlEma~t~emi~  109 (278)
T 3gk0_A           37 NIDHVATLRNA-RG------TAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVKTRMNLECAVTPEMLD  109 (278)
T ss_dssp             ECHHHHHHHHH-HS------SSCSCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSSHHHHH
T ss_pred             chHhhhhhhcc-CC------CCCCCHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHH
Confidence            44556666643 11      123367777888889999999999764211  4566888888765544  33  477889


Q ss_pred             HHHhcCCCeEEeecC
Q psy11600        125 PMADANVDQYTFHVE  139 (277)
Q Consensus       125 ~~~~~g~d~it~H~E  139 (277)
                      ...+..++.+|+=+|
T Consensus       110 ial~~kP~~vtLVPE  124 (278)
T 3gk0_A          110 IACEIRPHDACLVPE  124 (278)
T ss_dssp             HHHHHCCSEEEECCC
T ss_pred             HHHHcCCCEEEECCC
Confidence            899999999999888

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=82.83  E-value=4.1  Score=37.59  Aligned_cols=107  Identities=13%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             eeCCCCCHHhHHHHHhh--cCceEEEEecCC-----CCCchhhhhhhhhHHHHHhhCCCccEEEeCC---CCcCcHHHHH
Q psy11600        161 AIKPKTPVDVIAEYIES--ADLVLIMTVEPG-----FGGQKFMQDMMPKVKWLRENYPTLNIEVDGG---VGPNTIDECA  230 (277)
Q Consensus       161 ~i~p~t~~~~i~~~i~~--~d~vl~mav~Pg-----t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGg---V~~~tv~~~~  230 (277)
                      .+++..+.+.....++.  +|. +.+.+||.     ..|..-....++.|+++++.. ++-+.+-+-   .+.+.+..+.
T Consensus       150 nig~~~~~e~~~~~ve~~~ada-l~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l~  227 (365)
T 3sr7_A          150 NIGLDKPYQAGLQAVRDLQPLF-LQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTAI  227 (365)
T ss_dssp             EEETTSCHHHHHHHHHHHCCSC-EEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHhcCCCE-EEEeccccccccCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHHH
Confidence            44555666555555443  333 33566652     122222345667888888764 455555532   4667788899


Q ss_pred             HccCCC------CCccc-----------------ccCHHHHHHHHHhhCCCCeEEEeCCCCc
Q psy11600        231 KCLTGF------GGQKF-----------------MQDMMPKVKWLRENYPTLNIEVDGGVGP  269 (277)
Q Consensus       231 ~~gpg~------ggq~F-----------------~~~~~~kI~~l~~~~~~~~I~VDGGI~~  269 (277)
                      ++|+++      ||..|                 ......-+.+.+...+++.|-+||||.-
T Consensus       228 ~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~  289 (365)
T 3sr7_A          228 DLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRH  289 (365)
T ss_dssp             HHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCS
T ss_pred             HcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence            999986      44333                 1123344445444455788999999974

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=82.83  E-value=19  Score=32.04  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=39.3

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccc-----cCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFV-----PNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fv-----p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      -+-++.|.+.|+++  +.+  |.|+     |.+.=..+.++.+++. ++..+.+.  +.| .+.++...++|++.+++-
T Consensus        31 ~~i~~~L~~~Gv~~--IE~--g~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~l--~~~-~~~i~~a~~~g~~~v~i~  101 (307)
T 1ydo_A           31 ITWINQLSRTGLSY--IEI--TSFVHPKWIPALRDAIDVAKGIDRE-KGVTYAAL--VPN-QRGLENALEGGINEACVF  101 (307)
T ss_dssp             HHHHHHHHTTTCSE--EEE--EECSCTTTCGGGTTHHHHHHHSCCC-TTCEEEEE--CCS-HHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHcCCCE--EEE--CCCcCcccccccCCHHHHHHHhhhc-CCCeEEEE--eCC-HHhHHHHHhCCcCEEEEE
Confidence            34455677778776  333  5453     4433223455666553 66666654  344 446888899999998443

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=82.77  E-value=6.6  Score=35.64  Aligned_cols=84  Identities=13%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             CCceEeeecc---ccCcccHHHHHHHHHHcCCCEEEEeccccccccC-----CCCCHHHHHHHHhcCCCCeeeeeeeccC
Q psy11600          4 VQCMIGPSIL---NSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPN-----LTFGHPVVKCLRNKIPKAFFETHMMVQN   75 (277)
Q Consensus         4 ~~~~~~~s~~---~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~-----~~~g~~~v~~l~~~~~~~~~d~Hlmv~~   75 (277)
                      +.++|+|.=+   ..+..+..+-.+.|++.|+|++|+  .+|.+.+.     -.+..+.++.+|+. .++|+-+-=-+.+
T Consensus       212 v~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~v--s~g~~~~~~~~~~~~~~~~~~~~ik~~-~~iPVi~~GgI~s  288 (340)
T 3gr7_A          212 LFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDV--SSGAIVPARMNVYPGYQVPFAELIRRE-ADIPTGAVGLITS  288 (340)
T ss_dssp             EEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEE--ECCCSSCCCCCCCTTTTHHHHHHHHHH-TTCCEEEESSCCC
T ss_pred             eEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEE--ecCCccCCCCCCCccccHHHHHHHHHH-cCCcEEeeCCCCC
Confidence            4567777522   123456667788899999999666  44443321     12345788999987 4677655434445


Q ss_pred             cHHhHHHHHhcC-CCeE
Q psy11600         76 PQQWIEPMADAN-VDQY   91 (277)
Q Consensus        76 p~~~i~~l~~ag-~d~i   91 (277)
                      ++... .+.+.| +|.+
T Consensus       289 ~e~a~-~~L~~G~aD~V  304 (340)
T 3gr7_A          289 GWQAE-EILQNGRADLV  304 (340)
T ss_dssp             HHHHH-HHHHTTSCSEE
T ss_pred             HHHHH-HHHHCCCeeEE
Confidence            65544 455556 9988

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=82.75  E-value=20  Score=32.34  Aligned_cols=86  Identities=12%  Similarity=0.200  Sum_probs=48.7

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccccccccCC---CCCHHHHHHHHhcCCCCeeeeeeeccC-cHHhHHHHHhcCCCeE
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVPNL---TFGHPVVKCLRNKIPKAFFETHMMVQN-PQQWIEPMADANVDQY   91 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~---~~g~~~v~~l~~~~~~~~~d~Hlmv~~-p~~~i~~l~~ag~d~i   91 (277)
                      +...+.++++.+.+.|++.+++  ..|..-|..   .+=.++++.+++.  ++.+  ++-... ..+.++.+.++|++.+
T Consensus       100 s~eei~~~~~~~~~~g~~~i~~--~gg~~~p~~~~~~~l~~ll~~ik~~--g~~i--~~t~G~l~~e~l~~L~~aGvd~v  173 (369)
T 1r30_A          100 EVEQVLESARKAKAAGSTRFCM--GAAWKNPHERDMPYLEQMVQGVKAM--GLEA--CMTLGTLSESQAQRLANAGLDYY  173 (369)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEE--EECCSSCCTTTHHHHHHHHHHHHHT--TSEE--EEECSSCCHHHHHHHHHHCCCEE
T ss_pred             CHHHHHHHHHHHHHcCCcEEEE--EeCCCCCCcCCHHHHHHHHHHHHHc--CCeE--EEecCCCCHHHHHHHHHCCCCEE
Confidence            3445556666666788998663  333211221   1223566666653  3333  322211 3457899999999999


Q ss_pred             EEeccCCCCCHHHHHHHHh
Q psy11600         92 TFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        92 ~~H~e~~d~g~~~i~~i~~  110 (277)
                      .+-++.   .+++.+.+++
T Consensus       174 ~i~les---~~e~~~~i~~  189 (369)
T 1r30_A          174 NHNLDT---SPEFYGNIIT  189 (369)
T ss_dssp             ECCCBS---CHHHHHHHCC
T ss_pred             eecCcC---CHHHHHHhCC
Confidence            655554   4666666653

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=82.72  E-value=26  Score=31.25  Aligned_cols=78  Identities=9%  Similarity=0.037  Sum_probs=42.1

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCC-C------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE-e
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVD-N------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT-F  136 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d-~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it-~  136 (277)
                      ....+..+.+.+.|||+|=+=.|... |            --.+|+++++. ..++.+   -.+.++.-.++|+++|- +
T Consensus        52 ~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~-~vpiSIDT~~~~Va~aAl~aGa~iINdV  130 (294)
T 2dqw_A           52 ERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL-GVPVSVDTRKPEVAEEALKLGAHLLNDV  130 (294)
T ss_dssp             -CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT-CSCEEEECSCHHHHHHHHHHTCSEEECS
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEECCCHHHHHHHHHhCCCEEEEC
Confidence            44556678888899999944444321 1            23445555543 444433   35566666777888763 2


Q ss_pred             ecCCCCChHHHHHHHHHhC
Q psy11600        137 HVEPVDNVPQVIRQIKEAG  155 (277)
Q Consensus       137 H~E~~~~~~~~~~~I~~~g  155 (277)
                      -.+   ..+...+.+++.|
T Consensus       131 sg~---~d~~m~~v~a~~~  146 (294)
T 2dqw_A          131 TGL---RDERMVALAARHG  146 (294)
T ss_dssp             SCS---CCHHHHHHHHHHT
T ss_pred             CCC---CChHHHHHHHHhC
Confidence            222   2345555565554

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=82.59  E-value=11  Score=33.20  Aligned_cols=99  Identities=14%  Similarity=0.081  Sum_probs=58.2

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEecccccccc-CCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc--CCCeEE
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMDGTFVP-NLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA--NVDQYT   92 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp-~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a--g~d~i~   92 (277)
                      |.....+..+++.+.|+|.  +||-=+.-.. .+.-=.++|+.+++. .++|+.+.-.  +|+ .++...++  |++++ 
T Consensus        32 ~~~~a~~~a~~~v~~GAdi--IDIg~~s~~~eE~~rv~~vi~~l~~~-~~~pisIDT~--~~~-v~~aal~a~~Ga~iI-  104 (271)
T 2yci_X           32 DPRPIQEWARRQAEKGAHY--LDVNTGPTADDPVRVMEWLVKTIQEV-VDLPCCLDST--NPD-AIEAGLKVHRGHAMI-  104 (271)
T ss_dssp             CCHHHHHHHHHHHHTTCSE--EEEECCSCSSCHHHHHHHHHHHHHHH-CCCCEEEECS--CHH-HHHHHHHHCCSCCEE-
T ss_pred             CHHHHHHHHHHHHHCCCCE--EEEcCCcCchhHHHHHHHHHHHHHHh-CCCeEEEeCC--CHH-HHHHHHHhCCCCCEE-
Confidence            4445555666677889999  7765433111 111123567788875 5777766543  554 35555666  99988 


Q ss_pred             EeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeec
Q psy11600         93 FHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        93 ~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~  138 (277)
                        -++.- +.+              -....++..+++|+.+|.+|.
T Consensus       105 --Ndvs~-~~d--------------~~~~~~~~~a~~~~~vv~m~~  133 (271)
T 2yci_X          105 --NSTSA-DQW--------------KMDIFFPMAKKYEAAIIGLTM  133 (271)
T ss_dssp             --EEECS-CHH--------------HHHHHHHHHHHHTCEEEEESC
T ss_pred             --EECCC-Ccc--------------ccHHHHHHHHHcCCCEEEEec
Confidence              22221 110              002345667889999999998

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=82.46  E-value=3.3  Score=38.12  Aligned_cols=67  Identities=15%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      .+.++.+.+.|+|.+|+|.-.|+.    ..-.+.++++|+.+ ++++-+. -+.. .+.++.+.++|+|++.+.
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~~----~~~~~~i~~i~~~~-~~~Vivg-~v~t-~e~A~~l~~aGaD~I~VG  173 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGHS----LNIIRTLKEIKSKM-NIDVIVG-NVVT-EEATKELIENGADGIKVG  173 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSB----HHHHHHHHHHHHHC-CCEEEEE-EECS-HHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCCc----HHHHHHHHHHHHhc-CCcEEEc-cCCC-HHHHHHHHHcCcCEEEEe
Confidence            678888999999999999776532    12236788888875 6666552 2233 456788999999999774

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=82.37  E-value=4.2  Score=39.52  Aligned_cols=115  Identities=10%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccc--------cCCCCCHHHHHHHHhcCCC--Ceeeeeeec----------------
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFV--------PNLTFGHPVVKCLRNKIPK--AFFETHMMV----------------   73 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fv--------p~~~~g~~~v~~l~~~~~~--~~~d~Hlmv----------------   73 (277)
                      ..+.++.+.++|+|.  +.|-=+.+-        |+....++.++++.+.|.+  +.+.+...-                
T Consensus       349 ~~~~a~~~l~aGad~--V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~  426 (555)
T 1jvn_A          349 ALEVASLYFRSGADK--VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFET  426 (555)
T ss_dssp             HHHHHHHHHHHTCSE--EEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEEC
T ss_pred             HHHHHHHHHHcCCCE--EEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccc
Confidence            346677788889998  443322221        2234467889999887763  555555431                


Q ss_pred             -------------------------cCcHHhHHHHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-----
Q psy11600         74 -------------------------QNPQQWIEPMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-----  118 (277)
Q Consensus        74 -------------------------~~p~~~i~~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-----  118 (277)
                                               .++.++++.+.++|++.+.+|--..+|     ..++++++++....|+-.     
T Consensus       427 ~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~  506 (555)
T 1jvn_A          427 EYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAG  506 (555)
T ss_dssp             SSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCC
T ss_pred             cccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCC
Confidence                                     124578899999999999998543333     467889998887766533     


Q ss_pred             -hhhhhHHHHhcCCCeEEe
Q psy11600        119 -LQDWIEPMADANVDQYTF  136 (277)
Q Consensus       119 -p~~~i~~~~~~g~d~it~  136 (277)
                       +++..+.+...|++-+.+
T Consensus       507 s~~d~~~~~~~~G~~gviv  525 (555)
T 1jvn_A          507 VPEHFEEAFLKTRADACLG  525 (555)
T ss_dssp             SHHHHHHHHHHSCCSEEEE
T ss_pred             CHHHHHHHHHhcCChHHHH
Confidence             676666666578877665

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=82.23  E-value=15  Score=33.13  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCH---HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc----CCCeE
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGH---PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA----NVDQY   91 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~---~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a----g~d~i   91 (277)
                      .--+-++.|.+.|+++  +.+  | | |.  .+|   +.++.+++..++..+.+.. -.+ .+.++...++    |++.+
T Consensus        29 ~Kl~ia~~L~~~Gv~~--IE~--g-~-p~--~~~~d~e~v~~i~~~~~~~~i~~l~-r~~-~~~i~~a~~al~~ag~~~v   98 (325)
T 3eeg_A           29 EKIIVAKALDELGVDV--IEA--G-F-PV--SSPGDFNSVVEITKAVTRPTICALT-RAK-EADINIAGEALRFAKRSRI   98 (325)
T ss_dssp             HHHHHHHHHHHHTCSE--EEE--E-C-TT--SCHHHHHHHHHHHHHCCSSEEEEEC-CSC-HHHHHHHHHHHTTCSSEEE
T ss_pred             HHHHHHHHHHHcCCCE--EEE--e-C-CC--CCHhHHHHHHHHHHhCCCCEEEEee-cCC-HHHHHHHHHhhcccCCCEE
Confidence            3334556677788887  333  3 3 22  233   4677787766776655432 122 2334444444    99999


Q ss_pred             EEec
Q psy11600         92 TFHV   95 (277)
Q Consensus        92 ~~H~   95 (277)
                      ++..
T Consensus        99 ~i~~  102 (325)
T 3eeg_A           99 HTGI  102 (325)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6653

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=82.16  E-value=18  Score=32.51  Aligned_cols=113  Identities=11%  Similarity=0.073  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCCEE--EEecccccccc--CCCCC--HHHHHHHHhcCCCCeeeeeee--ccCcHHhHHHHHhcCCCeEE
Q psy11600         21 HSESQNLLDSGADYL--HLDVMDGTFVP--NLTFG--HPVVKCLRNKIPKAFFETHMM--VQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~--h~DimDg~fvp--~~~~g--~~~v~~l~~~~~~~~~d~Hlm--v~~p~~~i~~l~~ag~d~i~   92 (277)
                      +...+.++..|+|.+  |++..-..+-|  +-.|.  .+.++++|+. .++|+-+=+-  ..+ .+.++.+.++|+|.|+
T Consensus       130 ~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~-~~~Pv~vK~~~~~~~-~~~a~~a~~~Gad~I~  207 (349)
T 1p0k_A          130 AQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSR-VSVPVIVKEVGFGMS-KASAGKLYEAGAAAVD  207 (349)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHH-CSSCEEEEEESSCCC-HHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHH-cCCCEEEEecCCCCC-HHHHHHHHHcCCCEEE
Confidence            334455677889985  44422100111  11231  3679999986 5777776431  134 4568888999999998


Q ss_pred             E--eccC-----------------CCC---CHHHHHHHHhhC-CCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         93 F--HVEP-----------------VDN---VPQVIRQIKEAG-MKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        93 ~--H~e~-----------------~d~---g~~~i~~i~~~~-~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      +  |--.                 .++   .+..|+.+++.. ..|+-.      +++..+.+. +|||.|.+
T Consensus       208 v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~-~GAd~V~i  279 (349)
T 1p0k_A          208 IGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIA-LGASCTGM  279 (349)
T ss_dssp             EEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEE
T ss_pred             EcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHH-cCCCEEEE
Confidence            8  5210                 122   334455555543 333321      566665554 57777766

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=82.14  E-value=21  Score=31.02  Aligned_cols=143  Identities=17%  Similarity=0.195  Sum_probs=80.4

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeecc--------
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ--------   74 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~--------   74 (277)
                      +.+|..+|..-+...+-++++.+...|+|.+=+  |..+.  .+++..=.+.++.+|+..+++|+.+=+=..        
T Consensus        19 ~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~--~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~   96 (258)
T 4h3d_A           19 RPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFEN--VENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLI   96 (258)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT--TTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccc--cCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence            457899999989888888888888888887543  44432  122223345677888765678876644332        


Q ss_pred             CcHHhHH---HHHhcC-CCeEEEeccCCCC---CHHHHHHHHhhCCC----cccc---h-----hhhhHHHHhcCCCeEE
Q psy11600         75 NPQQWIE---PMADAN-VDQYTFHVEPVDN---VPQVIRQIKEAGMK----VGQV---L-----QDWIEPMADANVDQYT  135 (277)
Q Consensus        75 ~p~~~i~---~l~~ag-~d~i~~H~e~~d~---g~~~i~~i~~~~~~----~~d~---p-----~~~i~~~~~~g~d~it  135 (277)
                      +.++|.+   .+.+.| +|++  .+|..-.   ...+++..++...+    .||.   |     ...+..+.+.|||.+=
T Consensus        97 ~~~~~~~ll~~~~~~~~~d~i--DvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvK  174 (258)
T 4h3d_A           97 SRDYYTTLNKEISNTGLVDLI--DVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPK  174 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEE--EEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHHHHhcCCchhh--HHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            1233443   344455 8999  6664321   22333333443322    2333   3     2345566777887654


Q ss_pred             eecCCCCChHHHHHHHH
Q psy11600        136 FHVEPVDNVPQVIRQIK  152 (277)
Q Consensus       136 ~H~E~~~~~~~~~~~I~  152 (277)
                      +=.-|. +..+.+++++
T Consensus       175 ia~~~~-~~~D~l~Ll~  190 (258)
T 4h3d_A          175 IAVMPQ-NEKDVLVLLE  190 (258)
T ss_dssp             EEECCS-SHHHHHHHHH
T ss_pred             EEEccC-CHHHHHHHHH
Confidence            433211 4455555444

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=82.13  E-value=2.3  Score=38.72  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHHh-hCCCCeEEEeCCCCccCHHHh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDEC  275 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~~-~~~~~~I~VDGGI~~~~~~~~  275 (277)
                      +-++.+++..|...++|    .++|.+++   .++|++. -=-.|.+   +.+++..+ ..++..|++-||||++|++.+
T Consensus       220 ~Av~~ar~~~p~~kIeV----EVdtldea~eAl~aGaD~I~LDn~~~---~~l~~av~~l~~~v~ieaSGGIt~~~I~~~  292 (320)
T 3paj_A          220 QAISTAKQLNPGKPVEV----ETETLAELEEAISAGADIIMLDNFSL---EMMREAVKINAGRAALENSGNITLDNLKEC  292 (320)
T ss_dssp             HHHHHHHHHSTTSCEEE----EESSHHHHHHHHHTTCSEEEEESCCH---HHHHHHHHHHTTSSEEEEESSCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEE----EECCHHHHHHHHHcCCCEEEECCCCH---HHHHHHHHHhCCCCeEEEECCCCHHHHHHH
Confidence            44566676777655544    34565554   4566663 1122333   34444333 235789999999999999987


Q ss_pred             hC
Q psy11600        276 AK  277 (277)
Q Consensus       276 ~~  277 (277)
                      ++
T Consensus       293 a~  294 (320)
T 3paj_A          293 AE  294 (320)
T ss_dssp             HT
T ss_pred             HH
Confidence            64

>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*

Probab=82.08  E-value=28  Score=31.15  Aligned_cols=154  Identities=10%  Similarity=0.037  Sum_probs=93.6

Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccccccccCCCCC-HHHHHHHHhcCCCCeeeeeeeccC-----cHHhHHHHHhcCCCeE
Q psy11600         18 SNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG-HPVVKCLRNKIPKAFFETHMMVQN-----PQQWIEPMADANVDQY   91 (277)
Q Consensus        18 ~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g-~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~i~~l~~ag~d~i   91 (277)
                      .+|.+.+++|...+.++  ++|-+|.--. ..-+ ..+.+.+++. .+++.-+||-..+     ..+.+..+.++|++-+
T Consensus        39 ~~l~~~~~~l~~l~p~f--vsVT~gagg~-~r~~t~~~a~~i~~~-~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nI  114 (304)
T 3fst_A           39 QTLWNSIDRLSSLKPKF--VSVTYGANSG-ERDRTHSIIKGIKDR-TGLEAAPHLTCIDATPDELRTIARDYWNNGIRHI  114 (304)
T ss_dssp             HHHHHHHHHHHTTCCSE--EEECCCTTSS-CHHHHHHHHHHHHHH-HCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHhcCCCCE--EEEeeCCCCc-chhHHHHHHHHHHHH-hCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEE
Confidence            34667889999888998  8888865432 1122 2445567664 5889999998876     3335667778898766


Q ss_pred             EEe-ccCCC-------CCHHHHHHHHhhCCCcccc---h------------hhhhHHHHhcCCCeEEeecCCCC-ChHHH
Q psy11600         92 TFH-VEPVD-------NVPQVIRQIKEAGMKVGQV---L------------QDWIEPMADANVDQYTFHVEPVD-NVPQV  147 (277)
Q Consensus        92 ~~H-~e~~d-------~g~~~i~~i~~~~~~~~d~---p------------~~~i~~~~~~g~d~it~H~E~~~-~~~~~  147 (277)
                      -.= -|...       ...++|+.+|+.+...+-+   |            ..+++.=+++|||++.=++==+- ...+.
T Consensus       115 LaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~iTQ~ffD~~~~~~f  194 (304)
T 3fst_A          115 VALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF  194 (304)
T ss_dssp             EEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHH
T ss_pred             EEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEeCccCCHHHHHHH
Confidence            221 33221       1678999999876543222   2            23555557899998765531000 22344


Q ss_pred             HHHHHHhCCc--cceeeCCCCCHHhHHHHH
Q psy11600        148 IRQIKEAGMK--VGLAIKPKTPVDVIAEYI  175 (277)
Q Consensus       148 ~~~I~~~g~~--~g~~i~p~t~~~~i~~~i  175 (277)
                      .+.+++.|+.  .=.|+.|-++...+..+.
T Consensus       195 ~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~  224 (304)
T 3fst_A          195 RDRCVSAGIDVEIIPGILPVSNFKQAKKLA  224 (304)
T ss_dssp             HHHHHHTTCCSCEECEECCCSCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEecccCCHHHHHHHH
Confidence            4555666543  345777777776665553

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=81.97  E-value=5.1  Score=36.55  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCCCEEEEecc-----------------c---cccccCCCCCHHHHHHHHhcCC-CCeeeeeeecc----
Q psy11600         20 LHSESQNLLDSGADYLHLDVM-----------------D---GTFVPNLTFGHPVVKCLRNKIP-KAFFETHMMVQ----   74 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~Dim-----------------D---g~fvp~~~~g~~~v~~l~~~~~-~~~~d~Hlmv~----   74 (277)
                      +.+..++++++|.|.+-+---                 |   |.+-....|-.++|+++|+.++ ++++-+=|-..    
T Consensus       145 f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~  224 (343)
T 3kru_A          145 FGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYME  224 (343)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSST
T ss_pred             HHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhc
Confidence            345556677889999444311                 1   2222223344789999999864 66777655442    


Q ss_pred             ------CcHHhHHHHHhcCCCeEEEe-ccCC-------CC-CHHHHHHHHhhCCCcccc------hhhhhHHHHhcC-CC
Q psy11600         75 ------NPQQWIEPMADANVDQYTFH-VEPV-------DN-VPQVIRQIKEAGMKVGQV------LQDWIEPMADAN-VD  132 (277)
Q Consensus        75 ------~p~~~i~~l~~ag~d~i~~H-~e~~-------d~-g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g-~d  132 (277)
                            +..+.++.+.++ +|++++. -...       .+ ...+++.+|+....|+-.      |+.- +.+.+.| ||
T Consensus       225 ~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~A-e~~l~~G~aD  302 (343)
T 3kru_A          225 GGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELA-EEILSNERAD  302 (343)
T ss_dssp             TSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHH-HHHHHTTSCS
T ss_pred             cCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHH-HHHHhchhhH
Confidence                  223357778888 9999773 2110       11 356788888876665432      4444 4444455 89


Q ss_pred             eEEe
Q psy11600        133 QYTF  136 (277)
Q Consensus       133 ~it~  136 (277)
                      .|.|
T Consensus       303 ~V~i  306 (343)
T 3kru_A          303 LVAL  306 (343)
T ss_dssp             EEEE
T ss_pred             HHHH
Confidence            9888

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=81.88  E-value=21  Score=32.08  Aligned_cols=58  Identities=16%  Similarity=0.113  Sum_probs=36.6

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC-C------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeEE
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD-N------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQYT  135 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d-~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~it  135 (277)
                      +....+.+.|||+|=+=.|... |            -..+|+++++.+..++.+   -...++.-.++|+++|-
T Consensus        37 ~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~~~~Va~aAl~aGa~iIN  110 (314)
T 2vef_A           37 QQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTWKSQVAEAALAAGADLVN  110 (314)
T ss_dssp             HHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHHcCCCEEE
Confidence            4567788899999944444331 2            245677777766555544   45566777778888874

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=81.85  E-value=4.1  Score=39.60  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             ccCcHHhHHHHHhcCCCeEEEeccCCCC---------CHHHHHHHHhhCCCcccc---hh-------------hhhHHHH
Q psy11600         73 VQNPQQWIEPMADANVDQYTFHVEPVDN---------VPQVIRQIKEAGMKVGQV---LQ-------------DWIEPMA  127 (277)
Q Consensus        73 v~~p~~~i~~l~~ag~d~i~~H~e~~d~---------g~~~i~~i~~~~~~~~d~---p~-------------~~i~~~~  127 (277)
                      +.+|.+..+.+.++|++++|| +|....         ..+.|+++++....|+.+   ..             +-++.+.
T Consensus       279 ~~dp~~~A~~~~~~Ga~~l~~-~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l  357 (555)
T 1jvn_A          279 LGKPVQLAQKYYQQGADEVTF-LNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF  357 (555)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEE-EEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCEEEE-EeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHH
Confidence            348999999999999999954 343211         256777777766666654   22             4489999


Q ss_pred             hcCCCeEEeecC
Q psy11600        128 DANVDQYTFHVE  139 (277)
Q Consensus       128 ~~g~d~it~H~E  139 (277)
                      ++|||.|.+-..
T Consensus       358 ~aGad~V~igt~  369 (555)
T 1jvn_A          358 RSGADKVSIGTD  369 (555)
T ss_dssp             HHTCSEEEECHH
T ss_pred             HcCCCEEEECCH
Confidence            999999999765

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3

Probab=81.85  E-value=5.8  Score=34.04  Aligned_cols=86  Identities=14%  Similarity=0.112  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc--hhhhh
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV--LQDWI  123 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~--p~~~i  123 (277)
                      .+|.++.++.+|+..|++++-  +.+.......+.+.+.|++.+++++... ..+.+++.+++.+..+.  -+  |..+-
T Consensus       133 ~Sf~~~~l~~~~~~~p~~~~~--~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~v~~~~~~G~~v~~wTvn~~~~~~  209 (248)
T 1zcc_A          133 FSFSEEMRQGLQSIAPEFRRM--MTLDIAKSPSLVGAVHHASIIEITPAQM-RRPGIIEASRKAGLEIMVYYGGDDMAVH  209 (248)
T ss_dssp             ECSCHHHHHHHHHHCTTSEEE--EEHHHHSSTHHHHHTTCCSEEEECHHHH-HSHHHHHHHHHHTCEEEEECCCCCHHHH
T ss_pred             EECCHHHHHHHHHHCCCCcEE--EEecCCccHHHHHHHcCCCEEEecHHHh-CCHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence            468999999999988887643  2222211134555678999997666544 04788999998876532  22  55554


Q ss_pred             HHHHhcCCCeEEe
Q psy11600        124 EPMADANVDQYTF  136 (277)
Q Consensus       124 ~~~~~~g~d~it~  136 (277)
                      ..+.+.|+|.|+-
T Consensus       210 ~~l~~~GvdgIiT  222 (248)
T 1zcc_A          210 REIATSDVDYINL  222 (248)
T ss_dssp             HHHHHSSCSEEEE
T ss_pred             HHHHHcCCCEEEE
Confidence            4388999999875

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=81.70  E-value=22  Score=31.84  Aligned_cols=103  Identities=5%  Similarity=-0.046  Sum_probs=67.4

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-cC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-EP   97 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~   97 (277)
                      ++.+.++.+.+.|+|.+++-.-         ...+.++.+++.  ++++-+  .+.+ .+.++.+.++|+|++.++- +.
T Consensus        90 ~~~~~~~~~~~~g~d~V~l~~g---------~p~~~~~~l~~~--g~~v~~--~v~s-~~~a~~a~~~GaD~i~v~g~~~  155 (326)
T 3bo9_A           90 WADDLVKVCIEEKVPVVTFGAG---------NPTKYIRELKEN--GTKVIP--VVAS-DSLARMVERAGADAVIAEGMES  155 (326)
T ss_dssp             THHHHHHHHHHTTCSEEEEESS---------CCHHHHHHHHHT--TCEEEE--EESS-HHHHHHHHHTTCSCEEEECTTS
T ss_pred             CHHHHHHHHHHCCCCEEEECCC---------CcHHHHHHHHHc--CCcEEE--EcCC-HHHHHHHHHcCCCEEEEECCCC
Confidence            4678888888999999876321         226788899874  555544  2334 4466778899999998763 21


Q ss_pred             C--C---CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         98 V--D---NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 ~--d---~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      .  .   ....+++++++....|+-.      +++..+.+ ++||+.+-+
T Consensus       156 GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al-~~GA~gV~v  204 (326)
T 3bo9_A          156 GGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAF-ALGAEAVQM  204 (326)
T ss_dssp             SEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEE
T ss_pred             CccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH-HhCCCEEEe
Confidence            1  0   1346777877766555433      55555554 479988776

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=81.65  E-value=2.5  Score=41.18  Aligned_cols=19  Identities=21%  Similarity=0.393  Sum_probs=13.8

Q ss_pred             hhhhHHHHhcCCCeEEeec
Q psy11600        120 QDWIEPMADANVDQYTFHV  138 (277)
Q Consensus       120 ~~~i~~~~~~g~d~it~H~  138 (277)
                      .+.++.|+++|+|.+.+-.
T Consensus       283 ~eR~~aLv~AGvD~iviD~  301 (556)
T 4af0_A          283 KDRLKLLAEAGLDVVVLDS  301 (556)
T ss_dssp             HHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHHhcCCcEEEEec
Confidence            4567778888888887743

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=81.63  E-value=3.6  Score=36.35  Aligned_cols=91  Identities=14%  Similarity=0.257  Sum_probs=52.6

Q ss_pred             ecCCCCChHHHHHHHHHhC-CccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCcc
Q psy11600        137 HVEPVDNVPQVIRQIKEAG-MKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLN  214 (277)
Q Consensus       137 H~E~~~~~~~~~~~I~~~g-~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~  214 (277)
                      |.+..++....++..++.. ....+.+...|. +.+...++ .+|++.+-+..|        +.+-+.++.++..+|++.
T Consensus       161 Hi~~~g~~~~ai~~~r~~~~~~~~i~vev~tl-ee~~~A~~aGaD~I~ld~~~~--------~~l~~~v~~l~~~~~~~~  231 (273)
T 2b7n_A          161 HLRHVKDLKSFLTHARKNLPFTAKIEIECESF-EEAKNAMNAGADIVMCDNLSV--------LETKEIAAYRDAHYPFVL  231 (273)
T ss_dssp             HHTTCSSHHHHHHHHGGGSCTTCCEEEEESSH-HHHHHHHHHTCSEEEEETCCH--------HHHHHHHHHHHHHCTTCE
T ss_pred             HHHHhCCHHHHHHHHHHhCCCCceEEEEcCCH-HHHHHHHHcCCCEEEECCCCH--------HHHHHHHHHhhccCCCcE
Confidence            4442223344555555432 112455555553 55555443 367665432211        222222334555578899


Q ss_pred             EEEeCCCCcCcHHHHHHccCCC
Q psy11600        215 IEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       215 i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +.+.|||+.+|+.++.++|+++
T Consensus       232 i~AsGGI~~~ni~~~~~aGaD~  253 (273)
T 2b7n_A          232 LEASGNISLESINAYAKSGVDA  253 (273)
T ss_dssp             EEEESSCCTTTHHHHHTTTCSE
T ss_pred             EEEECCCCHHHHHHHHHcCCcE
Confidence            9999999999999999999986

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=81.41  E-value=11  Score=34.58  Aligned_cols=146  Identities=12%  Similarity=0.046  Sum_probs=88.3

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcC-CCCeeeeeeecc-CcH---HhHHHHHhcCCC
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQ-NPQ---QWIEPMADANVD   89 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~-~p~---~~i~~l~~ag~d   89 (277)
                      .+...+.++.+++.+.|.+.+-+.+-+    ++..+ .+.++++|+.+ +++++-+..--. ++.   ++++.+.+.|++
T Consensus       163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~----~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~  237 (388)
T 2nql_A          163 RTLKARGELAKYWQDRGFNAFKFATPV----ADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPW  237 (388)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEEGGG----CTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCS
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEeCCC----CChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence            356667778888888898886555432    45678 89999999866 455544432111 233   356677788999


Q ss_pred             eEEEeccCCC-CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecCCCCChH---HHHHHHHHhCCccc
Q psy11600         90 QYTFHVEPVD-NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVEPVDNVP---QVIRQIKEAGMKVG  159 (277)
Q Consensus        90 ~i~~H~e~~d-~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E~~~~~~---~~~~~I~~~g~~~g  159 (277)
                      |+.   +... ......+.+++.+..|+-.      +.++-+.+.+-.+|.+.+-+-- +.+.   ++.+..++.|+..-
T Consensus       238 ~iE---qP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~  313 (388)
T 2nql_A          238 FAE---APVWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGALAAEHGIDVI  313 (388)
T ss_dssp             CEE---CCSCTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHHHHHTCEEC
T ss_pred             EEE---CCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEE
Confidence            983   2222 2466778888877665532      5555555555568999885431 1333   34445556665554


Q ss_pred             eeeCCCCCHH
Q psy11600        160 LAIKPKTPVD  169 (277)
Q Consensus       160 ~~i~p~t~~~  169 (277)
                      .+.+.++++.
T Consensus       314 ~h~~~es~i~  323 (388)
T 2nql_A          314 PHATVGAGIF  323 (388)
T ss_dssp             CCCCSSCSHH
T ss_pred             eecCCCcHHH
Confidence            4544456653

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=81.05  E-value=18  Score=31.95  Aligned_cols=96  Identities=17%  Similarity=0.103  Sum_probs=53.9

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccC---CCC------CHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPN---LTF------GHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~---~~~------g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      ....-+..+.+.+.|+|.  +||-=-..-|.   ++-      =.+.++.+++.  ++++.++-  .+|+ .++...++|
T Consensus        28 ~~~a~~~a~~~v~~GAdi--IDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT--~~~~-va~aAl~aG  100 (280)
T 1eye_A           28 LDDAVKHGLAMAAAGAGI--VDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDT--MRAD-VARAALQNG  100 (280)
T ss_dssp             HHHHHHHHHHHHHTTCSE--EEEECC--------------HHHHHHHHHHHHHT--TCCEEEEC--SCHH-HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCCE--EEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeC--CCHH-HHHHHHHcC
Confidence            333444555667789999  88862111121   111      12456666653  67776653  3444 466677789


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeec
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~  138 (277)
                      +++|- ++-...+-                  ...++..+++|+.+|.+|.
T Consensus       101 a~iIN-dvsg~~~d------------------~~m~~~~a~~~~~vVlmh~  132 (280)
T 1eye_A          101 AQMVN-DVSGGRAD------------------PAMGPLLAEADVPWVLMHW  132 (280)
T ss_dssp             CCEEE-ETTTTSSC------------------TTHHHHHHHHTCCEEEECC
T ss_pred             CCEEE-ECCCCCCC------------------HHHHHHHHHhCCeEEEEcC
Confidence            99882 22111100                  1356677889999999997

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=81.04  E-value=18  Score=32.65  Aligned_cols=76  Identities=12%  Similarity=0.014  Sum_probs=41.3

Q ss_pred             HHhHHHHHhcCCCeEEEeccCCC-C-----------CHHHHHHHHhhC-CCcccc---hhhhhHHHHhcCCCeEE-eecC
Q psy11600         77 QQWIEPMADANVDQYTFHVEPVD-N-----------VPQVIRQIKEAG-MKVGQV---LQDWIEPMADANVDQYT-FHVE  139 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~~d-~-----------g~~~i~~i~~~~-~~~~d~---p~~~i~~~~~~g~d~it-~H~E  139 (277)
                      .+..+.+.+.|||+|=+=.|... |           --.+|+++++.. ..++.+   -.+.++.-.++|+++|- +-.+
T Consensus        68 ~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~~~~VaeaAl~aGa~iINDVsg~  147 (318)
T 2vp8_A           68 RDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADLINDTWGG  147 (318)
T ss_dssp             HHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEECSCHHHHHHHHHHTCCEEEETTSS
T ss_pred             HHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCHHHHHHHHHhCCCEEEECCCC
Confidence            34567788899999933333221 1           233467777664 445544   45566777777888763 2222


Q ss_pred             CCCChHHHHHHHHHhC
Q psy11600        140 PVDNVPQVIRQIKEAG  155 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g  155 (277)
                         .-+...+.+++.|
T Consensus       148 ---~d~~m~~vaa~~g  160 (318)
T 2vp8_A          148 ---VDPAMPEVAAEFG  160 (318)
T ss_dssp             ---SSTTHHHHHHHHT
T ss_pred             ---CchHHHHHHHHhC
Confidence               2234555555553

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=80.93  E-value=28  Score=30.48  Aligned_cols=162  Identities=17%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             HHHHHHHcCCCEEEEe--ccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccC--------c------HHhHHHHHhc
Q psy11600         23 ESQNLLDSGADYLHLD--VMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQN--------P------QQWIEPMADA   86 (277)
Q Consensus        23 ~~~~l~~~~~~~~h~D--imDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~--------p------~~~i~~l~~a   86 (277)
                      .....++.|+|.+-+=  ...|-..|+    ..+++..++. .+  +-+|.|+.-        .      .+.++.+.++
T Consensus        13 ~a~~A~~~GAdRIELc~~L~~GGlTPS----~g~i~~~~~~-~~--ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~   85 (256)
T 1twd_A           13 CALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQR-VT--IPVHPIIRPRGGDFCYSDGEFAAILEDVRTVREL   85 (256)
T ss_dssp             HHHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHH-CC--SCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHH-cC--CceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHc
Confidence            3445567899995442  233556665    3457888875 44  568888862        1      1246778889


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHH-HhcCCCeEEeecCCC--CChHHHHHHHHHhCCccceeeC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM-ADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGLAIK  163 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~-~~~g~d~it~H~E~~--~~~~~~~~~I~~~g~~~g~~i~  163 (277)
                      |+|-+-|=+=..||              .+|  ....+.| ..++.--+|||--=+  .++...++.+..+         
T Consensus        86 GadGvV~G~Lt~dg--------------~iD--~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~l---------  140 (256)
T 1twd_A           86 GFPGLVTGVLDVDG--------------NVD--MPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAEL---------  140 (256)
T ss_dssp             TCSEEEECCBCTTS--------------SBC--HHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHH---------
T ss_pred             CCCEEEEeeECCCC--------------CcC--HHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHc---------
Confidence            99988443222222              111  1222222 233455699996200  0122222223222         


Q ss_pred             CCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCC
Q psy11600        164 PKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTG  235 (277)
Q Consensus       164 p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg  235 (277)
                                     ++--++|-  |.  +.-..+-++.++++.++...+.|..=|||+..|++++.+.|..
T Consensus       141 ---------------G~~rILTS--G~--~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~~tGv~  193 (256)
T 1twd_A          141 ---------------GIARVLTS--GQ--KSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVL  193 (256)
T ss_dssp             ---------------TCCEEEEC--TT--SSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCS
T ss_pred             ---------------CCCEEECC--CC--CCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHHHcCCC
Confidence                           22233331  11  1123344555666654433677888899999999999865554

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=80.92  E-value=16  Score=32.69  Aligned_cols=103  Identities=10%  Similarity=0.014  Sum_probs=68.0

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec-cC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV-EP   97 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~-e~   97 (277)
                      ++.+.++.+.+.|+|.+++-.  |  .|     .++++.+|+.  ++++-+.  +..+ +.++.+.++|+|++.++- +.
T Consensus        76 ~~~~~~~~a~~~g~d~V~~~~--g--~p-----~~~i~~l~~~--g~~v~~~--v~~~-~~a~~~~~~GaD~i~v~g~~~  141 (332)
T 2z6i_A           76 FVEDIVDLVIEEGVKVVTTGA--G--NP-----SKYMERFHEA--GIIVIPV--VPSV-ALAKRMEKIGADAVIAEGMEA  141 (332)
T ss_dssp             THHHHHHHHHHTTCSEEEECS--S--CG-----GGTHHHHHHT--TCEEEEE--ESSH-HHHHHHHHTTCSCEEEECTTS
T ss_pred             CHHHHHHHHHHCCCCEEEECC--C--Ch-----HHHHHHHHHc--CCeEEEE--eCCH-HHHHHHHHcCCCEEEEECCCC
Confidence            367888899999999966532  2  22     4678888873  6666543  3344 467788899999998762 21


Q ss_pred             C--C---CCHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         98 V--D---NVPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        98 ~--d---~g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                      .  .   ....+++++++....|+-.      |++..+. ..+|||.+.+
T Consensus       142 GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~a-l~~GAdgV~v  190 (332)
T 2z6i_A          142 GGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAG-FMLGAEAVQV  190 (332)
T ss_dssp             SEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH-HHTTCSEEEE
T ss_pred             CCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH-HHcCCCEEEe
Confidence            1  1   1356788888877666533      5554444 4489998876

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=80.90  E-value=11  Score=36.07  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=41.9

Q ss_pred             cHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhC-CCccc---c-hhhhhHHHHhcCCCeEEe
Q psy11600         76 PQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAG-MKVGQ---V-LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        76 p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~-~~~~d---~-p~~~i~~~~~~g~d~it~  136 (277)
                      ..+.++.+.++|+|.+++|.-..+.  ..+.++++|+.. ..++-   + ..+.+..+.++|+|.|.+
T Consensus       256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~v  323 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRV  323 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred             hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEE
Confidence            3566888899999999666432211  247799999886 44432   2 455677888888888866

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=80.82  E-value=17  Score=38.52  Aligned_cols=72  Identities=15%  Similarity=0.242  Sum_probs=43.0

Q ss_pred             HHHHHHHHcCCCEEEEeccc-cccccC---CCCCH-HHHHHHHhcCCCCeeeeeeec-------cCcH----HhHHHHHh
Q psy11600         22 SESQNLLDSGADYLHLDVMD-GTFVPN---LTFGH-PVVKCLRNKIPKAFFETHMMV-------QNPQ----QWIEPMAD   85 (277)
Q Consensus        22 ~~~~~l~~~~~~~~h~DimD-g~fvp~---~~~g~-~~v~~l~~~~~~~~~d~Hlmv-------~~p~----~~i~~l~~   85 (277)
                      +-.+.|.+.|+++.++.+.= +.|--.   .+-+| +.++.+++..|+..+-+.+--       ..|.    +.++...+
T Consensus       577 ~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~~i~~a~~  656 (1165)
T 2qf7_A          577 RIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAK  656 (1165)
T ss_dssp             HHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHHHHHHHHh
Confidence            34456677777776666632 122111   12344 668888888888776544321       1233    45788888


Q ss_pred             cCCCeEEE
Q psy11600         86 ANVDQYTF   93 (277)
Q Consensus        86 ag~d~i~~   93 (277)
                      +|+|.+++
T Consensus       657 ~g~d~iri  664 (1165)
T 2qf7_A          657 GGIDLFRV  664 (1165)
T ss_dssp             HTCCEEEE
T ss_pred             cCcCEEEE
Confidence            99999855

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=80.82  E-value=1.7  Score=38.59  Aligned_cols=73  Identities=12%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeec--cCcHHhHHHHHhcCCCe
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV--QNPQQWIEPMADANVDQ   90 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv--~~p~~~i~~l~~ag~d~   90 (277)
                      .|+..+.+-++.+.+.|+|.+  =+-|  |...|+..+  +.++.+++.++++++.+|.--  .-...-.....++|+++
T Consensus       152 ~~~~~~~~~~~~~~~~G~d~i--~l~Dt~G~~~P~~~~--~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~  227 (295)
T 1ydn_A          152 VTPQAVASVTEQLFSLGCHEV--SLGDTIGRGTPDTVA--AMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRV  227 (295)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEE--EEEETTSCCCHHHHH--HHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCE
T ss_pred             CCHHHHHHHHHHHHhcCCCEE--EecCCCCCcCHHHHH--HHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCE
Confidence            466677777777889999994  4557  555555333  678889988766889999833  33333344456789998


Q ss_pred             E
Q psy11600         91 Y   91 (277)
Q Consensus        91 i   91 (277)
                      +
T Consensus       228 v  228 (295)
T 1ydn_A          228 F  228 (295)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=80.76  E-value=26  Score=30.46  Aligned_cols=185  Identities=12%  Similarity=0.072  Sum_probs=101.5

Q ss_pred             CHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC--CHHHHHHHHhhCCCcc--cc-h-hhhhH
Q psy11600         51 GHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN--VPQVIRQIKEAGMKVG--QV-L-QDWIE  124 (277)
Q Consensus        51 g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~--g~~~i~~i~~~~~~~~--d~-p-~~~i~  124 (277)
                      ..+-|.-||+. -..      -.=+|-+......++|||-||+|.-.---  -..-+..+|+....++  .+ | .++++
T Consensus         9 NIdhVAtLRna-Rg~------~~Pdpv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~   81 (243)
T 1m5w_A            9 NIDHIATLRNA-RGT------AYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLA   81 (243)
T ss_dssp             ECHHHHHHHHT-SSC------CCSCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHH
T ss_pred             eHHHhhhhhcc-CCC------CCCCHHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHH
Confidence            34556666654 111      11467777888889999999999764211  4566888888765444  33 4 56888


Q ss_pred             HHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHh---HHHHHhhcCceEEEEecCCCCCchhhhhhhh
Q psy11600        125 PMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDV---IAEYIESADLVLIMTVEPGFGGQKFMQDMMP  201 (277)
Q Consensus       125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~---i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~  201 (277)
                      ...+..++.+|+=+|   ....+         .-.-|+......+.   +...+++.++-+-+.++|+.          +
T Consensus        82 ia~~~kP~~vtLVPE---~r~e~---------TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd~----------~  139 (243)
T 1m5w_A           82 IAVETKPHFCCLVPE---KRQEV---------TTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADE----------E  139 (243)
T ss_dssp             HHHHHCCSEEEECCC---CSSCS---------SCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCH----------H
T ss_pred             HHHHcCCCEEEECCC---CCCCc---------CCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCCH----------H
Confidence            889999999999887   32110         11222322222222   33345667777777888752          2


Q ss_pred             hHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh--CCCCeEEEeCCCCccCHHHhh
Q psy11600        202 KVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       202 kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~--~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .|+..++..-. -|+      +-|-..+ .+    .+..-...-+++++..-+.  ...+.+..=-|.|.+|+..++
T Consensus       140 qi~aA~~~GA~-~IE------LhTG~Ya-~a----~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgL~y~Nv~~ia  204 (243)
T 1m5w_A          140 QIKAAAEVGAP-FIE------IHTGCYA-DA----KTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIA  204 (243)
T ss_dssp             HHHHHHHTTCS-EEE------EECHHHH-HC----CSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHH
T ss_pred             HHHHHHHhCcC-EEE------Eechhhh-cC----CCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHh
Confidence            34444332211 111      1222111 00    0100011234444433222  245778888999999987664

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=80.74  E-value=29  Score=30.59  Aligned_cols=56  Identities=13%  Similarity=0.028  Sum_probs=30.8

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC-C------------CHHHHHHHHhhCCCcccc---hhhhhHHHHhcCCCeE
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD-N------------VPQVIRQIKEAGMKVGQV---LQDWIEPMADANVDQY  134 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d-~------------g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~g~d~i  134 (277)
                      +..+.+.+.|||+|=+=.|... |            --.+|+++++. ..++.+   -.+.++.-.++|+++|
T Consensus        33 ~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~~~~va~aAl~aGa~iI  104 (280)
T 1eye_A           33 KHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ-GITVSIDTMRADVARAALQNGAQMV  104 (280)
T ss_dssp             HHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCCCHHHHHHHHHcCCCEE
Confidence            3567778899999944443321 1            23445555543 334333   3455666666777776

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A

Probab=80.72  E-value=5.2  Score=33.74  Aligned_cols=83  Identities=13%  Similarity=0.122  Sum_probs=55.4

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIE  124 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~  124 (277)
                      .+|.++.++.+|+..|++++-  +.+....  ...+.+.|++.++.++...  .+.+++.+++.+..+.  -+ ....+.
T Consensus       128 ~Sf~~~~l~~~~~~~p~~~~~--~l~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v~~wtvn~~~~~~  201 (224)
T 1vd6_A          128 SSFDPLALLALRKAAPGLPLG--FLMAEDH--SALLPCLGVEAVHPHHALV--TEEAVAGWRKRGLFVVAWTVNEEGEAR  201 (224)
T ss_dssp             EESCHHHHHHHHHHCTTSCEE--EEESSCC--GGGGGGSCCSEEEEBGGGC--CHHHHHHHHHTTCEEEEECCCCHHHHH
T ss_pred             EeCCHHHHHHHHHHCCCCCEE--EEecccc--HHHHHHcCCcEEecCcccC--CHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            468999999999988887643  2333221  2334567899996666544  4889999988876532  22 233456


Q ss_pred             HHHhcCCCeEEe
Q psy11600        125 PMADANVDQYTF  136 (277)
Q Consensus       125 ~~~~~g~d~it~  136 (277)
                      .+.+.|+|.|+-
T Consensus       202 ~l~~~GvdgI~T  213 (224)
T 1vd6_A          202 RLLALGLDGLIG  213 (224)
T ss_dssp             HHHHTTCSEEEE
T ss_pred             HHHhcCCCEEEc
Confidence            778899998764

>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*

Probab=80.60  E-value=7.7  Score=39.31  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=48.6

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCC--------CCHHHHHHHHhc--C-CCCeeeeeeeccCcHHhHHHHHhcC
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLT--------FGHPVVKCLRNK--I-PKAFFETHMMVQNPQQWIEPMADAN   87 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~--------~g~~~v~~l~~~--~-~~~~~d~Hlmv~~p~~~i~~l~~ag   87 (277)
                      .+.++++.|.++|++++.+|=-.  ++..+.        +-...++.++..  . .+..+.+|+--.+....++.+.+.+
T Consensus       590 ayreeI~~L~~AGa~~IQIDEPa--L~~~L~~~~~d~~~~l~~a~~aln~a~gv~~~~~I~lH~C~G~~~di~~~L~~l~  667 (766)
T 1t7l_A          590 AINEEVKDLEEAGIKIVQIDEPA--FREKAPIKKSKWPEYFEWAINAFNLAANARPETQIHAHMCYSDFNEIIEYIHQLE  667 (766)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECTH--HHHTSCSSGGGHHHHHHHHHHHHHHHTCCCTTSEEEEECCCSCCTTTHHHHTTSC
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCc--ccccCCCcchhHHHHHHHHHHHHHHhhcCCCCceEEEEEecCchHHHHHHHHcCC
Confidence            45688899999999999888432  221111        112334444421  1 2456777877777777788888889


Q ss_pred             CCeEEEeccCC
Q psy11600         88 VDQYTFHVEPV   98 (277)
Q Consensus        88 ~d~i~~H~e~~   98 (277)
                      +|.+  |+|..
T Consensus       668 VD~I--sLE~~  676 (766)
T 1t7l_A          668 FDVI--SIEAS  676 (766)
T ss_dssp             CSEE--EEECT
T ss_pred             CCEE--EEecC
Confidence            9988  66643

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=80.40  E-value=26  Score=30.77  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=67.0

Q ss_pred             HHHHHHcCCCEEEEecccccc-----ccC---CCCC--HHHHHHHHhcCCCCeeeeeeecc---CcHHhHH---HHHhcC
Q psy11600         24 SQNLLDSGADYLHLDVMDGTF-----VPN---LTFG--HPVVKCLRNKIPKAFFETHMMVQ---NPQQWIE---PMADAN   87 (277)
Q Consensus        24 ~~~l~~~~~~~~h~DimDg~f-----vp~---~~~g--~~~v~~l~~~~~~~~~d~Hlmv~---~p~~~i~---~l~~ag   87 (277)
                      -+.++++|+|.+-+  -|+--     .|+   +|+.  ....+++++.-+..++.+++=..   +|++.++   ++.++|
T Consensus        30 A~l~e~aG~d~ilv--Gdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~kaG  107 (264)
T 1m3u_A           30 AKLFADEGLNVMLV--GDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAG  107 (264)
T ss_dssp             HHHHHHHTCCEEEE--CTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEE--CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHHcC
Confidence            34567789999766  33110     111   1221  12356676653455677777665   7776664   788899


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcc----c------------c----------hhhhhHHHHhcCCCeEEeec
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVG----Q------------V----------LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~----d------------~----------p~~~i~~~~~~g~d~it~H~  138 (277)
                      ++-+  ++|-...-.+.|+++.+....+.    .            +          -.+....+.++||+.+.+..
T Consensus       108 a~aV--klEgg~e~~~~I~al~~agipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivlE~  182 (264)
T 1m3u_A          108 ANMV--KIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLEC  182 (264)
T ss_dssp             CSEE--ECCCSGGGHHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             CCEE--EECCcHHHHHHHHHHHHCCCCeEeeecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9999  88743334667777766542211    0            0          12355678889999888864

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0

Probab=80.39  E-value=4  Score=34.92  Aligned_cols=97  Identities=18%  Similarity=0.213  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC--cccc-hhhhhH
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK--VGQV-LQDWIE  124 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~--~~d~-p~~~i~  124 (277)
                      .+|.+..++.+|+..|++++-  +.+.+..  .+.+...|++.+++|+......+.+++.+++.+..  +.-+ -...+.
T Consensus       136 ~Sf~~~~l~~~~~~~p~~~~~--~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~~WTVn~~~~~~  211 (238)
T 3no3_A          136 ISFNMDACKEFIRLCPKSEVS--YLNGELS--PMELKELGFTGLDYHYKVLQSHPDWVKDCKVLGMTSNVWTVDDPKLME  211 (238)
T ss_dssp             EESCHHHHHHHHHHCTTSCEE--ECSSCSC--HHHHHHTTCCEEEEEHHHHHHSTTHHHHHHHTTCEEEEECCCSHHHHH
T ss_pred             EECCHHHHHHHHHHCCCCeEE--EEeCCCC--HHHHHHCCCceEeccHHhhhCCHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence            468999999999988887653  2333221  13456678998977765432245688888888765  3333 345667


Q ss_pred             HHHhcCCCeEEeecCCCCChHHHHHHHHH
Q psy11600        125 PMADANVDQYTFHVEPVDNVPQVIRQIKE  153 (277)
Q Consensus       125 ~~~~~g~d~it~H~E~~~~~~~~~~~I~~  153 (277)
                      .+.+.|+|.|+-=     .+..+.+.+++
T Consensus       212 ~l~~~GVdgIiTD-----~P~~~~~~l~~  235 (238)
T 3no3_A          212 EMIDMGVDFITTD-----LPEETQKILHS  235 (238)
T ss_dssp             HHHHHTCSEEEES-----CHHHHHHHHHH
T ss_pred             HHHHcCCCEEECC-----CHHHHHHHHHh
Confidence            7889999988852     34555555554

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}

Probab=80.32  E-value=6.3  Score=34.07  Aligned_cols=84  Identities=18%  Similarity=0.265  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCC--CeEEEeccCCCCCHHHHHHHHhhCCCc--ccc--hhh
Q psy11600         48 LTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANV--DQYTFHVEPVDNVPQVIRQIKEAGMKV--GQV--LQD  121 (277)
Q Consensus        48 ~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~--d~i~~H~e~~d~g~~~i~~i~~~~~~~--~d~--p~~  121 (277)
                      .+|.+..++.+|+..|++++-  +.+.......+.+.+.|+  +.++.++...  .+.+++.+++.+..+  .-+  |++
T Consensus       174 ~Sf~~~~l~~~~~~~p~~~~~--~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~Gl~v~~wTvn~~~~  249 (272)
T 3ch0_A          174 QSFDVRALEYMHSQYPDIKLS--YLVETKGTLKKQLEKLSFTPAVYSPDVTLV--SKKDIDAAHKLGMRVIPWTVNTKEE  249 (272)
T ss_dssp             EESCHHHHHHHHHHCTTSEEE--EEECSSCCHHHHHTTSSSCCSEEEEBGGGC--CHHHHHHHHHTTCEECCBCCCSHHH
T ss_pred             EeCCHHHHHHHHHHCCCCcEE--EEecCCCCHHHHHHHcCCCCcEEccchhhc--CHHHHHHHHHcCCEEEEeccCCHHH
Confidence            368899999999988886543  333333333344455676  8886665544  488999998887553  223  444


Q ss_pred             hhHHHHhcCCCeEEe
Q psy11600        122 WIEPMADANVDQYTF  136 (277)
Q Consensus       122 ~i~~~~~~g~d~it~  136 (277)
                       +..+.+.|+|.|+-
T Consensus       250 -~~~l~~~GvdgIiT  263 (272)
T 3ch0_A          250 -IETLISLGVDGIIT  263 (272)
T ss_dssp             -HHHHHHHTCSEEEE
T ss_pred             -HHHHHHcCCCEEEe
Confidence             46778889988764

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=80.28  E-value=34  Score=30.98  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             cHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec---
Q psy11600         19 NLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV---   95 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~---   95 (277)
                      .+.+.++.+.+.|+|.+++-.  |  .|    .++.++.+++.  ++++-+.  +.++. ++..+.++|+|++.++-   
T Consensus       110 ~~~~~~~~~~~~g~~~V~~~~--g--~~----~~~~i~~~~~~--g~~v~~~--v~t~~-~a~~a~~~GaD~i~v~g~~~  176 (369)
T 3bw2_A          110 GYDAKLAVLLDDPVPVVSFHF--G--VP----DREVIARLRRA--GTLTLVT--ATTPE-EARAVEAAGADAVIAQGVEA  176 (369)
T ss_dssp             THHHHHHHHHHSCCSEEEEES--S--CC----CHHHHHHHHHT--TCEEEEE--ESSHH-HHHHHHHTTCSEEEEECTTC
T ss_pred             cHHHHHHHHHhcCCCEEEEeC--C--CC----cHHHHHHHHHC--CCeEEEE--CCCHH-HHHHHHHcCCCEEEEeCCCc
Confidence            367888999999999866532  1  11    36889999873  6665543  34555 47778889999998832   


Q ss_pred             ----cCC-C--------CC-HHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEe
Q psy11600         96 ----EPV-D--------NV-PQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        96 ----e~~-d--------~g-~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~  136 (277)
                          ... +        .+ ...++++++....|+-.      |++ +..+.++|||.|.+
T Consensus       177 GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~-~~~~l~~GAd~V~v  236 (369)
T 3bw2_A          177 GGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQ-IAAVLAAGADAAQL  236 (369)
T ss_dssp             SEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHH-HHHHHHTTCSEEEE
T ss_pred             CCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHH-HHHHHHcCCCEEEE
Confidence                110 0        12 67788888776555432      444 44555689998886

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=80.05  E-value=1.2  Score=39.90  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             hhhHHHHHhhCCC-ccEEEeCCCCcCcHHHHHHccCCC-CCcccccCHHHHHHH-HHhh---CCCCeEEEeCCCCccCHH
Q psy11600        200 MPKVKWLRENYPT-LNIEVDGGVGPNTIDECAKCLTGF-GGQKFMQDMMPKVKW-LREN---YPTLNIEVDGGVGPNTID  273 (277)
Q Consensus       200 l~kI~~l~~~~~~-~~i~vdGgV~~~tv~~~~~~gpg~-ggq~F~~~~~~kI~~-l~~~---~~~~~I~VDGGI~~~~~~  273 (277)
                      .+-++.+++..+. ..+.+- --+++.+.+..++|+++ .-..|.++.++++.+ ++..   .++..|++-||||++|++
T Consensus       186 ~~ai~~~r~~~~~~~~i~ve-v~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGIt~~ni~  264 (294)
T 3c2e_A          186 TNAVKNARAVCGFAVKIEVE-CLSEDEATEAIEAGADVIMLDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGLNLDNLE  264 (294)
T ss_dssp             HHHHHHHHHHHCTTSCEEEE-CSSSHHHHHHHHHTCSEEECCC---------------------CCEEEEECCCCC----
T ss_pred             HHHHHHHHHhcCcCCeEEEe-cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcccccCCCCeEEEEECCCCHHHHH
Confidence            4456666665553 344431 01333455556778886 223344444444333 2222   255889999999999998


Q ss_pred             HhhC
Q psy11600        274 ECAK  277 (277)
Q Consensus       274 ~~~~  277 (277)
                      .+++
T Consensus       265 ~~~~  268 (294)
T 3c2e_A          265 EYLC  268 (294)
T ss_dssp             --CC
T ss_pred             HHHH
Confidence            8753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1rpxa_	230	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	2e-51
d1tqja_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {S	2e-46
d2flia1	217	c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimera	3e-43
d1h1ya_	220	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {R	5e-37
d1tqxa_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	4e-36
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	2e-20

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  165 bits (420), Expect = 2e-51
 Identities = 69/236 (29%), Positives = 103/236 (43%), Gaps = 46/236 (19%)

Query: 1   MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRN 60
            S    ++ PSIL+++ S L  + + +  +G D++H+DVMDG FVPN+T G  VV  LR 
Sbjct: 6   FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRP 65

Query: 61  KIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQ 120
                  + H+M+  P Q +     A  D  + H E                        
Sbjct: 66  ITDL-PLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST-------------------- 104

Query: 121 DWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADL 180
                                 ++ + I QIK  G K G+ + P TP+  I   +++ DL
Sbjct: 105 ---------------------IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL 143

Query: 181 VLIMTVEPGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKC 232
           VLIM+V PGFGGQ F++  + K+        E      IEVDGGVGP    +  + 
Sbjct: 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEA 199

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score =  152 bits (386), Expect = 2e-46
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 46/230 (20%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
           ++ PSIL++D S L  E + + ++GAD++H+DVMDG FVPN+T G  +V  +R    K  
Sbjct: 4   VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKT 62

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
            + H+M+  P++++E  A A  D  + HVE   +                          
Sbjct: 63  LDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS-------------------------- 96

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV 186
                           ++ + + QI+E G K G  + P TP+D +   +   DL+LIM+V
Sbjct: 97  ---------------PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSV 141

Query: 187 EPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKC 232
            PGFGGQ F+ +++PK++ LR+          IEVDGG+ PN   +  + 
Sbjct: 142 NPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEA 191

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Length = 217

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  144 bits (365), Expect = 3e-43
 Identities = 77/229 (33%), Positives = 110/229 (48%), Gaps = 48/229 (20%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PSIL +D +N  SE   + ++ A+Y+H+D+MDG FVPN++FG  VV  +  K  K  F
Sbjct: 4   IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASM-RKHSKLVF 62

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV +P                                           + ++E  A
Sbjct: 63  DCHLMVVDP-------------------------------------------ERYVEAFA 79

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVE 187
            A  D  T H E   ++   +++IK AGMK G+ I P TP   +   ++  D VLIMTV 
Sbjct: 80  QAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN 139

Query: 188 PGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKC 232
           PGFGGQ F+ + + KV     W  E   + +IEVDGGV   TI  C + 
Sbjct: 140 PGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEA 188

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Length = 220

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  128 bits (323), Expect = 5e-37
 Identities = 93/228 (40%), Positives = 135/228 (59%), Gaps = 46/228 (20%)

Query: 8   IGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFF 67
           I PS+L+SD +NL +E+  ++  GAD+LH+D+MDG FVPNLT G PV++ LR    KA+ 
Sbjct: 4   IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRK-HTKAYL 62

Query: 68  ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMA 127
           + H+MV NP  ++EP+A A    +TFH+E   +  Q                        
Sbjct: 63  DCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQ------------------------ 98

Query: 128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES---ADLVLIM 184
                             ++I+ IK  GM+ G++++P TPV+ +   +E+    +LVL+M
Sbjct: 99  ------------------ELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVM 140

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A  
Sbjct: 141 TVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA 188

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

 Score =  126 bits (317), Expect = 4e-36
 Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 43/228 (18%)

Query: 7   MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAF 66
           +I PS+L S++S L  E+Q +   GA+++HLDVMD  FVPNL+FG PV+  L+      F
Sbjct: 4   IIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 63

Query: 67  FETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM 126
           F+ H+MV+ P++++        +Q TFH                                
Sbjct: 64  FDVHLMVEYPEKYVP--LLKTSNQLTFHF------------------------------- 90

Query: 127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIM 184
                       E  +   Q+ ++I++  +  G++IKPKT V  +   +++   + VL+M
Sbjct: 91  --------EALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVM 142

Query: 185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
           TVEPGFGGQ FM DMM KV +LR+ Y  LNI+VDGG+   T +  A  
Sbjct: 143 TVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASH 190

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 84.9 bits (209), Expect = 2e-20
 Identities = 21/224 (9%), Positives = 56/224 (25%), Gaps = 50/224 (22%)

Query: 12  ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLR-NKIPKAFFETH 70
            +  D   +   +       A+   +D+++   +  +  G   V+ L+     K      
Sbjct: 5   QVALDNQTM-DSAYETTRLIAE--EVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADA 61

Query: 71  MMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADAN 130
            +    +       +AN D  T                                      
Sbjct: 62  KIADAGKILSRMCFEANADWVTVICCA--------------------------------- 88

Query: 131 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES--ADLVLIMTVEP 188
                     ++     +   KE    V + +      +   ++ ++    +V   + + 
Sbjct: 89  ---------DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDA 139

Query: 189 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKC 232
              G  + +  +  +K L        + V GG+    +      
Sbjct: 140 QAAGVAWGEADITAIKRLS--DMGFKVTVTGGLALEDLPLFKGI 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	100.0
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	100.0
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	100.0
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	100.0
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	100.0
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	99.95
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	99.95
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	99.95
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	99.94
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	99.93
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.8
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	98.83
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.64
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.38
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.64
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.5
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	97.49
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	97.48
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.33
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.29
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.06
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.05
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	97.04
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.82
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	96.38
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	96.15
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	95.98
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	95.64
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	95.56
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	95.41
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	95.4
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	95.06
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	94.77
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	94.72
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	94.66
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	94.65
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	94.55
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	94.51
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	94.32
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	94.26
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	94.08
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	94.01
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	93.84
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	93.83
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	93.5
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	92.98
d1u1ha2	365	5-methyltetrahydropteroyltriglutamate--homocystein	92.1
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	90.88
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	90.86
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	90.76
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	90.3
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	89.29
d1u1ha1	394	5-methyltetrahydropteroyltriglutamate--homocystein	88.96
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	88.28
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	88.01
d1f6ya_	262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	87.88
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	87.69
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	87.28
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	87.01
d1pv8a_	320	5-aminolaevulinate dehydratase, ALAD (porphobilino	87.0
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	86.54
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	86.51
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	86.13
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	85.37
d1v93a_	292	Methylenetetrahydrofolate reductase {Thermus therm	84.59
d1b5ta_	275	Methylenetetrahydrofolate reductase {Escherichia c	82.76
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	82.74
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	82.38
d1h7na_	340	5-aminolaevulinate dehydratase, ALAD (porphobilino	81.7
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	81.59
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	81.2
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	80.95
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	80.89
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	80.54
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	80.47

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=1.1e-52  Score=370.51  Aligned_cols=213  Identities=35%  Similarity=0.611  Sum_probs=197.6

Q ss_pred             CCCCCceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhH
Q psy11600          1 MSHVQCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWI   80 (277)
Q Consensus         1 ~~~~~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i   80 (277)
                      ||-.+++|+|||||+|+.+|+++++.+++.|+||+|+|||||+||||++||+++++++|+ +|++++|+|||+.+|.+++
T Consensus         6 ~~~~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~~~v~~i~~-~t~~~~dvHLMv~~P~~~i   84 (230)
T d1rpxa_           6 FSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRP-ITDLPLDVHLMIVEPDQRV   84 (230)
T ss_dssp             SCTTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGG-GCCSCEEEEEESSSHHHHH
T ss_pred             cccCCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCccccChHHHhhhhh-ccCceeeeeeeecchhhhH
Confidence            455678999999999999999999999999999999999999999999999999999997 5999999999999999999


Q ss_pred             HHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccce
Q psy11600         81 EPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGL  160 (277)
Q Consensus        81 ~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~  160 (277)
                      +.+.++|+++++||+|+.+..                                         ++.++++.|++.|+++|+
T Consensus        85 ~~~~~~g~~~i~~H~E~~~~~-----------------------------------------~~~~~i~~ik~~g~k~Gi  123 (230)
T d1rpxa_          85 PDFIKAGADIVSVHCEQSSTI-----------------------------------------HLHRTINQIKSLGAKAGV  123 (230)
T ss_dssp             HHHHHTTCSEEEEECSTTTCS-----------------------------------------CHHHHHHHHHHTTSEEEE
T ss_pred             HHHhhcccceeEEeccccccc-----------------------------------------cHHHHHHHHHHcCCeEEE
Confidence            999999999999999976510                                         567899999999999999


Q ss_pred             eeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh----CCCccEEEeCCCCcCcHHHHHHccCCC
Q psy11600        161 AIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKCLTGF  236 (277)
Q Consensus       161 ~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~----~~~~~i~vdGgV~~~tv~~~~~~gpg~  236 (277)
                      +++|+||++.+.+|++.+|.+++|+|+||++||+|++++++||++++++    .+++.|+||||||.+|+..|.++|++.
T Consensus       124 alnp~T~~~~l~~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~  203 (230)
T d1rpxa_         124 VLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANA  203 (230)
T ss_dssp             EECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCE
T ss_pred             EeCCCCCHHHHHHHHhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCE
Confidence            9999999999999999999999999999999999999999999998765    568999999999999999999999996


Q ss_pred             ---CCcccc-cCHHHHHHHHHhh
Q psy11600        237 ---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       237 ---ggq~F~-~~~~~kI~~l~~~  255 (277)
                         ||..|. ++..+.++++|.-
T Consensus       204 ~V~GS~if~~~d~~~~i~~lk~~  226 (230)
T d1rpxa_         204 LVAGSAVFGAPDYAEAIKGIKTS  226 (230)
T ss_dssp             EEESHHHHTSSCHHHHHHHHHTC
T ss_pred             EEEChHHHCCCCHHHHHHHHHHh
Confidence               778887 4788888888853

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=5.7e-52  Score=363.29  Aligned_cols=205  Identities=40%  Similarity=0.702  Sum_probs=195.4

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++|+|||+|+|+.+|+++++++++.|+||+|+|||||+||||++||++.++++|+ +|++++|+|||+.||.+|++.+.+
T Consensus         2 ~kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~   80 (217)
T d2flia1           2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRK-HSKLVFDCHLMVVDPERYVEAFAQ   80 (217)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHT-TCCSEEEEEEESSSGGGGHHHHHH
T ss_pred             cEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHh-cCCCceEeEEEecCHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999998 599999999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+++++||+|+.+                                           ++.+.++.|++.|++.|++++|+
T Consensus        81 ~ga~~i~~H~E~~~-------------------------------------------~~~~~i~~i~~~g~~~Gial~p~  117 (217)
T d2flia1          81 AGADIMTIHTESTR-------------------------------------------HIHGALQKIKAAGMKAGVVINPG  117 (217)
T ss_dssp             HTCSEEEEEGGGCS-------------------------------------------CHHHHHHHHHHTTSEEEEEECTT
T ss_pred             cCCcEEEecccccc-------------------------------------------CHHHHHHHHHhcCCeEEEEecCC
Confidence            99999999999987                                           77889999999999999999999


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh----CCCccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~----~~~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      |+++.+.++++.+|.+++|+++||++||+|.+..++|+++++++    .+++.++||||||.+|+..+.++|++.   ||
T Consensus       118 T~~~~~~~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gs  197 (217)
T d2flia1         118 TPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGS  197 (217)
T ss_dssp             SCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESH
T ss_pred             cchhHHHhHHhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEch
Confidence            99999999999999999999999999999999999999999865    567899999999999999999999996   88


Q ss_pred             cccc-cCHHHHHHHHHh
Q psy11600        239 QKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       239 q~F~-~~~~~kI~~l~~  254 (277)
                      ..|. ++..+.+++||+
T Consensus       198 aif~~~d~~~~i~~lr~  214 (217)
T d2flia1         198 YLFKASDLVSQVQTLRT  214 (217)
T ss_dssp             HHHTSSCHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            8887 678888998886

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=6e-51  Score=357.52  Aligned_cols=207  Identities=47%  Similarity=0.851  Sum_probs=194.3

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      .+|+|||+|+|+.+|+++++++++.|+||+|+|||||+||||++||++.++++|+ +++.++|+|||+.+|.++++.+.+
T Consensus         2 ~kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~t~~~~~i~~i~~-~~~~~~dvHLMv~~p~~~i~~~~~   80 (220)
T d1h1ya_           2 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRK-HTKAYLDCHLMVTNPSDYVEPLAK   80 (220)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHT-TCCSEEEEEEESSCGGGGHHHHHH
T ss_pred             cEEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCccccccccCchhhhhhhh-hcchhhhhHHHhcchhhhhHHhhh
Confidence            4799999999999999999999999999999999999999999999999999998 599999999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+++++||+|+...                                          +...+++.|++.|+++|++++|+
T Consensus        81 ~g~~~I~~H~E~~~~------------------------------------------~~~~~i~~i~~~g~~~Glal~p~  118 (220)
T d1h1ya_          81 AGASGFTFHIEVSRD------------------------------------------NWQELIQSIKAKGMRPGVSLRPG  118 (220)
T ss_dssp             HTCSEEEEEGGGCTT------------------------------------------THHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccceeeecccccch------------------------------------------hHHHHHHHHHHcCCCcceeeccc
Confidence            999999999998641                                          46678899999999999999999


Q ss_pred             CCHHhHHHHHhh---cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        166 TPVDVIAEYIES---ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       166 t~~~~i~~~i~~---~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      ||++.+++++..   +|++++|+++||++||+|++.+++||++++++++++.|+||||||.+|+..+.++|++.   ||.
T Consensus       119 t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~  198 (220)
T d1h1ya_         119 TPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSS  198 (220)
T ss_dssp             SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHH
T ss_pred             cchhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEECHH
Confidence            999999999854   78999999999999999999999999999999999999999999999999999999996   888


Q ss_pred             ccc-cCHHHHHHHHHhh
Q psy11600        240 KFM-QDMMPKVKWLREN  255 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~~  255 (277)
                      .|. ++..+.++++|+.
T Consensus       199 if~~~d~~~~i~~lr~~  215 (220)
T d1h1ya_         199 IFGAAEPGEVISALRKS  215 (220)
T ss_dssp             HHTSSCHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHH
Confidence            887 5788888888863

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=4e-51  Score=358.79  Aligned_cols=208  Identities=36%  Similarity=0.645  Sum_probs=189.8

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMAD   85 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~   85 (277)
                      ++|+|||+|+|+.+|+++++++++.|+||+|+|||||+||||++||+++++++|+ +|++++|+||||.||.+|++.+.+
T Consensus         3 ~~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~~~~~~i~~-~t~~~~dvHLMv~~P~~~i~~~~~   81 (221)
T d1tqja_           3 IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRP-LTKKTLDVHLMIVEPEKYVEDFAK   81 (221)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGG-GCCSEEEEEEESSSGGGTHHHHHH
T ss_pred             cEEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCccccCcHhHHhhhh-ccCcceeeeEEEeCHHHHHHHHhh
Confidence            6799999999999999999999999999999999999999999999999999997 599999999999999999999999


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      +|+++++||+|+....                                         +..+.++.+++.|+++|++++|+
T Consensus        82 ~g~~~i~~H~E~~~~~-----------------------------------------~~~~~~~~i~~~g~~~Gial~p~  120 (221)
T d1tqja_          82 AGADIISVHVEHNASP-----------------------------------------HLHRTLCQIRELGKKAGAVLNPS  120 (221)
T ss_dssp             HTCSEEEEECSTTTCT-----------------------------------------THHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccceEEEEeeccccCh-----------------------------------------hhHHHHHHHHHCCCCEEEEecCC
Confidence            9999999999975410                                         46788899999999999999999


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhh----CCCccEEEeCCCCcCcHHHHHHccCCC---CC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKCLTGF---GG  238 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~----~~~~~i~vdGgV~~~tv~~~~~~gpg~---gg  238 (277)
                      |+++.+.+|++.+|++++|+++||++||+|.+++++||++++++    .+++.|+||||||.+|+..+.++|++.   ||
T Consensus       121 T~~~~l~~~l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS  200 (221)
T d1tqja_         121 TPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGS  200 (221)
T ss_dssp             CCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESH
T ss_pred             CcHHHHHHHHhhhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEECh
Confidence            99999999999999999999999999999999999999998775    567899999999999999999999996   88


Q ss_pred             cccc-cCHHHHHHHHHhh
Q psy11600        239 QKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       239 q~F~-~~~~~kI~~l~~~  255 (277)
                      ..|. ++..+.++++|..
T Consensus       201 ~if~~~d~~~~i~~lr~~  218 (221)
T d1tqja_         201 AVFNAPNYAEAIAGVRNS  218 (221)
T ss_dssp             HHHTSSCHHHHHHHHHTC
T ss_pred             HHhCCCCHHHHHHHHHhc
Confidence            8887 5788888888853

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.9e-51  Score=357.35  Aligned_cols=209  Identities=38%  Similarity=0.669  Sum_probs=190.5

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHH
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMA   84 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~   84 (277)
                      +.+|+|||+|+|+.+|+++++++++.|+||+|+|||||+||||++||++.++++|+.+|++++|+|||+.||++|++.+.
T Consensus         2 ~~iIspSil~~d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~   81 (221)
T d1tqxa_           2 KAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLK   81 (221)
T ss_dssp             CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCT
T ss_pred             cceeehhhhccCHHHHHHHHHHHHHcCCCEEEEECccCcCcCccccChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhh
Confidence            45699999999999999999999999999999999999999999999999999999778999999999999999999999


Q ss_pred             hcCCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC
Q psy11600         85 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP  164 (277)
Q Consensus        85 ~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p  164 (277)
                      ++|++.+|+|.+..+..                                         ...+.++.+++.|+++|++++|
T Consensus        82 ~~~~~~i~~~~~~~~~~-----------------------------------------~~~~~i~~i~~~g~~~Gial~p  120 (221)
T d1tqxa_          82 TSNQLTFHFEALNEDTE-----------------------------------------RCIQLAKEIRDNNLWCGISIKP  120 (221)
T ss_dssp             TSSEEEEEGGGGTTCHH-----------------------------------------HHHHHHHHHHTTTCEEEEEECT
T ss_pred             hcCceeEEeehhccccc-----------------------------------------hhhHHHHHHHhcCCeEEEeecc
Confidence            99999997776654400                                         2334566778889999999999


Q ss_pred             CCCHHhHHHHHh--hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCc
Q psy11600        165 KTPVDVIAEYIE--SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQ  239 (277)
Q Consensus       165 ~t~~~~i~~~i~--~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq  239 (277)
                      .|+++.+.+++.  .+|++++|+++||++||+|.+.+++||+++++.++++.|+||||||.+|++.+.++|++.   ||.
T Consensus       121 ~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~  200 (221)
T d1tqxa_         121 KTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTS  200 (221)
T ss_dssp             TSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHH
T ss_pred             ccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCEEEEChH
Confidence            999999999994  599999999999999999999999999999999999999999999999999999999996   888


Q ss_pred             ccc-cCHHHHHHHHHh
Q psy11600        240 KFM-QDMMPKVKWLRE  254 (277)
Q Consensus       240 ~F~-~~~~~kI~~l~~  254 (277)
                      .|. ++..+.+++||+
T Consensus       201 if~~~d~~~~i~~Lr~  216 (221)
T d1tqxa_         201 IFNAEDPKYVIDTMRV  216 (221)
T ss_dssp             HHTCSSHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHH
Confidence            887 578888888886

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.95  E-value=3.5e-28  Score=213.21  Aligned_cols=166  Identities=23%  Similarity=0.315  Sum_probs=140.3

Q ss_pred             CCCeeeeeeeccCcH---HhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHH
Q psy11600         63 PKAFFETHMMVQNPQ---QWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEP  125 (277)
Q Consensus        63 ~~~~~d~Hlmv~~p~---~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~  125 (277)
                      .++.+...++..|..   ++++.+.++|+||+  |+|+|||        |+.+++++|+.+..++|+      |.+|++.
T Consensus         9 ~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~i--HiDImDG~Fvpn~t~~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~   86 (230)
T d1rpxa_           9 SDIIVSPSILSANFSKLGEQVKAIEQAGCDWI--HVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPD   86 (230)
T ss_dssp             TSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCE--EEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHH
T ss_pred             CCeEEEcchhhcCHHHHHHHHHHHHHcCCCEE--EEeCccCCcCCccccChHHHhhhhhccCceeeeeeeecchhhhHHH
Confidence            467889999998754   56888899999999  9999997        999999999999887765      9999999


Q ss_pred             HHhcCCCeEEeecCCCCChH--HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhH
Q psy11600        126 MADANVDQYTFHVEPVDNVP--QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKV  203 (277)
Q Consensus       126 ~~~~g~d~it~H~E~~~~~~--~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI  203 (277)
                      ++++|+++||||+|   +..  ++.+.+                     .+++..++..++++||+|+           +
T Consensus        87 ~~~~g~~~i~~H~E---~~~~~~~~~~i---------------------~~ik~~g~k~Gialnp~T~-----------~  131 (230)
T d1rpxa_          87 FIKAGADIVSVHCE---QSSTIHLHRTI---------------------NQIKSLGAKAGVVLNPGTP-----------L  131 (230)
T ss_dssp             HHHTTCSEEEEECS---TTTCSCHHHHH---------------------HHHHHTTSEEEEEECTTCC-----------G
T ss_pred             HhhcccceeEEecc---ccccccHHHHH---------------------HHHHHcCCeEEEEeCCCCC-----------H
Confidence            99999999999999   543  344444                     4677888889999999998           4


Q ss_pred             HHHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh----CCCCeEEEeCCCCccCHHHhh
Q psy11600        204 KWLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       204 ~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~----~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.+.++.+.+|.++.|+|           .||||||.|.+.+++||++++++    .+++.|+||||||.+|++.++
T Consensus       132 ~~l~~~l~~vD~VllM~V-----------~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~  197 (230)
T d1rpxa_         132 TAIEYVLDAVDLVLIMSV-----------NPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVI  197 (230)
T ss_dssp             GGGTTTTTTCSEEEEESS-----------CTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEe-----------cCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHH
Confidence            555666777888875555           49999999999999999998764    568999999999999999875

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.95  E-value=8e-28  Score=209.34  Aligned_cols=164  Identities=21%  Similarity=0.337  Sum_probs=138.2

Q ss_pred             CeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHH
Q psy11600         65 AFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMA  127 (277)
Q Consensus        65 ~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~  127 (277)
                      +++...++..|   ++++++.+.++|+|++  |+|+|||        |++.++++|+.+..++|+      |++|++.++
T Consensus         2 ~kIspSil~~d~~~l~~~i~~~~~~g~d~i--HiDimDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~   79 (217)
T d2flia1           2 LKIAPSILAADYANFASELARIEETDAEYV--HIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFA   79 (217)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEE--EEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHH
T ss_pred             cEEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEEcccCcCCCccccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHH
Confidence            35667777776   4567889999999999  9999987        999999999999877665      999999999


Q ss_pred             hcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHH
Q psy11600        128 DANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR  207 (277)
Q Consensus       128 ~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~  207 (277)
                      ++||++|+||+|   +..++.+.++                     +++..++..+++++|+|+           ++.+.
T Consensus        80 ~~ga~~i~~H~E---~~~~~~~~i~---------------------~i~~~g~~~Gial~p~T~-----------~~~~~  124 (217)
T d2flia1          80 QAGADIMTIHTE---STRHIHGALQ---------------------KIKAAGMKAGVVINPGTP-----------ATALE  124 (217)
T ss_dssp             HHTCSEEEEEGG---GCSCHHHHHH---------------------HHHHTTSEEEEEECTTSC-----------GGGGG
T ss_pred             HcCCcEEEeccc---cccCHHHHHH---------------------HHHhcCCeEEEEecCCcc-----------hhHHH
Confidence            999999999999   8877766665                     567778888899999998           34555


Q ss_pred             hhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh----CCCCeEEEeCCCCccCHHHhh
Q psy11600        208 ENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       208 ~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~----~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ++.+.++..+-|+|           +|||+||.|.+.+++||+++|++    ++++.|+||||||.+|++.++
T Consensus       125 ~~l~~id~vliM~V-----------~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~  186 (217)
T d2flia1         125 PLLDLVDQVLIMTV-----------NPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACY  186 (217)
T ss_dssp             GGTTTCSEEEEESS-----------CTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHH
T ss_pred             hHHhhcCEEEEEEE-----------cCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHH
Confidence            66677787764444           49999999999999999999864    567899999999999999875

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.95  E-value=1.9e-27  Score=207.33  Aligned_cols=166  Identities=32%  Similarity=0.475  Sum_probs=137.8

Q ss_pred             eeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHh
Q psy11600         66 FFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMAD  128 (277)
Q Consensus        66 ~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~  128 (277)
                      ++...++..|   ++++++.+.++|+|++  |+|+|||        |++.++++|+.+..++|+      |.+|++.+++
T Consensus         3 kI~pSil~ad~~~l~~ei~~l~~~~~d~i--HiDimDg~Fvpn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~   80 (220)
T d1h1ya_           3 KIAPSMLSSDFANLAAEADRMVRLGADWL--HMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAK   80 (220)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEE--EEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHH
T ss_pred             EEEhhhhhcCHHHHHHHHHHHHHcCCCEE--EEeeecCccccccccCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhh
Confidence            4556666665   5667888899999999  9999987        999999999999887664      9999999999


Q ss_pred             cCCCeEEeecCCCCChHH-HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHH
Q psy11600        129 ANVDQYTFHVEPVDNVPQ-VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLR  207 (277)
Q Consensus       129 ~g~d~it~H~E~~~~~~~-~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~  207 (277)
                      +|+++|+||+|   +..+ ..+++                     .+++..+...+++++|+|+.        +.++.+.
T Consensus        81 ~g~~~I~~H~E---~~~~~~~~~i---------------------~~i~~~g~~~Glal~p~t~~--------~~~~~~l  128 (220)
T d1h1ya_          81 AGASGFTFHIE---VSRDNWQELI---------------------QSIKAKGMRPGVSLRPGTPV--------EEVFPLV  128 (220)
T ss_dssp             HTCSEEEEEGG---GCTTTHHHHH---------------------HHHHHTTCEEEEEECTTSCG--------GGGHHHH
T ss_pred             cccceeeeccc---ccchhHHHHH---------------------HHHHHcCCCcceeeccccch--------hHHHHHH
Confidence            99999999999   5433 33333                     45677888888999999983        3455555


Q ss_pred             hhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        208 ENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       208 ~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +..+.++..+.|+|           +|||+||.|.+.+++||+++|++++++.|+||||||.+|++.++
T Consensus       129 ~~~~~~d~vlim~v-----------~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~  186 (220)
T d1h1ya_         129 EAENPVELVLVMTV-----------EPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA  186 (220)
T ss_dssp             HSSSCCSEEEEESS-----------CTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHH
T ss_pred             hcccccceEEEEec-----------CCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHH
Confidence            55566788765444           49999999999999999999999999999999999999999876

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.94  E-value=2.7e-27  Score=206.47  Aligned_cols=165  Identities=25%  Similarity=0.358  Sum_probs=131.6

Q ss_pred             CCeeeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHH
Q psy11600         64 KAFFETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPM  126 (277)
Q Consensus        64 ~~~~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~  126 (277)
                      +..+...++..|   ++++++.+.++|+||+  |+|+|||        |+.+++++|+.|..++|+      |++|++.|
T Consensus         2 ~~~IspSil~~d~~~l~~~i~~l~~~g~d~i--HiDImDG~Fvpn~t~~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~   79 (221)
T d1tqja_           2 NIVVAPSILSADFSRLGEEIKAVDEAGADWI--HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDF   79 (221)
T ss_dssp             CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEE--EEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHH
T ss_pred             CcEEEechhccCHHHHHHHHHHHHHcCCCEE--EEECccCCccCccccCcHhHHhhhhccCcceeeeEEEeCHHHHHHHH
Confidence            456777888887   4557888889999999  9999997        999999999999877665      99999999


Q ss_pred             HhcCCCeEEeecCCCCChH--HHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHH
Q psy11600        127 ADANVDQYTFHVEPVDNVP--QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVK  204 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~--~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~  204 (277)
                      +++|++.++||+|   +..  ++.+.+                     ..+++.++..+++++|+|+.           +
T Consensus        80 ~~~g~~~i~~H~E---~~~~~~~~~~~---------------------~~i~~~g~~~Gial~p~T~~-----------~  124 (221)
T d1tqja_          80 AKAGADIISVHVE---HNASPHLHRTL---------------------CQIRELGKKAGAVLNPSTPL-----------D  124 (221)
T ss_dssp             HHHTCSEEEEECS---TTTCTTHHHHH---------------------HHHHHTTCEEEEEECTTCCG-----------G
T ss_pred             hhccceEEEEeec---cccChhhHHHH---------------------HHHHHCCCCEEEEecCCCcH-----------H
Confidence            9999999999999   543  234444                     45678888889999999984           3


Q ss_pred             HHHhhCCCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhh----CCCCeEEEeCCCCccCHHHhh
Q psy11600        205 WLRENYPTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       205 ~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~----~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      .+.++.+.++..+.|+|           .||||||.|.+++++||++++++    .+++.|+||||||.+|+++++
T Consensus       125 ~l~~~l~~~d~vlvM~V-----------~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~  189 (221)
T d1tqja_         125 FLEYVLPVCDLILIMSV-----------NPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVL  189 (221)
T ss_dssp             GGTTTGGGCSEEEEESS-----------CC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHH
T ss_pred             HHHHHHhhhcEEEEEEe-----------cCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHH
Confidence            44445556677765555           49999999999999999998764    568999999999999999875

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.93  E-value=6.3e-26  Score=197.71  Aligned_cols=164  Identities=26%  Similarity=0.373  Sum_probs=132.7

Q ss_pred             eeeeeeccC---cHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhC-CCcccc------hhhhhHHHHh
Q psy11600         67 FETHMMVQN---PQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAG-MKVGQV------LQDWIEPMAD  128 (277)
Q Consensus        67 ~d~Hlmv~~---p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~-~~~~d~------p~~~i~~~~~  128 (277)
                      +...++..|   ++++++.+.++|+||+  |+|+|||        |+..++++|+.+ +.++|+      |++|++.+++
T Consensus         5 IspSil~~d~~~l~~~i~~l~~~~~d~i--HiDimDG~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~   82 (221)
T d1tqxa_           5 IAPSVLASNISKLAEETQRMESLGAEWI--HLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT   82 (221)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCSEE--EEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT
T ss_pred             eehhhhccCHHHHHHHHHHHHHcCCCEE--EEECccCcCcCccccChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhh
Confidence            566677776   5567888999999999  9999987        999999999985 456654      9999999999


Q ss_pred             cCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHh
Q psy11600        129 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRE  208 (277)
Q Consensus       129 ~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~  208 (277)
                      +|++.+++|.| .++..++.+.++                     .+++.+...+++++|+|+.           +.+.+
T Consensus        83 ~~~~~i~~~~~-~~~~~~~~~~i~---------------------~i~~~g~~~Gial~p~t~~-----------~~~~~  129 (221)
T d1tqxa_          83 SNQLTFHFEAL-NEDTERCIQLAK---------------------EIRDNNLWCGISIKPKTDV-----------QKLVP  129 (221)
T ss_dssp             SSEEEEEGGGG-TTCHHHHHHHHH---------------------HHHTTTCEEEEEECTTSCG-----------GGGHH
T ss_pred             cCceeEEeehh-ccccchhhHHHH---------------------HHHhcCCeEEEeecccccc-----------ccchh
Confidence            99999999876 113455655555                     4566777888999999983           33344


Q ss_pred             hC--CCccEEEeCCCCcCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        209 NY--PTLNIEVDGGVGPNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       209 ~~--~~~~i~vdGgV~~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ++  ..++.++.|+|           +|||+||.|.+.+++||+++|++++++.|+||||||.+|++.++
T Consensus       130 ~l~~~~~d~vlim~V-----------~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~  188 (221)
T d1tqxa_         130 ILDTNLINTVLVMTV-----------EPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISA  188 (221)
T ss_dssp             HHTTTCCSEEEEESS-----------CTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHH
T ss_pred             hcccccccEEEEEee-----------cccccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHH
Confidence            43  34777775555           49999999999999999999999999999999999999998875

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.7e-20  Score=156.11  Aligned_cols=199  Identities=12%  Similarity=0.110  Sum_probs=165.2

Q ss_pred             eec-cccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh-HHHHHhcC
Q psy11600         10 PSI-LNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW-IEPMADAN   87 (277)
Q Consensus        10 ~s~-~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~-i~~l~~ag   87 (277)
                      |.+ +|+|..++++.++.+++.+-   |+|+++.+|.++++||++.++++|+.+|+.++..|++..++.++ .+.+.++|
T Consensus         2 p~l~vAlD~~~~~~~~~~~~~~~~---~vdiikig~~~~~~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~g   78 (213)
T d1q6oa_           2 PMLQVALDNQTMDSAYETTRLIAE---EVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEAN   78 (213)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHGG---GCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred             CcEEEEecCCCHHHHHHHHHhcCC---CccEEEeCeeccccCCHHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcC
Confidence            555 78899999999999998753   89999999999999999999999998899999999999987765 67788999


Q ss_pred             CCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCC
Q psy11600         88 VDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTP  167 (277)
Q Consensus        88 ~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~  167 (277)
                      +|++|+|.+...   .                                       ......+.+++.|.+.++.+.+.++
T Consensus        79 ad~vtvh~~~g~---~---------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~  116 (213)
T d1q6oa_          79 ADWVTVICCADI---N---------------------------------------TAKGALDVAKEFNGDVQIELTGYWT  116 (213)
T ss_dssp             CSEEEEETTSCH---H---------------------------------------HHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred             CCEEEEeccCCc---h---------------------------------------HHHHHHHHHHHcCCceecccCCCCC
Confidence            999999976532   1                                       2445667778888888888888888


Q ss_pred             HHhHHHHHhh-c-CceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc
Q psy11600        168 VDVIAEYIES-A-DLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM  242 (277)
Q Consensus       168 ~~~i~~~i~~-~-d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~  242 (277)
                      .+...++... . .++..++.+||+.+|.+....++++++.++  ..+.+.++||++..|.+++.++|+++   |+..|.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~--~~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~  194 (213)
T d1q6oa_         117 WEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD  194 (213)
T ss_dssp             HHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHT
T ss_pred             HHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhc--cCceEecCCCcCcCCHHHHHHcCCCEEEEChhhcC
Confidence            8877776654 3 344568889999999988888888887765  46788999999999999999999996   888887


Q ss_pred             -cCHHHHHHHHHhh
Q psy11600        243 -QDMMPKVKWLREN  255 (277)
Q Consensus       243 -~~~~~kI~~l~~~  255 (277)
                       ++..+.++++++.
T Consensus       195 a~dp~~a~~~~~~~  208 (213)
T d1q6oa_         195 AASPVEAARQFKRS  208 (213)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence             4777777777763

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.7e-08  Score=83.61  Aligned_cols=159  Identities=12%  Similarity=0.026  Sum_probs=107.8

Q ss_pred             cCcHHhHHHHHhc--CCCeEEEeccCC-CCCHHHHHHHHhhCC-Ccc-------cchhhhhHHHHhcCCCeEEeecCCCC
Q psy11600         74 QNPQQWIEPMADA--NVDQYTFHVEPV-DNVPQVIRQIKEAGM-KVG-------QVLQDWIEPMADANVDQYTFHVEPVD  142 (277)
Q Consensus        74 ~~p~~~i~~l~~a--g~d~i~~H~e~~-d~g~~~i~~i~~~~~-~~~-------d~p~~~i~~~~~~g~d~it~H~E~~~  142 (277)
                      .+.++.++.+.+.  ++|++-+|++.. ++|++.++.+|+.+. .++       |.|..+.+.++++|||++|+|.+   
T Consensus        11 ~~~~~~~~~~~~~~~~vdiikig~~~~~~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~---   87 (213)
T d1q6oa_          11 QTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICC---   87 (213)
T ss_dssp             SSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT---
T ss_pred             CCHHHHHHHHHhcCCCccEEEeCeeccccCCHHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEEEecc---
Confidence            4566666655443  678888887753 558999999999853 222       23888889999999999999998   


Q ss_pred             ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        143 NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       143 ~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      ...+.++...                    +.++..+...+++..+.++.        +....+...  .++..+    .
T Consensus        88 ~g~~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~~--~~~~~~----~  133 (213)
T d1q6oa_          88 ADINTAKGAL--------------------DVAKEFNGDVQIELTGYWTW--------EQAQQWRDA--GIGQVV----Y  133 (213)
T ss_dssp             SCHHHHHHHH--------------------HHHHHTTCEEEEEECSCCCH--------HHHHHHHHT--TCCEEE----E
T ss_pred             CCchHHHHHH--------------------HHHHHcCCceecccCCCCCH--------HHHHHHHHh--HHHHHH----H
Confidence            6555433322                    24556677777777766542        223333322  222222    1


Q ss_pred             cCcHHHHHHccCCCCCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhhC
Q psy11600        223 PNTIDECAKCLTGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK  277 (277)
Q Consensus       223 ~~tv~~~~~~gpg~ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~~  277 (277)
                      .++.      .+|++|+.+.+..++++++.+..  .+.+.+|||++.+|++++.+
T Consensus       134 ~~~~------~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~~gGi~~~~~~~~~~  180 (213)
T d1q6oa_         134 HRSR------DAQAAGVAWGEADITAIKRLSDM--GFKVTVTGGLALEDLPLFKG  180 (213)
T ss_dssp             ECCH------HHHHTTCCCCHHHHHHHHHHHHT--TCEEEEESSCCGGGGGGGTT
T ss_pred             HHhc------ccCcCCeeCCHHHHHHHHHhhcc--CceEecCCCcCcCCHHHHHH
Confidence            2333      47888999998889999888754  57799999999999987653

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.64  E-value=1.1e-08  Score=86.09  Aligned_cols=186  Identities=14%  Similarity=0.201  Sum_probs=117.9

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcH----HhHHHHHh
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQ----QWIEPMAD   85 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~----~~i~~l~~   85 (277)
                      ++|+|..++++.++.+++.+ ++  +|+..  ..|.  ..+|++.|++||+. +++++-++++..|-.    .+++.+.+
T Consensus         3 ~vALD~~~~~~a~~~~~~l~-~~--v~~iKvG~~l~--~~~G~~~i~~l~~~-~~~~if~DlK~~Di~~t~~~~~~~~~~   76 (206)
T d2czda1           3 VLALDVYEGERAIKIAKSVK-DY--ISMIKVNWPLI--LGSGVDIIRRLKEE-TGVEIIADLKLADIPNTNRLIARKVFG   76 (206)
T ss_dssp             EEECCCCSHHHHHHHHHHHG-GG--CSEEEEEHHHH--HHHCTTHHHHHHHH-HCCEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHhC-Cc--ccEEEECHHHH--hhcCHHHHHHHHHh-cCCeEEEEeeeeeecccchheehhhcc
Confidence            57899999999999988863 54  67777  3566  45899999999986 577777777777743    45788889


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHHHhhCCCcc--cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG--QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI  162 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~--d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i  162 (277)
                      +|+|++|+|.   -+|+..++++++......  .+ .....+..           .+   ......+..+..+. .|+  
T Consensus        77 ~gad~~Tvh~---~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~-----------~~---~~~~~~~~a~~~~~-~g~--  136 (206)
T d2czda1          77 AGADYVIVHT---FVGRDSVMAVKELGEIIMVVEMSHPGALEFI-----------NP---LTDRFIEVANEIEP-FGV--  136 (206)
T ss_dssp             TTCSEEEEES---TTCHHHHHHHHTTSEEEEECCCCSGGGGTTT-----------GG---GHHHHHHHHHHHCC-SEE--
T ss_pred             ccccEEEeee---cccHHHHHHhhhcccceEEEeccCCcccccc-----------cH---HHHHHHHHHHhccc-ccc--
Confidence            9999999994   357888888877653321  11 11111000           00   11233333333220 011  


Q ss_pred             CCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhC-CCccEEEeC-CCCcCcHHHHHHccCCC---C
Q psy11600        163 KPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDG-GVGPNTIDECAKCLTGF---G  237 (277)
Q Consensus       163 ~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~-~~~~i~vdG-gV~~~tv~~~~~~gpg~---g  237 (277)
                                             +.+++..        +.++.+++.. +++.+.+.| |..-.|..+..++|+++   |
T Consensus       137 -----------------------~~~~~~~--------~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~Gad~iVvG  185 (206)
T d2czda1         137 -----------------------IAPGTRP--------ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVG  185 (206)
T ss_dssp             -----------------------ECCCSST--------HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEEC
T ss_pred             -----------------------cccccCc--------hhhhhhhhhhcccceEECCCccccCCCHHHHHHhCCCEEEEC
Confidence                                   1233332        3456666654 445565555 44456888889999997   7


Q ss_pred             Ccccc-cCHHHHHHHHHh
Q psy11600        238 GQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       238 gq~F~-~~~~~kI~~l~~  254 (277)
                      +..+. ++..+.++++++
T Consensus       186 R~I~~a~dP~~aa~~i~~  203 (206)
T d2czda1         186 RAIYNAPNPREAAKAIYD  203 (206)
T ss_dssp             HHHHTSSSHHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHH
Confidence            77777 477777777765

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=7.9e-08  Score=81.16  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             eeeccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH----hHHH
Q psy11600          9 GPSILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ----WIEP   82 (277)
Q Consensus         9 ~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~----~i~~   82 (277)
                      ++-++|+|..++++.++.+++.+ ++  +|+..  ..|.  ..+|++.|+++++.++ .++-.+++..|-.+    +++.
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~~-~~--v~~iKig~~l~--~~~G~~~v~~l~~~~~-~~i~~D~K~~DIg~t~~~~~~~   76 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEVR-EY--IDTVKIGYPLV--LSEGMDIIAEFRKRFG-CRIIADFAVADIPETNEKICRA   76 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHHT-TT--CSEEEEEHHHH--HHHCTHHHHHHHHHHC-CEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEecCCCHHHHHHHHHHhC-CC--CcEEEECHHHH--HhcCHHHHHHHHHhcc-cceehhhhhhccccHHHHhHhh
Confidence            45688999999999999888874 54  55666  2344  5689999999998755 56778899888654    4677


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                      +.++|+|++|+|.-   .|+..+++..+
T Consensus        77 ~~~~gad~~TVh~~---~g~~~i~~~~~  101 (212)
T d1km4a_          77 TFKAGADAIIVHGF---PGADSVRACLN  101 (212)
T ss_dssp             HHHTTCSEEEEEST---TCHHHHHHHHH
T ss_pred             hccccccEEEEecc---CChHHHHHHHH
Confidence            77899999999953   35556665543

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.00017  Score=60.77  Aligned_cols=93  Identities=14%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             eeeccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH----hHHH
Q psy11600          9 GPSILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ----WIEP   82 (277)
Q Consensus         9 ~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~----~i~~   82 (277)
                      +|=|+|+|..++++.++.+++. -++  +|+..  ..++  ..+|++.++.|++  ++.++-.+++..|..+    +++.
T Consensus         4 ~~iivALD~~~~~eal~i~~~l-~~~--i~~iKiG~~l~--~~~G~~~i~~l~~--~~~~if~D~K~~DI~nt~~~~~~~   76 (231)
T d1eixa_           4 SPVVVALDYHNRDDALAFVDKI-DPR--DCRLKVGKEMF--TLFGPQFVRELQQ--RGFDIFLDLKFHDIPNTAAHAVAA   76 (231)
T ss_dssp             CCEEEEECCSSHHHHHHHHTTS-CTT--TCEEEEEHHHH--HHHHHHHHHHHHH--TTCCEEEEEEECSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHh-CCc--ceEEEECHHHH--hhcCHHHHHHHHh--cCchhhHhhHhhcCcHHHHHHHHh
Confidence            4567899999999999988876 333  66666  2334  3489999999997  4777888899999655    6788


Q ss_pred             HHhcCCCeEEEeccCCCCCHHHHHHHHhh
Q psy11600         83 MADANVDQYTFHVEPVDNVPQVIRQIKEA  111 (277)
Q Consensus        83 l~~ag~d~i~~H~e~~d~g~~~i~~i~~~  111 (277)
                      +.+.|++++|+|.-   +|+..++.+.+.
T Consensus        77 ~~~~~~~~~tvh~~---~g~~~l~~~~~~  102 (231)
T d1eixa_          77 AADLGVWMVNVHAS---GGARMMTAAREA  102 (231)
T ss_dssp             HHHHTCSEEEEBGG---GCHHHHHHHHHT
T ss_pred             hhcccceEEEEecc---CcHHHHHHHHHh
Confidence            88889999999953   466777666543

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=0.00024  Score=60.66  Aligned_cols=207  Identities=18%  Similarity=0.204  Sum_probs=122.2

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEE-eccCCCC----CHHHHHHHHhh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTF-HVEPVDN----VPQVIRQIKEA  111 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~~d~----g~~~i~~i~~~  111 (277)
                      +|++||..|....|        ++         +....+|.+.++.|.+.|+|++|+ ..+....    -..+++.+.+.
T Consensus        10 Idi~~g~~Vk~~~~--------~~---------~~~~gdP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~   72 (253)
T d1thfd_          10 LDVKDGRVVKGSNF--------EN---------LRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQ   72 (253)
T ss_dssp             EEEETTEECCCSCC--------TT---------SSCTTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCEEEECCCC--------ce---------eEECCCHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhc
Confidence            79999999864333        11         123679999999999999999943 1222212    33566777776


Q ss_pred             CCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccc-eeeC-------------CC-----CC
Q psy11600        112 GMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVG-LAIK-------------PK-----TP  167 (277)
Q Consensus       112 ~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g-~~i~-------------p~-----t~  167 (277)
                      +..|+.+     -.+.++.+.++||+.|.+..++-+++..+.+..+..|-+.= +++.             -+     ..
T Consensus        73 ~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~  152 (253)
T d1thfd_          73 IDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGIL  152 (253)
T ss_dssp             CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             cCccceeecccccchhhhhHHhcCCCEEEEChHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchh
Confidence            7777766     46678899999999999987632234445566666664321 1111             11     11


Q ss_pred             H-HhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC--CCcccc
Q psy11600        168 V-DVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF--GGQKFM  242 (277)
Q Consensus       168 ~-~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~--ggq~F~  242 (277)
                      + +.+..+.+. ++-++++.+.-.-..+.+..++++++   ++. .++.+.+-||++- +-+.++.+.|...  .|..|.
T Consensus       153 ~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i---~~~-~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~  228 (253)
T d1thfd_         153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFV---RPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFH  228 (253)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHH---GGG-CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             HHHHHHHHHhccCCEEEEEEecccCccCCccccccccc---ccc-ccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHH
Confidence            2 223333322 56688888887544445555555444   332 4567889999973 4466666665543  344454


Q ss_pred             c--CHHHHHHHHHhhCCCCeEEEeC
Q psy11600        243 Q--DMMPKVKWLRENYPTLNIEVDG  265 (277)
Q Consensus       243 ~--~~~~kI~~l~~~~~~~~I~VDG  265 (277)
                      .  -.++.+++.-.. .++.+..||
T Consensus       229 ~~~~~~~~~k~~l~~-~~i~vr~~~  252 (253)
T d1thfd_         229 FREIDVRELKEYLKK-HGVNVRLEG  252 (253)
T ss_dssp             TTCSCHHHHHHHHHH-TTCCCCCTT
T ss_pred             cCCCCHHHHHHHHHH-CCCcEeCCC
Confidence            3  355555543222 134555555

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=97.49  E-value=0.00061  Score=56.23  Aligned_cols=174  Identities=14%  Similarity=0.124  Sum_probs=95.9

Q ss_pred             cHHHHHHHHHHcCCCEEEEe---ccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEec
Q psy11600         19 NLHSESQNLLDSGADYLHLD---VMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHV   95 (277)
Q Consensus        19 ~l~~~~~~l~~~~~~~~h~D---imDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~   95 (277)
                      .+-+.++++.+.|++++|+=   ..+..+.   .+. ..++.+.+. .+.++-+    .+.   ++...+.|+|.+  |+
T Consensus        18 ~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~---~~a-~~l~~i~~~-~~~~lii----nd~---~~lA~~~~adGv--Hl   83 (206)
T d1xi3a_          18 PEVESVREALEGGATAIQMRIKNAPTREMY---EIG-KTLRQLTRE-YDALFFV----DDR---VDVALAVDADGV--QL   83 (206)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSCCHHHHH---HHH-HHHHHHHHH-TTCEEEE----ESC---HHHHHHHTCSEE--EE
T ss_pred             CHHHHHHHHHHcCCCEEEEcCCCCCHHHHH---HHH-HHHHHHHHH-cCCeEEe----chh---HHHHHhccCceE--ee
Confidence            34577888888999999983   3333332   122 223334333 3444443    343   345566799999  55


Q ss_pred             cCCCCCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHH
Q psy11600         96 EPVDNVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI  175 (277)
Q Consensus        96 e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i  175 (277)
                      ...+.                                          . ..   ..+..+-..-++.... +.+.+....
T Consensus        84 ~~~~~------------------------------------------~-~~---~~~~~~~~~iig~s~h-~~~e~~~a~  116 (206)
T d1xi3a_          84 GPEDM------------------------------------------P-IE---VAKEIAPNLIIGASVY-SLEEALEAE  116 (206)
T ss_dssp             CTTSC------------------------------------------C-HH---HHHHHCTTSEEEEEES-SHHHHHHHH
T ss_pred             ccccc------------------------------------------c-Hh---hhhhcccccccccccC-CHHHHHHHH
Confidence            44341                                          1 11   1122222222333222 333333332


Q ss_pred             -hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCcccc-cCHHHHHH
Q psy11600        176 -ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFM-QDMMPKVK  250 (277)
Q Consensus       176 -~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~  250 (277)
                       ..+|++.+-.+.|..+-+...+--++.++++.+. .++-+...||++..++.++.+.|+++   .+..|. ++..+.++
T Consensus       117 ~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~-~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~  195 (206)
T d1xi3a_         117 KKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-VKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATE  195 (206)
T ss_dssp             HHTCSEEEEECSSCC----CCCCCHHHHHHHHHHH-CSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHH
T ss_pred             hcCCCEEEeccccccccccccccccHHHHHHHHHh-cCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHH
Confidence             3467777666655432222223345566666554 34678899999999999999999986   556666 46666677


Q ss_pred             HHHh
Q psy11600        251 WLRE  254 (277)
Q Consensus       251 ~l~~  254 (277)
                      ++++
T Consensus       196 ~l~~  199 (206)
T d1xi3a_         196 ELRK  199 (206)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.48  E-value=0.006  Score=52.23  Aligned_cols=182  Identities=15%  Similarity=0.209  Sum_probs=129.5

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQV  104 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~  104 (277)
                      +..+.+|+. -+.-+-.+++..+|..     .++.+.++|+|.+-+-+   |+ .||                   ..++
T Consensus         6 ~~f~~~~~~-~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~   84 (261)
T d1rd5a_           6 DTMAALMAK-GKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEM   84 (261)
T ss_dssp             HHHHHHHHT-TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHc-CCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhh
Confidence            355667765 4667889999998865     37788899999996553   32 244                   5667


Q ss_pred             HHHHHhhCCCcc-cc------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhh
Q psy11600        105 IRQIKEAGMKVG-QV------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES  177 (277)
Q Consensus       105 i~~i~~~~~~~~-d~------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~  177 (277)
                      ++.+|+.+..++ .+      ...+++.+.++|+|-+.+.=-|-+....+.+..++.|+..=.=+.|.|+-+.+..+.+.
T Consensus        85 ~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~  164 (261)
T d1rd5a_          85 LREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKA  164 (261)
T ss_dssp             HHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHH
T ss_pred             hhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhc
Confidence            777776665543 22      35678999999999998864333345667788888887777778899999999998876


Q ss_pred             c-CceEEEEecCCCCCch-hhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        178 A-DLVLIMTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       178 ~-d~vl~mav~Pgt~gq~-~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      . +++-.++..+=|+.+. +..++.+.++.+++.. ++-+.+=-||. .+.++.+.+.|+|.
T Consensus       165 a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDG  225 (261)
T d1rd5a_         165 SEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADG  225 (261)
T ss_dssp             CCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             CcchhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCE
Confidence            4 7777777666555443 4456666778888774 67788877774 47777777777874

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.33  E-value=0.00058  Score=56.61  Aligned_cols=66  Identities=11%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             cCcHHhHHHHHhc--CCCeEEEeccC-CCCCHHHHHHHHhhCCC-------cccch---hhhhHHHHhcCCCeEEeecC
Q psy11600         74 QNPQQWIEPMADA--NVDQYTFHVEP-VDNVPQVIRQIKEAGMK-------VGQVL---QDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        74 ~~p~~~i~~l~~a--g~d~i~~H~e~-~d~g~~~i~~i~~~~~~-------~~d~p---~~~i~~~~~~g~d~it~H~E  139 (277)
                      .++++.++.+.+.  .++++-+|.+. ...|++.|+++++....       .+|+|   ..+++.+.++|+|++|+|.-
T Consensus        12 ~~~~~a~~l~~~~~~~v~~iKig~~l~~~~G~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~   90 (212)
T d1km4a_          12 MNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGF   90 (212)
T ss_dssp             SSHHHHHHHHHHHTTTCSEEEEEHHHHHHHCTHHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred             CCHHHHHHHHHHhCCCCcEEEECHHHHHhcCHHHHHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEecc
Confidence            4555555444443  46788777654 24588999999886432       22445   77899999999999999987

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.29  E-value=0.0004  Score=58.69  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHH----hHHHHHh
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQ----WIEPMAD   85 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~----~i~~l~~   85 (277)
                      |.|+|..++.+.++.+++.+ ++  +|+..  ..|+  ..+|++.+++||+.  +.++-.+++..|-.+    .+..+.+
T Consensus         7 IvALD~~~~~~al~i~~~~~-~~--i~~iKvG~~l~--~~~G~~~i~~l~~~--~~~IflD~K~~DIgnTv~~~~~~~~~   79 (237)
T d1dbta_           7 IIALDFASAEETLAFLAPFQ-QE--PLFVKVGMELF--YQEGPSIVKQLKER--NCELFLDLKLHDIPTTVNKAMKRLAS   79 (237)
T ss_dssp             EEECCCSSHHHHHHHTGGGT-TS--CCEEEECHHHH--HHHTHHHHHHHHHT--TCEEEEEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEeccCCHHHHHHHHHHcC-Cc--ccEEEECHHHH--hhcCHHHHHHHHhc--chheehhhhhccCchHHHHHHHhhhc
Confidence            68999999999998888763 44  66666  3344  45899999999985  466667899888654    3556667


Q ss_pred             cCCCeEEEeccCCCCCHHHHHHH
Q psy11600         86 ANVDQYTFHVEPVDNVPQVIRQI  108 (277)
Q Consensus        86 ag~d~i~~H~e~~d~g~~~i~~i  108 (277)
                      .|+|++|+|.-   +|+..++++
T Consensus        80 ~~~d~vtvh~~---~G~~~i~aa   99 (237)
T d1dbta_          80 LGVDLVNVHAA---GGKKMMQAA   99 (237)
T ss_dssp             TTCSEEEEEGG---GCHHHHHHH
T ss_pred             cccceEEeecc---cchHHHHHH
Confidence            79999999953   355555554

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.0025  Score=53.98  Aligned_cols=192  Identities=15%  Similarity=0.132  Sum_probs=116.9

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCC-------CHHHHHHHH
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDN-------VPQVIRQIK  109 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~-------g~~~i~~i~  109 (277)
                      +|++||..|.-..|.        +         +....+|.+.++.+.+.|+|++  |+--.++       ...+++.+.
T Consensus        10 IDi~~G~~Vk~~~~~--------~---------~~~~gdP~~~a~~~~~~g~dei--~iiDl~~~~~~~~~~~~~i~~i~   70 (251)
T d1ka9f_          10 LDVHAGRVVKGVNFV--------N---------LRDAGDPVEAARAYDEAGADEL--VFLDISATHEERAILLDVVARVA   70 (251)
T ss_dssp             EEEETTEETTCCCSS--------C---------CSSTTCHHHHHHHHHHHTCSCE--EEEECCSSTTCHHHHHHHHHHHH
T ss_pred             EEEECCEEEECccCC--------c---------eEECCCHHHHHHHHHHcCCCEE--EEEecccccccchhHHHHHHHHH
Confidence            899999998654441        1         1235799999999999999999  6432222       335677777


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCcccee--------------eCCC-----
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLA--------------IKPK-----  165 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~--------------i~p~-----  165 (277)
                      +.+..|+.+     -.+.++.+.++||+.|.+..++.+++.-+.+..+..|.+.-+.              .+.+     
T Consensus        71 ~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~  150 (251)
T d1ka9f_          71 ERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTG  150 (251)
T ss_dssp             TTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred             hccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCC
Confidence            777767766     4677889999999999997652223344445556666443222              1111     


Q ss_pred             CCHHh-HHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC--CCcc
Q psy11600        166 TPVDV-IAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF--GGQK  240 (277)
Q Consensus       166 t~~~~-i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~--ggq~  240 (277)
                      ..+.. +..+.+. ++-++++.+.-....+.+.-++++++...    .+..+..-||+.- +-+.++.+.|...  .|..
T Consensus       151 ~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~----~~~pii~~GGv~~~~dl~~l~~~g~~gviig~a  226 (251)
T d1ka9f_         151 LHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEA----VGVPVIASGGAGRMEHFLEAFQAGAEAALAASV  226 (251)
T ss_dssp             EEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHH----CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             ccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhh----cceeEEEecCCCCHHHHHHHHHCCCCEEEEhHH
Confidence            12223 3333322 56688888887555555555555555433    3467888999973 3445566665553  3444


Q ss_pred             cc--cCHHHHHHH
Q psy11600        241 FM--QDMMPKVKW  251 (277)
Q Consensus       241 F~--~~~~~kI~~  251 (277)
                      |.  .-.++.+++
T Consensus       227 l~~g~~~~~~~k~  239 (251)
T d1ka9f_         227 FHFGEIPIPKLKR  239 (251)
T ss_dssp             HHTTSSCHHHHHH
T ss_pred             HHcCCCCHHHHHH
Confidence            54  344455543

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.05  E-value=0.0015  Score=55.64  Aligned_cols=174  Identities=17%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             eccCcHHhHHHHHhcCCCeEEEecc---CCC-C---CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecC
Q psy11600         72 MVQNPQQWIEPMADANVDQYTFHVE---PVD-N---VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        72 mv~~p~~~i~~l~~ag~d~i~~H~e---~~d-~---g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E  139 (277)
                      .+.+|.+.++.+.+.|+|++  |+-   ... +   -..+++++.+.+..|+.+     -.+.++.+.++||+.|.+..+
T Consensus        30 ~~~dP~~~a~~~~~~gadei--~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~  107 (252)
T d1h5ya_          30 EVGDPVEMAVRYEEEGADEI--AILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA  107 (252)
T ss_dssp             EEECHHHHHHHHHHTTCSCE--EEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             ECCCHHHHHHHHHHCCCCEE--EEEeccccccccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEeccc
Confidence            34589999999999999999  532   222 2   235677787777778766     467788889999999999765


Q ss_pred             CCCChHHHHHHHHHhCCcc-ceeeC-------------CC-----CCHHhHHHHHhh--cCceEEEEecCCCCCchhhhh
Q psy11600        140 PVDNVPQVIRQIKEAGMKV-GLAIK-------------PK-----TPVDVIAEYIES--ADLVLIMTVEPGFGGQKFMQD  198 (277)
Q Consensus       140 ~~~~~~~~~~~I~~~g~~~-g~~i~-------------p~-----t~~~~i~~~i~~--~d~vl~mav~Pgt~gq~~~~~  198 (277)
                      +-.++.-+.+..+..|-++ -+++.             -+     .++..+.+.+..  ++-++++.+.-....+.+..+
T Consensus       108 ~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~  187 (252)
T d1h5ya_         108 AVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVE  187 (252)
T ss_dssp             HHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHH
T ss_pred             ccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHH
Confidence            2223333445556656331 11111             11     133333333333  456777777765444455555


Q ss_pred             hhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC--CCcccc--cCHHHHHHH
Q psy11600        199 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF--GGQKFM--QDMMPKVKW  251 (277)
Q Consensus       199 ~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~--ggq~F~--~~~~~kI~~  251 (277)
                      +++++..   . ....+..-||++ .+-+..+.+.|.+.  .|..|.  .-.++.+++
T Consensus       188 ~~~~i~~---~-~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~~~~~~lk~  241 (252)
T d1h5ya_         188 LIRRVAD---S-VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKR  241 (252)
T ss_dssp             HHHHHHH---H-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHH
T ss_pred             HHHHHHH---h-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCCCCHHHHHH
Confidence            5555543   3 247788999997 36666677776653  444444  344555554

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.04  E-value=0.023  Score=48.55  Aligned_cols=181  Identities=13%  Similarity=0.184  Sum_probs=120.5

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQV  104 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~  104 (277)
                      +..+++|++ -+.-+-.+++..+|..     .++.+.++|+|.+-+=+   |+ .||                   ..++
T Consensus         6 ~~f~~lk~~-~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~   84 (267)
T d1qopa_           6 NLFAQLNDR-REGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEM   84 (267)
T ss_dssp             HHHHHHHHT-TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHc-CCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhh
Confidence            355677765 4566888999999865     37778889999996552   33 244                   3467


Q ss_pred             HHHHHhhC-CCcc-cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHH
Q psy11600        105 IRQIKEAG-MKVG-QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIA  172 (277)
Q Consensus       105 i~~i~~~~-~~~~-d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~  172 (277)
                      ++.+|+.. ..|+ .|          .++|++...++|+|-+.+.=-|-+......+..++.|+..=.=+.|.|+-+.+.
T Consensus        85 ~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~  164 (267)
T d1qopa_          85 LAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLR  164 (267)
T ss_dssp             HHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHH
T ss_pred             hhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHH
Confidence            77777775 3344 22          478899999999998887632211334566777887766666678999999999


Q ss_pred             HHHhhcC-ceEEEEecCCCCCch--hhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC
Q psy11600        173 EYIESAD-LVLIMTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF  236 (277)
Q Consensus       173 ~~i~~~d-~vl~mav~Pgt~gq~--~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~  236 (277)
                      .+.+..+ ++-.++ .+|+.|..  +..++-+.++++++.- ++-+.|=-||.- +.+....+.++|.
T Consensus       165 ~i~~~a~gFiY~vs-~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADG  230 (267)
T d1qopa_         165 QVASYGRGYTYLLS-RSGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAG  230 (267)
T ss_dssp             HHHHHCCSCEEEES-SSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             HHHhhCchhhhhhc-ccccCCcccccchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCCCE
Confidence            9988764 444555 56765543  3455566677777654 566777677753 3344555667764

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.82  E-value=0.031  Score=47.23  Aligned_cols=169  Identities=12%  Similarity=0.156  Sum_probs=110.3

Q ss_pred             eeeeeeeccCcHH-----hHHHHHhcCCCeEEEec---cC-CCC-------------------CHHHHHHHHhhCCCcc-
Q psy11600         66 FFETHMMVQNPQQ-----WIEPMADANVDQYTFHV---EP-VDN-------------------VPQVIRQIKEAGMKVG-  116 (277)
Q Consensus        66 ~~d~Hlmv~~p~~-----~i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i~~i~~~~~~~~-  116 (277)
                      -+-.+++..+|..     .++.+ +.|+|.+-+-+   |+ .||                   ..++++.+|+.+..|+ 
T Consensus         6 ali~y~taG~P~~~~s~~~l~~l-~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~piv   84 (248)
T d1geqa_           6 SLIPYLTAGDPDKQSTLNFLLAL-DEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIV   84 (248)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHH-GGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEE
T ss_pred             ceEEEEcCcCCCHHHHHHHHHHH-HcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEE
Confidence            4677899998853     46665 45999885532   22 243                   4557778887765554 


Q ss_pred             cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEe
Q psy11600        117 QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTV  186 (277)
Q Consensus       117 d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav  186 (277)
                      .|          .++|++.++++|+|-+.+.==|-+....+....++.|+..=.-+.|.|+-+.+....+...-.+=+..
T Consensus        85 lm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs  164 (248)
T d1geqa_          85 LMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVS  164 (248)
T ss_dssp             EEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEEC
T ss_pred             EEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEe
Confidence            33          58899999999999988842111144567777888888888888999999999888777644444434


Q ss_pred             cCCCCCc-h-hhhhhhhhHHHHHhhCCCccEEEeCCCC-cCcHHHHHHccCCC
Q psy11600        187 EPGFGGQ-K-FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKCLTGF  236 (277)
Q Consensus       187 ~Pgt~gq-~-~~~~~l~kI~~l~~~~~~~~i~vdGgV~-~~tv~~~~~~gpg~  236 (277)
                      .+|+.|. . +..++.+.++++++. .++-+.|=-||. .+.+..+.+.++|.
T Consensus       165 ~~GvTG~~~~~~~~~~~~v~~vk~~-t~~Pv~vGFGI~~~e~v~~~~~~~ADG  216 (248)
T d1geqa_         165 LYGTTGAREEIPKTAYDLLRRAKRI-CRNKVAVGFGVSKREHVVSLLKEGANG  216 (248)
T ss_dssp             CC-------CCCHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             cccccccchhhhhhHHHHHHHHhhh-cccceeeecccCCHHHHHHHHhcCCCE
Confidence            5665443 2 445667778888876 356777766663 34555566667763

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0072  Score=50.33  Aligned_cols=172  Identities=13%  Similarity=0.090  Sum_probs=96.9

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCC--C-C-CHHH---HHHHHhhC---CCcccchhhhhHHHHhcCCCeEEeecCCCCC
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPV--D-N-VPQV---IRQIKEAG---MKVGQVLQDWIEPMADANVDQYTFHVEPVDN  143 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~--d-~-g~~~---i~~i~~~~---~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~  143 (277)
                      .++.+.++...++|++++  ++-.-  + . ....   .+++++.+   ..++ +..+.++...+.|+|.|-+...   +
T Consensus        30 ~~~~~~v~~al~~Gv~~i--qlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~l-iInd~~~lA~~~~adGvHl~~~---d  103 (226)
T d2tpsa_          30 ADPVTVVQKALKGGATLY--QFREKGGDALTGEARIKFAEKAQAACREAGVPF-IVNDDVELALNLKADGIHIGQE---D  103 (226)
T ss_dssp             SCHHHHHHHHHHHTCSEE--EECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCE-EEESCHHHHHHHTCSEEEECTT---S
T ss_pred             cCHHHHHHHHHHCCCCEE--EEcCCCccchhHHHHHHHHHHHHHHHHHhCCeE-EEcCCHHHHhhccCCEEEeccc---c
Confidence            456677888888999999  65321  1 1 1122   23333332   1221 1335567777789997655433   3


Q ss_pred             hH-HHHHHHHHhCCccceeeCCCCCHHhHHHHH-hhcCceEEEEecCCCCCchhh-hhhhhhHHHHHhhCCCccEEEeCC
Q psy11600        144 VP-QVIRQIKEAGMKVGLAIKPKTPVDVIAEYI-ESADLVLIMTVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGG  220 (277)
Q Consensus       144 ~~-~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~-~~~l~kI~~l~~~~~~~~i~vdGg  220 (277)
                      .. ...+  +..+- .-++....+ .+.+.... ..+|++.+=.+-|..+-+..- ....+.++.+.....++-+...||
T Consensus       104 ~~~~~~r--~~~~~-~iig~S~h~-~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGG  179 (226)
T d2tpsa_         104 ANAKEVR--AAIGD-MILGVSAHT-MSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGG  179 (226)
T ss_dssp             SCHHHHH--HHHTT-SEEEEEECS-HHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESS
T ss_pred             chhhhhh--hcccc-eeeeeeccc-hHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecC
Confidence            22 1112  22232 235555554 55554443 458987655543322111111 122344555555456677889999


Q ss_pred             CCcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        221 VGPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       221 V~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                      |+.+++.++.++|+++   .+..|. ++..+.++++++.
T Consensus       180 I~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~  218 (226)
T d2tpsa_         180 ITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREE  218 (226)
T ss_dssp             CCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHH
Confidence            9999999999999986   556665 4677777777653

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=96.15  E-value=0.079  Score=43.58  Aligned_cols=172  Identities=15%  Similarity=0.170  Sum_probs=106.9

Q ss_pred             HHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCC-cc---cc-hhhhhHHH
Q psy11600         52 HPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMK-VG---QV-LQDWIEPM  126 (277)
Q Consensus        52 ~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~-~~---d~-p~~~i~~~  126 (277)
                      .++++.|++. +=+++.-.--..+..+.++.+.+.|...+-+=+.. .+..+.|+++++.... .+   .+ -.+-++..
T Consensus         5 ~~~~~~l~~~-~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~-~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a   82 (212)
T d1vhca_           5 QQIIEKLREL-KIVPVIALDNADDILPLADTLAKNGLSVAEITFRS-EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLA   82 (212)
T ss_dssp             HHHHHHHHHH-CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS-TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHH
T ss_pred             HHHHHHHHHC-CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC-hhHHHHHHHHHhcCCCceEeeeecccHHHHHHH
Confidence            4677788864 33444443333344445788889999988555542 4467778888765432 22   12 56688889


Q ss_pred             HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC-CCHHhHHHHHh-hcCceEEEEecCCC--CCchhhhhhhhh
Q psy11600        127 ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIE-SADLVLIMTVEPGF--GGQKFMQDMMPK  202 (277)
Q Consensus       127 ~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~-~~d~vl~mav~Pgt--~gq~~~~~~l~k  202 (277)
                      .++||+++-=..    ...++++..++.    ++-.-|| .+.+++....+ -+++   +=+-|..  +|       .+.
T Consensus        83 ~~aGa~FivSP~----~~~~v~~~a~~~----~i~~iPGv~TpsEi~~A~~~G~~~---vK~FPA~~~gG-------~~~  144 (212)
T d1vhca_          83 KSSGADFVVTPG----LNPKIVKLCQDL----NFPITPGVNNPMAIEIALEMGISA---VKFFPAEASGG-------VKM  144 (212)
T ss_dssp             HHHTCSEEECSS----CCHHHHHHHHHT----TCCEECEECSHHHHHHHHHTTCCE---EEETTTTTTTH-------HHH
T ss_pred             HhhCCcEEECCC----CCHHHHHHHHhc----CCCccCCcCCHHHHHHHHHCCCCE---EEEccccccch-------HHH
Confidence            999999765322    225777777765    5556666 23444444332 2333   2345532  12       234


Q ss_pred             HHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---CCccccc
Q psy11600        203 VKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---GGQKFMQ  243 (277)
Q Consensus       203 I~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---ggq~F~~  243 (277)
                      ++.++.-+|++.+.--|||+.+|+.+..++|.-.   |++.|.+
T Consensus       145 lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~~~  188 (212)
T d1vhca_         145 IKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEK  188 (212)
T ss_dssp             HHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCH
T ss_pred             HHHHhccccCCeEEecCCCCHHHHHHHHhCCCEEEEEChhhCCH
Confidence            6666777899999999999999999999987543   4444433

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.98  E-value=0.039  Score=45.17  Aligned_cols=161  Identities=13%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             eeccCcHH---hHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC-C-Ccc---cc-hhhhhHHHHhcCCCeEE-eecCC
Q psy11600         71 MMVQNPQQ---WIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-M-KVG---QV-LQDWIEPMADANVDQYT-FHVEP  140 (277)
Q Consensus        71 lmv~~p~~---~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~-~-~~~---d~-p~~~i~~~~~~g~d~it-~H~E~  140 (277)
                      +-..++++   .++.+.+.|++.+-+=+.. ....+.|+++++.. . ..+   .+ -.+-++..+++||+++- -+.  
T Consensus        15 lr~~~~~~a~~~~~al~~~Gi~~iEitlr~-p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP~~--   91 (202)
T d1wa3a1          15 LRANSVEEAKEKALAVFEGGVHLIEITFTV-PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHL--   91 (202)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCCEEEEETTS-TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEECSSC--
T ss_pred             EECCCHHHHHHHHHHHHHcCCCEEEEecCC-ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeCCCC--
Confidence            44444444   5778888999988554432 33555666665432 2 111   12 34568888999999663 222  


Q ss_pred             CCChHHHHHHHHHhCCccceeeCCC-CCHHhHHHHHhh-cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEe
Q psy11600        141 VDNVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIES-ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVD  218 (277)
Q Consensus       141 ~~~~~~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~~-~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vd  218 (277)
                         ..++.+..++.    ++-.-|| .+.+++...++. ++.+   -+-|.   + ..-  .+.++.++..+|++.+.-.
T Consensus        92 ---~~~v~~~~~~~----~i~~iPGv~TpsEi~~A~~~G~~~l---K~fPa---~-~~G--~~~lk~l~~p~p~i~~ipt  155 (202)
T d1wa3a1          92 ---DEEISQFCKEK----GVFYMPGVMTPTELVKAMKLGHTIL---KLFPG---E-VVG--PQFVKAMKGPFPNVKFVPT  155 (202)
T ss_dssp             ---CHHHHHHHHHH----TCEEECEECSHHHHHHHHHTTCCEE---EETTH---H-HHH--HHHHHHHHTTCTTCEEEEB
T ss_pred             ---cHHHHHHHHhc----CCceeCCcCcHHHHHHHHHCCCCEE---Eecch---h-hcC--HHHHHHHhCcccCCcEEee
Confidence               35677777764    4455555 344444444321 2321   12332   1 111  1456667777899999999


Q ss_pred             CCCCcCcHHHHHHccCCC---CCcccccCHHHHHHH
Q psy11600        219 GGVGPNTIDECAKCLTGF---GGQKFMQDMMPKVKW  251 (277)
Q Consensus       219 GgV~~~tv~~~~~~gpg~---ggq~F~~~~~~kI~~  251 (277)
                      |||+.+++.+..++|+-.   |++.+.. ..+.|++
T Consensus       156 GGI~~~n~~~~l~aga~avg~Gs~l~~~-~~~~i~~  190 (202)
T d1wa3a1         156 GGVNLDNVCEWFKAGVLAVGVGSALVKG-TPDEVRE  190 (202)
T ss_dssp             SSCCTTTHHHHHHHTCSCEEECHHHHCS-CHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCeEEEEchhhcCC-CHHHHHH
Confidence            999999999999988764   4455543 3445543

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.13  Score=42.21  Aligned_cols=164  Identities=10%  Similarity=0.119  Sum_probs=100.8

Q ss_pred             CCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhC-CCcc---cc-hhhhhHHHHhcCCCeEEeec
Q psy11600         64 KAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAG-MKVG---QV-LQDWIEPMADANVDQYTFHV  138 (277)
Q Consensus        64 ~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~-~~~~---d~-p~~~i~~~~~~g~d~it~H~  138 (277)
                      =+++...--..+..+.++.+.+.|+..+-+=+.. +...+.|+.+++.. ...+   .+ -.+.++...++||+++-=..
T Consensus        17 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~t-p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~   95 (213)
T d1wbha1          17 VVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT-ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG   95 (213)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS-TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCC-hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC
Confidence            3444444434444456888899999988555532 44677788887764 3222   12 56678899999999765422


Q ss_pred             CCCCChHHHHHHHHHhCCccceeeCCC-CCHHhHHHHHhhcCceEEEEecCCC-CCchhhhhhhhhHHHHHhhCCCccEE
Q psy11600        139 EPVDNVPQVIRQIKEAGMKVGLAIKPK-TPVDVIAEYIESADLVLIMTVEPGF-GGQKFMQDMMPKVKWLRENYPTLNIE  216 (277)
Q Consensus       139 E~~~~~~~~~~~I~~~g~~~g~~i~p~-t~~~~i~~~i~~~d~vl~mav~Pgt-~gq~~~~~~l~kI~~l~~~~~~~~i~  216 (277)
                          ...++++..++.    ++-.-|| .+.+++....+ .+.-. +=+-|.. .|.      .+-++.++..+|++.+.
T Consensus        96 ----~~~~v~~~a~~~----~i~~iPGv~TpsEi~~A~~-~G~~~-vKlFPA~~~Gg------~~~lkal~~p~p~~~~~  159 (213)
T d1wbha1          96 ----LTEPLLKAATEG----TIPLIPGISTVSELMLGMD-YGLKE-FKFFPAEANGG------VKALQAIAGPFSQVRFC  159 (213)
T ss_dssp             ----CCHHHHHHHHHS----SSCEEEEESSHHHHHHHHH-TTCCE-EEETTTTTTTH------HHHHHHHHTTCTTCEEE
T ss_pred             ----CCHHHHHHHHhc----CCCccCCcCCHHHHHHHHH-CCCCE-EEeccchhcCh------HHHHHHhcCcccCCcee
Confidence                235677777765    4445555 23344443322 22211 2234532 110      23456677778999999


Q ss_pred             EeCCCCcCcHHHHHHccCCC---CCcccccC
Q psy11600        217 VDGGVGPNTIDECAKCLTGF---GGQKFMQD  244 (277)
Q Consensus       217 vdGgV~~~tv~~~~~~gpg~---ggq~F~~~  244 (277)
                      --|||+.+++.+..++|..+   |++.|.++
T Consensus       160 ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~~~  190 (213)
T d1wbha1         160 PTGGISPANYRDYLALKSVLCIGGSWLVPAD  190 (213)
T ss_dssp             EBSSCCTTTHHHHHTSTTBSCEEEGGGSCHH
T ss_pred             eeCCCCHHHHHHHHhCCCEEEEEChhhCChh
Confidence            99999999999999988665   45555443

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=95.56  E-value=0.19  Score=41.31  Aligned_cols=165  Identities=13%  Similarity=0.172  Sum_probs=100.0

Q ss_pred             eEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhc
Q psy11600          7 MIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADA   86 (277)
Q Consensus         7 ~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~a   86 (277)
                      .|.|=+-..|..+..+-.+.|.+.|+..+-+=.-    .|   -..+.++.+|+.+|++.+=+.- |.+ .++++...++
T Consensus        18 ~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~----~p---~a~~~i~~l~~~~p~~~vGaGT-V~~-~~~~~~a~~a   88 (216)
T d1mxsa_          18 RILPVITIAREEDILPLADALAAGGIRTLEVTLR----SQ---HGLKAIQVLREQRPELCVGAGT-VLD-RSMFAAVEAA   88 (216)
T ss_dssp             SEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESS----ST---HHHHHHHHHHHHCTTSEEEEEC-CCS-HHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCC----Ch---hHHHHHHHHHHhCCCcceeeee-eec-HHHHHHHHhC
Confidence            5778788888888889999999999998433221    12   2458899999999987655543 234 4568889999


Q ss_pred             CCCeEEEeccCCC-CCHHHHHHHHhhCCCcccchhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         87 NVDQYTFHVEPVD-NVPQVIRQIKEAGMKVGQVLQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        87 g~d~i~~H~e~~d-~g~~~i~~i~~~~~~~~d~p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      |++++     +.. ..++++++.++.                                               ++-.-||
T Consensus        89 Ga~Fi-----vsP~~~~~v~~~a~~~-----------------------------------------------~i~~iPG  116 (216)
T d1mxsa_          89 GAQFV-----VTPGITEDILEAGVDS-----------------------------------------------EIPLLPG  116 (216)
T ss_dssp             TCSSE-----ECSSCCHHHHHHHHHC-----------------------------------------------SSCEECE
T ss_pred             CCCEE-----ECCCCcHHHHHHHHhc-----------------------------------------------CCCccCC
Confidence            99987     122 133333333332                                               2223333


Q ss_pred             -CCHHhHHHHHhhcCceEEEEecCCCCCchhhhh-h---hhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCCC---C
Q psy11600        166 -TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQD-M---MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTGF---G  237 (277)
Q Consensus       166 -t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~-~---l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg~---g  237 (277)
                       .+.+++....           +-|....++.+. .   ..-++.++..+|++.+.--|||+.+++.+..++|.-+   |
T Consensus       117 v~TpsEi~~A~-----------~~G~~~vKlFPA~~~~g~~~ikal~~p~p~~~fiptGGV~~~n~~~yl~~~~v~avgg  185 (216)
T d1mxsa_         117 ISTPSEIMMGY-----------ALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGT  185 (216)
T ss_dssp             ECSHHHHHHHH-----------TTTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEE
T ss_pred             cCCHHHHHHHH-----------HCCCCEEEeccccccccHHHHHHHhcccccCceeccCCCCHHHHHHHHhcCCeEEEEc
Confidence             1112222211           112222222221 1   2346667777899999999999999999988864322   5


Q ss_pred             Cccccc
Q psy11600        238 GQKFMQ  243 (277)
Q Consensus       238 gq~F~~  243 (277)
                      |..|..
T Consensus       186 s~l~~~  191 (216)
T d1mxsa_         186 TWMLDS  191 (216)
T ss_dssp             CTTSCH
T ss_pred             cccCCH
Confidence            566643

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=95.41  E-value=0.27  Score=41.73  Aligned_cols=166  Identities=17%  Similarity=0.248  Sum_probs=105.3

Q ss_pred             HHHHHHhcCCCCeeeeeeeccCcHHh-----HHHHHhcCCCeEEEec---cC-CCC-------------------CHHHH
Q psy11600         54 VVKCLRNKIPKAFFETHMMVQNPQQW-----IEPMADANVDQYTFHV---EP-VDN-------------------VPQVI  105 (277)
Q Consensus        54 ~v~~l~~~~~~~~~d~Hlmv~~p~~~-----i~~l~~ag~d~i~~H~---e~-~d~-------------------g~~~i  105 (277)
                      ..+++|+. -+.-+-.+++..+|...     ++.+. .|+|.+-+=+   |+ .||                   ..+++
T Consensus         6 ~F~~~k~~-~~~ali~yitaG~P~~~~~~~~l~~l~-~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~   83 (271)
T d1ujpa_           6 AFAKARSE-GRAALIPYLTAGFPSREGFLQAVEEVL-PYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELV   83 (271)
T ss_dssp             HHHHHHHT-TBCEEEEEEETTSSCHHHHHHHHHHHG-GGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHc-CCceEEEEEeCcCCCHHHHHHHHHHHH-cCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHH
Confidence            34566654 34567889999987643     44443 4999885543   22 244                   55677


Q ss_pred             HHHHhhCCCcc-cc----------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHH
Q psy11600        106 RQIKEAGMKVG-QV----------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEY  174 (277)
Q Consensus       106 ~~i~~~~~~~~-d~----------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~  174 (277)
                      +.+|+.+..|+ .|          .++|++..+++|+|-+.+.=-|-+....+.+..++.|+..=.=+.|.|+-+.+..+
T Consensus        84 ~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i  163 (271)
T d1ujpa_          84 REVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATV  163 (271)
T ss_dssp             HHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHH
T ss_pred             HHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHH
Confidence            78887776654 33          37899999999999988753221133467778888877766668899999999999


Q ss_pred             Hhhc-CceEEEEecCCCCCc-hhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        175 IESA-DLVLIMTVEPGFGGQ-KFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       175 i~~~-d~vl~mav~Pgt~gq-~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      .+.. +++-.+++..-|+.+ .+-.++.+.++.++++. ++-+.|==||+
T Consensus       164 ~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs  212 (271)
T d1ujpa_         164 VRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVS  212 (271)
T ss_dssp             HTTCCSCEEEECC------------CCHHHHHHHHTTC-CSCEEEESCCC
T ss_pred             HHhCcchhhhhcccCccCccccchHHHHHHHHhhhccc-cCCeEEeCCCC
Confidence            8776 777777877555543 34566777788888653 55566544554

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.40  E-value=0.023  Score=46.18  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             CCCeEEEeccC-CCCCHHHHHHHHhhCCC--cc-----cch---hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh
Q psy11600         87 NVDQYTFHVEP-VDNVPQVIRQIKEAGMK--VG-----QVL---QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA  154 (277)
Q Consensus        87 g~d~i~~H~e~-~d~g~~~i~~i~~~~~~--~~-----d~p---~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~  154 (277)
                      .++++-+|.+. ...|+..|+.+++....  ..     |.|   ..+++.+.++|+|++|+|.-   ...+.++..++.
T Consensus        24 ~v~~iKvG~~l~~~~G~~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~---~g~~~i~~~~~~   99 (206)
T d2czda1          24 YISMIKVNWPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTF---VGRDSVMAVKEL   99 (206)
T ss_dssp             GCSEEEEEHHHHHHHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEST---TCHHHHHHHHTT
T ss_pred             cccEEEECHHHHhhcCHHHHHHHHHhcCCeEEEEeeeeeecccchheehhhccccccEEEeeec---ccHHHHHHhhhc
Confidence            47888777664 34588899999876433  22     344   67899999999999999987   555655555544

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=95.06  E-value=0.47  Score=39.62  Aligned_cols=164  Identities=17%  Similarity=0.171  Sum_probs=92.2

Q ss_pred             HHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeecc-Cc-------------HHhHHHHHhc
Q psy11600         23 ESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ-NP-------------QQWIEPMADA   86 (277)
Q Consensus        23 ~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~-~p-------------~~~i~~l~~a   86 (277)
                      .....++.|+|.+.+  +...|-..|+    ..+++.+++. .+  +-+|.|+. +.             .+.++.+.+.
T Consensus        12 ~a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~-~~--iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~   84 (247)
T d1twda_          12 CALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQR-VT--IPVHPIIRPRGGDFCYSDGEFAAILEDVRTVREL   84 (247)
T ss_dssp             HHHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHH-CC--SCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHh-cC--CCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence            344567789999887  5666777776    3458888875 44  56888987 21             1247778888


Q ss_pred             CCCeEEEeccCCCCCHHHHHHHHhhCCCcccchhhhhHHH-HhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCC
Q psy11600         87 NVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQVLQDWIEPM-ADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPK  165 (277)
Q Consensus        87 g~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d~p~~~i~~~-~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~  165 (277)
                      |+|-+-|=+=..|+                .+..+..+.+ ..++.--+|||--=+ .+.+..+.++             
T Consensus        85 G~dGvV~G~L~~dg----------------~iD~~~~~~L~~~a~~l~vTFHRAfD-~~~d~~~al~-------------  134 (247)
T d1twda_          85 GFPGLVTGVLDVDG----------------NVDMPRMEKIMAAAGPLAVTFHRAFD-MCANPLYTLN-------------  134 (247)
T ss_dssp             TCSEEEECCBCTTS----------------SBCHHHHHHHHHHHTTSEEEECGGGG-GCSCHHHHHH-------------
T ss_pred             CCCeEEEEEECCCC----------------CccHHHHHHHHHHhcccCeeeehhhh-hhCCHHHHHH-------------
Confidence            99988433211122                0112222222 334556788885200 0111222222             


Q ss_pred             CCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHHccCC
Q psy11600        166 TPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKCLTG  235 (277)
Q Consensus       166 t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~~gpg  235 (277)
                             .+++ .++--++|-  |  |..-..+-++.++++.+......|..-|||+..|++++.+.|..
T Consensus       135 -------~Li~-lG~~rILTS--G--g~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~~~g~~  192 (247)
T d1twda_         135 -------NLAE-LGIARVLTS--G--QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVL  192 (247)
T ss_dssp             -------HHHH-HTCCEEEEC--T--TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCS
T ss_pred             -------HHHh-cCCCeEecc--C--CCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCC
Confidence                   1111 233333331  2  11223445666777766656666888999999999999886554

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.0082  Score=48.13  Aligned_cols=71  Identities=17%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             hHHHHHhhCC-CccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHH-HHHHhhCCCCeEEEeCCCCccCHHHh
Q psy11600        202 KVKWLRENYP-TLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKV-KWLRENYPTLNIEVDGGVGPNTIDEC  275 (277)
Q Consensus       202 kI~~l~~~~~-~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI-~~l~~~~~~~~I~VDGGI~~~~~~~~  275 (277)
                      .++.+++..+ ...++|    .++|.+++   .++|++. =-..|.|+.++++ +.+++..+++.||+.||||++|+.++
T Consensus        67 ~~~~~~~~~~~~~~I~V----Ev~~~~e~~~a~~~g~d~i~LDn~~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~  142 (170)
T d1o4ua1          67 AVQEVRKIIPFTTKIEV----EVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLY  142 (170)
T ss_dssp             HHHHHHTTSCTTSCEEE----EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGG
T ss_pred             HHHHHHhhCCCCceEEE----EeCcHHHHHHHHhcCccEEEEcCcChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHH
Confidence            3555555444 233333    24555554   4455553 1123444434333 34566778999999999999999877


Q ss_pred             h
Q psy11600        276 A  276 (277)
Q Consensus       276 ~  276 (277)
                      +
T Consensus       143 a  143 (170)
T d1o4ua1         143 D  143 (170)
T ss_dssp             C
T ss_pred             H
Confidence            5

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.72  E-value=0.063  Score=46.12  Aligned_cols=175  Identities=14%  Similarity=0.147  Sum_probs=97.1

Q ss_pred             HHHHHHHhcCCCCeeeeeeec-cCcHHh---HHHHHhcCCCeEEEeccCCCC----------------CHHHHHHHHhhC
Q psy11600         53 PVVKCLRNKIPKAFFETHMMV-QNPQQW---IEPMADANVDQYTFHVEPVDN----------------VPQVIRQIKEAG  112 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv-~~p~~~---i~~l~~ag~d~i~~H~e~~d~----------------g~~~i~~i~~~~  112 (277)
                      +.++.+++.+++.++-+-.+. .+++++   .+.+.++|+|.+.+++-.-..                -.++++++|+.+
T Consensus        91 ~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~  170 (312)
T d1gtea2          91 QSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV  170 (312)
T ss_dssp             HHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC
T ss_pred             hhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhcc
Confidence            445555666666555555544 345544   555667899999998754221                234567777777


Q ss_pred             CCcccc--------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEE
Q psy11600        113 MKVGQV--------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIM  184 (277)
Q Consensus       113 ~~~~d~--------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~m  184 (277)
                      ..|+-+        +...+....++|++.++++--    ..... .+..-+ +....+....                 .
T Consensus       171 ~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~----~~~~~-~~~~~~-~~~~~~~~~~-----------------~  227 (312)
T d1gtea2         171 QIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNT----VSGLM-GLKADG-TPWPAVGAGK-----------------R  227 (312)
T ss_dssp             SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCC----EEECC-CBCTTS-CBSSCBTTTT-----------------B
T ss_pred             CCceeecccccchhHHHHHHHHHHhcccceEEEee----ccccc-cccccc-cccccccccc-----------------c
Confidence            766643        344456666788887777531    10000 000000 0000000000                 0


Q ss_pred             EecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHccCCC---CCccc-c-cCHHHHHH
Q psy11600        185 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCLTGF---GGQKF-M-QDMMPKVK  250 (277)
Q Consensus       185 av~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F-~-~~~~~kI~  250 (277)
                      ...-|.+|....+..++-++++++..+++.|...||| +...+.+.+.+|++.   ++..+ . +...++|.
T Consensus       228 ~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~  299 (312)
T d1gtea2         228 TTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYC  299 (312)
T ss_dssp             BCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHH
T ss_pred             cccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHH
Confidence            0011334444556667888888888888999999999 556677778899995   33322 2 45555553

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=94.66  E-value=0.33  Score=38.88  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=87.4

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCCC---cccc-----hhhhhHHHHhcCCCeEEeecCCCCChHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGMK---VGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQ  146 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~~---~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~  146 (277)
                      +.++.+.++|+|++-|-+....   -.++..+++.+....   .+-+     ++...+.+.+++.|++-+|-+   ...+
T Consensus        12 ed~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlHg~---e~~~   88 (200)
T d1v5xa_          12 EDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGE---EPPE   88 (200)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSC---CCHH
T ss_pred             HHHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhccccccccccccc---CCHH
Confidence            3577889999999988775321   167777777665432   2211     455667778899999999965   4444


Q ss_pred             HHHHHHHh-CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600        147 VIRQIKEA-GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT  225 (277)
Q Consensus       147 ~~~~I~~~-g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t  225 (277)
                      ..+.+++. ...+-..+......+   ..-..+|.+++-+-.+|++ ..+-......+  +.   ....+.+.||++.++
T Consensus        89 ~~~~l~~~~~iik~~~~~~~~~~~---~~~~~~~~~L~D~~~~g~g-~~~~~~~~~~~--~~---~~~~~~LAGGl~~~N  159 (200)
T d1v5xa_          89 WAEAVGRFYPVIKAFPLEGPARPE---WADYPAQALLLDGKRPGSG-EAYPRAWAKPL--LA---TGRRVILAGGIAPEN  159 (200)
T ss_dssp             HHHHHTTTSCEEEEEECSSSCCGG---GGGSSCSEEEEECSSTTSC-CCCCGGGGHHH--HH---TTSCEEECSSCCSTT
T ss_pred             HHHHHhhccccceeeccCchhhHH---HhhcchhheeecccccCcc-cccchHHHhhh--hh---ccCceEecCCCCHHH
Confidence            44444431 112233333333322   1223467777666556543 34433322111  11   234688999999999


Q ss_pred             HHHHHHccCCC
Q psy11600        226 IDECAKCLTGF  236 (277)
Q Consensus       226 v~~~~~~gpg~  236 (277)
                      +.++.+.+|-.
T Consensus       160 v~~~~~~~p~g  170 (200)
T d1v5xa_         160 LEEVLALRPYA  170 (200)
T ss_dssp             HHHHHHHCCSE
T ss_pred             HHHHHhcCCCE
Confidence            99999888864

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.43  Score=38.23  Aligned_cols=150  Identities=14%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             HHhHHHHHhcCCCeEEEeccCCCC---CHHHHHHHHhhCCC---cc----cchh-hhhHHHHhcCCCeEEeecCCCCChH
Q psy11600         77 QQWIEPMADANVDQYTFHVEPVDN---VPQVIRQIKEAGMK---VG----QVLQ-DWIEPMADANVDQYTFHVEPVDNVP  145 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~~d~---g~~~i~~i~~~~~~---~~----d~p~-~~i~~~~~~g~d~it~H~E~~~~~~  145 (277)
                      .+.++.+.++|+|++-|-+....-   .++..+++.+....   .+    +.+. ...+.+.+.+.+++-+|-+   ...
T Consensus        12 ~~da~~~~~~gad~iGfI~~~~SpR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlhg~---e~~   88 (205)
T d1nsja_          12 LEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHGE---EPI   88 (205)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECSC---CCH
T ss_pred             HHHHHHHHhCCCCEEeEeccCCCCCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccchhccch---hhH
Confidence            445778889999999988753211   66777777655332   11    1134 4445556789999999976   445


Q ss_pred             HHHHHHHHhCCccceeeCCCCCHHhHHHHHhh-cCceEEEEecCC--CCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        146 QVIRQIKEAGMKVGLAIKPKTPVDVIAEYIES-ADLVLIMTVEPG--FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       146 ~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~-~d~vl~mav~Pg--t~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      +..+.+++.. ..-.+..... -..+..+... .+.++.-+..+.  -.|+.|.-..+..+..   .  ...+.+.||++
T Consensus        89 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~---~--~~~~~LAGGl~  161 (205)
T d1nsja_          89 ELCRKIAERI-LVIKAVGVSN-ERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRD---R--FRYLVLSGGLN  161 (205)
T ss_dssp             HHHHHHHTTS-EEEEEEEESS-HHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGG---G--SSCEEEESSCC
T ss_pred             HHHhhcccce-eeeeeccccc-hHHHHHHhhcccceeeeccccccCCCCCcccchhhcccchh---c--ccceeeecCCC
Confidence            5555555421 2222222222 2334444333 455666665553  3466777665554421   1  12467999999


Q ss_pred             cCcHHHHHH-ccCCC
Q psy11600        223 PNTIDECAK-CLTGF  236 (277)
Q Consensus       223 ~~tv~~~~~-~gpg~  236 (277)
                      .+++++..+ .+|..
T Consensus       162 ~~Nv~~ai~~~~p~g  176 (205)
T d1nsja_         162 PENVRSAIDVVRPFA  176 (205)
T ss_dssp             TTTHHHHHHHHCCSE
T ss_pred             HHHHHHHHHHhCCCE
Confidence            999988764 77753

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.55  E-value=0.064  Score=44.42  Aligned_cols=165  Identities=12%  Similarity=0.120  Sum_probs=92.1

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCC------CCCHHHHHHHHh
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPV------DNVPQVIRQIKE  110 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~------d~g~~~i~~i~~  110 (277)
                      +|++||..|.-..+-       +..++  ++      .+|.+.++.+.+.|++++  |+--.      .--..+++.+.+
T Consensus         9 IDl~~g~vV~~~~g~-------~~~~~--~~------~dP~~~a~~~~~~ga~~l--~i~DLd~~~~~~~~~~~i~~i~~   71 (239)
T d1vzwa1           9 VDVRDGQAVRLVHGE-------SGTET--SY------GSPLEAALAWQRSGAEWL--HLVDLDAAFGTGDNRALIAEVAQ   71 (239)
T ss_dssp             EEEETTEEBC---------------CC--BC------CCHHHHHHHHHHTTCSEE--EEEEHHHHHTSCCCHHHHHHHHH
T ss_pred             EEEECCeEEEEECcc-------ccCee--ec------CCHHHHHHHHHHcCCCEE--EEEeecccccccchHHHHHHHHh
Confidence            799999998544331       11111  12      589999999999999999  63211      115678899988


Q ss_pred             hCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCC--------C-----CCHHhHH
Q psy11600        111 AGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKP--------K-----TPVDVIA  172 (277)
Q Consensus       111 ~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p--------~-----t~~~~i~  172 (277)
                      .+..|+.+     -.+.++.+.+.|++.|.+...+.+++.-+.+..+..|.+.-+++..        |     .......
T Consensus        72 ~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~  151 (239)
T d1vzwa1          72 AMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETL  151 (239)
T ss_dssp             HCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHH
T ss_pred             hcCcceEeecccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccceeeecCccceeeccccchhh
Confidence            88778876     5778889999999999997652222223334444444332222111        1     1111222


Q ss_pred             HHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        173 EYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       173 ~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      ..+..  ++-++++.+.-.-..+.+..++++++   .+. .+..+..-|||+
T Consensus       152 ~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i---~~~-~~~pvi~sGGv~  199 (239)
T d1vzwa1         152 DRLNKEGCARYVVTDIAKDGTLQGPNLELLKNV---CAA-TDRPVVASGGVS  199 (239)
T ss_dssp             HHHHHTTCCCEEEEEC-------CCCHHHHHHH---HHT-CSSCEEEESCCC
T ss_pred             hhhhhccccEEEEEeecccceecCCcchhhhhh---hhc-cCceEEEECCCC
Confidence            22222  34477787776443444444444444   332 346788889986

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=94.51  E-value=0.14  Score=42.06  Aligned_cols=127  Identities=16%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             hHHHHhcCCCeEEe-ecCCCCCh---HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCC---CCCchh
Q psy11600        123 IEPMADANVDQYTF-HVEPVDNV---PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPG---FGGQKF  195 (277)
Q Consensus       123 i~~~~~~g~d~it~-H~E~~~~~---~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pg---t~gq~~  195 (277)
                      .+.+.++|++++.+ |.|--...   .+..+..++.|++.  -++.|++.+.........++   ++.+|-   .+|+..
T Consensus        78 ~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~--ivcvge~~~~~~~~~~~~~i---Iayep~waIGtg~~~  152 (226)
T d1w0ma_          78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDV--VVCAPDPRTSLAAAALGPHA---VAVEPPELIGTGRAV  152 (226)
T ss_dssp             HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEE--EEEESSHHHHHHHHHTCCSE---EEECCGGGTTTSCCH
T ss_pred             HhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEE--EEecCchHHhhhhhccccce---eeecchhhccCCCCC
Confidence            35678889999887 65511112   23334444455443  34457666544333333333   566662   234344


Q ss_pred             hh----hhhhhHHHHHhhCCCccEEEeCCCCcCc-HHHHHHccCCC---CCcccc-cCHHHHHHHHHh
Q psy11600        196 MQ----DMMPKVKWLRENYPTLNIEVDGGVGPNT-IDECAKCLTGF---GGQKFM-QDMMPKVKWLRE  254 (277)
Q Consensus       196 ~~----~~l~kI~~l~~~~~~~~i~vdGgV~~~t-v~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~  254 (277)
                      -+    .+...++.+++..+++.+...|||+..+ +..+.+.|.+.   ||..+. ++...+++++.+
T Consensus       153 ~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~~~i~~l~~  220 (226)
T d1w0ma_         153 SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAK  220 (226)
T ss_dssp             HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHH
T ss_pred             ChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCCCHHHHHHHHHH
Confidence            33    3334455556677889999999999855 45567777774   777776 577777777654

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.32  E-value=0.052  Score=43.10  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=46.3

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHHHH---ccCCC-CCcccccC-HHHHHHHHHhhCCCCeEEEeCCCCccCHHHh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDECAK---CLTGF-GGQKFMQD-MMPKVKWLRENYPTLNIEVDGGVGPNTIDEC  275 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~---~gpg~-ggq~F~~~-~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~  275 (277)
                      +.++.+++..+...++|    .++|.+++.+   +|++. ==..|.++ .-+-++.++.+.+.+.+|+-||||.+|+..+
T Consensus        68 ~~i~~~k~~~~~~~I~V----Ev~s~~q~~~a~~~~~diImLDN~sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~y  143 (169)
T d1qpoa1          68 DALRAVRNAAPDLPCEV----EVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY  143 (169)
T ss_dssp             HHHHHHHHHCTTSCEEE----EESSHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHH
T ss_pred             hhhhhhhhhcCCCceEE----EeccHHHhhhhhhcCCcEEEecCcChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHH
Confidence            44566666677666664    3577766544   45553 11334432 3344455566778899999999999999887


Q ss_pred             h
Q psy11600        276 A  276 (277)
Q Consensus       276 ~  276 (277)
                      +
T Consensus       144 a  144 (169)
T d1qpoa1         144 A  144 (169)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.26  E-value=0.099  Score=42.44  Aligned_cols=90  Identities=12%  Similarity=0.110  Sum_probs=62.1

Q ss_pred             eeeccccCcccHHHHHHHHHHcCCCEEEEecccc-ccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHh----HHHH
Q psy11600          9 GPSILNSDLSNLHSESQNLLDSGADYLHLDVMDG-TFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQW----IEPM   83 (277)
Q Consensus         9 ~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg-~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~----i~~l   83 (277)
                      .| |++.|..+-.+-++++-  .++++=  |  | .+   +..|++.+++|++.  ++++-.+++..|-.+.    +..+
T Consensus         2 ~~-ilaLD~~~~~~~~~~~~--~~~~vK--v--G~~l---~~~G~~~i~~l~~~--~~~IflDlK~~DIpnTv~~~v~~~   69 (198)
T d1vqta1           2 TP-VLSLDMEDPIRFIDENG--SFEVVK--V--GHNL---AIHGKKIFDELAKR--NLKIILDLKFCDIPSTVERSIKSW   69 (198)
T ss_dssp             EE-EEECCSSSHHHHHHHHC--CCSEEE--E--CHHH---HTTCTHHHHHHHTT--TCEEEEEEEECSCHHHHHHHHHHH
T ss_pred             Cc-EEEcCchhHHHHHHHcC--CCCEEE--E--CHHH---HhccHHHHHHHHHC--CCcEEEEehhcCccHHHHHHHHHH
Confidence            45 78999987555554431  244422  2  3 33   34699999999974  7888889999995554    5556


Q ss_pred             HhcCCCeEEEeccCCCCCHHHHHHHHhhCC
Q psy11600         84 ADANVDQYTFHVEPVDNVPQVIRQIKEAGM  113 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~  113 (277)
                      .+.|+|++|+|.   -+|.+.+++..+...
T Consensus        70 ~~~g~d~itvH~---~~G~~~l~~a~~~~~   96 (198)
T d1vqta1          70 DHPAIIGFTVHS---CAGYESVERALSATD   96 (198)
T ss_dssp             CCTTEEEEEEEG---GGCHHHHHHHHHHCS
T ss_pred             hhccccEEEEEc---cCchhhhhHhhhhcc
Confidence            677999999996   346677877766654

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.083  Score=42.69  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=90.8

Q ss_pred             HhHHHHHhcCCCeEEEeccCCC---CCHHHHHHHHhhCC-Ccccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHH
Q psy11600         78 QWIEPMADANVDQYTFHVEPVD---NVPQVIRQIKEAGM-KVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVI  148 (277)
Q Consensus        78 ~~i~~l~~ag~d~i~~H~e~~d---~g~~~i~~i~~~~~-~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~  148 (277)
                      +.++.+.++|+|++-|-+....   -.++..+.+.+... ..+-+     |+...+.+...+.|++-+|-.   ......
T Consensus        12 ~d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~~~~V~Vfv~~~~~~i~~~~~~~~~d~iQlHG~---e~~~~~   88 (198)
T d1piia1          12 QDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGN---EEQLYI   88 (198)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHHHHHHHTCSEEEECSC---CCHHHH
T ss_pred             HHHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcccccceeeeccchhhHHHhhhcccccceeecCC---ccHHHH
Confidence            4567788899999998764321   16777777766543 22211     666667778889999999976   555666


Q ss_pred             HHHHHhCC---ccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCc
Q psy11600        149 RQIKEAGM---KVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT  225 (277)
Q Consensus       149 ~~I~~~g~---~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~t  225 (277)
                      +.++....   .............  ......+|..++=+ .+|-.|+.|.-.++.+.       ....+.+.||++.++
T Consensus        89 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~lld~-~~gGtG~~fdw~~~~~~-------~~~~~~LAGGl~~~N  158 (198)
T d1piia1          89 DTLREALPAHVAIWKALSVGETLP--AREFQHVDKYVLDN-GQGGSGQRFDWSLLNGQ-------SLGNVLLAGGLGADN  158 (198)
T ss_dssp             HHHHHHSCTTSEEEEEEECSSSCC--CCCCTTCCEEEEES-CSCCSSCCCCGGGGTTS-------CCTTEEEESSCCTTT
T ss_pred             HHHhccccccccceeccchhhhhh--HHHhhhhcccccCC-cccccceeeehhhhccc-------ccceeEEecCCCHHH
Confidence            66766421   1222222322211  11223456554433 45666788876655432       223578999999999


Q ss_pred             HHHHHHccCCC
Q psy11600        226 IDECAKCLTGF  236 (277)
Q Consensus       226 v~~~~~~gpg~  236 (277)
                      +.+..+.+|..
T Consensus       159 v~~a~~~~p~g  169 (198)
T d1piia1         159 CVEAAQTGCAG  169 (198)
T ss_dssp             HHHHHTTCCSE
T ss_pred             HHHHHhcCCCE
Confidence            99998888853

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.01  E-value=0.084  Score=41.84  Aligned_cols=85  Identities=16%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             ChHHHHHHHHHhCCccceeeCCCCCHHhHHHHH-hhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        143 NVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYI-ESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       143 ~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i-~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                      +....++.+++......+.+.+.+ ++.....+ ..+|++++=-..|        +++-+.++.++...+.+.+++.|||
T Consensus        65 ~i~~~i~~~k~~~~~~~I~VEv~s-~~q~~~a~~~~~diImLDN~sp--------~~~k~~v~~~~~~~~~i~lEaSGgI  135 (169)
T d1qpoa1          65 SVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAV--------WQTQTAVQRRDSRAPTVMLESSGGL  135 (169)
T ss_dssp             SHHHHHHHHHHHCTTSCEEEEESS-HHHHHHHGGGCCSEEEEETCCH--------HHHHHHHHHHHHHCTTCEEEEESSC
T ss_pred             chhhhhhhhhhhcCCCceEEEecc-HHHhhhhhhcCCcEEEecCcCh--------HhHHHHHHHhhccCCeeEEEEeCCC
Confidence            344455555555433445554443 33333333 3567776544444        2333445566777899999999999


Q ss_pred             CcCcHHHHHHccCCC
Q psy11600        222 GPNTIDECAKCLTGF  236 (277)
Q Consensus       222 ~~~tv~~~~~~gpg~  236 (277)
                      +..|+.++.+.|+|+
T Consensus       136 ~~~ni~~ya~~GvD~  150 (169)
T d1qpoa1         136 SLQTAATYAETGVDY  150 (169)
T ss_dssp             CTTTHHHHHHTTCSE
T ss_pred             CHHHHHHHHHcCCCE
Confidence            999999999999997

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.84  E-value=0.43  Score=37.75  Aligned_cols=157  Identities=11%  Similarity=0.045  Sum_probs=92.1

Q ss_pred             HHHHHhcCCCeEEEeccCCCCCHHHHHHHHhhCCCccc---------c------hhhhhHHHHhcCCCeEEeecCCC---
Q psy11600         80 IEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGQ---------V------LQDWIEPMADANVDQYTFHVEPV---  141 (277)
Q Consensus        80 i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~~~~~~d---------~------p~~~i~~~~~~g~d~it~H~E~~---  141 (277)
                      .+....+|+..+  +.    .+++.++++|+....+.-         .      ...+.+...++|+|.+.+.....   
T Consensus        29 A~aa~~~Ga~~i--~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~~~~~  102 (222)
T d1y0ea_          29 ALAAYEGGAVGI--RA----NTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRP  102 (222)
T ss_dssp             HHHHHHHTCSEE--EE----ESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCS
T ss_pred             HHHHHHCCCeEE--ec----CCHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCCCEEEeeccccccc
Confidence            445555688888  33    245678888887644321         0      35566778889999998864211   


Q ss_pred             -CChHHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCC--CchhhhhhhhhHHHHHhhCCCccEEEe
Q psy11600        142 -DNVPQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFG--GQKFMQDMMPKVKWLRENYPTLNIEVD  218 (277)
Q Consensus       142 -~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~--gq~~~~~~l~kI~~l~~~~~~~~i~vd  218 (277)
                       .......+.+++.+...-+...+.+.-+.....-..+|.+......-++.  +.......++.+.++++. .++-+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~iPVia~  181 (222)
T d1y0ea_         103 KETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS-VDAKVIAE  181 (222)
T ss_dssp             SSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-CCSEEEEE
T ss_pred             cchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhc-CCCcEEEe
Confidence             14556777788777665555566665443333333355542111111111  111222334455555443 34668899


Q ss_pred             CCC-CcCcHHHHHHccCCC---CCccccc
Q psy11600        219 GGV-GPNTIDECAKCLTGF---GGQKFMQ  243 (277)
Q Consensus       219 GgV-~~~tv~~~~~~gpg~---ggq~F~~  243 (277)
                      ||| +.+.+..++++|++.   |+...+|
T Consensus       182 GGI~t~~d~~~~~~~GAdgV~iGsAi~rp  210 (222)
T d1y0ea_         182 GNVITPDMYKRVMDLGVHCSVVGGAITRP  210 (222)
T ss_dssp             SSCCSHHHHHHHHHTTCSEEEECHHHHCH
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEchhhcCH
Confidence            999 678999999999996   7755544

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=93.83  E-value=0.72  Score=38.42  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=31.6

Q ss_pred             CCcccccCHHHHHHHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        237 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       237 ggq~F~~~~~~kI~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      ||..--.+-++.+++|.+......|.+=||||.+|+++++
T Consensus       148 Gg~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~  187 (247)
T d1twda_         148 GQKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFL  187 (247)
T ss_dssp             TTSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHH
Confidence            4455456778888888876666779999999999998875

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.50  E-value=0.062  Score=44.63  Aligned_cols=164  Identities=12%  Similarity=0.198  Sum_probs=94.5

Q ss_pred             EeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCC----C---CHHHHHHHH
Q psy11600         37 LDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVD----N---VPQVIRQIK  109 (277)
Q Consensus        37 ~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d----~---g~~~i~~i~  109 (277)
                      +|++||.-|-           +.+   .-....|....+|.+.++.+.+.|++++  |+-=.|    +   -..+++.++
T Consensus         7 iDl~~GkvVr-----------l~~---G~~~~~~~y~~dP~~~a~~~~~~g~~~l--~ivDLda~~~~~~~~~~~~~~~~   70 (241)
T d1qo2a_           7 IDLFRGKVAR-----------MIK---GRKENTIFYEKDPVELVEKLIEEGFTLI--HVVDLSNAIENSGENLPVLEKLS   70 (241)
T ss_dssp             EEEETTEEEE-----------EGG---GCGGGEEEESSCHHHHHHHHHHTTCCCE--EEEEHHHHHHCCCTTHHHHHHGG
T ss_pred             EEEECCEEEE-----------EeC---cccCCceEECCCHHHHHHHHHHCCCCEE--EEEecccccccCCcchhheehhc
Confidence            7999997662           111   1122456678999999999999999999  632111    1   334555555


Q ss_pred             hhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceee--------------CCCCCHHh
Q psy11600        110 EAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAI--------------KPKTPVDV  170 (277)
Q Consensus       110 ~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i--------------~p~t~~~~  170 (277)
                      +.. .|+.+     -.+-++.+.+.|++.|.+.....+++ ...+.+.+.+-+.-+++              +.+..+..
T Consensus        71 ~~~-~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~-~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~~~~~~  148 (241)
T d1qo2a_          71 EFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP-SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVS  148 (241)
T ss_dssp             GGG-GGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCT-THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHH
T ss_pred             ccc-cchhhhhhhhhhhhhhhccccccceEecCcccccCc-hhhhhhcccccceeeecccccccccccCcccceeeehhH
Confidence            444 36555     46678889999999999965411111 23344444332322332              12234444


Q ss_pred             HHHHHhh--cCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCC
Q psy11600        171 IAEYIES--ADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG  222 (277)
Q Consensus       171 i~~~i~~--~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~  222 (277)
                      +.+.+..  ++-++++.+.-.-..+.+..++++++...    .++.+.+-||+.
T Consensus       149 ~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~----~~~pvi~~GGv~  198 (241)
T d1qo2a_         149 LLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIE----AEVKVLAAGGIS  198 (241)
T ss_dssp             HHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHH----HTCEEEEESSCC
T ss_pred             HHHHhhccccceEEEeehhhhhhccccchhhhhhhhcc----CCceEEEECCCC
Confidence            4444443  45567777765433334455555555332    346788899996

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.98  E-value=1.6  Score=34.40  Aligned_cols=169  Identities=11%  Similarity=0.028  Sum_probs=92.9

Q ss_pred             cccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeee---------eccCcHHhHHHH
Q psy11600         13 LNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHM---------MVQNPQQWIEPM   83 (277)
Q Consensus        13 ~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hl---------mv~~p~~~i~~l   83 (277)
                      ...|...+.+..+..++.|+..+.+.            ++..++.+|+. ++.+...=.         ......+.....
T Consensus        28 ~~~~~~~v~~~A~a~~~~Ga~~i~~~------------~~~~~~~ir~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (230)
T d1yxya1          28 YSETGGIMPLMAKAAQEAGAVGIRAN------------SVRDIKEIQAI-TDLPIIGIIKKDYPPQEPFITATMTEVDQL   94 (230)
T ss_dssp             CCTTCCSHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHTT-CCSCEEEECBCCCTTSCCCBSCSHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHCCCeEEEec------------ChhhHHHHHhh-hhcchhhhhcccCCcceeeechhHHHHHHH
Confidence            34466666677777888899996552            24567788875 665543211         122234567778


Q ss_pred             HhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcc---cc-hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHh
Q psy11600         84 ADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVG---QV-LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA  154 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~---d~-p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~  154 (277)
                      ..+|+|.+.++......     ..+.++.++.......   .+ -.+..+...++|+|++..+.-   ...         
T Consensus        95 ~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~---~~~---------  162 (230)
T d1yxya1          95 AALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLS---GYT---------  162 (230)
T ss_dssp             HTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTT---TSS---------
T ss_pred             HhcCCCEEEEecccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecc---ccc---------
Confidence            88999998666543221     3455555555432211   11 233445555666666655321   000         


Q ss_pred             CCccceeeCCCCCHHhHHHHHhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC-CcCcHHHHHHcc
Q psy11600        155 GMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKCL  233 (277)
Q Consensus       155 g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV-~~~tv~~~~~~g  233 (277)
                          +.                          ..+.+     .. ...+..+.. ..++-+..+||| +.+.+..+.++|
T Consensus       163 ----~~--------------------------~~~~~-----~~-~~~~~~~~~-~~~ipvia~GGI~t~~d~~~al~~G  205 (230)
T d1yxya1         163 ----PY--------------------------SRQEA-----GP-DVALIEALC-KAGIAVIAEGKIHSPEEAKKINDLG  205 (230)
T ss_dssp             ----TT--------------------------SCCSS-----SC-CHHHHHHHH-HTTCCEEEESCCCSHHHHHHHHTTC
T ss_pred             ----cc--------------------------ccccc-----hH-HHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHcC
Confidence                00                          00000     00 111222222 235778899999 577888888899


Q ss_pred             CCC---CCccccc
Q psy11600        234 TGF---GGQKFMQ  243 (277)
Q Consensus       234 pg~---ggq~F~~  243 (277)
                      ++.   |+...+|
T Consensus       206 Ad~V~vGsAi~~p  218 (230)
T d1yxya1         206 VAGIVVGGAITRP  218 (230)
T ss_dssp             CSEEEECHHHHCH
T ss_pred             CCEEEEChhhcCH
Confidence            996   7766654

>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.10  E-value=0.36  Score=42.06  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCCCC------------HHHHHHHHhc---CC-CCeeeeeeeccCcHHhHHHH
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFG------------HPVVKCLRNK---IP-KAFFETHMMVQNPQQWIEPM   83 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g------------~~~v~~l~~~---~~-~~~~d~Hlmv~~p~~~i~~l   83 (277)
                      +.++++.|.++|++|+++|=      |.++++            -..++.++..   .+ +..+..|.--.|....++.+
T Consensus       192 y~~el~~L~~aG~~~IQiDE------P~l~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~v~~~~~~g~~~~~~~~l  265 (365)
T d1u1ha2         192 IKDEVEDLEKGGIGVIQIDE------AALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSI  265 (365)
T ss_dssp             HHHHHHHHHHHTCCEEEEEC------TTTTTTCCSSGGGHHHHHHHHHHHHHHHHTTSCTTSEEEEEESCSCCTTTHHHH
T ss_pred             HHHHHHHHHhcCCcEEEeCc------hHHhhhhccccccHHHHHHHHHHHHHHHHhcccccceEEEEecccccchhHHHH
Confidence            46788999999999999992      222221            0123333322   22 45677788878888889999


Q ss_pred             HhcCCCeEEEeccCC
Q psy11600         84 ADANVDQYTFHVEPV   98 (277)
Q Consensus        84 ~~ag~d~i~~H~e~~   98 (277)
                      .+..++.+  |+|..
T Consensus       266 ~~l~vd~l--~le~~  278 (365)
T d1u1ha2         266 IDMDADVI--TIENS  278 (365)
T ss_dssp             HTTCCSEE--EECCS
T ss_pred             hcCCcccc--hhhhc
Confidence            99999988  66643

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=90.88  E-value=1.5  Score=36.14  Aligned_cols=142  Identities=14%  Similarity=0.165  Sum_probs=82.7

Q ss_pred             CceEeeeccccCcccHHHHHHHHHHcCCCEEEE--eccccccccCCCCCHHHHHHHHhcCCCCeeeeeeecc--------
Q psy11600          5 QCMIGPSILNSDLSNLHSESQNLLDSGADYLHL--DVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQ--------   74 (277)
Q Consensus         5 ~~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~--DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~--------   74 (277)
                      +.+|..||...+...+.++++++...|+|.+=+  |-....  ++..-=.+.++.+|+...++|+-+++-..        
T Consensus        15 ~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~--~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~   92 (252)
T d1gqna_          15 MPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDI--ASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTI   92 (252)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCT--TCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEcccccc--CCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence            457899999999999988999988888887543  433321  11111135677788776788998877664        


Q ss_pred             CcHHhHH---HHHhcC-CCeEEEeccCCCC---CHHHHHHHHhhCCC----cccc---h-----hhhhHHHHhcCCCeEE
Q psy11600         75 NPQQWIE---PMADAN-VDQYTFHVEPVDN---VPQVIRQIKEAGMK----VGQV---L-----QDWIEPMADANVDQYT  135 (277)
Q Consensus        75 ~p~~~i~---~l~~ag-~d~i~~H~e~~d~---g~~~i~~i~~~~~~----~~d~---p-----~~~i~~~~~~g~d~it  135 (277)
                      +.+++++   .+.++| +|++  .+|..-.   -.++++..++.+..    .|+.   |     ..+++.+.+.|||.+=
T Consensus        93 ~~~~~~~ll~~~~~~~~~d~i--DiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDivK  170 (252)
T d1gqna_          93 TTQHYLTLNRAAIDSGLVDMI--DLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPK  170 (252)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEE--EEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCceE--eccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            3445554   445567 8999  5553221   22344444444332    2332   3     3456666777888654


Q ss_pred             eecCCCCChHHHHHHH
Q psy11600        136 FHVEPVDNVPQVIRQI  151 (277)
Q Consensus       136 ~H~E~~~~~~~~~~~I  151 (277)
                      +=.-|. +..+..+.+
T Consensus       171 ia~~a~-~~~D~~~ll  185 (252)
T d1gqna_         171 IAVMPQ-SKHDVLTLL  185 (252)
T ss_dssp             EEECCS-SHHHHHHHH
T ss_pred             EEecCC-CHHHHHHHH
Confidence            433211 345554444

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.86  E-value=0.15  Score=40.38  Aligned_cols=84  Identities=12%  Similarity=0.319  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHhC-CccceeeCCCCCHHhHHHHHh-hcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCC
Q psy11600        144 VPQVIRQIKEAG-MKVGLAIKPKTPVDVIAEYIE-SADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV  221 (277)
Q Consensus       144 ~~~~~~~I~~~g-~~~g~~i~p~t~~~~i~~~i~-~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV  221 (277)
                      ....++.+++.. ..+.+.+.+.+ ++.....+. .+|.+++=-..|        +++-+-++.++...+++.+++.|||
T Consensus        64 ~~~~~~~~~~~~~~~~~I~VEv~~-~~e~~~a~~~g~d~i~LDn~~p--------e~~k~~~~~lk~~~~~i~lEaSGGI  134 (170)
T d1o4ua1          64 AERAVQEVRKIIPFTTKIEVEVEN-LEDALRAVEAGADIVMLDNLSP--------EEVKDISRRIKDINPNVIVEVSGGI  134 (170)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEEESS-HHHHHHHHHTTCSEEEEESCCH--------HHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             HHHHHHHHHhhCCCCceEEEEeCc-HHHHHHHHhcCccEEEEcCcCh--------hhHhHHHHHHHhhCCcEEEEEECCC
Confidence            344444444321 12334444443 344444443 367665443333        1222234456667899999999999


Q ss_pred             CcCcHHHHHHccCCC
Q psy11600        222 GPNTIDECAKCLTGF  236 (277)
Q Consensus       222 ~~~tv~~~~~~gpg~  236 (277)
                      |++|+.++.+.|+|+
T Consensus       135 ~~~ni~~~a~~GVD~  149 (170)
T d1o4ua1         135 TEENVSLYDFETVDV  149 (170)
T ss_dssp             CTTTGGGGCCTTCCE
T ss_pred             CHHHHHHHHHcCCCE
Confidence            999999999999997

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=1.6  Score=36.03  Aligned_cols=104  Identities=11%  Similarity=0.085  Sum_probs=69.1

Q ss_pred             cCcHHhHHHHHhcCCCeEEEeccCCC--CCHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEeecCCCCChHHH
Q psy11600         74 QNPQQWIEPMADANVDQYTFHVEPVD--NVPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTFHVEPVDNVPQV  147 (277)
Q Consensus        74 ~~p~~~i~~l~~ag~d~i~~H~e~~d--~g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~H~E~~~~~~~~  147 (277)
                      =+|.+....+.++|||.||+|.-.--  --..-+..+++....++..    -..+++...+..++++|+=+|   ...++
T Consensus        24 Pd~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~lNlE~a~~~e~i~ia~~~kP~qvtLVPe---~r~el  100 (242)
T d1m5wa_          24 PDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPE---KRQEV  100 (242)
T ss_dssp             SCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHHHHHCCSEEEECCC---CSSCS
T ss_pred             CCHHHHHHHHHHcCCCeEEeCCCCCccccchHHHHHHHHHhhcccccccccchhHHHHHHHhccceEEEeec---Ccccc
Confidence            37888899999999999999976421  1456688888887765543    366888888999999999888   43211


Q ss_pred             HHHHHHhCCccceeeCCCCCHH---hHHHHHhhcCceEEEEecCC
Q psy11600        148 IRQIKEAGMKVGLAIKPKTPVD---VIAEYIESADLVLIMTVEPG  189 (277)
Q Consensus       148 ~~~I~~~g~~~g~~i~p~t~~~---~i~~~i~~~d~vl~mav~Pg  189 (277)
                               .-.-|++....-+   .+.+.++..+..+-+-++|.
T Consensus       101 ---------TTegGld~~~~~~~L~~~i~~l~~~girvSLFiDpd  136 (242)
T d1m5wa_         101 ---------TTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD  136 (242)
T ss_dssp             ---------SCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ---------CcCCceeehhhHHHHHHHHHHHHhcCCeEEEEeccc
Confidence                     1122333322222   33344556677777777775

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=90.30  E-value=0.56  Score=40.62  Aligned_cols=69  Identities=13%  Similarity=0.170  Sum_probs=48.6

Q ss_pred             eeeccCcHHhHHHHHhcCCCeEEE-eccCCCC-------CHHHHHHHHhhCCCcccc------h----------hhhhHH
Q psy11600         70 HMMVQNPQQWIEPMADANVDQYTF-HVEPVDN-------VPQVIRQIKEAGMKVGQV------L----------QDWIEP  125 (277)
Q Consensus        70 Hlmv~~p~~~i~~l~~ag~d~i~~-H~e~~d~-------g~~~i~~i~~~~~~~~d~------p----------~~~i~~  125 (277)
                      |-.+.||.+.++.+.+.|||++|+ ++++...       -.++|+.+.+.+..|+.+      -          .+++..
T Consensus        44 ~r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~  123 (323)
T d1jvna1          44 VRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASL  123 (323)
T ss_dssp             ---CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHH
Confidence            346789999999999999999943 1333221       256677777777778765      1          346788


Q ss_pred             HHhcCCCeEEeec
Q psy11600        126 MADANVDQYTFHV  138 (277)
Q Consensus       126 ~~~~g~d~it~H~  138 (277)
                      +.++|||.|.+..
T Consensus       124 ll~~GadKVvI~T  136 (323)
T d1jvna1         124 YFRSGADKVSIGT  136 (323)
T ss_dssp             HHHHTCSEEEECH
T ss_pred             HHHcCCCeEEech
Confidence            9999999999975

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=89.29  E-value=1  Score=38.23  Aligned_cols=126  Identities=14%  Similarity=0.150  Sum_probs=95.2

Q ss_pred             ccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeee-----------------eeecc
Q psy11600         12 ILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFET-----------------HMMVQ   74 (277)
Q Consensus        12 ~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~-----------------Hlmv~   74 (277)
                      .+..|-..--+.+++..+.|.+++.+|--.-+|-.|+..--++++..++.  ++.+++                 +-+..
T Consensus        77 ~lHlDH~~~~e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~--gv~VE~ElG~v~g~ed~~~~~~~~~~~T  154 (284)
T d1gvfa_          77 ALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQ--DCSVEAELGRLGGVEDDMSVDAESAFLT  154 (284)
T ss_dssp             EEEEEEECCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHT--TCEEEEEESCCC-----------CCSSC
T ss_pred             EeeeccccchHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhh--ccceeeeeeeeccccccccccccccccC
Confidence            35566666677888888999999998887777777877777777777653  333322                 23457


Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCCCC--------CHHHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecC
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPVDN--------VPQVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVE  139 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~d~--------g~~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E  139 (277)
                      +|++..+.+.+.|+|++.+=+-..-|        -.+.++.+++....|+-+      |++.+...+++|+.-|-+..|
T Consensus       155 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~  233 (284)
T d1gvfa_         155 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATE  233 (284)
T ss_dssp             CHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEECHH
T ss_pred             CHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHHcCeEEEEechH
Confidence            89988888889999999766554333        668899999998876533      999999999999988888654

>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.96  E-value=1.7  Score=38.33  Aligned_cols=74  Identities=12%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeccccccccCCCCCHH-------HHHHHHhcCCCCeeeeeeeccCc-HHhHHHHHhc-CCCe
Q psy11600         20 LHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHP-------VVKCLRNKIPKAFFETHMMVQNP-QQWIEPMADA-NVDQ   90 (277)
Q Consensus        20 l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~-------~v~~l~~~~~~~~~d~Hlmv~~p-~~~i~~l~~a-g~d~   90 (277)
                      +.++++.|.++|+.|+++|  |-.++-.  ....       .++.|.+..++.++.+|....+. .+..+.+... ++|.
T Consensus       187 Y~~~l~~L~~aG~~~VQiD--EP~L~~d--l~~~~~~~~~~ay~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~~~~Vd~  262 (394)
T d1u1ha1         187 YKEVITELKAAGATWIQLD--EPVLVMD--LEGQKLQAFTGAYAELESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTA  262 (394)
T ss_dssp             HHHHHHHHHHHTCCEEEEE--CGGGGSC--CCHHHHHHHHHHHHHHTTTTTTSEEEEECCSSCCCHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHhccCCEEEee--ccchhcc--CCHHHHHHHHHHHHHHHhhcCCCCceEEeccCCCchhhHHHHhhcCCCCe
Confidence            3588888999999999998  3333322  2233       34455555567888888888776 4556666554 6898


Q ss_pred             EEEeccCCC
Q psy11600         91 YTFHVEPVD   99 (277)
Q Consensus        91 i~~H~e~~d   99 (277)
                      +  |+|...
T Consensus       263 l--~lD~~~  269 (394)
T d1u1ha1         263 F--GFDLVR  269 (394)
T ss_dssp             E--EEETTT
T ss_pred             e--EEEeec
Confidence            8  666554

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=88.28  E-value=4.4  Score=33.50  Aligned_cols=169  Identities=11%  Similarity=0.064  Sum_probs=94.8

Q ss_pred             CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEeecCCCC-ChHH
Q psy11600         75 NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTFHVEPVD-NVPQ  146 (277)
Q Consensus        75 ~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~H~E~~~-~~~~  146 (277)
                      +|.+..+.+.++||..+++.-|..  .|....++.+|+.+..|+..     -...|.+-..+|||.|.+.+.-.. ....
T Consensus        66 dp~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~~l~~  145 (254)
T d1vc4a_          66 DPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGA  145 (254)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGGGHHH
T ss_pred             CHHHHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHcCCCcccCCccccHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            667789999999999999998864  56899999999999888754     355677788999999988763000 1223


Q ss_pred             HHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecC---CCCCchhhhhhhhhHHHHHh-hCCCccEEEeCCCC
Q psy11600        147 VIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEP---GFGGQKFMQDMMPKVKWLRE-NYPTLNIEVDGGVG  222 (277)
Q Consensus       147 ~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~P---gt~gq~~~~~~l~kI~~l~~-~~~~~~i~vdGgV~  222 (277)
                      +++..+..|+.+=+-+.   .-+++...++ .+.. ++.||-   .|-  ........++..+.+ ...++-+.--+|+.
T Consensus       146 l~~~A~~lgl~~LVEvh---~~~El~~a~~-~~a~-iIGINnRdL~t~--~vd~~~~~~l~~~i~~~~~~~i~IsESGI~  218 (254)
T d1vc4a_         146 YLEEARRLGLEALVEVH---TERELEIALE-AGAE-VLGINNRDLATL--HINLETAPRLGRLARKRGFGGVLVAESGYS  218 (254)
T ss_dssp             HHHHHHHHTCEEEEEEC---SHHHHHHHHH-HTCS-EEEEESBCTTTC--CBCTTHHHHHHHHHHHTTCCSEEEEESCCC
T ss_pred             HHHHHHHhCCceEEEec---cHHHHhhhhc-CCCC-EEEEeccchhhh--hcchHHHHHhhhcccccCCCCEEEEccCCC
Confidence            44444555544322221   1233443333 2332 234442   111  111112223333322 23345556677873


Q ss_pred             cCcHHHHHHccCCC-----CCcccc-cCHHHHHHHH
Q psy11600        223 PNTIDECAKCLTGF-----GGQKFM-QDMMPKVKWL  252 (277)
Q Consensus       223 ~~tv~~~~~~gpg~-----ggq~F~-~~~~~kI~~l  252 (277)
                        |.+.+.....|+     |...+. ++.-+.+++|
T Consensus       219 --~~~dv~~l~~g~davLIGesLm~~~d~~~~l~~L  252 (254)
T d1vc4a_         219 --RKEELKALEGLFDAVLIGTSLMRAPDLEAALREL  252 (254)
T ss_dssp             --SHHHHHTTTTTCSEEEECHHHHTSSCHHHHHHHH
T ss_pred             --CHHHHHHHHcCCCEEEEChhhcCCCCHHHHHHHh
Confidence              444444444444     444444 4666666654

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.01  E-value=0.69  Score=39.26  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeec-----cCcH---
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMV-----QNPQ---   77 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv-----~~p~---   77 (277)
                      .+.+|.| +.|...+.+..+.+.+.|.+.+++|++-        .|...++.||+ ++++++.+|---     .+|.   
T Consensus        88 ~lya~Ni-T~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~a~~~l~~-~~~lpi~~H~a~~g~~~r~~~~Gi  157 (283)
T d1ykwa1          88 KIYLANI-TDEVDSLMEKHDVAVRNGANALLINALP--------VGLSAVRMLSN-YTQVPLIGHFPFIASFSRMEKYGI  157 (283)
T ss_dssp             CEEEEEC-CCCGGGHHHHHHHHHHHTCCEEEEEHHH--------HCHHHHHHHHH-HCSSCEEEECTTTHHHHCSTTSEE
T ss_pred             eEEeeec-CCCHHHHHHHHHHHHHhCCCEEEEeccc--------chHHHHHHHHh-hcCCCeEeeeccceeeccCcCCCc
Confidence            4567888 5899999999999999999999998753        57788999998 589999999621     1221   


Q ss_pred             ---HhHHHHHhcCCCeEEEe
Q psy11600         78 ---QWIEPMADANVDQYTFH   94 (277)
Q Consensus        78 ---~~i~~l~~ag~d~i~~H   94 (277)
                         -+-+...-+|+|.+|+.
T Consensus       158 s~~vl~KL~RLaGaD~ih~~  177 (283)
T d1ykwa1         158 HSKVMTKLQRLAGLDAVIMP  177 (283)
T ss_dssp             CHHHHHHHHHHHTCSEEEEE
T ss_pred             cHHHHHHHHHHcCCCceeec
Confidence               13445556799999443

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

Probab=87.88  E-value=6.1  Score=32.39  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             hHHHHHhcCCCeEEEeccCC--CC---CHHHHHHHHhhCCCcccc---hhhhhHHHHh--cCCCeEE
Q psy11600         79 WIEPMADANVDQYTFHVEPV--DN---VPQVIRQIKEAGMKVGQV---LQDWIEPMAD--ANVDQYT  135 (277)
Q Consensus        79 ~i~~l~~ag~d~i~~H~e~~--d~---g~~~i~~i~~~~~~~~d~---p~~~i~~~~~--~g~d~it  135 (277)
                      ..+++.++|||+|-+=..+.  +.   -.++++.+++.++.|+.+   -.+.++.-.+  +|+++|-
T Consensus        30 ~A~~m~~~GAdiIDIg~g~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~~~v~~aal~~~~Ga~iIN   96 (262)
T d1f6ya_          30 WARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLKKCKNRAMIN   96 (262)
T ss_dssp             HHHHHHHHTCSEEEEBCC----CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHHhhcCCccccCCccHHHHHHHHhhcccceee
Confidence            46677788999993321211  11   345566666666666654   2334444344  5877653

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.69  E-value=1.5  Score=34.12  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=53.0

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHH-HhhCCC-cccc----hhhhhHHH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQI-KEAGMK-VGQV----LQDWIEPM  126 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i-~~~~~~-~~d~----p~~~i~~~  126 (277)
                      +.++.+|+..|..++.  +-+.++++ +....++|+|.+  .+|-|+  |+.+++. +..... .+.+    ..+-+..+
T Consensus        68 ~~~~~~~~~~~~~~Ie--VEv~~~~~-~~~a~~~g~diI--mLDN~~--pe~~~~av~~i~~~~~lEaSGgI~~~ni~~y  140 (167)
T d1qapa1          68 QAVEKAFWLHPDVPVE--VEVENLDE-LDDALKAGADII--MLDNFN--TDQMREAVKRVNGQARLEVSGNVTAETLREF  140 (167)
T ss_dssp             HHHHHHHHHSTTSCEE--EEESSHHH-HHHHHHTTCSEE--EESSCC--HHHHHHHHHTTCTTCCEEECCCSCHHHHHHH
T ss_pred             hhhHHHhhcCCCceEE--EecCcHHH-HHHHHhcCCcEE--EecCCC--HHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence            6777888776776655  46667665 556678899998  777554  5555444 333332 3333    68889999


Q ss_pred             HhcCCCeEEe
Q psy11600        127 ADANVDQYTF  136 (277)
Q Consensus       127 ~~~g~d~it~  136 (277)
                      ++.|+|+|+.
T Consensus       141 a~~GVD~IS~  150 (167)
T d1qapa1         141 AETGVDFISV  150 (167)
T ss_dssp             HHTTCSEEEC
T ss_pred             HHcCCCEEEC
Confidence            9999999986

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=87.28  E-value=6  Score=31.67  Aligned_cols=154  Identities=19%  Similarity=0.297  Sum_probs=83.7

Q ss_pred             HHHHHHHhhCCCcccc------hhhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCH--HhHHHH
Q psy11600        103 QVIRQIKEAGMKVGQV------LQDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPV--DVIAEY  174 (277)
Q Consensus       103 ~~i~~i~~~~~~~~d~------p~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~--~~i~~~  174 (277)
                      ++++.+++....++-.      -...++.+.+.|...+-+=+--. ...+.++.+++.  ..++-+-+||-+  +.+...
T Consensus         6 ~~~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~-~a~~~I~~l~~~--~p~~~vGaGTV~~~~~~~~a   82 (212)
T d1vhca_           6 QIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSE-AAADAIRLLRAN--RPDFLIAAGTVLTAEQVVLA   82 (212)
T ss_dssp             HHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST-THHHHHHHHHHH--CTTCEEEEESCCSHHHHHHH
T ss_pred             HHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCh-hHHHHHHHHHhc--CCCceEeeeecccHHHHHHH
Confidence            4566666655443321      35567889999999887766400 223444445432  134555566644  344444


Q ss_pred             HhhcCceEEEEecCCCCCchhhhhhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH-ccCCCCCccccc-C---HHHHH
Q psy11600        175 IESADLVLIMTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-CLTGFGGQKFMQ-D---MMPKV  249 (277)
Q Consensus       175 i~~~d~vl~mav~Pgt~gq~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~-~gpg~ggq~F~~-~---~~~kI  249 (277)
                      + +++.-.+  +.|++.     +++++   ..++    .++-...|+  +|..++.+ ...|+.--+|.| +   -...+
T Consensus        83 ~-~aGa~Fi--vSP~~~-----~~v~~---~a~~----~~i~~iPGv--~TpsEi~~A~~~G~~~vK~FPA~~~gG~~~l  145 (212)
T d1vhca_          83 K-SSGADFV--VTPGLN-----PKIVK---LCQD----LNFPITPGV--NNPMAIEIALEMGISAVKFFPAEASGGVKMI  145 (212)
T ss_dssp             H-HHTCSEE--ECSSCC-----HHHHH---HHHH----TTCCEECEE--CSHHHHHHHHHTTCCEEEETTTTTTTHHHHH
T ss_pred             H-hhCCcEE--ECCCCC-----HHHHH---HHHh----cCCCccCCc--CCHHHHHHHHHCCCCEEEEccccccchHHHH
Confidence            3 3333332  468764     22222   2222    122233333  56555442 223333334443 2   24567


Q ss_pred             HHHHhhCCCCeEEEeCCCCccCHHHhh
Q psy11600        250 KWLRENYPTLNIEVDGGVGPNTIDECA  276 (277)
Q Consensus       250 ~~l~~~~~~~~I~VDGGI~~~~~~~~~  276 (277)
                      +.++.-.|+..+..=||||.+|+++..
T Consensus       146 kal~~p~p~~~~~ptGGV~~~N~~~yl  172 (212)
T d1vhca_         146 KALLGPYAQLQIMPTGGIGLHNIRDYL  172 (212)
T ss_dssp             HHHHTTTTTCEEEEBSSCCTTTHHHHH
T ss_pred             HHHhccccCCeEEecCCCCHHHHHHHH
Confidence            777777889999999999999998754

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.01  E-value=2.9  Score=34.76  Aligned_cols=58  Identities=7%  Similarity=0.012  Sum_probs=35.4

Q ss_pred             HHhHHHHHhcCCCeEEEeccCC--CC---CHHHHHHHHhhCCCcccc---hhhhhHHHHhc--CCCeE
Q psy11600         77 QQWIEPMADANVDQYTFHVEPV--DN---VPQVIRQIKEAGMKVGQV---LQDWIEPMADA--NVDQY  134 (277)
Q Consensus        77 ~~~i~~l~~ag~d~i~~H~e~~--d~---g~~~i~~i~~~~~~~~d~---p~~~i~~~~~~--g~d~i  134 (277)
                      .+......++||+++-+..+..  +.   -.++++.++..++.|+.+   -.+.++.-.++  |+++|
T Consensus        43 ~~~A~~qv~~GA~iLDIn~~~~~~~e~~~m~~li~~l~~~~d~PlsIDT~~~~v~eaaLk~~~G~~iI  110 (260)
T d3bofa1          43 IKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLF  110 (260)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHHHcCCCEEEeecCCchhhhHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHhcCcceE
Confidence            3456667788999995544421  22   556777777777777644   34455555554  66655

>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.00  E-value=5.9  Score=33.80  Aligned_cols=163  Identities=19%  Similarity=0.279  Sum_probs=89.6

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEecc--------c--c--ccccCCCCCHHHHHHHHhcCCCCeeeeeee-----
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLDVM--------D--G--TFVPNLTFGHPVVKCLRNKIPKAFFETHMM-----   72 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~Dim--------D--g--~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlm-----   72 (277)
                      |.+...-..+|-++++++.+.|+..+  =+.        |  |  .|-|| .+=.+.++.+|+.+|++.+-+++-     
T Consensus        41 PGv~R~sid~L~~~ie~~~~lGI~ai--~LFpv~~~~~Kd~~gseA~n~~-~lv~rair~iK~~fpdl~vi~DVcLc~YT  117 (320)
T d1pv8a_          41 PGVARYGVKRLEEMLRPLVEEGLRCV--LIFGVPSRVPKDERGSAADSEE-SPAIEAIHLLRKTFPNLLVACDVCLCPYT  117 (320)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHTCCEE--EEEECC--------------CC-SHHHHHHHHHHHHSTTSEEEEEECCC---
T ss_pred             CCCcccCHHHHHHHHHHHHHCCCCEE--EEecccCccccCCCChhhhhhh-hhHHHHHHHHHHHhhcceEeecccccccc
Confidence            55666667789999999999999984  332        1  1  12222 233588999999999987744332     


Q ss_pred             --------ccC-----------cHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhh---CCC----cccc-----hhh
Q psy11600         73 --------VQN-----------PQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA---GMK----VGQV-----LQD  121 (277)
Q Consensus        73 --------v~~-----------p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~---~~~----~~d~-----p~~  121 (277)
                              ..+           +.+..-.+.++|||+|. ..|.|||-   |.+||+.   +..    ++.-     =..
T Consensus       118 ~hGHcGil~~~~~IdND~Tl~~L~k~Al~~A~AGaDiVA-PSdMMDGr---V~aIR~~Ld~~g~~~~v~ImSYsaKyaS~  193 (320)
T d1pv8a_         118 SHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVA-PSDMMDGR---VEAIKEALMAHGLGNRVSVMSYSAKFASC  193 (320)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHTCSEEE-ECC--CCH---HHHHHHHHHHTTCTTTCEEBCCCEECCCG
T ss_pred             cccccceeecccccCcHHHHHHHHHHHHHHHhcccceee-ecccchHH---HHHHHHHHHhcCCcccceeechhhhcCch
Confidence                    111           11223345678999996 78999984   4455543   211    1211     245


Q ss_pred             hhHHHHhcC------CCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCHHhHH----HHHhhcCceEEEEecCCCC
Q psy11600        122 WIEPMADAN------VDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPVDVIA----EYIESADLVLIMTVEPGFG  191 (277)
Q Consensus       122 ~i~~~~~~g------~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~~~i~----~~i~~~d~vl~mav~Pgt~  191 (277)
                      |..+|.++-      .|.=|.+.                        .|.-+-+.+.    +.-+-+|++   -|.|+.+
T Consensus       194 fYGPFRdA~~s~p~~gdr~tYQm------------------------d~~n~~eA~~e~~~D~~EGAD~l---MVKPa~~  246 (320)
T d1pv8a_         194 FYGPFRDAAKSSPAFGDRRCYQL------------------------PPGARGLALRAVDRDVREGADML---MVKPGMP  246 (320)
T ss_dssp             GGHHHHHCC-------------C------------------------CTTCHHHHHHHHHHHHHTTCSBE---EEESCGG
T ss_pred             hhhhhHHHHhcCccCCCcceeee------------------------CcchhHHHHHHHHHHHhcCCceE---eeehhHH
Confidence            666776642      13333333                        3333332222    233457775   3799864


Q ss_pred             CchhhhhhhhhHHHHHhhCCCc
Q psy11600        192 GQKFMQDMMPKVKWLRENYPTL  213 (277)
Q Consensus       192 gq~~~~~~l~kI~~l~~~~~~~  213 (277)
                             +|+-|+.+++...++
T Consensus       247 -------yLDiI~~~k~~~~~~  261 (320)
T d1pv8a_         247 -------YLDIVREVKDKHPDL  261 (320)
T ss_dssp             -------GHHHHHHHHHHSTTS
T ss_pred             -------HHHHHHHHHhhCCCC
Confidence                   688888888754443

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.54  E-value=0.58  Score=36.68  Aligned_cols=69  Identities=22%  Similarity=0.168  Sum_probs=41.6

Q ss_pred             hhHHHHHhhCCCccEEEeCCCCcCcHHHH---HHccCCC-CCcccccCHHHHHHHHH-hhCCCCeEEEeCCCCccCHHHh
Q psy11600        201 PKVKWLRENYPTLNIEVDGGVGPNTIDEC---AKCLTGF-GGQKFMQDMMPKVKWLR-ENYPTLNIEVDGGVGPNTIDEC  275 (277)
Q Consensus       201 ~kI~~l~~~~~~~~i~vdGgV~~~tv~~~---~~~gpg~-ggq~F~~~~~~kI~~l~-~~~~~~~I~VDGGI~~~~~~~~  275 (277)
                      +.++.++...+...++|    .+.|.+++   .++||+. =-..|   ..+.+++.- ...++..+|+-||||.+|+..+
T Consensus        68 ~~~~~~~~~~~~~~IeV----Ev~~~~~~~~a~~~g~diImLDN~---~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~y  140 (167)
T d1qapa1          68 QAVEKAFWLHPDVPVEV----EVENLDELDDALKAGADIIMLDNF---NTDQMREAVKRVNGQARLEVSGNVTAETLREF  140 (167)
T ss_dssp             HHHHHHHHHSTTSCEEE----EESSHHHHHHHHHTTCSEEEESSC---CHHHHHHHHHTTCTTCCEEECCCSCHHHHHHH
T ss_pred             hhhHHHhhcCCCceEEE----ecCcHHHHHHHHhcCCcEEEecCC---CHHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence            33455555666655554    35565554   4455553 11222   345555543 3457788999999999999876


Q ss_pred             h
Q psy11600        276 A  276 (277)
Q Consensus       276 ~  276 (277)
                      +
T Consensus       141 a  141 (167)
T d1qapa1         141 A  141 (167)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=86.51  E-value=2.1  Score=35.47  Aligned_cols=191  Identities=10%  Similarity=0.077  Sum_probs=108.4

Q ss_pred             HHHHHHHhcCCCCeeeeeeecc-----------CcHHhHHHHHhcCCCeEEEeccCC--CCCHHHHHHHHhhCCCcccc-
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQ-----------NPQQWIEPMADANVDQYTFHVEPV--DNVPQVIRQIKEAGMKVGQV-  118 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~-----------~p~~~i~~l~~ag~d~i~~H~e~~--d~g~~~i~~i~~~~~~~~d~-  118 (277)
                      .+.+.|+++ .+..+-+-++-.           +|.+..+.+ +.||..+++.-|..  .|....++++|+.+..|+.. 
T Consensus        30 ~f~~al~~~-~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~y-e~GA~aiSVLTd~~~F~Gs~~~l~~vr~~~~~PiLrK  107 (251)
T d1i4na_          30 RFLEVLSGK-ERVKIIAEFKKASPSAGDINADASLEDFIRMY-DELADAISILTEKHYFKGDPAFVRAARNLTCRPILAK  107 (251)
T ss_dssp             HHHHHHCCS-SSCEEEEEECSBCSSSCBSCTTCCHHHHHHHH-HHHCSEEEEECCCSSSCCCTHHHHHHHTTCCSCEEEE
T ss_pred             hHHHHHhcC-CCCeEEEeeecCCCCCCCCcCCccHHHHHHHH-hcCCcceEEecccCCCCCCHHHHHHHhhcccCchhhh
Confidence            455666543 344444444332           566778777 46999999998874  56889999999998888754 


Q ss_pred             ----hhhhhHHHHhcCCCeEEeecCCCCCh--HHHHHHHHHhCCccceeeCCCC---CHHhHHHHHhhcCceEEEEecCC
Q psy11600        119 ----LQDWIEPMADANVDQYTFHVEPVDNV--PQVIRQIKEAGMKVGLAIKPKT---PVDVIAEYIESADLVLIMTVEPG  189 (277)
Q Consensus       119 ----p~~~i~~~~~~g~d~it~H~E~~~~~--~~~~~~I~~~g~~~g~~i~p~t---~~~~i~~~i~~~d~vl~mav~Pg  189 (277)
                          -...|.+-..+|||.|.+-+.   .+  .++..+++.+   ..+|+.|=.   ..+++...+...+. -++.+|--
T Consensus       108 DFIid~~QI~ea~~~GADaiLLI~~---~L~~~~l~~l~~~a---~~lgle~LvEvh~~~El~~al~~~~a-~iiGINnR  180 (251)
T d1i4na_         108 DFYIDTVQVKLASSVGADAILIIAR---ILTAEQIKEIYEAA---EELGMDSLVEVHSREDLEKVFSVIRP-KIIGINTR  180 (251)
T ss_dssp             CCCCSTHHHHHHHHTTCSEEEEEGG---GSCHHHHHHHHHHH---HTTTCEEEEEECSHHHHHHHHTTCCC-SEEEEECB
T ss_pred             hhhhCHHHHHHHHhhccceEEeecc---cccHHHHHHHHHHH---HHhCCeeecccCCHHHHHHHhccccc-ceeeeeec
Confidence                345667778899999988775   33  2233333332   223332222   22344444443222 12344431


Q ss_pred             CCCchhhhhhhhhHHHHHhhCCC-ccEEEeCCC-CcCcHHHHHHccCCC---CCcccc-cCHHHHHHHHHhh
Q psy11600        190 FGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGV-GPNTIDECAKCLTGF---GGQKFM-QDMMPKVKWLREN  255 (277)
Q Consensus       190 t~gq~~~~~~l~kI~~l~~~~~~-~~i~vdGgV-~~~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~~~  255 (277)
                       .. .-++--++....+.+..|+ .-++.-.|| +.+.+..+ ++|.+.   |...+. ++..+.+++|+..
T Consensus       181 -dL-~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p~~~l~~l~a~  249 (251)
T d1i4na_         181 -DL-DTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENPRRFLEEMRAW  249 (251)
T ss_dssp             -CT-TTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSHHHHHHHHHHH
T ss_pred             -ch-hccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCHHHHHHHHHhc
Confidence             01 1111223445566666664 444556677 44555544 455552   555555 5788888888754

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=0.75  Score=38.47  Aligned_cols=76  Identities=11%  Similarity=0.126  Sum_probs=45.0

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccccccccCCCCCHH----HHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEE
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFGHP----VVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYT   92 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~----~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~   92 (277)
                      ...+.++++.+.+.|...  +-+.+|.+... ....+    .++.+++.  ...+.++....+. +.++.+.++|++.+.
T Consensus        75 ~e~i~~~~~~~~~~G~~~--~~~~~g~~~~~-~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~-e~l~~lk~aG~~~i~  148 (312)
T d1r30a_          75 VEQVLESARKAKAAGSTR--FCMGAAWKNPH-ERDMPYLEQMVQGVKAM--GLEACMTLGTLSE-SQAQRLANAGLDYYN  148 (312)
T ss_dssp             HHHHHHHHHHHHHTTCSE--EEEEECCSSCC-TTTHHHHHHHHHHHHHT--TSEEEEECSSCCH-HHHHHHHHHCCCEEE
T ss_pred             hHHHHHHHHHHHHcCCEE--EEEccCCCCCc-hhhHHHHHHHHHhcccc--cceeeeccccchH-HHHHHhhcccceeEe
Confidence            345567777788888877  55667765422 23333    33333332  3334444443333 357889999999997


Q ss_pred             EeccCC
Q psy11600         93 FHVEPV   98 (277)
Q Consensus        93 ~H~e~~   98 (277)
                      +-+|+.
T Consensus       149 ~~iEs~  154 (312)
T d1r30a_         149 HNLDTS  154 (312)
T ss_dssp             CCCBSC
T ss_pred             cccchh
Confidence            777763

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=85.37  E-value=8.4  Score=31.45  Aligned_cols=96  Identities=15%  Similarity=0.050  Sum_probs=63.7

Q ss_pred             HHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHHHhh----CCCc-ccch---hhhhH
Q psy11600         53 PVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEA----GMKV-GQVL---QDWIE  124 (277)
Q Consensus        53 ~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i~~~----~~~~-~d~p---~~~i~  124 (277)
                      ++-+.|++  -...+=+++...+|. .++.+..+|.|++.+..|-...+...+..+-..    ...+ +-+|   ..++.
T Consensus         6 ~lk~~l~~--g~~~~G~~~~~~~p~-~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~   82 (253)
T d1dxea_           6 KFKAALAA--KQVQIGCWSALSNPI-STEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIK   82 (253)
T ss_dssp             HHHHHHHT--TCCEEEEEECSCSHH-HHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHH
T ss_pred             HHHHHHHC--CCCEEEEEecCCCHH-HHHHHHcCCCCEEEEecccCCCChhHHHHHHHHHhccCCCceecCCCCCHHHHH
Confidence            44455554  355666777766554 577788899999988888766555554444333    2222 2233   56899


Q ss_pred             HHHhcCCCeEEe-ecCCCCChHHHHHHHHHh
Q psy11600        125 PMADANVDQYTF-HVEPVDNVPQVIRQIKEA  154 (277)
Q Consensus       125 ~~~~~g~d~it~-H~E~~~~~~~~~~~I~~~  154 (277)
                      ...++||+-|-| |++   +.++.-+.++..
T Consensus        83 ~~LD~Ga~GIivP~v~---s~eea~~~v~~~  110 (253)
T d1dxea_          83 RLLDIGFYNFLIPFVE---TKEEAELAVAST  110 (253)
T ss_dssp             HHHHTTCCEEEESCCC---SHHHHHHHHHTT
T ss_pred             HHHhcCccEEEecccC---CHHHHHHHHHhh
Confidence            999999987665 667   777777777764

>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.59  E-value=4.7  Score=33.56  Aligned_cols=163  Identities=12%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             ceEeeeccccCcccHHHHHHHHHHcCCCEEEEeccccccccCCCCC-HHHHHHHHhcCCCCeeeeeeeccC-----cHHh
Q psy11600          6 CMIGPSILNSDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTFG-HPVVKCLRNKIPKAFFETHMMVQN-----PQQW   79 (277)
Q Consensus         6 ~~~~~s~~~~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g-~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~   79 (277)
                      +-+.|.--..+..+|.+.++.|.+.+.++  ++|-||.-- +...+ ..+.+.+++  ..++.-+||-..+     ....
T Consensus        17 ~Ei~PPk~~~~~~~l~~~~~~L~~~~p~f--isVT~~~~g-~~~~~tl~~a~~l~~--~G~~~i~Hlt~r~~n~~~l~~~   91 (292)
T d1v93a_          17 FEFFPPKDPEGEEALFRTLEELKAFRPAF--VSITYGAMG-STRERSVAWAQRIQS--LGLNPLAHLTVAGQSRKEVAEV   91 (292)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHHHTTCCSE--EEECCCGGG-TTHHHHHHHHHHHHH--TTCCEEEEECCTTSCHHHHHHH
T ss_pred             EEEeCCCCchHHHHHHHHHHHHhcCCCCE--EEecCCCCC-ccchhHHHHHHHHHh--CCCCceeeeeecCchHHHHHHH
Confidence            34556554456678888999999888888  788886543 22222 345667775  5889999998765     3445


Q ss_pred             HHHHHhcCCCeEEEe-ccCCC-------------CCHHHHHHHHhhCCCccc---------ch--------hhhhHHHHh
Q psy11600         80 IEPMADANVDQYTFH-VEPVD-------------NVPQVIRQIKEAGMKVGQ---------VL--------QDWIEPMAD  128 (277)
Q Consensus        80 i~~l~~ag~d~i~~H-~e~~d-------------~g~~~i~~i~~~~~~~~d---------~p--------~~~i~~~~~  128 (277)
                      +..+.++|++-+-+= -|...             ...++++.+++.....+.         .|        .+++..=.+
T Consensus        92 l~~~~~~GI~niLal~GD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~ig~a~~Peghp~~~~~~~~~~~l~~K~~  171 (292)
T d1v93a_          92 LHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVE  171 (292)
T ss_dssp             HHHHHHTTCCEEEECCCCCCTTCSSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCeEeeccCCCCccCcccCCcccchhHHHHHHHHHHHhcCCCcccccccCCCCCccchhHHHHHHHHHHHHH
Confidence            777888999866322 22111             155778888775322111         12        344555678


Q ss_pred             cCCCeEE----eecCCCCChHHHHHHHHHhCC--ccceeeCCCCCHHhHHHHHh
Q psy11600        129 ANVDQYT----FHVEPVDNVPQVIRQIKEAGM--KVGLAIKPKTPVDVIAEYIE  176 (277)
Q Consensus       129 ~g~d~it----~H~E~~~~~~~~~~~I~~~g~--~~g~~i~p~t~~~~i~~~i~  176 (277)
                      +||+++.    |..|   ...+..+.+++.|+  ..-.|+.|=++...+..+..
T Consensus       172 aGA~fiiTQ~~FD~~---~~~~~~~~~r~~gi~~Pi~~Gi~p~~s~~~l~~~~~  222 (292)
T d1v93a_         172 AGLDFAITQLFFNNA---HYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTE  222 (292)
T ss_dssp             TTCSEEEEEECSSHH---HHHHHHHHHHHTTCCSCEEEEECCCCCHHHHHHHHH
T ss_pred             hccCeEEEeeeccHH---HHHHHHHHHHHhccCCCccccccchhHHHHHHHHHh
Confidence            9998764    4334   34455555566554  45677777777766555433

>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=4.1  Score=33.72  Aligned_cols=154  Identities=11%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             cCcccHHHHHHHHHHcCCCEEEEeccccccccCCCC-CHHHHHHHHhcCCCCeeeeeeeccC-----cHHhHHHHHhcCC
Q psy11600         15 SDLSNLHSESQNLLDSGADYLHLDVMDGTFVPNLTF-GHPVVKCLRNKIPKAFFETHMMVQN-----PQQWIEPMADANV   88 (277)
Q Consensus        15 ~d~~~l~~~~~~l~~~~~~~~h~DimDg~fvp~~~~-g~~~v~~l~~~~~~~~~d~Hlmv~~-----p~~~i~~l~~ag~   88 (277)
                      .+..+|.+.++.|.+.+.++  ++|-||.-- +... ...+.+.+++. .+++.-+|+-..+     ....+..+.++|+
T Consensus        16 ~~~~~l~~~~~~L~~~~p~~--vsVT~~agg-s~~~~t~~~a~~l~~~-~g~~~i~Hlt~r~~n~~~l~~~l~~~~~~GI   91 (275)
T d1b5ta_          16 EMEQTLWNSIDRLSSLKPKF--VSVTYGANS-GERDRTHSIIKGIKDR-TGLEAAPHLTCIDATPDELRTIARDYWNNGI   91 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCCSE--EEECCCSSH-HHHHHHHHHHHHHHHH-HCCCEEEEECSTTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCCCE--EEeccCCCC-cchhhHHHHHHHHHhh-cCCCceeeeccccccHhHHHHHHHHHHHHhh
Confidence            44567788899998887888  888775431 1111 23456778764 6899999999876     3335777788999


Q ss_pred             CeEEE-eccCCC-------CCHHHHHHHHhhCCCcccc---------------hhhhhHHHHhcCCCeEEeec----CCC
Q psy11600         89 DQYTF-HVEPVD-------NVPQVIRQIKEAGMKVGQV---------------LQDWIEPMADANVDQYTFHV----EPV  141 (277)
Q Consensus        89 d~i~~-H~e~~d-------~g~~~i~~i~~~~~~~~d~---------------p~~~i~~~~~~g~d~it~H~----E~~  141 (277)
                      +-+-+ --|...       ...+.++.+|......+-+               ...+++.=.++||+++.=++    |  
T Consensus        92 ~niL~l~GD~~~~~~~~~~~a~dlv~li~~~~~~~igva~~Peghp~~~~~~~~~~~lk~K~~aGA~fiiTQ~~fD~~--  169 (275)
T d1b5ta_          92 RHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVE--  169 (275)
T ss_dssp             CEEEECCCCCCSSSCCCCCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEEEEECSCHH--
T ss_pred             CeEEEecCCCCCCCCCCcccHHHHHHHHHHHHhcCCceeecCCCCccchhHHHHHHHHHHHHHhhcCeeeeeeeecHH--
Confidence            87632 223211       1456777888775432211               13344444678999775443    3  


Q ss_pred             CChHHHHHHHHHhCC--ccceeeCCCCCHHhHHHHH
Q psy11600        142 DNVPQVIRQIKEAGM--KVGLAIKPKTPVDVIAEYI  175 (277)
Q Consensus       142 ~~~~~~~~~I~~~g~--~~g~~i~p~t~~~~i~~~i  175 (277)
                       ...+..+.+++.|+  ..=.|+.|=++...+..+.
T Consensus       170 -~~~~~~~~~~~~gi~~Pi~~GI~p~~s~~~l~~~~  204 (275)
T d1b5ta_         170 -SYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFA  204 (275)
T ss_dssp             -HHHHHHHHHHHTTCCSCEEEEECCCSCHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCCcccccccchHHHHHHHHHH
Confidence             33345555566554  3466777777776655543

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.74  E-value=3.3  Score=33.80  Aligned_cols=109  Identities=13%  Similarity=0.157  Sum_probs=71.6

Q ss_pred             HHHHHHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCC--CCeeeeeeecc-----------------CcHHhHH
Q psy11600         21 HSESQNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIP--KAFFETHMMVQ-----------------NPQQWIE   81 (277)
Q Consensus        21 ~~~~~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~--~~~~d~Hlmv~-----------------~p~~~i~   81 (277)
                      .+.++.+.+.|++.+   ++.+....    .+++++++.+.+.  .+-+.++..-.                 +|.++++
T Consensus        88 ~e~~~~ll~~G~~kV---ii~s~~~~----~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~  160 (252)
T d1h5ya_          88 LEDATTLFRAGADKV---SVNTAAVR----NPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAK  160 (252)
T ss_dssp             HHHHHHHHHHTCSEE---EESHHHHH----CTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHH
T ss_pred             hhhhhhHhhcCCcEE---EecccccC----CcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHH
Confidence            367778888899995   33332332    4566777665553  24444444311                 5788999


Q ss_pred             HHHhcCCCeEEEeccCCCC-----CHHHHHHHHhhCCCcccc-----hhhhhHHHHhcCCCeEEe
Q psy11600         82 PMADANVDQYTFHVEPVDN-----VPQVIRQIKEAGMKVGQV-----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        82 ~l~~ag~d~i~~H~e~~d~-----g~~~i~~i~~~~~~~~d~-----p~~~i~~~~~~g~d~it~  136 (277)
                      .+.+.|+..+.++--..||     ..++++.+++.+..|+-.     ..+-++.+.+.|++-+.+
T Consensus       161 ~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g~~gv~~  225 (252)
T d1h5ya_         161 EVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA  225 (252)
T ss_dssp             HHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence            9999999877655322343     478999999888777654     445566778889888754

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=82.38  E-value=1.7  Score=35.10  Aligned_cols=137  Identities=16%  Similarity=0.229  Sum_probs=74.0

Q ss_pred             hhhhHHHHhcCCCeEEeecCCCCChHHHHHHHHHhCCccceeeCCCCCH--HhHHHHHhhcCceEEEEecCCCCCchhhh
Q psy11600        120 QDWIEPMADANVDQYTFHVEPVDNVPQVIRQIKEAGMKVGLAIKPKTPV--DVIAEYIESADLVLIMTVEPGFGGQKFMQ  197 (277)
Q Consensus       120 ~~~i~~~~~~g~d~it~H~E~~~~~~~~~~~I~~~g~~~g~~i~p~t~~--~~i~~~i~~~d~vl~mav~Pgt~gq~~~~  197 (277)
                      ...++.+.+.|...+-+-+-.. ...+.++.+++.  ...+-+-+||-+  +.+...+ +++.-.+  +.|++..     
T Consensus        30 ~~~~~al~~~Gi~~iEitl~tp-~a~~~I~~l~~~--~p~~~vGaGTV~~~~~~~~a~-~aGa~Fi--vSP~~~~-----   98 (213)
T d1wbha1          30 VPMAKALVAGGVRVLNVTLRTE-CAVDAIRAIAKE--VPEAIVGAGTVLNPQQLAEVT-EAGAQFA--ISPGLTE-----   98 (213)
T ss_dssp             HHHHHHHHHTTCCEEEEESCST-THHHHHHHHHHH--CTTSEEEEESCCSHHHHHHHH-HHTCSCE--EESSCCH-----
T ss_pred             HHHHHHHHHCCCCEEEEeCCCh-hHHHHHHHHHHH--CCCCeeeccccccHHHHHHHH-HCCCcEE--ECCCCCH-----
Confidence            4567888888888876655300 223444444432  123444455543  4444443 3333332  3587641     


Q ss_pred             hhhhhHHHHHhhCCCccEEEeCCCCcCcHHHHHH-ccCCCCCcccccC----HHHHHHHHHhhCCCCeEEEeCCCCccCH
Q psy11600        198 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-CLTGFGGQKFMQD----MMPKVKWLRENYPTLNIEVDGGVGPNTI  272 (277)
Q Consensus       198 ~~l~kI~~l~~~~~~~~i~vdGgV~~~tv~~~~~-~gpg~ggq~F~~~----~~~kI~~l~~~~~~~~I~VDGGI~~~~~  272 (277)
                      ++   ++..++.    .+-+..|+  +|.-++.+ ...|+.-.+|.|.    ....++.++.-.|+..+..=||||.+|+
T Consensus        99 ~v---~~~a~~~----~i~~iPGv--~TpsEi~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~p~p~~~~~ptGGV~~~n~  169 (213)
T d1wbha1          99 PL---LKAATEG----TIPLIPGI--STVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANY  169 (213)
T ss_dssp             HH---HHHHHHS----SSCEEEEE--SSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTH
T ss_pred             HH---HHHHHhc----CCCccCCc--CCHHHHHHHHHCCCCEEEeccchhcChHHHHHHhcCcccCCceeeeCCCCHHHH
Confidence            22   2222221    11122222  45555433 3344445555542    2567778888888999999999999999


Q ss_pred             HHhh
Q psy11600        273 DECA  276 (277)
Q Consensus       273 ~~~~  276 (277)
                      .+..
T Consensus       170 ~~yl  173 (213)
T d1wbha1         170 RDYL  173 (213)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.70  E-value=15  Score=31.47  Aligned_cols=96  Identities=21%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             eeccccCcccHHHHHHHHHHcCCCEEEEe---ccc------cccc--cCCCCCHHHHHHHHhcCCCCeeeeeeecc----
Q psy11600         10 PSILNSDLSNLHSESQNLLDSGADYLHLD---VMD------GTFV--PNLTFGHPVVKCLRNKIPKAFFETHMMVQ----   74 (277)
Q Consensus        10 ~s~~~~d~~~l~~~~~~l~~~~~~~~h~D---imD------g~fv--p~~~~g~~~v~~l~~~~~~~~~d~Hlmv~----   74 (277)
                      |.+......+|-++++.+.+.|+..+=+=   +.+      |...  |+ .+=.+.|+.+|+.+|++.+-+++-.+    
T Consensus        61 PGi~R~Sid~L~~eie~~~~lGI~av~LF~vpi~~~~Kd~~gseA~n~~-~lv~rAIr~iK~~fpdl~vi~DVcLcpYT~  139 (340)
T d1h7na_          61 PNINRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPA-GPVIQGIKFIREYFPELYIICDVCLCEYTS  139 (340)
T ss_dssp             TTCEEECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTT-SHHHHHHHHHHHHCTTSEEEEEECSTTTBT
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCCeeecCCCCCCCCCCCCcchhhhhhc-cHHHHHHHHHHhhhcccEEEeccccchhhh
Confidence            55555566688999999999999984332   111      1111  11 11247899999999998876655321    


Q ss_pred             -------------CcHHhHH-------HHHhcCCCeEEEeccCCCCCHHHHHHHHh
Q psy11600         75 -------------NPQQWIE-------PMADANVDQYTFHVEPVDNVPQVIRQIKE  110 (277)
Q Consensus        75 -------------~p~~~i~-------~l~~ag~d~i~~H~e~~d~g~~~i~~i~~  110 (277)
                                   |-.+.++       .+.++|||+|. ..|.|||-   |.+||+
T Consensus       140 hGHcGil~~~~~innd~Tl~~L~k~Al~~A~AGaDiVA-PSDMMDGr---V~aIR~  191 (340)
T d1h7na_         140 HGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVA-PSDMIDGR---IRDIKR  191 (340)
T ss_dssp             TCCSSCBCTTSSBCHHHHHHHHHHHHHHHHHHTCSEEE-ECCCCTTH---HHHHHH
T ss_pred             hcccccccccccccchHHHHHHHHHHHHHHHccCCccc-ccccchhH---HHHHHH
Confidence                         1112233       34678999996 78999984   444443

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=81.59  E-value=9  Score=29.84  Aligned_cols=98  Identities=14%  Similarity=-0.002  Sum_probs=59.9

Q ss_pred             HHHHHcCCCEEEEeccccccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEecc--CC----
Q psy11600         25 QNLLDSGADYLHLDVMDGTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFHVE--PV----   98 (277)
Q Consensus        25 ~~l~~~~~~~~h~DimDg~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e--~~----   98 (277)
                      +...+.|+|.+|+-=.|        ....   ..|...++..+  -.-+.+.+ ++....+.|+||+.|-.-  +.    
T Consensus        71 ~lA~~~~adGvHl~~~~--------~~~~---~~~~~~~~~ii--g~s~h~~~-e~~~a~~~g~DYi~~gpvf~T~tk~~  136 (206)
T d1xi3a_          71 DVALAVDADGVQLGPED--------MPIE---VAKEIAPNLII--GASVYSLE-EALEAEKKGADYLGAGSVFPTKTKED  136 (206)
T ss_dssp             HHHHHHTCSEEEECTTS--------CCHH---HHHHHCTTSEE--EEEESSHH-HHHHHHHHTCSEEEEECSSCC----C
T ss_pred             HHHHhccCceEeecccc--------ccHh---hhhhccccccc--ccccCCHH-HHHHHHhcCCCEEEeccccccccccc
Confidence            34455678888884332        2222   22333345433  22333444 455667779999987742  11    


Q ss_pred             --CCCHHHHHHHHhhCCCcccc----hhhhhHHHHhcCCCeEEe
Q psy11600         99 --DNVPQVIRQIKEAGMKVGQV----LQDWIEPMADANVDQYTF  136 (277)
Q Consensus        99 --d~g~~~i~~i~~~~~~~~d~----p~~~i~~~~~~g~d~it~  136 (277)
                        ..|...++++++.+..|+-+    -.+-+..+.++|++.+.+
T Consensus       137 ~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAv  180 (206)
T d1xi3a_         137 ARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAV  180 (206)
T ss_dssp             CCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEE
T ss_pred             cccccHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHhCCCEEEE
Confidence              12888899998888777644    344578899999999954

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=81.20  E-value=3  Score=35.11  Aligned_cols=77  Identities=12%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcCCCCeeeeeeeccCcHHhHHHHHhcCCCeEEEe
Q psy11600         17 LSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKIPKAFFETHMMVQNPQQWIEPMADANVDQYTFH   94 (277)
Q Consensus        17 ~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~~~~~~d~Hlmv~~p~~~i~~l~~ag~d~i~~H   94 (277)
                      +.+.++..+.+++.|+|+|-+-|=-  |.|-+.-.+..+.++++++. .++|+..|==..-|.++++++.+.|+.-+.+.
T Consensus       153 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~-~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~  231 (284)
T d1gvfa_         153 LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREV-VDVPLVLHGASDVPDEFVRRTIELGVTKVNVA  231 (284)
T ss_dssp             SCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHH-CCSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred             cCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhcc-ccCCeEeeCCCCCCHHHHHHHHHcCeEEEEec
Confidence            5678889999999999999998877  66655545666899999987 78999999999999999999999998888444

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=80.95  E-value=2.1  Score=34.26  Aligned_cols=125  Identities=16%  Similarity=0.172  Sum_probs=70.9

Q ss_pred             HHHHhcCCCeEEe-ecCCCCCh---HHHHHHHHHhCCccceeeCCCCCHHhHHHHHhhcCceEEEEecC----CCCC---
Q psy11600        124 EPMADANVDQYTF-HVEPVDNV---PQVIRQIKEAGMKVGLAIKPKTPVDVIAEYIESADLVLIMTVEP----GFGG---  192 (277)
Q Consensus       124 ~~~~~~g~d~it~-H~E~~~~~---~~~~~~I~~~g~~~g~~i~p~t~~~~i~~~i~~~d~vl~mav~P----gt~g---  192 (277)
                      +.+.+.|++++-+ |.|--...   ...++..++.|++.-+.  .+.+.+  ...+...+- .+++.+|    ||+.   
T Consensus        81 ~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~c--v~~~~~--~~~~~~~~~-~iiAyEpvwaIGtg~~~~  155 (224)
T d1hg3a_          81 EAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVC--SNNPAV--SAAVAALNP-DYVAVEPPELIGTGIPVS  155 (224)
T ss_dssp             HHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEE--ESSHHH--HHHHHTTCC-SEEEECCTTTTTTSCCTT
T ss_pred             hhccccCcceeeeccccccccccchhHHHHHHHHcCCceeec--hhhHHH--HHhhhhccc-ceEEecchHhhccccCCC
Confidence            5667889988765 55511112   23334444555444333  233321  112222222 3578888    4432   


Q ss_pred             chhhhhhhhhHHHHHhhCCCccEEEeCCCCc-CcHHHHHHccCCC---CCcccc-cCHHHHHHHHH
Q psy11600        193 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKCLTGF---GGQKFM-QDMMPKVKWLR  253 (277)
Q Consensus       193 q~~~~~~l~kI~~l~~~~~~~~i~vdGgV~~-~tv~~~~~~gpg~---ggq~F~-~~~~~kI~~l~  253 (277)
                      ....+++...++.+++..+++.+...|||+. +.+..+.+.|.+.   ||..+. ++..+.++++.
T Consensus       156 ~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~  221 (224)
T d1hg3a_         156 KAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLV  221 (224)
T ss_dssp             TSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHH
Confidence            1223444455666667788899999999985 5566677777774   777776 46666666654

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.89  E-value=5.7  Score=33.03  Aligned_cols=90  Identities=12%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             CcccHHHHHHHHHHcCCCEEEEeccc-----------cccccCCC------C-----------CHHHHHHHHhcCCCCee
Q psy11600         16 DLSNLHSESQNLLDSGADYLHLDVMD-----------GTFVPNLT------F-----------GHPVVKCLRNKIPKAFF   67 (277)
Q Consensus        16 d~~~l~~~~~~l~~~~~~~~h~DimD-----------g~fvp~~~------~-----------g~~~v~~l~~~~~~~~~   67 (277)
                      +..+..+-.+.+++.|++.+  .+.+           +...+.+.      +           ..+.|+.+++..+++|+
T Consensus       181 ~~~~~~~i~~~~~~~g~~gi--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipI  258 (312)
T d1gtea2         181 NVTDIVSIARAAKEGGADGV--TATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPI  258 (312)
T ss_dssp             CSSCHHHHHHHHHHHTCSEE--EECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCE
T ss_pred             cchhHHHHHHHHHHhcccce--EEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcE
Confidence            33455555677888899984  4433           22222211      1           15778888988777777


Q ss_pred             eeeeeccCcHHhHHHHHhcCCCeEEEeccCCCCCHHHHHHH
Q psy11600         68 ETHMMVQNPQQWIEPMADANVDQYTFHVEPVDNVPQVIRQI  108 (277)
Q Consensus        68 d~Hlmv~~p~~~i~~l~~ag~d~i~~H~e~~d~g~~~i~~i  108 (277)
                      -.-==|.++++.++.+ .+||+.+.+.-..+..||.+++.|
T Consensus       259 i~~GGI~~~~d~~~~l-~aGA~~Vqv~ta~~~~G~~~i~~i  298 (312)
T d1gtea2         259 LATGGIDSAESGLQFL-HSGASVLQVCSAVQNQDFTVIQDY  298 (312)
T ss_dssp             EEESSCCSHHHHHHHH-HTTCSEEEESHHHHTSCTTHHHHH
T ss_pred             EEEcCCCCHHHHHHHH-HcCCCeeEECHhhhccChHHHHHH
Confidence            6554566888777755 689999955444444466666655

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=80.54  E-value=1.4  Score=36.42  Aligned_cols=76  Identities=13%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             eccccCcccHHHHHHHHHHcCCCEEEEeccc--cccccCCCCCHHHHHHHHhcC-CCCeeeeeeeccC---cHHhHHHHH
Q psy11600         11 SILNSDLSNLHSESQNLLDSGADYLHLDVMD--GTFVPNLTFGHPVVKCLRNKI-PKAFFETHMMVQN---PQQWIEPMA   84 (277)
Q Consensus        11 s~~~~d~~~l~~~~~~l~~~~~~~~h~DimD--g~fvp~~~~g~~~v~~l~~~~-~~~~~d~Hlmv~~---p~~~i~~l~   84 (277)
                      ..-..|...+.+..+.+++.|++.  +=+.|  |...|+-  =.+.++.+|+.+ |++++.+|.=-..   ..+.+ ...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~g~~~--I~l~DT~G~~~P~~--v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l-~A~  215 (289)
T d1nvma2         141 MSHMIPAEKLAEQGKLMESYGATC--IYMADSGGAMSMND--IRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSI-VAV  215 (289)
T ss_dssp             STTSSCHHHHHHHHHHHHHHTCSE--EEEECTTCCCCHHH--HHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHH-HHH
T ss_pred             eccccCchhhhHHHHhhcccccee--eeecchhhcccchh--HHHHHHHHHHHhcccccceeeechHHHHHHHHHH-HHH
Confidence            334456667888999999999999  55677  6655552  236778888876 6789999987654   22334 345


Q ss_pred             hcCCCeE
Q psy11600         85 DANVDQY   91 (277)
Q Consensus        85 ~ag~d~i   91 (277)
                      ++|++++
T Consensus       216 ~~G~~~i  222 (289)
T d1nvma2         216 EEGCDRV  222 (289)
T ss_dssp             HTTCCEE
T ss_pred             HhCCcEe
Confidence            7899997

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=80.47  E-value=5.1  Score=33.76  Aligned_cols=96  Identities=19%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             HHHHhcCCC-CeeeeeeeccCcHHh-HHHHHhcCCCeEEEeccCCCCCH----HHHHHHHhhCC--C-c-ccch---hhh
Q psy11600         56 KCLRNKIPK-AFFETHMMVQNPQQW-IEPMADANVDQYTFHVEPVDNVP----QVIRQIKEAGM--K-V-GQVL---QDW  122 (277)
Q Consensus        56 ~~l~~~~~~-~~~d~Hlmv~~p~~~-i~~l~~ag~d~i~~H~e~~d~g~----~~i~~i~~~~~--~-~-~d~p---~~~  122 (277)
                      +.||+...+ .+..+.+++.=|..+ .+.+..+|.||+.+..|-.....    ..+.+++....  . + +-+|   ..+
T Consensus        29 ~~l~~~~~~~~~~~~G~~~~~~s~~~~e~~a~~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~  108 (299)
T d1izca_          29 QALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVS  108 (299)
T ss_dssp             HHHHHHHHCGGGCEEEEEECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHH
T ss_pred             HHHHHHhhccCCceeeeeccCCCHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHH
Confidence            355543222 355677777777766 67778899999998888654433    33455554432  1 2 2333   457


Q ss_pred             hHHHHhcCCCeEEe-ecCCCCChHHHHHHHHHh
Q psy11600        123 IEPMADANVDQYTF-HVEPVDNVPQVIRQIKEA  154 (277)
Q Consensus       123 i~~~~~~g~d~it~-H~E~~~~~~~~~~~I~~~  154 (277)
                      |+.+.++||+.|-| |+|   +.++..+.++..
T Consensus       109 I~~~LD~Ga~GIivP~V~---s~eea~~~v~~~  138 (299)
T d1izca_         109 LSTALDAGAAGIVIPHVE---TVEEVREFVKEM  138 (299)
T ss_dssp             HHHHHHHTCSEEEETTCC---CHHHHHHHHHHH
T ss_pred             HHHHHHhCcCeeeccccc---cHHHHHHHHHhh
Confidence            89999999995555 567   777777777664