Psyllid ID: psy11601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
EccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtvepgfggqkfmqdmmpkvkwlrenyptlnievdggvgpntIDECAKAGANWIVsgtavincpDRIQAISTLKSSVQKYLS
Flexible Loop (DISEMBL)
mtvepgfggqkfmQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS
Low Complexity Region (SEG)
MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS
Disordered region (IsUnstruct)
***************MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAIST**********
Disordered Region (DISOPRED)
MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV*****
Disordered Region (DISEMBL)
MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL*********
Disordered Region (DISPRO)
*TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q8VEE0	228	Ribulose-phosphate 3-epim	yes	N/A	0.914	0.328	0.653	3e-24
Q96AT9	228	Ribulose-phosphate 3-epim	yes	N/A	0.914	0.328	0.64	4e-24
Q5R5Y2	228	Ribulose-phosphate 3-epim	yes	N/A	0.914	0.328	0.64	4e-24
P46969	238	Ribulose-phosphate 3-epim	yes	N/A	0.987	0.340	0.617	7e-22
Q6FL81	246	Ribulose-phosphate 3-epim	yes	N/A	0.987	0.329	0.604	2e-21
Q755M2	239	Ribulose-phosphate 3-epim	yes	N/A	0.987	0.338	0.604	3e-21
Q9SE42	228	Ribulose-phosphate 3-epim	yes	N/A	0.951	0.342	0.589	3e-21
O14105	228	Ribulose-phosphate 3-epim	yes	N/A	0.963	0.346	0.569	4e-19
Q9L0Z5	228	Ribulose-phosphate 3-epim	yes	N/A	0.914	0.328	0.455	8e-13
P74061	230	Ribulose-phosphate 3-epim	N/A	N/A	0.926	0.330	0.45	5e-12

>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM+DMMPKV WLR  +PTL+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAI 200

Query: 61  INCPDRIQAISTLKS 75
           +   D    I+ L++
Sbjct: 201 MRSDDPRAVINLLRN 215

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1

>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 62/75 (82%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200

Query: 61  INCPDRIQAISTLKS 75
           +   D    I+ L++
Sbjct: 201 MRSEDPRSVINLLRN 215

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 62/75 (82%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200

Query: 61  INCPDRIQAISTLKS 75
           +   D    I+ L++
Sbjct: 201 MRSEDPRSVINLLRN 215

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 59/81 (72%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM+DMMPKV+ LR  +P LNI+VDGG+G  TI + AKAGAN IV+GT+V
Sbjct: 151 MTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSV 210

Query: 61  INCPDRIQAISTLKSSVQKYL 81
               D    IS +K  V K L
Sbjct: 211 FTAADPHDVISFMKEEVSKEL 231

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate (By similarity). Involved in the protective response to oxidative stress.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPE1 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 59/81 (72%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM DMMPKV+ LR  +P +NI+VDGG+G  TI   AKAGAN IV+GT+V
Sbjct: 154 MTVEPGFGGQKFMPDMMPKVEALRTKFPHMNIQVDGGLGKETIGVAAKAGANVIVAGTSV 213

Query: 61  INCPDRIQAISTLKSSVQKYL 81
               D  + IS +K  V+K L
Sbjct: 214 FTASDPHEVISFMKEEVRKEL 234

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 59/81 (72%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM DMMPKV  LRE +P L+I+VDGG+G  TI   AKAGAN IV+GT+V
Sbjct: 149 MTVEPGFGGQKFMPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAAKAGANVIVAGTSV 208

Query: 61  INCPDRIQAISTLKSSVQKYL 81
               D+   IS +K +V+  L
Sbjct: 209 FAAADQKDVISYMKDNVRDEL 229

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204

Query: 61  INCPDRIQAISTLKSSVQ 78
               +  + IS L+ SV+
Sbjct: 205 FGAAEPGEVISALRKSVE 222

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 58/79 (73%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPG GGQ FM + +PKV++LR+ YPTLN+EVDGG+   T+D  A AGAN IV+GTAV
Sbjct: 141 MTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAADAGANVIVAGTAV 200

Query: 61  INCPDRIQAISTLKSSVQK 79
            +     + IS L++SV K
Sbjct: 201 FHAQSPEEVISGLRNSVMK 219

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 4/79 (5%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           MTVEPGFGGQ F+  M+PK++  RE    +   L ++VDGGV   TI+ CA AGA+  V+
Sbjct: 135 MTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGVSAATIERCADAGADVFVA 194

Query: 57  GTAVINCPDRIQAISTLKS 75
           G+AV    D  +A+  L++
Sbjct: 195 GSAVYGASDPAEAVRALRT 213

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpe PE=1 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 4/80 (5%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+ +++PK++ LR+  +   L+  IEVDGG+ PN   +  +AGAN IV+
Sbjct: 141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200

Query: 57  GTAVINCPDRIQAISTLKSS 76
           G+AV N P+  +AI+ +++S
Sbjct: 201 GSAVFNAPNYAEAIAGVRNS 220

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
195383236	221	GJ20270 [Drosophila virilis] gi|19414512	0.987	0.366	0.716	8e-28
194755605	221	GF11711 [Drosophila ananassae] gi|190621	0.987	0.366	0.728	9e-28
195028967	221	GH20024 [Drosophila grimshawi] gi|193903	0.987	0.366	0.716	1e-27
195121434	221	GI19203 [Drosophila mojavensis] gi|19391	0.987	0.366	0.716	1e-27
94469030	224	ribulose-5-phosphate-3-epimerase [Aedes	0.951	0.348	0.743	3e-27
157126418	224	ribulose-5-phosphate-3-epimerase [Aedes	0.951	0.348	0.743	4e-27
24586301	221	CG30499, isoform A [Drosophila melanogas	0.987	0.366	0.716	6e-27
195581258	221	GD10239 [Drosophila simulans] gi|1941924	0.987	0.366	0.716	6e-27
195332161	221	GM20778 [Drosophila sechellia] gi|194124	0.987	0.366	0.716	6e-27
289741201	228	d-ribulose-5-phosphate 3-epimerase [Glos	0.975	0.350	0.712	1e-26

>gi|195383236|ref|XP_002050332.1| GJ20270 [Drosophila virilis] gi|194145129|gb|EDW61525.1| GJ20270 [Drosophila virilis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 66/81 (81%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKV+WLR NYP L+IEVDGGVGP TID CAKAGANWIVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVEWLRTNYPNLDIEVDGGVGPKTIDCCAKAGANWIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D+ Q I  ++  V++YL
Sbjct: 200 VGAADQRQVIGDMRDVVKRYL 220

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755605|ref|XP_001960074.1| GF11711 [Drosophila ananassae] gi|190621372|gb|EDV36896.1| GF11711 [Drosophila ananassae]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 66/81 (81%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKV+WLRENYP L+IEVDGGVGP TI+ CAK+GAN IVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVEWLRENYPNLDIEVDGGVGPKTIECCAKSGANMIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +  PD+ Q I  L+  VQ YL
Sbjct: 200 VGAPDQGQVIRQLRDVVQSYL 220

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028967|ref|XP_001987346.1| GH20024 [Drosophila grimshawi] gi|193903346|gb|EDW02213.1| GH20024 [Drosophila grimshawi]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 66/81 (81%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKV+WLR NYP L+IEVDGGVGP TID CAKAGANWIVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVEWLRNNYPNLDIEVDGGVGPKTIDCCAKAGANWIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D+ Q I  +++ V+ YL
Sbjct: 200 VGAADQRQVIGDMRNVVKSYL 220

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121434|ref|XP_002005225.1| GI19203 [Drosophila mojavensis] gi|193910293|gb|EDW09160.1| GI19203 [Drosophila mojavensis]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 66/81 (81%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKV+WLR NYP L+IEVDGGVGP TID CAKAGANWIVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVEWLRNNYPNLDIEVDGGVGPKTIDCCAKAGANWIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D+ Q I  +++ V+ YL
Sbjct: 200 VGSADQRQVIGEMRNVVKSYL 220

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469030|gb|ABF18364.1| ribulose-5-phosphate-3-epimerase [Aedes aegypti]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 64/78 (82%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM DMMPKV+WLRENYP L+IEVDGGVGP TID CAKAGAN IV+GTA+
Sbjct: 142 MTVEPGFGGQKFMNDMMPKVQWLRENYPNLDIEVDGGVGPGTIDACAKAGANMIVAGTAI 201

Query: 61  INCPDRIQAISTLKSSVQ 78
           I   D+   I  LK SV+
Sbjct: 202 IRADDQAAVIRQLKHSVE 219

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126418|ref|XP_001660886.1| ribulose-5-phosphate-3-epimerase [Aedes aegypti] gi|108873289|gb|EAT37514.1| AAEL010505-PA [Aedes aegypti]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 63/78 (80%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM DMMPKV WLRENYP L+IEVDGGVGP TID CAKAGAN IV+GTA+
Sbjct: 142 MTVEPGFGGQKFMNDMMPKVHWLRENYPNLDIEVDGGVGPGTIDACAKAGANMIVAGTAI 201

Query: 61  INCPDRIQAISTLKSSVQ 78
           I   D+   I  LK SV+
Sbjct: 202 IRADDQAAVIRQLKHSVE 219

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24586301|ref|NP_610298.2| CG30499, isoform A [Drosophila melanogaster] gi|442622788|ref|NP_001260780.1| CG30499, isoform B [Drosophila melanogaster] gi|16768878|gb|AAL28658.1| LD09559p [Drosophila melanogaster] gi|21645589|gb|AAM71098.1| CG30499, isoform A [Drosophila melanogaster] gi|220942676|gb|ACL83881.1| CG30499-PA [synthetic construct] gi|220952920|gb|ACL89003.1| CG30499-PA [synthetic construct] gi|440214174|gb|AGB93313.1| CG30499, isoform B [Drosophila melanogaster]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 63/81 (77%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKVKWLRENYP L+IEVDGGVGP TI  CA+AGAN IVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D+ Q I  L+  V  YL
Sbjct: 200 VGASDQSQVIKELRDVVHSYL 220

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195581258|ref|XP_002080451.1| GD10239 [Drosophila simulans] gi|194192460|gb|EDX06036.1| GD10239 [Drosophila simulans]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 63/81 (77%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKVKWLRENYP L+IEVDGGVGP TI  CA+AGAN IVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D+ Q I  L+  V  YL
Sbjct: 200 VGASDQSQVIKELRDVVHSYL 220

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332161|ref|XP_002032767.1| GM20778 [Drosophila sechellia] gi|194124737|gb|EDW46780.1| GM20778 [Drosophila sechellia]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 63/81 (77%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKVKWLRENYP L+IEVDGGVGP TI  CA+AGAN IVSGTAV
Sbjct: 140 MTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAV 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D+ Q I  L+  V  YL
Sbjct: 200 VGASDQSQVIKELRDVVHSYL 220

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741201|gb|ADD19348.1| d-ribulose-5-phosphate 3-epimerase [Glossina morsitans morsitans]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 67/80 (83%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM+DMMPKV+WLRE+YP LNIEVDGGVGP TI+ CAKAGAN IVSGTA+
Sbjct: 142 MTVEPGFGGQAFMRDMMPKVQWLREHYPNLNIEVDGGVGPETIEYCAKAGANMIVSGTAL 201

Query: 61  INCPDRIQAISTLKSSVQKY 80
           I   ++ + I+ L+S VQ Y
Sbjct: 202 IEANNQKEVINLLRSMVQTY 221

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
FB|FBgn0050499	221	CG30499 [Drosophila melanogast	0.987	0.366	0.716	7.3e-27
ZFIN|ZDB-GENE-030131-6837	228	rpe "ribulose-5-phosphate-3-ep	0.963	0.346	0.645	1.1e-23
MGI|MGI:1913896	228	Rpe "ribulose-5-phosphate-3-ep	0.914	0.328	0.653	1.8e-23
UNIPROTKB|D3ZZU9	228	Rpe "Ribulose-phosphate 3-epim	0.914	0.328	0.653	1.8e-23
UNIPROTKB|F1NT24	243	RPE "Ribulose-phosphate 3-epim	0.914	0.308	0.653	2.3e-23
UNIPROTKB|G5E6S3	187	RPE "Uncharacterized protein"	0.914	0.401	0.653	3.8e-23
UNIPROTKB|F6V404	228	RPE "Ribulose-phosphate 3-epim	0.914	0.328	0.653	3.8e-23
UNIPROTKB|F1SSS3	187	LOC100737311 "Uncharacterized	0.914	0.401	0.653	3.8e-23
UNIPROTKB|F1SSS5	190	LOC100737311 "Uncharacterized	0.914	0.394	0.653	3.8e-23
UNIPROTKB|C9J6A7	159	RPE "Ribulose-phosphate 3-epim	0.914	0.471	0.64	4.8e-23

FB|FBgn0050499 CG30499 [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 58/81 (71%), Positives = 63/81 (77%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQ FM DMMPKVKWLRENYP L+IEVDGGVGP TI  CA+AGAN IVSGTAV
Sbjct:   140 MTVEPGFGGQSFMADMMPKVKWLRENYPNLDIEVDGGVGPKTIHCCAEAGANMIVSGTAV 199

Query:    61 INCPDRIQAISTLKSSVQKYL 81
             +   D+ Q I  L+  V  YL
Sbjct:   200 VGASDQSQVIKELRDVVHSYL 220

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

ZFIN|ZDB-GENE-030131-6837 rpe "ribulose-5-phosphate-3-epimerase" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 51/79 (64%), Positives = 64/79 (81%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP++I  CA+AGAN IVSG+AV
Sbjct:   141 MTVEPGFGGQKFMEDMMPKVSWLRGQFPSLDIEVDGGVGPDSIHRCAEAGANMIVSGSAV 200

Query:    61 INCPDRIQAISTLKSSVQK 79
             ++  D    I+ LK+ V +
Sbjct:   201 VSSDDPRSVIALLKNVVME 219

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1913896 Rpe "ribulose-5-phosphate-3-epimerase" [Mus musculus (taxid:10090)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +PTL+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct:   141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAI 200

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   201 MRSDDPRAVINLLRN 215

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=ISO

GO:0006098 "pentose-phosphate shunt" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046872 "metal ion binding" evidence=ISO

GO:0048029 "monosaccharide binding" evidence=ISO

UNIPROTKB|D3ZZU9 Rpe "Ribulose-phosphate 3-epimerase" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +PTL+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct:   141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAI 200

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   201 MRSDDPRAVINLLRN 215

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NT24 RPE "Ribulose-phosphate 3-epimerase" [Gallus gallus (taxid:9031)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 49/75 (65%), Positives = 63/75 (84%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV+WLR  +P+L+IEVDGGVGP+TI +CA+AGAN IVSG+A+
Sbjct:   156 MTVEPGFGGQKFMEDMMPKVQWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAI 215

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   216 MKSADPRSVINLLRN 230

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G5E6S3 RPE "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+TI +CA+AGAN IVSG+A+
Sbjct:   100 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAI 159

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   160 MRSEDPRSVINLLRN 174

GO:0046872 "metal ion binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|F6V404 RPE "Ribulose-phosphate 3-epimerase" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+TI +CA+AGAN IVSG+A+
Sbjct:   141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAI 200

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   201 MRSDDPRSVINLLRN 215

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

UNIPROTKB|F1SSS3 LOC100737311 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+TI +CA+AGAN IVSG+A+
Sbjct:   100 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAI 159

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   160 MRSEDPRSVINLLRN 174

GO:0046872 "metal ion binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|F1SSS5 LOC100737311 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/75 (65%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+TI +CA+AGAN IVSG+A+
Sbjct:   103 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAI 162

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   163 MRSEDPRSVINLLRN 177

GO:0046872 "metal ion binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|C9J6A7 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 48/75 (64%), Positives = 62/75 (82%)

Query:     1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
             MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct:    73 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 132

Query:    61 INCPDRIQAISTLKS 75
             +   D    I+ L++
Sbjct:   133 MRSEDPRSVINLLRN 147

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE42	RPE1_ORYSJ	5, ., 1, ., 3, ., 1	0.5897	0.9512	0.3421	yes	N/A
Q8VEE0	RPE_MOUSE	5, ., 1, ., 3, ., 1	0.6533	0.9146	0.3289	yes	N/A
P46969	RPE_YEAST	5, ., 1, ., 3, ., 1	0.6172	0.9878	0.3403	yes	N/A
O14105	RPE_SCHPO	5, ., 1, ., 3, ., 1	0.5696	0.9634	0.3464	yes	N/A
Q6FL81	RPE_CANGA	5, ., 1, ., 3, ., 1	0.6049	0.9878	0.3292	yes	N/A
Q96AT9	RPE_HUMAN	5, ., 1, ., 3, ., 1	0.64	0.9146	0.3289	yes	N/A
Q5R5Y2	RPE_PONAB	5, ., 1, ., 3, ., 1	0.64	0.9146	0.3289	yes	N/A
Q755M2	RPE_ASHGO	5, ., 1, ., 3, ., 1	0.6049	0.9878	0.3389	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
PTZ00170	228	PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epime	2e-43
PLN02334	229	PLN02334, PLN02334, ribulose-phosphate 3-epimerase	7e-39
cd00429	211	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RP	9e-36
PRK05581	220	PRK05581, PRK05581, ribulose-phosphate 3-epimerase	6e-32
COG0036	220	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Car	1e-30
pfam00834	201	pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 ep	6e-24
TIGR01163	210	TIGR01163, rpe, ribulose-phosphate 3-epimerase	1e-23
PRK08745	223	PRK08745, PRK08745, ribulose-phosphate 3-epimerase	3e-15
PRK08883	220	PRK08883, PRK08883, ribulose-phosphate 3-epimerase	1e-14
PRK09722	229	PRK09722, PRK09722, allulose-6-phosphate 3-epimera	9e-10
PRK08005	210	PRK08005, PRK08005, epimerase; Validated	2e-06
pfam01729	169	pfam01729, QRPTase_C, Quinolinate phosphoribosyl t	0.001

>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional

 Score =  139 bits (353), Expect = 2e-43
 Identities = 52/82 (63%), Positives = 62/82 (75%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMMPKV+ LR+ YP LNI+VDGG+   TID  A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSI 204

Query: 61  INCPDRIQAISTLKSSVQKYLS 82
               DR QAI  L+ SVQK+LS
Sbjct: 205 FKAKDRKQAIELLRESVQKHLS 226

Length = 228

>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase

 Score =  127 bits (322), Expect = 7e-39
 Identities = 49/80 (61%), Positives = 63/80 (78%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           M+VEPGFGGQ F+  MM KV+ LR+ YP L+IEVDGGVGP+TID+ A+AGAN IV+G+AV
Sbjct: 146 MSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAV 205

Query: 61  INCPDRIQAISTLKSSVQKY 80
              PD  + IS L++SV+K 
Sbjct: 206 FGAPDYAEVISGLRASVEKA 225

Length = 229

>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)

 Score =  119 bits (301), Expect = 9e-36
 Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 4/78 (5%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQKF+ +++ K++ LRE  P     L IEVDGG+   TI   A+AGA+ +V+
Sbjct: 134 MSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVA 193

Query: 57  GTAVINCPDRIQAISTLK 74
           G+A+    D  +AI  L+
Sbjct: 194 GSALFGSDDYAEAIKELR 211

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. Length = 211

>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated

 Score =  109 bits (276), Expect = 6e-32
 Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 4/80 (5%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQKF+ +++ K++ LR    E    + IEVDGG+  + I ECA+AGA+  V+
Sbjct: 138 MSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197

Query: 57  GTAVINCPDRIQAISTLKSS 76
           G+AV   PD  +AI +L++ 
Sbjct: 198 GSAVFGAPDYKEAIDSLRAE 217

Length = 220

>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

 Score =  106 bits (267), Expect = 1e-30
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 1   MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQKF+ +++ K+      + E    L IEVDGG+   TI + A AGA+  V+
Sbjct: 138 MSVNPGFGGQKFIPEVLEKIRELRAMIDERLDIL-IEVDGGINLETIKQLAAAGADVFVA 196

Query: 57  GTAVINCPDRIQAISTLKSSVQK 79
           G+A+    D    I  L+  + K
Sbjct: 197 GSALFGADDYKATIRELRGELLK 219

Length = 220

>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family

 Score = 88.9 bits (221), Expect = 6e-24
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+  ++PK++ +R    E      IEVDGGV  + I + A+AGA+ +V+
Sbjct: 134 MSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVA 193

Query: 57  GTAVINCP 64
           G+AV   P
Sbjct: 194 GSAVFGAP 201

This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. Length = 201

>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase

 Score = 88.1 bits (219), Expect = 1e-23
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 6/79 (7%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
           M+V PGFGGQKF+ D + K++ +R+         L IEVDGGV  +   E A+AGA+ +V
Sbjct: 133 MSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSIL-IEVDGGVNDDNARELAEAGADILV 191

Query: 56  SGTAVINCPDRIQAISTLK 74
           +G+A+    D  + I +L+
Sbjct: 192 AGSAIFGADDYKEVIRSLR 210

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants [Energy metabolism, Pentose phosphate pathway]. Length = 210

>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional

 Score = 66.6 bits (162), Expect = 3e-15
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLN----IEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+   + K++ +R+    L     +E+DGGV  + I   A AGA+  V+
Sbjct: 139 MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVA 198

Query: 57  GTAVINCPDRIQAISTLKSSV 77
           G+A+ N PD  Q I+ ++++V
Sbjct: 199 GSAIFNAPDYAQVIAQMRAAV 219

Length = 223

>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional

 Score = 65.0 bits (158), Expect = 1e-14
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPT----LNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+   + K++ +R+        + +E+DGGV  + I E A+AGA+  V+
Sbjct: 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVA 194

Query: 57  GTAVINCPDRIQAISTLKSSVQK 79
           G+A+   PD    I  +++ + K
Sbjct: 195 GSAIFGQPDYKAVIDEMRAELAK 217

Length = 220

>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional

 Score = 51.9 bits (125), Expect = 9e-10
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
           MTV+PGF GQ F+ +M+ K+  L+          L IEVDG     T ++  +AGA+  +
Sbjct: 137 MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYL-IEVDGSCNQKTYEKLMEAGADVFI 195

Query: 56  SGT 58
            GT
Sbjct: 196 VGT 198

Length = 229

>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 31/65 (47%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MT EP   GQ+F+  M  KV   RE++P      DGG+        A AGA  +V G A+
Sbjct: 135 MTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRAL 194

Query: 61  INCPD 65
               +
Sbjct: 195 FTTAN 199

Length = 210

>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase, C-terminal domain

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 14  QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA 59
           +++   V+ L E    + +EV GG+  + + E AK G + I  G  
Sbjct: 112 EEVREAVEELDERAGRVLLEVSGGITLDNVLEYAKTGVDVISVGAL 157

Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyzes the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	99.93
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	99.92
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	99.92
PRK08005	210	epimerase; Validated	99.91
PRK14057	254	epimerase; Provisional	99.91
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	99.91
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	99.9
KOG3111|consensus	224		99.9
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	99.89
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	99.86
PLN02334	229	ribulose-phosphate 3-epimerase	99.84
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.73
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.7
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	99.7
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.68
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	99.68
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	99.64
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.57
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.56
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.54
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.52
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	99.5
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	99.47
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.39
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	99.37
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.35
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	99.31
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	99.29
PRK07695	201	transcriptional regulator TenI; Provisional	99.24
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.24
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	99.2
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	99.18
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	99.16
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	99.15
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.12
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.12
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	99.1
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.07
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.06
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.01
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.97
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	98.95
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.93
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	98.84
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	98.83
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	98.82
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.81
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.78
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	98.73
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	98.73
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	98.71
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	98.65
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	98.62
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	98.62
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.58
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	98.56
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	98.56
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	98.54
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	98.53
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	98.51
PRK08999	312	hypothetical protein; Provisional	98.49
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	98.48
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	98.47
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.47
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.45
TIGR01334	277	modD putative molybdenum utilization protein ModD.	98.43
PRK00208	250	thiG thiazole synthase; Reviewed	98.42
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	98.41
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.4
PRK04302	223	triosephosphate isomerase; Provisional	98.4
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.36
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	98.34
PRK06806	281	fructose-bisphosphate aldolase; Provisional	98.33
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	98.33
PRK06096	284	molybdenum transport protein ModD; Provisional	98.33
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	98.33
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.33
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	98.32
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.3
PLN02591	250	tryptophan synthase	98.24
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.23
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	98.22
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	98.18
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	98.18
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	98.18
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	98.17
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.16
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	98.16
PRK07315	293	fructose-bisphosphate aldolase; Provisional	98.13
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.12
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	98.1
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.08
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.06
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	98.03
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	98.01
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	97.99
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	97.92
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	97.92
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	97.9
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	97.89
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.88
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	97.86
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	97.82
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	97.82
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	97.81
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	97.77
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	97.74
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.71
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.71
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.71
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.69
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	97.67
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	97.66
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	97.65
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.61
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	97.6
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	97.59
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.59
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	97.58
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	97.58
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.58
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.57
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.54
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.54
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.53
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	97.53
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.51
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	97.49
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.49
PRK08227	264	autoinducer 2 aldolase; Validated	97.48
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.48
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.47
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	97.46
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.44
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.43
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	97.39
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.39
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	97.38
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	97.37
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.36
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.34
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.34
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.33
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	97.32
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	97.32
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.31
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	97.31
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.28
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.27
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	97.27
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	97.25
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	97.25
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.19
PRK06801	286	hypothetical protein; Provisional	97.17
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	97.16
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	97.15
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.13
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.11
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	97.09
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	97.09
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.07
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	97.07
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	97.06
KOG1606|consensus	296		97.06
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.05
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	97.05
PRK14565	237	triosephosphate isomerase; Provisional	97.04
PRK06852	304	aldolase; Validated	97.03
PLN02826	409	dihydroorotate dehydrogenase	97.02
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	96.9
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	96.88
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	96.88
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	96.84
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	96.83
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	96.82
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	96.82
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	96.8
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	96.8
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	96.78
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	96.78
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.76
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	96.76
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	96.73
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	96.73
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	96.65
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	96.62
PLN02411	391	12-oxophytodienoate reductase	96.6
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	96.59
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	96.58
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.56
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.55
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	96.52
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	96.52
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.51
KOG0538|consensus	363		96.51
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.5
PRK13523	337	NADPH dehydrogenase NamA; Provisional	96.5
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	96.44
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.42
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	96.41
PRK10605	362	N-ethylmaleimide reductase; Provisional	96.38
PRK14024	241	phosphoribosyl isomerase A; Provisional	96.37
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	96.28
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	96.27
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	96.23
KOG2335|consensus	358		96.19
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	96.19
PLN02535	364	glycolate oxidase	96.17
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	96.16
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	96.16
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.15
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.14
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	96.14
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	96.12
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	96.12
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.11
PRK14567	253	triosephosphate isomerase; Provisional	96.09
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	96.06
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	96.06
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	96.05
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	96.04
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	96.04
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	96.03
PLN02617	538	imidazole glycerol phosphate synthase hisHF	95.99
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	95.94
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	95.92
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	95.82
KOG3055|consensus	263		95.82
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	95.81
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	95.76
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	95.75
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	95.73
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	95.72
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.72
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	95.64
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	95.64
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	95.62
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	95.62
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	95.6
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	95.57
PLN02460	338	indole-3-glycerol-phosphate synthase	95.51
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	95.51
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	95.49
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	95.46
PRK11572	248	copper homeostasis protein CutC; Provisional	95.46
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	95.44
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	95.24
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	95.17
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	95.11
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	95.11
PLN02979	366	glycolate oxidase	95.1
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	95.08
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	95.08
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	95.07
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	94.93
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	94.91
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	94.84
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	94.77
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	94.76
PRK00042	250	tpiA triosephosphate isomerase; Provisional	94.67
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	94.67
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	94.56
PLN02429	315	triosephosphate isomerase	94.54
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	94.52
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	94.48
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	94.43
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	94.42
PRK09250	348	fructose-bisphosphate aldolase; Provisional	94.4
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	94.39
KOG1799|consensus	471		94.22
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	94.17
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	94.17
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	94.13
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	94.02
PRK15492	260	triosephosphate isomerase; Provisional	93.96
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	93.6
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	93.53
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.51
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	93.46
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	93.37
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	93.23
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	93.21
PTZ00333	255	triosephosphate isomerase; Provisional	92.94
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	92.93
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	92.82
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	92.64
PF00121	244	TIM: Triosephosphate isomerase; InterPro: IPR00065	92.5
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	92.39
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	92.37
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	92.27
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	91.95
PLN02274	505	inosine-5'-monophosphate dehydrogenase	91.92
PLN02363	256	phosphoribosylanthranilate isomerase	91.9
KOG2550|consensus	503		91.5
PF13277	253	YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.	91.45
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	91.4
cd01570	327	NAPRTase_A Nicotinate phosphoribosyltransferase (N	91.23
COG3142	241	CutC Uncharacterized protein involved in copper re	91.22
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	91.09
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	91.03
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	90.98
PRK08185	283	hypothetical protein; Provisional	90.86
KOG2550|consensus	503		90.72
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	90.52
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	90.45
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	90.32
KOG0538|consensus	363		90.31
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	90.28
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	90.16
COG1411	229	Uncharacterized protein related to proFAR isomeras	89.93
KOG1436|consensus	398		89.91
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	89.85
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	89.82
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	89.73
PLN02979	366	glycolate oxidase	89.69
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	89.59
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	89.47
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	89.42
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	89.36
COG1692	266	Calcineurin-like phosphoesterase [General function	89.3
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	89.25
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	89.24
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	89.14
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	88.79
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	88.11
PRK11475	207	DNA-binding transcriptional activator BglJ; Provis	88.08
cd01715	168	ETF_alpha The electron transfer flavoprotein (ETF)	87.88
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	87.77
PLN02535	364	glycolate oxidase	87.75
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	87.72
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	86.79
PRK12484	443	nicotinate phosphoribosyltransferase; Provisional	86.69
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	86.18
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	86.01
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	85.95
COG1908	132	FrhD Coenzyme F420-reducing hydrogenase, delta sub	85.94
TIGR01513	443	NAPRTase_put putative nicotinate phosphoribosyltra	85.9
cd08209	391	RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent	85.84
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	85.82
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	85.8
PLN02617	538	imidazole glycerol phosphate synthase hisHF	85.66
PRK09243	464	nicotinate phosphoribosyltransferase; Validated	85.54
PF02579	94	Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofac	85.47
KOG4201|consensus	289		85.34
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	85.34
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	85.33
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	85.12
TIGR00282	266	metallophosphoesterase, MG_246/BB_0505 family. A m	85.01
PF02662	124	FlpD: Methyl-viologen-reducing hydrogenase, delta	84.98
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	84.93
COG0325	228	Predicted enzyme with a TIM-barrel fold [General f	84.82
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	84.82
PRK01362	214	putative translaldolase; Provisional	84.5
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	84.46
TIGR02663	119	nifX nitrogen fixation protein NifX. Members of th	84.28
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	84.22
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	84.18
PF07071	218	DUF1341: Protein of unknown function (DUF1341); In	84.13
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	84.11
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	84.08
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	83.8
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	83.53
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	83.25
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	83.19
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	83.14
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	82.92
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	82.92
KOG4175|consensus	268		82.69
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	82.42
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	82.41
PLN02885	545	nicotinate phosphoribosyltransferase	82.22
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	82.16
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	82.14
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	81.07
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	81.07
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	80.86
TIGR01334	277	modD putative molybdenum utilization protein ModD.	80.72
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	80.56
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	80.47
PF00072	112	Response_reg: Response regulator receiver domain;	80.39
PRK06464	795	phosphoenolpyruvate synthase; Validated	80.33
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	80.31
PRK12656	222	fructose-6-phosphate aldolase; Reviewed	80.19

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.2e-26  Score=155.10  Aligned_cols=79  Identities=41%  Similarity=0.683  Sum_probs=74.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCC---CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYP---TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~---~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      |||||||+||+|+|++++||+++|++..   ++.|+|||||+.+|++++.++|||.+|+||++|+.+|+++.+++++..+
T Consensus       138 MsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~  217 (220)
T COG0036         138 MSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL  217 (220)
T ss_pred             EeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHh
Confidence            8999999999999999999999999865   6789999999999999999999999999999999999999999998876


Q ss_pred             HH
Q psy11601         78 QK   79 (82)
Q Consensus        78 ~~   79 (82)
                      .+
T Consensus       218 ~~  219 (220)
T COG0036         218 LK  219 (220)
T ss_pred             hc
Confidence            53

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=99.92  E-value=1.6e-25  Score=151.66  Aligned_cols=79  Identities=38%  Similarity=0.720  Sum_probs=73.4

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |||+|||+||+|.|+.++||++++++    .+++.|+|||||+.+|++.+.++|||.+|+||+||+++|++++++++++.
T Consensus       139 MtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~  218 (223)
T PRK08745        139 MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA  218 (223)
T ss_pred             EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence            89999999999999999999999886    33578999999999999999999999999999999988999999999987


Q ss_pred             HHH
Q psy11601         77 VQK   79 (82)
Q Consensus        77 ~~~   79 (82)
                      +..
T Consensus       219 ~~~  221 (223)
T PRK08745        219 VAA  221 (223)
T ss_pred             HHh
Confidence            653

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=99.92  E-value=6.7e-25  Score=149.06  Aligned_cols=77  Identities=19%  Similarity=0.303  Sum_probs=71.6

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |||+|||+||+|.+.+++||++++++    .+++.|+|||||+.+|++.+.++|||++|+||++|+.+|+++.+++|+..
T Consensus       147 MtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~  226 (228)
T PRK08091        147 LTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSS  226 (228)
T ss_pred             EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHh
Confidence            89999999999999999999999875    34578999999999999999999999999999999988999999999876


Q ss_pred             H
Q psy11601         77 V   77 (82)
Q Consensus        77 ~   77 (82)
                      +
T Consensus       227 ~  227 (228)
T PRK08091        227 L  227 (228)
T ss_pred             h
Confidence            5

>PRK08005 epimerase; Validated

Probab=99.91  E-value=7.3e-25  Score=147.38  Aligned_cols=74  Identities=32%  Similarity=0.443  Sum_probs=69.3

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      |||+|||+||+|.|++++||++++++.+...|+|||||+.+|++.+.++|||.+|+||+||+.+|+++.++.|-
T Consensus       135 MsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~  208 (210)
T PRK08005        135 MTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT  208 (210)
T ss_pred             EEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence            89999999999999999999999998776789999999999999999999999999999999888888877663

>PRK14057 epimerase; Provisional

Probab=99.91  E-value=1.3e-24  Score=149.38  Aligned_cols=78  Identities=19%  Similarity=0.325  Sum_probs=72.1

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |||+|||+||+|.|++++||++++++    .+++.|+|||||+.+|++++.++|||++|+||++|+.+|+++.+++|++.
T Consensus       161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~  240 (254)
T PRK14057        161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAM  240 (254)
T ss_pred             EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHH
Confidence            89999999999999999999998875    23588999999999999999999999999999999988999999999876


Q ss_pred             HH
Q psy11601         77 VQ   78 (82)
Q Consensus        77 ~~   78 (82)
                      +.
T Consensus       241 ~~  242 (254)
T PRK14057        241 FK  242 (254)
T ss_pred             Hh
Confidence            54

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=99.91  E-value=9.4e-25  Score=147.60  Aligned_cols=80  Identities=36%  Similarity=0.684  Sum_probs=74.6

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |||+|||+||+|.|..++||+++++..+    +++|+|||||+++|++.+.++|||++|+||+||+++|++++++++++.
T Consensus       135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~  214 (220)
T PRK08883        135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAE  214 (220)
T ss_pred             EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence            8999999999999999999999988642    589999999999999999999999999999999999999999999998


Q ss_pred             HHHh
Q psy11601         77 VQKY   80 (82)
Q Consensus        77 ~~~~   80 (82)
                      +++.
T Consensus       215 ~~~~  218 (220)
T PRK08883        215 LAKV  218 (220)
T ss_pred             HHhc
Confidence            8753

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=99.90  E-value=5.5e-24  Score=144.70  Aligned_cols=79  Identities=33%  Similarity=0.524  Sum_probs=71.7

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEec-cccC-CCCHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSGT-AVIN-CPDRIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs-~i~~-~~d~~~~~~~l~   74 (82)
                      |||+|||+||+|.|++++||++++++.    +++.|+|||||+.+|+.++.++|||.+|+|| +||+ .+|+++.++.++
T Consensus       137 MsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~  216 (229)
T PRK09722        137 MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT  216 (229)
T ss_pred             EEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence            899999999999999999999999752    3577999999999999999999999999995 5998 578999999999


Q ss_pred             HHHHH
Q psy11601         75 SSVQK   79 (82)
Q Consensus        75 ~~~~~   79 (82)
                      +.+++
T Consensus       217 ~~~~~  221 (229)
T PRK09722        217 AQIEA  221 (229)
T ss_pred             HHHHH
Confidence            87764

>KOG3111|consensus

Probab=99.90  E-value=4.6e-24  Score=141.61  Aligned_cols=80  Identities=69%  Similarity=1.131  Sum_probs=77.2

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |||+|||+||+|.++.+.|++.+|+.+|++.|++|||++++|+..++++|||.+|+||++|++.|+.+.++.|++...+.
T Consensus       141 MtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a  220 (224)
T KOG3111|consen  141 MTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKA  220 (224)
T ss_pred             EEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999987654

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=99.89  E-value=5.9e-23  Score=139.23  Aligned_cols=82  Identities=63%  Similarity=0.960  Sum_probs=77.7

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+|+||++||+|.++.+++++++++..+++.|.|||||+++|++.+.++|||++|+||+||+++||+++++++++.+++.
T Consensus       145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~~  224 (228)
T PTZ00170        145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQKH  224 (228)
T ss_pred             hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998777899999999999999999999999999999999999999999999998876


Q ss_pred             hC
Q psy11601         81 LS   82 (82)
Q Consensus        81 ~~   82 (82)
                      .|
T Consensus       225 ~~  226 (228)
T PTZ00170        225 LS  226 (228)
T ss_pred             hh
Confidence            54

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=99.86  E-value=1.8e-22  Score=134.99  Aligned_cols=64  Identities=42%  Similarity=0.776  Sum_probs=54.5

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |||+|||+||+|.|++++||++++++    ++++.|+|||||+.+|++.+.++|||.+|+||++|+++
T Consensus       134 MsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~~  201 (201)
T PF00834_consen  134 MSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKAD  201 (201)
T ss_dssp             ESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS-
T ss_pred             EEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCC
Confidence            89999999999999999999999875    34699999999999999999999999999999999864

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PLN02334 ribulose-phosphate 3-epimerase

Probab=99.84  E-value=9.4e-21  Score=128.03  Aligned_cols=79  Identities=62%  Similarity=1.017  Sum_probs=75.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      |+|+||+++|+|.+..+++++++++..+++||+|||||+++|+.++.++|||++|+||+||+++||++++++|++.+++
T Consensus       146 ~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~  224 (229)
T PLN02334        146 MSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEK  224 (229)
T ss_pred             EEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999876789999999999999999999999999999999999999999999988775

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.73  E-value=1.5e-17  Score=110.11  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=70.3

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +++|||.+|.|.+..+++++++++..+.++++++|||+.+|+.++.++|+|++++||+||+++|+++.++.|++.
T Consensus       131 ~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~  205 (206)
T TIGR03128       131 GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL  205 (206)
T ss_pred             EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence            578999999999999999999999877788999999999999999999999999999999999999999998865

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.70  E-value=3.1e-17  Score=109.55  Aligned_cols=78  Identities=22%  Similarity=0.428  Sum_probs=70.5

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCC-CcEEEEcCCCccc--HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPNT--IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~-~~i~~dGGI~~~n--i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      |+++||++||.|.+..+++|+++++..+. +.+ +||||+.++  +..+.++|||++|+||+||+++||.+.++.|++.+
T Consensus       134 m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~  212 (215)
T PRK13813        134 LAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEI  212 (215)
T ss_pred             HHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999999887543 456 999999985  99999999999999999999999999999999887


Q ss_pred             HH
Q psy11601         78 QK   79 (82)
Q Consensus        78 ~~   79 (82)
                      ++
T Consensus       213 ~~  214 (215)
T PRK13813        213 RG  214 (215)
T ss_pred             hc
Confidence            54

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=99.70  E-value=3.6e-17  Score=108.90  Aligned_cols=77  Identities=45%  Similarity=0.846  Sum_probs=69.2

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |+++||..||.|.+..+++++++++..+    +++++++|||+++|+.++.++|+|++++||+||+++||++++++|++.
T Consensus       138 ~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~  217 (220)
T PRK05581        138 MSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE  217 (220)
T ss_pred             EEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence            5678999999999999999999887633    256889999999999999999999999999999999999999999876


Q ss_pred             H
Q psy11601         77 V   77 (82)
Q Consensus        77 ~   77 (82)
                      +
T Consensus       218 ~  218 (220)
T PRK05581        218 L  218 (220)
T ss_pred             h
Confidence            5

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.68  E-value=1.1e-16  Score=107.88  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=72.7

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+++||++||.|.|+.+++|+++++.  ++.+.|+|||++++++.+.+.|||.+|+|++||+++||.++++++++.++++
T Consensus       137 ~a~~~~~~G~v~s~~~~~~ir~~~~~--~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~~~  214 (216)
T PRK13306        137 RSRDAQLAGVAWGEKDLNKVKKLSDM--GFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIAKY  214 (216)
T ss_pred             hhhhhhhcCCCCCHHHHHHHHHHhcC--CCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999999874  4679999999999999999999999999999999999999999999998764

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=99.68  E-value=7.8e-17  Score=106.37  Aligned_cols=74  Identities=42%  Similarity=0.732  Sum_probs=66.3

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      |+++||+.|+.|.+..+++++++++..    +++|++++|||+++|++++.+.|+|++++||+||+++||++++++++
T Consensus       133 ~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~~  210 (210)
T TIGR01163       133 MSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR  210 (210)
T ss_pred             EEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence            467899999999999999999888753    34789999999999999999999999999999999999999988763

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=99.64  E-value=2.9e-16  Score=103.50  Aligned_cols=74  Identities=47%  Similarity=0.783  Sum_probs=66.9

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      |+++||.+|+.|.+..++++++++++.+    ++|++++|||+++|+.++.++|+|++++||++|+.+||.+++++++
T Consensus       134 ~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~~~~~~~~  211 (211)
T cd00429         134 MSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR  211 (211)
T ss_pred             EEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence            4678999999999999999999887643    5899999999999999999999999999999999999999988763

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.57  E-value=8.3e-15  Score=100.04  Aligned_cols=61  Identities=25%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |+|+||++ ++|.++..++++++++..++.+|+++||| ++++++.+.++|||++++||++|+
T Consensus       158 msv~~~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~  219 (244)
T PRK13125        158 YGLRPATG-VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE  219 (244)
T ss_pred             EEeCCCCC-CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            68999995 58999999999999998766789999999 999999999999999999999986

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.56  E-value=1.1e-14  Score=95.90  Aligned_cols=70  Identities=24%  Similarity=0.350  Sum_probs=61.4

Q ss_pred             ccCCCCCCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601          2 TVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         2 ~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .++|++.++.+ .+...++++++++. +++|++++|||+++|+.++.++|||++++||+||+++||++.+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~  201 (202)
T cd04726         131 ILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAARE  201 (202)
T ss_pred             EEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence            34688877777 57788999998886 479999999999999999999999999999999999999888765

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.54  E-value=2.3e-14  Score=103.88  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=64.0

Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          3 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         3 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ++||  +|   +..+++|+++++..++++|+++|||+.+|++++.++|||++|+||+||+++||++++++|++.++.
T Consensus       309 vdp~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i~~  380 (391)
T PRK13307        309 IDEE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP  380 (391)
T ss_pred             cCCC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhhcc
Confidence            6676  33   457789999998767899999999999999999999999999999999999999999999988754

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.52  E-value=1.1e-13  Score=91.44  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             cCCCCCCCCCCcc-hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          3 VEPGFGGQKFMQD-MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         3 v~pG~~gq~~~~~-~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.|+...+...+. .+++++++++..+++||+++|||+.+|+.++.++|++++++||+||+++||.+.++++++.+++
T Consensus       133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~  210 (212)
T PRK00043        133 IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA  210 (212)
T ss_pred             ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence            4455544444433 4899999988875699999999999999999999999999999999999999999999987764

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=99.50  E-value=1.3e-13  Score=89.24  Aligned_cols=73  Identities=19%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             CccCCCCCCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      |.+.|+..++.+ .+..+++++++++. .++|+.++|||+.+|+.++.++|++++++||++|..+|+.+.+++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~  195 (196)
T cd00564         122 GPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             CCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence            346788888777 88899999999887 47999999999999999999999999999999999899999888875

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=99.47  E-value=1.7e-13  Score=99.74  Aligned_cols=78  Identities=23%  Similarity=0.390  Sum_probs=70.9

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .+.|||.+|.+.+..++.++++++.. ++||+++|||+.+|+.+++++|||++++||+||+++||++.++++++.++++
T Consensus       136 ~~~pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~  213 (430)
T PRK07028        136 NVHVGIDQQMLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG  213 (430)
T ss_pred             EEEeccchhhcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence            46799999999888889999998865 5999999999999999999999999999999999999999999999987754

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.39  E-value=1.6e-12  Score=89.63  Aligned_cols=76  Identities=21%  Similarity=0.340  Sum_probs=63.3

Q ss_pred             CccCCCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC---C--CCHHHHHHH
Q psy11601          1 MTVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN---C--PDRIQAIST   72 (82)
Q Consensus         1 m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~---~--~d~~~~~~~   72 (82)
                      |+++ |+.||+  |.++..++++++++.. +.||+++|||+ ++++..+.+.|||++|+||++++   .  .++.+.++.
T Consensus       170 vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~~~~~~~~~  247 (256)
T TIGR00262       170 VSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNTPEKMLQA  247 (256)
T ss_pred             EECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccCCHHHHHHH
Confidence            5776 999996  9999999999999985 57999999997 99999999999999999999987   1  255555555


Q ss_pred             HHHHHH
Q psy11601         73 LKSSVQ   78 (82)
Q Consensus        73 l~~~~~   78 (82)
                      +.+.++
T Consensus       248 i~~~~~  253 (256)
T TIGR00262       248 LEEFVQ  253 (256)
T ss_pred             HHHHHH
Confidence            555443

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=99.37  E-value=2.5e-12  Score=86.78  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=62.9

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      .+..++.++++++.. ++|++++|||+++|+.++.++||++|++.|+||.++|++.+++++++.++++.
T Consensus       143 ~~~G~~~l~~~~~~~-~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~~  210 (211)
T COG0352         143 PPLGLEGLREIRELV-NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDEK  210 (211)
T ss_pred             CccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhhc
Confidence            577888999888886 49999999999999999999999999999999999999999999999988754

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.35  E-value=2.4e-12  Score=87.97  Aligned_cols=60  Identities=25%  Similarity=0.382  Sum_probs=55.6

Q ss_pred             CccCCCCCCCC-CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          1 MTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         1 m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |+++|++++|. |.+...++++++++.. ++||+++|||+ .++++.+.++ ||++|+||++|+
T Consensus       159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~  220 (242)
T cd04724         159 VSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK  220 (242)
T ss_pred             EeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence            68999999998 8999999999999974 79999999999 5599999999 999999999986

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.31  E-value=8.6e-12  Score=84.49  Aligned_cols=67  Identities=18%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ..|..++.++++++.. ++|++++|||+.+|+.++.++||+++++.|+||+++||.+++++|++.++.
T Consensus       148 ~~p~gl~~l~~~~~~~-~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~  214 (221)
T PRK06512        148 AHPRNLSLAEWWAEMI-EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE  214 (221)
T ss_pred             CCCCChHHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence            3456788888888775 699999999999999999999999999999999999999999999998875

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.2e-11  Score=83.52  Aligned_cols=76  Identities=25%  Similarity=0.412  Sum_probs=62.7

Q ss_pred             cCCCCCCC----CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601          3 VEPGFGGQ----KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus         3 v~pG~~gq----~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +|-|.+-|    .|..+.+++++++.++  .+++.|.|||++++++.+...|++.|++|++|.++.||.++++++++.++
T Consensus       136 ~H~g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~  213 (217)
T COG0269         136 LHRGRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID  213 (217)
T ss_pred             EEecccHhhcCCCccHHHHHHHHHhhcc--CceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence            45555544    4444566666666664  38999999999999999999999999999999999999999999999987


Q ss_pred             Hh
Q psy11601         79 KY   80 (82)
Q Consensus        79 ~~   80 (82)
                      ++
T Consensus       214 ~~  215 (217)
T COG0269         214 KI  215 (217)
T ss_pred             cc
Confidence            54

>PRK07695 transcriptional regulator TenI; Provisional

Probab=99.24  E-value=7.1e-11  Score=78.30  Aligned_cols=66  Identities=12%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      .+..++.++++++.. ++|+.+.|||+++|+.++.++|+++++++|+|+.++||.+.++++++.+++
T Consensus       134 ~~~g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~  199 (201)
T PRK07695        134 PARGLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK  199 (201)
T ss_pred             CCCCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence            344677888887765 599999999999999999999999999999999999999999999998875

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.24  E-value=3.6e-11  Score=88.16  Aligned_cols=70  Identities=9%  Similarity=0.090  Sum_probs=61.8

Q ss_pred             CCCcchHHHHHHHHHhCC--------CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         11 KFMQDMMPKVKWLRENYP--------TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~--------~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ...|..+++++++++...        ++|++++|||+++|+.++.++||+++++.|+|+.++||++++++|++.+.+.
T Consensus       338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~  415 (437)
T PRK12290        338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAEN  415 (437)
T ss_pred             CCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhc
Confidence            356778888888776542        6999999999999999999999999999999999999999999999988653

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=99.20  E-value=6.5e-11  Score=79.48  Aligned_cols=64  Identities=20%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             chHHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC----CCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC----PDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~----~d~~~~~~~l~~~~~   78 (82)
                      -..+.++++++..+ ++|++++|||+++|+.+|.++|++.++++|+||++    +|+++.++++++.++
T Consensus       136 ~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~  204 (206)
T PRK09140        136 LGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR  204 (206)
T ss_pred             CCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence            35677888888775 69999999999999999999999999999999986    678888888877665

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.18  E-value=1.3e-10  Score=78.14  Aligned_cols=66  Identities=14%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +..++.++++.+...++|+++.|||+.+|+.++.++|++++++.|+||+++||.++++++++.+..
T Consensus       143 ~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~  208 (211)
T PRK03512        143 PQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEV  208 (211)
T ss_pred             CCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhh
Confidence            346677777766544689999999999999999999999999999999999999999999987754

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=99.16  E-value=1.4e-10  Score=76.14  Aligned_cols=59  Identities=19%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      ..++.++++++..+++|+++.|||+++|+.++.++|+++++++|+||+++||.+.+++|
T Consensus       138 ~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l  196 (196)
T TIGR00693       138 AGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL  196 (196)
T ss_pred             CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence            46788888887655689999999999999999999999999999999999999887753

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=99.15  E-value=1.6e-10  Score=80.11  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             CCCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccc---cCCCCHHHHHHHHHH
Q psy11601          4 EPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAV---INCPDRIQAISTLKS   75 (82)
Q Consensus         4 ~pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i---~~~~d~~~~~~~l~~   75 (82)
                      +||+.|++  +.++..+.++++|+.. +.|+++.+||+ +++++.+.+.|||++|+||++   +...+.++.++++++
T Consensus       176 ~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~  252 (263)
T CHL00200        176 TTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSPEKGLDQLSE  252 (263)
T ss_pred             CCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcChhhHHHHHHH
Confidence            79999995  3444555566777764 78999999999 999999999999999999998   544344433333333

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.12  E-value=2.2e-10  Score=80.13  Aligned_cols=65  Identities=14%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ..++.|+++++.. ++|++  +.||| +++|+..+.++|||++++||+||+++||.+.+++|.+.+..|
T Consensus       184 ~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~  251 (287)
T TIGR00343       184 VPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY  251 (287)
T ss_pred             CCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence            4677788888765 68998  99999 999999999999999999999999999999999999887654

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.12  E-value=3.1e-10  Score=79.55  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=59.9

Q ss_pred             CcchHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         13 MQDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ....++.|+++++.. ++|++  +.||| +++++..+.++|||++++||+||+++||.+.+++|.+.+..|
T Consensus       188 ~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~  257 (293)
T PRK04180        188 LQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY  257 (293)
T ss_pred             cCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence            345678888888875 58998  99999 999999999999999999999999999999999999988765

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.10  E-value=3.5e-10  Score=81.11  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +-.++.++++++.. ++|++++|||+++|+.++.++|+++|+++|+|++++||.++++++.+.+.+.
T Consensus       280 ~~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~  345 (347)
T PRK02615        280 PAGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE  345 (347)
T ss_pred             CCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence            55678888888765 5999999999999999999999999999999999999999999999888653

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.07  E-value=6.7e-10  Score=77.63  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             cchHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         14 QDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +..++.|+++++.. ++|++  +.||| +++|+..+.++||+++++||+||+++||.+.+++|++.++++
T Consensus       180 ~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~  248 (283)
T cd04727         180 QAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY  248 (283)
T ss_pred             CCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence            34667788888875 58997  99999 999999999999999999999999999999999999988754

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.06  E-value=5e-10  Score=75.62  Aligned_cols=64  Identities=20%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~   78 (82)
                      ...+.++.++...|++|++++|||+.+|+.+|+++|++.+++||.++..      +++.+.++++.+.++
T Consensus       141 ~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~  210 (213)
T PRK06552        141 LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR  210 (213)
T ss_pred             CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence            3467788888888889999999999999999999999999999999975      456677777766554

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=99.01  E-value=1.7e-09  Score=80.19  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=61.5

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCC---EEEEeccccCCCCHHHHHHHHHHHHHHhhC
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGAN---WIVSGTAVINCPDRIQAISTLKSSVQKYLS   82 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad---~vv~gs~i~~~~d~~~~~~~l~~~~~~~~~   82 (82)
                      .+-.++.++++.+.. ++|+++.|||+++|+.++.++|++   +++++|+|++++||.+.++++++.+.+.++
T Consensus       429 ~~~g~~~~~~~~~~~-~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~~  500 (502)
T PLN02898        429 KTIGLDGLREVCEAS-KLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEALS  500 (502)
T ss_pred             CCCCHHHHHHHHHcC-CCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            345678888887764 699999999999999999999999   999999999999999999999999887653

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.97  E-value=2e-09  Score=73.96  Aligned_cols=64  Identities=16%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-------cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-------PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-------~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .++.++++.+.. ++|++++|||+       .+|++++.++||+++++|+.||+++||.+.+++|++.+.+.
T Consensus       180 ~~~~l~~~~~~~-~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~~  250 (258)
T TIGR01949       180 DIDSFRDVVKGC-PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHEN  250 (258)
T ss_pred             CHHHHHHHHHhC-CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhCC
Confidence            466777777654 58999999999       78899999999999999999999999999999999988654

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=98.95  E-value=3.7e-09  Score=81.87  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHhCC--CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYP--TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~--~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      -.++.++++++...  ++|++++|||+++|++++.++||+++++.|+|++++||.++++++++.++..
T Consensus       150 lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~~  217 (755)
T PRK09517        150 LGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQPT  217 (755)
T ss_pred             CCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHHh
Confidence            46788888887763  3999999999999999999999999999999999999999999999988754

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.93  E-value=2.2e-09  Score=71.05  Aligned_cols=48  Identities=17%  Similarity=0.097  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++.++++++..|++|++++|||+++|+.++.++|+++++++|+||..
T Consensus       139 G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~  186 (187)
T PRK07455        139 GADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK  186 (187)
T ss_pred             CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence            477888888887789999999999999999999999999999999964

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=98.84  E-value=1.5e-08  Score=67.78  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      +..++.+.+. ++.++++++.. .+.|+.+.|||+. +++.++.++|||++++||+|++.+||.+.+++|
T Consensus       149 ~~~~~~~~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~  217 (217)
T cd00331         149 NRDLKTFEVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL  217 (217)
T ss_pred             CCCccccCcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence            3445555444 48888888765 3689999999965 999999999999999999999999999887753

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=98.83  E-value=1.7e-08  Score=68.10  Aligned_cols=61  Identities=18%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      .++.++++.+.. ++|+++.||++.       +|++++.++||+++++|+.||+++||.+.++++++.+
T Consensus       167 ~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~  234 (235)
T cd00958         167 DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV  234 (235)
T ss_pred             CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence            567778877765 588999999966       6799999999999999999999999999999998764

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=98.82  E-value=1.3e-08  Score=69.03  Aligned_cols=69  Identities=14%  Similarity=0.323  Sum_probs=59.2

Q ss_pred             CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .-+.+..++.+++....  ++++.|.|||+++......+.++|.+|+|++|++++||.++++++++.++++
T Consensus       146 ~v~s~~e~~~ir~~~~~--~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~~  214 (218)
T PRK13305        146 QQWGEADLARMKALSDI--GLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDAI  214 (218)
T ss_pred             CCCCHHHHHHHHHHhCC--CCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHHh
Confidence            34556667777766543  5789999999999999999999999999999999999999999999998764

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.81  E-value=9.5e-09  Score=67.76  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+...+-++++++..+++|+++.|||+++|+.++.++|++.++++|.+|.
T Consensus       127 ~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~  176 (190)
T cd00452         127 EAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK  176 (190)
T ss_pred             cccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence            34456677888877777999999999999999999999999999999993

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.78  E-value=3.1e-08  Score=68.49  Aligned_cols=63  Identities=17%  Similarity=0.261  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCccc-------HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~n-------i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .+.++++.+.. ++||.+.|||+.+|       +.++.++||+++++|+.||+.+||.+.+++|++.+.+.
T Consensus       185 ~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~  254 (267)
T PRK07226        185 PESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEG  254 (267)
T ss_pred             HHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCC
Confidence            45566666543 58999999999887       77888999999999999999999999999999987653

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=98.73  E-value=2.3e-08  Score=65.49  Aligned_cols=54  Identities=30%  Similarity=0.454  Sum_probs=43.4

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      .|.|+.++++.+ ++...+++.+++.||||++|+.+|.+.|+|.+++|+....++
T Consensus       108 ~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~  162 (169)
T PF01729_consen  108 NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLTHSAP  162 (169)
T ss_dssp             S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred             CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence            456777777554 556677899999999999999999999999999999877643

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.73  E-value=2.2e-08  Score=70.43  Aligned_cols=54  Identities=26%  Similarity=0.507  Sum_probs=44.1

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      +|.++.++++.+ +++..+++++++.||||++|+.+|+++|+|++++|+.++.++
T Consensus       224 n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~  278 (288)
T PRK07428        224 NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPITRSP  278 (288)
T ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence            466666666554 343357899999999999999999999999999999998643

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.71  E-value=2.2e-08  Score=69.55  Aligned_cols=51  Identities=20%  Similarity=0.347  Sum_probs=39.8

Q ss_pred             CCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         12 FMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      |.|+.++++.+ +++. +++|++++||||++|+.+|+++|+|++++|+.++..
T Consensus       210 ~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s~  261 (269)
T cd01568         210 MSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVISTGALTHSA  261 (269)
T ss_pred             CCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence            55555555444 3333 578999999999999999999999999997777664

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=98.65  E-value=1.6e-07  Score=64.93  Aligned_cols=65  Identities=23%  Similarity=0.387  Sum_probs=53.3

Q ss_pred             CCCCcchHHHHHHHHHhCCC-CcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         10 QKFMQDMMPKVKWLRENYPT-LNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~-~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.|.++ ++...++.+..|+ .++.+.||| +++++..+.++|+|+|++||+|.+++||.+.+++|..
T Consensus       192 ~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~~  258 (260)
T PRK00278        192 KTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELLG  258 (260)
T ss_pred             ccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHhc
Confidence            344443 7777887776654 477888888 7999999999999999999999999999999888753

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=98.62  E-value=2.4e-07  Score=63.01  Aligned_cols=58  Identities=22%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             HHHHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         21 KWLRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.+|+..++-.+.+.+||+++           +..+..+.|+|++|+|++||+++||.++++++++.+.
T Consensus       160 ~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~  228 (230)
T PRK00230        160 AAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA  228 (230)
T ss_pred             HHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence            333443333346888999988           8999999999999999999999999999999998875

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=98.62  E-value=1.1e-07  Score=64.04  Aligned_cols=48  Identities=15%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      .+-|+.++...|++++++.|||+++|+.+|+++|+..+++||.||..+
T Consensus       136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~  183 (204)
T TIGR01182       136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD  183 (204)
T ss_pred             HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence            456788888889999999999999999999999999999999999744

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.58  E-value=9.8e-08  Score=66.80  Aligned_cols=49  Identities=16%  Similarity=0.286  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         16 MMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        16 ~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ..+.++++.+.. +++|+++.|||+++|+++|+++|+|++++|+..+.++
T Consensus       219 ~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~  268 (277)
T PRK05742        219 SLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMTKDVK  268 (277)
T ss_pred             CHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence            334444444432 5799999999999999999999999999999887654

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=98.56  E-value=1.7e-07  Score=61.27  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=39.9

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccc
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV   60 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i   60 (82)
                      .+-.++.++++++.. ++|+++.|||+++|+.++.++|++++++.|+|
T Consensus       134 ~~~g~~~l~~~~~~~-~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI  180 (180)
T PF02581_consen  134 PPLGLDGLREIARAS-PIPVYALGGITPENIPELREAGADGVAVISAI  180 (180)
T ss_dssp             TTCHHHHHHHHHHHT-SSCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred             cccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence            567889999998886 59999999999999999999999999999876

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.56  E-value=1.4e-07  Score=65.67  Aligned_cols=49  Identities=16%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         15 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        15 ~~~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      -..+.++++.+..+ ++|++++||||++|+.+|+++|+|++++|+..+.+
T Consensus       211 ~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a  260 (268)
T cd01572         211 MSPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTHSA  260 (268)
T ss_pred             cCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecCC
Confidence            34566666665442 58999999999999999999999999999988853

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.54  E-value=1.4e-07  Score=66.35  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +|.|+.+++.-+ +++..+++.+++.||||++|+.+|+++|+|.+++|+....+
T Consensus       227 nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~sa  280 (289)
T PRK07896        227 NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALTHSV  280 (289)
T ss_pred             CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence            466666666544 34446789999999999999999999999999999988754

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=98.53  E-value=1.7e-07  Score=65.33  Aligned_cols=51  Identities=24%  Similarity=0.370  Sum_probs=38.8

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecccc
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +|.|..++++.+ +++..+++|+++.|||+++|+.+|.++|+|+|++++..+
T Consensus       211 ~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai~~  262 (272)
T cd01573         211 KFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVTSAPYY  262 (272)
T ss_pred             CCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEEChhhc
Confidence            355666666555 444446799999999999999999999999995555433

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=98.51  E-value=4e-07  Score=61.04  Aligned_cols=62  Identities=15%  Similarity=0.197  Sum_probs=49.8

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .+..++.++++++.. ++|+.+.||| +++++.++.+.|||++++||+|++.+++.+   ++.+.++
T Consensus       158 ~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~---~~~~~~~  220 (221)
T PRK01130        158 EEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITK---WFVDALK  220 (221)
T ss_pred             CCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHH---HHHHHhh
Confidence            444577888888876 6999999999 699999999999999999999997655544   4444443

>PRK08999 hypothetical protein; Provisional

Probab=98.49  E-value=3e-07  Score=64.27  Aligned_cols=47  Identities=21%  Similarity=0.225  Sum_probs=41.9

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecccc
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +-.++.++++++.. ++|+++.|||+.+|+.++.++|++++++.|+||
T Consensus       266 ~~g~~~~~~~~~~~-~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~  312 (312)
T PRK08999        266 PLGWEGFAALIAGV-PLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW  312 (312)
T ss_pred             CCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            45678888887765 699999999999999999999999999999886

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.48  E-value=2.8e-07  Score=64.54  Aligned_cols=53  Identities=26%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             CCCcchHHHHHH-HHHhC--CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKW-LRENY--PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~--~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +|.|+.++++.+ +++..  +++.+++.|||+++|+.+|+++|+|.+++|+..+.+
T Consensus       210 n~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~sa  265 (278)
T PRK08385        210 NMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTHSV  265 (278)
T ss_pred             CCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence            466777777666 44433  578999999999999999999999999999988854

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.47  E-value=2.4e-07  Score=64.73  Aligned_cols=53  Identities=26%  Similarity=0.452  Sum_probs=42.3

Q ss_pred             CCCcchHHHHHHHHH-hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~-~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .|.++.++++.++.+ ..|++.+.+.|||+++|+.+|++.|+|.+++|+.++.+
T Consensus       210 n~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa  263 (273)
T PRK05848        210 NMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLIHQA  263 (273)
T ss_pred             CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence            356666666555432 24578899999999999999999999999999998854

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.47  E-value=2.4e-07  Score=64.83  Aligned_cols=48  Identities=13%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..+.++++++.. ++++++++|||+++|+++|.++|+|++++|+..+.+
T Consensus       218 ~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa  266 (277)
T PRK08072        218 TPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHSV  266 (277)
T ss_pred             CHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence            345555555542 458899999999999999999999999999988753

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.45  E-value=1.8e-06  Score=59.58  Aligned_cols=62  Identities=21%  Similarity=0.382  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      -+.|+.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||....+.|+..++.
T Consensus       164 ~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a  226 (248)
T cd04728         164 PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA  226 (248)
T ss_pred             HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence            4445566665 468999999995 8899999999999999999999999999999999988764

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=98.43  E-value=4.1e-07  Score=63.71  Aligned_cols=56  Identities=18%  Similarity=0.310  Sum_probs=44.1

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC-CCH
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC-PDR   66 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~-~d~   66 (82)
                      +|.|+.+.+..+ +++..+++.+++.|||+++|+.+|++.|+|.+++|+..+.. -|+
T Consensus       216 n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a~~~Di  273 (277)
T TIGR01334       216 KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYAAPCDI  273 (277)
T ss_pred             CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceecCccce
Confidence            466666666554 44445788999999999999999999999999999987653 354

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.42  E-value=2.3e-06  Score=59.12  Aligned_cols=61  Identities=21%  Similarity=0.382  Sum_probs=52.7

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||....++|.+.++.
T Consensus       165 ~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a  226 (250)
T PRK00208        165 YNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA  226 (250)
T ss_pred             HHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence            335666665 368999999995 8999999999999999999999999999999999988763

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=98.41  E-value=3.7e-07  Score=61.12  Aligned_cols=48  Identities=31%  Similarity=0.433  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      .+-++.++...|++++++.|||+++|+.+|+++|+..+++||.+|..+
T Consensus       136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~  183 (196)
T PF01081_consen  136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD  183 (196)
T ss_dssp             HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred             HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence            566888888888999999999999999999999999999999999754

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.40  E-value=8.9e-07  Score=59.86  Aligned_cols=48  Identities=15%  Similarity=0.272  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      .+.++.++...|++++++.|||+++|+.+|.++|+-.++.||.+|..+
T Consensus       143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~  190 (212)
T PRK05718        143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD  190 (212)
T ss_pred             HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcc
Confidence            567788888888999999999999999999999966666678888644

>PRK04302 triosephosphate isomerase; Provisional

Probab=98.40  E-value=1.8e-06  Score=58.26  Aligned_cols=65  Identities=14%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             CCcchHHHHHH-HHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKW-LRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      -.|+.++.+.+ +++...++|+.+-||| +++.+..+.+.|+|++++||++.+.+|+.+.+++|.+.
T Consensus       155 ~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~  221 (223)
T PRK04302        155 AKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSP  221 (223)
T ss_pred             CCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhh
Confidence            34555555433 5554446899999999 66777788889999999999999999999998887654

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.36  E-value=1.5e-06  Score=58.39  Aligned_cols=47  Identities=15%  Similarity=0.043  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .+-|+.++...|+++++..|||+.+|+.+|+++|+...+.||.++..
T Consensus       132 ~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~~  178 (201)
T PRK06015        132 AAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPK  178 (201)
T ss_pred             HHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCCc
Confidence            35688888888999999999999999999999999988888999864

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=98.34  E-value=1.7e-06  Score=58.08  Aligned_cols=44  Identities=18%  Similarity=0.376  Sum_probs=38.7

Q ss_pred             cEEEEcCCCcc---cH--------HHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         31 NIEVDGGVGPN---TI--------DECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        31 ~i~~dGGI~~~---ni--------~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      .+.+.+||+++   ..        +.+.++|+|.+|+|++||+++||.+++++++
T Consensus       159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~  213 (213)
T TIGR01740       159 FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRIR  213 (213)
T ss_pred             ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence            47899999987   33        8899999999999999999999999888764

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=98.33  E-value=1.9e-06  Score=60.37  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=50.9

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      .+-.++.|+++++.. ++|+++.|  ||+.+|+.++.++|++.+.++|+++.  ++.++++++.
T Consensus       185 ~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~--a~~~a~~~~~  245 (281)
T PRK06806        185 PNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN--SVITAVNNLV  245 (281)
T ss_pred             CccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH--HHHHHHHHHH
Confidence            345788899998876 69999999  99999999999999999999999996  5676666654

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=98.33  E-value=1.6e-06  Score=58.14  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      ..++.++++++.. ++|+.+.||| +++++.++.+.|||++.+||+|++.+|+..
T Consensus       164 ~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~  217 (219)
T cd04729         164 PDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHITG  217 (219)
T ss_pred             CCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence            3567788888776 6999999999 699999999999999999999999888753

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=98.33  E-value=9.6e-07  Score=62.07  Aligned_cols=52  Identities=17%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             CCCcchHHHHHHHHH-hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         11 KFMQDMMPKVKWLRE-NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~-~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +|.|+.+++..++.+ ..+++.+++.||||++|+.+|++.|+|.+++|+..+.
T Consensus       217 n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal~~a  269 (284)
T PRK06096        217 KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAPYYA  269 (284)
T ss_pred             CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECccccC
Confidence            567777777666433 3567899999999999999999999999988877443

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=98.33  E-value=8.9e-07  Score=58.73  Aligned_cols=51  Identities=18%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCC
Q psy11601          8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCP   64 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~   64 (82)
                      .|+.+.-+.   +++++   .++|+.++|||+++|+.++.+.+ ++++.++|++..++
T Consensus       137 ~g~~~~~~~---l~~~~---~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~p  188 (203)
T cd00405         137 TGKTFDWSL---LRGLA---SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSP  188 (203)
T ss_pred             CcceEChHH---hhccc---cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCC
Confidence            355554444   44444   35899999999999999999999 99999999999763

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=98.33  E-value=9.2e-07  Score=61.52  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=34.2

Q ss_pred             HHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         18 PKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        18 ~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +.++++.+.. ..+|++++|||+++|+.+|+++|+|++++ |+++.
T Consensus       210 e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isv-gait~  254 (265)
T TIGR00078       210 EEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISS-GALTH  254 (265)
T ss_pred             HHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEe-CHHHc
Confidence            4455544432 24899999999999999999999999999 44544

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=98.32  E-value=2.3e-06  Score=57.43  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ...++.++++++.. ++|+++.|||+. +|+.+++..|+|+|++||+++...
T Consensus       142 ~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~  192 (236)
T cd04730         142 IGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE  192 (236)
T ss_pred             cCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence            35677788888765 589999999997 999999999999999999998743

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.30  E-value=2.3e-06  Score=58.31  Aligned_cols=47  Identities=26%  Similarity=0.319  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc--ccHHHHHHcCCCEEEEeccccCC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~--~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..-|+.++...|+++++..|||++  +|+.+|+++|+..+.+||.+|..
T Consensus       146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~  194 (222)
T PRK07114        146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK  194 (222)
T ss_pred             HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence            556777777788999999999999  89999999999999999999863

>PLN02591 tryptophan synthase

Probab=98.24  E-value=7.1e-06  Score=56.72  Aligned_cols=57  Identities=21%  Similarity=0.339  Sum_probs=45.9

Q ss_pred             CCCCCC--CCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          5 PGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         5 pG~~gq--~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .|..|.  .+.++..+.++++++. .+.|+++=-||+ +++++.+.+.|||++++||++.+
T Consensus       164 ~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk  223 (250)
T PLN02591        164 TGVTGARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK  223 (250)
T ss_pred             CCCcCCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence            566665  3334444448888886 479999999999 99999999999999999999865

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.23  E-value=7.3e-06  Score=57.03  Aligned_cols=61  Identities=23%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~   67 (82)
                      |+.|....|..++.++++++.. ++||.+.||| +.+++.+++.+|||.+.++++++..+++.
T Consensus       209 g~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~  270 (296)
T cd04740         209 GLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAF  270 (296)
T ss_pred             eecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHH
Confidence            3455555666778888888875 6999999999 78999999999999999999987655543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.22  E-value=2.1e-06  Score=60.51  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +|.|+.+++..++.+  .++.+++.||||++|+++|++.|+|.+++|+..+.+
T Consensus       225 nmspe~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tGVD~Is~galthsa  275 (290)
T PRK06559        225 NMSLEQIEQAITLIA--GRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSA  275 (290)
T ss_pred             CCCHHHHHHHHHHhc--CceEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence            456666666555333  368899999999999999999999999999987753

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.18  E-value=2.9e-06  Score=59.60  Aligned_cols=50  Identities=18%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      |.|+.+++.-++.+  ...++++.||||++|+++|++.|+|.+++|+..+.+
T Consensus       223 ~s~e~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galthsa  272 (281)
T PRK06106        223 MTPDTLREAVAIVA--GRAITEASGRITPETAPAIAASGVDLISVGWLTHSA  272 (281)
T ss_pred             CCHHHHHHHHHHhC--CCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence            44544444433322  357899999999999999999999999999987753

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.18  E-value=3.1e-06  Score=59.82  Aligned_cols=52  Identities=27%  Similarity=0.389  Sum_probs=41.1

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      +|.|+.+++..++.+  .++.+++.||||++|+.+|++.|+|.+++|+....++
T Consensus       233 nmspe~l~~av~~~~--~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa~  284 (294)
T PRK06978        233 NFTLDMMREAVRVTA--GRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDVR  284 (294)
T ss_pred             CCCHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence            456666655444332  3678999999999999999999999999999887654

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=98.18  E-value=3.2e-06  Score=59.27  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=43.9

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      .|.|+.+++.-++....+++.+++.|||+++|+++|+..|+|.|++|+.....+
T Consensus       216 Nm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~  269 (280)
T COG0157         216 NMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAP  269 (280)
T ss_pred             CCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCCc
Confidence            466777766665544556789999999999999999999999999998777644

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.17  E-value=3.1e-06  Score=59.47  Aligned_cols=52  Identities=23%  Similarity=0.249  Sum_probs=40.7

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      +|.|+.+++..++.+  ....+++.||||++|+.+|++.|+|.+++|+..+..+
T Consensus       221 n~s~e~l~~av~~~~--~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~~  272 (281)
T PRK06543        221 NFSLDDLREGVELVD--GRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSVR  272 (281)
T ss_pred             CCCHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence            456666655554332  3468999999999999999999999999999877643

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.16  E-value=1.2e-05  Score=56.24  Aligned_cols=62  Identities=21%  Similarity=0.180  Sum_probs=50.5

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      +.|....|..++.++++++.. ++||.+.||| +.+.+.+++.+|||.+.++++++..+++...
T Consensus       213 ~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~  275 (301)
T PRK07259        213 LSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPK  275 (301)
T ss_pred             cCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHH
Confidence            445555666788899988876 6999999999 7999999999999999999998865554433

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=98.16  E-value=5.5e-06  Score=58.88  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHh-CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..+.++++.+. ....++++.||||++|+.+|++.|+|.+++|+..+.+
T Consensus       248 ~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa  296 (308)
T PLN02716        248 DVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSV  296 (308)
T ss_pred             CHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence            55666665443 2357899999999999999999999999999987753

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=98.13  E-value=6.1e-06  Score=58.15  Aligned_cols=61  Identities=20%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +-.++.|+++++..+++|+++.||  |+.+|+..+.++|++.|-++|.++.  ++.++++++.+.
T Consensus       187 ~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~~  249 (293)
T PRK07315        187 GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI--AFANATRKFARD  249 (293)
T ss_pred             cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHHHh
Confidence            467888999988765699999999  9999999999999999999999985  666666665543

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.12  E-value=1.1e-05  Score=56.26  Aligned_cols=64  Identities=22%  Similarity=0.080  Sum_probs=48.5

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHH-HHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI-STLKSSV   77 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~-~~l~~~~   77 (82)
                      .|-.++.++++++.. ++||.+.||| +.+.+.+++.+|||.+.+|++++..+++...+ +.|.+.+
T Consensus       219 ~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~  284 (300)
T TIGR01037       219 KPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFL  284 (300)
T ss_pred             hHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHH
Confidence            344567788888765 5999999999 79999999999999999999988766544333 3344433

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=98.10  E-value=5.3e-06  Score=58.67  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=39.1

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +|.|+.++++-++.  .+++.+++.|||+++|+.+|++.|+|.+++|+..-.+
T Consensus       236 n~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galthsa  286 (296)
T PRK09016        236 NFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAETGVDFISVGALTKHV  286 (296)
T ss_pred             CCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence            35555555544422  2468999999999999999999999999999866543

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.08  E-value=4.6e-06  Score=57.70  Aligned_cols=62  Identities=26%  Similarity=0.254  Sum_probs=49.6

Q ss_pred             CCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-CCHHHHH
Q psy11601          9 GQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-PDRIQAI   70 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-~d~~~~~   70 (82)
                      |....+..++.++++++..+ ++||.+.|||+ .+++.+++.+|||.+.++++++.. +++...+
T Consensus       222 g~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i  286 (289)
T cd02810         222 GAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKI  286 (289)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHH
Confidence            33334556778888888765 79999999997 799999999999999999998875 6655443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.06  E-value=1.5e-05  Score=53.90  Aligned_cols=51  Identities=24%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ...++-++++++.. ++|+.+.|||+ .+++..+..+|++++++||+++..+.
T Consensus       179 g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~  230 (241)
T PRK13585        179 GVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF  230 (241)
T ss_pred             CCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence            34567788888775 59999999999 89999999999999999999998543

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.03  E-value=2.5e-05  Score=54.17  Aligned_cols=50  Identities=22%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.+...+.++++++.. +.|+++-+|| +++++.++.+. ||++++||++.+
T Consensus       183 ~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~  233 (258)
T PRK13111        183 ADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK  233 (258)
T ss_pred             CCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence            45556666888899876 7999999999 77999999975 999999999875

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=98.01  E-value=1.1e-05  Score=57.09  Aligned_cols=51  Identities=25%  Similarity=0.511  Sum_probs=41.5

Q ss_pred             CcchHHHHHHHHH-h-CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         13 MQDMMPKVKWLRE-N-YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        13 ~~~~~~ki~~~~~-~-~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++.++++++..+ . .+++.|++.||||++|+.++.+.|+|.+.+|+.+...
T Consensus       227 ~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~  279 (302)
T cd01571         227 FRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKA  279 (302)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCC
Confidence            3445677776443 3 3678899999999999999999999999999998864

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=97.99  E-value=1.4e-05  Score=53.33  Aligned_cols=57  Identities=12%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHc-CCCEEEEeccccCCCCHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKA-GANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +..++.++++++.. ++||.+.||| +.+.+.++.+. |+|.+.+|++++..+++-..+.
T Consensus       169 ~~~~~~~~~i~~~~-~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~  227 (231)
T cd02801         169 PADWDYIAEIKEAV-SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIK  227 (231)
T ss_pred             CCCHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhh
Confidence            55677788888764 6999999999 79999999998 8999999999998776655443

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=97.92  E-value=5.8e-05  Score=50.49  Aligned_cols=62  Identities=16%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ....++-++++++.  .+|+.+.|+| +++.+.+.+++||+.+|+||+|..   |....++|.+.+++
T Consensus       130 ~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ai~~  192 (192)
T PF04131_consen  130 DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVDAIKK  192 (192)
T ss_dssp             SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHHHCHH
T ss_pred             CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHHHHhC
Confidence            45578889998886  5899999999 789999999999999999999995   55666777766653

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd02812 PcrB_like PcrB_like proteins

Probab=97.92  E-value=3.6e-05  Score=52.42  Aligned_cols=54  Identities=26%  Similarity=0.303  Sum_probs=41.3

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +.|..-.+   +.++++++...+.|+.+-||| +++.+++++++|||.+|+||+++..
T Consensus       156 ~SG~~~~~---e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~  210 (219)
T cd02812         156 YSGAYGPP---EVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED  210 (219)
T ss_pred             CCCCcCCH---HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence            44555334   444555554325899999999 7899999999999999999999975

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=97.90  E-value=7.1e-05  Score=51.36  Aligned_cols=58  Identities=22%  Similarity=0.308  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      .+.++++++.....|+.+-|||+-. ++++++.+|||++|+||++..  |+.+.++++++.
T Consensus       172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~  230 (232)
T PRK04169        172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA  230 (232)
T ss_pred             HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence            4555666665422399999999887 999999999999999999984  555666666554

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=97.89  E-value=5.4e-05  Score=48.10  Aligned_cols=41  Identities=15%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEec
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGT   58 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs   58 (82)
                      ...+.++++. .++|+.++|||+. +++.++.++|||++++||
T Consensus       159 ~~~~~~~~~~-~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         159 DLLLILAKRG-SKVPVIAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             HHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence            3445555544 4799999999999 999999999999999986

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.88  E-value=2.9e-05  Score=53.88  Aligned_cols=47  Identities=17%  Similarity=0.228  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      -.+-|+++.+.. ++|+++-|||+.++++.++++||+.+++||.++..
T Consensus        64 n~~~i~~i~~~~-~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~  110 (253)
T TIGR02129        64 NDDAAKEALHAY-PGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTK  110 (253)
T ss_pred             cHHHHHHHHHhC-CCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhC
Confidence            345566666654 58999999999999999999999999999999874

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=97.86  E-value=9.5e-05  Score=51.45  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC------CHHHHHHHHHHHHHHhh
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP------DRIQAISTLKSSVQKYL   81 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~------d~~~~~~~l~~~~~~~~   81 (82)
                      |+.+..+.+   +++++..++.|+.+-||++++|+.++++. +|+++++|.+=...      | .+.+++|.+.+++.+
T Consensus       183 G~~~d~~~l---~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D-~~rV~~Fm~~v~~~~  256 (257)
T TIGR00259       183 GTEVDLELL---KLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKKDGVFNNFVD-QARVSQFVEKVAHGL  256 (257)
T ss_pred             CCCCCHHHH---HHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcccCCccCCCcC-HHHHHHHHHHHHHhc
Confidence            566555555   45555445689999999999999999997 99999999974322      3 246677776666554

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=97.82  E-value=6.2e-05  Score=52.29  Aligned_cols=63  Identities=22%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC---H--HHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD---R--IQAISTLKSSVQ   78 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d---~--~~~~~~l~~~~~   78 (82)
                      |..+++|+++|+..+ +|+.+-+|+|.+|+.++++. ||++++||++=...+   +  .+.+++|-+..+
T Consensus       186 ~~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~  253 (254)
T PF03437_consen  186 PPDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK  253 (254)
T ss_pred             CCCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence            467888899998876 99999999999999999876 999999999754221   1  356666665544

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=97.82  E-value=6.6e-05  Score=52.71  Aligned_cols=56  Identities=16%  Similarity=0.293  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCCCHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ..++.++++++.. ++||.+.|||+ .+++.++++. |+|.|.+|++++..+|+...++
T Consensus       268 ~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~  325 (327)
T cd02803         268 YFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR  325 (327)
T ss_pred             hhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence            3456667777765 68999999997 9999999998 7999999999998888765543

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=97.81  E-value=9.3e-05  Score=52.57  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             ccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCCCHHHHH
Q psy11601          2 TVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus         2 ~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      +||+....|.+. +..++.++++++.. ++||.+-||| +.+.+.++.+ .|+|++.+|++++..+.+-..+
T Consensus       167 ~vh~rt~~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~  237 (321)
T PRK10415        167 TIHGRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI  237 (321)
T ss_pred             EEecCccccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHH
Confidence            456665555553 35678888888875 6999999999 8999999997 7999999999988766544433

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=97.77  E-value=3.3e-05  Score=53.85  Aligned_cols=71  Identities=20%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccc-cCCCCHHHHHHHHHHHHHHh
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAV-INCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i-~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ..|....|-.++.++++++..+ +++|.+.|||. .+.+.+++.+||+.|-++|++ +..++   .++++.+.|+++
T Consensus       221 lSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~---~~~~i~~~L~~~  294 (295)
T PF01180_consen  221 LSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPG---VIRRINRELEEW  294 (295)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTT---HHHHHHHHHHHH
T ss_pred             cCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcH---HHHHHHHHHHhh
Confidence            5677778889999999998764 69999999995 668999999999999999998 65444   344444544443

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=97.74  E-value=3.5e-05  Score=54.75  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDRI   67 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~   67 (82)
                      |+.|....+..++.++++++..+ ++||.+.||| +.+.+.+++.+|||.+-++|+++. .+++.
T Consensus       256 G~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~  320 (327)
T cd04738         256 GLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLV  320 (327)
T ss_pred             ccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHH
Confidence            55666666777888999988753 6999999999 899999999999999999999764 35443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.71  E-value=0.00011  Score=49.69  Aligned_cols=50  Identities=16%  Similarity=0.363  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ...+.|+++++.. ++|+.+.|||+ .+.+..+..+||+.+++|+..+..++
T Consensus        63 ~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~  113 (241)
T PRK13585         63 KNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPE  113 (241)
T ss_pred             ccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChH
Confidence            4466777777765 68999999999 67899999999999999999986443

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.71  E-value=0.00023  Score=49.62  Aligned_cols=58  Identities=26%  Similarity=0.432  Sum_probs=49.2

Q ss_pred             HHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      |+.+++. +++|+.+|+||. ++.+....+.|+|++-+.|+|++++||.+.++.++..++
T Consensus       181 l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~  239 (267)
T CHL00162        181 LQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ  239 (267)
T ss_pred             HHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence            4445554 469999999995 688999999999999999999999999888888887664

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.71  E-value=0.00013  Score=49.91  Aligned_cols=52  Identities=21%  Similarity=0.367  Sum_probs=44.7

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      .+..++-++++++.. ++|+.+.|||+ .+.+..+...|++.+++|+..+..++
T Consensus        59 ~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~  111 (253)
T PRK02083         59 RDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPE  111 (253)
T ss_pred             CcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcH
Confidence            356777888887765 68999999998 89999999999999999999987554

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.69  E-value=0.00012  Score=50.17  Aligned_cols=51  Identities=25%  Similarity=0.412  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ..++-++++++.. .+|+.+.|||+ .+.+..++.+||+.+++|+..+..++.
T Consensus        61 ~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~  112 (254)
T TIGR00735        61 TMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPEL  112 (254)
T ss_pred             hhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHH
Confidence            3456667776664 58999999998 999999999999999999999975543

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=97.67  E-value=0.0001  Score=53.30  Aligned_cols=52  Identities=17%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             CCcchHHHHHH-HHHhC-CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCC
Q psy11601         12 FMQDMMPKVKW-LRENY-PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINC   63 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~-~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~   63 (82)
                      +.++.+.++++ +.+.. +++.|.|.|||+++|+.+|.++|  +|.+-+|+.|...
T Consensus       261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~  316 (352)
T PRK07188        261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI  316 (352)
T ss_pred             ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence            56777777776 44444 78999999999999999999999  7999999998864

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=97.66  E-value=0.00019  Score=49.58  Aligned_cols=60  Identities=22%  Similarity=0.403  Sum_probs=48.2

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      ..|+.+++.. ++|+.+|+||. +....+..+.|+|.+-+-|+|..+.||....+.|+...+
T Consensus       165 ~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~  225 (247)
T PF05690_consen  165 YNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE  225 (247)
T ss_dssp             HHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence            3456666655 69999999995 788999999999999999999999999999999987765

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=97.65  E-value=0.00011  Score=50.88  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=33.8

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +++.+++.|||+++|++.+...|+|.|++|+.+++.
T Consensus       238 ~~~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~  273 (281)
T cd00516         238 PRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA  273 (281)
T ss_pred             CceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence            478899999999999999999999999999999875

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.61  E-value=0.00023  Score=49.93  Aligned_cols=61  Identities=25%  Similarity=0.227  Sum_probs=51.0

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDR   66 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~   66 (82)
                      |+.|....|-.++.++++++.. +++||.+.|||. .+.+.+++.+|||.+-++|+++. .++.
T Consensus       228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~  291 (299)
T cd02940         228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTI  291 (299)
T ss_pred             cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcH
Confidence            5777777788899999998875 379999999995 67888999999999999999776 4444

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=97.60  E-value=0.00018  Score=51.07  Aligned_cols=68  Identities=13%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             CccCCCCCCCCCCcc--hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHH-HcCCCEEEEeccccCCCCHHHH
Q psy11601          1 MTVEPGFGGQKFMQD--MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECA-KAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus         1 m~v~pG~~gq~~~~~--~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      ++||++...|.+...  .++.++++++.. ++||.+-|+| +.+.+.+++ ..|+|+|.+|++++..+.+-..
T Consensus       165 i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~  236 (312)
T PRK10550        165 LVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRV  236 (312)
T ss_pred             EEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHH
Confidence            367888877777643  467788888875 6999999999 888999877 5899999999998876654443

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=97.59  E-value=0.00032  Score=50.27  Aligned_cols=67  Identities=19%  Similarity=0.300  Sum_probs=53.7

Q ss_pred             CCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601          8 GGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus         8 ~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .|+.. .|+.++.   +.+. +++|+.+|+||+ ++.+....+.|+|++-+-|+|.+++||....+.|+...+
T Consensus       231 sg~gv~~p~~i~~---~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~  299 (326)
T PRK11840        231 SGLGIQNPYTIRL---IVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE  299 (326)
T ss_pred             CCCCCCCHHHHHH---HHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence            34444 4555544   4444 469999999995 688999999999999999999999999999999987665

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.59  E-value=0.0001  Score=50.60  Aligned_cols=57  Identities=33%  Similarity=0.464  Sum_probs=42.1

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      +.+.++++...+.++.+=|||+ .+.+.+++++|||.||+|..+....+.++.++.+.
T Consensus       171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~  228 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIK  228 (230)
T ss_dssp             HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHH
T ss_pred             HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHh
Confidence            5566666655689999999996 67888999999999999999997555455554443

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=97.58  E-value=0.00029  Score=49.48  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKSSVQK   79 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~~~~~   79 (82)
                      |+.|....+..++.++++++..+ ++||.+.||| +.+.+.+++.+|||.+-++|+++. .++.   ++++.+.|++
T Consensus       219 G~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~---~~~i~~~L~~  292 (294)
T cd04741         219 GLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKV---FARIEKELED  292 (294)
T ss_pred             CcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchH---HHHHHHHHHh
Confidence            34455567778888999888764 5999999999 568888999999999999999874 4543   3334444443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.00024  Score=48.23  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=36.4

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++.+....++++++..|||+++|+++|+++|+..+-+||.++.
T Consensus       144 ~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~  186 (211)
T COG0800         144 LKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVP  186 (211)
T ss_pred             HHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccC
Confidence            3444455678999999999999999999999888888899985

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.58  E-value=0.00056  Score=48.00  Aligned_cols=47  Identities=19%  Similarity=0.219  Sum_probs=41.9

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEc--CCCcccHHHHHHcCCCEEEEecccc
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDG--GVGPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dG--GI~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .-.++.|+++++.. ++|+++.|  ||+.+|+.++.++|++.+-+++.+.
T Consensus       186 ~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~  234 (282)
T TIGR01859       186 GLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCR  234 (282)
T ss_pred             ccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHH
Confidence            34588888888876 59999999  9999999999999999999999885

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.57  E-value=0.00023  Score=48.88  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      .++-|+++.+..  .|+++.|||+ .+.++.+..+||+.+++||..+..++.-+.+
T Consensus        62 n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~  115 (241)
T PRK14114         62 NLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL  115 (241)
T ss_pred             hHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH
Confidence            344455555543  5899999999 5999999999999999999999766544444

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.54  E-value=0.00034  Score=51.08  Aligned_cols=57  Identities=21%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC--CCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY--PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~--~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |+.|....|-.++.|+++++..  +++||...|||. .+.+.+++.+|||.|-++|+++.
T Consensus       228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~  287 (420)
T PRK08318        228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ  287 (420)
T ss_pred             cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence            5667777788899999998864  379999999995 77888999999999999999775

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.54  E-value=0.00039  Score=49.44  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |+.|....|..++-++++++.. ++||.+.||| +.+.+.+++.+||+.+-++++++.
T Consensus       217 glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~  273 (334)
T PRK07565        217 VLSTPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR  273 (334)
T ss_pred             CCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence            5667777778888888888765 6999999999 478888999999999999999886

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.53  E-value=0.0005  Score=48.93  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .|+.|....|..++-++++++.. ++||.+.|||. .+.+.+++.+||+.+-++|+++.
T Consensus       214 ~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~  271 (325)
T cd04739         214 LLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR  271 (325)
T ss_pred             CCcCCccchhHHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh
Confidence            45667777788888888888765 69999999995 67888999999999999999876

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=97.53  E-value=0.0005  Score=48.23  Aligned_cols=68  Identities=10%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             CCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQK   79 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~~   79 (82)
                      +.+..++-+.++++..+ ++||.++||| +...+...+..|||.+.+|+.++..      +...+.++.+++.++.
T Consensus       209 ~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~  284 (299)
T cd02809         209 GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELER  284 (299)
T ss_pred             CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            45677888888877543 6999999999 6788888889999999999885521      2334455555555543

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.51  E-value=0.00031  Score=47.08  Aligned_cols=49  Identities=20%  Similarity=0.432  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ..++.++++++.. ++|+.+.|||+- +.+..+..+||+.+++|++++..+
T Consensus        61 ~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~  110 (233)
T PRK00748         61 VNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNP  110 (233)
T ss_pred             ccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCH
Confidence            4577777777764 589999999986 799999999999999999999754

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=97.49  E-value=0.00028  Score=49.01  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             HHHHHHHHhCCCCc--EEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLN--IEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        18 ~ki~~~~~~~~~~~--i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +-+++.+++. .+|  -.+.||| ++.......+.|+|++-+||.||+++||.+..+.+-+..
T Consensus       196 elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~  257 (296)
T COG0214         196 ELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEAT  257 (296)
T ss_pred             HHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHH
Confidence            4444544442 334  3466776 889999999999999999999999999998888876643

>cd04732 HisA HisA

Probab=97.49  E-value=0.00039  Score=46.60  Aligned_cols=49  Identities=18%  Similarity=0.426  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      .++.++++++.. ++|+.+.|||+- +.++++.++|||.+++|+..+..++
T Consensus        61 ~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~  110 (234)
T cd04732          61 NLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPE  110 (234)
T ss_pred             CHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChH
Confidence            355566666665 589999999876 8899999999999999999886443

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=97.48  E-value=0.00056  Score=47.77  Aligned_cols=61  Identities=13%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCcc------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPN------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++++.+.. ++|+++.||=+..      .+....++|+.++++|+-||+.+||.+.++.|+.++.+
T Consensus       182 ~~f~~vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~  248 (264)
T PRK08227        182 EGFERITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE  248 (264)
T ss_pred             HHHHHHHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence            4455555544 5899999998852      24456789999999999999999999999999987654

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.48  E-value=0.00038  Score=47.18  Aligned_cols=52  Identities=21%  Similarity=0.374  Sum_probs=43.2

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      +..++-++++++.. ++|+.+.|||+ .+.+..+...|++.+++|+.++..++.
T Consensus        57 ~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~  109 (243)
T cd04731          57 ETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPEL  109 (243)
T ss_pred             cccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHH
Confidence            44567778877765 58999999998 589999999999999999999975544

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.47  E-value=0.00036  Score=47.62  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ..++-|+++.+.. .+|+++.|||+ .+.++.+..+||+.+++||+++..++.
T Consensus        62 ~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l  113 (241)
T PRK14024         62 SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEW  113 (241)
T ss_pred             ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHH
Confidence            3456777777765 58999999996 688999999999999999999976554

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=97.46  E-value=0.00033  Score=48.91  Aligned_cols=46  Identities=24%  Similarity=0.381  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..+-|+++++ . +.||.+=|||+.++++.++.+||+.+++||..+..
T Consensus        72 n~~~i~~i~~-~-~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~  117 (262)
T PLN02446         72 LAAALEALRA-Y-PGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRD  117 (262)
T ss_pred             cHHHHHHHHh-C-CCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhC
Confidence            3556677777 4 48999999999999999999999999999999874

>cd04732 HisA HisA

Probab=97.44  E-value=0.0007  Score=45.35  Aligned_cols=49  Identities=18%  Similarity=0.241  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ..++.++++++.. ++|+.+.|||+. +.+..+.+.|++++++||+++..+
T Consensus       177 ~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~  226 (234)
T cd04732         177 PNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK  226 (234)
T ss_pred             CCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence            4467788888765 689999999995 569999999999999999988654

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.43  E-value=0.00038  Score=47.49  Aligned_cols=51  Identities=33%  Similarity=0.398  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ..++-|+++.+.. .+|+++.|||+ .+.++.+..+||+.+++||..+..++.
T Consensus        63 ~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~  114 (234)
T PRK13587         63 REFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDW  114 (234)
T ss_pred             chHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHH
Confidence            3456677766653 58999999995 678899999999999999998875543

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=97.39  E-value=0.00033  Score=50.45  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +++.|++.||||++|+.++.+. +|.+.+|+.++.+
T Consensus       260 ~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a  294 (343)
T PRK08662        260 EHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA  294 (343)
T ss_pred             CCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence            5688999999999999999999 9999999998863

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.39  E-value=0.0009  Score=45.34  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCC-CHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCP-DRIQ   68 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~-d~~~   68 (82)
                      .++-++++++.. ++|+.+.|||+ ++.+.++.+. |+|++++|++++... +..+
T Consensus       181 ~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~  235 (243)
T cd04731         181 DLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAE  235 (243)
T ss_pred             CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence            456677776664 68999999995 8999999887 999999999988643 4443

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=97.38  E-value=0.00075  Score=47.66  Aligned_cols=56  Identities=11%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHH-HcCCCEEEEeccccCCCCHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECA-KAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      +..++.++++++.. ++||.+.||| +.+.+.++. ..|||++.+|++++..+.+...+
T Consensus       178 ~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~  235 (319)
T TIGR00737       178 EANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQI  235 (319)
T ss_pred             chhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence            34577788888876 5999999999 478888888 68999999999988766654443

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=97.37  E-value=0.00027  Score=50.03  Aligned_cols=71  Identities=24%  Similarity=0.328  Sum_probs=53.6

Q ss_pred             CCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCH-HHHHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDR-IQAISTLKSSV   77 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~-~~~~~~l~~~~   77 (82)
                      ..|....|-.++.+.++++.. +++||.+.||| +.+.+.+++.+||+.+-++|+++. .++. .+-.++|.+.+
T Consensus       218 lSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l  292 (310)
T PRK02506        218 IGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIM  292 (310)
T ss_pred             CCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHH
Confidence            467778888999999988764 47999999999 467888999999999999999775 3332 23334444433

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.36  E-value=0.00036  Score=47.36  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=39.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCccc-HHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNT-IDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~n-i~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ..++-|+++.+.. ..|+.++|||+-.. +..+...||+.+++||..+..++.
T Consensus        60 ~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~  111 (229)
T PF00977_consen   60 SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPEL  111 (229)
T ss_dssp             HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHH
T ss_pred             hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhH
Confidence            4556677777775 48999999997654 899999999999999998876554

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.34  E-value=0.00075  Score=46.12  Aligned_cols=48  Identities=19%  Similarity=0.069  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      .+-|+++.+... .|+++.|||+- ++++.+.+.||+.+++||..+..++
T Consensus        62 ~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~  110 (232)
T PRK13586         62 EMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFN  110 (232)
T ss_pred             HHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHH
Confidence            455666666322 48999999987 8999999999999999999887553

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.34  E-value=0.00064  Score=45.60  Aligned_cols=47  Identities=19%  Similarity=0.431  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++.++++++.. ..|+.+.|||+ .+.+..+..+||+.+++|+.++..
T Consensus        60 ~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d  107 (230)
T TIGR00007        60 NLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN  107 (230)
T ss_pred             cHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence            355667766664 58999999987 599999999999999999998864

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.33  E-value=0.00076  Score=46.35  Aligned_cols=53  Identities=17%  Similarity=0.171  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      ..+-|+++.+.. ..|+++.|||+ .+.+..+...||+.+++||..+..++..+.
T Consensus        62 n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~  115 (243)
T TIGR01919        62 NEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAA  115 (243)
T ss_pred             hHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHH
Confidence            455667766665 48999999996 566778999999999999998876554433

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.32  E-value=0.00018  Score=51.55  Aligned_cols=72  Identities=19%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHHHH-HHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQAI-STLKSSVQ   78 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~-~~l~~~~~   78 (82)
                      +.|....+..++-++++++..+ ++||.+.|||. .+.+.+++.+|||.|-++|+++. .+++...+ +.|.+.++
T Consensus       266 ~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~  341 (344)
T PRK05286        266 LSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR  341 (344)
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3444444557778888887643 69999999995 67888999999999999999864 35554333 33444443

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=97.32  E-value=0.0021  Score=43.82  Aligned_cols=69  Identities=19%  Similarity=0.327  Sum_probs=53.5

Q ss_pred             CCCC--CCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          6 GFGG--QKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         6 G~~g--q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ||.+  ..-.+..++-++++++  ..+++.+-|.++ ++..+.....||+.+++||+|..   |++-.++|.+.+++
T Consensus       157 GYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR---p~~It~~F~~~ik~  228 (229)
T COG3010         157 GYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR---PEEITQWFVDAIKS  228 (229)
T ss_pred             cccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence            5555  2223446778888888  368999999985 89999999999999999999995   56666777776654

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.31  E-value=0.0011  Score=45.00  Aligned_cols=48  Identities=27%  Similarity=0.447  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..++-|+++.+.. .+|+++.|||+. +++..++.+||+.+++||..+..
T Consensus        65 ~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~  113 (233)
T cd04723          65 DNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS  113 (233)
T ss_pred             ccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence            3456667766654 489999999998 99999999999999999998865

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=97.31  E-value=0.00087  Score=45.81  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=39.5

Q ss_pred             CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601          8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .|.+-+++.++++   ++...+.|+.+-|||+ .+.++++.++|||.+|+||.++..
T Consensus       161 ~g~~v~~e~i~~v---~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d  214 (223)
T TIGR01768       161 APEPVPPELVAEV---KKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED  214 (223)
T ss_pred             CCCCcCHHHHHHH---HHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence            3445455555444   4443358999999996 578889999999999999999964

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.28  E-value=0.00081  Score=45.77  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .++-++++.+.. .+|+.+.|||+ .+.+..+...|++.+++|++.+
T Consensus        61 n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~  106 (228)
T PRK04128         61 NLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF  106 (228)
T ss_pred             hHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence            455666666653 68999999997 5788999999999999999988

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.27  E-value=0.0013  Score=45.88  Aligned_cols=72  Identities=22%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             CCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC-----CCCHHHHHHHHHHH
Q psy11601          5 PGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN-----CPDRIQAISTLKSS   76 (82)
Q Consensus         5 pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~-----~~d~~~~~~~l~~~   76 (82)
                      .|..|.+  +..+..+.++++|+.. +.|+++==||+. +.++.+. .|||++|+||++.+     .++..+.++++.+.
T Consensus       173 ~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~~~~~~~~~~~~  250 (259)
T PF00290_consen  173 MGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDDAEKFLKELKEF  250 (259)
T ss_dssp             SSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHccccHHHHHHHHHHH
Confidence            5656654  3455666788898886 789988888876 6788887 99999999999875     34566666666655


Q ss_pred             HH
Q psy11601         77 VQ   78 (82)
Q Consensus        77 ~~   78 (82)
                      .+
T Consensus       251 ~~  252 (259)
T PF00290_consen  251 VR  252 (259)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=97.27  E-value=0.00086  Score=45.12  Aligned_cols=44  Identities=27%  Similarity=0.598  Sum_probs=39.1

Q ss_pred             CCCcEEEEcCCCcc----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601         28 PTLNIEVDGGVGPN----------TIDECAKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        28 ~~~~i~~dGGI~~~----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      +++ +.+..||+++          +..++...|++.+++|+.|+.++||.+.+++
T Consensus       162 ~~~-~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~  215 (216)
T cd04725         162 PDF-LILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA  215 (216)
T ss_pred             CCC-eEEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence            344 4888999999          9999999999999999999999999988765

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.00093  Score=46.74  Aligned_cols=61  Identities=15%  Similarity=0.279  Sum_probs=49.3

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCccc-------HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~n-------i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +..+++.+..+ +|+++.||=+.++       ...+.++||.++++|+-||+.++|...++.+..++.+
T Consensus       192 e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe  259 (265)
T COG1830         192 ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE  259 (265)
T ss_pred             HHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence            55666666665 9999999988844       4456789999999999999999999988888776654

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=97.25  E-value=0.0016  Score=46.58  Aligned_cols=57  Identities=21%  Similarity=0.368  Sum_probs=45.1

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      .|..++.++++++..+++||.+-||| +++.+.++.+ |+|+|.+|++++..+..-..+
T Consensus       189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~  246 (333)
T PRK11815        189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEV  246 (333)
T ss_pred             CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHH
Confidence            34557888888887667999999999 7888888886 799999999988765544333

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.19  E-value=0.0011  Score=45.75  Aligned_cols=50  Identities=16%  Similarity=0.204  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ..++-++++.+.. .+|+.+.||| +.+.+..+...|++.+++|++++..++
T Consensus        61 ~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~  111 (258)
T PRK01033         61 PNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPD  111 (258)
T ss_pred             ccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHH
Confidence            3466677777663 6899999999 889999999999999999999886543

>PRK06801 hypothetical protein; Provisional

Probab=97.17  E-value=0.0017  Score=45.73  Aligned_cols=47  Identities=13%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      -.++.++++++.. ++|++..||  |+.+++..+.++|++.|-++|.++.
T Consensus       190 l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~  238 (286)
T PRK06801        190 LDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQ  238 (286)
T ss_pred             CCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHH
Confidence            5778888888775 589999999  9999999999999999999999874

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=97.16  E-value=0.00099  Score=47.59  Aligned_cols=63  Identities=13%  Similarity=0.198  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC---CCHH---HHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC---PDRI---QAISTLKSSVQ   78 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~---~~~~~l~~~~~   78 (82)
                      ..+.|.++++...++||.++||| +...+..++..|||.+.++++++.+   .++.   ..++.+.+.++
T Consensus       241 t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~  310 (333)
T TIGR02151       241 TAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELK  310 (333)
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            34556666653346999999999 8899999999999999999997631   2333   44444554444

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0021  Score=45.85  Aligned_cols=65  Identities=20%  Similarity=0.301  Sum_probs=53.3

Q ss_pred             ccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCCCH
Q psy11601          2 TVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCPDR   66 (82)
Q Consensus         2 ~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~d~   66 (82)
                      +||.-...|.+. |..++.|+++++..+++||.+-|+| +.+.+.++++ .|+|++.+|++.++.+.+
T Consensus       170 tVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l  237 (323)
T COG0042         170 TVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWL  237 (323)
T ss_pred             EEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcH
Confidence            566666667665 4788999999998866999999998 8899998888 579999999998876554

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.13  E-value=0.0016  Score=44.84  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHH-HcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA-KAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~-~~Gad~vv~gs~i~~~   63 (82)
                      .++.++++++.. ++|+.+.|||+- +.+.++. +.|++++++|+++.-.
T Consensus       184 d~~~i~~~~~~~-~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~  232 (258)
T PRK01033        184 DLELLKSFRNAL-KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK  232 (258)
T ss_pred             CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence            677778877764 699999999987 8999988 8999999999996433

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.11  E-value=0.0017  Score=43.74  Aligned_cols=49  Identities=22%  Similarity=0.364  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      .++-++++++.. +.|+.+.||++ .+.+..+...|++.+++|++++..++
T Consensus        62 n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~  111 (232)
T TIGR03572        62 LFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPD  111 (232)
T ss_pred             CHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHH
Confidence            445566666654 58999999998 57888999999999999999986543

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=97.09  E-value=0.00081  Score=46.73  Aligned_cols=57  Identities=25%  Similarity=0.439  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601         17 MPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus        17 ~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      +++-.++....| ++.+++.+||+ ++++..+..+|+|.|.+|+++..++||.+.+++|
T Consensus       196 ~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L  254 (254)
T PF00218_consen  196 LNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL  254 (254)
T ss_dssp             THHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred             hHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence            344455555443 47788899997 6999999999999999999999999999998875

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=97.09  E-value=0.0022  Score=45.74  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=46.7

Q ss_pred             ccCCCCC-CCCCC--------cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601          2 TVEPGFG-GQKFM--------QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus         2 ~v~pG~~-gq~~~--------~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~   67 (82)
                      +||+++. .|.+.        |..++.++++++..+++||..-|||. .+.+.++.. |+|++.+|++++..+.+-
T Consensus       159 tvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if  233 (318)
T TIGR00742       159 IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL  233 (318)
T ss_pred             EEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH
Confidence            5677664 33333        23577788888876679999999995 566666664 999999999988755443

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.07  E-value=0.002  Score=43.37  Aligned_cols=44  Identities=18%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHH-HHHcCCCEEEEeccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDE-CAKAGANWIVSGTAV   60 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~-~~~~Gad~vv~gs~i   60 (82)
                      .++-++++++.. ++|+.+.|||+ .+.+.. +...|||.+++|+++
T Consensus       185 ~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       185 DLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            467777777765 68999999998 567777 888999999999986

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=97.07  E-value=0.0022  Score=45.93  Aligned_cols=56  Identities=18%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ..++-.+++++.. ++||.+.|||+++.+.++++.| +|.|.+|+.+...+++..+++
T Consensus       272 ~~~~~~~~ik~~~-~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~  328 (338)
T cd02933         272 QPPDFLDFLRKAF-KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLK  328 (338)
T ss_pred             cchHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHh
Confidence            3444455666665 6899999999999999999987 999999999998888766553

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=97.06  E-value=0.0018  Score=47.35  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=51.0

Q ss_pred             CCCCCCCcchHHHHHHHHHhCC-----CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-CCH-HHHHHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYP-----TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-PDR-IQAISTLKSSVQ   78 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~-----~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-~d~-~~~~~~l~~~~~   78 (82)
                      +.|....|-.+..++++++...     ++||...|||. .+.+.+++.+||+.|=++|+++.. ++. .+-.+.|.+.++
T Consensus       243 lSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~  322 (385)
T PLN02495        243 YSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMK  322 (385)
T ss_pred             ccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence            4455566777777777766532     58999999995 688999999999999999998753 433 233344544433

>KOG1606|consensus

Probab=97.06  E-value=0.0029  Score=43.60  Aligned_cols=46  Identities=17%  Similarity=0.336  Sum_probs=39.1

Q ss_pred             EEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         33 EVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        33 ~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .+.||+ ++.....+.+.|+|++-+||.||.+.||......+-+...
T Consensus       213 FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvt  259 (296)
T KOG1606|consen  213 FAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVT  259 (296)
T ss_pred             ecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHH
Confidence            356665 7889999999999999999999999999988888776543

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.05  E-value=0.00076  Score=45.74  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             CCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601          8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .|..--+ .++.++++++.. +.|+.+.||| +.+.+.++.+.|++.+++|++++.
T Consensus       172 dGt~~G~-d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~  225 (229)
T PF00977_consen  172 DGTMQGP-DLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE  225 (229)
T ss_dssp             TTTSSS---HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred             cCCcCCC-CHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence            3433333 246677777665 6899999999 779999999999999999999875

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=97.05  E-value=0.0019  Score=44.31  Aligned_cols=60  Identities=22%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +|+.++.|.+.  ..++.|+++++..+++||.+-|||.- +.+.+++.+|||.|.++++++..
T Consensus       166 ~Vd~~~~g~~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       166 HVDAMYPGKPY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG  226 (231)
T ss_pred             EEeeCCCCCch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence            34545555321  46888999888764599999999965 89999999999999999988753

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK14565 triosephosphate isomerase; Provisional

Probab=97.04  E-value=0.0027  Score=43.77  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             CCCCCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHHHHHHH
Q psy11601          8 GGQKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .|+.-.|+..+++.+ +|+...+++|.-=|+++++|+.++.+. ++|++-+|++..+++++..-++.
T Consensus       167 tG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~  233 (237)
T PRK14565        167 GSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ  233 (237)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence            466677777777666 555555789999999999999999876 89999999999987777655544

>PRK06852 aldolase; Validated

Probab=97.03  E-value=0.0028  Score=45.12  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCcc------cHHHHHH-cCCCEEEEeccccCCCCH--HHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPN------TIDECAK-AGANWIVSGTAVINCPDR--IQAISTLKSSVQK   79 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~------ni~~~~~-~Gad~vv~gs~i~~~~d~--~~~~~~l~~~~~~   79 (82)
                      +.++++.+...++|+++.||=+..      .+...++ +|+.++++|+-||+.++|  .+.++.+..++.+
T Consensus       219 e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~  289 (304)
T PRK06852        219 ELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVE  289 (304)
T ss_pred             HHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence            445554444435899999998853      2344556 899999999999998887  8888888876643

>PLN02826 dihydroorotate dehydrogenase

Probab=97.02  E-value=0.0045  Score=45.62  Aligned_cols=57  Identities=18%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |..|.+..+..++-++++++.. .++||..+|||. .+.+-+.+.+||+.+=++|+++.
T Consensus       317 GlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~  375 (409)
T PLN02826        317 GLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY  375 (409)
T ss_pred             CcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence            4678888888999999988764 369999999996 56899999999999999999654

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=96.90  E-value=0.00058  Score=48.89  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQA   69 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~   69 (82)
                      |+.|....|-.++.++++++..+ ++||.+.|||. .+.+.+++.+||+.+-++|+++. .+++...
T Consensus       264 GlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~  330 (335)
T TIGR01036       264 GLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKE  330 (335)
T ss_pred             cccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHH
Confidence            46677777888888999887653 69999999996 45699999999999999999765 4555433

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=96.88  E-value=0.00073  Score=45.53  Aligned_cols=43  Identities=33%  Similarity=0.417  Sum_probs=38.4

Q ss_pred             cEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHHHHHH
Q psy11601         31 NIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus        31 ~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      .....||++....+.+.. .|+|.+++|++|..++||.++++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i  226 (226)
T PF00215_consen  183 QGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI  226 (226)
T ss_dssp             TCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred             cccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence            578889999998988877 8899999999999999999988864

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=96.88  E-value=0.0074  Score=41.87  Aligned_cols=61  Identities=20%  Similarity=0.350  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      -..|+-+++.. ++|+.||-||. +....+..+.|+|.|-+-++|-.+.||....+.|+..++
T Consensus       171 ~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~  232 (262)
T COG2022         171 PYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE  232 (262)
T ss_pred             HHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence            34456666665 79999999995 688999999999999999999999999999888887654

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=96.84  E-value=0.0025  Score=45.31  Aligned_cols=53  Identities=15%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~   70 (82)
                      ++..+++++.. ++||.+.||| +++.+.++++.| +|.|.+|++++..+|+...+
T Consensus       279 ~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~  333 (336)
T cd02932         279 VPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHA  333 (336)
T ss_pred             HHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHH
Confidence            45566777765 6899999999 899999999998 99999999999888876544

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=96.83  E-value=0.0014  Score=43.58  Aligned_cols=56  Identities=16%  Similarity=0.248  Sum_probs=39.1

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC   63 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~   63 (82)
                      .|-.|+.|.-+.+.++.+...   +.|+...||++++|+.++++ ..+.+|=+.|.+=.+
T Consensus       126 ~GgtG~~~dw~~~~~~~~~~~---~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~  182 (197)
T PF00697_consen  126 SGGTGKTFDWSLLKKIVESYS---PKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETS  182 (197)
T ss_dssp             STSSSS---GGGGCCCHHT-G---TSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred             CCcCCcccCHHHhhhhhhhcc---cCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccC
Confidence            566788898888877665333   57999999999999999999 899999999988543

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=96.82  E-value=0.0034  Score=42.65  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++-++++.+.. ++|+.+-|||+- +.+..+...|++.+++||+++..
T Consensus       177 ~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g  224 (233)
T cd04723         177 DLELLERLAARA-DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG  224 (233)
T ss_pred             CHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence            455666666663 689999999976 99999999999999999998864

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=96.82  E-value=0.0052  Score=41.34  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCC---CCHHHHHHHHHHHHHHhh
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINC---PDRIQAISTLKSSVQKYL   81 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~~~~   81 (82)
                      |-.|..|.-..+.     ++.  +.|+...|||+++|+.++.+. ++.++=+.|.+=..   .|+ +.+++|.+.+++..
T Consensus       138 GGtG~~~dw~~l~-----~~~--~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~-~ki~~f~~~~~~~~  209 (210)
T PRK01222        138 GGTGKTFDWSLLP-----AGL--AKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGIKDP-EKIRAFIEAVKSAD  209 (210)
T ss_pred             CCCCCccchHHhh-----hcc--CCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCCCCcCH-HHHHHHHHHHHhhc
Confidence            4556666544331     112  458999999999999999875 88888888887543   343 46666666666543

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=96.80  E-value=0.0061  Score=43.56  Aligned_cols=73  Identities=25%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHH-HHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQ-AISTLKSSVQ   78 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~-~~~~l~~~~~   78 (82)
                      |..|.+..|-.++-|+++++. .+++||...|||. .+++-+.+.+||+.+=++|+++. .+.+-+ -.+.|.+.++
T Consensus       217 GLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~  293 (310)
T COG0167         217 GLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLE  293 (310)
T ss_pred             CcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence            577889999999999998876 3469999999996 56699999999999999999775 355433 3344555443

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=96.80  E-value=0.0074  Score=41.23  Aligned_cols=58  Identities=12%  Similarity=0.095  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHH-cCCCEEEEeccccC-CCCHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAK-AGANWIVSGTAVIN-CPDRIQAISTLK   74 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~-~Gad~vv~gs~i~~-~~d~~~~~~~l~   74 (82)
                      .++-++++++.. ++|+.+.||++- +.+.++.+ .|++.+++|++++. .-++.+..+.++
T Consensus       185 d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~  245 (253)
T PRK02083        185 DLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA  245 (253)
T ss_pred             CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Confidence            366777777765 589999999976 78888886 59999999999875 445554444443

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=96.78  E-value=0.0044  Score=43.89  Aligned_cols=47  Identities=17%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..+.-++++++.. ++||.+.|||.-. .+..++..|||++.+||.+..
T Consensus       148 ~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~  195 (307)
T TIGR03151       148 TTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC  195 (307)
T ss_pred             cHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence            4577788887765 5899999999754 488999999999999998665

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=96.78  E-value=0.005  Score=41.26  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++.++++++.. ++|+.+-|||+- +.+..+...|||++++|++++..
T Consensus       177 ~~~~i~~i~~~~-~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~  224 (230)
T TIGR00007       177 NFELTKELVKAV-NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG  224 (230)
T ss_pred             CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence            477778877764 689999999976 79999999999999999998753

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.76  E-value=0.0046  Score=41.75  Aligned_cols=40  Identities=28%  Similarity=0.456  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEe
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~g   57 (82)
                      .+.++++++.. +.|+.+-||| +.+.++++.++|||.+|+|
T Consensus       165 ~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       165 PETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             HHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            45555555554 5899999999 7899999999999999987

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=96.76  E-value=0.0051  Score=44.35  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQK   79 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~~   79 (82)
                      ..+-|.++++...++||.++|||+ ...+..++..|||.+-+|++++.+      +.....++.+.+.++.
T Consensus       248 t~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~  318 (352)
T PRK05437        248 TAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKI  318 (352)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            555666666653479999999995 677888999999999999987653      2233455555555543

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=96.73  E-value=0.0045  Score=44.10  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=43.5

Q ss_pred             HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +-.+++++.. ++||.+.|+| +++.+.++++.| +|.|.+|+.+...+++..+++
T Consensus       282 ~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~  336 (338)
T cd04733         282 EFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL  336 (338)
T ss_pred             HHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence            4455677765 6999999999 688999999887 899999999998888766553

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.73  E-value=0.0034  Score=46.28  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=35.5

Q ss_pred             HHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         19 KVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.++.+.. ++||.+|||| +...+...+.+||+.+++|+++.+
T Consensus       247 ~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag  290 (404)
T PRK06843        247 DVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG  290 (404)
T ss_pred             HHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee
Confidence            344444332 6899999999 788999999999999999999987

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=96.65  E-value=0.0088  Score=41.69  Aligned_cols=56  Identities=25%  Similarity=0.396  Sum_probs=45.6

Q ss_pred             HHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         19 KVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        19 ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      .-.++....| +..++.-.||+ ++++..+...|+|.|-+|+++.+++|+.+.++++.
T Consensus       196 ~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~  253 (254)
T COG0134         196 TTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL  253 (254)
T ss_pred             HHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence            3344444443 36688889998 99999999999999999999999999988887763

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=96.62  E-value=0.0056  Score=42.26  Aligned_cols=48  Identities=31%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |...+.+++....   .++.+=|||+ .+...++.++|||.+|+|+.+....
T Consensus       179 Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~  227 (240)
T COG1646         179 PVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP  227 (240)
T ss_pred             CcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence            3444445544443   4899999996 5777889999999999999998644

>PLN02411 12-oxophytodienoate reductase

Probab=96.60  E-value=0.0051  Score=44.93  Aligned_cols=52  Identities=21%  Similarity=0.321  Sum_probs=43.9

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .+++++.. +.|+.+.|+++.+...++++.| +|.|.+|+++...+|+...+++
T Consensus       305 a~~ik~~v-~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~  357 (391)
T PLN02411        305 MRTLRRAY-QGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL  357 (391)
T ss_pred             HHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence            35566665 5799999999999999999999 9999999999988898766643

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=96.59  E-value=0.0054  Score=41.56  Aligned_cols=67  Identities=22%  Similarity=0.408  Sum_probs=49.9

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCC-CEEEEeccccCC---CCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGA-NWIVSGTAVINC---PDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Ga-d~vv~gs~i~~~---~d~~~~~~~l~~~~~   78 (82)
                      +|-.||.|.-+.+...      ....|+...||+|++|+.+.++.+. .++=+.|.+=.+   .|+. .+++|.+.++
T Consensus       136 ~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~-kv~~f~~~vk  206 (208)
T COG0135         136 PGGTGQTFDWNLLPKL------RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSPGIKDPA-KVKAFFEAVK  206 (208)
T ss_pred             CCCCCcEECHHHhccc------cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccCCCCCCHH-HHHHHHHHHh
Confidence            6888999887666555      1245799999999999999999998 888788887543   3543 5666655544

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=96.58  E-value=0.0024  Score=45.85  Aligned_cols=53  Identities=21%  Similarity=0.392  Sum_probs=42.7

Q ss_pred             HHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHH
Q psy11601         19 KVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        19 ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .++++++.. .++||.+.||| +++.+.++++.|+|.|.+|+++...+|+...+.
T Consensus       273 ~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~  327 (353)
T cd04735         273 IMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIK  327 (353)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHH
Confidence            344455443 36899999999 799999999999999999999988888766554

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.56  E-value=0.0082  Score=41.27  Aligned_cols=53  Identities=11%  Similarity=0.209  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHc-----C-CCEEEEeccccCCC-CHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKA-----G-ANWIVSGTAVINCP-DRIQA   69 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~-----G-ad~vv~gs~i~~~~-d~~~~   69 (82)
                      .++.++++++.. ++|+.+.||++- +.+..+...     | ++++++|++++... ++.+.
T Consensus       176 d~el~~~l~~~~-~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~  236 (241)
T PRK14114        176 DFSLTRKIAIEA-EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVM  236 (241)
T ss_pred             CHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHH
Confidence            455666766663 689999999986 899999886     6 99999999998643 44443

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=96.55  E-value=0.0081  Score=40.21  Aligned_cols=47  Identities=17%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcC-CCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAG-ANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~G-ad~vv~gs~i~~~   63 (82)
                      .++.++++++.. ++|+.+-|||+- +.+.++.+.| ++++++|++++..
T Consensus       178 d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~  226 (233)
T PRK00748        178 NVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG  226 (233)
T ss_pred             CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence            577788888775 589999999976 8999999998 9999999998753

>cd00945 Aldolase_Class_I Class I aldolases

Probab=96.52  E-value=0.0049  Score=39.56  Aligned_cols=54  Identities=22%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCcc------hHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEe
Q psy11601          4 EPGFGGQKFMQD------MMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSG   57 (82)
Q Consensus         4 ~pG~~gq~~~~~------~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~g   57 (82)
                      +||..+=+....      .++.++++++..+ ++++.+.||++ ++++.++...|++++++|
T Consensus       140 ~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         140 EAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             HhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence            455555444443      6777888777654 67999999999 888999999999999875

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=96.52  E-value=0.012  Score=40.70  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCC-CHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCP-DRIQAISTLK   74 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~-d~~~~~~~l~   74 (82)
                      ++-.+++.+.. ++|+.+.|||+ .+.+..+... |+.++++|++++... ++.++++-++
T Consensus       180 ~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~  239 (241)
T COG0106         180 VDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR  239 (241)
T ss_pred             HHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence            34455666655 68999999995 6889999999 899999999998743 6666665443

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.51  E-value=0.0057  Score=43.94  Aligned_cols=46  Identities=20%  Similarity=0.415  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.-++++++.. ++||.++|||. ...+...+..|||.+.+|+++.+
T Consensus       189 ~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~  235 (326)
T PRK05458        189 QLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAG  235 (326)
T ss_pred             HHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcC
Confidence            455677776654 68999999995 56788999999999999999885

>KOG0538|consensus

Probab=96.51  E-value=0.022  Score=41.01  Aligned_cols=75  Identities=15%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCccc-HHHHHHcCCCEEEEecc-ccC-----CCCHHHHHHHHHH
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNT-IDECAKAGANWIVSGTA-VIN-----CPDRIQAISTLKS   75 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~n-i~~~~~~Gad~vv~gs~-i~~-----~~d~~~~~~~l~~   75 (82)
                      |.|-..+.+.|..++-+.++.+. ..++|+..|||++..| +-..++.||.++-+|+. +|+     .+..++.++-|++
T Consensus       252 NHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~  331 (363)
T KOG0538|consen  252 NHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRD  331 (363)
T ss_pred             CCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHH
Confidence            56777788899999999996653 4579999999998754 55667899999999988 455     2345555555555


Q ss_pred             HHH
Q psy11601         76 SVQ   78 (82)
Q Consensus        76 ~~~   78 (82)
                      .++
T Consensus       332 efe  334 (363)
T KOG0538|consen  332 EFE  334 (363)
T ss_pred             HHH
Confidence            443

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.50  E-value=0.0061  Score=41.61  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++-++++++.. ++|+.+-||++- +.+..+.+.|++.+++|++++.
T Consensus       181 ~~li~~l~~~~-~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        181 FELTGQLVKAT-TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             HHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence            45566666653 689999999976 7999999999999999999986

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=96.50  E-value=0.006  Score=43.77  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      ++-.+++++.. ++||.+.|+| +++.+.++++.| +|.|.+|+.+...+++...+.+
T Consensus       264 ~~~~~~ik~~~-~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~  320 (337)
T PRK13523        264 VPFAEHIREHA-NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK  320 (337)
T ss_pred             HHHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence            34455666664 5899999998 688899999987 9999999999988887655543

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=96.44  E-value=0.012  Score=42.65  Aligned_cols=56  Identities=16%  Similarity=0.217  Sum_probs=41.7

Q ss_pred             CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCccc-HHHHHHcCCCEEEEecccc
Q psy11601          6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNT-IDECAKAGANWIVSGTAVI   61 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~n-i~~~~~~Gad~vv~gs~i~   61 (82)
                      |-..-.|.+..++-|.++++. .++++|.+||||+-.. +-..+..||+.+.+|+.++
T Consensus       256 GGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l  313 (356)
T PF01070_consen  256 GGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL  313 (356)
T ss_dssp             TGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             CcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence            334456778889999998874 3479999999998765 8888899999999998854

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.42  E-value=0.0085  Score=40.58  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++-++++++.. ++|+.+.|||+ .+.+..+...|++.+++|++++.
T Consensus       172 d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~  218 (221)
T TIGR00734       172 NLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK  218 (221)
T ss_pred             CHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence            467777777764 68999999996 56888999999999999999874

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=96.41  E-value=0.016  Score=39.75  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcC-CCEEEEeccccCCC-CHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAG-ANWIVSGTAVINCP-DRI   67 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~G-ad~vv~gs~i~~~~-d~~   67 (82)
                      .++-++++++.. ++|+.+.|||+- +.+.++...| +|++++|++++... ++.
T Consensus       187 ~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~  240 (254)
T TIGR00735       187 DLELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIG  240 (254)
T ss_pred             CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence            356667777764 689999999976 7899999988 99999999988643 444

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=96.38  E-value=0.0091  Score=43.18  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=42.2

Q ss_pred             HHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         21 KWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +++++.. +.||.+.|+++++.+.++++.| +|.|.+|+++...+|+..+++
T Consensus       285 ~~ik~~~-~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~  335 (362)
T PRK10605        285 EKVRARF-HGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQ  335 (362)
T ss_pred             HHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHh
Confidence            4466655 4789999999999999999998 999999999998888766554

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=96.37  E-value=0.017  Score=39.39  Aligned_cols=58  Identities=14%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHH---HcCCCEEEEeccccC-CCCHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA---KAGANWIVSGTAVIN-CPDRIQAIS   71 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~---~~Gad~vv~gs~i~~-~~d~~~~~~   71 (82)
                      ....++.++++++.. ++|+.+-|||+- +.+..+.   ..|++++++|++++. .-++.++.+
T Consensus       175 ~G~d~~~i~~i~~~~-~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~  237 (241)
T PRK14024        175 TGPNLELLREVCART-DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA  237 (241)
T ss_pred             cCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence            334678888888774 699999999974 6777664   359999999999775 445555443

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=96.28  E-value=0.011  Score=42.22  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ++||.++|||. ...+...+++||+.+.+|+.+...
T Consensus       197 ~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t  232 (325)
T cd00381         197 GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT  232 (325)
T ss_pred             CCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence            58999999997 599999999999999999998763

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=96.27  E-value=0.0098  Score=41.37  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC------CHHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP------DRIQAISTLKSSVQK   79 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~------d~~~~~~~l~~~~~~   79 (82)
                      |-.++.|+.+++..+ .|+.+=-|++++|+.++++. +|++++||.+=...      |+ +.+++|-+..++
T Consensus       191 ~~d~~el~~a~~~~~-~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G~~~n~VD~-~Rv~~~v~~a~~  259 (263)
T COG0434         191 PPDLEELKLAKEAVD-TPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGGVTWNPVDL-ERVRRFVEAARR  259 (263)
T ss_pred             CCCHHHHHHHHhccC-CCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCCEecCccCH-HHHHHHHHHHHH
Confidence            456777888888764 99999999999999999998 99999999986522      33 345555544443

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=96.23  E-value=0.019  Score=45.04  Aligned_cols=59  Identities=24%  Similarity=0.337  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        17 ~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      ++.-.++....| ...++.-+||+ ++++..+..+|+|.|.+|+++..++||.+.+++|..
T Consensus       198 ~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~  258 (695)
T PRK13802        198 VNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVK  258 (695)
T ss_pred             HHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence            444455555554 35567778887 699999999999999999999999999999988864

>KOG2335|consensus

Probab=96.19  E-value=0.011  Score=42.92  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=45.1

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHH-cCCCEEEEecccc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAK-AGANWIVSGTAVI   61 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~-~Gad~vv~gs~i~   61 (82)
                      |.+-.|..++.|+.+++..+.+|+.+-|+|. .+.+..+.+ .|+|+|.++.++.
T Consensus       183 g~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL  237 (358)
T KOG2335|consen  183 GLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLL  237 (358)
T ss_pred             CCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence            4447788999999999998779999999997 677777777 9999999997654

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=96.19  E-value=0.019  Score=39.81  Aligned_cols=49  Identities=24%  Similarity=0.464  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      -.+-|+++.+.. +.|+.+=|||+ .+.+..++++|++.+++||.-+..++
T Consensus        63 n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~  112 (241)
T COG0106          63 NLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPD  112 (241)
T ss_pred             cHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHH
Confidence            344556666654 58999999997 56678999999999999988765444

>PLN02535 glycolate oxidase

Probab=96.17  E-value=0.034  Score=40.56  Aligned_cols=50  Identities=18%  Similarity=0.280  Sum_probs=39.8

Q ss_pred             CCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601         12 FMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +.+..++-|.++++. ..++||.+||||. ...+...+..||+.+.+|+.++
T Consensus       260 ~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l  311 (364)
T PLN02535        260 YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI  311 (364)
T ss_pred             CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            456667778887654 3469999999997 4567888999999999998865

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=96.16  E-value=0.027  Score=39.51  Aligned_cols=55  Identities=25%  Similarity=0.418  Sum_probs=42.0

Q ss_pred             CCCCCCCC--cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601          6 GFGGQKFM--QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         6 G~~gq~~~--~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |..|.+-.  ...-+.++++|+.. +.|+++==|| +++.++++.+. ||++|+||++.+
T Consensus       181 GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~  238 (265)
T COG0159         181 GVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK  238 (265)
T ss_pred             cccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence            44554443  22566688888886 6787777676 57899999999 999999999886

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=96.16  E-value=0.016  Score=42.03  Aligned_cols=54  Identities=20%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-.+++++.. ++|+.+.|++ +++.+.++++.| +|.|.+|+.+...+|+...++
T Consensus       278 ~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~  333 (370)
T cd02929         278 EPYIKFVKQVT-SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIR  333 (370)
T ss_pred             HHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHH
Confidence            34445566664 6899999999 578899999987 999999999998888766554

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.15  E-value=0.018  Score=39.24  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC
Q psy11601         28 PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        28 ~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ++.|+.+.||++- +.+.++...|++++++|++++...
T Consensus       181 ~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~  218 (228)
T PRK04128        181 GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR  218 (228)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence            4689999999976 899999999999999999998643

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.14  E-value=0.015  Score=43.90  Aligned_cols=48  Identities=19%  Similarity=0.283  Sum_probs=39.6

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..+..+.++.+.. ++||.+||||. ...+...+++||+.+++||++...
T Consensus       338 ~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t  386 (505)
T PLN02274        338 TAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT  386 (505)
T ss_pred             cHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence            4666677777654 68999999996 567888999999999999999873

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=96.14  E-value=0.032  Score=40.92  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=39.4

Q ss_pred             CCcchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc
Q psy11601         12 FMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      ..+..++-|.++++.. .++||.+||||.. ..+...+..|||.+.+|+.+.
T Consensus       290 ~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l  341 (383)
T cd03332         290 GSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA  341 (383)
T ss_pred             CCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            3556777788877653 3699999999975 457788899999999998854

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=96.12  E-value=0.021  Score=39.27  Aligned_cols=53  Identities=9%  Similarity=0.088  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHH---HcCCCEEEEeccccCCC-CHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECA---KAGANWIVSGTAVINCP-DRIQA   69 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~---~~Gad~vv~gs~i~~~~-d~~~~   69 (82)
                      .++-++++++. .+.|+.+.||++- +.+..+.   ..|++++++|++++... +++++
T Consensus       181 d~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~  238 (243)
T TIGR01919       181 NELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAA  238 (243)
T ss_pred             CHHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHH
Confidence            34455666665 3689999999986 6777765   45999999999998643 55443

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=96.12  E-value=0.036  Score=38.29  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         43 IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        43 i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ..+...+|+|.+|+|+.|+.++||.++++++.+.+...
T Consensus       200 ~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~~  237 (240)
T COG0284         200 PGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIARE  237 (240)
T ss_pred             HHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHHh
Confidence            56777899999999999999999999999888877654

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.11  E-value=0.016  Score=39.66  Aligned_cols=44  Identities=20%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++-++++++. +. ++.+.||++- +.+..+.+.|++++++|++++.
T Consensus       179 ~el~~~~~~~-~~-~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~  223 (232)
T PRK13586        179 YNVKDYARLI-RG-LKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL  223 (232)
T ss_pred             HHHHHHHHhC-CC-CEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence            3445555554 33 4788999987 8999999999999999999984

>PRK14567 triosephosphate isomerase; Provisional

Probab=96.09  E-value=0.025  Score=39.35  Aligned_cols=64  Identities=11%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             CCCCCcchHHHHHH-HHHh--------CCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN--------YPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~--------~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      |+.-.|+..+++.. +|+.        .++++|.-=|+++++|+.++.+.+ +|++-+|++..+++++.+-++.
T Consensus       173 G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~~~~F~~Ii~~  246 (253)
T PRK14567        173 GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQ  246 (253)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhcHHHHHHHHHH
Confidence            44445566655444 3331        246899999999999999999988 9999999998877776655544

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=96.06  E-value=0.039  Score=39.37  Aligned_cols=63  Identities=16%  Similarity=0.269  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-----CCHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-----PDRIQAISTLKSSVQ   78 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-----~d~~~~~~~l~~~~~   78 (82)
                      ..+.|.++++..+++||.++|||+ ...+...+..|||.+.++++++.+     +...+.++.+.+.++
T Consensus       242 t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~  310 (326)
T cd02811         242 TAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELR  310 (326)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            456677777665579999999985 667788889999999999976531     122344555555444

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=96.06  E-value=0.042  Score=40.07  Aligned_cols=47  Identities=17%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +..++-+.++++.. +++|.+||||+.. .+...+..||+.+.+|+++.
T Consensus       275 ~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l  322 (361)
T cd04736         275 IAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATL  322 (361)
T ss_pred             ccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            45788888888765 4899999999754 67788899999999998865

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=96.05  E-value=0.032  Score=39.07  Aligned_cols=56  Identities=18%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc--CCCEEEEeccc--cCCC-CHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA--GANWIVSGTAV--INCP-DRIQAIST   72 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~--Gad~vv~gs~i--~~~~-d~~~~~~~   72 (82)
                      .++-++++++.. ++|+.+.||++ .+.+..+...  |+.++++|++|  |... +.++.+++
T Consensus       195 d~el~~~l~~~~-~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~~~  256 (262)
T PLN02446        195 DEELVALLGEHS-PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVVAW  256 (262)
T ss_pred             CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHHHH
Confidence            466667777763 68999999995 6888888887  57899999999  7643 45544443

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=96.04  E-value=0.0077  Score=42.59  Aligned_cols=65  Identities=15%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             CccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc-CCCEEEEeccccCCCCH
Q psy11601          1 MTVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA-GANWIVSGTAVINCPDR   66 (82)
Q Consensus         1 m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~-Gad~vv~gs~i~~~~d~   66 (82)
                      ++||+-...|++. +..++.|+++++.. ++||.+=|+|. .+.+..+.+. |+|+|.+|++.+..+.+
T Consensus       155 i~vH~Rt~~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~l  222 (309)
T PF01207_consen  155 ITVHGRTRKQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWL  222 (309)
T ss_dssp             EEEECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCH
T ss_pred             EEEecCchhhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHH
Confidence            3688888888887 77888899998876 49999999995 5666666665 99999999887765543

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=96.04  E-value=0.019  Score=41.72  Aligned_cols=53  Identities=26%  Similarity=0.438  Sum_probs=42.9

Q ss_pred             HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .-.+++++.. ++|+.+.||| +++.+.++++.| +|.|.+|+++...+|+...+.
T Consensus       295 ~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~  349 (382)
T cd02931         295 PYCKALKEVV-DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR  349 (382)
T ss_pred             HHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHH
Confidence            3455667665 6899999999 788899999876 999999999998888765553

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=96.03  E-value=0.011  Score=40.71  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCH
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDR   66 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~   66 (82)
                      ++++|.-=|+|+++|+.++...+ +|++-+|++..++++.
T Consensus       198 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f  237 (242)
T cd00311         198 EKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESF  237 (242)
T ss_pred             CceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHHHH
Confidence            36899999999999999999999 9999999998865443

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=95.99  E-value=0.023  Score=43.28  Aligned_cols=48  Identities=23%  Similarity=0.388  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc------------ccHHHHHHcCCCEEEEeccccCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP------------NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~------------~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..++-|+++.+.. .+|+.+=|||+-            +.++.++.+|||-++++|+.+..
T Consensus       301 ~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~  360 (538)
T PLN02617        301 PMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYA  360 (538)
T ss_pred             hHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhC
Confidence            3577788877765 589999999998            78999999999999999987764

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=95.94  E-value=0.022  Score=40.82  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-++++++.. ++||.+.|+| +++.+..+++.| +|.|.+|+.+...+++...+.
T Consensus       274 ~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~  329 (343)
T cd04734         274 LPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAR  329 (343)
T ss_pred             HHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence            34456666665 6899999998 779999999866 999999999998888765543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>TIGR02814 pfaD_fam PfaD family protein

Probab=95.92  E-value=0.019  Score=42.94  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.1

Q ss_pred             CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++||.+.||| +.+.+......|||.+.+||....
T Consensus       224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla  258 (444)
T TIGR02814       224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC  258 (444)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence            5889999999 899999999999999999998654

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=95.82  E-value=0.034  Score=37.93  Aligned_cols=42  Identities=19%  Similarity=0.171  Sum_probs=36.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEecc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTA   59 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~   59 (82)
                      ..++.|++++   .++||.+-||| +.+.+.++...|||.+.+|++
T Consensus       180 ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~  222 (233)
T cd02911         180 ADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA  222 (233)
T ss_pred             CcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence            3466677766   36899999999 889999999999999999999

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>KOG3055|consensus

Probab=95.82  E-value=0.041  Score=37.49  Aligned_cols=34  Identities=18%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             cEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         31 NIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        31 ~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      -+.+-||||-+|.-++++.||.-+++.|.+|...
T Consensus        84 ~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g  117 (263)
T KOG3055|consen   84 GLQVGGGINSENCMSWLEEGASKVIVTSWLFNNG  117 (263)
T ss_pred             ceeecCccChHHHHHHHHhcCceEEEEEEeccCC
Confidence            4899999999999999999999999999999743

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=95.81  E-value=0.024  Score=41.13  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             HHHHHHHHhCCCCcEEEEcCC-------------------CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGV-------------------GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI-------------------~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .-.+++++.. ++|+.+.|+|                   +++.+.++++.| +|.+.+|+++...+++...++
T Consensus       270 ~~~~~~k~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~  342 (361)
T cd04747         270 NLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVR  342 (361)
T ss_pred             hHHHHHHHHc-CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHH
Confidence            3344566654 5899999998                   778899999876 999999999998888765543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=95.76  E-value=0.024  Score=40.40  Aligned_cols=47  Identities=17%  Similarity=0.300  Sum_probs=35.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..+.-+.++++.. ++||.+.||| +.+.+...+..||+++.+|+.+..
T Consensus       177 ~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~  224 (330)
T PF03060_consen  177 STFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  224 (330)
T ss_dssp             -HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred             ceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence            3566677788776 5999999999 556799999999999999988654

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=95.75  E-value=0.063  Score=40.44  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             HHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCC------EEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         20 VKWLRENYPTLNIEVDG-GVGPNTIDECAKAGAN------WIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad------~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      ++++|+..|+.+|.+=| |---.++.++..+|.|      .+.++++|..++||.+++++|++.++++.
T Consensus       194 ~~~iR~~~p~~~iL~PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~  262 (477)
T PRK05500        194 LAKIRQIAPERLILLRSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIR  262 (477)
T ss_pred             HHHHHHhCCCCEEEccccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44455544554443332 1223347888888887      78888999999999999999999887653

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=95.73  E-value=0.027  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ++|+.+||||. ...+...+++||+.+.+|+.+.+.
T Consensus       327 ~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~  362 (450)
T TIGR01302       327 GIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT  362 (450)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence            68999999995 678889999999999999999874

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=95.72  E-value=0.049  Score=39.49  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=44.9

Q ss_pred             cchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC------CCCHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN------CPDRIQAISTLKSSVQ   78 (82)
Q Consensus        14 ~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~------~~d~~~~~~~l~~~~~   78 (82)
                      |..++-+.++++.. +++||.++|||.. ..+...+..||+.+.+|++++.      .+.....++.|++.++
T Consensus       260 ~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~  332 (351)
T cd04737         260 PASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELK  332 (351)
T ss_pred             chHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            45667777776643 4699999999974 5677788899999999988543      1223344445554444

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.72  E-value=0.039  Score=36.69  Aligned_cols=47  Identities=19%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..++.++.+++.. ++||.+-|+|... .+..+.++|||+++++...+.
T Consensus        59 g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~  106 (217)
T cd00331          59 GSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD  106 (217)
T ss_pred             CCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC
Confidence            3456666666664 6888876666555 899999999999999987664

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=95.64  E-value=0.042  Score=41.12  Aligned_cols=48  Identities=19%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++-+.++++.  ..++|+.+||||. ...+...+.+|||.+++|++|.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~  366 (486)
T PRK05567        316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT  366 (486)
T ss_pred             HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence            45555554442  1368999999996 567888889999999999999874

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=95.64  E-value=0.029  Score=41.59  Aligned_cols=34  Identities=24%  Similarity=0.493  Sum_probs=31.1

Q ss_pred             CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++||.+.||| +.+.+......||+.+.+||....
T Consensus       219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla  253 (418)
T cd04742         219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC  253 (418)
T ss_pred             CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence            5899999999 899999999999999999998654

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=95.62  E-value=0.031  Score=41.51  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+..++.|+++++.+|+++|.+=+..+.+.+..+.++|||++.+|
T Consensus       248 ~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg  293 (450)
T TIGR01302       248 HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG  293 (450)
T ss_pred             cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence            4467888899999988889999988999999999999999999655

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=95.62  E-value=0.018  Score=41.34  Aligned_cols=54  Identities=11%  Similarity=0.188  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-.+++++.. ++||.+.|++ +++.+.++++.| +|.|.+|+.++..+++...+.
T Consensus       265 ~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~  320 (353)
T cd02930         265 AWATAKLKRAV-DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAA  320 (353)
T ss_pred             HHHHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHH
Confidence            33456677765 6899999998 788899999977 999999999998888765543

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=95.60  E-value=0.078  Score=38.74  Aligned_cols=47  Identities=19%  Similarity=0.283  Sum_probs=36.5

Q ss_pred             cchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccc
Q psy11601         14 QDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAV   60 (82)
Q Consensus        14 ~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i   60 (82)
                      +..++-|.++++.. .++||.+||||.. ..+...+..|||.+.+|+.+
T Consensus       267 ~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~  315 (367)
T TIGR02708       267 PAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPV  315 (367)
T ss_pred             CcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHH
Confidence            55577777777643 4699999999974 45666777999999999884

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=95.57  E-value=0.064  Score=37.24  Aligned_cols=55  Identities=18%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             HHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601         18 PKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus        18 ~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      +.-.++....| +..+++-+||+- +++..+... +|.|.+|+++.+++||.+.+++|
T Consensus       190 ~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l  246 (247)
T PRK13957        190 NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL  246 (247)
T ss_pred             HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence            44445555544 355667788874 778888886 99999999999999999888765

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=95.51  E-value=0.061  Score=38.95  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=39.7

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      ++.++.-+||. .+.+..+.++|+|.|-+|.++.+++||.+.+++|.
T Consensus       288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~  334 (338)
T PLN02460        288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF  334 (338)
T ss_pred             CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence            34466668885 58999999999999999999999999999988875

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=95.51  E-value=0.035  Score=38.53  Aligned_cols=51  Identities=22%  Similarity=0.368  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      -+++-+++..+.. .+|+.+-|||+ .++++.++.+|||-+.+.|+-...++.
T Consensus        61 ~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~l  112 (256)
T COG0107          61 TMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPEL  112 (256)
T ss_pred             hHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHH
Confidence            4556666655554 58999999995 799999999999999999886655553

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=95.49  E-value=0.036  Score=41.63  Aligned_cols=46  Identities=24%  Similarity=0.250  Sum_probs=39.7

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .....++.++++++.+|++|+.+.-+.+.+.+..+.++|||.|-+|
T Consensus       249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg  294 (475)
T TIGR01303       249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG  294 (475)
T ss_pred             CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence            3466778899999988889999966999999999999999999744

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=95.46  E-value=0.064  Score=36.18  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             CCCcchHHHHHHHHHh-CCCCcEEEEcCCCcccHHHHHH-cCCCEE
Q psy11601         11 KFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK-AGANWI   54 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~~-~Gad~v   54 (82)
                      .-..+.++.|+++.+. ..++.|.+-|||+.+|++.+.+ +|+.-|
T Consensus       151 ~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~~~  196 (201)
T PF03932_consen  151 PTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVREI  196 (201)
T ss_dssp             SSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence            3445678888887654 3468999999999999999988 888765

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=95.46  E-value=0.033  Score=38.75  Aligned_cols=49  Identities=16%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      |+.-..+.++.|+++.+......|.+=|||+.+|+.++...|+.-|=.+
T Consensus       150 g~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~s  198 (248)
T PRK11572        150 QQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHSS  198 (248)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEeeC
Confidence            3444567788888887765454599999999999999999999877544

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=95.44  E-value=0.07  Score=38.79  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=51.6

Q ss_pred             CCCCCCCCc----chHHHHHHH-HHh----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601          6 GFGGQKFMQ----DMMPKVKWL-REN----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus         6 G~~gq~~~~----~~~~ki~~~-~~~----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      |.+|+.-.+    +..+.|++. .+.    .++++|.-=|+|+++|+.++. ..++|++-+|++..+++++.+-++.+.+
T Consensus       181 GTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~f~~Ii~~~~~  260 (355)
T PRK14905        181 GEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDAQCFHALIADALK  260 (355)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccHHHHHHHHHHHHH
Confidence            555666666    444455553 322    235899999999999999874 5679999999999988888777666655


Q ss_pred             H
Q psy11601         76 S   76 (82)
Q Consensus        76 ~   76 (82)
                      .
T Consensus       261 ~  261 (355)
T PRK14905        261 A  261 (355)
T ss_pred             h
Confidence            4

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=95.24  E-value=0.053  Score=40.61  Aligned_cols=45  Identities=18%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ....++.++++++..|++|+.+-++.+.+.+..+.++|||+|.+|
T Consensus       253 ~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg  297 (486)
T PRK05567        253 SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVG  297 (486)
T ss_pred             chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence            356888899999887789999999999999999999999999775

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=95.17  E-value=0.069  Score=39.97  Aligned_cols=67  Identities=21%  Similarity=0.359  Sum_probs=46.8

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC---CCHHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC---PDRIQAISTLKSSVQK   79 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~~   79 (82)
                      +|..|+.|.-..+.      ... ..|+...||++++|+.+....++.+|=+.|.+=..   .|+ +.+++|.+.++.
T Consensus       384 ~GGtG~~~DW~~l~------~~~-~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~~pG~KD~-~Ki~~Fi~~vr~  453 (454)
T PRK09427        384 QGGTGQTFDWSLLP------GQS-LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVESAPGIKDA-QKLASVFQTLRA  453 (454)
T ss_pred             CCCCCCccChHHhh------hcc-cCCEEEECCCCHHHHHHHHhcCCCEEEeCCcccCCCCCcCH-HHHHHHHHHHhh
Confidence            46667777653332      122 46899999999999999999999999888888643   343 355666555543

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=95.11  E-value=0.11  Score=37.36  Aligned_cols=46  Identities=20%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.-|.++++.. ++||.+||||+- .++...+.+|||.+.+|+.+-+
T Consensus       186 ~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag  232 (321)
T TIGR01306       186 QLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG  232 (321)
T ss_pred             HHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC
Confidence            356677776654 689999999974 5677888899999999988866

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=95.11  E-value=0.14  Score=37.03  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=35.5

Q ss_pred             chHHHHHHHHH----hCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRE----NYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~----~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..++-+.++++    ...++||.++|||. ...+...+..||+.+.+|++++.
T Consensus       253 ~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~  305 (344)
T cd02922         253 APIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY  305 (344)
T ss_pred             CHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            34444444444    23468999999997 46788899999999999988654

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PLN02979 glycolate oxidase

Probab=95.10  E-value=0.15  Score=37.27  Aligned_cols=56  Identities=18%  Similarity=0.280  Sum_probs=41.6

Q ss_pred             CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc
Q psy11601          6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~   61 (82)
                      |..+....|..++-+.++++. .++++|.+||||+.. .+...+..|||.+.+|+.+.
T Consensus       254 GGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L  311 (366)
T PLN02979        254 GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV  311 (366)
T ss_pred             CcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            333334556678888887664 356999999999754 56677789999999998854

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=95.08  E-value=0.06  Score=38.50  Aligned_cols=53  Identities=13%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCccc-HHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPNT-IDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~n-i~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +-.+.+++.. +.|+.+.||++... +.++++.| +|.|.+|+++...+|+..+++
T Consensus       281 ~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~  335 (341)
T PF00724_consen  281 DLAEAIKKAV-KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAR  335 (341)
T ss_dssp             HHHHHHHHHH-SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHH
T ss_pred             hhhhhhhhhc-CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHH
Confidence            3445566654 58999999998877 77777766 999999999998888876654

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=95.08  E-value=0.075  Score=38.87  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCC-CcccHHHHHHcCCCEEEEecccc
Q psy11601         28 PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        28 ~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .+++|.++||| +...+...+..|||.+-+|+...
T Consensus       284 ~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l  318 (392)
T cd02808         284 DRVSLIASGGLRTGADVAKALALGADAVGIGTAAL  318 (392)
T ss_pred             CCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence            36899999999 67889999999999999998854

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=95.07  E-value=0.063  Score=39.05  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             HHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC
Q psy11601         19 KVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ...+.++.+ .+||.+||||+- .++...+.+|||.+.+|+.+-+.
T Consensus       202 ~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt  246 (352)
T PF00478_consen  202 ECAEAARDY-GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT  246 (352)
T ss_dssp             HHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred             HHHHHhhhc-cCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence            334444433 699999999974 68888889999999999998763

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.93  E-value=0.028  Score=40.93  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++||.+|||| +...+...+.+|||.+.+||.+..
T Consensus       256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~  290 (368)
T PRK08649        256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLAR  290 (368)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcc
Confidence            5899999999 677888999999999999999876

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=94.91  E-value=0.063  Score=40.47  Aligned_cols=46  Identities=24%  Similarity=0.293  Sum_probs=37.6

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+..++.|+++++..|+++|.+=...+.+.+..+.++|||++.+|
T Consensus       265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg  310 (495)
T PTZ00314        265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIG  310 (495)
T ss_pred             CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            3455688899999987778888856667899999999999999764

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.84  E-value=0.094  Score=38.79  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ......+.++++++.+|++++++-+-.+.+....+.++|||.|.+|
T Consensus       177 ~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG  222 (404)
T PRK06843        177 HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_pred             CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence            3556778899999988888888888889999999999999999877

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=94.77  E-value=0.11  Score=36.28  Aligned_cols=48  Identities=21%  Similarity=0.302  Sum_probs=42.2

Q ss_pred             CCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         28 PTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.++|.-=|||+++|+.++ .+.++|++-+|++.++++|+...++.+.+
T Consensus       201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~  249 (251)
T COG0149         201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK  249 (251)
T ss_pred             CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence            4799999999999999976 46899999999999999999888877654

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.76  E-value=0.061  Score=40.45  Aligned_cols=48  Identities=21%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .+.-+.++.+.  ...+|+.+||||. ...+...+.+||+.+++|+.+-+.
T Consensus       315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~  365 (479)
T PRK07807        315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGT  365 (479)
T ss_pred             HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccC
Confidence            45555554442  1368999999995 578888999999999999998763

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=94.67  E-value=0.078  Score=36.77  Aligned_cols=45  Identities=20%  Similarity=0.311  Sum_probs=37.5

Q ss_pred             CCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601         28 PTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      ++++|.-=|+|+++|+.++ ...++|++-+|++.++++++.+-++.
T Consensus       202 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii~~  247 (250)
T PRK00042        202 EKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLAIVKA  247 (250)
T ss_pred             CCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeechHHHHHHHHH
Confidence            3589999999999999876 56789999999999988877766543

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=94.67  E-value=0.11  Score=34.88  Aligned_cols=66  Identities=14%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH--cCCCEEEEeccccC--CCCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK--AGANWIVSGTAVIN--CPDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~--~Gad~vv~gs~i~~--~~d~~~~~~~l~~~~~   78 (82)
                      +|-.|+.|.-+.+   +++   . ..|+...||++++|+.++..  .+..++=+.|.+=.  -.|+ +.+++|.+.++
T Consensus       135 ~GGtG~~~dw~~~---~~~---~-~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~-~ki~~f~~~v~  204 (207)
T PRK13958        135 YGGTGQTYDWTIL---KHI---K-DIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIETNGRKDI-NKMTAIVNIVK  204 (207)
T ss_pred             CCcCCcEeChHHh---hhc---c-CCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccCCCCCCCH-HHHHHHHHHHH
Confidence            3555666654433   333   1 35899999999999999764  47777777777642  2344 35555555443

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=94.56  E-value=0.21  Score=36.76  Aligned_cols=65  Identities=11%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             cchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc-C-----CCCHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI-N-----CPDRIQAISTLKSSVQ   78 (82)
Q Consensus        14 ~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~-~-----~~d~~~~~~~l~~~~~   78 (82)
                      +..++-+.++++.. .++||.+||||.. ..+...+..||+.+.+|+.+. .     .+.....++.|++.++
T Consensus       284 ~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~  356 (381)
T PRK11197        284 LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMR  356 (381)
T ss_pred             ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45566677766543 4699999999975 457778899999999998854 2     2234455555555444

>PLN02429 triosephosphate isomerase

Probab=94.54  E-value=0.16  Score=36.44  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=47.1

Q ss_pred             CCCCCcchHHHHHH-HHH----h-----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----N-----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~-----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      |+.-.|+..+.+.+ +|+    .     .++++|.-=|+|+++|+.++. +.++|++-+|++..+++++..-++.
T Consensus       233 Gk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~F~~Ii~~  307 (315)
T PLN02429        233 GKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNS  307 (315)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHHHHHHHHHH
Confidence            55555666665544 231    1     246899999999999998876 6889999999999987777665554

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=94.52  E-value=0.09  Score=35.59  Aligned_cols=48  Identities=17%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHH--cCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAK--AGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~--~Gad~vv~gs~i~~~~d   65 (82)
                      ..++-|+++.+.   +|+.++|||+- +.++.+..  .+|+.+++||..+..++
T Consensus        66 ~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~  116 (221)
T TIGR00734        66 DNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITE  116 (221)
T ss_pred             chHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHH
Confidence            445666666664   48999999984 45666644  36999999999887554

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=94.48  E-value=0.25  Score=36.12  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             CCcchHHHHHHHHHh-CCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc
Q psy11601         12 FMQDMMPKVKWLREN-YPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +.+..++-|.++++. ..+++|.+||||... .+-..+..||+.+.+|+.+.
T Consensus       261 ~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l  312 (367)
T PLN02493        261 YVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV  312 (367)
T ss_pred             CchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            345567777777654 346999999999854 46677788999999998854

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=94.43  E-value=0.073  Score=35.38  Aligned_cols=48  Identities=25%  Similarity=0.383  Sum_probs=32.7

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEE
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIV   55 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv   55 (82)
                      .||....   ..++.++.+++.. .+++|.+.|||+ .+.+.++..+|++.|-
T Consensus       152 TG~~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG  201 (203)
T cd00959         152 TGFGPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG  201 (203)
T ss_pred             CCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence            4565433   4444444444432 468999999998 6778889999998763

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=94.42  E-value=0.098  Score=39.46  Aligned_cols=45  Identities=18%  Similarity=0.271  Sum_probs=35.1

Q ss_pred             HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601         18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..+.++.+.. ++|+.+|||| +...+...+++||+.+.+|+.+.+.
T Consensus       334 ~~~~~~~~~~-~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~  379 (495)
T PTZ00314        334 YHVARYARER-GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT  379 (495)
T ss_pred             HHHHHHHhhc-CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence            3444444433 5899999996 5678889999999999999998763

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=94.40  E-value=0.17  Score=36.83  Aligned_cols=57  Identities=16%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhC--CCCcEEEEcCCCcc------cHHHH---HHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         17 MPKVKWLRENY--PTLNIEVDGGVGPN------TIDEC---AKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        17 ~~ki~~~~~~~--~~~~i~~dGGI~~~------ni~~~---~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      .++++.+.+..  .++|+++.||=+.+      .+...   +++|+.++++|+-+|+.+++. +++-++
T Consensus       267 ~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~e-a~~~~~  334 (348)
T PRK09250        267 IDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAE-GVKLLN  334 (348)
T ss_pred             HHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHH-HHHHHH
Confidence            34445444432  15899999998853      24456   778999999999999977654 443333

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=94.39  E-value=0.056  Score=38.91  Aligned_cols=50  Identities=16%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+..+.-+.++++....+|+.+.||| +.+-+......||+.+-+||....
T Consensus       168 ~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~  218 (336)
T COG2070         168 EVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  218 (336)
T ss_pred             CccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence            55667778888887633899999999 466788889999999999999664

>KOG1799|consensus

Probab=94.22  E-value=0.096  Score=38.57  Aligned_cols=72  Identities=18%  Similarity=0.136  Sum_probs=56.0

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC--CHHHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP--DRIQAISTLKSSV   77 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~--d~~~~~~~l~~~~   77 (82)
                      |+.+....|=.+.++-.+.+....+++..+|||. .++..+++-+|++.+=+.+++...+  -.+.-...|++.+
T Consensus       333 G~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m  407 (471)
T KOG1799|consen  333 GYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFM  407 (471)
T ss_pred             CccccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHH
Confidence            5778888999999999988876689999999994 6788899999999999999987643  2333344444433

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=94.17  E-value=0.12  Score=37.64  Aligned_cols=52  Identities=13%  Similarity=0.209  Sum_probs=41.2

Q ss_pred             CCCCcchHHHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc
Q psy11601         10 QKFMQDMMPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      ..|-+.+++-|-+++...+ +++|.+||||+- ..+...++.|||.+-+|..+.
T Consensus       253 lD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L  306 (360)
T COG1304         253 LDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL  306 (360)
T ss_pred             ccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence            4455777788888887765 499999999974 467778899999999998754

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=94.17  E-value=0.14  Score=36.62  Aligned_cols=44  Identities=18%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +...+.|+++++..|++++.+-.-.+.+.+..+.++|||.++++
T Consensus       120 ~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381         120 VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence            45677788888877667777745566799999999999999973

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=94.13  E-value=0.11  Score=36.17  Aligned_cols=46  Identities=22%  Similarity=0.162  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc--CCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA--GANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~--Gad~vv~gs~i~~   62 (82)
                      .++-++++++. .++|+.+.||++ .+.+.++.+.  |....++|.+||.
T Consensus       189 dlel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~  237 (253)
T TIGR02129       189 DEELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI  237 (253)
T ss_pred             CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence            45666666666 379999999995 6778777554  6777999999875

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=94.02  E-value=0.055  Score=36.59  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             CCcchHHHHHHHHHhCCCCc----EEEEcCC-------CcccHHHHHHcCC--CEEEEeccccC
Q psy11601         12 FMQDMMPKVKWLRENYPTLN----IEVDGGV-------GPNTIDECAKAGA--NWIVSGTAVIN   62 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~----i~~dGGI-------~~~ni~~~~~~Ga--d~vv~gs~i~~   62 (82)
                      ......+.++++.+.. ++|    |.+.||+       +.+.+.+++++||  -+++.|..||+
T Consensus       173 ~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q  235 (236)
T PF01791_consen  173 ATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ  235 (236)
T ss_dssp             SHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred             ccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence            3334455555554432 356    9999999       3445556779999  88888888885

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK15492 triosephosphate isomerase; Provisional

Probab=93.96  E-value=0.21  Score=34.82  Aligned_cols=63  Identities=13%  Similarity=0.088  Sum_probs=44.4

Q ss_pred             CCCCCCCCc----chHHHHHHH-HHh----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHH
Q psy11601          6 GFGGQKFMQ----DMMPKVKWL-REN----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus         6 G~~gq~~~~----~~~~ki~~~-~~~----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      |.+|..-.+    +..+.||+. .+.    .++++|.-=|+|+++|+.++. ...+|++-+|++=..+++..+
T Consensus       180 Gtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~~~~F~~  252 (260)
T PRK15492        180 GEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDADKFFA  252 (260)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcCHHHHHH
Confidence            445666666    445556653 332    236899999999999999985 455999999998776554443

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=93.60  E-value=0.19  Score=36.61  Aligned_cols=48  Identities=21%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +-.+...++.|+++++.+|+.+|.+=-=.+.+-...|..+|||.+-+|
T Consensus       132 hGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG  179 (346)
T PRK05096        132 NGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVG  179 (346)
T ss_pred             CCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            455678889999999998877644433358888999999999998655

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=93.53  E-value=0.16  Score=38.16  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+|+.+||||+ ...+...+.+||+.+.+|+.+-+
T Consensus       328 ~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag  362 (475)
T TIGR01303       328 GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAG  362 (475)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcc
Confidence            68999999996 57888888999999999999876

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.51  E-value=0.21  Score=33.80  Aligned_cols=45  Identities=20%  Similarity=0.373  Sum_probs=39.2

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|+.++-|+++++.+|++.|-+..=++.+.++...++||+++++-
T Consensus        50 ~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP   94 (212)
T PRK05718         50 TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP   94 (212)
T ss_pred             CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence            467888899999888888888888899999999999999998764

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=93.46  E-value=0.21  Score=36.33  Aligned_cols=47  Identities=23%  Similarity=0.420  Sum_probs=37.7

Q ss_pred             CCCCcchHHHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCEEEEe
Q psy11601         10 QKFMQDMMPKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +-.+...++.|+++|+..|+ +.++.| =.+++....+..+|||.+.+|
T Consensus       131 hGhs~~~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg  178 (343)
T TIGR01305       131 NGYSEHFVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG  178 (343)
T ss_pred             CCcHHHHHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            44567788999999998765 455555 368999999999999999877

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=93.37  E-value=0.44  Score=35.77  Aligned_cols=57  Identities=18%  Similarity=0.179  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         18 PKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        18 ~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.-.++....| ++.+++-+||+- +.+..+.. |+|.|.+|+++.+++||.+.+++|..
T Consensus       198 ~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~  256 (454)
T PRK09427        198 NRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL  256 (454)
T ss_pred             HHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc
Confidence            33344444443 455677789874 77877755 79999999999999999999988854

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=93.23  E-value=0.089  Score=35.63  Aligned_cols=51  Identities=25%  Similarity=0.444  Sum_probs=35.2

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEec
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGT   58 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs   58 (82)
                      .||.+..   ...+.++.+++.. .+++|-+.|||+ .+.+.++.++|++.+-..+
T Consensus       153 TGf~~~g---at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~  205 (211)
T TIGR00126       153 TGFGAGG---ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASA  205 (211)
T ss_pred             CCCCCCC---CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence            5665444   3444445444432 368999999998 6778899999999886543

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=93.21  E-value=0.26  Score=35.84  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         28 PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        28 ~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +..||.+||||+- .++...+.+|||.+.+||.+-+
T Consensus       212 ~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAG  247 (346)
T PRK05096        212 LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG  247 (346)
T ss_pred             cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcC
Confidence            3689999999964 5777778899999999999876

>PTZ00333 triosephosphate isomerase; Provisional

Probab=92.94  E-value=0.4  Score=33.37  Aligned_cols=62  Identities=19%  Similarity=0.287  Sum_probs=43.3

Q ss_pred             CCCCCcchHHHHHH-HHH----h-----CCCCcEEEEcCCCcccHHHH-HHcCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----N-----YPTLNIEVDGGVGPNTIDEC-AKAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~-----~~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |+.-.|+.++++.+ +|+    .     .++++|.-=|+|+++|+.++ ...++|++-+|++... +++.+-++
T Consensus       177 g~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~Ii~  249 (255)
T PTZ00333        177 GKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-PDFVDIIK  249 (255)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-hhHHHHHH
Confidence            55556666655443 333    1     23589999999999999876 4678999999999886 35544443

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=92.93  E-value=0.42  Score=36.94  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCC--EEEEeccccCC---CCHHHHHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGAN--WIVSGTAVINC---PDRIQAISTLKSSVQK   79 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad--~vv~gs~i~~~---~d~~~~~~~l~~~~~~   79 (82)
                      |-.|+.|.-+.+   +.+   ....|+...|||+++|+.++++ ..+.  +|=+.|.+=..   .|+ +.+++|.+.+++
T Consensus       142 GGtG~~fdw~~~---~~~---~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~-~ki~~fi~~~k~  214 (610)
T PRK13803        142 GGSGKSFDWEKF---YNY---NFKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKL-TLLKSFITNVKK  214 (610)
T ss_pred             CCCCCccChHHh---hhc---ccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCCCcCH-HHHHHHHHHHHH
Confidence            455677765443   222   2246899999999999999887 3445  66667777643   354 355555555543

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=92.82  E-value=0.097  Score=38.25  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+||.++|||. ...+...+.+|||.+.+|+.+..
T Consensus       255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~  289 (369)
T TIGR01304       255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLAR  289 (369)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHh
Confidence            38999999995 57888889999999999999876

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=92.64  E-value=0.27  Score=33.46  Aligned_cols=54  Identities=22%  Similarity=0.382  Sum_probs=39.5

Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCC-cccHHHHHHcCCCEEEEecc
Q psy11601          3 VEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVG-PNTIDECAKAGANWIVSGTA   59 (82)
Q Consensus         3 v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~   59 (82)
                      .++||..   ....++.++.+++.. .+++|-+.|||+ .+.+.+++++||+.+-..+.
T Consensus       155 TsTG~~~---~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~  210 (221)
T PRK00507        155 TSTGFST---GGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG  210 (221)
T ss_pred             cCCCCCC---CCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence            3567742   225666667766653 469999999995 67888999999999877644

>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5

Probab=92.50  E-value=0.22  Score=34.39  Aligned_cols=59  Identities=19%  Similarity=0.297  Sum_probs=41.1

Q ss_pred             CCCCCcchHHHHHH-HHHh---------CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN---------YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~---------~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~   67 (82)
                      |+.-.++..+++.+ +|+.         ..+++|.-=|+++++|+.++. ..++|++-+|++-.++++..
T Consensus       172 G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~F~  241 (244)
T PF00121_consen  172 GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAESFL  241 (244)
T ss_dssp             SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhcccchh
Confidence            55555555554433 3332         235899999999999999885 68999999999988766543

3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=92.39  E-value=0.33  Score=35.40  Aligned_cols=48  Identities=15%  Similarity=0.286  Sum_probs=38.0

Q ss_pred             CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +-..+..++.++++++.+|+++|.+=.=.+.+-...|..+|||.+-+|
T Consensus       130 ~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG  177 (352)
T PF00478_consen  130 HGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG  177 (352)
T ss_dssp             STTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred             CccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence            345667888899999998877776555578899999999999999998

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=92.37  E-value=0.3  Score=35.16  Aligned_cols=45  Identities=18%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ......+-|+++++..|+.++.+ +=+ +.+.+..+.++|+|.+.+|
T Consensus       123 h~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458        123 HSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENAGADATKVG  168 (326)
T ss_pred             chHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHcCcCEEEEC
Confidence            34456666888998887777666 223 8999999999999998866

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=92.27  E-value=1.4  Score=32.80  Aligned_cols=77  Identities=8%  Similarity=0.032  Sum_probs=53.1

Q ss_pred             CCCCCCCC-CCcchHHHHHHHHHh-----CCCCcEEEEcCCCcccHHHH-HHcC-CCEEEE-eccccC-CCCHHHHHHHH
Q psy11601          4 EPGFGGQK-FMQDMMPKVKWLREN-----YPTLNIEVDGGVGPNTIDEC-AKAG-ANWIVS-GTAVIN-CPDRIQAISTL   73 (82)
Q Consensus         4 ~pG~~gq~-~~~~~~~ki~~~~~~-----~~~~~i~~dGGI~~~ni~~~-~~~G-ad~vv~-gs~i~~-~~d~~~~~~~l   73 (82)
                      -|++.|.. +.++....+.+....     ...+-=+..||+++..++++ ...| .|.+.. |..|++ ++.+++-++.+
T Consensus       300 ~~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~  379 (406)
T cd08207         300 VNGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSL  379 (406)
T ss_pred             cCCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHH
Confidence            46666653 445444455443321     12344678999999999966 5677 588777 688999 57799999999


Q ss_pred             HHHHHHh
Q psy11601         74 KSSVQKY   80 (82)
Q Consensus        74 ~~~~~~~   80 (82)
                      ++.++..
T Consensus       380 rqA~ea~  386 (406)
T cd08207         380 RQAWEAA  386 (406)
T ss_pred             HHHHHHH
Confidence            9988753

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=91.95  E-value=0.59  Score=34.11  Aligned_cols=52  Identities=17%  Similarity=0.360  Sum_probs=41.3

Q ss_pred             HHHHHHhCCCCcEEEEcC-CCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGG-VGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      ..+++... ..|+.+.|+ -+++.+.++++.| ||.|.+|+.+...+|+...+++
T Consensus       280 a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~  333 (363)
T COG1902         280 AARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAE  333 (363)
T ss_pred             HHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHc
Confidence            44455544 489999996 4788999999998 9999999999988888766643

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=91.92  E-value=0.45  Score=36.08  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .....++.|+++++..|+.+|++-+=.+.+....+.++|||.+++|
T Consensus       272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg  317 (505)
T PLN02274        272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVG  317 (505)
T ss_pred             CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence            4456678899999988777776666678999999999999999875

>PLN02363 phosphoribosylanthranilate isomerase

Probab=91.90  E-value=0.57  Score=32.61  Aligned_cols=49  Identities=18%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC----CCHHHHHHHHHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC----PDRIQAISTLKSSVQ   78 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~----~d~~~~~~~l~~~~~   78 (82)
                      ..|+...||++++|+.+... .++.++=+.|.+=..    .|+ +.+++|.+.++
T Consensus       199 ~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD~-~KI~~fv~~vr  252 (256)
T PLN02363        199 RNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGICGPDGIRKDP-SKISSFISAVK  252 (256)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCcEEEeCCcccCCCCcccCH-HHHHHHHHHHH
Confidence            35899999999999999875 688888888887543    333 35555555544

>KOG2550|consensus

Probab=91.50  E-value=0.38  Score=36.13  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|--+...++.|+.+++.+|++.|.+--.++.+-.+.|+.+|||++=+|
T Consensus       272 SqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG  320 (503)
T KOG2550|consen  272 SQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG  320 (503)
T ss_pred             CCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec
Confidence            4667778899999999999888777777789999999999999998766

>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C

Probab=91.45  E-value=0.29  Score=34.23  Aligned_cols=55  Identities=22%  Similarity=0.357  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhCCCCcEEEE--------cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVD--------GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~d--------GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .+.|.++++.+ ++.+++.        =||+++...+|.++|+|.+-+|--+|...|+.+.+.+
T Consensus        16 ~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~   78 (253)
T PF13277_consen   16 KEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDK   78 (253)
T ss_dssp             HHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH
T ss_pred             HHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhc
Confidence            34456666653 3444443        2799999999999999999999999998887766654

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=91.40  E-value=1.5  Score=31.92  Aligned_cols=61  Identities=18%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe----ccccCCCCHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG----TAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g----s~i~~~~d~~~~~~~l~~~~   77 (82)
                      ..+.|+++++.. +.||.+=|-.+++.+..+.++|+|.|++.    +.+...+..-+.+.++.+.+
T Consensus       209 ~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~  273 (351)
T cd04737         209 SPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV  273 (351)
T ss_pred             CHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence            567788888775 58999998889999999999999999983    33443333334444554433

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A

Probab=91.23  E-value=0.52  Score=33.79  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCCC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINCP   64 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~~   64 (82)
                      +++.|++.+|++.+.+.++.+.|  +|.+-+|+.+.+..
T Consensus       277 ~~~~Iv~Sdgld~~~i~~l~~~g~~~d~fGvGt~L~~~~  315 (327)
T cd01570         277 TKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQ  315 (327)
T ss_pred             CCcEEEEeCCCCHHHHHHHHHCCCeeEEEecCccccCCC
Confidence            56899999999999999999988  88999999988743

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=91.22  E-value=0.33  Score=33.62  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CCCCCcchHHHHHHHHHhC-CCCcEEEEcCCCcccHHHH-HHcCCCEEEE
Q psy11601          9 GQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDEC-AKAGANWIVS   56 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~-~~~Gad~vv~   56 (82)
                      |..--.+.+++|+++.++. ..+.|.+-|||+++|+..+ ...|+.-+=.
T Consensus       150 g~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H~  199 (241)
T COG3142         150 GKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVHG  199 (241)
T ss_pred             CcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhhhh
Confidence            3344467778888876653 4688999999999999999 6777765533

>TIGR00419 tim triosephosphate isomerase

Probab=91.09  E-value=0.47  Score=32.03  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             CCCCCcchHHHHHHHHH----hCCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCC
Q psy11601          9 GQKFMQDMMPKVKWLRE----NYPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINC   63 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~----~~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~   63 (82)
                      |+.-.++..+.+.+..+    ..++++|.-=|+|+++|+.++. +.++|++-+|++..++
T Consensus       145 G~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a  204 (205)
T TIGR00419       145 GIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA  204 (205)
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence            44445555555554322    2346899999999999999874 6689999999987753

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.03  E-value=0.51  Score=35.78  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+||.+||||+. ..+...+.+|||.+.+|+.+-+
T Consensus       352 ~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag  386 (502)
T PRK07107        352 YIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR  386 (502)
T ss_pred             cceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence            489999999975 4566777899999999999876

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=90.98  E-value=1.5  Score=30.31  Aligned_cols=68  Identities=15%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             CCCCCCCCcchHHHHHHHH----------HhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLR----------ENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~----------~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      |...+++.+..+.-|.+..          +.. ++|+...-|++.=+++....+||.++-+||++-+-+|..+.+..++
T Consensus       154 gtss~p~~~g~lglIekaapTLAaay~ISr~v-~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMva~vr  231 (242)
T PF04481_consen  154 GTSSKPTSPGILGLIEKAAPTLAAAYAISRAV-SIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRLNDEVAMVAAVR  231 (242)
T ss_pred             CCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc-CCceEeccCcchhhHHHHHHcCCcccchhHHhhhcccHHHHHHHHH
Confidence            4455566666666665532          222 6999999999999999999999999999999998777654444443

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK08185 hypothetical protein; Provisional

Probab=90.86  E-value=2.4  Score=30.02  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC--CcccHHHHHHcCCCEEEEecccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV--GPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI--~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .++.|+++++.. ++|++.-||+  ..+.++...+.|+.-|=+++.+.
T Consensus       186 ~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~  232 (283)
T PRK08185        186 QMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMK  232 (283)
T ss_pred             CHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence            388888888775 6999999986  56889999999999999988875

>KOG2550|consensus

Probab=90.72  E-value=0.3  Score=36.64  Aligned_cols=45  Identities=18%  Similarity=0.284  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +=+..+....+ .+|+.+|||| +...+...+..||+.+.+|+.+-+
T Consensus       343 Vy~va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAg  388 (503)
T KOG2550|consen  343 VYKVAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAG  388 (503)
T ss_pred             hhhHHHHHHhc-CCceeecCCcCccchhHhhhhcCchhheecceeee
Confidence            33455544444 5899999999 567888888999999999988765

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=90.52  E-value=0.71  Score=36.42  Aligned_cols=47  Identities=13%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             HHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHH
Q psy11601         20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRI   67 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~   67 (82)
                      .+++++.. ++|+.+.|+| +++.+.++++.| +|.|.+|+.+...+++.
T Consensus       679 ~~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~  727 (765)
T PRK08255        679 ADRIRNEA-GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWT  727 (765)
T ss_pred             HHHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHH
Confidence            34566654 5899999999 778899999866 99999999998877763

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=90.45  E-value=0.67  Score=33.75  Aligned_cols=47  Identities=19%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.-+.+..+.  .+.+||.+||||+. .++...+.+|||.+.+|+.+-+
T Consensus       197 qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG  246 (343)
T TIGR01305       197 QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG  246 (343)
T ss_pred             HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence            45555554432  23689999999975 4677777899999999977765

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=90.32  E-value=0.89  Score=30.70  Aligned_cols=44  Identities=25%  Similarity=0.413  Sum_probs=34.3

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|..++-|+++++.+|++. +-.|. .+.+.++...++||+++|+-
T Consensus        43 t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~FivsP   87 (204)
T TIGR01182        43 TPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQFIVSP   87 (204)
T ss_pred             CccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEECC
Confidence            4778888999998877643 44444 57899999999999998654

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>KOG0538|consensus

Probab=90.31  E-value=1.6  Score=31.71  Aligned_cols=67  Identities=22%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             CCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec-cccCCCCHHHHHHHHHHHH
Q psy11601         10 QKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT-AVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs-~i~~~~d~~~~~~~l~~~~   77 (82)
                      |.-..-.++.|+.+++.- ++||++-|=.+.+.+....++|++++++.. .=-+-|...+++..|.+.+
T Consensus       205 ~id~Sl~W~Di~wLr~~T-~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv  272 (363)
T KOG0538|consen  205 QIDPSLSWKDIKWLRSIT-KLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVV  272 (363)
T ss_pred             CCCCCCChhhhHHHHhcC-cCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHH
Confidence            333456788899999986 799999999999999999999999999873 2222233334555555544

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=90.28  E-value=0.82  Score=32.94  Aligned_cols=47  Identities=21%  Similarity=0.409  Sum_probs=37.3

Q ss_pred             CCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEe
Q psy11601         10 QKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~g   57 (82)
                      +-.+...++.|+++++..| .++.+.|+| +.+.+..+.++|||.+.++
T Consensus       118 hg~s~~~~~~i~~i~~~~p-~~~vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306       118 HGHSNSVINMIKHIKTHLP-DSFVIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             cCchHHHHHHHHHHHHhCC-CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence            4455678899999999874 566777744 6778889999999999877

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=90.16  E-value=3.2  Score=25.98  Aligned_cols=52  Identities=19%  Similarity=0.176  Sum_probs=34.3

Q ss_pred             HHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         23 LRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        23 ~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +++... ++++.+=|.+-.+...++.++|+|.+.-     -..++.+.++.+.+.+.+
T Consensus        77 L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~-----~gt~~~~i~~~l~~~~~~  129 (132)
T TIGR00640        77 LDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG-----PGTPIPESAIFLLKKLRK  129 (132)
T ss_pred             HHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC-----CCCCHHHHHHHHHHHHHH
Confidence            444333 4566665557777899999999987632     234677777777776644

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=89.93  E-value=0.67  Score=31.72  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      |.++.+.++.+...    -|+..-|||.. +.+..+...|++++.++++|+....|-+.+
T Consensus       168 ~~~E~l~~~~~~s~----~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~  223 (229)
T COG1411         168 PDYELLTKVLELSE----HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE  223 (229)
T ss_pred             CCHHHHHHHHHhcc----CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHH
Confidence            55555555554433    47899999986 455555669999999999999877765444

>KOG1436|consensus

Probab=89.91  E-value=0.87  Score=33.28  Aligned_cols=65  Identities=25%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc-CCCCHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI-NCPDRIQAI   70 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~-~~~d~~~~~   70 (82)
                      |-.|.+.-|-.++.++++..+ .+++||.-.|||+- +..-+-+.+||..+=+.+++. ..+-+.+.+
T Consensus       307 GLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kI  374 (398)
T KOG1436|consen  307 GLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKI  374 (398)
T ss_pred             CCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHH
Confidence            456788889999999998875 57899999999964 567788999999999998864 344444444

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=89.85  E-value=0.87  Score=33.29  Aligned_cols=42  Identities=21%  Similarity=0.436  Sum_probs=36.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      -.++.|+++++.. +.|+.+-|=++.+++..+.++|+|+|+++
T Consensus       223 ~~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         223 FNWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILS  264 (361)
T ss_pred             CCHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEEC
Confidence            3567899999886 57888889899999999999999999865

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=89.82  E-value=0.93  Score=34.23  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ....++.|+++++.+|+++|.+=-=.|.+....+.++|||.+-+|
T Consensus       252 ~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg  296 (479)
T PRK07807        252 QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG  296 (479)
T ss_pred             cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence            667788899999988776665523347888999999999999733

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=89.73  E-value=0.91  Score=33.28  Aligned_cols=43  Identities=26%  Similarity=0.280  Sum_probs=38.3

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .-..+.|+++++.- ++||.+=|=.+.+.+..+.++|+|+|++.
T Consensus       210 ~~tW~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~Vs  252 (367)
T PLN02493        210 TLSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVS  252 (367)
T ss_pred             CCCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEEC
Confidence            34678899999876 68999999999999999999999999887

>PLN02979 glycolate oxidase

Probab=89.69  E-value=0.99  Score=33.14  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      +-..+.|+++++.- ++||.+=|=.+.+.+..+.++|+|.|+++.
T Consensus       209 ~ltW~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsn  252 (366)
T PLN02979        209 TLSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSN  252 (366)
T ss_pred             CCCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECC
Confidence            34678899999876 689999999999999999999999998873

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=89.59  E-value=1  Score=30.32  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|..++-|+++++.++++. .-.|. ++.+.++...++||+++|+=
T Consensus        39 tp~a~~~I~~l~~~~~~~~-vGAGTVl~~e~a~~ai~aGA~FivSP   83 (201)
T PRK06015         39 TPAALDAIRAVAAEVEEAI-VGAGTILNAKQFEDAAKAGSRFIVSP   83 (201)
T ss_pred             CccHHHHHHHHHHHCCCCE-EeeEeCcCHHHHHHHHHcCCCEEECC
Confidence            4778888999988776643 44444 58899999999999998754

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=89.47  E-value=0.82  Score=33.06  Aligned_cols=42  Identities=17%  Similarity=0.168  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHhCCCCcEEE---EcCCCcccHHHHHHcCCCEEEEec
Q psy11601         16 MMPKVKWLRENYPTLNIEV---DGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~---dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .++.|+++++.. ++||.+   -.|.+.+.+..+.++|+|.++++.
T Consensus       174 ~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg  218 (352)
T PRK05437        174 WLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG  218 (352)
T ss_pred             HHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence            446788887765 578776   356999999999999999999854

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=89.42  E-value=0.94  Score=32.32  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEc---CCCcccHHHHHHcCCCEEEEec
Q psy11601         16 MMPKVKWLRENYPTLNIEVDG---GVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dG---GI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .++.|+.+++.. ++||.+=+   |.+.+.+..+.++|+|.+++.+
T Consensus       166 ~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG  210 (326)
T cd02811         166 WLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG  210 (326)
T ss_pred             HHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            446788887765 57877743   4889999999999999999754

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=89.36  E-value=1.3  Score=30.96  Aligned_cols=52  Identities=23%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             HHHHHHHhCCCCcEEE-----EcCCCcccHHHHH-HcCCC-EEEEeccccCCCCHHHHHH
Q psy11601         19 KVKWLRENYPTLNIEV-----DGGVGPNTIDECA-KAGAN-WIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~-----dGGI~~~ni~~~~-~~Gad-~vv~gs~i~~~~d~~~~~~   71 (82)
                      .++++|+..+++++.+     -|| +.+....+. ..|++ .+++|+.|+.+.||.+.++
T Consensus       200 e~~~iR~~~~~~~il~PGigaqG~-~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~  258 (261)
T TIGR02127       200 DLLRLRIEMPTAPFLVPGFGAQGA-EAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV  258 (261)
T ss_pred             HHHHHHHhCCCCeEEeCCcCCCCC-CHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence            3445554444554333     233 455555544 35788 7999999999999876654

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>COG1692 Calcineurin-like phosphoesterase [General function prediction only]

Probab=89.30  E-value=0.96  Score=31.78  Aligned_cols=54  Identities=19%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEc--------CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDG--------GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dG--------GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      ..+.|.++++.+ ++.+++..        ||+++...+++++|||.+-+|--.|..+|+-+-+
T Consensus        18 v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i   79 (266)
T COG1692          18 VKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFI   79 (266)
T ss_pred             HHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHh
Confidence            344455566553 45555554        6899999999999999999999999877665443

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=89.25  E-value=1.2  Score=32.26  Aligned_cols=63  Identities=21%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc----ccCCCCHHHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA----VINCPDRIQAISTLKSS   76 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~----i~~~~d~~~~~~~l~~~   76 (82)
                      .....+.|+++++.. +.|+.+=|-.+.+.+..+.++|+|.|++...    +-....+...+.++.+.
T Consensus       198 ~~~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~  264 (344)
T cd02922         198 PTLTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKH  264 (344)
T ss_pred             CCCCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHH
Confidence            345678899998876 5899998888999999999999999998742    11123344455555543

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=89.24  E-value=1  Score=33.20  Aligned_cols=62  Identities=21%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc----ccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA----VINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~----i~~~~d~~~~~~~l~~~~   77 (82)
                      -.++.|+++++.. +.|+.+=|=.+.+.+..+.++|+|.|++...    +-....+...+.++++.+
T Consensus       240 ~tW~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~  305 (383)
T cd03332         240 LTWEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV  305 (383)
T ss_pred             CCHHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh
Confidence            4578899999876 5899999999999999999999999997621    211223344555555443

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=89.14  E-value=1  Score=30.21  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|..++-|+++++.+|++.|=+=.=++.+.++...++||+++|+=
T Consensus        43 t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP   87 (196)
T PF01081_consen   43 TPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP   87 (196)
T ss_dssp             STTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES
T ss_pred             CccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC
Confidence            367788888888877776444434458899999999999998764

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=88.79  E-value=0.99  Score=32.76  Aligned_cols=63  Identities=21%  Similarity=0.417  Sum_probs=45.1

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec-c---ccCCCCHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT-A---VINCPDRIQAISTLKSSV   77 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs-~---i~~~~d~~~~~~~l~~~~   77 (82)
                      ...+++|+++++.. ++||.+=|=++.+.+..+.++|++.|.++. .   +=....+.+.+-++++.+
T Consensus       211 ~~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~  277 (356)
T PF01070_consen  211 SLTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV  277 (356)
T ss_dssp             T-SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh
Confidence            35678899999886 689999999999999999999999988872 2   222345556666666544

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=88.11  E-value=1.7  Score=28.39  Aligned_cols=44  Identities=20%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEc---CCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDG---GVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dG---GI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +..++-|+++++.+++..+.+|=   ++....++.+.++|||.+++-
T Consensus        37 ~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh   83 (206)
T TIGR03128        37 NEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL   83 (206)
T ss_pred             HhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence            44577788888876555555432   222336889999999988744

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional

Probab=88.08  E-value=4.2  Score=27.13  Aligned_cols=59  Identities=8%  Similarity=0.016  Sum_probs=38.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccH-HHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTI-DECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni-~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..|+++|.+--+-+ ...+ ..+.++||++|     +.++.++.+-++.++..+.
T Consensus        54 ~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gy-----l~K~~~~~eL~~aI~~v~~  114 (207)
T PRK11475         54 EGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGV-----LSKASTLEILQQELFLSLN  114 (207)
T ss_pred             CHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEE-----EecCCCHHHHHHHHHHHHC
Confidence            4678889998888888877765544 3323 33447999987     3455566666666665443

>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases

Probab=87.88  E-value=5.2  Score=25.50  Aligned_cols=71  Identities=11%  Similarity=-0.005  Sum_probs=46.2

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc-ccCCCCHHHHHHHHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA-VINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~-i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +....+..++-+...+++...+...+.|.-..+...++...|+|-++.... -+...++....+.+.+.+++
T Consensus        10 ~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~   81 (168)
T cd01715          10 NGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKK   81 (168)
T ss_pred             CCChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHh
Confidence            344666777777777776445677777876555688889999999888642 33334555555555555443

ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=87.77  E-value=1.4  Score=31.60  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHhCCCCcEEE---EcCCCcccHHHHHHcCCCEEEEec
Q psy11601         16 MMPKVKWLRENYPTLNIEV---DGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~---dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .++.|+.+++.. ++||.+   -.|.+.+.+..+.++|+|.+++++
T Consensus       167 ~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg  211 (333)
T TIGR02151       167 WLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG  211 (333)
T ss_pred             HHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            457788888765 578776   345889999999999999999975

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PLN02535 glycolate oxidase

Probab=87.75  E-value=1.4  Score=32.23  Aligned_cols=43  Identities=19%  Similarity=0.282  Sum_probs=37.8

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +-.++.|+++++.. +.||.+=|=.+.+.+..+.++|+|.|++.
T Consensus       209 ~~tW~~i~~lr~~~-~~PvivKgV~~~~dA~~a~~~GvD~I~vs  251 (364)
T PLN02535        209 SLSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVS  251 (364)
T ss_pred             CCCHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHhcCCCEEEEe
Confidence            34678889998874 68999999999999999999999999886

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=87.72  E-value=1.8  Score=28.31  Aligned_cols=44  Identities=30%  Similarity=0.462  Sum_probs=32.7

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEec
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs   58 (82)
                      +...+-++++++..+++ ....|.+. .++++.+.++|+|+++++.
T Consensus        40 ~~~~~~i~~l~~~~~~~-~iGag~v~~~~~~~~a~~~Ga~~i~~p~   84 (190)
T cd00452          40 PGALEAIRALRKEFPEA-LIGAGTVLTPEQADAAIAAGAQFIVSPG   84 (190)
T ss_pred             hhHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence            44667788888876543 34445555 9999999999999998763

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=86.79  E-value=1.4  Score=30.04  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=34.4

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEE
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~   56 (82)
                      .|...+-|+++++.+|++.|=+=-=++++.+.++.++|++++|+
T Consensus        48 sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs   91 (211)
T COG0800          48 TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS   91 (211)
T ss_pred             CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence            47788899999998875433333336899999999999998875

>PRK12484 nicotinate phosphoribosyltransferase; Provisional

Probab=86.69  E-value=2.3  Score=31.85  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVIN   62 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~   62 (82)
                      +++.|++.+|++.+.+.++.+.|  +|.|-+|+.+..
T Consensus       278 ~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~  314 (443)
T PRK12484        278 EQVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGV  314 (443)
T ss_pred             CCcEEEEeCCCCHHHHHHHHHCCCcCeEEeeCccccc
Confidence            57899999999999999999988  899999999865

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=86.18  E-value=2.1  Score=27.77  Aligned_cols=44  Identities=27%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcc---cHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPN---TIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~---ni~~~~~~Gad~vv~g   57 (82)
                      +..++-++++++..+++++.+++=+..-   .++.+.++|+|++++-
T Consensus        38 ~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h   84 (202)
T cd04726          38 SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVL   84 (202)
T ss_pred             HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEE
Confidence            4456778888887667777766554433   3678899999998865

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=86.01  E-value=4.7  Score=28.01  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      ..++.++++|+..+++|+++-+=.|+       +.++.+.++|+|++++-      |=|-+..+++.+..+
T Consensus        75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip------DLp~ee~~~~~~~~~  139 (258)
T PRK13111         75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP------DLPPEEAEELRAAAK  139 (258)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC------CCCHHHHHHHHHHHH
Confidence            56777888885556788888884432       45889999999999984      333455555555444

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=85.95  E-value=6.8  Score=27.45  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+.++++++.. +.|+.+=+=.+.+.+..+.++|+|.|++.
T Consensus       160 ~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~  200 (299)
T cd02809         160 TWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVS  200 (299)
T ss_pred             CHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence            456778888765 37888777789999999999999999885

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]

Probab=85.94  E-value=2.8  Score=26.49  Aligned_cols=50  Identities=16%  Similarity=0.275  Sum_probs=38.7

Q ss_pred             CcEEEEcCCCcccHHHHHHcCCCEEEEecccc-------CCCCHHHHHHHHHHHHHH
Q psy11601         30 LNIEVDGGVGPNTIDECAKAGANWIVSGTAVI-------NCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        30 ~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~-------~~~d~~~~~~~l~~~~~~   79 (82)
                      +++.-.|-++++-+....+.|||+|.++..=.       +.-..+..++-+++.+++
T Consensus        33 Irv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~e   89 (132)
T COG1908          33 IRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKE   89 (132)
T ss_pred             EEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHH
Confidence            56888999999999999999999998876533       233455677777777665

>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase

Probab=85.90  E-value=1.9  Score=32.34  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVIN   62 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~   62 (82)
                      +++.|.+.||++.+.+.++.+.|  +|.|-+|+.+..
T Consensus       276 ~~vkIi~S~gLde~~i~~l~~~g~~~d~fGvGt~L~t  312 (443)
T TIGR01513       276 TQVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVT  312 (443)
T ss_pred             CCcEEEEeCCCCHHHHHHHHHCCCceeEEecCcceee
Confidence            56889999999999999999988  899999998874

Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.

>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=85.84  E-value=7.6  Score=28.78  Aligned_cols=52  Identities=8%  Similarity=0.213  Sum_probs=41.5

Q ss_pred             CCcEEEEcCCCcccHHHHHHc-CCCEEEEe-ccccC-CCCHHHHHHHHHHHHHHh
Q psy11601         29 TLNIEVDGGVGPNTIDECAKA-GANWIVSG-TAVIN-CPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~~-Gad~vv~g-s~i~~-~~d~~~~~~~l~~~~~~~   80 (82)
                      .+-=+..||+++..++++.+. |.|.+... ..|++ ++.+++-++.+++.++..
T Consensus       313 ~~~Pv~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~  367 (391)
T cd08209         313 GVFPVPSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAV  367 (391)
T ss_pred             CceEecCCCCChhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHH
Confidence            345678999999999977664 99977654 77998 567999999999887753

Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=85.82  E-value=2.1  Score=31.50  Aligned_cols=41  Identities=20%  Similarity=0.439  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+.|+++++.. +.|+.+=|=.+.+.+..+.++|+|.|+++
T Consensus       233 tW~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs  273 (381)
T PRK11197        233 SWKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVS  273 (381)
T ss_pred             CHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence            456688888876 58999999999999999999999999765

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=85.80  E-value=4.1  Score=27.42  Aligned_cols=50  Identities=20%  Similarity=0.146  Sum_probs=40.1

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHH
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSV   77 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~   77 (82)
                      .+..|.+.|=-+++++.+...+|+|.+-+.-.++.    .+-..+.++.|.+.+
T Consensus       156 ~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~d~  209 (211)
T cd00956         156 FDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLEDW  209 (211)
T ss_pred             CCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHHHh
Confidence            35789999999999999999999999999977654    555667777776543

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=85.66  E-value=5.8  Score=30.53  Aligned_cols=50  Identities=12%  Similarity=0.139  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccc-cCCCCHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAV-INCPDRI   67 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i-~~~~d~~   67 (82)
                      ++-++++++.. ++|+.+.||+ +++.+.++.. .||+...++|.+ |..-++.
T Consensus       471 ~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~  523 (538)
T PLN02617        471 IELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPIS  523 (538)
T ss_pred             HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHH
Confidence            44455555554 6899999987 5788888886 678987777665 3333443

>PRK09243 nicotinate phosphoribosyltransferase; Validated

Probab=85.54  E-value=2.4  Score=31.93  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINC   63 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~   63 (82)
                      +++.|++.||++.+.+.++...|  +|.|-+|+.+..+
T Consensus       285 ~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~  322 (464)
T PRK09243        285 TDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVTG  322 (464)
T ss_pred             CCcEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccCC
Confidence            57889999999999999999777  5999999998764

>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria

Probab=85.47  E-value=4.8  Score=22.73  Aligned_cols=50  Identities=16%  Similarity=0.235  Sum_probs=36.9

Q ss_pred             HHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         19 KVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      ++.++... .++.+++.|+|...-...+.+.|+..+..     ...++.+.++++.
T Consensus        44 ~~~~~l~~-~~v~~li~~~iG~~~~~~L~~~gI~v~~~-----~~~~i~~~l~~~~   93 (94)
T PF02579_consen   44 KIAKFLAE-EGVDVLICGGIGEGAFRALKEAGIKVYQG-----AGGDIEEALEAYL   93 (94)
T ss_dssp             HHHHHHHH-TTESEEEESCSCHHHHHHHHHTTSEEEES-----TSSBHHHHHHHHH
T ss_pred             hHHHHHHH-cCCCEEEEeCCCHHHHHHHHHCCCEEEEc-----CCCCHHHHHHHHh
Confidence            34443333 36899999999999999999999998764     3456666666654

The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.

>KOG4201|consensus

Probab=85.34  E-value=1.6  Score=30.46  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=37.8

Q ss_pred             CcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         30 LNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        30 ~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      +.+++--| -+++.+..+.++|+..|.+|-++.++.||+..+.+|.
T Consensus       238 vilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~  283 (289)
T KOG4201|consen  238 VILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELF  283 (289)
T ss_pred             eEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHh
Confidence            44444444 5799999999999999999999999999998888775

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=85.34  E-value=6.2  Score=26.21  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCCCcEE------------EEcCCCcccHHHHHHcCCCEEEEeccccC-C--CCHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIE------------VDGGVGPNTIDECAKAGANWIVSGTAVIN-C--PDRIQAISTLKS   75 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~------------~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-~--~d~~~~~~~l~~   75 (82)
                      .+.++++++.. ++|+.            ..++ +.+.+.++.++|||.++....... +  ....+.++.+++
T Consensus        45 ~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~-~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~  116 (221)
T PRK01130         45 VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITP-TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE  116 (221)
T ss_pred             HHHHHHHHHhC-CCCEEEEEecCCCCCCceECC-CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence            55666666542 34442            3333 556799999999998887765432 2  344444444443

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=85.33  E-value=5.2  Score=27.12  Aligned_cols=64  Identities=14%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        16 ~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~   79 (82)
                      .++-++++++.    .++.+|.+..=-+.+++.++..+|+|.+-+.-.++.    .+-....++.|.+-+++
T Consensus       140 g~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~~~  211 (213)
T TIGR00875       140 GMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDWNA  211 (213)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence            45555554443    357888888888888888888999999998877654    55567788888776553

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=85.12  E-value=2.4  Score=30.97  Aligned_cols=40  Identities=20%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ...+.++.+.. ++||.+=+-.+.+.+..+.++|||.|.+|
T Consensus       176 ~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG  215 (368)
T PRK08649        176 PLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVG  215 (368)
T ss_pred             HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence            45556655544 68887733456677888999999999888

>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family

Probab=85.01  E-value=2.3  Score=29.80  Aligned_cols=48  Identities=17%  Similarity=0.279  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhCCCCcEEE-------Ec-CCCcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         17 MPKVKWLRENYPTLNIEV-------DG-GVGPNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~-------dG-GI~~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      -+.|.++++.++ ..+++       .| |++.+.+.++.++|+|.+.+|-=.|...+
T Consensus        19 ~~~L~~lk~~~~-~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~GNH~~Dkge   74 (266)
T TIGR00282        19 KNNLPQLKSKYQ-ADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMGNHTWFQKL   74 (266)
T ss_pred             HHHHHHHHHhCC-CCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEccchhccCcH
Confidence            344666666542 23333       34 69999999999999999999977886554

A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.

>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []

Probab=84.98  E-value=1.9  Score=26.77  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=37.2

Q ss_pred             CcEEEEcCCCcccHHHHHHcCCCEEEEeccccC-------CCCHHHHHHHHHHHHHH
Q psy11601         30 LNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN-------CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        30 ~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-------~~d~~~~~~~l~~~~~~   79 (82)
                      +++--.|-|++..+......|||+|.+...=.+       ....++.++.+++.+++
T Consensus        32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~   88 (124)
T PF02662_consen   32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEE   88 (124)
T ss_pred             EEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            557789999999999999999999999554432       22345666777766654

No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process

>TIGR00433 bioB biotin synthetase

Probab=84.93  E-value=9.3  Score=26.26  Aligned_cols=72  Identities=21%  Similarity=0.200  Sum_probs=41.7

Q ss_pred             cCCCCCCCCCCc----chHHHHHHHHHhCCCCcEEEEcCCC---cccHHH-HHHcCCCEEEEeccccC-CCCHH-HHHHH
Q psy11601          3 VEPGFGGQKFMQ----DMMPKVKWLRENYPTLNIEVDGGVG---PNTIDE-CAKAGANWIVSGTAVIN-CPDRI-QAIST   72 (82)
Q Consensus         3 v~pG~~gq~~~~----~~~~ki~~~~~~~~~~~i~~dGGI~---~~ni~~-~~~~Gad~vv~gs~i~~-~~d~~-~~~~~   72 (82)
                      ..||..=+.+.+    +.++.+..++...|+..|-+.|+=.   .+.... .+.+|||.+++|.++.. ...+. +.++-
T Consensus       211 p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~~~~~~~  290 (296)
T TIGR00433       211 KIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKL  290 (296)
T ss_pred             EcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCCCcHHHHHH
Confidence            345654333443    3334455556666766677777743   122233 58999999999999875 33444 44444


Q ss_pred             HH
Q psy11601         73 LK   74 (82)
Q Consensus        73 l~   74 (82)
                      ++
T Consensus       291 ~~  292 (296)
T TIGR00433       291 LA  292 (296)
T ss_pred             HH
Confidence            43

Catalyzes the last step of the biotin biosynthesis pathway.

>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]

Probab=84.82  E-value=0.97  Score=31.19  Aligned_cols=63  Identities=24%  Similarity=0.369  Sum_probs=38.4

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ||+-|=.....-....+.+++++++.    ++++ -...=|.+- ..+..+++|+..|=+||+||++.+
T Consensus       161 M~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~-~~LSMGMS~-D~e~AI~~GaT~VRIGtaiFg~r~  227 (228)
T COG0325         161 MTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPI-DELSMGMSN-DYEIAIAEGATMVRIGTAIFGARD  227 (228)
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CeecCcCcc-cHHHHHHcCCCEEEEcHHhhCCCC
Confidence            55555433333334556666665432    2211 234445443 477888999999999999998754

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=84.82  E-value=5.5  Score=27.56  Aligned_cols=44  Identities=14%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~g   57 (82)
                      ...++-++++++...++|+..-+=-|+       +-+..+.++|+|++++-
T Consensus        72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip  122 (256)
T TIGR00262        72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA  122 (256)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence            356777888887544678777777776       44889999999998775

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK01362 putative translaldolase; Provisional

Probab=84.50  E-value=6.2  Score=26.77  Aligned_cols=64  Identities=22%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        16 ~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~   79 (82)
                      .++-++++++.    .++..|.+..=-+.+++.++..+|+|.+-+.-.++.    .+-..+.++.|.+.+++
T Consensus       140 g~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~~  211 (214)
T PRK01362        140 GMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADWEK  211 (214)
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            44444444432    346788888888888888888999999888866654    55667888888776654

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=84.46  E-value=3.4  Score=25.11  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=26.0

Q ss_pred             HHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         20 VKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        20 i~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ++++++..+ ++++.+-|....+...++.++|+|.+.-.
T Consensus        71 ~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~  109 (122)
T cd02071          71 IELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP  109 (122)
T ss_pred             HHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence            334555533 56666666677778899999999877533

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>TIGR02663 nifX nitrogen fixation protein NifX

Probab=84.28  E-value=6.1  Score=23.99  Aligned_cols=47  Identities=11%  Similarity=0.003  Sum_probs=38.1

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .++.+++.|||...-...+.+.|+..+..+.    ...+.+.+++|.+.+.
T Consensus        62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~~~----~~~v~eal~~l~~~~~  108 (119)
T TIGR02663        62 KDCAILYCLAIGGPAAAKVVAAKIHPIKVNE----PESISELLERLQKMLK  108 (119)
T ss_pred             CCCcEEEEhhcCccHHHHHHHcCCeeEecCC----CccHHHHHHHHHHHHc
Confidence            3799999999999999999999999875532    2457788888887764

Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=84.22  E-value=7.5  Score=26.62  Aligned_cols=63  Identities=17%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC---C----cccHHHHHHcCCCEEEEeccccCC----------CCHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV---G----PNTIDECAKAGANWIVSGTAVINC----------PDRIQAISTLKSS   76 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI---~----~~ni~~~~~~Gad~vv~gs~i~~~----------~d~~~~~~~l~~~   76 (82)
                      .+.+..++.+.+.. ++|+.+|+-.   +    .+|++.+.++|++++.+--..+..          -++.+.+++++..
T Consensus        55 ~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa  133 (243)
T cd00377          55 DEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAA  133 (243)
T ss_pred             HHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHH
Confidence            45666666666654 6899999877   3    345678889999999994333321          1455555555544


Q ss_pred             H
Q psy11601         77 V   77 (82)
Q Consensus        77 ~   77 (82)
                      .
T Consensus       134 ~  134 (243)
T cd00377         134 R  134 (243)
T ss_pred             H
Confidence            3

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=84.18  E-value=1.3  Score=31.84  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             CCcEEEEcCC-CcccHHHHHHcCC--------CEEEEeccccC
Q psy11601         29 TLNIEVDGGV-GPNTIDECAKAGA--------NWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI-~~~ni~~~~~~Ga--------d~vv~gs~i~~   62 (82)
                      ++|+.+.||| +...+......||        +++.+|+.+..
T Consensus       165 ~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~  207 (320)
T cd04743         165 KIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLF  207 (320)
T ss_pred             CccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhc
Confidence            6999999999 5555677888888        79999988654

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e

Probab=84.13  E-value=2.1  Score=29.28  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=17.1

Q ss_pred             CCcEEEEcCCCcccHHHH----HHcCCCEEE
Q psy11601         29 TLNIEVDGGVGPNTIDEC----AKAGANWIV   55 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~----~~~Gad~vv   55 (82)
                      .++++-.|||+.+|++++    +++|+..++
T Consensus       177 g~~lEPTGGIdl~N~~~I~~i~l~aGv~~vi  207 (218)
T PF07071_consen  177 GFTLEPTGGIDLDNFEEIVKICLDAGVEKVI  207 (218)
T ss_dssp             T-EEEEBSS--TTTHHHHHHHHHHTT-S-B-
T ss_pred             CceeCCcCCcCHHHHHHHHHHHHHcCCCeec
Confidence            689999999999999865    456766553

g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=84.11  E-value=6.4  Score=27.05  Aligned_cols=60  Identities=13%  Similarity=0.294  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ...+.++++.+.. +.|+.+.-+=..-++++|.+.|++.++.+..++.     ..+..+++.++++
T Consensus       178 ~~~~~i~~~~~~~-~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~-----aa~~a~~~~~~~i  237 (238)
T PF13714_consen  178 QSEEEIERIVKAV-DGPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR-----AAMKAMRDAAEAI  237 (238)
T ss_dssp             SSHHHHHHHHHHH-SSEEEEETTSSSS-HHHHHHTTESEEEETSHHHH-----HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH-----HHHHHHHHHHHhc
Confidence            3445577766655 4777776653348899999999999999987774     3555555555544

...

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.08  E-value=6.4  Score=28.75  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-----------------------CcccHHHHHHcCCCEEEEecccc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-----------------------GPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-----------------------~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      -.++++++|++..+++|++.=||-                       ..+++++..+.|+.-|=+++.+.
T Consensus       212 LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~  281 (347)
T PRK09196        212 LAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLR  281 (347)
T ss_pred             ccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence            367788888887657999999988                       44999999999999999988875

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=83.80  E-value=4.7  Score=29.26  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             HHHHHHHHhCCCCcEEE-EcCCCcc----cHHHHHHcCC--CEEEEeccccC
Q psy11601         18 PKVKWLRENYPTLNIEV-DGGVGPN----TIDECAKAGA--NWIVSGTAVIN   62 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~-dGGI~~~----ni~~~~~~Ga--d~vv~gs~i~~   62 (82)
                      +.++++.+.. +.|+++ .||.+.+    .+...+++|+  ++|.+|+.+|+
T Consensus       231 ~~f~~~~~a~-~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq  281 (340)
T PRK12858        231 KLFREQSDAT-DLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQ  281 (340)
T ss_pred             HHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence            4455555544 456555 8888665    4556778999  99999999997

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=83.53  E-value=4.3  Score=24.20  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEE
Q psy11601         17 MPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        17 ~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~   56 (82)
                      .+-++++++..+ +++|.+-|..-...-..+.+.|+|.++-
T Consensus        68 ~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~  108 (119)
T cd02067          68 KEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG  108 (119)
T ss_pred             HHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence            333455666655 5666666665555456788889887754

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=83.25  E-value=11  Score=28.07  Aligned_cols=76  Identities=11%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             CCCCCCCC--CcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEe-ccccC-CCCHHHHHHHHHH
Q psy11601          5 PGFGGQKF--MQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSG-TAVIN-CPDRIQAISTLKS   75 (82)
Q Consensus         5 pG~~gq~~--~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~g-s~i~~-~~d~~~~~~~l~~   75 (82)
                      |+.++-+|  .++....+.+....    ...+-=+..||+++..++++. ..|-|.+... ..|++ ++.+++-++.+++
T Consensus       305 ~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rq  384 (412)
T TIGR03326       305 GTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRA  384 (412)
T ss_pred             CCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCChhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHH
Confidence            44423344  35555556654432    123446789999999999765 5788876654 77998 5789999999998


Q ss_pred             HHHHh
Q psy11601         76 SVQKY   80 (82)
Q Consensus        76 ~~~~~   80 (82)
                      .++..
T Consensus       385 A~ea~  389 (412)
T TIGR03326       385 AIDAI  389 (412)
T ss_pred             HHHHH
Confidence            87653

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=83.19  E-value=3.3  Score=27.97  Aligned_cols=43  Identities=26%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             CcchHHHHHHHHHhCCCC--cEEEEcC-CCcccHHHHHHcCCCEEE
Q psy11601         13 MQDMMPKVKWLRENYPTL--NIEVDGG-VGPNTIDECAKAGANWIV   55 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~--~i~~dGG-I~~~ni~~~~~~Gad~vv   55 (82)
                      .|..++-|+++++.+++-  -+.-.|. .+.+.++...++||+++|
T Consensus        48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv   93 (213)
T PRK06552         48 NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV   93 (213)
T ss_pred             CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence            477888899998876321  2455555 478899999999999998

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=83.14  E-value=9.9  Score=27.93  Aligned_cols=62  Identities=19%  Similarity=0.192  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe----ccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG----TAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g----s~i~~~~d~~~~~~~l~~~~   77 (82)
                      -..+.|+++++.. ++||.+=|=-+.+.+..+.++|+|.|+++    +-++..+..-+.+.++++.+
T Consensus       215 ~~w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av  280 (367)
T TIGR02708       215 LSPRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAV  280 (367)
T ss_pred             CCHHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHh
Confidence            3457888888875 58999887667899999999999987665    22443333334555555443

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR02317 prpB methylisocitrate lyase

Probab=82.92  E-value=9.3  Score=27.06  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=33.8

Q ss_pred             chHHHHHHHHHhCCCCcE---EEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNI---EVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i---~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ...+.++++.+..+ .|+   ...||-++ -++++|.+.|++.++.+..++.
T Consensus       184 ~~~e~i~~~~~~i~-~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~  234 (285)
T TIGR02317       184 TSLEEFRQFAKAVK-VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFR  234 (285)
T ss_pred             CCHHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHH
Confidence            34566777776653 566   34456555 4899999999999999977764

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=82.92  E-value=11  Score=26.81  Aligned_cols=47  Identities=21%  Similarity=0.212  Sum_probs=32.5

Q ss_pred             chHHHHHHHHHhCCCCcE---EEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNI---EVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i---~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ...+.++++.+..+ .|+   ++.||-++ -++.+|.+.|++.++.+..++.
T Consensus       188 ~~~~ei~~~~~~~~-~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~  238 (294)
T TIGR02319       188 LDVEEMKRVRDEID-APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM  238 (294)
T ss_pred             CCHHHHHHHHHhcC-CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence            34566677666542 344   44555443 6899999999999999977664

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>KOG4175|consensus

Probab=82.69  E-value=2.8  Score=28.96  Aligned_cols=41  Identities=20%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             HHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         21 KWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++|+.-.+.|+.|-=|| ++|+++++... +|++|+||.|..
T Consensus       199 qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~  240 (268)
T KOG4175|consen  199 QRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK  240 (268)
T ss_pred             HHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence            335555446788887676 47889999887 999999999764

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=82.42  E-value=4.1  Score=27.32  Aligned_cols=46  Identities=22%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEec
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .+...+.|+++++.++.--+.-.|. ++.+.++...++||++++++.
T Consensus        45 ~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~   91 (206)
T PRK09140         45 SPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN   91 (206)
T ss_pred             CccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence            3567778888888765323444454 578999999999999999864

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=82.41  E-value=8.5  Score=27.29  Aligned_cols=44  Identities=14%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEecccc
Q psy11601         17 MPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +++++++++.. ++|++.=||  +..+.++...+.|+.-|=+++.+.
T Consensus       188 ~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~  233 (283)
T PRK07998        188 IPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLR  233 (283)
T ss_pred             HHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence            78888888876 689998885  667899999999999999999875

>PLN02885 nicotinate phosphoribosyltransferase

Probab=82.22  E-value=2  Score=33.14  Aligned_cols=36  Identities=22%  Similarity=0.444  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccCC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVINC   63 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~~   63 (82)
                      .++.|++.+|++.+.+.++.+.|  +|.+-+|+.+..+
T Consensus       347 ~~~kIv~Sn~Lde~~i~~L~~~g~~id~fGVGT~LvT~  384 (545)
T PLN02885        347 GKMSITASNDINEETLDALNKQGHEIDAFGIGTHLVTC  384 (545)
T ss_pred             CCeEEEEeCCCCHHHHHHHHHcCCCccEEecCCccccC
Confidence            46789999999999999999888  8999999998543

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=82.16  E-value=4.3  Score=23.98  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcccHH-HHHH--cCCCEEEEecc
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNTID-ECAK--AGANWIVSGTA   59 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~ni~-~~~~--~Gad~vv~gs~   59 (82)
                      ++.+++..|++ ..+.||....-.+ ++.+  .|+|.++.|-+
T Consensus        72 ~~~~k~~~p~~-~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg  113 (121)
T PF02310_consen   72 ARAIKERNPNI-PIVVGGPHATADPEEILREYPGIDYVVRGEG  113 (121)
T ss_dssp             HHHHHTTCTTS-EEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred             HHHHHhcCCCC-EEEEECCchhcChHHHhccCcCcceecCCCh
Confidence            33455555554 5556665544333 4444  79999998843

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=82.14  E-value=11  Score=26.93  Aligned_cols=58  Identities=7%  Similarity=0.059  Sum_probs=40.3

Q ss_pred             HHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         19 KVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      -++.++..+ +.++++|=. |.+......+.|+|.+-..-.=+ .++..++++.++....+
T Consensus       103 ~~~~iK~~~-~~l~MAD~s-tleEal~a~~~Gad~I~TTl~gy-T~~~~~~~~~~~~i~~~  160 (283)
T cd04727         103 EHHIDKHKF-KVPFVCGAR-NLGEALRRISEGAAMIRTKGEAG-TGNVVEAVRHMRAVNGE  160 (283)
T ss_pred             HHHHHHHHc-CCcEEccCC-CHHHHHHHHHCCCCEEEecCCCC-CCcHHHHHHHHHHHHHH
Confidence            355566665 788888877 88888888999999886553222 35777777777665443

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=81.07  E-value=4.1  Score=31.00  Aligned_cols=45  Identities=27%  Similarity=0.520  Sum_probs=32.4

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcC--CCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGG--VGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGG--I~~~ni~~~~~~Gad~vv~g   57 (82)
                      .....++.|+++++..+ -++.+.+|  .+.+.+..++.+|||++.+|
T Consensus       266 ~~~~~~~~i~~ir~~~~-~~~~V~aGnV~t~e~a~~li~aGAd~I~vg  312 (502)
T PRK07107        266 YSEWQKRTLDWIREKYG-DSVKVGAGNVVDREGFRYLAEAGADFVKVG  312 (502)
T ss_pred             ccHHHHHHHHHHHHhCC-CCceEEeccccCHHHHHHHHHcCCCEEEEC
Confidence            34455888999998765 23444443  35678889999999999883

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=81.07  E-value=12  Score=26.48  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         27 YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        27 ~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +|+.|+.+..+- ..-++.+|.+.|++.++.+..++.
T Consensus       209 ~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~  245 (285)
T TIGR02320       209 YPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR  245 (285)
T ss_pred             CCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence            446677665442 233699999999999999977764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=80.86  E-value=1.9  Score=31.01  Aligned_cols=64  Identities=22%  Similarity=0.143  Sum_probs=46.6

Q ss_pred             ccCCCCCCCCCC---cchHHHHHHHHHhC-CC-CcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601          2 TVEPGFGGQKFM---QDMMPKVKWLRENY-PT-LNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus         2 ~v~pG~~gq~~~---~~~~~ki~~~~~~~-~~-~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      .|+||.+||.+.   --.++.++++.+.. .+ .-|.+-.---++-+.++.++|+..+|+.+.=|...|
T Consensus        59 GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d  127 (317)
T PTZ00187         59 GVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHD  127 (317)
T ss_pred             EECCCCCCceEecCCccccCCHHHHhcccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhh
Confidence            389999998764   33677778877651 23 235555566678899999999999999988776555

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=80.72  E-value=7  Score=27.61  Aligned_cols=55  Identities=13%  Similarity=0.084  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      -+.++++++..|..+|+|.=- +.+.+.++.++|+|.+.+-.  |..++.++.++.++
T Consensus       176 ~~av~~~r~~~~~~kIeVEv~-tleea~ea~~~GaDiI~lDn--~~~e~l~~~v~~l~  230 (277)
T TIGR01334       176 GGAIGRLKQTAPERKITVEAD-TIEQALTVLQASPDILQLDK--FTPQQLHHLHERLK  230 (277)
T ss_pred             HHHHHHHHHhCCCCCEEEECC-CHHHHHHHHHcCcCEEEECC--CCHHHHHHHHHHHh
Confidence            344667777655444444443 99999999999999998873  44556666665553

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=80.56  E-value=4.8  Score=29.56  Aligned_cols=41  Identities=15%  Similarity=0.103  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      ...|.++++.. ++|+.+-+-.+.+.+..+.++|||.|+.|.
T Consensus       177 p~~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~  217 (369)
T TIGR01304       177 PLNLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGAAGVIVGP  217 (369)
T ss_pred             HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence            44566666554 588887445577888889999999999663

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=80.47  E-value=10  Score=27.66  Aligned_cols=46  Identities=13%  Similarity=0.250  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-----------------------cccHHHHHHcCCCEEEEecccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-----------------------PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-----------------------~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .+++++++++..+++|++.=||-.                       .++++...+.|+.-|=+++.+.
T Consensus       213 ~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~  281 (347)
T PRK13399        213 AIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIR  281 (347)
T ss_pred             cHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence            477888888876569999999875                       6889999999999998888764

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=80.39  E-value=8.1  Score=21.83  Aligned_cols=42  Identities=24%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~   56 (82)
                      +.++-++++++..+++++.+.+. -+.+...++.++|++.++.
T Consensus        57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~   99 (112)
T PF00072_consen   57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLS   99 (112)
T ss_dssp             BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEE
T ss_pred             cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence            56677788887777788776664 4457788899999887754

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>PRK06464 phosphoenolpyruvate synthase; Validated

Probab=80.33  E-value=6.1  Score=31.74  Aligned_cols=55  Identities=7%  Similarity=-0.022  Sum_probs=40.5

Q ss_pred             CCCCCCCcchHHHHHHHHHh--CCCCcEEEEc---CCCcccHHHHHHcCCCEEEEecccc
Q psy11601          7 FGGQKFMQDMMPKVKWLREN--YPTLNIEVDG---GVGPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~--~~~~~i~~dG---GI~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      ..++.+.|..++-|+++.+.  ..++|+.+.|   +-+++.+..+...|++.+++++...
T Consensus       718 ~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d~~  777 (795)
T PRK06464        718 HLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGIDSISLNPDAV  777 (795)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcchhH
Confidence            34667788888888875442  2357777766   3338999999999999999986543

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=80.31  E-value=9.6  Score=27.89  Aligned_cols=47  Identities=15%  Similarity=0.194  Sum_probs=39.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-----------------------cccHHHHHHcCCCEEEEecccc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-----------------------PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-----------------------~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      -.+++|+++++..+++|++.=||-.                       .+.+.+..+.|+.-|=+++.+.
T Consensus       210 Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~  279 (347)
T TIGR01521       210 LAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLR  279 (347)
T ss_pred             cCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHH
Confidence            3577888888876569999999875                       6899999999999999988875

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PRK12656 fructose-6-phosphate aldolase; Reviewed

Probab=80.19  E-value=12  Score=25.62  Aligned_cols=54  Identities=13%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601         26 NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        26 ~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~   79 (82)
                      ..++..|.+.-=-+.+++.++..+|+|.+-+.-.++.    .+-..+.+++|.+-+++
T Consensus       158 ~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~~  215 (222)
T PRK12656        158 ENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWEA  215 (222)
T ss_pred             cCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            3456888888878888888888999999999877654    46667777777766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
3ovp_A	228	Crystal Structure Of Hrpe Length = 228		3e-25
1h1y_A	228	The Structure Of The Cytosolic D-Ribulose-5-Phospha		2e-22
3qc3_A	225	Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epi		8e-22
1tqx_A	227	Crystal Structure Of Pfal009167 A Putative D-Ribulo		4e-21
1tqj_A	230	Crystal Structure Of D-Ribulose 5-Phosphate 3-Epime		4e-13
2fli_A	220	The Crystal Structure Of D-Ribulose 5-Phosphate 3-E		8e-13
1rpx_A	230	D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tub		5e-12
3inp_A	246	2.05 Angstrom Resolution Crystal Structure Of D-Rib		3e-11
3ct7_A	231	Crystal Structure Of D-Allulose 6-Phosphate 3-Epime		3e-05

>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe Length = 228

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200
Query: 61  INCPDRIQAISTLKS 75
           +   D    I+ L++
Sbjct: 201 MRSEDPRSVINLLRN 215

>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3- Epimerase From Rice Complexed With Sulfate Length = 228

Iteration: 1
 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%)
Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204
Query: 61  INCPDRIQAISTLKSSVQ 78
               +  + IS L+ SV+
Sbjct: 205 FGAAEPGEVISALRKSVE 222

>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase (Np_954699) From Homo Sapiens At 2.20 A Resolution Length = 225

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 57/74 (77%)
Query: 2   TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVI 61
           TVEPGFGGQKF +D  PKV WLR  +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+ 
Sbjct: 143 TVEPGFGGQKFXEDXXPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANXIVSGSAIX 202
Query: 62  NCPDRIQAISTLKS 75
              D    I+ L++
Sbjct: 203 RSEDPRSVINLLRN 216

>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5-Phosphate 3- Epimerase From P.Falciparum Length = 227

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 57/82 (69%)
Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMM KV +LR+ Y  LNI+VDGG+   T +  A  GAN IV+GT++
Sbjct: 145 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSI 204
Query: 61  INCPDRIQAISTLKSSVQKYLS 82
            N  D    I T++ SVQKYL+
Sbjct: 205 FNAEDPKYVIDTMRVSVQKYLN 226

>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length = 230

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+ +++PK++ LR+  +   L+  IEVDGG+ PN   +  +AGAN IV+
Sbjct: 141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200
Query: 57  GTAVINCPDRIQAISTLKSS 76
           G+AV N P+  +AI+ +++S
Sbjct: 201 GSAVFNAPNYAEAIAGVRNS 220

>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length = 220

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 1   MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           MTV PGFGGQ F+ + + KV    KW  E   + +IEVDGGV   TI  C +AGAN  V+
Sbjct: 138 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVA 197
Query: 57  GTAVINCPDRIQAISTLKSSV 77
           G+ +    D +  + TL++++
Sbjct: 198 GSYLFKASDLVSQVQTLRTAL 218

>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length = 230

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE--NYPTLN--IEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F++  + K+  LR+      LN  IEVDGGVGP    +  +AGAN +V+
Sbjct: 147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 206
Query: 57  GTAVINCPDRIQAISTLKSS 76
           G+AV   PD  +AI  +K+S
Sbjct: 207 GSAVFGAPDYAEAIKGIKTS 226

>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of D-Ribulose-Phosphate 3- Epimerase From Francisella Tularensis Length = 246

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1   MTVEPGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQKF+  M+ K K    W+      + +E+DGGV P  I E A  G N  V+
Sbjct: 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVA 222
Query: 57  GTAVINCPDRIQAISTLKSSVQK 79
           G+A+ N     Q I  ++  + K
Sbjct: 223 GSAIFNSDSYKQTIDKMRDELNK 245

>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase From Escherichia Coli K-12 Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 1   MTVEPGFGGQKFMQDMMPKV----KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           MTV+PGF GQ F+ +M+ K+     W         IEVDG     T ++   AGA+  + 
Sbjct: 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIV 194
Query: 57  GTA 59
           GT+
Sbjct: 195 GTS 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	1e-44
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	2e-43
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	7e-43
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	4e-30
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	1e-29
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	1e-29
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	1e-29
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	5e-27
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	4e-25
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	8e-16
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	1e-14
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	1e-14
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	1e-13
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	5e-12
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	2e-05

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Length = 227

 Score =  141 bits (359), Expect = 1e-44
 Identities = 46/82 (56%), Positives = 57/82 (69%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMM KV +LR+ Y  LNI+VDGG+   T +  A  GAN IV+GT++
Sbjct: 145 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSI 204

Query: 61  INCPDRIQAISTLKSSVQKYLS 82
            N  D    I T++ SVQKYL+
Sbjct: 205 FNAEDPKYVIDTMRVSVQKYLN 226

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A Length = 228

 Score =  139 bits (352), Expect = 2e-43
 Identities = 48/81 (59%), Positives = 63/81 (77%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM+DMMPKV WLR  +P+L+IEVDGGVGP+T+ +CA+AGAN IVSG+A+
Sbjct: 141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAI 200

Query: 61  INCPDRIQAISTLKSSVQKYL 81
           +   D    I+ L++   +  
Sbjct: 201 MRSEDPRSVINLLRNVCSEAA 221

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Length = 228

 Score =  137 bits (348), Expect = 7e-43
 Identities = 46/82 (56%), Positives = 62/82 (75%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A AGAN IV+G+++
Sbjct: 145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 204

Query: 61  INCPDRIQAISTLKSSVQKYLS 82
               +  + IS L+ SV+   +
Sbjct: 205 FGAAEPGEVISALRKSVEGSQN 226

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Length = 246

 Score =  105 bits (264), Expect = 4e-30
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
           M+V PGFGGQKF+  M+ K K + +     +   L +E+DGGV P  I E A  G N  V
Sbjct: 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFV 221

Query: 56  SGTAVINCPDRIQAISTLKSSVQK 79
           +G+A+ N     Q I  ++  + K
Sbjct: 222 AGSAIFNSDSYKQTIDKMRDELNK 245

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Length = 220

 Score =  103 bits (260), Expect = 1e-29
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
           MTV PGFGGQ F+ + + KV  + +           IEVDGGV   TI  C +AGAN  V
Sbjct: 138 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFD-IEVDGGVDNKTIRACYEAGANVFV 196

Query: 56  SGTAVINCPDRIQAISTLKSSV 77
           +G+ +    D +  + TL++++
Sbjct: 197 AGSYLFKASDLVSQVQTLRTAL 218

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Length = 230

 Score =  103 bits (260), Expect = 1e-29
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 4/82 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+ +++PK++ LR    E      IEVDGG+ PN   +  +AGAN IV+
Sbjct: 141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 200

Query: 57  GTAVINCPDRIQAISTLKSSVQ 78
           G+AV N P+  +AI+ +++S +
Sbjct: 201 GSAVFNAPNYAEAIAGVRNSKR 222

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Length = 230

 Score =  103 bits (260), Expect = 1e-29
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F++  + K+  LR    E      IEVDGGVGP    +  +AGAN +V+
Sbjct: 147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 206

Query: 57  GTAVINCPDRIQAISTLKSSVQ 78
           G+AV   PD  +AI  +K+S +
Sbjct: 207 GSAVFGAPDYAEAIKGIKTSKR 228

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Length = 231

 Score = 97.3 bits (243), Expect = 5e-27
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRE-----NYPTLNIEVDGGVGPNTIDECAKAGANWIV 55
           MTV+PGF GQ F+ +M+ K+  L+            IEVDG     T ++   AGA+  +
Sbjct: 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVDGSCNQATYEKLMAAGADVFI 193

Query: 56  SGTAVI-NCPDRI-QAISTLKSSVQK 79
            GT+ + N  + I +A   + + +  
Sbjct: 194 VGTSGLFNHAENIDEAWRIMTAQILA 219

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Length = 237

 Score = 92.3 bits (230), Expect = 4e-25
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLR----ENYPTLNIEVDGGVGPNTIDECAKAGAN--WI 54
           +T++P  G +   + ++ +V  +            I +DG +         +      W+
Sbjct: 155 LTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWL 214

Query: 55  VSGTAVINCPDRIQAISTLKSSV 77
           VSG+A+ +  +    +   KSS+
Sbjct: 215 VSGSALFS-GELKTNLKVWKSSI 236

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 67.7 bits (165), Expect = 8e-16
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
            + +    G+ + +  + KVK L E      + V GG+  +T+           ++G  +
Sbjct: 142 QSRDALLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGI 199

Query: 61  INCPDRIQAISTLKSSVQKYL 81
               +   A    K  +++  
Sbjct: 200 TEAKNPAGAARAFKDEIKRIW 220

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 13/80 (16%), Positives = 32/80 (40%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           + V  G   Q   +  +  +  + +      I V GG+   T+ + A  G + ++ G+A+
Sbjct: 131 LAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAI 190

Query: 61  INCPDRIQAISTLKSSVQKY 80
            +  D       +   + ++
Sbjct: 191 THAADPAGEARKISQVLLQH 210

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207

 Score = 64.2 bits (156), Expect = 1e-14
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           + +  G   Q      +  +    E    +   V GGV   TI    KAGA   V+G A+
Sbjct: 131 VEMHAGLDEQAKPGFDLNGLLAAGEKAR-VPFSVAGGVKVATIPAVQKAGAEVAVAGGAI 189

Query: 61  INCPDRIQAISTLKSSV 77
               D   A   L++++
Sbjct: 190 YGAADPAAAAKELRAAI 206

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
            + +    G  + +  +  +K L +      + V GG+    +        +  ++G ++
Sbjct: 137 RSRDAQAAGVAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSI 194

Query: 61  INCPDRIQAISTLKSSVQKY 80
            +    ++A    K S+ + 
Sbjct: 195 RDAASPVEAARQFKRSIAEL 214

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score = 57.7 bits (139), Expect = 5e-12
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
            + +    G  +  D + K++ L      + + + GG+ P  I           ++G A+
Sbjct: 140 RSRDAELAGIGWTTDDLDKMRQLSAL--GIELSITGGIVPEDIYLFEGIKTKTFIAGRAL 197

Query: 61  INCPDRIQA 69
                +  A
Sbjct: 198 AGAEGQQTA 206

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* Length = 286

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 15  DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTL 73
           +++   +  +   P   + V G V     + E   +GA+++    A+   PD   A++ +
Sbjct: 215 EVVRHFR--KGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ-PDWRSALAEI 271

Query: 74  KSSVQKYLS 82
                   +
Sbjct: 272 AGRRPAAPA 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	99.92
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	99.92
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	99.92
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	99.9
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	99.87
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	99.86
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	99.86
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.77
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	99.77
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.72
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.71
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.7
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.65
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.61
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.53
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.52
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.5
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.48
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	99.46
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	99.44
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	99.43
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	99.41
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.38
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	99.32
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	99.32
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	99.25
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	99.25
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.21
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	99.16
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	99.16
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.16
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	99.15
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	99.11
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	99.03
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	99.03
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	99.0
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.95
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	98.92
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	98.9
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	98.88
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	98.88
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.87
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.87
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.86
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	98.85
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.85
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	98.85
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.84
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	98.84
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	98.83
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	98.82
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	98.82
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.8
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	98.76
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	98.65
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.65
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	98.64
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	98.62
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	98.62
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	98.61
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.58
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.58
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	98.57
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	98.57
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	98.55
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.54
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	98.53
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	98.52
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	98.48
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	98.48
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	98.46
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	98.44
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.44
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	98.44
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.42
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	98.37
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.33
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	98.31
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	98.27
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.25
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.24
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	98.23
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.22
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	98.21
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	98.2
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	98.16
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.13
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	98.11
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	98.08
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	98.04
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	98.03
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	97.99
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.95
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	97.95
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	97.94
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	97.88
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	97.88
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	97.88
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	97.88
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	97.8
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	97.77
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.74
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.72
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.7
1viz_A	240	PCRB protein homolog; structural genomics, unknown	97.7
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	97.69
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	97.67
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	97.67
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	97.67
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	97.63
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	97.62
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	97.61
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	97.59
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	97.59
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	97.55
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	97.54
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	97.54
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	97.53
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	97.53
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	97.51
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.49
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	97.46
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	97.43
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	97.41
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.41
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	97.41
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	97.4
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	97.4
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	97.38
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	97.36
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.35
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	97.34
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.31
2fds_A	352	Orotidine-monophosphate-decarboxylase; TIM barrel,	97.3
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	97.29
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	97.25
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	97.22
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	97.2
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	97.17
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.17
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.17
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	97.17
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	97.14
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	97.13
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.11
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	97.1
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	97.09
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	97.09
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.04
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	97.04
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.04
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	97.04
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.0
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	96.98
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.95
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	96.94
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.88
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.86
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	96.81
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	96.81
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	96.77
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	96.73
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	96.73
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	96.71
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	96.69
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	96.68
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.68
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.65
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	96.64
3n3m_A	342	Orotidine 5'-phosphate decarboxylase; P. falciparu	96.62
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	96.62
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	96.58
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	96.57
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.56
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	96.56
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	96.53
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.48
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	96.43
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	96.31
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	96.15
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.12
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	96.1
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.08
1yya_A	250	Triosephosphate isomerase; riken structural genomi	95.94
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	95.75
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	95.75
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	95.72
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	95.67
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	95.65
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	95.63
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	95.55
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	95.53
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	95.5
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	95.5
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	95.46
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.27
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	95.23
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	94.8
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	94.79
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	94.72
2f7f_A	494	Nicotinate phosphoribosyltransferase, putative; st	94.69
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	94.61
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	94.59
3oa3_A	288	Aldolase; structural genomics, seattle structural	94.56
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.32
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	94.28
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	94.17
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	94.09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	94.05
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	94.0
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	93.86
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	93.82
1b9b_A	255	TIM, protein (triosephosphate isomerase); thermoph	93.59
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	93.57
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	93.46
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	93.4
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	93.38
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	93.36
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	93.3
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	93.27
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	93.22
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	92.94
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	92.81
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	92.8
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	92.77
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	92.64
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	92.54
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	92.53
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	92.52
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	92.46
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	92.42
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	91.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	91.45
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	91.31
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	91.14
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	91.12
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	91.09
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	90.95
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	90.93
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	90.74
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	90.7
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	90.7
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	90.6
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	90.52
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	90.47
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	90.42
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	90.3
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	90.12
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	90.02
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	90.0
3f6c_A	134	Positive transcription regulator EVGA; structural	89.87
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	89.86
3s6d_A	310	Putative triosephosphate isomerase; seattle struct	89.84
4dad_A	146	Putative pilus assembly-related protein; response	89.73
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	89.64
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	89.41
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	89.27
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	89.04
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	88.96
3jte_A	143	Response regulator receiver protein; structural ge	88.84
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	88.81
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	88.51
3m6y_A	275	4-hydroxy-2-oxoglutarate aldolase; structural geno	88.38
3ih5_A	217	Electron transfer flavoprotein alpha-subunit; alph	88.36
3eul_A	152	Possible nitrate/nitrite response transcriptional	88.34
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	88.33
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	88.25
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	87.98
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	87.93
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	87.91
3kto_A	136	Response regulator receiver protein; PSI-II,struct	87.86
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	87.85
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	87.7
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	87.69
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	87.66
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	87.66
3ta6_A	267	Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba	87.57
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	87.49
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	87.39
3hdg_A	137	Uncharacterized protein; two-component sensor acti	87.36
3nhm_A	133	Response regulator; protein structure initiative I	87.33
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	86.88
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	86.84
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	86.82
4g1k_A	272	Triosephosphate isomerase; structural genomics, se	86.81
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	86.52
2gkg_A	127	Response regulator homolog; social motility, recei	86.33
3lua_A	140	Response regulator receiver protein; two-component	86.06
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	85.94
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	85.83
3m0z_A	249	Putative aldolase; MCSG, PSI-2, structural genomic	85.54
3rqi_A	184	Response regulator protein; structural genomics, s	85.38
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	85.35
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	85.34
3lte_A	132	Response regulator; structural genomics, PSI, prot	85.33
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	85.12
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	85.1
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	85.0
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	84.68
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	84.41
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	84.4
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	84.39
2qgy_A	391	Enolase from the environmental genome shotgun sequ	84.38
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	84.32
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	84.31
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	84.26
3r0j_A	250	Possible two component system response transcript	84.17
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	84.14
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	84.0
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	83.96
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	83.96
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	83.95
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	83.94
2qr3_A	140	Two-component system response regulator; structura	83.58
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	83.31
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	83.23
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	82.91
2v5b_A	244	Triosephosphate isomerase; TIM, unfolding, monotct	82.89
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	82.82
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	82.42
3kxq_A	275	Triosephosphate isomerase; ssgcid, NIH, niaid, SBR	82.36
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	82.32
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	82.17
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	82.1
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	82.05
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	81.84
2qxy_A	142	Response regulator; regulation of transcription, N	81.75
3eqz_A	135	Response regulator; structural genomics, unknown f	81.66
2gl5_A	410	Putative dehydratase protein; structural genomics,	81.45
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	81.38
1srr_A	124	SPO0F, sporulation response regulatory protein; as	81.34
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	81.17
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	81.16
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	80.91
3cz5_A	153	Two-component response regulator, LUXR family; str	80.88
3crn_A	132	Response regulator receiver domain protein, CHEY-;	80.84
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	80.72
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	80.72
1yio_A	208	Response regulatory protein; transcription regulat	80.37
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	80.31
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	80.1

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=99.92  E-value=2.2e-25  Score=150.06  Aligned_cols=81  Identities=59%  Similarity=1.068  Sum_probs=77.5

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+|+|||+||+|.|+.++||+++++..++++|+|||||+++|++++.++|||++|+||+||+++||++++++|++.+++.
T Consensus       141 msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~~~  220 (228)
T 3ovp_A          141 MTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEA  220 (228)
T ss_dssp             ESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             eeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHH
Confidence            79999999999999999999999998878999999999999999999999999999999999999999999999988776


Q ss_pred             h
Q psy11601         81 L   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       221 ~  221 (228)
T 3ovp_A          221 A  221 (228)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=99.92  E-value=2.2e-25  Score=151.86  Aligned_cols=79  Identities=39%  Similarity=0.659  Sum_probs=72.5

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |+|+|||+||+|.|+.++||++++++    .++++|+|||||+++|++++.++|||++|+||+||+++||++++++|++.
T Consensus       163 MsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~  242 (246)
T 3inp_A          163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDE  242 (246)
T ss_dssp             ECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             eeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHH
Confidence            79999999999999999999999875    34689999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q psy11601         77 VQK   79 (82)
Q Consensus        77 ~~~   79 (82)
                      +++
T Consensus       243 i~~  245 (246)
T 3inp_A          243 LNK  245 (246)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            875

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=99.92  E-value=2.6e-25  Score=149.83  Aligned_cols=81  Identities=57%  Similarity=0.886  Sum_probs=76.2

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+|||||+||+|.|+.++||+++++..++++|+|||||+++|++++.++|||++|+||+||+++||++++++|++.+++.
T Consensus       145 msV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~~~~  224 (227)
T 1tqx_A          145 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKY  224 (227)
T ss_dssp             ESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             eeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998768999999999999999999999999999999999999999999999887764


Q ss_pred             h
Q psy11601         81 L   81 (82)
Q Consensus        81 ~   81 (82)
                      +
T Consensus       225 ~  225 (227)
T 1tqx_A          225 L  225 (227)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=99.90  E-value=5.2e-24  Score=143.70  Aligned_cols=79  Identities=30%  Similarity=0.503  Sum_probs=73.4

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEe-ccccCCCC-HHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSG-TAVINCPD-RIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g-s~i~~~~d-~~~~~~~l~   74 (82)
                      |+|||||+||+|.|+.++||+++++..    ++++|+|||||+++|+.++.++|||++|+| |+||+++| +++++++|+
T Consensus       135 msV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~l~  214 (231)
T 3ctl_A          135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMT  214 (231)
T ss_dssp             ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHHH
T ss_pred             eeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHHHH
Confidence            899999999999999999999998763    368999999999999999999999999999 99999888 999999999


Q ss_pred             HHHHH
Q psy11601         75 SSVQK   79 (82)
Q Consensus        75 ~~~~~   79 (82)
                      +.+++
T Consensus       215 ~~~~~  219 (231)
T 3ctl_A          215 AQILA  219 (231)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            87764

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=99.87  E-value=4.8e-23  Score=139.54  Aligned_cols=76  Identities=20%  Similarity=0.325  Sum_probs=70.8

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHH--cCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAK--AGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~--~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      |||+|||+||.|.|..++||+++++...    +++|+|||||+.+|+.++.+  +|||++|+||+||++ ||++++++|+
T Consensus       155 Msv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~-d~~~~~~~l~  233 (237)
T 3cu2_A          155 LTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWK  233 (237)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS-CHHHHHHHHH
T ss_pred             eeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC-CHHHHHHHHH
Confidence            7999999999999999999999998742    58999999999999999999  999999999999998 9999999998


Q ss_pred             HHH
Q psy11601         75 SSV   77 (82)
Q Consensus        75 ~~~   77 (82)
                      +.+
T Consensus       234 ~~~  236 (237)
T 3cu2_A          234 SSI  236 (237)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            754

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=99.86  E-value=2.1e-21  Score=129.68  Aligned_cols=79  Identities=58%  Similarity=0.968  Sum_probs=75.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      |+++||++||+|.+..+++++++++..+++|++++|||+.+|+.++.++|||++|+||+||+++||++++++|++.+++
T Consensus       145 ~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~~  223 (228)
T 1h1y_A          145 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG  223 (228)
T ss_dssp             ESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             EeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999876799999999999999999999999999999999999999999999988765

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=99.86  E-value=2.2e-22  Score=135.13  Aligned_cols=78  Identities=45%  Similarity=0.750  Sum_probs=68.3

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |+|+|||+||+|.+..+++|+++++..    +++||+|||||+.+|+.++.++|||++|+||+||+++||++++++|++.
T Consensus       141 msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~l~~~  220 (230)
T 1tqj_A          141 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS  220 (230)
T ss_dssp             ESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             EEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHH
Confidence            799999999999999999999998864    3799999999999999999999999999999999999999999999875


Q ss_pred             HH
Q psy11601         77 VQ   78 (82)
Q Consensus        77 ~~   78 (82)
                      ++
T Consensus       221 ~~  222 (230)
T 1tqj_A          221 KR  222 (230)
T ss_dssp             CC
T ss_pred             HH
Confidence            44

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.77  E-value=7.8e-19  Score=115.56  Aligned_cols=78  Identities=40%  Similarity=0.705  Sum_probs=70.9

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhC----CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENY----PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~----~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |+++|||+||.|.+..+++++++++..    +++|+.++|||+++|+.++.++|+|++++||+||+++||++++++|++.
T Consensus       138 ~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~  217 (220)
T 2fli_A          138 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA  217 (220)
T ss_dssp             ESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             EEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence            689999999999999999988888753    2689999999999999999999999999999999999999999999876


Q ss_pred             HH
Q psy11601         77 VQ   78 (82)
Q Consensus        77 ~~   78 (82)
                      ++
T Consensus       218 ~~  219 (220)
T 2fli_A          218 LN  219 (220)
T ss_dssp             HC
T ss_pred             hc
Confidence            53

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=99.77  E-value=2.3e-19  Score=119.28  Aligned_cols=78  Identities=45%  Similarity=0.720  Sum_probs=70.9

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCC----CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYP----TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~----~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |+++|||+||.|.+..+++++++++..+    ++|++++|||+++|+.++.++|||++++||+||+++||.+++++|++.
T Consensus       147 ~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~  226 (230)
T 1rpx_A          147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS  226 (230)
T ss_dssp             ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             EEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence            6889999999999999999998887643    689999999999999999999999999999999999999999999865


Q ss_pred             HH
Q psy11601         77 VQ   78 (82)
Q Consensus        77 ~~   78 (82)
                      ++
T Consensus       227 ~~  228 (230)
T 1rpx_A          227 KR  228 (230)
T ss_dssp             CC
T ss_pred             Hh
Confidence            43

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.72  E-value=8.5e-18  Score=110.10  Aligned_cols=78  Identities=17%  Similarity=0.269  Sum_probs=72.7

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +++||+.||.+.+..+++++++++..+++|++++|||+++|+.++.++|||++++||+||+++||.+++++|++.+++
T Consensus       132 ~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~~  209 (211)
T 3f4w_A          132 AVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ  209 (211)
T ss_dssp             EEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             EEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence            578999999998888999999999876799999999999999999999999999999999999999999999988875

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.71  E-value=1.2e-18  Score=115.60  Aligned_cols=77  Identities=16%  Similarity=0.340  Sum_probs=71.3

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+++|+++||.|.++.+++|++++.  +++|++++|||+++|+.++.++|||++|+||+||+++||.+++ +|++.+++.
T Consensus       140 ~~~~~~~~g~~~~~~~l~~i~~~~~--~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~~~  216 (218)
T 3jr2_A          140 RSRDAELAGIGWTTDDLDKMRQLSA--LGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA-ALREQIDRF  216 (218)
T ss_dssp             CCHHHHHHTCCSCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHHHHHHHHH-HHHHHHHHH
T ss_pred             eccccccCCCcCCHHHHHHHHHHhC--CCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcCCCCHHHHH-HHHHHHHhh
Confidence            5678889999999999999999886  3689999999999999999999999999999999999999999 999988865

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.70  E-value=1.6e-17  Score=109.52  Aligned_cols=79  Identities=19%  Similarity=0.291  Sum_probs=70.4

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcc--cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN--TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~--ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      |+++||++||.|.+...++++++++..+.-++.++|||+.+  |+.++.++|+|.+++||+||+++||.++++++++.++
T Consensus       127 ~a~~~G~~G~~~~~~~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~dp~~~~~~l~~~i~  206 (208)
T 2czd_A          127 VANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (208)
T ss_dssp             HHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             HHHHhCCcEEEECCCChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcCCCHHHHHHHHHHHHh
Confidence            67899999999999999999999987653235599999999  9999999999999999999999999999999998776


Q ss_pred             H
Q psy11601         79 K   79 (82)
Q Consensus        79 ~   79 (82)
                      +
T Consensus       207 ~  207 (208)
T 2czd_A          207 G  207 (208)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.65  E-value=7.1e-17  Score=106.81  Aligned_cols=74  Identities=11%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      |+++|||+|      ..++++++++.. +++|+.++|||+++|+.++.++|||.+|+||+||+++||.++++++++.+++
T Consensus       140 ~~~~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~~  213 (216)
T 1q6o_A          140 DAQAAGVAW------GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE  213 (216)
T ss_dssp             HHHHTTCCC------CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCC------CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHHh
Confidence            578899998      345555555543 2688999999999999999999999999999999999999999999998876


Q ss_pred             h
Q psy11601         80 Y   80 (82)
Q Consensus        80 ~   80 (82)
                      .
T Consensus       214 ~  214 (216)
T 1q6o_A          214 L  214 (216)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.61  E-value=5.5e-16  Score=101.20  Aligned_cols=72  Identities=22%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      |++.|++.|+.+.+   ++|++++..  ++|++++|||+++|+.++.++|||++++||+||+++||.+++++|++.+
T Consensus       135 ~~~~~~~~g~~~~~---~~i~~~~~~--~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~~~  206 (207)
T 3ajx_A          135 AGLDEQAKPGFDLN---GLLAAGEKA--RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAAI  206 (207)
T ss_dssp             CCHHHHTSTTCCTH---HHHHHHHHH--TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHTC
T ss_pred             ecccccccCCCchH---HHHHHhhCC--CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHHHh
Confidence            34566678887665   888888775  5799999999999999999999999999999999999999999988643

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.53  E-value=3.3e-15  Score=100.91  Aligned_cols=75  Identities=19%  Similarity=0.293  Sum_probs=66.2

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      +|+++++.|.+...+ ++++++..++.++.++|||+++           |+.++.++|+|.+|+||+||+++||.+++++
T Consensus       158 ~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~  236 (245)
T 1eix_A          158 TQKCGLDGVVCSAQE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKA  236 (245)
T ss_dssp             HHHTTCSEEECCGGG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHH
T ss_pred             HHHcCCCeEEeCHHH-HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCHHHHHHH
Confidence            677778889988888 8888887555689999999999           9999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy11601         73 LKSSVQK   79 (82)
Q Consensus        73 l~~~~~~   79 (82)
                      +++.+++
T Consensus       237 l~~~i~~  243 (245)
T 1eix_A          237 INASLQR  243 (245)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHHh
Confidence            9887654

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.52  E-value=5.9e-15  Score=98.60  Aligned_cols=76  Identities=17%  Similarity=0.296  Sum_probs=62.7

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      .+++.|+...+..+++|++....  +++|+|||||+++|++++.++|||.+|+||+||+++||.++++++++.++++.
T Consensus       145 ~~~~~Gvv~s~~e~~~ir~~~~~--~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~  220 (221)
T 3exr_A          145 DALLAGETWGEKDLNKVKKLIEM--GFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRIW  220 (221)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHH--TCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCccccCHHHHHHHHHhhcC--CceEEEECCCCHHHHHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHHHHh
Confidence            34445665555556666665543  58899999999999999999999999999999999999999999999988764

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.50  E-value=6.7e-15  Score=98.97  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             CccC-CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccH-----------HHHHHcCCCEEEEeccccCCCCHHH
Q psy11601          1 MTVE-PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTI-----------DECAKAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus         1 m~v~-pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni-----------~~~~~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      |+++ |+++++.|.+.. ++++++++..++.++.++|||++++.           .++.++|+|.+|+||+||+++||.+
T Consensus       147 ma~~~~~~G~~g~v~~~-~~i~~lr~~~~~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~dp~~  225 (239)
T 1dbt_A          147 YSKQAEESGLDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVK  225 (239)
T ss_dssp             HHHHHHHTTCSEEECCG-GGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHH
T ss_pred             HHHHHHHhCCCEEEECH-HHHHHHHHhcCCCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCCHHH
Confidence            3444 677777798877 88888888765568999999999998           8999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy11601         69 AISTLKSSVQKY   80 (82)
Q Consensus        69 ~~~~l~~~~~~~   80 (82)
                      +++++++.++++
T Consensus       226 a~~~l~~~i~~~  237 (239)
T 1dbt_A          226 AYKAVRLEWEGI  237 (239)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.48  E-value=1.2e-14  Score=98.09  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             CccC-CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHH
Q psy11601          1 MTVE-PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus         1 m~v~-pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      |+++ |+++++.|.+...+ ++++++..+..++.++|||+++           |+.++.++|+|.+|+||+||+++||.+
T Consensus       148 ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~  226 (246)
T 2yyu_A          148 YAALAKESGLDGVVCSANE-AAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADPLR  226 (246)
T ss_dssp             HHHHHHHHTCCEEECCHHH-HHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSHHH
T ss_pred             HHHHHHHhCCCEEEeCHHH-HHHHHHhcCCCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCCHHH
Confidence            3454 77778889888887 8888876543459999999999           999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11601         69 AISTLKSSVQK   79 (82)
Q Consensus        69 ~~~~l~~~~~~   79 (82)
                      +++++++.+++
T Consensus       227 a~~~l~~~i~~  237 (246)
T 2yyu_A          227 TYARLQHEWNG  237 (246)
T ss_dssp             HHHHHHHHCC-
T ss_pred             HHHHHHHHHHH
Confidence            99999886643

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=99.46  E-value=3.9e-13  Score=88.42  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=66.3

Q ss_pred             cCCCCCCCC-CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          3 VEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         3 v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +.|.+..+. +.+..++.++++++..+++|+.++|||+++|+.++.++|++++++||+++..+|+.+.+++|++.+++.
T Consensus       145 v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~  223 (227)
T 2tps_A          145 IYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTY  223 (227)
T ss_dssp             SSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHhc
Confidence            456555554 566778889998887634899999999999999999999999999999999899999999999888764

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=99.44  E-value=6.6e-13  Score=86.46  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          3 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         3 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +.|++..+.+.+..++.++++++.. ++|+.++|||+++|+.++.++|++++++||+++..+|+.+.+++|++.+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~  213 (215)
T 1xi3_A          137 VFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEV  213 (215)
T ss_dssp             SSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHhhc
Confidence            3455555556777889999988876 7899999999999999999999999999999999899999999999888754

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=99.43  E-value=4.6e-13  Score=90.73  Aligned_cols=68  Identities=21%  Similarity=0.139  Sum_probs=59.6

Q ss_pred             CCcchHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ..+..++.++++++.. .++|++++|||+++|+.++.++||++|+++|+||+++||.+++++|++.+++
T Consensus       173 ~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~~  241 (243)
T 3o63_A          173 RAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTA  241 (243)
T ss_dssp             --CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHHT
T ss_pred             cchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence            3466788899988763 3799999999999999999999999999999999999999999999998865

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=99.41  E-value=1e-12  Score=86.68  Aligned_cols=74  Identities=12%  Similarity=0.229  Sum_probs=59.9

Q ss_pred             CCCCCCCC---CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKF---MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         5 pG~~gq~~---~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      |.|.++.+   .+..++.++++++.. ++|++++|||+++|+.++.++|++++++||++|.++|+.+.+++|++.+++
T Consensus       138 ~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~  214 (221)
T 1yad_A          138 HVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKE  214 (221)
T ss_dssp             CCC----------CHHHHHHHHHHHC-CSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHH
Confidence            44444433   356788899988775 689999999999999999999999999999999988999999999987764

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.38  E-value=1.8e-13  Score=91.46  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             ccCCCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC--CHHHHHHHHHHH
Q psy11601          2 TVEPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP--DRIQAISTLKSS   76 (82)
Q Consensus         2 ~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~--d~~~~~~~l~~~   76 (82)
                      ++ ||+.|++  +.+..++.++++++.. ++|+.++|||+. +|+.++.++|||++++||++|+..  ++ ++++++.+.
T Consensus       164 ~~-~G~~g~~~~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~  240 (248)
T 1geq_A          164 SL-YGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG-REATEFLKK  240 (248)
T ss_dssp             CC-C-------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG-GGCHHHHHH
T ss_pred             EC-CccCCCCCCCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHH
Confidence            55 8988886  7788899999999886 699999999999 999999999999999999999752  34 566666666


Q ss_pred             HHHh
Q psy11601         77 VQKY   80 (82)
Q Consensus        77 ~~~~   80 (82)
                      +++.
T Consensus       241 ~~~~  244 (248)
T 1geq_A          241 KVEE  244 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=99.32  E-value=3e-12  Score=86.48  Aligned_cols=74  Identities=15%  Similarity=0.281  Sum_probs=60.3

Q ss_pred             CCCCCC--CCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC----CCHHH---HHHHHH
Q psy11601          5 PGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC----PDRIQ---AISTLK   74 (82)
Q Consensus         5 pG~~gq--~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~----~d~~~---~~~~l~   74 (82)
                      +|+.|+  .+.+..++.++++++.. ++||+++|||+ ++|+.++.++|||++++||+|++.    .++.+   .++++.
T Consensus       176 ~G~tG~~~~~~~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~  254 (262)
T 1rd5_A          176 NGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYA  254 (262)
T ss_dssp             SCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCchHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHH
Confidence            888888  77788889999999876 69999999999 999999999999999999999973    24444   445555


Q ss_pred             HHHHH
Q psy11601         75 SSVQK   79 (82)
Q Consensus        75 ~~~~~   79 (82)
                      +.+++
T Consensus       255 ~~l~~  259 (262)
T 1rd5_A          255 RGMKN  259 (262)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=99.32  E-value=4.1e-12  Score=83.16  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHhCC-CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC----CCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYP-TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC----PDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~-~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~----~d~~~~~~~l~~~~~~~   80 (82)
                      ..+++++++++..+ ++|++++|||+.+|+.++.++||+++++||++|.+    +||.+.+++|++.+++.
T Consensus       133 ~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~~~~~  203 (212)
T 2v82_A          133 FGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREA  203 (212)
T ss_dssp             HCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35788888888765 59999999999999999999999999999999987    68999999998887653

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=99.25  E-value=1.6e-11  Score=83.56  Aligned_cols=60  Identities=20%  Similarity=0.300  Sum_probs=52.2

Q ss_pred             ccCCCCCCC--CCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601          2 TVEPGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus         2 ~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ++. |+.||  ++.+...++++++++.. ++|+.++|||+ ++++.++..+|||++|+||+|++.
T Consensus       178 s~~-G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~  240 (268)
T 1qop_A          178 SRS-GVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI  240 (268)
T ss_dssp             SSS-SCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             ecC-CcCCCccCCCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence            455 99998  78888899999999976 68999999998 999999889999999999999863

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=99.25  E-value=1.8e-11  Score=79.64  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC---HHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD---RIQAISTLKSSVQK   79 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d---~~~~~~~l~~~~~~   79 (82)
                      .++.++++++..+++|++++|||+.+|+.++.++|||++++||++|. +|   +.+.++++.+.+++
T Consensus       137 g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~~~~~  202 (205)
T 1wa3_A          137 GPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEKIRG  202 (205)
T ss_dssp             HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC-CCHHHHHHHHHHHHHHHHh
Confidence            45666777766667999999999999999999999999999999999 89   88888888887764

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.21  E-value=2.8e-11  Score=79.48  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             ccCCCCCCCCCC----cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          2 TVEPGFGGQKFM----QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         2 ~v~pG~~gq~~~----~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++|+.++.+.    ...++.++++++.. ++|+.++||| +.+++.++.++|||++++|++||.   +....++|++.
T Consensus       145 ~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~---p~~~~~~~~~~  220 (223)
T 1y0e_A          145 TTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRFVQV  220 (223)
T ss_dssp             CTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHT
T ss_pred             eCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC---cHHHHHHHHHH
Confidence            346788877663    34566788887765 6999999999 999999999999999999999996   66777777665


Q ss_pred             H
Q psy11601         77 V   77 (82)
Q Consensus        77 ~   77 (82)
                      +
T Consensus       221 ~  221 (223)
T 1y0e_A          221 M  221 (223)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=99.16  E-value=9.2e-11  Score=86.89  Aligned_cols=66  Identities=14%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             cchHHHHHHHHHh-----CCCCcEEEEcCCCcccHHHHHH--------cCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLREN-----YPTLNIEVDGGVGPNTIDECAK--------AGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        14 ~~~~~ki~~~~~~-----~~~~~i~~dGGI~~~ni~~~~~--------~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +-.++.++++++.     ..++|++++|||+++|+.++.+        +|+|+++++|+||+++||.+++++|++.+++
T Consensus       153 ~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~  231 (540)
T 3nl6_A          153 PMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDK  231 (540)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence            3445666665543     1469999999999999999998        8999999999999999999999999998875

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=99.16  E-value=6.8e-11  Score=78.13  Aligned_cols=61  Identities=13%  Similarity=0.196  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCC---HHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPD---RIQAISTLKSSV   77 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d---~~~~~~~l~~~~   77 (82)
                      .++.|++++...+++|++++|||+.+|+.+++++|++++++||+|+. +|   +.+.++++.+.+
T Consensus       138 G~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~~  201 (207)
T 2yw3_A          138 GVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKALL  201 (207)
T ss_dssp             HHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHHh
Confidence            45778888888778999999999999999999999999999999998 77   556666665543

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.16  E-value=9.2e-11  Score=77.70  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .++|++  +.+.+..++.++++++.  ++|+.++|||+ ++++.++.++|||++++||++|.   |...+++|++.++
T Consensus       163 g~~~~~--~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~---p~~~~~~l~~~~~  233 (234)
T 1yxy_A          163 GYTPYS--RQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAERFIEALK  233 (234)
T ss_dssp             TSSTTS--CCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHHHHHHHTC
T ss_pred             ccCCCC--cCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC---hHHHHHHHHHHHh
Confidence            344544  44556678888888876  69999999999 99999999999999999999997   7788888876653

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=99.15  E-value=6.1e-11  Score=81.32  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         14 QDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +..+++++++++.. ++|+.  ++||| +.+++..+.++|||++++||++|+++||.+.+++|++.+++.
T Consensus       193 ~~~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~  261 (297)
T 2zbt_A          193 GAPFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHY  261 (297)
T ss_dssp             TCCHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence            44678888888864 56766  99999 999999999999999999999999999999999999887654

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=99.11  E-value=2.9e-11  Score=81.05  Aligned_cols=79  Identities=19%  Similarity=0.151  Sum_probs=56.1

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCC-CcEEEEcCCCcc--cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPT-LNIEVDGGVGPN--TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~-~~i~~dGGI~~~--ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      |++++|+.|.-......+.++++|+..++ +++ +++||+++  +. +..++|+|.+|+|++||+++||.++++++++.+
T Consensus       145 ~a~~~G~~GvV~~at~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~~~  222 (228)
T 3m47_A          145 MGVDLGVKNYVGPSTRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLADNPAAAAAGAIESI  222 (228)
T ss_dssp             HHHHTTCCEEECCSSCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTSSCHHHHHHHHHHHC
T ss_pred             HHHHhCCcEEEECCCChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHHHH
Confidence            45678888866665556677777776544 666 89999987  77 888999999999999999999999999999988


Q ss_pred             HHhh
Q psy11601         78 QKYL   81 (82)
Q Consensus        78 ~~~~   81 (82)
                      ++.+
T Consensus       223 ~~~~  226 (228)
T 3m47_A          223 KDLL  226 (228)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            7654

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.03  E-value=1.5e-10  Score=76.11  Aligned_cols=53  Identities=13%  Similarity=0.027  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601         15 DMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        15 ~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~   67 (82)
                      -.++.++++++.. .++|+++.|||+++|+.++.++|++++.++|+|++++|+.
T Consensus       129 ~g~~~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~~~d~~  182 (210)
T 3ceu_A          129 YTAEELREAQKAKIIDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWNKFDAC  182 (210)
T ss_dssp             CCHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHTTCCTT
T ss_pred             CCHHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHcCCCHH
Confidence            3556677777753 4789999999999999999999999999999999988875

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=99.03  E-value=1.1e-09  Score=74.47  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      .+.++++++.. ++|+++.|||+ ++++.++.++|||++++||+|++.+|+.+.+++|.+.+++
T Consensus       167 ~~~l~~i~~~~-~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~~~v~~  229 (264)
T 1xm3_A          167 PLNLSFIIEQA-KVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEA  229 (264)
T ss_dssp             HHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHHHHHH
Confidence            55677777754 79999999996 8999999999999999999999999999999999887764

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=99.00  E-value=1.2e-09  Score=72.87  Aligned_cols=64  Identities=17%  Similarity=0.380  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcc--cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPN--TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~--ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      -+.++++|+..++ .+.+++||+++  +..+..++|+|.+|+|++||+++||.++++++++.+++.+
T Consensus       139 ~~e~~~ir~~~~~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~  204 (215)
T 3ve9_A          139 PSMISRVKGDFPD-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVL  204 (215)
T ss_dssp             HHHHHHHHHHCTT-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCC-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3456667776666 68899999999  9999999999999999999999999999999999888754

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.95  E-value=2.3e-09  Score=73.01  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcc-------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPN-------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~-------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .++.++++++..+.+|+.+.|||+.+       ++..+.++||+++++|++||+++||.+.+++|++.+++.
T Consensus       183 ~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~~~~l~~~v~~~  254 (263)
T 1w8s_A          183 DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGG  254 (263)
T ss_dssp             SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHHHHHHHHHHhcC
Confidence            56778887776644599999999987       888888999999999999999999999999999988654

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=98.92  E-value=3.9e-09  Score=70.63  Aligned_cols=48  Identities=13%  Similarity=0.224  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCP   64 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~   64 (82)
                      ..+.|++++...|++|++++|||+++|+.+|++ .|+++++ ||+|++++
T Consensus       153 G~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~-gSai~~~~  201 (225)
T 1mxs_A          153 GVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG-TTWMLDSS  201 (225)
T ss_dssp             HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE-ECTTSCHH
T ss_pred             CHHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE-EchhcCch
Confidence            367788888888889999999999999999999 7999999 99999843

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=98.90  E-value=2.5e-09  Score=74.30  Aligned_cols=65  Identities=15%  Similarity=0.330  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ..++.++++++.. ++|+.  ++||| +++++..+.++|||++++||+||+++||.+.+++|++.++++
T Consensus       194 ~~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~  261 (297)
T 4adt_A          194 APIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNF  261 (297)
T ss_dssp             CCHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhh
Confidence            3466677777764 35554  99999 999999999999999999999999999999999999888754

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=98.88  E-value=1.7e-09  Score=71.81  Aligned_cols=49  Identities=10%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPD   65 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d   65 (82)
                      ..+.|+++++..|++|++++|||+++|+.++.++ |+++++ ||+|+.+++
T Consensus       143 G~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~-gS~i~~~~~  192 (214)
T 1wbh_A          143 GVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG-GSWLVPADA  192 (214)
T ss_dssp             HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE-EGGGSCHHH
T ss_pred             CHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE-eccccChhh
Confidence            3678899998888899999999999999999999 999999 999997543

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=98.88  E-value=7.7e-09  Score=69.16  Aligned_cols=59  Identities=17%  Similarity=0.162  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCC-----CCHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINC-----PDRIQAISTLKS   75 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~-----~d~~~~~~~l~~   75 (82)
                      .++.|+++++..|++|++++|||+++|+.+++++ |+++++ ||+|+.+     .|+.+..+..++
T Consensus       144 G~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~-gS~i~~~~~i~~~~~~~i~~~a~~  208 (224)
T 1vhc_A          144 GVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG-GSWFVEKKLIQSNNWDEIGRLVRE  208 (224)
T ss_dssp             HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE-EchhcCcchhccCCHHHHHHHHHH
Confidence            3788899998887899999999999999999999 999999 9999974     455444333333

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.87  E-value=7.4e-09  Score=68.89  Aligned_cols=69  Identities=20%  Similarity=0.202  Sum_probs=54.4

Q ss_pred             cCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHHHH
Q psy11601          3 VEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP-DRIQAISTLKS   75 (82)
Q Consensus         3 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~~   75 (82)
                      ++++...+.+   .++.++++++.. ++|+.+.|||+. +++.++.++|+|++++||+++..+ ++.+..+.+++
T Consensus       173 ~~~~g~~~g~---~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l~~  243 (253)
T 1thf_D          173 IDRDGTKSGY---DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK  243 (253)
T ss_dssp             TTTTTSCSCC---CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred             ccCCCCCCCC---CHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4555555554   356666666654 699999999995 999999999999999999999876 88887777653

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.87  E-value=1e-08  Score=67.37  Aligned_cols=69  Identities=17%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP-DRIQAISTLK   74 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~   74 (82)
                      +++|++.++.+   .++.++++++.. ++|+.+.|||+. +++.++.++|||++++||+++..+ ++.+..+.++
T Consensus       175 ~~~~~g~~~~~---~~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~  245 (253)
T 1h5y_A          175 SIDRDGTGLGY---DVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLK  245 (253)
T ss_dssp             ETTTTTTCSCC---CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred             cccCCCCcCcC---CHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHH
Confidence            35566556655   456667777665 689999999994 999999999999999999999865 5554444443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.86  E-value=8.5e-09  Score=70.65  Aligned_cols=61  Identities=21%  Similarity=0.217  Sum_probs=46.6

Q ss_pred             CccCCCCCCCC-CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          1 MTVEPGFGGQK-FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         1 m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |++.+.++.+. +.++..+.++++++.. +.|+.+.|||+ ++++.....+|||++|+||+|++
T Consensus       178 vS~~GvTG~~~~~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~  240 (267)
T 3vnd_A          178 LSRAGVTGTESKAGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVK  240 (267)
T ss_dssp             SCCCCCC--------CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             EecCCCCCCccCCcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            35555555554 6777888899999875 68999999995 99999888999999999999986

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=98.85  E-value=5.2e-09  Score=72.38  Aligned_cols=65  Identities=14%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHhCCCCcEEE--EcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYPTLNIEV--DGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~--dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ..++.|+++++. .++|+.+  -||| +++++..+.++|+|++++||++|+++||....++|.+.++.+
T Consensus       185 ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~  252 (291)
T 3o07_A          185 VPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF  252 (291)
T ss_dssp             SCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence            357778888877 3688865  5999 899999999999999999999999999999999999988754

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=98.85  E-value=5.6e-09  Score=71.60  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=56.4

Q ss_pred             CCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         10 QKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      ..|.+ .++.++++.+..+ ++|+++.|||+ ++++..+.++|+|+|++|++|++++||.+.+++|.+.
T Consensus       194 ~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~~  261 (272)
T 3qja_A          194 MTLDV-DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTA  261 (272)
T ss_dssp             TTCCB-CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHTT
T ss_pred             ccccc-CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHhh
Confidence            34443 4677778777655 68999999998 9999999999999999999999999999999998764

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=98.85  E-value=2.3e-09  Score=71.26  Aligned_cols=67  Identities=13%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             CCCCcchHHHHHH-HHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         10 QKFMQDMMPKVKW-LRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        10 q~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.+.++.++...+ +++...++|+.+.|||+. +.+..+.+.|+|++++||++++++|+.+.+++|++.
T Consensus       150 ~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~~~  218 (219)
T 2h6r_A          150 SKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKF  218 (219)
T ss_dssp             ------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC-
T ss_pred             ccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHHHHh
Confidence            6777775666555 455544689999999995 666778999999999999999999999998887653

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.84  E-value=1.1e-08  Score=69.01  Aligned_cols=65  Identities=18%  Similarity=0.250  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCccc-------HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNT-------IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~n-------i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ..++.++++++.. ++|+.+.|||+.+|       +.++.++|++++.+|++|++++||.+.++++++.+++.
T Consensus       189 ~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~~~~~~  260 (273)
T 2qjg_A          189 GDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHEN  260 (273)
T ss_dssp             SSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHHHHhcC
Confidence            4577888888765 68999999999887       88888999999999999999999999999999887653

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=98.84  E-value=4.4e-09  Score=74.04  Aligned_cols=64  Identities=13%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHhCCCCcE--EEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         16 MMPKVKWLRENYPTLNI--EVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i--~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .++-++++++.. ++|+  .+.||| +++|+..+.++|+|+|.+||+||+++||.+.+++|.+.++.+
T Consensus       228 ~lell~~i~~~~-~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~  294 (330)
T 2yzr_A          228 LYEVLLEVKKLG-RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNY  294 (330)
T ss_dssp             HHHHHHHHHHHT-SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            346677777754 4676  699999 699999999999999999999999999999999999887653

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=98.83  E-value=1.1e-08  Score=71.42  Aligned_cols=60  Identities=12%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ++++|+..++-.+.+.+||+++           |+.++.++|||.+|+||+||+++||.++++++++.+++
T Consensus       182 ~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i~~  252 (303)
T 3ru6_A          182 SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHR  252 (303)
T ss_dssp             HHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHh
Confidence            3455555544458899999987           89999999999999999999999999999999987754

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=98.82  E-value=6.4e-09  Score=71.72  Aligned_cols=66  Identities=12%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             cchHHHHHHHHHhCCCCcEE--EEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         14 QDMMPKVKWLRENYPTLNIE--VDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~--~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +..++.++++++.. ++|+.  +.||| +.+++.++.++|||++++||++|..+||...+++|.+.+.++
T Consensus       193 ~~~~~~i~~i~~~~-~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~~  261 (305)
T 2nv1_A          193 GAPYELLLQIKKDG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHF  261 (305)
T ss_dssp             TCCHHHHHHHHHHT-SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHh
Confidence            34566777777754 57877  99999 999999999999999999999999999999999999887654

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=98.82  E-value=7.8e-09  Score=70.68  Aligned_cols=66  Identities=18%  Similarity=0.094  Sum_probs=52.6

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      .|..++.||+..   ++--+.+..||++.           |..++.++|+|.+|+||+||+++||.++++++++.+++++
T Consensus       164 s~~e~~~ir~~~---~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~~~~~~  240 (259)
T 3tfx_A          164 SPLEVKKLHENI---GDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFNAEN  240 (259)
T ss_dssp             CGGGHHHHHHHH---CSSSEEEECCCCCC-----------CHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHhhc---CCccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence            444444454432   22336789999987           5889999999999999999999999999999999887664

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.80  E-value=8.1e-09  Score=68.56  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHc---CCCEEEEeccccCCC-CHHHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKA---GANWIVSGTAVINCP-DRIQAIST   72 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~---Gad~vv~gs~i~~~~-d~~~~~~~   72 (82)
                      +++|++.+|.+.   ++.++++++.. ++|+.++|||+. +++.++.++   |||++++||+++..+ ++.+..+.
T Consensus       167 ~~~~~~~~~g~~---~~~~~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~  238 (244)
T 1vzw_A          167 DIAKDGTLQGPN---LELLKNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEA  238 (244)
T ss_dssp             EC-------CCC---HHHHHHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             ccCcccccCCCC---HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHH
Confidence            456776666654   55555555654 689999999996 999999999   999999999999866 55554443

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=98.76  E-value=2.6e-08  Score=66.54  Aligned_cols=63  Identities=17%  Similarity=0.392  Sum_probs=54.7

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCcc--cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPN--TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~--ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      +.++++|+..++ .+.+.+||+++  +..+..++|+|.+|+|++|++++||.++++++++.+++.+
T Consensus       147 ~e~~~ir~~~~~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~~~  211 (222)
T 4dbe_A          147 DHITQYRRDFEK-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIEDKV  211 (222)
T ss_dssp             HHHHHHHHHCTT-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            456667776666 57899999998  7889999999999999999999999999999999887754

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=98.65  E-value=2.5e-08  Score=66.11  Aligned_cols=57  Identities=25%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCccc----------HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPNT----------IDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~n----------i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      ++++++++..+. + .+++||++++          ..+ .++|+|.+|+|+.||+++||.++++++++.+
T Consensus       146 ~~~~~ir~~~~~-~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~~i  212 (213)
T 1vqt_A          146 PWAKALREKIKG-K-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKEMR  212 (213)
T ss_dssp             HHHHHHTTTCCS-C-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC--
T ss_pred             HHHHHHHHHCCC-C-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHHHh
Confidence            567777776544 5 9999999987          578 9999999999999999999999999988754

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.65  E-value=3.8e-08  Score=65.10  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=49.6

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHc---CCCEEEEeccccCCC-CHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKA---GANWIVSGTAVINCP-DRIQAI   70 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~---Gad~vv~gs~i~~~~-d~~~~~   70 (82)
                      ++++++.++.+   .++.++++++.. ++|+.++|||+. +++.++.++   |||++++||+++..+ ++.+..
T Consensus       170 ~~~~~~~~~g~---~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~  239 (244)
T 2y88_A          170 DITKDGTLGGP---NLDLLAGVADRT-DAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQAL  239 (244)
T ss_dssp             ETTTTTTTSCC---CHHHHHHHHTTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred             ecCCccccCCC---CHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHH
Confidence            45666665555   455666666654 799999999996 999999998   999999999999865 444433

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=98.64  E-value=1.7e-07  Score=62.72  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      ...++.++++++.  ++|+.+.||| +++++..+.++|||++++|++|++   |....++|.+.+++.-
T Consensus       168 ~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~---p~~~~~~~~~~i~~~~  231 (232)
T 3igs_A          168 EPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR---LEHICGWYNDALKKAA  231 (232)
T ss_dssp             SCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC---HHHHHHHHHHHHHHhc
Confidence            3467888888876  6999999999 599999999999999999999995   6777888888877653

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=98.62  E-value=4.3e-08  Score=67.20  Aligned_cols=53  Identities=19%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             CCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         12 FMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |.++.++++.+ ++...|++++++.|||+++|+.++.++|+|.+++||.++.++
T Consensus       211 ~~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~vGs~i~~a~  264 (273)
T 2b7n_A          211 LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQAT  264 (273)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred             CCHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence            45666666554 344457899999999999999999999999999999988643

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=98.62  E-value=7.5e-08  Score=66.87  Aligned_cols=52  Identities=23%  Similarity=0.373  Sum_probs=47.1

Q ss_pred             CCc-EEEEcCCCc----ccHHHHHHcCCCEEEEeccccCC----CCHHHHH--------HHHHHHHHHh
Q psy11601         29 TLN-IEVDGGVGP----NTIDECAKAGANWIVSGTAVINC----PDRIQAI--------STLKSSVQKY   80 (82)
Q Consensus        29 ~~~-i~~dGGI~~----~ni~~~~~~Gad~vv~gs~i~~~----~d~~~~~--------~~l~~~~~~~   80 (82)
                      +.| |++.||++.    +++..+.++|+++|++|++||++    +||.+.+        ++|++.+.+.
T Consensus       221 ~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~~~~~~dp~~~~~~~~~~~~~~l~~iv~~~  289 (304)
T 1to3_A          221 NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGEIVDEM  289 (304)
T ss_dssp             CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCccccCCCHHHHHHhhchHHHHHHHHHHhcC
Confidence            579 999999998    45999999999999999999999    9999999        9999888654

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=98.61  E-value=1.5e-07  Score=63.38  Aligned_cols=47  Identities=23%  Similarity=0.342  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..+.|+.++...|++|+++.|||+++|+.+++++|+..++.||.++.
T Consensus       161 G~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs~l~~  207 (232)
T 4e38_A          161 GISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVD  207 (232)
T ss_dssp             HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGC
T ss_pred             CHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECchhcC
Confidence            46888999988788999999999999999999999999999999985

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.58  E-value=9e-08  Score=64.93  Aligned_cols=74  Identities=22%  Similarity=0.280  Sum_probs=52.9

Q ss_pred             CCCCCCC--CC-cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC--CCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQK--FM-QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC--PDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~--~~-~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~--~d~~~~~~~l~~~~~   78 (82)
                      +|..|..  +. +...+.++++++.. ++|+.+.|||+ ++++.. +..|||++++||+|.+.  ++..+.++++.+.++
T Consensus       180 ~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~~  257 (262)
T 2ekc_A          180 TGTTGAREKLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKELK  257 (262)
T ss_dssp             CC---------CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCccCCCCCcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHHH
Confidence            3444544  23 44567888899886 78999999998 999999 57799999999999874  445566777776665


Q ss_pred             Hh
Q psy11601         79 KY   80 (82)
Q Consensus        79 ~~   80 (82)
                      +.
T Consensus       258 ~~  259 (262)
T 2ekc_A          258 EG  259 (262)
T ss_dssp             HT
T ss_pred             HH
Confidence            53

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.58  E-value=2.9e-07  Score=61.07  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP-DRIQAISTLK   74 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~   74 (82)
                      .++.++++++.. ++|+.+.|||+ ++++.++.++|+|++++||+++..+ ++.+..+.+.
T Consensus       184 ~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~  243 (252)
T 1ka9_F          184 DLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLA  243 (252)
T ss_dssp             CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            488888888875 69999999999 5999999999999999999999876 7777766554

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=98.57  E-value=1.1e-07  Score=65.63  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             CCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         12 FMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |.|+.+.++.+ ++...+++++++.|||+++|+++|.++|+|.|++|+.+..++
T Consensus       223 ~~~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~isvG~l~~~a~  276 (284)
T 1qpo_A          223 FAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHSVR  276 (284)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred             CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECHHHcCCC
Confidence            56666666444 555556799999999999999999999999999999887644

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=98.57  E-value=4.1e-08  Score=67.92  Aligned_cols=53  Identities=13%  Similarity=0.255  Sum_probs=43.6

Q ss_pred             CCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         12 FMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |.++.++++.+ ++...+++++++.|||+++|+++|.++|+|++++|+.++.++
T Consensus       222 ~~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~IsvGslt~sa~  275 (285)
T 1o4u_A          222 LSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV  275 (285)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred             CCHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence            56666666554 444456799999999999999999999999999999988754

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.55  E-value=3.7e-08  Score=66.86  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhCC----CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         17 MPKVKWLRENYP----TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        17 ~~ki~~~~~~~~----~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      ++..+++.+..|    ++++++.|||+ ++++..+.+ |+|+|++|++|+.++||.+++++|.
T Consensus       192 l~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~~~~~~l~  253 (254)
T 1vc4_A          192 LETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV  253 (254)
T ss_dssp             TTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCHHHHHHHHh
Confidence            455555554432    58999999998 999999999 9999999999999999999998874

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=98.54  E-value=2.1e-07  Score=63.91  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        16 ~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      .++...++.+..| ++++++.||| +++++..+.++|+|+|++|++|+.++||.+++++|..
T Consensus       206 dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~  267 (272)
T 3tsm_A          206 NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLT  267 (272)
T ss_dssp             CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred             ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence            3677777776654 5899999999 9999999999999999999999999999999998875

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=98.53  E-value=2.2e-07  Score=62.70  Aligned_cols=57  Identities=19%  Similarity=0.423  Sum_probs=43.6

Q ss_pred             HHHhCCCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         23 LRENYPTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        23 ~~~~~~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +|+..++-.+.+..||+++           |..++.++|+|.+|+||+||+++||.++++++++.+++
T Consensus       171 ir~~~~~~fl~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~~~i~~~i~~  238 (239)
T 3tr2_A          171 LRKQFDRNFLLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKDIKT  238 (239)
T ss_dssp             HHTTCCTTSEEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHC--
T ss_pred             HHHhcCCCcEEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHhh
Confidence            4444333236788999876           47789999999999999999999999999999987654

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=98.52  E-value=8.4e-08  Score=66.60  Aligned_cols=53  Identities=17%  Similarity=0.389  Sum_probs=42.8

Q ss_pred             CCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         12 FMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        12 ~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |.++.++++.+ ++...|+++|++.|||+++|+.++.++|+|.+++||.+++++
T Consensus       226 ~~~~~l~~~v~~l~~~~~~~~I~ASGGIt~~ni~~~~~aGaD~i~vGs~i~~a~  279 (299)
T 2jbm_A          226 FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISMGMLTQAAP  279 (299)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSEEEEESSCCTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred             CCHHHHHHHHHHhhccCCCeeEEEECCCCHHHHHHHHHCCCCEEEEChhhcCCC
Confidence            44556665554 333467799999999999999999999999999999888754

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=98.48  E-value=5.4e-07  Score=60.25  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      ..++.++++++.  ++|+.+.||| +++++..+.++|||++++|++|++   |....++|.+.++
T Consensus       169 ~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~---p~~~~~~f~~~~~  228 (229)
T 3q58_A          169 PDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR---IEHICQWFSHAVK  228 (229)
T ss_dssp             CCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC---hHHHHHHHHHHHh
Confidence            367888888775  6999999999 699999999999999999999995   5556666666553

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=98.46  E-value=9.1e-07  Score=60.62  Aligned_cols=61  Identities=18%  Similarity=0.314  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .+-|+++++. .++|+.++|||.- +.+....+.|+|++++||+|++++||....++|.+.++
T Consensus       176 ~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~  237 (265)
T 1wv2_A          176 PYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV  237 (265)
T ss_dssp             HHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence            5556777775 4799999999964 99999999999999999999999999999999998765

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=98.44  E-value=3.9e-07  Score=62.11  Aligned_cols=68  Identities=16%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      |..|--..+..+++|   |+.. +++ +.+..||+++           |..++.++|+|.+|+|++||+++||.++++++
T Consensus       175 G~~GvV~sa~e~~~i---R~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i  250 (255)
T 3ldv_A          175 GLDGVVCSAQEASLL---KQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEI  250 (255)
T ss_dssp             TCSEEECCHHHHHHH---HHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHHHHH
T ss_pred             CCCEEEECHHHHHHH---HHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHHHHH
Confidence            444444444444444   4433 334 6688999876           47789999999999999999999999999999


Q ss_pred             HHHH
Q psy11601         74 KSSV   77 (82)
Q Consensus        74 ~~~~   77 (82)
                      ++.+
T Consensus       251 ~~ei  254 (255)
T 3ldv_A          251 NSSL  254 (255)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8754

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.44  E-value=6.3e-07  Score=61.47  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=43.9

Q ss_pred             CCCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601          4 EPGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         4 ~pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..|+.|..  +.+...+.++++++.. +.|+.+-+|| +++++.+....|||++|+||+|.+
T Consensus       182 ~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~  242 (271)
T 3nav_A          182 RAGVTGAETKANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAGAAGAISGSAVVK  242 (271)
T ss_dssp             CC--------CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             ccCCCCcccCCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            45766754  4555567788888876 6899999999 599999888999999999999986

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=98.44  E-value=6.7e-07  Score=62.05  Aligned_cols=60  Identities=12%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcc------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPN------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      ++++.+.. ++|+.+.||++.+      ++.+..++||+++++|+.||+++||.+.++.+++.+.+.
T Consensus       215 ~~~vv~~~-~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ivh~~  280 (295)
T 3glc_A          215 FERIVAGC-PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHN  280 (295)
T ss_dssp             HHHHHHTC-SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhC-CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHHHHhCC
Confidence            45555544 5899999999864      588888999999999999999999999999999887653

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.42  E-value=1.5e-06  Score=59.72  Aligned_cols=62  Identities=16%  Similarity=0.264  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhCCC-CcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPT-LNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        17 ~~ki~~~~~~~~~-~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .+.|+++++..++ +|+.++|||.. +.+....+.|||++.++|+|++++||....++|.+.++
T Consensus       165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~  228 (268)
T 2htm_A          165 RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE  228 (268)
T ss_dssp             HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence            3346677773356 89999999975 99999999999999999999999999999999988765

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=98.37  E-value=3.4e-07  Score=63.31  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |.|+.+++..+..  .+++|+++.|||+++|+.++.++|+|++++|+.++.++
T Consensus       225 ~~~~~~k~av~~v--~~~ipi~AsGGIt~eni~~~a~tGvD~IsVgs~~~~a~  275 (286)
T 1x1o_A          225 FPLEALREAVRRV--GGRVPLEASGNMTLERAKAAAEAGVDYVSVGALTHSAK  275 (286)
T ss_dssp             CCHHHHHHHHHHH--TTSSCEEEESSCCHHHHHHHHHHTCSEEECTHHHHSCC
T ss_pred             CCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHcCCCEEEEcHHHcCCC
Confidence            4444444433322  23689999999999999999999999999999887643

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.33  E-value=5.7e-07  Score=61.31  Aligned_cols=62  Identities=23%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             CCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601          8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      .|....+..++.++++++.. ++||.+.||| +.+++.+++++|||.+.+|++++..++..+.+
T Consensus       221 ~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i  283 (311)
T 1ep3_A          221 SGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKI  283 (311)
T ss_dssp             ESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHH
T ss_pred             cCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHH
Confidence            34333333467788888765 7999999999 79999999999999999999988766654333

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=98.31  E-value=2.4e-07  Score=64.19  Aligned_cols=37  Identities=14%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      |+++|++.|||+++|+.++.++|+|.+++||.++.++
T Consensus       248 ~~v~I~ASGGIt~~ni~~~~~~GvD~i~vGs~i~~a~  284 (294)
T 3c2e_A          248 KHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTP  284 (294)
T ss_dssp             -CCEEEEECCCCC------CCCSCSEEECGGGTSSCC
T ss_pred             CCeEEEEECCCCHHHHHHHHHcCCCEEEEechhcCCC
Confidence            4589999999999999999999999999999988643

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=98.27  E-value=3.3e-06  Score=58.45  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ....++.++++++.. ++|+.++||| +.+++..++..|||++.+||+++..++
T Consensus       157 ~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e  209 (328)
T 2gjl_A          157 DIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRE  209 (328)
T ss_dssp             CCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSS
T ss_pred             cccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCcc
Confidence            346778888888765 6999999999 689999999999999999999988654

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.25  E-value=1.4e-06  Score=58.28  Aligned_cols=50  Identities=22%  Similarity=0.210  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      .++.++++++.. ++|+.+.|||+. +++.++.++|||++++||+++..++.
T Consensus       188 ~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~  238 (266)
T 2w6r_A          188 DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREID  238 (266)
T ss_dssp             CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-----
T ss_pred             CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCC
Confidence            478888888875 699999999995 99999999999999999999987643

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=98.23  E-value=2.2e-06  Score=59.66  Aligned_cols=47  Identities=21%  Similarity=0.247  Sum_probs=37.6

Q ss_pred             HHHHHHHH-hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         18 PKVKWLRE-NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        18 ~ki~~~~~-~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      +.++++.+ ..+++++++.|||+++|+.+|.++|+|.|++|+....++
T Consensus       241 ~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~isvG~lt~sa~  288 (298)
T 3gnn_A          241 DMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRISIGALTKDVR  288 (298)
T ss_dssp             HHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEEECGGGGTSCC
T ss_pred             HHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEECCeecCCC
Confidence            34444332 346799999999999999999999999999999876543

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.22  E-value=1.7e-06  Score=59.37  Aligned_cols=70  Identities=21%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             CCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHHHH-HHHHHHH
Q psy11601          8 GGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQAI-STLKSSV   77 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~-~~l~~~~   77 (82)
                      .|....|..++.++++++..+++||.+.|||+ .+++.+++.+|||.+.+|++++. .+++-..+ +.+++.+
T Consensus       223 sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~  295 (314)
T 2e6f_A          223 GGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIM  295 (314)
T ss_dssp             ESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHH
Confidence            34444456678888888876679999999995 89999999999999999999884 66654444 3344433

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=98.21  E-value=2.4e-06  Score=59.50  Aligned_cols=50  Identities=18%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      |.|+.+++..+..  .+++.+++.|||+++|+.+|++.|+|.|++|+.....
T Consensus       236 ~s~~~l~~av~~~--~~~v~leaSGGIt~~~i~~~A~tGVD~IsvGalthsa  285 (300)
T 3l0g_A          236 MSISEIKKAVDIV--NGKSVLEVSGCVNIRNVRNIALTGVDYISIGCITNSF  285 (300)
T ss_dssp             CCHHHHHHHHHHH--TTSSEEEEESSCCTTTHHHHHTTTCSEEECGGGTSSC
T ss_pred             CCHHHHHHHHHhh--cCceEEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence            5554454443322  3478999999999999999999999999999877653

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=98.20  E-value=1.6e-06  Score=60.08  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=38.1

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |.++.++++.+..  .+++++++.|||+++|+++|+++|+|.|++|+..-.
T Consensus       227 ~~~~~l~~av~~~--~~~v~ieaSGGIt~~~i~~~a~tGVD~IsvGalt~s  275 (287)
T 3tqv_A          227 FSGEDIDIAVSIA--RGKVALEVSGNIDRNSIVAIAKTGVDFISVGAITKH  275 (287)
T ss_dssp             CCHHHHHHHHHHH--TTTCEEEEESSCCTTTHHHHHTTTCSEEECSHHHHS
T ss_pred             CCHHHHHHHHHhh--cCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence            4554444443322  257999999999999999999999999999987654

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=98.16  E-value=3.7e-06  Score=59.16  Aligned_cols=49  Identities=22%  Similarity=0.332  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ++.++++++.. ++|+.++||| +.+++.++++.|||+|.+||.++..+++
T Consensus       197 ~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~  246 (369)
T 3bw2_A          197 LSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES  246 (369)
T ss_dssp             HHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred             HHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence            77788887765 6999999999 9999999999999999999999986654

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.13  E-value=2.5e-06  Score=58.42  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=47.0

Q ss_pred             CCCCCcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCHH
Q psy11601          9 GQKFMQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDRI   67 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~   67 (82)
                      |....|..++.++++++..+ ++||.+.||| +.+++.+++.+|||.+.+|++++. .+++-
T Consensus       221 g~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~  282 (311)
T 1jub_A          221 GAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIF  282 (311)
T ss_dssp             SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHH
T ss_pred             cccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHH
Confidence            44444556788888887653 7999999999 789999999999999999999874 55543

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=98.11  E-value=2.3e-06  Score=60.10  Aligned_cols=49  Identities=24%  Similarity=0.466  Sum_probs=38.0

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |.++.++++.+.  ..+++++++.|||+++|+.+|.++|+|.|++|+....
T Consensus       260 ~~~~~l~~av~~--l~~~v~ieaSGGIt~~~I~~~a~tGVD~isvGalt~s  308 (320)
T 3paj_A          260 FSLEMMREAVKI--NAGRAALENSGNITLDNLKECAETGVDYISVGALTKH  308 (320)
T ss_dssp             CCHHHHHHHHHH--HTTSSEEEEESSCCHHHHHHHHTTTCSEEECTHHHHS
T ss_pred             CCHHHHHHHHHH--hCCCCeEEEECCCCHHHHHHHHHcCCCEEEECceecC
Confidence            444444444332  2357999999999999999999999999999987654

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=98.08  E-value=1.8e-06  Score=59.87  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         15 DMMPKVKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        15 ~~~~ki~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      -..+.++++++.. +++++++.|||+++|+.++.++|+|.|++|+.++.+
T Consensus       237 ~~~e~l~~~v~~~~~~~~I~ASGGIt~~~i~~~a~~GvD~isvGsli~~a  286 (296)
T 1qap_A          237 FNTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVDFISVGALTKHV  286 (296)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHcCC
Confidence            3445566655543 469999999999999999999999999999987753

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=98.04  E-value=5.4e-06  Score=56.42  Aligned_cols=71  Identities=21%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             CCCCCCCC--CcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC---CCCHHHHHHHHHHHH
Q psy11601          5 PGFGGQKF--MQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN---CPDRIQAISTLKSSV   77 (82)
Q Consensus         5 pG~~gq~~--~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~---~~d~~~~~~~l~~~~   77 (82)
                      .|..|.+-  .+...+.++++|+.. +.|+.+-+|| +++++..+.+ +||++|+||++.+   ..++.+..+.+.+.+
T Consensus       174 ~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~~~~~~~~~~~  250 (252)
T 3tha_A          174 IGITGTKSVEEAILQDKVKEIRSFT-NLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLDIIMKDIEEIF  250 (252)
T ss_dssp             SCSSSCSHHHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred             CCCCCcccCCCHHHHHHHHHHHHhc-CCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHHHHHHHHHHHh
Confidence            46667652  233455677788775 6899999999 8899998876 6999999999875   346665555555443

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=98.03  E-value=6.4e-06  Score=56.30  Aligned_cols=54  Identities=24%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             CCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601          6 GFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         6 G~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      |+.|..  +.+...+.++++++.. ++|+.+-|||+ ++++.++  .|||++|+||+|.+
T Consensus       178 G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~  234 (271)
T 1ujp_A          178 GVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR  234 (271)
T ss_dssp             -----------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred             cccCCCCCCCccHHHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhc
Confidence            444432  3445567788888875 79999999998 9999997  89999999999986

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=97.99  E-value=7.9e-06  Score=56.81  Aligned_cols=50  Identities=14%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ..++-+.++++.. ++|+.++|||+ .+++..++..||+++.+||+++..++
T Consensus       163 ~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e  213 (326)
T 3bo9_A          163 TTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVE  213 (326)
T ss_dssp             CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSS
T ss_pred             cHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCcc
Confidence            4677788877765 68999999998 99999999999999999999887543

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.95  E-value=9.2e-06  Score=53.74  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHc-----C-CCEEEEeccccCCC-CHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKA-----G-ANWIVSGTAVINCP-DRIQAI   70 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~-----G-ad~vv~gs~i~~~~-d~~~~~   70 (82)
                      .++.++++++.. ++|+.+.|||+. +++.++.+.     | +|++++||+++..+ ++.+..
T Consensus       176 ~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~  237 (241)
T 1qo2_A          176 DFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMK  237 (241)
T ss_dssp             CHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHH
T ss_pred             CHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHH
Confidence            477788877765 689999999995 999999998     9 99999999999754 454443

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=97.95  E-value=6.5e-06  Score=58.28  Aligned_cols=71  Identities=23%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-CCHHHHH-HHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-PDRIQAI-STLKSSV   77 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-~d~~~~~-~~l~~~~   77 (82)
                      +.|....|-.++.++++++..+++||.+.|||. .+.+.+++.+|||.|.+|++++.. +.+.+.+ +.|.+.+
T Consensus       255 lSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m  328 (354)
T 4ef8_A          255 LGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVM  328 (354)
T ss_dssp             EEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHH
Confidence            345555567788899998876679999999995 889999999999999999997753 5544333 3344433

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=97.94  E-value=1.7e-05  Score=53.93  Aligned_cols=59  Identities=12%  Similarity=0.226  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        17 ~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      ++...++.+..| +.++++-|||+ ++.+..+.++ +|.|++|++|.+++||.+.+++|...
T Consensus       189 ~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~~l~~~  249 (251)
T 1i4n_A          189 KNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAENPRRFLEEMRAW  249 (251)
T ss_dssp             TTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHhC
Confidence            666667666554 47889999996 9999999999 99999999999999999999988753

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=97.88  E-value=1.3e-05  Score=55.61  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ...++-++++++.. ++|+.++|||+ .+++..++..|||++.+||+++..+
T Consensus       148 ~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~  198 (332)
T 2z6i_A          148 LTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAK  198 (332)
T ss_dssp             SCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBT
T ss_pred             ccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCc
Confidence            34667778877765 69999999998 9999999999999999999988754

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=97.88  E-value=6.2e-05  Score=48.13  Aligned_cols=57  Identities=25%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc-CCCCHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI-NCPDRIQAISTLK   74 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~-~~~d~~~~~~~l~   74 (82)
                      .+.|++++... +.|+.+.||++ ++++.++.+.|+|++++||+++ ++.++.+..+.++
T Consensus       163 ~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~  221 (237)
T 3cwo_X          163 TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLK  221 (237)
T ss_dssp             HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHH
Confidence            67788877765 68999999998 7899999999999999999985 4567777666554

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=97.88  E-value=1.4e-05  Score=56.76  Aligned_cols=60  Identities=20%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccc-cCCCCH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAV-INCPDR   66 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i-~~~~d~   66 (82)
                      +.|....|..++.++++++..+ ++||.+.|||. .+.+.+++.+|||.|.+|+++ +..+.+
T Consensus       275 lSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~  337 (367)
T 3zwt_A          275 LSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPV  337 (367)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHH
T ss_pred             cCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHH
Confidence            3444455566788999888764 79999999994 889999999999999999997 554443

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=97.88  E-value=1.2e-05  Score=56.79  Aligned_cols=61  Identities=23%  Similarity=0.277  Sum_probs=48.3

Q ss_pred             CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEecc-ccCCCCHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTA-VINCPDRI   67 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~-i~~~~d~~   67 (82)
                      +.|....|-.++.++++++..+ ++||.+.|||. .+.+.+++.+|||.|.+|++ ++..+.+.
T Consensus       252 lSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~  315 (345)
T 3oix_A          252 IGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIF  315 (345)
T ss_dssp             EEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHH
T ss_pred             cCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHH
Confidence            3445555666788899888764 69999999995 68888999999999999999 67655443

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=97.80  E-value=1.2e-05  Score=56.38  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=42.2

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      +..++.++++++..+++||.+.||| +.+.+.++++ |||.|.+|++++..+
T Consensus       182 ~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P  232 (350)
T 3b0p_A          182 PLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDP  232 (350)
T ss_dssp             CCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCG
T ss_pred             cccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCc
Confidence            3467788888887667999999999 7899999998 999999999876533

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=97.77  E-value=0.0001  Score=50.96  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             CcchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601         13 MQDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .+...+.++++++... ++|+.+-||| +.+.+.+++++|||.+++||++...
T Consensus       210 ~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d  262 (286)
T 3vk5_A          210 EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP  262 (286)
T ss_dssp             SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred             CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence            3445566777777653 6899999999 4688899999999999999999975

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.74  E-value=3.2e-05  Score=54.10  Aligned_cols=72  Identities=22%  Similarity=0.218  Sum_probs=54.1

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecc-ccCCCCHHHH-HHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTA-VINCPDRIQA-ISTLKSSVQ   78 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~-i~~~~d~~~~-~~~l~~~~~   78 (82)
                      +.|.+..|-.++-++++++..+.+||...|||. .+.+.+.+.+||+.|-++|+ +|..+..... .+.|.+.++
T Consensus       255 lSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~  329 (354)
T 3tjx_A          255 LGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMA  329 (354)
T ss_dssp             EEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             cCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHH
Confidence            446666677777788887777789999999995 78899999999999999998 5665654433 345555554

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.72  E-value=4e-05  Score=54.24  Aligned_cols=47  Identities=17%  Similarity=0.345  Sum_probs=37.7

Q ss_pred             hHHHHHHHH---HhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLR---ENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~---~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++.+.+++   +.. ++||.++||| +.+++..++.+|||.+.+||+++..
T Consensus       192 ~~~~i~~v~~~~~~~-~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t  242 (361)
T 3khj_A          192 QITAIEKCSSVASKF-GIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT  242 (361)
T ss_dssp             HHHHHHHHHHHHHHH-TCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTB
T ss_pred             cHHHHHHHHHHHhhc-CCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcC
Confidence            344455543   322 5899999999 7999999999999999999999874

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.70  E-value=8.8e-05  Score=49.72  Aligned_cols=50  Identities=18%  Similarity=0.363  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      .++-|+++.+.. .+|+.+.|||+ .++++.++.+||+-++++|+.+..++.
T Consensus        63 ~~~~i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~l  113 (243)
T 4gj1_A           63 QFALIEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDATL  113 (243)
T ss_dssp             CHHHHHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHH
T ss_pred             HHHHHHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCch
Confidence            345566666664 58999999995 599999999999999999999976554

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=97.70  E-value=3.4e-05  Score=52.09  Aligned_cols=50  Identities=28%  Similarity=0.265  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ...+.++++++...++|+.+-|||+- +.++++.+ |||.+|+||++.+..+
T Consensus       168 ~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~~~  218 (240)
T 1viz_A          168 GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFD  218 (240)
T ss_dssp             CCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHH
T ss_pred             ChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhCHH
Confidence            35667788887754689999999985 88999888 9999999999996544

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=97.69  E-value=0.00014  Score=48.63  Aligned_cols=70  Identities=10%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             CCCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHH-HHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         10 QKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTID-ECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        10 q~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~-~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.+.++.++...+ ++...+++++..-|||+..|.. .+.+.|+|++-+|+++.+++|+.+.+++|.+.+.+
T Consensus       153 ~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l~~~~~~  224 (226)
T 1w0m_A          153 SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE  224 (226)
T ss_dssp             HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHHHHHHHh
Confidence            5677776777666 4555456899999999977665 56788999999999999999999999999888765

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=97.67  E-value=7.9e-05  Score=50.83  Aligned_cols=45  Identities=24%  Similarity=0.483  Sum_probs=40.5

Q ss_pred             EEEEcCCCcc-----------cHHHHH-HcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         32 IEVDGGVGPN-----------TIDECA-KAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        32 i~~dGGI~~~-----------ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.+.-||++.           |..+.. ++|+|.+|+|++||+++||.++++++++.
T Consensus       193 ~~vTPGIr~~~~~~~~~~r~~tp~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~  249 (260)
T 3eww_A          193 LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA  249 (260)
T ss_dssp             EEEECSBCSSSEECTTSCEEBCHHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             EEECCCcCCCCCCCccCCCccCHHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence            6678899875           688999 99999999999999999999999999864

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=97.67  E-value=7.3e-05  Score=50.17  Aligned_cols=48  Identities=27%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ..+.++++++...++|+.+=|||+ ++.++++. .|||.+|+||++.+.+
T Consensus       167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p  215 (228)
T 3vzx_A          167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDF  215 (228)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCH
T ss_pred             CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCH
Confidence            466677777765358999999995 68888887 7999999999999743

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=97.67  E-value=9.1e-05  Score=51.60  Aligned_cols=50  Identities=12%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+...+.|+++++..+++||.++|||+ .+.+.+++.+|||.|.+|++++.
T Consensus       235 g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~  285 (349)
T 1p0k_A          235 GISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLK  285 (349)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             CccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            345667778877765579999999997 89999999999999999999764

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=97.63  E-value=7.9e-05  Score=52.92  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++-|.++++.  ..++|+.++||| +.+++..++++|||.+.+||.+...
T Consensus       196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t  246 (366)
T 4fo4_A          196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT  246 (366)
T ss_dssp             HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcC
Confidence            44555554432  136999999999 7899999999999999999998873

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=97.62  E-value=0.00022  Score=47.65  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=54.3

Q ss_pred             CCCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHH-HHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         10 QKFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTID-ECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        10 q~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~-~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.+.++.++...+ ++...+++++..-|||+..|.. .+.+.|+|++-+|+++.+++|+.+.+++|.+
T Consensus       156 ~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l~~  223 (225)
T 1hg3_A          156 SKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVS  223 (225)
T ss_dssp             TTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHHHh
Confidence            6788887777766 4555556899999999977665 5678899999999999999999998888765

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=97.61  E-value=5.1e-05  Score=52.41  Aligned_cols=51  Identities=16%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCCCHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      ++-++++++   ++||.+.||| +.+.+.++++ .|||.|.+|++++..++....+
T Consensus       174 ~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~  226 (318)
T 1vhn_A          174 WKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQI  226 (318)
T ss_dssp             GGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHH
T ss_pred             HHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHH
Confidence            344455544   6899999999 8899999998 7999999999988766655444

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=97.59  E-value=0.00014  Score=49.43  Aligned_cols=64  Identities=20%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             HHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCC----E--EEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         18 PKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGAN----W--IVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad----~--vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      +.++.+|+..++.++.+=| |....+..+..++|+|    .  +++|+.|+.++||.++++++++.+++..
T Consensus       182 ~e~~~ir~~~~~~~~l~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~~~i~~~~  252 (255)
T 3qw3_A          182 VALARVRARAPTLWFLVPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIR  252 (255)
T ss_dssp             HHHHHHHHHCSSCCEEECCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCeEEECCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            3456666665555565433 3344488999999999    4  9999999999999999999999887653

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=97.59  E-value=8.6e-05  Score=51.73  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .++-++++++.. ++||.+.||| +.+.+.++++.| ||.|.+|++++..+|+...+.
T Consensus       265 ~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~  321 (338)
T 1z41_A          265 QVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA  321 (338)
T ss_dssp             THHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             hHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHH
Confidence            456677777765 6899999999 799999999999 999999999988888766554

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=97.55  E-value=0.00012  Score=52.06  Aligned_cols=46  Identities=20%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .++.|.++.+...  ||.+||||+ .+++...+++|||.+.+|+.++..
T Consensus       188 ~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t  234 (361)
T 3r2g_A          188 MLTCIQDCSRADR--SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGS  234 (361)
T ss_dssp             HHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTB
T ss_pred             HHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence            6677777665442  999999995 999999999999999999999874

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=97.54  E-value=3.1e-05  Score=53.65  Aligned_cols=54  Identities=22%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHH
Q psy11601         14 QDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRI   67 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~   67 (82)
                      +..++.++++++..+ ++||.+.|||+ .+.+.+++++|||.|.+|+++.. .+++.
T Consensus       273 ~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~  329 (336)
T 1f76_A          273 LKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLI  329 (336)
T ss_dssp             HHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHH
Confidence            445677778777543 69999999995 89999999999999999998654 44443

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=97.54  E-value=0.00018  Score=50.80  Aligned_cols=54  Identities=17%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-++++++.. ++||.+.|||+++++.++++.| ||.|.+|++++..+++...++
T Consensus       283 ~~~~~~v~~~~-~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~  337 (364)
T 1vyr_A          283 EAFRQKVRERF-HGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  337 (364)
T ss_dssp             HHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHC-CCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhChhHHHHHH
Confidence            45677777776 6899999999999999999998 999999999998888876654

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=97.53  E-value=0.00015  Score=51.13  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .+-++++++.. ++||.+.|||+++++.++++.| ||.|.+|++++..+++...++
T Consensus       282 ~~~~~~i~~~~-~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~  336 (365)
T 2gou_A          282 VSFKRALREAY-QGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLR  336 (365)
T ss_dssp             HHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHC-CCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhCchHHHHHH
Confidence            35567777776 6899999999999999999999 999999999988888876654

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=97.53  E-value=0.00012  Score=51.90  Aligned_cols=54  Identities=13%  Similarity=0.122  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-++++++.. ++||.+.|||+++.+.++++.| ||.|.+|++++..+|+...++
T Consensus       288 ~~~~~~ik~~~-~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~  342 (377)
T 2r14_A          288 EGFREQMRQRF-KGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFR  342 (377)
T ss_dssp             TTHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhCchHHHHHH
Confidence            45567777776 6899999999999999999998 999999999998888876654

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=97.51  E-value=0.00016  Score=51.06  Aligned_cols=66  Identities=12%  Similarity=0.191  Sum_probs=48.2

Q ss_pred             cchHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQK   79 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~~   79 (82)
                      +..++-+.++++..+ ++||.++||| +.+++..++.+|||.+.+|++++..      +...+.++.+.+.++.
T Consensus       264 ~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~gv~~~~~~l~~el~~  337 (370)
T 1gox_A          264 PATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFEL  337 (370)
T ss_dssp             CCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            457777888877543 6999999999 5569999999999999999986532      1233455555555543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.49  E-value=0.00015  Score=56.73  Aligned_cols=64  Identities=20%  Similarity=0.190  Sum_probs=48.7

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC-CCCHH-HHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN-CPDRI-QAISTLKSSV   77 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~-~~~~~l~~~~   77 (82)
                      |..++-++++++..+++||.+.||| +.+.+.+++.+|||.+.+|++++. ..+.. .....|+..+
T Consensus       772 ~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l  838 (1025)
T 1gte_A          772 PIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALL  838 (1025)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHH
Confidence            3345778888877667999999999 889999999999999999999775 55433 3334455444

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=97.46  E-value=0.00017  Score=50.53  Aligned_cols=55  Identities=18%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .++-++++++.. ++||.+.||| +++++.++++.| ||.|.+|++++..+|+...+.
T Consensus       276 ~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~  332 (349)
T 3hgj_A          276 QVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAA  332 (349)
T ss_dssp             THHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHH
Confidence            455667777664 5899999999 699999999999 999999999998888765554

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=97.43  E-value=0.00031  Score=49.18  Aligned_cols=56  Identities=16%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .++-++++++.. ++||.+.||| +++.+.++++.| ||.|.+|++++..+|+...+.+
T Consensus       265 ~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~  322 (340)
T 3gr7_A          265 QVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAAR  322 (340)
T ss_dssp             THHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHH
T ss_pred             cHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHH
Confidence            456677777776 6999999999 589999999999 9999999999988887665543

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=97.41  E-value=0.0002  Score=47.40  Aligned_cols=51  Identities=25%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ...++.++++++.. ++|+.+.|||+ ++.+..++++|||.+++|+..+..++
T Consensus        65 ~~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~dp~  116 (247)
T 3tdn_A           65 GYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVENPS  116 (247)
T ss_dssp             CCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHHHCTH
T ss_pred             cccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHhhChH
Confidence            34567788888775 69999999997 57899999999999999999886555

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.00021  Score=48.34  Aligned_cols=59  Identities=10%  Similarity=0.030  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC---CCHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC---PDRIQAISTLKSSV   77 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~   77 (82)
                      .++-|+++.+.. ++|+.+.|||+..++..++ +||+.+++||+.+..   .+| +.++++.+.+
T Consensus        64 n~~~i~~i~~~~-~~pv~vgGGir~~~~~~~l-~Ga~~Viigs~a~~~~g~~~p-~~~~~~~~~~  125 (260)
T 2agk_A           64 NDDAAREALQES-PQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQL-KRLERLTELC  125 (260)
T ss_dssp             CHHHHHHHHHHS-TTTSEEESSCCTTTHHHHT-TTCSCEEECGGGBCTTCCBCH-HHHHHHHHHH
T ss_pred             CHHHHHHHHhcC-CceEEEeCCCCHHHHHHHh-cCCCEEEECcHHHhhcCCCCH-HHHHHHHHHh
Confidence            456677777765 5899999999999999999 999999999999964   014 3444544444

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=97.41  E-value=0.00011  Score=49.61  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ..+.++++++..++.|+.+=||| +++.++++.+ |||++|+||++++.
T Consensus       173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~  220 (235)
T 3w01_A          173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKD  220 (235)
T ss_dssp             CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHC
T ss_pred             CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecC
Confidence            35667777776546899999999 5677777776 99999999999973

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=97.40  E-value=0.00011  Score=49.50  Aligned_cols=47  Identities=15%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ...+.++++++...++|+.+-|||+- +.++++.+ |||.+++||++.+
T Consensus       176 ~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~  223 (234)
T 2f6u_A          176 GNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE  223 (234)
T ss_dssp             CCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred             chHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHh
Confidence            35667778887754689999999985 89999988 9999999999985

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=97.40  E-value=0.00055  Score=47.42  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-----CCCHHHHHHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-----~~d~~~~~~~l~~~~~~   79 (82)
                      .+..++-|.++++..+++||.++|||. .+.+...+..|||.+.+|++++.     .+...+.++.+++.++.
T Consensus       240 g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~~~G~~gv~~~~~~l~~el~~  312 (332)
T 1vcf_A          240 GIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRT  312 (332)
T ss_dssp             SCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345677788887775579999999994 67888888999999999988652     12233445555555443

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*

Probab=97.38  E-value=0.0007  Score=48.01  Aligned_cols=63  Identities=24%  Similarity=0.363  Sum_probs=48.3

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCc--ccHHHHHHcCCC------EEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAGAN------WIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~--~ni~~~~~~Gad------~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      +.++++|+..+++++ +.-||..  .+..++.+.|+|      .+++|++|+.++||.++++++++.+.+.+
T Consensus       278 ~el~~IR~~~~~~~i-LtPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~~a~  348 (353)
T 2ffc_A          278 DEIKKIRELFPDCYI-LAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVL  348 (353)
T ss_dssp             HHHHHHHHHCTTCCE-EECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeE-EeCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            444555665555554 3667754  568889999998      89999999999999999999998887543

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=97.36  E-value=0.00021  Score=50.32  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .++-++++++.. ++||.+.||| +++.+.++++.| ||.|.+|++++..+|+...+.+
T Consensus       283 ~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~  340 (363)
T 3l5l_A          283 MGPIAERVRREA-KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAK  340 (363)
T ss_dssp             THHHHHHHHHHH-TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHH
T ss_pred             hHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHHH
Confidence            345566677665 5899999999 599999999999 9999999999988887665543

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.35  E-value=0.0003  Score=46.39  Aligned_cols=50  Identities=20%  Similarity=0.308  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ..++.++++++.. ++|+.+.|||+ .+.+.++.++|||.+++|+..+..++
T Consensus        62 ~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~  112 (252)
T 1ka9_F           62 ILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPE  112 (252)
T ss_dssp             HHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTH
T ss_pred             ccHHHHHHHHHhC-CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhCcH
Confidence            3456677787764 79999999998 78999999999999999999886543

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=97.34  E-value=0.00011  Score=53.12  Aligned_cols=71  Identities=17%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             CCCCCCCcchHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc-CCCCHHHHH-HHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI-NCPDRIQAI-STLKSSV   77 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~-~~~d~~~~~-~~l~~~~   77 (82)
                      +.|....|..++-|+++++..+ ++||.+.|||+ .+.+.+++.+|||.|.+|++++ ..+.+...+ +.|.+.+
T Consensus       322 lSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l  396 (415)
T 3i65_A          322 VSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL  396 (415)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHH
Confidence            4455555677888999888653 69999999996 6888899999999999999975 434443332 3344433

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.31  E-value=0.00033  Score=51.16  Aligned_cols=47  Identities=15%  Similarity=0.253  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++-+.++.+.  ..++|+.++||| +.+++..++++|||.+.+||++..
T Consensus       317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~  366 (490)
T 4avf_A          317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAG  366 (490)
T ss_dssp             HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTT
T ss_pred             HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhc
Confidence            45556665542  136999999999 799999999999999999999876

>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A

Probab=97.30  E-value=0.00024  Score=50.37  Aligned_cols=63  Identities=16%  Similarity=0.251  Sum_probs=42.9

Q ss_pred             HHHHHHHhCCCCcE-----EEEcCCCcccHHHH--HHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         19 KVKWLRENYPTLNI-----EVDGGVGPNTIDEC--AKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        19 ki~~~~~~~~~~~i-----~~dGGI~~~ni~~~--~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      .++++|+..+++++     -+.||...+.+...  .+.|++.+++|++|+.++||.++++++++.++.++
T Consensus       269 e~~~iR~~~~~~~iLtPGIGaqgGdq~rv~tp~~a~~~gadiIvVGR~I~~A~dp~~Aa~~i~~ei~~~l  338 (352)
T 2fds_A          269 EMKIIRNKFPDSYILSPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQIF  338 (352)
T ss_dssp             HHHHHHHHSTTCCEEECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEcCccccccCcHHHhhCHHhHhhcCceEEEECHHHccCCCHHHHHHHHHHHHHHHH
Confidence            34445554456666     56777655545544  46799999999999999999999999998877553

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=97.29  E-value=0.0006  Score=47.19  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=38.6

Q ss_pred             CCCCcchHHHHHHHHHh-CCCCcEEEEcCCCcccHHHHHH-cCCCEEEEe
Q psy11601         10 QKFMQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECAK-AGANWIVSG   57 (82)
Q Consensus        10 q~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~g   57 (82)
                      ++-.++.++.|+++.+. ..+++|.+.|||+.+|+.++.+ +|++.|=+.
T Consensus       189 ~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~H~S  238 (287)
T 3iwp_A          189 DSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCS  238 (287)
T ss_dssp             SSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHHHHCCSEEEEC
T ss_pred             CCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHhhCCCEEeEC
Confidence            34457788888887664 3469999999999999999987 999988655

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=97.25  E-value=0.00047  Score=49.52  Aligned_cols=48  Identities=17%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .+.-+.++.+.  ..++||.++||| +.+++..++.+||+.+.+|+++...
T Consensus       231 ~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t  281 (400)
T 3ffs_A          231 QITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT  281 (400)
T ss_dssp             HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTB
T ss_pred             HHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcC
Confidence            45556665543  136999999999 5999999999999999999998863

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=97.22  E-value=0.00053  Score=48.73  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=44.4

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++++++.. ++||.+.|||+++.+.++++.| ||.|.+|++++..+++...++
T Consensus       299 ~~~ir~~~-~iPvi~~G~it~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~  350 (379)
T 3aty_A          299 VAWVRGSY-SGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQ  350 (379)
T ss_dssp             HHHHHTTC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHC-CCcEEEECCCCHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHH
Confidence            77777776 6899999999999999999998 999999999888888766554

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=97.20  E-value=0.00017  Score=52.42  Aligned_cols=57  Identities=16%  Similarity=0.029  Sum_probs=44.1

Q ss_pred             cchHHHHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccc-cCCCCHHHHH
Q psy11601         14 QDMMPKVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAV-INCPDRIQAI   70 (82)
Q Consensus        14 ~~~~~ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i-~~~~d~~~~~   70 (82)
                      |..++-++++++.. .++||.+.||| +.+.+.+.+.+|||.|-+++++ +..+.+...+
T Consensus       357 ~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i  416 (443)
T 1tv5_A          357 DISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQI  416 (443)
T ss_dssp             HHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHH
Confidence            44567788888765 37999999998 6889999999999999999995 4345444333

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=97.17  E-value=0.00051  Score=48.59  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             HHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         21 KWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +++++.. +.|+.+.||++++.+.++++.| +|.|.+|++++..+|+...++
T Consensus       280 ~~ik~~~-~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~  330 (361)
T 3gka_A          280 QQLKAAF-GGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFK  330 (361)
T ss_dssp             HHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHc-CCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence            4444443 4799999999999999999998 999999999998888876554

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0013  Score=44.43  Aligned_cols=59  Identities=15%  Similarity=0.035  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHhCC---CCcEEEEcCC-CcccHHHHHHc--CCCEEEEeccc--cC-C-CCHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYP---TLNIEVDGGV-GPNTIDECAKA--GANWIVSGTAV--IN-C-PDRIQAISTLK   74 (82)
Q Consensus        16 ~~~ki~~~~~~~~---~~~i~~dGGI-~~~ni~~~~~~--Gad~vv~gs~i--~~-~-~d~~~~~~~l~   74 (82)
                      .++-++++++..+   ++|+.+.||| +++.+..+.+.  |++.+++|+++  |. . -++.+..+.++
T Consensus       189 d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~~~~  257 (260)
T 2agk_A          189 DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRWNE  257 (260)
T ss_dssp             CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHHHHH
Confidence            5777777777653   6899999999 56999999988  99999999995  65 3 35555555444

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.17  E-value=0.00059  Score=49.77  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      +..+..++++++.. ++|+.++|||+ .+++..++.+|||.+.+|+++...+
T Consensus       344 ~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~  394 (514)
T 1jcn_A          344 GTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATT  394 (514)
T ss_dssp             HHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTST
T ss_pred             hhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCC
Confidence            34566677777654 69999999996 7999999999999999999987643

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=97.17  E-value=0.0011  Score=48.29  Aligned_cols=63  Identities=21%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             HHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCE------EEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         18 PKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANW------IVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~------vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +.++.+|+..++.++.+=| |....+..+..++|+|.      +++|+.|+.++||.++++++++.+++.
T Consensus       183 ~e~~~ir~~~~~~~~l~PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~  252 (453)
T 3qw4_B          183 VALARVRARAPTLWFLVPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAI  252 (453)
T ss_dssp             HHHHHHHHHCSSCCEEECCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEECCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHH
Confidence            4456666665555666545 44556899999999998      999999999999999999999887653

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=97.14  E-value=0.00095  Score=47.74  Aligned_cols=54  Identities=24%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-++++++.. ++||.+.|||+++.+.++++.| ||.|.+|++++..+++...++
T Consensus       308 ~~~~~~vk~~~-~iPvi~~G~i~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~  362 (402)
T 2hsa_B          308 ARLMRTLRNAY-QGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIK  362 (402)
T ss_dssp             HHHHHHHHHHC-SSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHCCCCceeeecHHHHhCchHHHHHH
Confidence            45566777776 6899999999999999999998 999999999988888876654

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=97.13  E-value=0.00075  Score=47.78  Aligned_cols=67  Identities=13%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             CcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc-C-----CCCHHHHHHHHHHHHHH
Q psy11601         13 MQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI-N-----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        13 ~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~-~-----~~d~~~~~~~l~~~~~~   79 (82)
                      .+..++-|.++++. .+++||.++|||. ...+...+..|||.+.+|++++ .     .+...+.++.+++.++.
T Consensus       255 ~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~  329 (352)
T 3sgz_A          255 VSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHR  329 (352)
T ss_dssp             SCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            45677778777654 3469999999994 5788888899999999998854 2     22334455666665543

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.11  E-value=0.00069  Score=44.64  Aligned_cols=49  Identities=27%  Similarity=0.360  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      ..++.++++++.. ++|+.+.|||+ ++.+.++.++|||.+++|+..+..+
T Consensus        61 ~~~~~i~~i~~~~-~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p  110 (253)
T 1thf_D           61 TMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSINTAAVENP  110 (253)
T ss_dssp             HHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred             ccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhCh
Confidence            4566677777764 69999999998 4779999999999999999988644

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=97.10  E-value=0.00092  Score=46.70  Aligned_cols=45  Identities=24%  Similarity=0.483  Sum_probs=39.4

Q ss_pred             EEEEcCCCcc-----------cHHHHH-HcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         32 IEVDGGVGPN-----------TIDECA-KAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        32 i~~dGGI~~~-----------ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.+.-||++.           +-.+.+ ++|+|.+|+|+.|++++||.++++++++.
T Consensus       245 l~vTPGIrp~~~~~~~g~qv~TP~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~  301 (312)
T 3g3d_A          245 LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA  301 (312)
T ss_dssp             EEEECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred             EEEcCCcCCCcCCCCcCCcccCHHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence            6678899874           367788 99999999999999999999999999874

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=97.09  E-value=0.0009  Score=47.98  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         27 YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        27 ~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ++++.|++.|||+++++.++.+.|+|.|.+|+.+.+.
T Consensus       268 ~~~~~I~aSggl~~~~i~~l~~~GvD~~gvGt~l~~~  304 (398)
T 2i1o_A          268 RSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA  304 (398)
T ss_dssp             CTTSEEEEESSCCHHHHHHHHHTTCCEEEECHHHHTC
T ss_pred             CCceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccCCC
Confidence            3578999999999999999999999999999987653

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=97.09  E-value=0.0014  Score=46.44  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-----CCCHHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-----~~d~~~~~~~l~~~~~~   79 (82)
                      ...-|.++++..+++||.++|||. ...+...+..|||.+.+|+.++.     .+...+.++.+.+.++.
T Consensus       254 t~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~~G~~~v~~~l~~l~~eL~~  323 (368)
T 3vkj_A          254 TAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFELKA  323 (368)
T ss_dssp             HHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            445567777766679999999976 58888889999999999988652     22233455555555543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.04  E-value=0.00055  Score=51.07  Aligned_cols=54  Identities=11%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-++++++.. ++|+.+.||| +++++.++++.| ||.|.+|++++..+|+...++
T Consensus       269 ~~~~~~i~~~~-~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~  324 (671)
T 1ps9_A          269 SWVTRKLKGHV-SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ  324 (671)
T ss_dssp             HHHHHHHTTSC-SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHH
Confidence            46667777765 6999999999 899999999998 999999999998888866554

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=97.04  E-value=0.00069  Score=48.08  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=36.4

Q ss_pred             HHHHHHHHHh--CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         17 MPKVKWLREN--YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        17 ~~ki~~~~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++-+.++++.  ..++||.++|||+ .+++..++.+|||.+.+|+++..
T Consensus       242 ~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~  290 (404)
T 1eep_A          242 ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG  290 (404)
T ss_dssp             HHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHT
T ss_pred             HHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhc
Confidence            4444554442  1269999999997 89999999999999999999854

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.04  E-value=0.0016  Score=43.57  Aligned_cols=57  Identities=21%  Similarity=0.365  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCP-DRIQAISTL   73 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l   73 (82)
                      .++-++++++..+++|+.+.||++ .+++..+ +.+++++++|++++... ++++..+-|
T Consensus       183 d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~g~i~l~ea~~~l  241 (243)
T 4gj1_A          183 NVRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKALLDGVFSVEEGIRCL  241 (243)
T ss_dssp             CHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHTTSSCHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHCCCCCHHHHHHHh
Confidence            456667777776679999999995 6888887 56799999999998643 666655433

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=97.04  E-value=0.00066  Score=48.05  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=41.4

Q ss_pred             HHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         21 KWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +++++.. +.|+.+.||++++.+.++++.| +|.|.+|++++..+|+...++
T Consensus       272 ~~ik~~~-~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~~  322 (362)
T 4ab4_A          272 PLIKEAF-GGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLA  322 (362)
T ss_dssp             HHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence            4444443 4799999999999999999998 999999999998888766554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.00  E-value=0.0012  Score=48.42  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=36.5

Q ss_pred             hHHHHHHH---HHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWL---RENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~---~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.-+.++   .+.. ++|+.++||| +.+.+...+++||+.+.+|+++..
T Consensus       344 ~~~~l~~v~~~~~~~-~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~  393 (511)
T 3usb_A          344 QLTAVYDCATEARKH-GIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG  393 (511)
T ss_dssp             HHHHHHHHHHHHHTT-TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             cHHHHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhc
Confidence            44445444   3332 5999999999 889999999999999999999755

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=96.98  E-value=0.0012  Score=48.07  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHhCC-CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYP-TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        16 ~~~ki~~~~~~~~-~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      .++...++.+..| +.++++-|||+ ++.+..+.++ +|.|.+|++|.+++|+.+.+++|..
T Consensus       194 dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l~~  254 (452)
T 1pii_A          194 DLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRVLL  254 (452)
T ss_dssp             CTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHH
Confidence            4677777666543 57899999997 8999999999 9999999999999999999998873

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.95  E-value=0.0019  Score=47.86  Aligned_cols=56  Identities=7%  Similarity=0.082  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCC-CHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCP-DRIQAIST   72 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~-d~~~~~~~   72 (82)
                      .++-++++++.. ++|+.+.||| +++.+..+.+ .|++.+++|++++..+ +..+..+.
T Consensus       484 d~~li~~l~~~~-~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~  542 (555)
T 1jvn_A          484 DLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEY  542 (555)
T ss_dssp             CHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHhC-CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHH
Confidence            577788888775 6899999999 7899999998 8999999999998755 44444333

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=96.94  E-value=0.0012  Score=46.85  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++++++.. ++||.+.|||+.+.+.++++.| ||.|.+|++++..+++...++
T Consensus       293 ~~~vr~~~-~iPvi~~G~i~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~  344 (376)
T 1icp_A          293 LVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE  344 (376)
T ss_dssp             SHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHc-CCCEEEeCCCCHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHH
Confidence            45566665 5899999999999999999998 999999999988888776654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.88  E-value=0.0015  Score=47.77  Aligned_cols=47  Identities=17%  Similarity=0.240  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHhC--CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENY--PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~--~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++-+.++.+..  .++|+.++||| +.+.+..++++|||.+.+|+++..
T Consensus       319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~  368 (496)
T 4fxs_A          319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAG  368 (496)
T ss_dssp             HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhc
Confidence            344444444321  25899999999 589999999999999999999876

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.86  E-value=0.00074  Score=47.89  Aligned_cols=48  Identities=17%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +..++-+.++++.. +.||.++||| +.+++..++.+|||.+.+|++++.
T Consensus       264 ~~~~~~l~~v~~~~-~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~  312 (380)
T 1p4c_A          264 ISPMEVLAQSVAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLY  312 (380)
T ss_dssp             CCGGGTHHHHHHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             cCHHHHHHHHHHHc-CCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHH
Confidence            34566677776654 3599999999 556999999999999999998653

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.81  E-value=0.0039  Score=40.86  Aligned_cols=67  Identities=12%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC---CCHHHHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC---PDRIQAISTLKSSVQ   78 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~   78 (82)
                      |-.|+.|.-+.++.+  + .  .+.|+...||++++|+.+.+..++.++=+.|.+=.+   .|+. .+++|.+.++
T Consensus       128 gGtG~~fdW~~l~~~--~-~--~~~p~~LAGGL~peNV~~ai~~~p~gVDvsSGvE~~pG~KD~~-ki~~fi~~~r  197 (203)
T 1v5x_A          128 PGSGEAYPRAWAKPL--L-A--TGRRVILAGGIAPENLEEVLALRPYALDLASGVEEAPGVKSAE-KLRALFARLA  197 (203)
T ss_dssp             TTSCCCCCGGGGHHH--H-H--TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEEETTEECHH-HHHHHHHHHH
T ss_pred             CCCCCccCHHHHHhh--h-c--cCCcEEEECCCCHHHHHHHHhcCCCEEEeCCceecCCCCcCHH-HHHHHHHHHH
Confidence            667889988777542  1 1  246899999999999987777799999999998642   3543 5555555554

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=96.81  E-value=0.0015  Score=42.94  Aligned_cols=68  Identities=13%  Similarity=0.178  Sum_probs=48.2

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC---CCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC---PDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~   78 (82)
                      +|..|+.|.-+.++.+.     ..+.|+...||++++|+.+.++ .++.++=+.|.+=.+   .|+. .+++|.+.++
T Consensus       132 ~GGtG~~fdw~~l~~~~-----~~~~p~~LAGGL~peNV~~ai~~~~p~gVDvsSGvE~~pG~KD~~-ki~~fi~~~r  203 (205)
T 1nsj_A          132 YGGSGKTFDWSLILPYR-----DRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHD-SIKMFIKNAK  203 (205)
T ss_dssp             SSSCCSCCCGGGTGGGG-----GGSSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEEETTEECHH-HHHHHHHHHH
T ss_pred             CCCCCCccCHHHHHhhh-----cCCCcEEEECCCCHHHHHHHHHhcCCCEEEECCceecCCCCcCHH-HHHHHHHHHh
Confidence            47789998876664321     1246899999999999987654 699999999998642   3543 5555555443

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=96.77  E-value=0.0031  Score=43.07  Aligned_cols=45  Identities=20%  Similarity=0.365  Sum_probs=38.1

Q ss_pred             EEEEcCCCc-----------ccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHHH
Q psy11601         32 IEVDGGVGP-----------NTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKSS   76 (82)
Q Consensus        32 i~~dGGI~~-----------~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~~   76 (82)
                      +.+.=||++           .+-.+..++|+|.+|+|+.|++ ++||.++++++++.
T Consensus       198 ~~vTPGIr~~~~g~~~gdQ~rTP~~Ai~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~  254 (267)
T 3gdm_A          198 LIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKA  254 (267)
T ss_dssp             EEEECSEECCCTTCTTGGGSEEHHHHHHTTCSEEEECGGGTSTTCCHHHHHHHHHHH
T ss_pred             EEECCCcCCCcCCCccccCCCCHHHHHHcCCCEEEEChhhccCCCCHHHHHHHHHHH
Confidence            445667765           3777888999999999999999 99999999998864

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=96.73  E-value=0.0022  Score=45.31  Aligned_cols=67  Identities=13%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             CCcchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQ   78 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~   78 (82)
                      +.+..++-+.++++.. .++||.++|||.- +.+...+..|||.+.+|+.++..      +...+.++.+++.++
T Consensus       266 ~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~  340 (368)
T 2nli_A          266 EAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLT  340 (368)
T ss_dssp             SCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            3456778888877653 3699999999964 68888889999999999885432      123344555555544

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=96.73  E-value=0.0018  Score=45.50  Aligned_cols=55  Identities=9%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .++-++++++.. ++||.+.|||+ ++.+.++++.| +|.|.+|++++..+|+...++
T Consensus       265 ~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          265 QVKYAETIKKRC-NIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             THHHHHHHHHHH-TCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             eehHHHHHHHhc-CcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence            455566777765 58999999995 89999999998 999999999998888766543

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=96.71  E-value=0.01  Score=41.60  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..+.+..+.. ++|+.++|||. ...+...+.+|||.+.+|+.++.
T Consensus       213 ~~v~~~~~~~-~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~  257 (351)
T 2c6q_A          213 MECADAAHGL-KGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG  257 (351)
T ss_dssp             HHHHHHHHHT-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             HHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhc
Confidence            3444433332 59999999998 89999999999999999999863

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=96.69  E-value=0.0027  Score=41.51  Aligned_cols=45  Identities=16%  Similarity=0.323  Sum_probs=38.4

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +.++++++.. ++|+.+.|||+ ++.+..++++|||.+++|+..+..
T Consensus        64 ~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~  109 (244)
T 2y88_A           64 ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAALEN  109 (244)
T ss_dssp             HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred             HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhC
Confidence            6778888775 68999999998 478999999999999999987753

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=96.68  E-value=0.0028  Score=41.60  Aligned_cols=45  Identities=18%  Similarity=0.390  Sum_probs=38.1

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      +.++++++.. ++|+.+.|||+ ++.+..++++|||.+++|+..+..
T Consensus        65 ~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~  110 (244)
T 1vzw_A           65 ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET  110 (244)
T ss_dssp             HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred             HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhC
Confidence            6677787775 69999999998 477999999999999999987743

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.68  E-value=0.0029  Score=46.86  Aligned_cols=48  Identities=19%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCc------------ccHHHHHHcCCCEEEEeccccC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGP------------NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~------------~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +..++.|+++++.. .+||.+.|||+.            +++..+.++|||.+++||..+.
T Consensus       313 ~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~~~  372 (555)
T 1jvn_A          313 TPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVY  372 (555)
T ss_dssp             CHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             chHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHHhh
Confidence            34577778877765 689999999987            5699999999999999998764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.65  E-value=0.0025  Score=46.12  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             CCcEEEEcCC-CcccHHHHHHcCCCEEEEecccc
Q psy11601         29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      ++|+.++||| +.+.+..++++|||.+.+|+++.
T Consensus       340 ~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l  373 (494)
T 1vrd_A          340 DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFA  373 (494)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHh
Confidence            6999999999 88999999999999999999985

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=96.64  E-value=0.0036  Score=44.38  Aligned_cols=66  Identities=15%  Similarity=0.172  Sum_probs=46.0

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC------CCCHHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN------CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~------~~d~~~~~~~l~~~~~~   79 (82)
                      ....+-+.+++...+++||.++|||. ...+...+.+|||.+.+|++++.      .+...+.++.+++.++.
T Consensus       263 ~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~  335 (365)
T 3sr7_A          263 QTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRL  335 (365)
T ss_dssp             CBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            33455666666555579999999995 67788888999999999998653      12234455556555543

>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*

Probab=96.62  E-value=0.0074  Score=42.63  Aligned_cols=62  Identities=18%  Similarity=0.272  Sum_probs=42.5

Q ss_pred             HHHHHHhCCCCcEEEEc-CCCcccHHHHHH------cCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         20 VKWLRENYPTLNIEVDG-GVGPNTIDECAK------AGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dG-GI~~~ni~~~~~------~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      ++.+|+..|++++++=| |-...+..++..      .|++.+++|+.|+.++||.++++++++.+++.+
T Consensus       268 ~~~iR~~~p~~~iLtPGIGAQggDq~rv~tp~~a~~~g~~~ivVGR~I~~A~dP~~Aa~~i~~ei~~~l  336 (342)
T 3n3m_A          268 MNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAIL  336 (342)
T ss_dssp             HHHHHHHSTTCCEEECCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeCCCCcCCCCHHHHHhhhhhhhcCceEEEcChhhhcCCCHHHHHHHHHHHHHHHH
Confidence            44555554566655432 333445555432      578899999999999999999999988876543

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=96.62  E-value=0.0037  Score=42.66  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHH
Q psy11601         16 MMPKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus        16 ~~~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      .++.-.++....| ++.+++-+|| +++.+..+.++|+|.|.+|+++.+++|+.+
T Consensus       190 dl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~~~  244 (258)
T 4a29_A          190 NKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEKIK  244 (258)
T ss_dssp             CHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTHHH
T ss_pred             CHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcHHH
Confidence            3555566666654 4677888999 678999999999999999999999888743

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=96.58  E-value=0.0039  Score=43.97  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.0

Q ss_pred             CcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         30 LNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        30 ~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +||.++||| +.+++..++.+|||.+.+|+++..
T Consensus       278 ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~  311 (393)
T 2qr6_A          278 VHIIADGSIENSGDVVKAIACGADAVVLGSPLAR  311 (393)
T ss_dssp             CEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGG
T ss_pred             eEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence            899999999 588999999999999999999643

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=96.57  E-value=0.0038  Score=41.36  Aligned_cols=45  Identities=24%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .++.++++++.. ++|+.+.|||+ .+.+..+.++|||.+++|+.++
T Consensus        62 ~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~  107 (266)
T 2w6r_A           62 DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH  107 (266)
T ss_dssp             CHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred             cHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence            567788888765 69999999987 4889999999999999999988

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.56  E-value=0.0039  Score=40.44  Aligned_cols=50  Identities=26%  Similarity=0.388  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCC
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPD   65 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d   65 (82)
                      ..++.++++++.. ++|+.+.||++ ++.+.++.++|||.+.+++..+..++
T Consensus        64 ~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~~~  114 (253)
T 1h5y_A           64 TFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQ  114 (253)
T ss_dssp             HHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTH
T ss_pred             ccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhCcH
Confidence            4567778888775 68999999987 57889999999999999998775443

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=96.56  E-value=0.0036  Score=43.27  Aligned_cols=64  Identities=13%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             hHHHHHH-HHHhCCCCcEEEEc-CC-CcccHHHHHHc--CCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         16 MMPKVKW-LRENYPTLNIEVDG-GV-GPNTIDECAKA--GANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        16 ~~~ki~~-~~~~~~~~~i~~dG-GI-~~~ni~~~~~~--Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      .++++.+ +++.+|++.+..-| || +++.+..+++.  |+++|...|++-+.+ +++++.++-+.++..
T Consensus       213 ~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~p-~e~ai~~~~~~fk~~  281 (286)
T 2p10_A          213 LINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSMERLP-AEEAIRSQTLAFKAI  281 (286)
T ss_dssp             HHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcCC-HHHHHHHHHHHHHhc
Confidence            3333333 34457777666666 66 68899999999  999999999999887 999998888877653

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=96.53  E-value=0.0034  Score=41.20  Aligned_cols=50  Identities=18%  Similarity=0.395  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ..++.+++++ .. ++|+.+.|||+. +.+..+.++|||.+++|+..+..++.
T Consensus        61 ~~~~~i~~i~-~~-~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~  111 (241)
T 1qo2_A           61 ENLPVLEKLS-EF-AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSF  111 (241)
T ss_dssp             TTHHHHHHGG-GG-GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred             hhHHHHHHHH-hc-CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhChHH
Confidence            4466777776 43 689999999985 77889999999999999998876654

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.48  E-value=0.0082  Score=41.69  Aligned_cols=46  Identities=17%  Similarity=0.422  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++-+.++++.. ++||.++|||. ...+...+..|||.+.+|++++.
T Consensus       198 ~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~  244 (336)
T 1ypf_A          198 QLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAG  244 (336)
T ss_dssp             HHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTT
T ss_pred             HHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhc
Confidence            466777777765 79999999996 78899999999999999999874

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=96.43  E-value=0.0049  Score=43.94  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=47.2

Q ss_pred             CCcchHHHHHHHHHhC-CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKWLRENY-PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQ   78 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~-~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~   78 (82)
                      +.+..++-+.++++.. .++||.++|||.- +.+...+..|||.+.+|++++..      +...+.++.+++.++
T Consensus       289 ~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~~g~~gv~~~l~~l~~el~  363 (392)
T 2nzl_A          289 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFR  363 (392)
T ss_dssp             TCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            3466777788877643 3699999999964 78888889999999999886532      123344455555444

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=96.31  E-value=0.014  Score=39.11  Aligned_cols=56  Identities=18%  Similarity=0.219  Sum_probs=38.5

Q ss_pred             CcchHHHHHHHHHh-CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHH
Q psy11601         13 MQDMMPKVKWLREN-YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus        13 ~~~~~~ki~~~~~~-~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      ..+.++.|+++.+. ..++.|.+=|||+.+|+..+. ..|++-|=....+..+.||.+
T Consensus       161 a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s~i~~~~~~~~~  218 (224)
T 2bdq_A          161 IIENIKHIKALVEYANNRIEIMVGGGVTAENYQYICQETGVKQAHGTRITQMAGDPLE  218 (224)
T ss_dssp             GGGGHHHHHHHHHHHTTSSEEEECSSCCTTTHHHHHHHHTCCEEEETTCC--------
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEeCCCCCHHHHHHHHHhhCCCEEccccccCCCCCcch
Confidence            47788888887664 346889999999999999998 689998875444555666643

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=96.15  E-value=0.024  Score=37.70  Aligned_cols=69  Identities=13%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccC--CCCHHHHHHHHHHHHHHh
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVIN--CPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~--~~d~~~~~~~l~~~~~~~   80 (82)
                      +|..|+.|.-+.++.+   ..   +.|+...||++++|+.+.++ .++.+|=+.|.+=.  -.|+ +.+++|.+..++.
T Consensus       155 ~GGtG~~fDW~~~~~~---~~---~~p~iLAGGL~peNV~~Ai~~~~P~gVDVsSGVEs~G~KD~-~KI~~Fi~~vr~v  226 (228)
T 4aaj_A          155 GAGSGKLHDLRVSSLV---AR---KIPVIVAGGLNAENVEEVIKVVKPYGVDVSSGVEKYGIKDP-KLVEEFVRRAKNV  226 (228)
T ss_dssp             -------CCCHHHHHH---HH---HSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEETTEECH-HHHHHHHHHHHHC
T ss_pred             CCCCcCcCChHHHHHh---hh---cCCeEEECCCCHHHHHHHHHHhCCCEEEeCCCCCCCCCcCH-HHHHHHHHHHhcc
Confidence            4667888876544433   33   25899999999999998765 78888888888743  2354 3566666665543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.12  E-value=0.0063  Score=45.97  Aligned_cols=54  Identities=22%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++-++++++.. ++|+.+.||| +++.+.++++.| ||.|.+|++++..+|+...++
T Consensus       280 ~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~  335 (729)
T 1o94_A          280 IPWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE  335 (729)
T ss_dssp             HHHHHHHHTTC-SSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHC-CCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHH
Confidence            45566777765 6999999999 599999999998 999999999988888766553

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=96.10  E-value=0.0095  Score=42.82  Aligned_cols=51  Identities=14%  Similarity=0.337  Sum_probs=41.0

Q ss_pred             HHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHH
Q psy11601         20 VKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        20 i~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++++++... ++||.+.||| +++.+.++++. +|.|.+|++++..+|+...++
T Consensus       308 a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPdlv~ki~  360 (419)
T 3l5a_A          308 NQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVTEPDFVHKLA  360 (419)
T ss_dssp             HHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcHHHHHHH
Confidence            444554432 5899999998 79999999999 999999999988888766554

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.08  E-value=0.011  Score=42.52  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHh--CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLREN--YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++-++++...  ..++|+.++|||+ .+.+..++++||+.+++|+++..
T Consensus       321 ~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~  370 (491)
T 1zfj_A          321 QVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG  370 (491)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             cHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence            34445554431  1268999999985 77899999999999999999874

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=95.94  E-value=0.018  Score=39.06  Aligned_cols=62  Identities=13%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             CCCCCcchHHHHHH-HHHh---------CCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN---------YPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~---------~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      |+.-.|+..+++.. +|+.         ...++|.-=|+++++|+.++.+. ++|++-+|++.++++|+.+-+
T Consensus       174 G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~ii  246 (250)
T 1yya_A          174 GKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALL  246 (250)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHhChHHHHHHH
Confidence            44455555555444 3432         23689999999999999999988 999999999999877766544

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=95.75  E-value=0.021  Score=38.79  Aligned_cols=43  Identities=19%  Similarity=0.328  Sum_probs=37.7

Q ss_pred             CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHH
Q psy11601         28 PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      ..++|.-=|+++++|+.++. +.++|++-+|++.++++|+..-+
T Consensus       203 ~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii  246 (252)
T 2btm_A          203 EAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLV  246 (252)
T ss_dssp             TTSEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSSHHHHHHHH
T ss_pred             CceeEEEcCCCCHHHHHHHHcCCCCCeeEecHHHhChHHHHHHH
Confidence            46899999999999999999 89999999999999877666544

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=95.75  E-value=0.035  Score=38.92  Aligned_cols=57  Identities=16%  Similarity=0.225  Sum_probs=44.0

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .+.+...+.++   +.. ..|+.+-|+.+++.+.++++.| ||.|.+|+.+...+|+..+++
T Consensus       272 ~~~~~~a~~ik---~~~-~~~v~~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~  329 (358)
T 4a3u_A          272 TDQPKLSPEIR---KVF-KPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFF  329 (358)
T ss_dssp             CSSCCCHHHHH---HHC-CSCEEEESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             cccHHHHHHHH---Hhc-CCcEEEeCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHH
Confidence            33444444444   443 4678899999999999999999 899999999998899876664

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=95.72  E-value=0.027  Score=38.36  Aligned_cols=50  Identities=16%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      |+.--.+.++.|+++.+...++.|.+=|||+.+|++.+...|++-|=.++
T Consensus       150 ~~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~~tGv~e~H~Sa  199 (256)
T 1twd_A          150 QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSA  199 (256)
T ss_dssp             TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHHHcCCCeEeECC
Confidence            34445778888988876533788999999999999999999999988653

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A

Probab=95.67  E-value=0.011  Score=40.16  Aligned_cols=64  Identities=13%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             CCCCCcchHHHHHH-HHHh--------CCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN--------YPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~--------~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      |+.-.|+..+++.. +|+.        ...++|.-=|+++++|+.++.+. ++|++-+|++.++++|+..-++.
T Consensus       177 G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii~~  250 (256)
T 1aw2_A          177 GKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKA  250 (256)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHTTSTTCCEEEESGGGGCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeecHHHhChHHHHHHHHH
Confidence            45556666666544 4432        12478999999999999999988 99999999999988777665543

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=95.65  E-value=0.027  Score=41.41  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHhC------CCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCC------CCHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENY------PTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINC------PDRIQAISTLKSSVQ   78 (82)
Q Consensus        14 ~~~~~ki~~~~~~~------~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~------~d~~~~~~~l~~~~~   78 (82)
                      +..++-+.++++..      .++||.++|||.- ..+...+..|||.+.+|++++..      +...+.++.+++.++
T Consensus       382 ~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~~~~G~~gv~~~l~~l~~el~  459 (511)
T 1kbi_A          382 RAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIE  459 (511)
T ss_dssp             CCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            44556666655432      4699999999974 67888889999999999885431      123344455555544

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1

Probab=95.63  E-value=0.012  Score=42.07  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         27 YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        27 ~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ++++.|++.|||+++++.++.+. +|.|.+|+.+.+.
T Consensus       266 ~~~~~I~aSggl~~~~i~~l~~~-vD~~gvGt~l~~~  301 (395)
T 2i14_A          266 YDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASA  301 (395)
T ss_dssp             CCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTC
T ss_pred             CCceEEEEECCCCHHHHHHHHHh-CCEEEeCcccCCC
Confidence            35789999999999999999999 9999999987653

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...

Probab=95.55  E-value=0.033  Score=37.70  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             CCCCCcchHHHHHH-HHHh----C-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN----Y-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~----~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |+.-.|+..+++.. +|+.    +     ..++|.-=|+++++|+.++. +.++|++-+|++.++ +|+.+-++
T Consensus       175 G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii~  247 (250)
T 2j27_A          175 GKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK-PEFVDIIK  247 (250)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeeehHHHH-HHHHHHHH
Confidence            44455555555444 3332    2     24789999999999999999 899999999999998 88875543

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=95.53  E-value=0.034  Score=37.59  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=46.6

Q ss_pred             CCCCCcchHHHHHH-HHHh----C-----CCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN----Y-----PTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~----~-----~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |+.-.|+..+++.. +|+.    +     ..++|.-=|+++++|+.++.+ .++|++-+|++.++ +|+..-++
T Consensus       173 G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii~  245 (248)
T 1o5x_A          173 GKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIK  245 (248)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS-TTHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHHH-HHHHHHHH
Confidence            44555655555443 3332    2     248899999999999999998 99999999999998 88876553

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=95.50  E-value=0.022  Score=39.73  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcc-------cHHHHHH-cCCCEEEEeccccC--CCCHHHHHHHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPN-------TIDECAK-AGANWIVSGTAVIN--CPDRIQAISTLKSSVQ   78 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~-------ni~~~~~-~Gad~vv~gs~i~~--~~d~~~~~~~l~~~~~   78 (82)
                      ++++.+-. .+|+++.||=..+       .+...++ .|+.++++|+.||+  .+||...++.+...+.
T Consensus       229 f~~Vv~a~-~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH  296 (307)
T 3fok_A          229 MERVMEST-TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVH  296 (307)
T ss_dssp             HHHHGGGC-SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHhC-CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHH
Confidence            34444444 4899999997642       2445567 79999999999999  8999999999988763

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=95.50  E-value=0.018  Score=38.63  Aligned_cols=62  Identities=11%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             CCCCCcchHHHHHH-HHHhC-CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRENY-PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~~-~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      |+.-.|+..+++.. +|+.. ..++|.-=|+++++|+.++. +.++|++-+|++.++++|+.+-+
T Consensus       166 G~~At~e~a~ev~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~a~~f~~ii  230 (233)
T 2jgq_A          166 KKSASLEDIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENFKTII  230 (233)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhChHHHHHHH
Confidence            45556777777665 66654 57899999999999999865 67999999999999877665443

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A

Probab=95.46  E-value=0.085  Score=35.85  Aligned_cols=62  Identities=15%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             CCCCCcchHHHHHH-HHHh---------CCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN---------YPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~---------~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |..-.|+..+++.. +|+.         ...++|.-=|+++++|+.++.+. ++|++-+|++.++++ ..+-++
T Consensus       178 G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~-F~~Ii~  250 (257)
T 2yc6_A          178 GVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNNEKLGQCPNIDGFLVGGASLKPE-FMTMID  250 (257)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSTH-HHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHHHHHHHHcCCCCCeeeecHHHHHHH-HHHHHH
Confidence            44445555555443 3332         23689999999999999999988 999999999999876 654443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.27  E-value=0.011  Score=44.35  Aligned_cols=53  Identities=23%  Similarity=0.136  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +-++++++.. ++|+.+.|||+ ++.+.++++.| +|.|.+|++++..+|+...++
T Consensus       284 ~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~  338 (690)
T 3k30_A          284 EFVAGLKKLT-TKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIR  338 (690)
T ss_dssp             HHHTTSGGGC-SSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHc-CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHH
Confidence            4455566665 68999999996 89999999988 999999999998888876554

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A

Probab=95.23  E-value=0.023  Score=38.59  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CCCCCcchHHHHHH-HHHh--------CCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN--------YPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~--------~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      |+.-.|+..+++.. +|+.        ...++|.-=|+++++|+.++.+ .++|++-+|++.++++|+..-++.
T Consensus       175 G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii~~  248 (255)
T 1tre_A          175 GKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKA  248 (255)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHHHHHHHHcCCCCCeeEecHHHhChHHHHHHHHH
Confidence            44445555555444 3332        1257899999999999999998 999999999999988877766543

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=94.80  E-value=0.041  Score=38.57  Aligned_cols=44  Identities=25%  Similarity=0.349  Sum_probs=37.8

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +..++.|+++++..+++|+.+-+..+.+.+..+.++|||.|+++
T Consensus       146 ~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~  189 (351)
T 2c6q_A          146 EHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVG  189 (351)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence            45778899999987678888877889999999999999999775

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=94.79  E-value=0.056  Score=39.36  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC---CCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC---PDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~   78 (82)
                      .|..|+.|.-+.+..      . .+.|+...||++++|+.+..+.++.++=+.|.+=.+   .|+. .++++.+.++
T Consensus       382 ~GGtG~~fdW~~l~~------~-~~~p~iLAGGL~p~NV~~ai~~~p~gvDvsSGVE~~pG~KD~~-ki~~f~~~~r  450 (452)
T 1pii_A          382 QGGSGQRFDWSLLNG------Q-SLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDAR-LLASVFQTLR  450 (452)
T ss_dssp             SCCSSCCCCGGGGTT------S-CCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEETTEECHH-HHHHHHHHHH
T ss_pred             CCCCCCccCHHHhhc------c-cCCcEEEEcCCCHHHHHHHHhcCCCEEEeCCceeCCCCCCCHH-HHHHHHHHHh
Confidence            477888887765421      1 257899999999999988878999999999998532   3543 5566555544

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=94.72  E-value=0.04  Score=36.46  Aligned_cols=47  Identities=26%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCC--EEEEeccccC
Q psy11601         16 MMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGAN--WIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad--~vv~gs~i~~   62 (82)
                      .++.++.+++. ..+++|.+.|||+ .+.+.++.++|++  +..+|..|+.
T Consensus       162 t~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  212 (220)
T 1ub3_A          162 SLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA  212 (220)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred             CHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence            33444444442 3579999999999 4667888999999  4444455664

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1

Probab=94.69  E-value=0.018  Score=42.29  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCCCcccHHHHHHcCCCEEEEe--ccccC
Q psy11601         28 PTLNIEVDGGVGPNTIDECAKAGANWIVSG--TAVIN   62 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g--s~i~~   62 (82)
                      +++.|++.|||+++++.++.+.|++.++.|  +.|..
T Consensus       285 ~~~kI~aSggld~~~i~~l~~~G~~~~sfGvGT~Lt~  321 (494)
T 2f7f_A          285 TEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLIT  321 (494)
T ss_dssp             TTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHcCCCEEEEecCccccc
Confidence            468899999999999999999998766666  56654

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=94.61  E-value=0.19  Score=33.69  Aligned_cols=53  Identities=17%  Similarity=0.059  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccCCCCHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      ...+.++.+++.. ++|+..-++|..+ .+.++..+|||++.++...+. ++..+.
T Consensus        93 G~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l  146 (254)
T 1vc4_A           93 GSLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG-ELTGAY  146 (254)
T ss_dssp             CCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHH
T ss_pred             cCHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-HHHHHH
Confidence            3567788888775 6899887777666 899999999999999988776 544433

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=94.59  E-value=0.11  Score=34.09  Aligned_cols=43  Identities=19%  Similarity=0.367  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEec
Q psy11601         16 MMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        16 ~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs   58 (82)
                      .++-++++++. ..++||.+.|||+ .+.+.+++++|||.+-+++
T Consensus       161 ~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~  205 (225)
T 1mzh_A          161 TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSS  205 (225)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             CHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHcc
Confidence            45566666654 3469999999997 7888899999999654443

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=94.56  E-value=0.12  Score=35.62  Aligned_cols=59  Identities=15%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecc--ccC
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTA--VIN   62 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~--i~~   62 (82)
                      ..||....-.++.++-+++..+. .++++|-+.|||+- +.+..++++||+.+-..+.  |++
T Consensus       208 STGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~g~~I~~  270 (288)
T 3oa3_A          208 STGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASAGVKIVN  270 (288)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhhHHHHHH
Confidence            36776544455566666666543 35799999999984 7888999999996655543  553

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=94.32  E-value=0.081  Score=39.55  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=33.1

Q ss_pred             HHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         20 VKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..++.+.. .+||.+||||+- .++...+.+|||.+.+||.+-+
T Consensus       376 ~a~~a~~~-~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAG  418 (556)
T 4af0_A          376 VAEFASRF-GIPCIADGGIGNIGHIAKALALGASAVMMGGLLAG  418 (556)
T ss_dssp             HHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             HHHHHHHc-CCCEEecCCcCcchHHHHHhhcCCCEEEEchhhcc
Confidence            34444433 589999999975 5788888999999999998876

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=94.28  E-value=0.18  Score=33.52  Aligned_cols=47  Identities=15%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             CcchHHHHHHH-HHhCCCCcEEEEcCCC-cccHHHHHHc---CCC----EEEEecc
Q psy11601         13 MQDMMPKVKWL-RENYPTLNIEVDGGVG-PNTIDECAKA---GAN----WIVSGTA   59 (82)
Q Consensus        13 ~~~~~~ki~~~-~~~~~~~~i~~dGGI~-~~ni~~~~~~---Gad----~vv~gs~   59 (82)
                      .++..+-+++. +...++++|-+.|||+ .+.+..+.++   |++    .+-..|.
T Consensus       167 t~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~~  222 (226)
T 1vcv_A          167 TPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTSTP  222 (226)
T ss_dssp             CHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESCG
T ss_pred             CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCch
Confidence            33344555553 2235679999999999 7888899999   999    7755543

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=94.17  E-value=0.083  Score=34.50  Aligned_cols=43  Identities=21%  Similarity=0.143  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-------ccHHHHHHcCCCEEEEecc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-------NTIDECAKAGANWIVSGTA   59 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-------~ni~~~~~~Gad~vv~gs~   59 (82)
                      .++-++++++.. ++|+.+-+++++       +.++.+.++|||+++++..
T Consensus        68 ~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~  117 (248)
T 1geq_A           68 AFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDL  117 (248)
T ss_dssp             HHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTC
T ss_pred             HHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCC
Confidence            466777888764 578888887785       7889999999999999854

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=94.09  E-value=0.42  Score=30.40  Aligned_cols=61  Identities=18%  Similarity=0.109  Sum_probs=45.3

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCc--ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~--~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.+..++.++++++.. +.++.+++.++.  +.++.+.++|+|++.+...-.  +.+.+.++.+++
T Consensus        45 ~~~~g~~~i~~i~~~~-~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~--~~~~~~~~~~~~  107 (220)
T 2fli_A           45 NISFGADVVASMRKHS-KLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST--RHIHGALQKIKA  107 (220)
T ss_dssp             CBCBCHHHHHHHHTTC-CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGC--SCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhC-CCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCcc--ccHHHHHHHHHH
Confidence            3345577888888775 578999999885  368999999999999986543  566666666553

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=94.05  E-value=0.096  Score=37.79  Aligned_cols=46  Identities=20%  Similarity=0.411  Sum_probs=39.8

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .+..++.|+++++..+++|+.+-++.+.+.+..+.++|+|.++++.
T Consensus       262 ~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~  307 (494)
T 1vrd_A          262 SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGV  307 (494)
T ss_dssp             SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred             hHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcC
Confidence            3457888999998876789988889999999999999999999853

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=94.00  E-value=0.079  Score=35.92  Aligned_cols=61  Identities=21%  Similarity=0.304  Sum_probs=44.1

Q ss_pred             CCCCCcchHHH----HHH-HHHhC-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHH
Q psy11601          9 GQKFMQDMMPK----VKW-LRENY-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus         9 gq~~~~~~~~k----i~~-~~~~~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      |..-.|+..+.    ||+ +.+.+     .+++|.-=|+++++|+.++. +.++|++-+|++-+++++..+-
T Consensus       178 G~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~~~~F~~I  249 (254)
T 3m9y_A          178 GKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQL  249 (254)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCCCTTTHHHHHTSTTCCEEEESGGGSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHHcCCCCCeEEeeHHhhCHHHHHHH
Confidence            44455555555    444 22222     36899999999999999998 8999999999998876655443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=93.86  E-value=0.11  Score=38.03  Aligned_cols=46  Identities=17%  Similarity=0.272  Sum_probs=39.0

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+..++.++++++..|++|+.+-...+.+.+..+.++|||.++++
T Consensus       255 ~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg  300 (496)
T 4fxs_A          255 HSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG  300 (496)
T ss_dssp             TSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             cchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEEC
Confidence            3456778889999888788888866789999999999999999986

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=93.82  E-value=0.073  Score=34.74  Aligned_cols=43  Identities=9%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             HHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecc-ccCC
Q psy11601         20 VKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTA-VINC   63 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~-i~~~   63 (82)
                      |+++++.. ++|+.+-|+|+ .+.+.+.+++||+.++.+.. +|+.
T Consensus       142 I~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~  186 (192)
T 3kts_A          142 VQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG  186 (192)
T ss_dssp             HHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred             HHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence            45555554 68999999996 57788999999999999954 8864

>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1

Probab=93.59  E-value=0.024  Score=38.55  Aligned_cols=42  Identities=12%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             CCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCC--CHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCP--DRIQAI   70 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~--d~~~~~   70 (82)
                      .++|.-=|+++++|+.++. +.++|++-+|++.++++  |+..-+
T Consensus       206 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASLka~~~~F~~ii  250 (255)
T 1b9b_A          206 SIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELARIM  250 (255)
T ss_dssp             HSEEEEESSCCHHHHTTTSSSTTCCEEEESGGGTSTHHHHHHHHH
T ss_pred             cceEEEcCcCCHHHHHHHHcCCCCCeeEeehHhhcCccccHHHHH
Confidence            4789999999999999998 89999999999999887  766544

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=93.57  E-value=0.065  Score=39.06  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ++|+.++|||. ...+...+++||+.+.+|+.+..
T Consensus       352 ~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~  386 (503)
T 1me8_A          352 YIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFAR  386 (503)
T ss_dssp             ECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence            58999999997 66788888999999999999854

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=93.46  E-value=0.14  Score=37.30  Aligned_cols=46  Identities=17%  Similarity=0.445  Sum_probs=38.6

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+..++.++++++..|++|+.+-...+.+.+..+.++|||.+++|
T Consensus       253 ~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg  298 (490)
T 4avf_A          253 HSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVG  298 (490)
T ss_dssp             SBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             cchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEEC
Confidence            4556778899999887778887755789999999999999999985

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=93.40  E-value=0.13  Score=37.27  Aligned_cols=46  Identities=24%  Similarity=0.360  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+..++++.+.. ++||.++|||. ...+...+.+|||.+.+|+.+..
T Consensus       316 ~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~  362 (486)
T 2cu0_A          316 AVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG  362 (486)
T ss_dssp             HHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             HHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence            444555554443 58999999986 45677777899999999999765

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=93.38  E-value=0.19  Score=31.93  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCC--ccc-HHHHHHcCCCEEEEecc
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVG--PNT-IDECAKAGANWIVSGTA   59 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~--~~n-i~~~~~~Gad~vv~gs~   59 (82)
                      .+..++-++++|+..+++|+.++=-+.  .+. ++.+.++|+|.+++...
T Consensus        37 ~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~   86 (211)
T 3f4w_A           37 IREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV   86 (211)
T ss_dssp             HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred             HhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence            455677788888876678887654443  244 88999999999999754

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=93.36  E-value=0.056  Score=38.85  Aligned_cols=51  Identities=8%  Similarity=0.019  Sum_probs=38.0

Q ss_pred             HHHHHHhCCCCcEEEEcCCCccc-HHHHHH----cCCCEEEEeccccCCCCHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNT-IDECAK----AGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~n-i~~~~~----~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ++.+++.. +.|+.+.|||+... ..+++.    .++|.|.+|++++..+|+...++
T Consensus       305 ~~~ir~~~-~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri~  360 (407)
T 3tjl_A          305 NEFVSKIW-KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLR  360 (407)
T ss_dssp             SHHHHHHC-CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHHH
T ss_pred             HHHHHHHh-CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHHH
Confidence            34455554 47999999999766 555444    46999999999988889876654

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=93.30  E-value=0.066  Score=38.03  Aligned_cols=48  Identities=17%  Similarity=0.183  Sum_probs=36.9

Q ss_pred             HHhCCCCcEEEEcCCCc--ccHHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601         24 RENYPTLNIEVDGGVGP--NTIDECAKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        24 ~~~~~~~~i~~dGGI~~--~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      ++.. +.|+.+.||++.  +-...+.+-++|.|.+|+.+...+|+.+++++
T Consensus       314 r~~~-~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~~  363 (400)
T 4gbu_A          314 YSIW-KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEK  363 (400)
T ss_dssp             HHHC-CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHH
T ss_pred             HHHh-CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHHHc
Confidence            4443 579999999963  44556777789999999999988898776653

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=93.27  E-value=0.14  Score=36.16  Aligned_cols=45  Identities=18%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .+..++.|+++++..|++++.+-...+.+.+..+.++|||.+++|
T Consensus       133 ~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          133 SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEe
Confidence            355677889999887777776644678999999999999999994

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=93.22  E-value=0.15  Score=34.52  Aligned_cols=46  Identities=20%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .++.|+++++.. ++|+. -|..|+...+.+...+|||+|.++.+...
T Consensus       101 s~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~  147 (272)
T 3qja_A          101 SLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE  147 (272)
T ss_dssp             HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC
T ss_pred             CHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEecccCC
Confidence            567788888765 46654 45667777899999999999999977664

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=92.94  E-value=0.51  Score=31.08  Aligned_cols=60  Identities=13%  Similarity=0.083  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHhCCCCcEEE-----EcC----C--CcccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEV-----DGG----V--GPNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKS   75 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~-----dGG----I--~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~   75 (82)
                      ...+.|+++++.. ++|+..     .||    |  +.+.+.++.++|||.+++++.... ++.+.+.++.+++
T Consensus        56 ~~~~~i~~ir~~v-~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~  127 (232)
T 3igs_A           56 EGIDNLRMTRSLV-SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHH  127 (232)
T ss_dssp             ESHHHHHHHHTTC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHH
Confidence            4577888888876 578642     144    2  234789999999999999987653 4556666666554

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=92.81  E-value=0.17  Score=34.93  Aligned_cols=45  Identities=18%  Similarity=0.354  Sum_probs=35.0

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..+..++.|+++++..+..++ +.| ..+.+.+..+.++|||.++++
T Consensus       132 ~~~~~~~~i~~lr~~~~~~~v-i~G~v~s~e~A~~a~~aGad~Ivvs  177 (336)
T 1ypf_A          132 HSNAVINMIQHIKKHLPESFV-IAGNVGTPEAVRELENAGADATKVG  177 (336)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             CcHHHHHHHHHHHHhCCCCEE-EECCcCCHHHHHHHHHcCCCEEEEe
Confidence            344567788889888654444 456 678999999999999999994

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=92.77  E-value=0.39  Score=32.69  Aligned_cols=47  Identities=19%  Similarity=0.091  Sum_probs=36.9

Q ss_pred             chHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         15 DMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..++.|+++++.. ++||.. |+-+++..+.+...+|||.+.++.+.+.
T Consensus       107 Gs~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~  154 (272)
T 3tsm_A          107 GAPEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADCILIIMASVD  154 (272)
T ss_dssp             CCHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSC
T ss_pred             CCHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCEEEEcccccC
Confidence            4667788888765 577654 4457888999999999999999988763

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=92.64  E-value=0.1  Score=45.49  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=40.7

Q ss_pred             CCCCCcchHHHH----HHHHHhCCCCcEEEEcCC-CcccHHHHH-----------HcCCCEEEEeccccCC
Q psy11601          9 GQKFMQDMMPKV----KWLRENYPTLNIEVDGGV-GPNTIDECA-----------KAGANWIVSGTAVINC   63 (82)
Q Consensus         9 gq~~~~~~~~ki----~~~~~~~~~~~i~~dGGI-~~~ni~~~~-----------~~Gad~vv~gs~i~~~   63 (82)
                      |+........-+    .++++.. ++||.+.||| +.+.+..++           ..|||++.+||.+...
T Consensus       583 GH~g~~~~~~ll~~~~~~ir~~~-~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t  652 (3089)
T 3zen_D          583 GHHSWEDLDDLLLATYSELRSRS-NITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMAT  652 (3089)
T ss_dssp             EECCSCCHHHHHHHHHHHHTTCT-TEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred             CCCCcccHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhC
Confidence            444444455555    5555543 6999999998 778899899           9999999999997753

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=92.54  E-value=0.34  Score=32.31  Aligned_cols=44  Identities=16%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             chHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEec
Q psy11601         15 DMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGT   58 (82)
Q Consensus        15 ~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs   58 (82)
                      ..++.++.+++. .++++|-+.|||+- +.+..++++||+.+-+.+
T Consensus       175 At~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~  220 (231)
T 3ndo_A          175 ASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRLGLSG  220 (231)
T ss_dssp             CCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred             CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhcccch
Confidence            345566666554 35799999999984 788899999999765544

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=92.53  E-value=0.42  Score=32.46  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=36.4

Q ss_pred             CCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecc
Q psy11601          5 PGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTA   59 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~   59 (82)
                      .||....   ..++.++-+++. .++++|-+.|||+- +.+..++++||+.+-+.+.
T Consensus       194 TGf~~~G---AT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~g  247 (260)
T 3r12_A          194 TGFGTGG---ATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSG  247 (260)
T ss_dssp             CSSSSCC---CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             CCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeecchH
Confidence            5665333   345555555553 35799999999984 7888999999997655543

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=92.52  E-value=0.14  Score=34.16  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=33.2

Q ss_pred             chHHHHHH--HHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEE--EEecccc
Q psy11601         15 DMMPKVKW--LRENYPTLNIEVDGGVG-PNTIDECAKAGANWI--VSGTAVI   61 (82)
Q Consensus        15 ~~~~ki~~--~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~v--v~gs~i~   61 (82)
                      ..++.++.  +++... ++|.+.|||+ .+.+..+.++|++.|  .+|..||
T Consensus       177 At~~dv~l~~m~~~v~-v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~  227 (234)
T 1n7k_A          177 DPVTVFRLASLAKPLG-MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVL  227 (234)
T ss_dssp             SHHHHHHHHHHHGGGT-CEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred             CCHHHHHHHHHHHHHC-CCEEEecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence            34555555  676655 8999999999 667888999999944  3334455

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=92.46  E-value=0.23  Score=35.00  Aligned_cols=44  Identities=18%  Similarity=0.345  Sum_probs=36.7

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +..++.|+++++..+++|+.+-+..+.+.+..+.++|+|.|++|
T Consensus       179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg  222 (404)
T 1eep_A          179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEEC
Confidence            45677788888886678888867788999999999999999994

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=92.42  E-value=0.21  Score=37.35  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=40.5

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .....++.++++++.+|+++|.+=.=.+.+-...|..+|||.+-+|
T Consensus       305 hs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVG  350 (556)
T 4af0_A          305 NSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIG  350 (556)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             ccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeec
Confidence            4567888999999998888888888889999999999999999877

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=91.53  E-value=0.28  Score=32.95  Aligned_cols=52  Identities=19%  Similarity=0.330  Sum_probs=35.2

Q ss_pred             CCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecc
Q psy11601          5 PGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTA   59 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~   59 (82)
                      .||....   ..++.++.+++. .++++|-+.|||+- +.+..++++||+.+-+.+.
T Consensus       178 TGf~~gg---At~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~riGtS~~  231 (239)
T 3ngj_A          178 TGFGTHG---ATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRIGASAG  231 (239)
T ss_dssp             CSSSSCC---CCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEEEESCH
T ss_pred             CCCCCCC---CCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccceecccH
Confidence            5665332   344455554443 34689999999984 7888999999997655543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=91.45  E-value=0.35  Score=35.39  Aligned_cols=46  Identities=33%  Similarity=0.436  Sum_probs=38.0

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .....++.|+++++..++.++.+-+-.+.+.+..+.++|||.+++|
T Consensus       280 ~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg  325 (511)
T 3usb_A          280 HSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG  325 (511)
T ss_dssp             TSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             chhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEEC
Confidence            3456778899999988778888766668899999999999999985

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=91.31  E-value=0.31  Score=34.19  Aligned_cols=42  Identities=17%  Similarity=0.086  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      ..+.|+++++.. ++|+.+=|..+.+.+..+.++|||.|++|+
T Consensus       199 ~~~~i~~l~~~~-~~pvi~ggi~t~e~a~~~~~~Gad~i~vg~  240 (393)
T 2qr6_A          199 EALNLKEFIGSL-DVPVIAGGVNDYTTALHMMRTGAVGIIVGG  240 (393)
T ss_dssp             ---CHHHHHHHC-SSCEEEECCCSHHHHHHHHTTTCSEEEESC
T ss_pred             cHHHHHHHHHhc-CCCEEECCcCCHHHHHHHHHcCCCEEEECC
Confidence            455677777775 689998777899999999999999999976

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=91.14  E-value=1.5  Score=30.81  Aligned_cols=63  Identities=17%  Similarity=0.215  Sum_probs=46.1

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec----cccCCCCHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT----AVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs----~i~~~~d~~~~~~~l~~~~   77 (82)
                      +..++.|+++++.. +.|+.+=|-.+.+.+..+.++|+|.|++..    .+.......+.+.++++.+
T Consensus       215 ~~~~~~i~~lr~~~-~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v  281 (368)
T 2nli_A          215 KISPRDIEEIAGHS-GLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERV  281 (368)
T ss_dssp             BCCHHHHHHHHHHS-SSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHc-CCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh
Confidence            44677788888876 588988888999999999999999999953    2332333445666666544

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}

Probab=91.12  E-value=0.18  Score=34.23  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=45.7

Q ss_pred             CCCCCcchHHHHHH-HHH----hC-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----NY-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |+.-.|+..+++.. +|+    .+     ..++|.-=|+++++|+.++. +.++|++-+|++.++++|+..-++
T Consensus       172 G~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii~  245 (259)
T 2i9e_A          172 GKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGGASLKPEFVDIINA  245 (259)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSTHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHhhHHHHhcCCCCCeeeechHhhChHHHHHHHH
Confidence            44555555555444 332    22     24789999999999999876 579999999999998887765543

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=91.09  E-value=1.3  Score=25.38  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             chHHHHHHHHH--hCCCCcEEEE-cCCCcccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRE--NYPTLNIEVD-GGVGPNTIDECAKAGANWIVSGTAVINCP-DRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~--~~~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++  ..+++|+.+. +.-+.+.+..+.++|++.++.     ++- ++.+-...+++.++.
T Consensus        65 ~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~-----Kp~~~~~~l~~~i~~~l~~  128 (144)
T 3kht_A           65 NGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVD-----KSSNNVTDFYGRIYAIFSY  128 (144)
T ss_dssp             CHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEE-----CCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEE-----CCCCcHHHHHHHHHHHHHH
Confidence            46677888887  4566776555 446777888999999998743     444 555555555555543

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=90.95  E-value=1.4  Score=27.94  Aligned_cols=60  Identities=13%  Similarity=0.178  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHhCCCCcEEE-------EcCC----CcccHHHHHHcCCCEEEEeccccCCC--CHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEV-------DGGV----GPNTIDECAKAGANWIVSGTAVINCP--DRIQAISTLKSS   76 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~-------dGGI----~~~ni~~~~~~Gad~vv~gs~i~~~~--d~~~~~~~l~~~   76 (82)
                      ..+.|+++++.. ++|+..       ++++    +.+.+..+.++|+|.+.+++.....+  .+.+.++.+++.
T Consensus        44 ~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~  116 (223)
T 1y0e_A           44 TKEDILAIKETV-DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH  116 (223)
T ss_dssp             SHHHHHHHHHHC-CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc-CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHh
Confidence            345567777765 577742       2333    34678899999999999997765432  556666666654

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=90.93  E-value=0.28  Score=34.66  Aligned_cols=43  Identities=14%  Similarity=0.142  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEE---cCCCcccHHHHHHcCCCEEEEec
Q psy11601         15 DMMPKVKWLRENYPTLNIEVD---GGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~d---GGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      ..++.|+++++.. ++||.+-   +|++++.+..+.++|||.|+++.
T Consensus       174 ~~~~~i~~i~~~~-~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g  219 (368)
T 3vkj_A          174 YALEKLRDISKEL-SVPIIVKESGNGISMETAKLLYSYGIKNFDTSG  219 (368)
T ss_dssp             HHHHHHHHHHTTC-SSCEEEECSSSCCCHHHHHHHHHTTCCEEECCC
T ss_pred             HHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeC
Confidence            3688888888875 6898884   46899999999999999999854

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=90.74  E-value=0.99  Score=29.65  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHhCCCCcEE----EE-cC----CC--cccHHHHHHcCCCEEEEecccc-CCCCHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIE----VD-GG----VG--PNTIDECAKAGANWIVSGTAVI-NCPDRIQAISTLKS   75 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~----~d-GG----I~--~~ni~~~~~~Gad~vv~gs~i~-~~~d~~~~~~~l~~   75 (82)
                      ...+.|+++++.. ++|+.    -+ ||    |+  .+.+.++.++|||.+++++... .++.+.+.++.+++
T Consensus        56 ~~~~~i~~ir~~v-~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~  127 (229)
T 3q58_A           56 EGIENLRTVRPHL-SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRL  127 (229)
T ss_dssp             ESHHHHHHHGGGC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHH
Confidence            4577888888876 57764    22 22    23  3478999999999999997764 45566666666654

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=90.70  E-value=0.29  Score=41.49  Aligned_cols=48  Identities=10%  Similarity=0.144  Sum_probs=39.9

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHH-----------HcCCCEEEEeccccC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECA-----------KAGANWIVSGTAVIN   62 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~-----------~~Gad~vv~gs~i~~   62 (82)
                      ...+.-+.++++.. ++|+.++|||. .+.+..++           .+|||++.+||.+..
T Consensus       741 ~~~l~lv~~i~~~~-~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~  800 (2060)
T 2uva_G          741 QPILLMYSRIRKCS-NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMT  800 (2060)
T ss_dssp             HHHHHHHHHHHTST-TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGG
T ss_pred             chHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhc
Confidence            44677788888875 69999999996 56788888           899999999999765

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=90.70  E-value=0.3  Score=34.50  Aligned_cols=44  Identities=23%  Similarity=0.132  Sum_probs=34.8

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +..++.|+++++..++++|.+=+-.+.+.+..+.++|||.+++|
T Consensus       126 ~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg  169 (361)
T 3r2g_A          126 KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAG  169 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence            44567788888876667777633568999999999999999985

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=90.60  E-value=0.99  Score=32.00  Aligned_cols=62  Identities=24%  Similarity=0.347  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc----ccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA----VINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~----i~~~~d~~~~~~~l~~~~   77 (82)
                      ..++.|+++++.. +.|+.+=|-.+.+.+..+.++|+|.|+++..    ........+.+.++++.+
T Consensus       239 ~~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av  304 (392)
T 2nzl_A          239 ISWEDIKWLRRLT-SLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAV  304 (392)
T ss_dssp             CCHHHHHHHC--C-CSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-CCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc
Confidence            3677788888765 5888887778999999999999999999422    222333445555555544

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=90.52  E-value=0.56  Score=31.21  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=35.0

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .|..++-|+++++..+.+.+-+-.=++.+.++.+.++||+++++..
T Consensus        69 t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~  114 (232)
T 4e38_A           69 SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG  114 (232)
T ss_dssp             STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS
T ss_pred             CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC
Confidence            3577888999998776654444334578889999999999998764

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=90.47  E-value=1  Score=26.49  Aligned_cols=57  Identities=14%  Similarity=0.168  Sum_probs=38.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++-++++++..+++|+.+..+ -+.+.+..+.++|++.++     .++-++.+-...+++.
T Consensus        97 ~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~  154 (157)
T 3hzh_A           97 DGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFI-----VKPLDRAKVLQRVMSV  154 (157)
T ss_dssp             CHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHH
Confidence            46777888888777777665554 567778899999999774     3444555444444443

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1

Probab=90.42  E-value=0.73  Score=31.54  Aligned_cols=63  Identities=16%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             CCCCCcchHHHHHH-HHH----hC-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----NY-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |+.-.|+..+++.. +|+    .+     ..++|.-=|+++++|+.++. +.++|++-+|++.++++|+.+-++
T Consensus       192 GktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgASLka~~F~~Ii~  265 (275)
T 1mo0_A          192 GKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINA  265 (275)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGGSTHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCHhhHHHHhcCCCCCeeEechHHhChHHHHHHHH
Confidence            44455555555444 332    22     24789999999999998776 579999999999998887765554

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=90.30  E-value=1.5  Score=30.82  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec----cccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT----AVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs----~i~~~~d~~~~~~~l~~~~   77 (82)
                      -..+.|+++++.. +.|+.+=|-.+.+.+..+.++|+|.|++..    .+...+...+.+.++.+.+
T Consensus       204 ~~w~~i~~lr~~~-~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av  269 (352)
T 3sgz_A          204 FCWNDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAV  269 (352)
T ss_dssp             CCHHHHHHHHHHC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHh
Confidence            4567788888875 689988888999999999999999999842    2333333445555555443

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=90.12  E-value=0.76  Score=31.39  Aligned_cols=60  Identities=23%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             CCCCCcchHHHHHH-HHHh----C-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN----Y-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~----~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      |..-.|+..+.+.. +|+.    +     +.++|.-=|+++++|+.++. +.++|++-+|++-.+ ++..+-
T Consensus       196 G~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgASL~-~~F~~I  266 (271)
T 3krs_A          196 GVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLK-PTFAKI  266 (271)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTHHHHHHSTTCCEEEESGGGGS-TTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHhcCCCCCEEEeeHHhhh-HHHHHH
Confidence            55555655555433 3332    2     24789999999999999876 578999999999887 465443

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=90.02  E-value=0.72  Score=32.28  Aligned_cols=52  Identities=10%  Similarity=-0.040  Sum_probs=41.8

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEe
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSG   57 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~g   57 (82)
                      .+--|++.++.++.++++++..+++||++|+.++.+.+.++++.| +|.+.+.
T Consensus       221 ~~iEqP~~~~~~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik  273 (389)
T 2oz8_A          221 LWVEDPILRHDHDGLRTLRHAVTWTQINSGEYLDLQGKRLLLEAHAADILNVH  273 (389)
T ss_dssp             SEEESCBCTTCHHHHHHHHHHCCSSEEEECTTCCHHHHHHHHHTTCCSEEEEC
T ss_pred             eEEeCCCCCcCHHHHHHHHhhCCCCCEEeCCCCCHHHHHHHHHcCCCCEEEEC
Confidence            344577878888889998887525999999999888888888877 7888776

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=90.00  E-value=0.64  Score=32.65  Aligned_cols=61  Identities=20%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +..+.++++++. ...|+.+-.|++ .+.+..+.++|+|.+++.++--.++...+.++++++.
T Consensus        82 ~~~~~I~~vk~~-~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~  143 (361)
T 3khj_A           82 SQVNEVLKVKNS-GGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK  143 (361)
T ss_dssp             HHHHHHHHHHHT-TCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-cCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHh
Confidence            344556666665 357788888877 6788899999999998865432122233445555443

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=89.87  E-value=1.6  Score=24.51  Aligned_cols=43  Identities=26%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             chHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEEEe
Q psy11601         15 DMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +.++-++++++..++.|+.+ .+.-+.+......+.|++.++.-
T Consensus        60 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~k  103 (134)
T 3f6c_A           60 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK  103 (134)
T ss_dssp             CHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEG
T ss_pred             ChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeC
Confidence            46777888888777777555 45566678889999999987553

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=89.86  E-value=2  Score=31.53  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec----cccCCCCHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT----AVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs----~i~~~~d~~~~~~~l~~~~   77 (82)
                      .++.|+++++.. ++||.+=|..+.+.+..+.++|+|.|+++.    .+......-+.+.++.+.+
T Consensus       331 ~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v  395 (511)
T 1kbi_A          331 TWKDIEELKKKT-KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPIL  395 (511)
T ss_dssp             CHHHHHHHHHHC-SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHH
Confidence            477788888876 689998887789999999999999999942    2322333344555555554

>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}

Probab=89.84  E-value=0.19  Score=35.08  Aligned_cols=48  Identities=13%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             CCCcEEEEcCCCcccHHH--HHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         28 PTLNIEVDGGVGPNTIDE--CAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~--~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      ..++|.-=|+++++|+.+  + ..++|++-+|++-.++++..+-++++.+.
T Consensus       259 ~~vrILYGGSV~~~n~~~~~l-~~dVDG~LVGgASL~a~~F~~Ii~e~~~~  308 (310)
T 3s6d_A          259 GEVRILYGGSAGPGLWGPGGL-GKEVDGMFLGRFAHDIEGVRKVVREVEES  308 (310)
T ss_dssp             SCEEEEEEEEECTTTTTTTSG-GGTCSEEEECGGGGSHHHHHHHHHHHHHH
T ss_pred             CceeEEEcCccCHHHHhhhcc-cCCCCEEEeeheeecHHHHHHHHHHHHHH
Confidence            358899999999999998  6 58999999999999888888777776654

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=89.73  E-value=1.6  Score=25.12  Aligned_cols=59  Identities=14%  Similarity=0.076  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+..+ -+.+.+....++|++.+     |.++-++.+-...++..++
T Consensus        81 ~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~-----l~Kp~~~~~L~~~i~~~~~  140 (146)
T 4dad_A           81 AELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDV-----LRWPLEPRALDDALKRAAA  140 (146)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCcee-----EcCCCCHHHHHHHHHHHHh
Confidence            45677788888777788666555 55677788899998876     3445566665566665554

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=89.64  E-value=1.7  Score=30.01  Aligned_cols=44  Identities=11%  Similarity=0.090  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHHhCCCCcEEEE---cCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVD---GGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~d---GGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +..++.++++++..++.++.+-   |--+.+.++...++|+|.+.+-
T Consensus        67 ~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~  113 (345)
T 1nvm_A           67 HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVA  113 (345)
T ss_dssp             SCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEEE
Confidence            5678888888887678888888   5446889999999999998775

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=89.41  E-value=2  Score=28.91  Aligned_cols=62  Identities=24%  Similarity=0.309  Sum_probs=45.1

Q ss_pred             CCCCCcchHHHHHH-HHH----hC-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----NY-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |+.-.|+..+++.. +|+    .+     ..++|.-=|+++++|+.++. +.++|++-+|++.++ +|+..-++
T Consensus       176 G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~Ii~  248 (251)
T 2vxn_A          176 GKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK-PEFRDIID  248 (251)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHhcCCCCCeeeecHHHHH-HHHHHHHH
Confidence            44445555555444 332    22     24789999999999998776 579999999999998 88875543

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=89.27  E-value=0.82  Score=30.00  Aligned_cols=45  Identities=18%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      +...+.|+++++..+++.+-+.-=++.+.++...++|||+++++.
T Consensus        53 ~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~   97 (224)
T 1vhc_A           53 EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG   97 (224)
T ss_dssp             TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS
T ss_pred             chHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECC
Confidence            456778888888876654444332378999999999999998774

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=89.04  E-value=0.8  Score=30.96  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             CCCCCcchHHHHHH-HHHh---------CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN---------YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~---------~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      |..-.|+..+.+.. +|+.         .+.++|.-=|+++++|+.++. +.++|++-+|++-.+ ++..+-
T Consensus       177 G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~-~~F~~I  247 (255)
T 3qst_A          177 GKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAACPDVDGFLVGGASLE-AGFINI  247 (255)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHHHHHSTTCCEEEECGGGGS-TTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHHHhcCCCCCEEEeeHHHhh-HHHHHH
Confidence            45555555555443 3332         135899999999999998776 578999999999887 465443

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=88.96  E-value=0.95  Score=31.72  Aligned_cols=45  Identities=22%  Similarity=0.212  Sum_probs=32.9

Q ss_pred             HHHHHHHHhCCCCcEE-EEcCCCccc----HHHHHHcCC--CEEEEeccccCC
Q psy11601         18 PKVKWLRENYPTLNIE-VDGGVGPNT----IDECAKAGA--NWIVSGTAVINC   63 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~-~dGGI~~~n----i~~~~~~Ga--d~vv~gs~i~~~   63 (82)
                      +.++++.... ++|++ ..||.+.+.    +....++|+  .+|.+|+.+|+.
T Consensus       235 ~~f~~~~~a~-~~P~v~lsgG~~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq~  286 (332)
T 3iv3_A          235 QAFREQEAST-DLPYIYLSAGVSAELFQETLVFAHKAGAKFNGVLCGRATWAG  286 (332)
T ss_dssp             HHHHHHHHTC-SSCEEEECTTCCHHHHHHHHHHHHHHTCCCCEEEECHHHHTT
T ss_pred             HHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCCCcceEEeeHHHHHh
Confidence            3455555544 58855 699998654    455678999  999999999974

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=88.84  E-value=2.1  Score=24.38  Aligned_cols=58  Identities=10%  Similarity=0.058  Sum_probs=38.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+++|+.+..+ -+.+....+.++|++.++.     ++-++.+-...+++.+
T Consensus        63 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~l~~~~  121 (143)
T 3jte_A           63 SGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLR-----KPVTAQDLSIAINNAI  121 (143)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEE-----SSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEe-----CCCCHHHHHHHHHHHH
Confidence            46777888888777777665544 5566788899999998744     3445554444444443

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=88.81  E-value=0.81  Score=32.29  Aligned_cols=42  Identities=10%  Similarity=0.047  Sum_probs=34.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC---CCcccHHHHHHcCCCEEEEe
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG---VGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG---I~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..++.|+++++.. ++||.+-|=   .+.+.+..+.++|||.|+++
T Consensus       193 ~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~  237 (365)
T 3sr7_A          193 SWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTAIDLGVKTVDIS  237 (365)
T ss_dssp             HHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence            3457888888875 688888853   68999999999999999985

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=88.51  E-value=0.82  Score=31.46  Aligned_cols=41  Identities=15%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEE---cCCCcccHHHHHHcCCCEEEEe
Q psy11601         16 MMPKVKWLRENYPTLNIEVD---GGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~d---GGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .++.++++++.. ++||.+-   .+++.+.+..+.++|||.+++.
T Consensus       166 ~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~  209 (349)
T 1p0k_A          166 ALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIG  209 (349)
T ss_dssp             HHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence            567788888765 5788874   4489999999999999999995

>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A

Probab=88.38  E-value=0.38  Score=32.86  Aligned_cols=51  Identities=18%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCCcccHHH----HHHcCCCEEEEe--ccccCC---CCHHHHHHHHHHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDE----CAKAGANWIVSG--TAVINC---PDRIQAISTLKSSVQK   79 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~----~~~~Gad~vv~g--s~i~~~---~d~~~~~~~l~~~~~~   79 (82)
                      .+-++-.|||+.+|+.+    ++++|+..|+=-  |+|...   ..--+.+++|.+.+++
T Consensus       210 g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~  269 (275)
T 3m6y_A          210 GFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKK  269 (275)
T ss_dssp             TCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred             CceECCCCCccHhHHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999976    467899887632  555531   1122344444444444

>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}

Probab=88.36  E-value=3.7  Score=26.65  Aligned_cols=71  Identities=10%  Similarity=-0.091  Sum_probs=47.7

Q ss_pred             CCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEe-ccccCCCCHHHHHHHHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSG-TAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g-s~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +..+.+..++-|...+++    ..++..++.|.-..+.++++...|||-++.. ..-|..-++......|.+.+++
T Consensus        14 ~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~   89 (217)
T 3ih5_A           14 EGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKE   89 (217)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHH
T ss_pred             CCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            344566677777666554    3356677778644567889999999988776 4567666666666666665554

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=88.34  E-value=2.4  Score=24.49  Aligned_cols=59  Identities=10%  Similarity=0.076  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+..+ -+.+.+..+.++|++.++.     ++-++.+-...+++.++
T Consensus        75 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~~i~~~~~  134 (152)
T 3eul_A           75 DGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLL-----KDSTRTEIVKAVLDCAK  134 (152)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEe-----cCCCHHHHHHHHHHHHc
Confidence            46777888888777777666554 5566677899999998754     44455555555555443

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...

Probab=88.33  E-value=0.95  Score=30.47  Aligned_cols=60  Identities=22%  Similarity=0.150  Sum_probs=43.6

Q ss_pred             CCCCCcchHHHHHH-HHH----hC-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----NY-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~   68 (82)
                      |+.-.|+..+++.. +|+    .+     ..++|.-=|+++++|+.++. +.++|++-+|++.++++|+.+
T Consensus       173 G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~  243 (248)
T 1r2r_A          173 GKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDI  243 (248)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHHcCCCCCeeEechHHhChHHHHH
Confidence            44455555555444 332    22     24789999999999998776 579999999999998877654

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=88.25  E-value=2.5  Score=24.46  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             cchHHHHHHHHHhCCCCcEEEE-cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .+.++-++++++..+++|+.+. +.-+.+....+.++|++.++.     ++-++.+-...+++.++
T Consensus        79 ~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~~i~~~~~  139 (150)
T 4e7p_A           79 KTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVL-----KERSIADLMQTLHTVLE  139 (150)
T ss_dssp             SCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE-----TTSCHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEe-----cCCCHHHHHHHHHHHHc
Confidence            3567778888887777776555 445667888999999987754     44466666666665543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=87.98  E-value=0.97  Score=32.76  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=34.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ..++.++++++..|++|+.+-+=.+.+.+..+.++|||.+++|
T Consensus       282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg  324 (514)
T 1jcn_A          282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVG  324 (514)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEEC
Confidence            4567788888877678887644578889999999999999884

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=87.93  E-value=1.2  Score=28.98  Aligned_cols=45  Identities=16%  Similarity=0.307  Sum_probs=33.9

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      +...+.++++++.++++.+-+.-=++.+.++...++|||+++++.
T Consensus        52 ~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~   96 (214)
T 1wbh_A           52 ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG   96 (214)
T ss_dssp             TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS
T ss_pred             hhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC
Confidence            566778888888776655444433567899999999999998774

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=87.91  E-value=1.4  Score=29.35  Aligned_cols=42  Identities=10%  Similarity=0.120  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-------cccHHHHHHcCCCEEEEe
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-------PNTIDECAKAGANWIVSG   57 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-------~~ni~~~~~~Gad~vv~g   57 (82)
                      .++-++++++..|++|+.+.|=.|       .+-++.+.++|+|++++.
T Consensus        81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~  129 (262)
T 2ekc_A           81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP  129 (262)
T ss_dssp             HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred             HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence            455678888876578998875444       245677889999988874

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=87.86  E-value=2.5  Score=24.02  Aligned_cols=59  Identities=10%  Similarity=-0.080  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+.. --+.+......++|++.++     .++-++.+-...+++.+.
T Consensus        66 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l-----~KP~~~~~l~~~i~~~~~  125 (136)
T 3kto_A           66 SGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFI-----EKPFIEHVLVHDVQQIIN  125 (136)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEE-----ESSBCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHhe-----eCCCCHHHHHHHHHHHHh
Confidence            4677788888877777765554 4556677889999999874     345566655555655544

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=87.85  E-value=2.4  Score=25.29  Aligned_cols=59  Identities=17%  Similarity=0.170  Sum_probs=39.6

Q ss_pred             chHHHHHHHHHh--CCCCc-EEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLREN--YPTLN-IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~--~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++|+.  .+++| |.+.+--+.+...+..++||+.+     |.++=++.+-.+.+++.++
T Consensus        71 dG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~  132 (134)
T 3to5_A           71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGY-----IVKPFTAATLKEKLDKIFE  132 (134)
T ss_dssp             CHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEE-----EESSCCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHh
Confidence            456777777763  34566 45566677888899999999976     4455566655555555544

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=87.70  E-value=1.5  Score=30.48  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcC-CCEEEEecccc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAG-ANWIVSGTAVI   61 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~G-ad~vv~gs~i~   61 (82)
                      -|++.+..++.++++++.. ++||++++.+. ++.+.++++.| +|.+.+.-.-.
T Consensus       222 EqP~~~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~  275 (384)
T 2pgw_A          222 EQPTVSWSIPAMAHVREKV-GIPIVADQAAFTLYDVYEICRQRAADMICIGPREI  275 (384)
T ss_dssp             ECCSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred             eCCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhh
Confidence            4667777888888888876 69999999984 67888888766 78887754444

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=87.69  E-value=0.4  Score=32.48  Aligned_cols=49  Identities=12%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCcchHHHHHHH-HHh--CCCCcEEEEcCCC-cccHHHHHHcCCC
Q psy11601          4 EPGFGGQKFMQDMMPKVKWL-REN--YPTLNIEVDGGVG-PNTIDECAKAGAN   52 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~-~~~--~~~~~i~~dGGI~-~~ni~~~~~~Gad   52 (82)
                      ..||....-.++.+.-+++. +..  .++++|-+.|||+ .+.+..+.++|++
T Consensus       170 STGf~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~  222 (260)
T 1p1x_A          170 STGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE  222 (260)
T ss_dssp             CCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence            35665333344444455553 222  3579999999999 7788889998765

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1

Probab=87.66  E-value=0.91  Score=30.78  Aligned_cols=63  Identities=25%  Similarity=0.356  Sum_probs=45.3

Q ss_pred             CCCCCcchHHHHHH-HHH----hC-----CCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----NY-----PTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~~-----~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      |..-.|+..+++.. +|+    .+     ..++|.-=|+++++|+.++. +.++|++-+|++.++++|+..-++
T Consensus       182 G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~ii~  255 (261)
T 1m6j_A          182 GKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIIN  255 (261)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSHHHHHHHHG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcCHhhHHHHhcCCCCCeeEecHHHhChHHHHHHHH
Confidence            44555555555444 332    22     24789999999999998876 579999999999998777665443

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=87.66  E-value=1.5  Score=30.71  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .++.++++++.. +.|+.+=|-.+.+.+..+.++|+|.|+++.
T Consensus       213 ~~~~i~~l~~~~-~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~  254 (370)
T 1gox_A          213 SWKDVAWLQTIT-SLPILVKGVITAEDARLAVQHGAAGIIVSN  254 (370)
T ss_dssp             CHHHHHHHHHHC-CSCEEEECCCSHHHHHHHHHTTCSEEEECC
T ss_pred             hHHHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence            567788888876 689998788899999999999999999964

>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A

Probab=87.57  E-value=1.5  Score=29.77  Aligned_cols=42  Identities=12%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             CCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      .++|.==|.++++|+.++. +..+|++-+|++-+++++..+-+
T Consensus       210 ~~rIlYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~F~~Ii  252 (267)
T 3ta6_A          210 TVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLA  252 (267)
T ss_dssp             TSCEEECSCCCTTTHHHHHTSTTCCEEEECGGGGSHHHHHHHH
T ss_pred             cceEEEcCCcCHhHHHHHhcCCCCCEEEechHhcCHHHHHHHH
Confidence            5899999999999999887 57899999999988766554443

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=87.49  E-value=1.7  Score=24.30  Aligned_cols=42  Identities=10%  Similarity=0.072  Sum_probs=29.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEE-cCCCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~   56 (82)
                      +.++-++++++..+++|+.+. +.-+.+...+..++|++.++.
T Consensus        65 ~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~  107 (130)
T 3eod_A           65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLL  107 (130)
T ss_dssp             -CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred             CHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence            456777888887667776554 455666678899999998743

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=87.39  E-value=1.1  Score=31.60  Aligned_cols=41  Identities=22%  Similarity=0.504  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .++.|+++++.. ++|+.+=|-.+.+.+..+.++|+|.|+++
T Consensus       213 ~~~~i~~i~~~~-~~Pv~vkgv~t~e~a~~a~~aGad~I~vs  253 (380)
T 1p4c_A          213 NWEALRWLRDLW-PHKLLVKGLLSAEDADRCIAEGADGVILS  253 (380)
T ss_dssp             CHHHHHHHHHHC-CSEEEEEEECCHHHHHHHHHTTCSEEEEC
T ss_pred             cHHHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEc
Confidence            456788888876 58888877789999999999999999995

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=87.36  E-value=2.6  Score=23.76  Aligned_cols=59  Identities=7%  Similarity=-0.003  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+..+- +.+....+.++|++.+     +.++-++.+-...+++.++
T Consensus        65 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~~~  124 (137)
T 3hdg_A           65 GGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLF-----LPKPIEPGRLMETLEDFRH  124 (137)
T ss_dssp             CHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEE-----CCSSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCccee-----EcCCCCHHHHHHHHHHHHH
Confidence            467778888887777887766554 4567778899999876     4445566555555555443

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=87.33  E-value=2.5  Score=23.61  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             chHHHHHHHHHh--CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~--~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++.  .+++|+.+..+-..........+|++.++     .++-++.+-...+++.++.
T Consensus        61 ~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~l~~  122 (133)
T 3nhm_A           61 DGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYL-----VKPVKPPVLIAQLHALLAR  122 (133)
T ss_dssp             CHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEE-----eccCCHHHHHHHHHHHHhh
Confidence            467777888875  34788877777655555778888988753     3555666666666666654

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*

Probab=86.88  E-value=0.38  Score=32.45  Aligned_cols=61  Identities=18%  Similarity=0.253  Sum_probs=43.5

Q ss_pred             CCCCCcchHHHHHH-HHH----h-----CCCCcEEEEcCCCcccHHHHH-HcCCCEEEEeccccCCCCHHHHH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----N-----YPTLNIEVDGGVGPNTIDECA-KAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~-----~~~~~i~~dGGI~~~ni~~~~-~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      |+.-.|+..+++.. +|+    +     ...++|.-=|+++++|+.++. +.++|++-+|++.++ +|+..-+
T Consensus       172 G~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~Ii  243 (247)
T 1ney_A          172 GLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK-PEFVDII  243 (247)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGGGGS-THHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCHhHHHHHHcCCCCCeeEeehHHHH-HHHHHHH
Confidence            45555555555444 333    1     124789999999999998765 679999999999998 7765443

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=86.84  E-value=0.63  Score=33.86  Aligned_cols=46  Identities=24%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             CcchHHHHHHHHHhCCC-CcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         13 MQDMMPKVKWLRENYPT-LNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~-~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      ....++.++++++..++ +++.+-+..+.+.+..+.++|+|.+++|.
T Consensus       267 ~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~  313 (503)
T 1me8_A          267 SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGI  313 (503)
T ss_dssp             SHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred             ccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecc
Confidence            34467778778877655 78887777889999999999999998863

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=86.82  E-value=1  Score=30.80  Aligned_cols=50  Identities=10%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             CCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEE
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVS   56 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~   56 (82)
                      |+--|++.++.++.++++++.. ++||++++.+ +.+.+.++++.| +|.+.+
T Consensus       213 ~~iE~P~~~~~~~~~~~l~~~~-~ipia~dE~~~~~~~~~~~i~~~~~d~v~i  264 (345)
T 2zad_A          213 AVYEQPVRREDIEGLKFVRFHS-PFPVAADESARTKFDVMRLVKEEAVDYVNI  264 (345)
T ss_dssp             SEEECCSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             eeeeCCCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence            4667888888888999998875 6999999998 567777787777 676655

>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}

Probab=86.81  E-value=2  Score=29.35  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             CCCCCcchHHHHHH-HHHh-----CCCCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHH
Q psy11601          9 GQKFMQDMMPKVKW-LREN-----YPTLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRI   67 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~~-----~~~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~   67 (82)
                      |+.-.|+....+.. ||+.     ...++|.==|+++++|+.++... .+|++-+|++-+++++..
T Consensus       200 G~tAt~e~aqevh~~IR~~l~~~~a~~~rIlYGGSV~~~N~~el~~~~dIDG~LVGgASL~~~~F~  265 (272)
T 4g1k_A          200 GKSATAEQAQQVHAFLRGRLAAKGAGHVSLLYGGSVKADNAAELFGQPDIDGGLIGGASLKSGDFL  265 (272)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCTTSCEEECSCCCTTTHHHHHTSTTCCEEEECGGGGSHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCceEEEcCCcCHhHHHHHhcCCCCCEEEechHhcCHHHHH
Confidence            44445555555443 4432     23589999999999999999865 899999999887655443

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=86.52  E-value=1.2  Score=30.64  Aligned_cols=40  Identities=10%  Similarity=0.054  Sum_probs=33.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEE
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWI   54 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~v   54 (82)
                      -..++.|+++++.. .+|+.+.+++. .+.+..+.++|||.|
T Consensus        64 ~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD~I  104 (297)
T 4adt_A           64 SVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVDML  104 (297)
T ss_dssp             CCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred             CCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCCEE
Confidence            35788889998876 69999988776 777888889999998

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=86.33  E-value=2.8  Score=23.01  Aligned_cols=57  Identities=16%  Similarity=0.013  Sum_probs=38.0

Q ss_pred             chHHHHHHHHHh--CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLREN--YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~--~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++-++++++.  .+++|+.+.+.-+.+......+.|++.++     .++-++.+-...+++.
T Consensus        64 ~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~i~~~  122 (127)
T 2gkg_A           64 NGYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRKLKAHADEYV-----AKPVDADQLVERAGAL  122 (127)
T ss_dssp             BHHHHHHHHHHSTTTTTSCEEEEECGGGHHHHHHSTTCCSEEE-----ESSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCccccCCCEEEEecCCchhHHHHHHhCcchhe-----eCCCCHHHHHHHHHHH
Confidence            456677778876  56788777666666778888899998764     3444555544555444

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=86.06  E-value=2.5  Score=23.98  Aligned_cols=42  Identities=7%  Similarity=0.013  Sum_probs=30.7

Q ss_pred             chHHHHHHHHH--hCCCCcEEEEcC-CCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLRE--NYPTLNIEVDGG-VGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~--~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~   56 (82)
                      +.++-++++++  ..+++|+.+..+ -+.+.+..+.++|++.++.
T Consensus        65 ~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~  109 (140)
T 3lua_A           65 EGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYIL  109 (140)
T ss_dssp             HHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEE
T ss_pred             cHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence            45677788887  556777665554 5667888999999998754

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=85.94  E-value=1.5  Score=30.37  Aligned_cols=52  Identities=10%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecccc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVI   61 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~   61 (82)
                      -|++.++.++.++++++.. ++||++++.+ +.+.+.++++.| +|.+.+--.-.
T Consensus       223 EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~  276 (371)
T 2ovl_A          223 EEPTIPDDLVGNARIVRES-GHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNI  276 (371)
T ss_dssp             ECCSCTTCHHHHHHHHHHH-CSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTT
T ss_pred             ECCCCcccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCcccc
Confidence            4677777888888888765 5899999998 567788887776 67766554433

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=85.83  E-value=3  Score=22.88  Aligned_cols=55  Identities=18%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      +.++-++++++..++.|+.+..+ -+.+......++|++.++     .++-++.+-...++
T Consensus        61 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~  116 (120)
T 1tmy_A           61 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFI-----VKPFQPSRVVEALN  116 (120)
T ss_dssp             CHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeE-----eCCCCHHHHHHHHH
Confidence            45667778887767777666554 556677888899998764     34445554444443

>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A

Probab=85.54  E-value=3.2  Score=27.96  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=36.3

Q ss_pred             CCcEEEEcCCCcccHHH----HHHcCCCEEEEe--ccccCC---CCHHHHHHHHHHHHHHhh
Q psy11601         29 TLNIEVDGGVGPNTIDE----CAKAGANWIVSG--TAVINC---PDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~----~~~~Gad~vv~g--s~i~~~---~d~~~~~~~l~~~~~~~~   81 (82)
                      .+-++-.|||+.+|+.+    ++++|+..++=-  |+|...   ..--+.+++|.+.+++.+
T Consensus       187 g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~l~  248 (249)
T 3m0z_A          187 DFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLV  248 (249)
T ss_dssp             TCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHHHC
T ss_pred             CceECCCCCccHhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHhh
Confidence            57899999999999976    467899887633  555532   122356666666666643

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=85.38  E-value=2.3  Score=25.74  Aligned_cols=42  Identities=19%  Similarity=0.075  Sum_probs=31.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~   56 (82)
                      +.++-++++++..+++||.+.. --+.+......++||+.++.
T Consensus        65 ~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~  107 (184)
T 3rqi_A           65 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLA  107 (184)
T ss_dssp             ESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred             cHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHhee
Confidence            4677788888877778866554 45566788899999998865

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=85.35  E-value=4  Score=26.08  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhCCCCcEEE-------EcCC----CcccHHHHHHcCCCEEEEeccccCCC---CHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEV-------DGGV----GPNTIDECAKAGANWIVSGTAVINCP---DRIQAISTLKSS   76 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~-------dGGI----~~~ni~~~~~~Gad~vv~gs~i~~~~---d~~~~~~~l~~~   76 (82)
                      .+.++++++.. ++|+..       ++++    +.+.+..+.++|||.+.++......+   .+.+.++.+++.
T Consensus        58 ~~~i~~i~~~~-~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~  130 (234)
T 1yxy_A           58 VRDIKEIQAIT-DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEK  130 (234)
T ss_dssp             HHHHHHHHTTC-CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHh
Confidence            35566666654 577632       2232    34678999999999999987765432   456666666654

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=85.34  E-value=1.4  Score=28.95  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=33.5

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEec
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      +...+.|+++++.++++.+-+.-=++.+.++...++|||+++++.
T Consensus        62 ~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p~  106 (225)
T 1mxs_A           62 QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG  106 (225)
T ss_dssp             THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS
T ss_pred             ccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeCC
Confidence            456777888888776665544443566889999999999998773

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=85.33  E-value=3.3  Score=23.06  Aligned_cols=58  Identities=19%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHhC--CCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENY--PTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~--~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..  +..+|.+..+-+.+.+.+..++|++.+     +.++-++.+-...+++..
T Consensus        64 ~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~~  123 (132)
T 3lte_A           64 DGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDY-----LEKPFDNDALLDRIHDLV  123 (132)
T ss_dssp             CHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEE-----ECSSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHH-----hhCCCCHHHHHHHHHHHc
Confidence            4567778888764  457888888888888889999999876     445556665555555543

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=85.12  E-value=1.9  Score=24.42  Aligned_cols=57  Identities=9%  Similarity=-0.007  Sum_probs=37.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEE-cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++-++++++..+++|+.+. +--+.+....+.++|++.++.     ++-++.+-...+++.
T Consensus        73 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~L~~~i~~~  130 (135)
T 3snk_A           73 LGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLH-----KPLDGKELLNAVTFH  130 (135)
T ss_dssp             GGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhcc-----CCCCHHHHHHHHHHH
Confidence            345566777777667776555 445667788899999998744     455665555555443

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=85.10  E-value=1.8  Score=29.70  Aligned_cols=50  Identities=8%  Similarity=0.189  Sum_probs=38.2

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTA   59 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~   59 (82)
                      -|++.++.++.++++++.. ++||++++.+ +++.+.++++.| +|.+.+--.
T Consensus       221 E~P~~~~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~  272 (359)
T 1mdl_A          221 EEPTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGACRLAMPDAM  272 (359)
T ss_dssp             ECCSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred             ECCCChhhHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeecch
Confidence            4677777888888888875 6999999998 567778877776 677765433

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=85.00  E-value=1.2  Score=30.24  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-------cccHHHHHHcCCCEEEEecc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-------PNTIDECAKAGANWIVSGTA   59 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-------~~ni~~~~~~Gad~vv~gs~   59 (82)
                      ..++-++++|+...++|+.+-|=.|       .+-++.+.++|+|++++.-.
T Consensus        83 ~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDl  134 (271)
T 3nav_A           83 ICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADV  134 (271)
T ss_dssp             HHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTS
T ss_pred             HHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCC
Confidence            5677888888875578988876222       44578899999999888543

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=84.68  E-value=5.1  Score=24.65  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=25.8

Q ss_pred             HHHHHHhC-CCCcEEEEcCCCcccHHHHHHcCCCEEE
Q psy11601         20 VKWLRENY-PTLNIEVDGGVGPNTIDECAKAGANWIV   55 (82)
Q Consensus        20 i~~~~~~~-~~~~i~~dGGI~~~ni~~~~~~Gad~vv   55 (82)
                      ++.+++.. ++++|.+-|.+..+....+.+.|+|.+.
T Consensus        90 i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~  126 (161)
T 2yxb_A           90 MAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIF  126 (161)
T ss_dssp             HHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEE
Confidence            44456653 3688888777777777788999999643

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=84.41  E-value=5.6  Score=25.36  Aligned_cols=60  Identities=20%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc--ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~--~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      ..++.++++++.. +.++.+.-=++.  +.++.+.++|+|++.+....+..+.+.+.++.+++
T Consensus        55 ~~~~~i~~l~~~~-~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~  116 (230)
T 1rpx_A           55 IGPLVVDSLRPIT-DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKS  116 (230)
T ss_dssp             CCHHHHHHHGGGC-CSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHH
T ss_pred             cCHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHH
Confidence            3467778888765 456777666665  46889999999999877553333566666666553

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=84.40  E-value=0.91  Score=29.45  Aligned_cols=33  Identities=12%  Similarity=0.044  Sum_probs=27.6

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEec-cccC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGT-AVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs-~i~~   62 (82)
                      ++|+.|-|+|+ .+.+.+ +++||+.++.++ .+|.
T Consensus       149 ~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~  183 (188)
T 1vkf_A          149 GRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK  183 (188)
T ss_dssp             TSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred             CCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence            68999999996 567778 999999999994 4775

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=84.39  E-value=1.4  Score=30.14  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=35.9

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      +-++++++..|+.+|.+.-- +.+.+.+..++|+|.+.+..  |.+++.++.++.++
T Consensus       183 ~av~~ar~~~~~~~I~Vev~-t~eea~eal~aGaD~I~LDn--~~~~~~~~~v~~l~  236 (284)
T 1qpo_A          183 DALRAVRNAAPDLPCEVEVD-SLEQLDAVLPEKPELILLDN--FAVWQTQTAVQRRD  236 (284)
T ss_dssp             HHHHHHHHHCTTSCEEEEES-SHHHHHHHGGGCCSEEEEET--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEeC-CHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhh
Confidence            45677777766334444333 68999999999999888877  44455555555544

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=84.38  E-value=2.9  Score=29.15  Aligned_cols=50  Identities=6%  Similarity=0.106  Sum_probs=38.5

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTA   59 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~   59 (82)
                      -|++.++.++.++++++.. ++||++++.+ +++.+.++++.| +|.+.+--.
T Consensus       226 EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  277 (391)
T 2qgy_A          226 EEPVDGENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISRNAADIFNPDIS  277 (391)
T ss_dssp             ECSSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred             eCCCChhhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcc
Confidence            4677777888889988876 6999999998 568888888777 676655433

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=84.32  E-value=1.4  Score=30.25  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCcchHHHHHHHH-Hh-------CCCCcEEEEcCCCc-ccHHHHHHcCCC
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLR-EN-------YPTLNIEVDGGVGP-NTIDECAKAGAN   52 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~-~~-------~~~~~i~~dGGI~~-~ni~~~~~~Gad   52 (82)
                      ..||....-.++..+-+++.. ..       .++++|-+.|||+- +.+..++++|++
T Consensus       192 STGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~  249 (281)
T 2a4a_A          192 STGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR  249 (281)
T ss_dssp             CCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence            356664333444555555533 22       45799999999983 566678888665

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=84.31  E-value=2.5  Score=29.25  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=38.6

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc--ccHHHHHHcC-CCEEEEec
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAG-ANWIVSGT   58 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~--~ni~~~~~~G-ad~vv~gs   58 (82)
                      -|++.++.++.++++++.. ++||++++.+.-  +.+.++++.| +|.+.+--
T Consensus       232 E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~  283 (382)
T 1rvk_A          232 EEPMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACDILRTGV  283 (382)
T ss_dssp             ECCSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCSEEEECH
T ss_pred             eCCCChhhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCc
Confidence            4677778888889988876 699999999854  7888888776 67776643

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=84.26  E-value=4.3  Score=23.40  Aligned_cols=57  Identities=11%  Similarity=0.011  Sum_probs=37.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEE-cCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~d-GGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++-++++++..+++|+.+. +.-+.+.+.+....| ++.++.     ++-++.+-...++..
T Consensus        62 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~-----KP~~~~~L~~~i~~~  120 (151)
T 3kcn_A           62 EGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLN-----KPCQMSDIKAAINAG  120 (151)
T ss_dssp             CHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEE-----SSCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEc-----CCCCHHHHHHHHHHH
Confidence            467778888887777776554 455566778888999 887743     344554444444443

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=84.17  E-value=6  Score=25.05  Aligned_cols=59  Identities=10%  Similarity=-0.037  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+..+ -+.+......++||+.++.     ++-++.+-...++..++
T Consensus        81 ~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~-----Kp~~~~~L~~~i~~~~~  140 (250)
T 3r0j_A           81 DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT-----KPFSLEEVVARLRVILR  140 (250)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEE-----SSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHH
Confidence            46777888888766777665544 5567778889999998754     45566666666665554

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=84.14  E-value=4.4  Score=23.41  Aligned_cols=59  Identities=14%  Similarity=0.161  Sum_probs=39.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+..+ -+.+.......+| ++.++     .++-++.+-...+++.++
T Consensus        72 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l-----~KP~~~~~l~~~i~~~l~  132 (153)
T 3hv2_A           72 DGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYL-----SKPWDDQELLLALRQALE  132 (153)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEE-----CSSCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEE-----eCCCCHHHHHHHHHHHHH
Confidence            46777788888777788666555 5566777888999 88764     344455555555555443

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=84.00  E-value=2.1  Score=29.48  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=39.2

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecc
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTA   59 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~   59 (82)
                      +--|++.++.++.++++++.. ++||++++.+ +++.+.++++.| +|.+.+--.
T Consensus       216 ~iEqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~  269 (369)
T 2p8b_A          216 WIEQPVIADDIDAMAHIRSKT-DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLM  269 (369)
T ss_dssp             CEECCBCTTCHHHHHHHHHTC-CSCEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             EEECCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence            335778778888899988875 6999999998 556777777765 777766543

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=83.96  E-value=1  Score=28.38  Aligned_cols=43  Identities=16%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCC--ccc-HHHHHHcCCCEEEE
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVG--PNT-IDECAKAGANWIVS   56 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~--~~n-i~~~~~~Gad~vv~   56 (82)
                      +...+-++++++..++.|+.++=++.  +++ ++.+.++|||++.+
T Consensus        38 ~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~v   83 (207)
T 3ajx_A           38 AEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTV   83 (207)
T ss_dssp             HHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE
T ss_pred             hhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEE
Confidence            44555677777776567877654433  234 78899999999875

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=83.96  E-value=1.6  Score=30.48  Aligned_cols=47  Identities=6%  Similarity=0.025  Sum_probs=36.8

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEE
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVS   56 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~   56 (82)
                      -|++.++.++..+++++.. ++||++++.+ +++.+.++++.| +|.+.+
T Consensus       239 E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  287 (393)
T 2og9_A          239 EEPLDAYDHEGHAALALQF-DTPIATGEMLTSAAEHGDLIRHRAADYLMP  287 (393)
T ss_dssp             ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             ECCCCcccHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHCCCCCEEee
Confidence            4677777888888888876 6999999998 557788888777 676644

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=83.95  E-value=1  Score=30.38  Aligned_cols=45  Identities=13%  Similarity=0.150  Sum_probs=33.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-------cccHHHHHHcCCCEEEEecc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-------PNTIDECAKAGANWIVSGTA   59 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-------~~ni~~~~~~Gad~vv~gs~   59 (82)
                      ..++-++++|+...++|+..-|=.|       ..-++.+.++|+|++++.-.
T Consensus        81 ~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dl  132 (267)
T 3vnd_A           81 DCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADV  132 (267)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTS
T ss_pred             HHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCC
Confidence            4577788888774578888876444       34578999999999988533

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=83.94  E-value=2.3  Score=29.31  Aligned_cols=50  Identities=14%  Similarity=0.072  Sum_probs=38.2

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTA   59 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~   59 (82)
                      -|++.++.++.++++++.. ++||++++.+ +.+.+.++++.| +|.+.+--.
T Consensus       220 EqP~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  271 (370)
T 1nu5_A          220 EQPVPRANFGALRRLTEQN-GVAILADESLSSLSSAFELARDHAVDAFSLKLC  271 (370)
T ss_dssp             ECCSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred             eCCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchh
Confidence            4677778888889988875 6999999988 457777887776 777766433

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=83.58  E-value=4.2  Score=22.81  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=38.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+++|+.+..+ -+.+......++|++.++.     ++-++.+-...++..+
T Consensus        66 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~l~~~~  124 (140)
T 2qr3_A           66 EGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVV-----KPWDNQKLLETLLNAA  124 (140)
T ss_dssp             CHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEE-----ESCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheee-----CCCCHHHHHHHHHHHH
Confidence            46677788888777788666554 4556778889999988754     3445555555555544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=83.31  E-value=2  Score=30.75  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      +..++.++++++..|.+|+.+-|..+.+.+..+.++|+|.+.+|
T Consensus       259 ~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg  302 (491)
T 1zfj_A          259 AGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVG  302 (491)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             hhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEEC
Confidence            35677888888887778888656667888889999999999887

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=83.23  E-value=2  Score=30.75  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ...+.|+++++.. ++++.+-+-.+.+.+..+.++|||.|++|
T Consensus       171 ~~~e~I~~ik~~~-~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG  212 (400)
T 3ffs_A          171 NIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVG  212 (400)
T ss_dssp             HHHHHHHHHHTTC-CCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             cHHHHHHHHHhcC-CCeEEEeecCCHHHHHHHHHcCCCEEEEe
Confidence            4467788888765 57777645578899999999999999995

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=82.91  E-value=4.4  Score=22.47  Aligned_cols=58  Identities=16%  Similarity=0.013  Sum_probs=38.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+++|+.+..+ -+.+......++|++.++     .++-++.+-...+++.+
T Consensus        61 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l-----~Kp~~~~~l~~~i~~~~  119 (126)
T 1dbw_A           61 SGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFI-----EKPFEDTVIIEAIERAS  119 (126)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHhe-----eCCCCHHHHHHHHHHHH
Confidence            45666777877666778666554 456677889999998764     34456655555555544

>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}

Probab=82.89  E-value=2.4  Score=28.39  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      .++|.-=|+++++|+.++.. ..+|++-+|++=+. ++...-+
T Consensus       199 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~-~~F~~Ii  240 (244)
T 2v5b_A          199 QLRILYGGSVTAKNARTLYQMRDINGFLVGGASLK-PEFVEII  240 (244)
T ss_dssp             HCEEEECSCCCHHHHHHHHTSTTCCEEEESGGGSS-TTHHHHH
T ss_pred             cccEEEcCCCCHhHHHHHhcCCCCCeeeechHHHH-HHHHHHH
Confidence            47899999999999998874 57999999998887 7765443

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=82.82  E-value=5  Score=23.07  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..+++|+.+..+- +.+.+......|++.+     +.++-++.+-...++..++
T Consensus        64 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~-----l~kp~~~~~L~~~l~~~~~  123 (154)
T 2qsj_A           64 EAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGF-----IPKSADPQVLIHAVSLILE  123 (154)
T ss_dssp             -CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBB-----CCTTSCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEE-----EeCCCCHHHHHHHHHHHHc
Confidence            456677888887777887776554 4567788889998865     4445566655555555443

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=82.42  E-value=5.1  Score=22.89  Aligned_cols=58  Identities=21%  Similarity=0.187  Sum_probs=32.5

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+.+|+.+..+ -+.+.+....+.|++.+     |.++-++.+-...+++.+
T Consensus        63 ~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~-----l~KP~~~~~L~~~i~~~~  121 (141)
T 3cu5_A           63 DGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRY-----VEKPIDPSEIMDALKQSI  121 (141)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEE-----ECSSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEE-----EeCCCCHHHHHHHHHHHH
Confidence            45667777877777788766655 45567778889998866     344445555445554443

>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}

Probab=82.36  E-value=1.8  Score=29.60  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             CCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRIQ   68 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~~   68 (82)
                      .++|.==|.++++|+.++... .+|++-+|++-+++++..+
T Consensus       227 ~~rIlYGGSV~~~Na~el~~~~dIDG~LVGgASL~~~~F~~  267 (275)
T 3kxq_A          227 KIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLKAIDFLT  267 (275)
T ss_dssp             TSCEEECSCCCTTTHHHHHTSTTCCEEEESGGGSSHHHHHH
T ss_pred             cceEEEcCCcCHhHHHHHHcCCccceEEeehhhcCHHHHHH
Confidence            589999999999999999865 8999999998886655443

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=82.32  E-value=0.94  Score=38.52  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHH-----------HcCCCEEEEeccccC
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECA-----------KAGANWIVSGTAVIN   62 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~-----------~~Gad~vv~gs~i~~   62 (82)
                      .+.-+.++++.. ++|+.+.|||. .+-+..++           ..|||++-+||.+..
T Consensus       750 ~l~l~~~v~~~~-~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~  807 (2051)
T 2uv8_G          750 MLQMYSKIRRHP-NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMI  807 (2051)
T ss_dssp             HHHHHHHHTTCT-TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTT
T ss_pred             HHHHHHHHHhcC-CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHh
Confidence            445567777764 69999999995 45566777           799999999999775

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=82.17  E-value=5.4  Score=23.00  Aligned_cols=42  Identities=14%  Similarity=0.085  Sum_probs=31.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~   56 (82)
                      ..++-++++++..+++|+.+..+ -+.+........|++.++.
T Consensus        61 ~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~  103 (155)
T 1qkk_A           61 DGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA  103 (155)
T ss_dssp             CHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEe
Confidence            45677788888777788776655 4556778889999998754

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=82.10  E-value=3.2  Score=28.98  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=39.3

Q ss_pred             CCCCCcchHHHHHHHHH-hCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecccc
Q psy11601          9 GQKFMQDMMPKVKWLRE-NYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVI   61 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~-~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~   61 (82)
                      -|++.++.++.++++++ .. ++||++|+.+ +.+.+.++++.| +|.+.+--.-.
T Consensus       227 EqP~~~~d~~~~~~l~~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~  281 (401)
T 2hzg_A          227 EEPFDAGALAAHAALAGRGA-RVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRI  281 (401)
T ss_dssp             ECCSCTTCHHHHHHHHTTCC-SSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHH
T ss_pred             ECCCCccCHHHHHHHHhhCC-CCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchh
Confidence            46677778888888887 54 6999999998 557888888766 78777654433

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=82.05  E-value=1.6  Score=30.46  Aligned_cols=48  Identities=6%  Similarity=-0.013  Sum_probs=37.3

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcC-CCEEEEe
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAG-ANWIVSG   57 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~G-ad~vv~g   57 (82)
                      -|++.++.++.++++++.. ++||++++.+. ++.+.++++.| +|.+.+-
T Consensus       240 EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik  289 (388)
T 2nql_A          240 EAPVWTEDIAGLEKVSKNT-DVPIAVGEEWRTHWDMRARIERCRIAIVQPE  289 (388)
T ss_dssp             ECCSCTTCHHHHHHHHTSC-CSCEEECTTCCSHHHHHHHHTTSCCSEECCC
T ss_pred             ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence            4677777888888888865 69999999984 67788888776 6776553

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=81.84  E-value=4.9  Score=22.33  Aligned_cols=58  Identities=19%  Similarity=0.156  Sum_probs=38.0

Q ss_pred             chHHHHHHHHHh--CCCCcEEE-EcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLREN--YPTLNIEV-DGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~--~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++.  .+++|+.+ .+.-+.+......++|++.++     .++-++.+-...+++.+
T Consensus        60 ~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l-----~KP~~~~~L~~~i~~~l  120 (122)
T 3gl9_A           60 DGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVM-----RKPFSPSQFIEEVKHLL  120 (122)
T ss_dssp             CHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhc-----cCCCCHHHHHHHHHHHh
Confidence            456677777764  24677555 444567778889999999764     45556666556665554

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=81.75  E-value=5.2  Score=22.58  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      ..++-++++++..+++|+.+..+ -+.+......+.|++.++     .++-++.+-...++..+
T Consensus        61 ~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~  119 (142)
T 2qxy_A           61 ESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYI-----LKPFRLDYLLERVKKII  119 (142)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEE-----ESSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeE-----eCCCCHHHHHHHHHHHH
Confidence            45666778887777788666554 456667889999998764     34445555445555444

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=81.66  E-value=1.4  Score=24.65  Aligned_cols=57  Identities=12%  Similarity=0.031  Sum_probs=36.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCCc------ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVGP------NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~~------~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++-++++++..+++|+.+..+-..      +.+.....+|++.+     +.++-++.+-...+++.
T Consensus        60 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~l~~~  122 (135)
T 3eqz_A           60 DGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINT-----FTKPINTEVLTCFLTSL  122 (135)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEE-----EESSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCccee-----eCCCCCHHHHHHHHHHH
Confidence            45677888888877889888888765      44555666666554     34455555544545443

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=81.45  E-value=2.5  Score=29.54  Aligned_cols=47  Identities=6%  Similarity=-0.096  Sum_probs=36.7

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEE
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVS   56 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~   56 (82)
                      -|++.++.++.++++++.. ++||++++.+ +.+.+.++++.| +|.+.+
T Consensus       250 E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  298 (410)
T 2gl5_A          250 EEPIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRELLEKQSIAVAQP  298 (410)
T ss_dssp             ECSSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred             ECCCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            3667777888888888876 6999999998 567888888877 566644

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=81.38  E-value=5.3  Score=22.43  Aligned_cols=58  Identities=7%  Similarity=0.082  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+++|+.+..+- +.+.+.+....|++.++     .++-++.+-...+++.+
T Consensus        63 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l-----~Kp~~~~~L~~~i~~~~  121 (133)
T 3b2n_A           63 TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYV-----LKERSIEELVETINKVN  121 (133)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEE-----ETTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-----ECCCCHHHHHHHHHHHH
Confidence            456777788877677887766554 55677888899998875     34456655555555544

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=81.34  E-value=5  Score=22.09  Aligned_cols=57  Identities=14%  Similarity=0.024  Sum_probs=36.9

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +.++-++++++..+++|+.+..+ -+.+......+.|++.++     .++-++.+-...+++.
T Consensus        61 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~  118 (124)
T 1srr_A           61 DGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHF-----AKPFDIDEIRDAVKKY  118 (124)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEE-----ESSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhc-----cCCCCHHHHHHHHHHH
Confidence            35666777777667788766655 455667788899998764     3444555544445443

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=81.17  E-value=3.5  Score=28.35  Aligned_cols=50  Identities=20%  Similarity=0.151  Sum_probs=37.4

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEecc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTA   59 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~   59 (82)
                      -|++.++.++.++++++.. ++||++|+.+ +.+.+.++++.| +|.+.+--.
T Consensus       219 EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  270 (366)
T 1tkk_A          219 EQPVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFEVLQTRSADLINIKLM  270 (366)
T ss_dssp             ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             ECCCCcccHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehh
Confidence            4777778888899988876 6999999998 456677777665 777766433

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=81.16  E-value=1.3  Score=30.40  Aligned_cols=57  Identities=18%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEeccc
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSGTAV   60 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~gs~i   60 (82)
                      +|...|=|.....+.++.++.+..++-.+. +-.|-+...+..+...|+++++++.+=
T Consensus       160 ~pnIvgiKdssgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G~~G~is~~an  217 (316)
T 3e96_A          160 LQNLVGVKYAINDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKGFTSGLVN  217 (316)
T ss_dssp             CTTEEEEEECCCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHTCCEEEESGGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCCCCEEEechhh
Confidence            355666666666677888777654322455 666766666788889999999999763

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=80.91  E-value=7.4  Score=23.81  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=39.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEEc-CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDG-GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..++.|+.+.. .-+.+.+....+.||+.++.     ++-++.+-...++..+
T Consensus        65 ~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~-----Kp~~~~~L~~~i~~~~  123 (215)
T 1a04_A           65 NGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL-----KDMEPEDLLKALHQAA  123 (215)
T ss_dssp             CHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Confidence            4577788888877777766654 45677788899999998754     4445555555555443

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=80.88  E-value=5.4  Score=22.95  Aligned_cols=43  Identities=16%  Similarity=0.052  Sum_probs=31.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEe
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~g   57 (82)
                      +.++-++++++..+.+|+.+..+ -+.+....+...|++.++.-
T Consensus        65 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k  108 (153)
T 3cz5_A           65 GGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTK  108 (153)
T ss_dssp             CHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred             CHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence            46777888888777777666554 45677888999999987643

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=80.84  E-value=5.6  Score=22.31  Aligned_cols=58  Identities=10%  Similarity=0.043  Sum_probs=38.6

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+++|+.+..+- +.+......++|++.++.     ++-++.+-...+++.+
T Consensus        61 ~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~L~~~i~~~~  119 (132)
T 3crn_A           61 EGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIM-----KPVNPRDLLEKIKEKL  119 (132)
T ss_dssp             BHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhcc-----CCCCHHHHHHHHHHHH
Confidence            456677778877667887766554 566778888999998754     3445555555555444

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=80.72  E-value=2.8  Score=29.24  Aligned_cols=50  Identities=14%  Similarity=0.011  Sum_probs=37.7

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEe
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSG   57 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~g   57 (82)
                      +--|++.++.++..+++++.. ++||++++.+ +.+.+.++++.| +|.+.+-
T Consensus       219 ~iEqP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  270 (397)
T 2qde_A          219 KIEQPLPAWDLDGMARLRGKV-ATPIYADESAQELHDLLAIINKGAADGLMIK  270 (397)
T ss_dssp             CEECCSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             EEECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence            334677777888888888765 6999999998 456777777765 7777664

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=80.72  E-value=5.4  Score=22.13  Aligned_cols=60  Identities=10%  Similarity=0.055  Sum_probs=38.9

Q ss_pred             chHHHHHHHHHhC--CCCcEEEE-cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENY--PTLNIEVD-GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~--~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ..++-++++++..  +++|+.+. +.-+.+......++|++.++.     ++-++.+-...+++.++.
T Consensus        69 ~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l~~~i~~~~~~  131 (140)
T 1k68_A           69 DGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT-----KSANLSQLFQIVKGIEEF  131 (140)
T ss_dssp             CHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheec-----CCCCHHHHHHHHHHHHHH
Confidence            4667778888754  46776555 445667788899999998743     344555555555555443

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=80.37  E-value=7.6  Score=23.57  Aligned_cols=56  Identities=11%  Similarity=-0.040  Sum_probs=37.2

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.++-++++++..+++|+.+..+ -+.+.+....++||+.++.     ++-++.+-...++.
T Consensus        62 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~-----Kp~~~~~L~~~i~~  118 (208)
T 1yio_A           62 SGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLP-----KPFEEQALLDAIEQ  118 (208)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEE-----SSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEe-----CCCCHHHHHHHHHH
Confidence            46777888888777778666554 5567788899999987754     34455444444443

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=80.31  E-value=1.8  Score=27.34  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             cchHHHHHHHHHhCCCCcEEE-EcC-CCcccHHHHHHcCCCEEEEec
Q psy11601         14 QDMMPKVKWLRENYPTLNIEV-DGG-VGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~-dGG-I~~~ni~~~~~~Gad~vv~gs   58 (82)
                      +..++.|+++++.. +.++.+ .|+ .+.+.+..+.++|||++.+++
T Consensus        43 ~~~~~~i~~i~~~~-~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~   88 (212)
T 2v82_A           43 PQWEQSIPAIVDAY-GDKALIGAGTVLKPEQVDALARMGCQLIVTPN   88 (212)
T ss_dssp             TTHHHHHHHHHHHH-TTTSEEEEECCCSHHHHHHHHHTTCCEEECSS
T ss_pred             hhHHHHHHHHHHhC-CCCeEEEeccccCHHHHHHHHHcCCCEEEeCC
Confidence            44567777777654 244333 333 457779999999999998654

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=80.10  E-value=1.7  Score=30.29  Aligned_cols=50  Identities=12%  Similarity=0.051  Sum_probs=39.1

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-----CCEEEEecc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-----ANWIVSGTA   59 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-----ad~vv~gs~   59 (82)
                      -|++.++.++.++++++.. ++||++++.+ +.+.+..+++.|     +|.+..--.
T Consensus       242 EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~  297 (392)
T 1tzz_A          242 EEVGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCA  297 (392)
T ss_dssp             ECCSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTT
T ss_pred             cCCCChhhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECcc
Confidence            4677778888888888765 6999999998 467788888887     787765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1h1ya_	220	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {R	6e-22
d1rpxa_	230	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	3e-21
d1tqxa_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	7e-21
d1tqja_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {S	5e-20
d2flia1	217	c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimera	3e-17
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	8e-17
d2czda1	206	c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar	1e-05
d1o4ua1	170	c.1.17.1 (A:104-273) Quinolinic acid phosphoribosy	7e-05
d1km4a_	212	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	0.002

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Length = 220

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 82.6 bits (203), Expect = 6e-22
 Identities = 46/79 (58%), Positives = 61/79 (77%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQKFM +MM KV+ LR+ YP+L+IEVDGG+GP+TID  A AGAN IV+G+++
Sbjct: 140 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSI 199

Query: 61  INCPDRIQAISTLKSSVQK 79
               +  + IS L+ SV+ 
Sbjct: 200 FGAAEPGEVISALRKSVEG 218

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 80.9 bits (199), Expect = 3e-21
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F++  + K+        E      IEVDGGVGP    +  +AGAN +V+
Sbjct: 147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVA 206

Query: 57  GTAVINCPDRIQAISTLKSSVQK 79
           G+AV   PD  +AI  +K+S + 
Sbjct: 207 GSAVFGAPDYAEAIKGIKTSKRP 229

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 79.9 bits (196), Expect = 7e-21
 Identities = 45/80 (56%), Positives = 55/80 (68%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
           MTVEPGFGGQ FM DMM KV +LR+ Y  LNI+VDGG+   T +  A  GAN IV+GT++
Sbjct: 142 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSI 201

Query: 61  INCPDRIQAISTLKSSVQKY 80
            N  D    I T++ SVQKY
Sbjct: 202 FNAEDPKYVIDTMRVSVQKY 221

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score = 77.5 bits (190), Expect = 5e-20
 Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 4/82 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPT----LNIEVDGGVGPNTIDECAKAGANWIVS 56
           M+V PGFGGQ F+ +++PK++ LR+          IEVDGG+ PN   +  +AGAN IV+
Sbjct: 139 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVA 198

Query: 57  GTAVINCPDRIQAISTLKSSVQ 78
           G+AV N P+  +AI+ +++S +
Sbjct: 199 GSAVFNAPNYAEAIAGVRNSKR 220

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Length = 217

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 70.5 bits (172), Expect = 3e-17
 Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 1   MTVEPGFGGQKFMQDMMPKVK----WLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVS 56
           MTV PGFGGQ F+ + + KV     W  E   + +IEVDGGV   TI  C +AGAN  V+
Sbjct: 136 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVA 195

Query: 57  GTAVINCPDRIQAISTLKSSV 77
           G+ +    D +  + TL++++
Sbjct: 196 GSYLFKASDLVSQVQTLRTAL 216

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 69.1 bits (168), Expect = 8e-17
 Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV 60
            + +    G  + +  +  +K L        + V GG+    +        +  ++G ++
Sbjct: 135 RSRDAQAAGVAWGEADITAIKRLS--DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSI 192

Query: 61  INCPDRIQAISTLKSSVQKY 80
            +    ++A    K S+ + 
Sbjct: 193 RDAASPVEAARQFKRSIAEL 212

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.2 bits (90), Expect = 1e-05
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP--NTIDECAKAGANWIVSGT 58
           +  E    G         ++ ++R+        +  G+G       +  KAGA++I+ G 
Sbjct: 127 VANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGR 186

Query: 59  AVINCPDRIQAISTLKSSVQ 78
           A+ N P+  +A   +   ++
Sbjct: 187 AIYNAPNPREAAKAIYDEIR 206

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 170

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 7e-05
 Identities = 7/45 (15%), Positives = 19/45 (42%)

Query: 13  MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG 57
            +++    + +++  P + +EV GG+    +        + I S 
Sbjct: 109 PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSS 153

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 1   MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTA 59
           M V+ G            ++  LRE     +  +  GVG            A+ I+ G +
Sbjct: 135 MGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRS 194

Query: 60  VINCPDRIQAISTLKSSV 77
           +    +   A + +  S+
Sbjct: 195 IYLADNPAAAAAGIIESI 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	99.94
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	99.94
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	99.91
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	99.91
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	99.9
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.63
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	99.53
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	99.36
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.91
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	98.8
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	98.78
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.78
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	98.75
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.7
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	98.59
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.49
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.48
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	98.45
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	98.44
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	98.44
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.43
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	98.32
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.28
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	98.18
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	98.17
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	98.13
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	98.02
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	97.93
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	97.89
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	97.81
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	97.63
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.6
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.58
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.51
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.5
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	97.49
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.33
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	97.32
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	97.31
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.25
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.24
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	97.24
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.17
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	97.13
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.1
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.09
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	97.09
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.07
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	97.01
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	97.0
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	96.93
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	96.88
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	96.84
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	96.8
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.75
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	96.73
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.73
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	96.69
d2q8za1	323	Protozoan orotidine monophosphate decarboxylase {P	96.63
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	96.61
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	96.61
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	96.6
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	96.55
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	96.54
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	96.54
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	96.5
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	96.4
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	96.38
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	96.32
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	96.14
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	95.99
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	95.98
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	95.95
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	95.94
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	95.81
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	95.62
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	95.44
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	95.3
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	95.23
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	95.22
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.2
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	95.16
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	94.96
d1ytda1	270	Nicotinate phosphoribosyltransferase Ta1145 {Therm	94.85
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	94.74
d2i14a1	279	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	94.61
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	94.17
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	93.92
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	93.85
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	93.79
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	93.65
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	93.63
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	93.45
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	93.32
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	93.29
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	93.14
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	93.03
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	92.9
d2f7fa1	345	Putative nicotinate phosphoribosyltransferase EF26	92.52
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	91.95
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	91.95
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	91.92
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	91.81
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	91.77
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	91.59
d7reqb2	163	Methylmalonyl-CoA mutase beta subunit, C-terminal	91.39
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	90.97
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	90.93
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	90.92
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	90.88
d2z06a1	252	Hypothetical protein TTHA0625 {Thermus thermophilu	90.8
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	90.74
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	90.72
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	90.36
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	90.25
d5ruba1	320	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	90.15
d1t70a_	255	Putative phosphatase DR1281 {Deinococcus radiodura	90.01
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	89.69
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	89.54
d1m6ja_	260	Triosephosphate isomerase {Entamoeba histolytica [	89.21
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	89.09
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	88.51
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	88.46
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	87.02
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	87.0
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	86.65
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	86.49
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	86.39
d1t71a_	281	Hypothetical protein MPN349 {Mycoplasma pneumoniae	86.37
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	86.27
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	86.06
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	86.03
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	86.0
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	85.81
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	85.7
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	85.51
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	84.74
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	84.5
d1aw1a_	255	Triosephosphate isomerase {Vibrio marinus [TaxId:	84.05
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	83.45
d1k66a_	149	Response regulator for cyanobacterial phytochrome	83.34
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	82.97
d1mqsa_	653	Sly1P protein {Baker's yeast (Saccharomyces cerevi	81.49
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	81.17
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	81.02
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	80.07

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.94  E-value=1.8e-27  Score=158.06  Aligned_cols=80  Identities=56%  Similarity=0.880  Sum_probs=78.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+|+|||+||+|.++.++||+++|+.++++.|+||||||.+|++.+.++|||.+|+||+||+++|+++++++||+.++++
T Consensus       142 m~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~~~d~~~~i~~Lr~~i~k~  221 (221)
T d1tqxa_         142 MTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKY  221 (221)
T ss_dssp             ESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             EeecccccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHHHhhC
Confidence            89999999999999999999999999989999999999999999999999999999999999999999999999999875

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.94  E-value=8.9e-27  Score=154.64  Aligned_cols=79  Identities=58%  Similarity=0.968  Sum_probs=76.9

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      |+|+|||+||+|.+.+++||+++++.+++++|+|||||+.+|+..+.++|||.+|+||+||+++|+++++.+|++.+++
T Consensus       140 m~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~~d~~~~i~~lr~~~~~  218 (220)
T d1h1ya_         140 MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG  218 (220)
T ss_dssp             ESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             EecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999998875

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.91  E-value=5.8e-25  Score=145.61  Aligned_cols=77  Identities=40%  Similarity=0.702  Sum_probs=73.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |+|+|||+||+|.+..++|+++++++    +++++|++||||+.+|++.+.++|||.+|+||+||+++|+++++++|++.
T Consensus       136 M~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~~~d~~~~i~~lr~~  215 (217)
T d2flia1         136 MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA  215 (217)
T ss_dssp             ESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             EEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEchHHhCCCCHHHHHHHHHHh
Confidence            89999999999999999999998864    56799999999999999999999999999999999999999999999987


Q ss_pred             H
Q psy11601         77 V   77 (82)
Q Consensus        77 ~   77 (82)
                      +
T Consensus       216 i  216 (217)
T d2flia1         216 L  216 (217)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.91  E-value=9.4e-25  Score=145.86  Aligned_cols=76  Identities=46%  Similarity=0.713  Sum_probs=71.3

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      |||+|||+||+|.+.+++||++++++    ++++.|+|||||+.+|++.+.++|||.+|+||+||+++|+++++++|++.
T Consensus       147 M~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lk~~  226 (230)
T d1rpxa_         147 MSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS  226 (230)
T ss_dssp             ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             EEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHh
Confidence            89999999999999999999998764    56899999999999999999999999999999999999999999999853

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.90  E-value=1.2e-24  Score=144.49  Aligned_cols=75  Identities=45%  Similarity=0.756  Sum_probs=67.0

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHh----CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLREN----YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~----~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      |||+|||+||+|.+..++||++++++    ++++.|+||||||.+|+..+.++|||.+|+||+||+++|+++++++||+
T Consensus       139 M~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lr~  217 (221)
T d1tqja_         139 MSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRN  217 (221)
T ss_dssp             ESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             EEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHh
Confidence            89999999999999999999998764    5678999999999999999999999999999999999999999999985

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=8.8e-17  Score=102.54  Aligned_cols=78  Identities=13%  Similarity=0.260  Sum_probs=72.6

Q ss_pred             CccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601          1 MTVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         1 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      |+++||+.||.+.+..++++++.+..  ++++.++||++.+|+.++.++|||.+|+||+||+++||.++++++++.++++
T Consensus       135 ~~~~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~a~dp~~a~~~~~~~i~~~  212 (213)
T d1q6oa_         135 RSRDAQAAGVAWGEADITAIKRLSDM--GFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAEL  212 (213)
T ss_dssp             CCHHHHHTTCCCCHHHHHHHHHHHHT--TCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HhcccCcCCeeCCHHHHHHHHHhhcc--CceEecCCCcCcCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHHHh
Confidence            46778999999999999999998875  5899999999999999999999999999999999999999999999999875

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=99.53  E-value=3e-14  Score=92.34  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      ...|-.++.++++.+.. ++|++++|||+.+|+.++.++|+++|+++|+||+++||++.+++|++.+++.+
T Consensus       136 ~~~~~g~~~l~~~~~~~-~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~~~~  205 (206)
T d1xi3a_         136 DARVIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEVL  205 (206)
T ss_dssp             CCCCCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHhc-CCCEEEECCCCHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHHHHHHHHHHhh
Confidence            34567899999998876 69999999999999999999999999999999999999999999999999875

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.36  E-value=1e-12  Score=86.30  Aligned_cols=67  Identities=18%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +...+.++.+++...++|+++.|||+++|+.++.++|+++|+++|+||+++||.+++++|++.++++
T Consensus       156 ~~~~~~~~~~~~~~~~~Pv~AiGGI~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~~~  222 (226)
T d2tpsa_         156 VQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTY  222 (226)
T ss_dssp             CCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHH
Confidence            3456666777665557899999999999999999999999999999999999999999999998764

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=7.9e-10  Score=70.91  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=53.3

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEc-CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDG-GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dG-GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +..|........+.+..+++.. +++.+++.| |....+..+..++|+|.+|+|++|++++||.++++++++.++
T Consensus       132 ~~~g~~~~~~~~~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~~ik  206 (206)
T d2czda1         132 EPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (206)
T ss_dssp             CCSEEECCCSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             ccccccccccCchhhhhhhhhhcccceEECCCccccCCCHHHHHHhCCCEEEEChhhccCCCHHHHHHHHHHHhC
Confidence            3344443334445556666543 346666665 555568999999999999999999999999999999998764

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=5.2e-09  Score=66.05  Aligned_cols=53  Identities=19%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .|.|+.+.+.-+ ++...+++.+++.|||+++|+.+|+..|+|.+++|+..+++
T Consensus       107 N~sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~galt~sa  160 (169)
T d1qpoa1         107 NFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHSV  160 (169)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGGTSSB
T ss_pred             CcChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEECCccccCC
Confidence            467777777544 55567789999999999999999999999999999887753

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=9.7e-09  Score=66.38  Aligned_cols=71  Identities=20%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             CCCCCCCCcchH---HHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCH---HHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMM---PKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDR---IQAISTLKSSV   77 (82)
Q Consensus         6 G~~gq~~~~~~~---~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~---~~~~~~l~~~~   77 (82)
                      |+.-.++-|...   +.++.++...|+++++..|||+.+|+.+|+++|+..+.+||.+++. |+   ++.++++.+.+
T Consensus       123 G~~~lK~fPa~~~G~~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~~-~~~~i~~~a~~~~~~~  199 (202)
T d1wa3a1         123 GHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKG-TPDEVREKAKAFVEKI  199 (202)
T ss_dssp             TCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHCS-CHHHHHHHHHHHHHHH
T ss_pred             CCCEEEecchhhcCHHHHHHHhCcccCCcEEeeCCCCHHHHHHHHHCCCeEEEEchhhcCC-CHHHHHHHHHHHHHHH
Confidence            555555555443   4566677778899999999999999999999999999999999974 44   34444444433

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.78  E-value=7.4e-09  Score=65.67  Aligned_cols=60  Identities=15%  Similarity=0.207  Sum_probs=49.3

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +..++-++++++.. ++|+.++||| +.+++..+.++|||++++||+|.   +|.+..++|.+.+
T Consensus       161 ~~~~~~i~~~~~~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~---rp~~~~~~f~~~l  221 (222)
T d1y0ea_         161 QNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT---RPKEITKRFVQVM  221 (222)
T ss_dssp             HHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH---CHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc---CHHHHHHHHHHHh
Confidence            34567788887775 6999999999 68999999999999999999998   4666677766544

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.75  E-value=3.2e-09  Score=67.19  Aligned_cols=53  Identities=13%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             CCCcchHHHHHH-HHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         11 KFMQDMMPKVKW-LRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        11 ~~~~~~~~ki~~-~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      .|.|+.++++.+ ++...+++.+++.|||+++|+.+|+++|+|.+++|+....+
T Consensus       106 n~~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~g~lt~~a  159 (170)
T d1o4ua1         106 NLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQE  159 (170)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTSSC
T ss_pred             CcChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEcCccccCC
Confidence            577888877665 56667889999999999999999999999999999887754

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.70  E-value=3.4e-09  Score=68.28  Aligned_cols=74  Identities=19%  Similarity=0.131  Sum_probs=56.6

Q ss_pred             ccCCCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCccc--HHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHH
Q psy11601          2 TVEPGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNT--IDECAKAGANWIVSGTAVINCPDRIQAISTLKSS   76 (82)
Q Consensus         2 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~n--i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~   76 (82)
                      +++.|..|+-......+.++++|+..++-.+.+.+||++++  ..+. ..++|.+|+|++|++++||.++++++++.
T Consensus       136 ~~~~g~~g~v~~~~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~-~~~ad~iIvGR~I~~a~dP~~aa~~i~~~  211 (212)
T d1km4a_         136 GVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGET-LRFADAIIVGRSIYLADNPAAAAAGIIES  211 (212)
T ss_dssp             HHHHTCCEEECCTTCHHHHHHHHHHHCSSSEEEECCBSTTSBCHHHH-TTTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             HHHhCCccccccccCHHHHhhhhhccCCceeEEcCccccCCCCHHHH-HhhCCEEEECchhccCCCHHHHHHHHHHh
Confidence            45677777776666667777777765445577899998764  3333 25899999999999999999999999875

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=98.59  E-value=9.4e-08  Score=62.02  Aligned_cols=73  Identities=11%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             CCCCCCCcchHHHHHH----HHHhCCCCcEEEEcCCCcccH-HHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKW----LRENYPTLNIEVDGGVGPNTI-DECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~----~~~~~~~~~i~~dGGI~~~ni-~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      ..|+...++..+++.+    +++..+++||...|||+.+|. ..+.+.|+|++.+||++++++||...+.+|.+.+.+
T Consensus       147 Gtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~~  224 (226)
T d1w0ma_         147 GTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE  224 (226)
T ss_dssp             TTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             cCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCCCHHHHHHHHHHHHHh
Confidence            3466666655555443    445567899999999999776 567789999999999999999999999999887764

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.49  E-value=1.7e-07  Score=59.62  Aligned_cols=55  Identities=13%  Similarity=0.169  Sum_probs=43.1

Q ss_pred             HHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         19 KVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      .+.+..... ++|+.++||| +.+++..+.++|||.|++||+|++   |+..+++|.+.+
T Consensus       174 ~~~~~~~~~-~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~~---p~~i~~~~~~~~  229 (230)
T d1yxya1         174 ALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAERFIEAL  229 (230)
T ss_dssp             HHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHHHHHHHT
T ss_pred             HHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhcC---HHHHHHHHHHHh
Confidence            344444443 6999999999 789999999999999999999984   555566666544

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=1.1e-07  Score=61.73  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=43.4

Q ss_pred             CCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         29 TLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        29 ~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .-.+.+..||+++           +..+.+++|||.+|+|++|++++||.++++++++.++
T Consensus       171 ~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~dP~~aa~~i~~~ik  231 (231)
T d1eixa_         171 QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ  231 (231)
T ss_dssp             SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred             CccceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhC
Confidence            3468889999876           4677889999999999999999999999999998763

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=98.45  E-value=3.5e-07  Score=59.29  Aligned_cols=60  Identities=17%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC-----CCCHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN-----CPDRIQAISTLKSS   76 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-----~~d~~~~~~~l~~~   76 (82)
                      .+.++.++...|+++++..|||+.+|+.+|+++|+-.+++||.++.     ..|+.+--+..++.
T Consensus       142 ~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~~  206 (212)
T d1vhca_         142 VKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVREV  206 (212)
T ss_dssp             HHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCeEEecCCCCHHHHHHHHhCCCEEEEEChhhCCHHHHhcCCHHHHHHHHHHH
Confidence            5667888888889999999999999999999999999999999985     34554444444433

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.44  E-value=8.3e-08  Score=60.38  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=38.4

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .|.|+.+++.  ++...+++.+++.|||+++|+.+|++.|+|.+++|+....
T Consensus       107 N~~pe~~~~a--v~~i~~~~~lEaSGgI~~~ni~~ya~~GVD~IS~galt~~  156 (167)
T d1qapa1         107 NFNTDQMREA--VKRVNGQARLEVSGNVTAETLREFAETGVDFISVGALTKH  156 (167)
T ss_dssp             SCCHHHHHHH--HHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHHHE
T ss_pred             CCCHHHHHHH--HHhcCCceEEEEeCCCCHHHHHHHHHcCCCEEECCcccCC
Confidence            3555444432  2334567999999999999999999999999999987554

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.5e-07  Score=60.06  Aligned_cols=59  Identities=12%  Similarity=0.255  Sum_probs=48.7

Q ss_pred             CCCCCCCCCcc----hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601          5 PGFGGQKFMQD----MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus         5 pG~~gq~~~~~----~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      -|+.-.++-|.    ..+.++.++...|+++++..|||+.+|+.+|+++|+..+++||.+|..
T Consensus       127 ~G~~~vKlFPA~~~Gg~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~~  189 (213)
T d1wbha1         127 YGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPA  189 (213)
T ss_dssp             TTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSCH
T ss_pred             CCCCEEEeccchhcChHHHHHHhcCcccCCceeeeCCCCHHHHHHHHhCCCEEEEEChhhCCh
Confidence            35555555553    246678888888999999999999999999999999999999999963

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=3e-07  Score=59.85  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             CCcEEEEcCCCcc-----------cHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         29 TLNIEVDGGVGPN-----------TIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        29 ~~~i~~dGGI~~~-----------ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +-.+.+..||+++           +..+..+.|+|.+|+|++|++++||.++++++++.++.
T Consensus       175 ~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~dP~~aa~~i~~~ie~  236 (237)
T d1dbta_         175 PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEG  236 (237)
T ss_dssp             TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHHT
T ss_pred             cceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHHcC
Confidence            3447789999886           46789999999999999999999999999999998864

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=98.32  E-value=8.2e-07  Score=57.20  Aligned_cols=56  Identities=18%  Similarity=0.315  Sum_probs=47.4

Q ss_pred             HHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      ++.+++..+++||...|||+. +....+.+.|+|++.+||++++++||.+.+++|.+
T Consensus       166 i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~  222 (224)
T d1hg3a_         166 VELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVS  222 (224)
T ss_dssp             HHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             hhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHHh
Confidence            444556677899999999985 66778899999999999999999999998888764

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.28  E-value=6e-07  Score=60.07  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEecccc-CCCCH-HHHHHHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVI-NCPDR-IQAISTLKSSVQK   79 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~-~~~d~-~~~~~~l~~~~~~   79 (82)
                      +.|....|..++-++++++..+++||.+.||| +.+.+.+++.+|||.+-++|+++ +.++. .+-.+.|++.|++
T Consensus       233 ~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~  308 (312)
T d1gtea2         233 VSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYL  308 (312)
T ss_dssp             EESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             ccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHH
Confidence            44555567778889999988778999999999 89999999999999999999865 44553 3444556665543

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.18  E-value=4.3e-06  Score=55.48  Aligned_cols=71  Identities=17%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             CCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHH
Q psy11601          5 PGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSS   76 (82)
Q Consensus         5 pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~   76 (82)
                      .|..|.+  +.++..+.++++|+.. +.|+++=-|| +++.++.+.+.|||++|+||++.+    ..+.++.++.+.+.
T Consensus       175 ~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~~~~~~~  252 (261)
T d1rd5a_         175 NGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEY  252 (261)
T ss_dssp             SCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHH
T ss_pred             cCcccccccchhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555544  5566667788899986 7999999999 569999999999999999999874    34555544444433

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.17  E-value=5.6e-06  Score=54.53  Aligned_cols=51  Identities=14%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         28 PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        28 ~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      .++|+.+|||| ++.......+.|+|++-++|+||+++||....+.+.+...
T Consensus       188 l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~~~Avt  239 (254)
T d1znna1         188 LPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATT  239 (254)
T ss_dssp             CSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred             CCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHH
Confidence            36889999999 5788999999999999999999999999999999887654

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=98.13  E-value=4.7e-06  Score=54.01  Aligned_cols=58  Identities=16%  Similarity=0.249  Sum_probs=47.5

Q ss_pred             CCCCCCCCCcch----HHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC
Q psy11601          5 PGFGGQKFMQDM----MPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         5 pG~~gq~~~~~~----~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      -|+.-.++-|..    .+.++.++...|+++++..|||+.+|+.+|+++|.-..+.||.+|.
T Consensus       129 ~G~~~vKlFPA~~~~g~~~ikal~~p~p~~~fiptGGV~~~n~~~yl~~~~v~avggs~l~~  190 (216)
T d1mxsa_         129 LGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLD  190 (216)
T ss_dssp             TTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSC
T ss_pred             CCCCEEEeccccccccHHHHHHHhcccccCceeccCCCCHHHHHHHHhcCCeEEEEccccCC
Confidence            455555666643    3467777777889999999999999999999999888899999996

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.02  E-value=1.6e-06  Score=57.22  Aligned_cols=58  Identities=21%  Similarity=0.243  Sum_probs=44.2

Q ss_pred             CCCCCCC--CCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601          4 EPGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus         4 ~pG~~gq--~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+|..|.  .+..+..+.++++|+.. +.|+++=-|| ++++++.+.+.+||++|+||++.+
T Consensus       165 ~~GvTG~~~~~~~~~~~~v~~vk~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~  225 (248)
T d1geqa_         165 LYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK  225 (248)
T ss_dssp             CC-------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             cccccccchhhhhhHHHHHHHHhhhc-ccceeeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence            4666653  34556677788899985 6899999999 568899999999999999999875

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=2.8e-05  Score=51.56  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             CCCCCCC--CCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC-----CCCHHHHHHHHHHH
Q psy11601          5 PGFGGQK--FMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN-----CPDRIQAISTLKSS   76 (82)
Q Consensus         5 pG~~gq~--~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~-----~~d~~~~~~~l~~~   76 (82)
                      +|..|.+  +..+.-+.++++|+.. ++|+++=-||+- +.+....+.+||++|+||++.+     .+++++.++++.+.
T Consensus       180 ~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i~~~~~~~~~~~~~i~~~  258 (267)
T d1qopa_         180 SGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSF  258 (267)
T ss_dssp             SSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cccCCcccccchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHhcccCHHHHHHHHHHH
Confidence            5666644  3455667788899886 799999999987 6788888999999999999876     24555555555443


Q ss_pred             H
Q psy11601         77 V   77 (82)
Q Consensus        77 ~   77 (82)
                      +
T Consensus       259 v  259 (267)
T d1qopa_         259 V  259 (267)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.89  E-value=2.6e-05  Score=51.23  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CCCCCCCC-CcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKF-MQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~~-~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      |...||.. +++.   ++.+++. +++|+.+|+||. +..+....+.|+|+|-+.|+|+++.||....+.|+..++
T Consensus       158 PIGsg~Gi~n~~~---l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~  229 (243)
T d1wv2a_         158 LIGSGLGICNPYN---LRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV  229 (243)
T ss_dssp             STTCCCCCSCHHH---HHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             ccccccccccHHH---HHhcccc-CCcceEeecccCCHHHHHHHHHccCCEEEechHhhcCCCHHHHHHHHHHHHH
Confidence            44445444 2433   4445554 479999999995 788999999999999999999999999999999988765

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.81  E-value=6.7e-06  Score=54.81  Aligned_cols=72  Identities=21%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEecccc-CCCCH-HHHHHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVI-NCPDR-IQAISTLKSSVQ   78 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~-~~~d~-~~~~~~l~~~~~   78 (82)
                      ..|.+..|..++.++++++..+..+|...||| +.+.+.+++.+||+.|-++|+++ ..++. .+-.+.|.+.++
T Consensus       220 lSG~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~  294 (312)
T d2b4ga1         220 LGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIMT  294 (312)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHHHHHHHHHHHHHHH
Confidence            44566667788999998887777889999999 59999999999999999999964 44554 334455665554

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.63  E-value=0.00013  Score=47.93  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=51.1

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      ..|+.+++. .++|+.+|+||. +....+..+.|+|.|-+-|+|..+.||....+.|+..++
T Consensus       167 ~~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~  227 (251)
T d1xm3a_         167 LNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE  227 (251)
T ss_dssp             HHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHHHH
Confidence            445555665 479999999995 688999999999999999999999999999898887664

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=97.60  E-value=4.4e-05  Score=50.22  Aligned_cols=60  Identities=22%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             CCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~   67 (82)
                      ..|....|..++.++++++.. ++||.+.|||.- +.+.+++.+|||.|-+||+++..+...
T Consensus       220 ~sG~~i~~~~l~~i~~i~~~~-~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~  280 (311)
T d1ep3a_         220 LSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVC  280 (311)
T ss_dssp             EESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHH
T ss_pred             CCCCcccchhHHHHHHHhhhc-ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHH
Confidence            345555677788899988875 799999999965 688888899999999999998765543

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.58  E-value=3.8e-05  Score=50.75  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             CCCCCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc-CCCCH-HHHHHHHHHHHH
Q psy11601          9 GQKFMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI-NCPDR-IQAISTLKSSVQ   78 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~-~~~d~-~~~~~~l~~~~~   78 (82)
                      |....|..++.++++++. .+++||.+.|||+ .+.+.+++.+|||.|-++|+++ ..++. .+-.++|++.++
T Consensus       221 g~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~  294 (311)
T d1juba_         221 GAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMN  294 (311)
T ss_dssp             SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred             ccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHHHHHHHHH
Confidence            444556678888888765 4679999999995 6889999999999999999975 33443 233344444443

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=9.8e-05  Score=47.48  Aligned_cols=44  Identities=30%  Similarity=0.329  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccC
Q psy11601         18 PKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      +.+..+++...+.|+++=+|| +++.++++. .+||++|+||+|.+
T Consensus       170 ~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~  214 (229)
T d1viza_         170 EAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE  214 (229)
T ss_dssp             HHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred             hhHHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHh
Confidence            334444555557899999999 899999987 69999999999974

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=9.6e-05  Score=48.39  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=36.8

Q ss_pred             CcccHHHHHHcCCCEEEEecccc-CCCCHHHHHHHHHHH-HHHhh
Q psy11601         39 GPNTIDECAKAGANWIVSGTAVI-NCPDRIQAISTLKSS-VQKYL   81 (82)
Q Consensus        39 ~~~ni~~~~~~Gad~vv~gs~i~-~~~d~~~~~~~l~~~-~~~~~   81 (82)
                      ...+..+..++|+|.+|+|++|+ .++||.++++++++. ++.+|
T Consensus       216 q~~tp~eAi~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~~~~~l  260 (267)
T d1dqwa_         216 QYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYL  260 (267)
T ss_dssp             CCBCHHHHHHTTCCEEEECGGGTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHCCCCEEEECChhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999998 478999999999998 67665

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=97.49  E-value=0.00034  Score=45.44  Aligned_cols=61  Identities=21%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCcccHH-------HHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGPNTID-------ECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~~ni~-------~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      .+...++......+|+.+.||-...+..       ...++||.++++|+.||+.+||.+.++.++.++
T Consensus       182 ~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~~~al~~iv  249 (251)
T d1ojxa_         182 PKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELV  249 (251)
T ss_dssp             HHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHHHHHHHHHh
Confidence            3444444443335889999987654433       345779999999999999999999999998765

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.33  E-value=0.00017  Score=46.93  Aligned_cols=51  Identities=25%  Similarity=0.375  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ..++-++++.+.. .+|+.+.||| +.+.++.+..+|++.++++|..|..++.
T Consensus        63 ~~~~~i~~i~~~~-~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~~  114 (252)
T d1h5ya_          63 TFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQL  114 (252)
T ss_dssp             HHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTHH
T ss_pred             cHHHHHHHHHhhc-CCcceeecccchhhhhhhHhhcCCcEEEecccccCCcch
Confidence            3455677777765 6899999999 5699999999999999999998875543

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00012  Score=49.58  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             CCCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccc-cCCCCHH-HHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAV-INCPDRI-QAISTLKSSVQ   78 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i-~~~~d~~-~~~~~l~~~~~   78 (82)
                      |+.|....+-.+..++++++.. .++||...||| +.+.+.+++.+||+.|-++|++ |..+++. +-.+.|.+.++
T Consensus       274 g~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~  350 (367)
T d1d3ga_         274 GLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLK  350 (367)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHHHHHHHHHHHHHHH
Confidence            3455666677777788877653 46999999998 5788999999999999999985 6555543 33355555554

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.31  E-value=5.1e-05  Score=52.61  Aligned_cols=73  Identities=16%  Similarity=0.078  Sum_probs=55.3

Q ss_pred             CCCCCCCcchHHHHHHHHHhC-CCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccc-cCCCCHH-HHHHHHHHHHHH
Q psy11601          7 FGGQKFMQDMMPKVKWLRENY-PTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAV-INCPDRI-QAISTLKSSVQK   79 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~~-~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i-~~~~d~~-~~~~~l~~~~~~   79 (82)
                      ..|.+..|-.++.++++++.. +++||...||| +.+.+.+++.+||+.|=++|++ +..+... +-.+.|.+.+++
T Consensus       319 lSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~  395 (409)
T d1tv5a1         319 VSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQ  395 (409)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhhhHHHhcChHHHHHHHHHHHHHHHH
Confidence            345566677888899988764 56999999999 6799999999999999999985 5555543 333556665553

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00047  Score=44.60  Aligned_cols=56  Identities=21%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCC-CCHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINC-PDRIQAIST   72 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~-~d~~~~~~~   72 (82)
                      .++-++++++.. +.|+.+.||++ .+.+.++...|++++++|++++.. -++.+..+.
T Consensus       183 d~~ll~~i~~~~-~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~~~~~~k~~  240 (253)
T d1thfd_         183 DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY  240 (253)
T ss_dssp             CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHH
T ss_pred             cccccccccccc-cceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcCCCCHHHHHHH
Confidence            345566666654 68999999998 599999999999999999998754 355544333

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.24  E-value=0.00023  Score=46.09  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~~   67 (82)
                      .++-++++.+.. .+|+.+.|||+- ++++.+..+||+.++++|..+..++.-
T Consensus        62 ~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~~i  113 (251)
T d1ka9f_          62 LLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELI  113 (251)
T ss_dssp             HHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHH
T ss_pred             HHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEECchhhhCHHHH
Confidence            344566666654 589999999975 889999999999999999998766543

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00018  Score=46.02  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEecccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      ..+.+.+.++...++|+.+=+|| ++++++++.+ +||++|+||+|.
T Consensus       174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaiv  219 (231)
T d2f6ua1         174 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIY  219 (231)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred             hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHh
Confidence            34556666666557999999999 7899999876 799999999985

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=9.5e-05  Score=47.00  Aligned_cols=41  Identities=22%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             EcCCCcccH---------HHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         35 DGGVGPNTI---------DECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        35 dGGI~~~ni---------~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      .=||+++.-         ++....|||.+|+|++|++++||.++++++++
T Consensus       149 tPGIr~~~~~dDQkr~~t~~ai~~GAd~iVVGR~It~s~dp~~~~~~i~e  198 (198)
T d1vqta1         149 VPGIRMEVKADDQKDVVTLEEMKGIANFAVLGREIYLSENPREKIKRIKE  198 (198)
T ss_dssp             ECCBC---------CCBCHHHHTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             ccccccCCCCCCcccccCHHHHHcCCCEEEECCcccCCCCHHHHHHHHhC
Confidence            357766532         13467899999999999999999999998863

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00011  Score=49.20  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             CCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccc-cCCCC
Q psy11601          7 FGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAV-INCPD   65 (82)
Q Consensus         7 ~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i-~~~~d   65 (82)
                      ..|....+..++.++++++. .+++||...||| +.+.+.+++.+||+.|=++|++ |..+.
T Consensus       266 lSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~  327 (336)
T d1f76a_         266 LSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPP  327 (336)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHH
T ss_pred             cccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChH
Confidence            34566778888889998875 357999999999 6789999999999999999995 54443

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.0004  Score=44.93  Aligned_cols=50  Identities=26%  Similarity=0.336  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      .++-++++.+.. .+|+.+.|||+-. .+..+..+||+-+++||..+..++.
T Consensus        62 ~~~~i~~i~~~~-~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~~  112 (253)
T d1thfd_          62 MLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSL  112 (253)
T ss_dssp             HHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHH
T ss_pred             HHHHHHHHHhcc-CccceeecccccchhhhhHHhcCCCEEEEChHHhhChHH
Confidence            445566666654 6899999999876 8999999999999999999875543

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=97.09  E-value=0.00085  Score=45.34  Aligned_cols=64  Identities=20%  Similarity=0.277  Sum_probs=47.0

Q ss_pred             HHHHHHHHhCCCCcEEEEc-CCCcccHHHHH------HcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         18 PKVKWLRENYPTLNIEVDG-GVGPNTIDECA------KAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dG-GI~~~ni~~~~------~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      +.++.+|+..++.+|.+=| |-...+..++.      +.|++.+++|+.|+.++||.++++++++.+++.+
T Consensus       259 ~e~~~iR~~~~~~~iL~PGIGaQggDq~rv~t~~~a~~~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~e~l  329 (332)
T d2ffca1         259 DEIKKIRELFPDCYILAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVL  329 (332)
T ss_dssp             HHHHHHHHHCTTCCEEECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEeCCcCcCCCCHHHHhCHHhHhhcCceEEEeCccccCCCCHHHHHHHHHHHHHHHH
Confidence            4566677766777776533 22333455443      4589999999999999999999999999888765

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=97.09  E-value=0.00056  Score=45.29  Aligned_cols=73  Identities=19%  Similarity=0.314  Sum_probs=47.7

Q ss_pred             CCCCCC--CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQ--KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq--~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~   78 (82)
                      .|..|.  .+..+..+.++++|+.. ++|+++==||+...-.... .+||++|+||++.+    ..+....++++++.++
T Consensus       177 ~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~-~~ADGvIVGSAiV~~i~e~~~~~~~~~~i~~~l~  254 (271)
T d1ujpa_         177 TGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA-AVADGVVVGSALVRALEEGRSLAPLLQEIRQGLQ  254 (271)
T ss_dssp             ------------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH-TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHHB
T ss_pred             cCccCccccchHHHHHHHHhhhccc-cCCeEEeCCCCCHHHHHHh-CCCCEEEEcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            455555  45667777788898875 7999998899874333333 59999999999874    4577777777777665


Q ss_pred             H
Q psy11601         79 K   79 (82)
Q Consensus        79 ~   79 (82)
                      +
T Consensus       255 ~  255 (271)
T d1ujpa_         255 R  255 (271)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.07  E-value=0.0008  Score=43.56  Aligned_cols=51  Identities=18%  Similarity=0.276  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC-CCCHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN-CPDRIQ   68 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~   68 (82)
                      ++-++++++.. +.|+.+.||++ .+.+..+.+.|++++++|+++.. .-++.+
T Consensus       186 ~~~~~~i~~~~-~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~~~~~~  238 (252)
T d1h5ya_         186 VELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQ  238 (252)
T ss_dssp             HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHH
T ss_pred             HHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCCCCHHH
Confidence            45566666664 58999999998 59999999999999999998754 444443

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00077  Score=44.22  Aligned_cols=56  Identities=13%  Similarity=0.303  Sum_probs=44.8

Q ss_pred             HHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         19 KVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        19 ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +..++....| +..+++-.|| +.+.+..+ .+|+|.|-+|+++..++||.+.+++|+.
T Consensus       191 ~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p~~~l~~l~a  248 (251)
T d1i4na_         191 VLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENPRRFLEEMRA  248 (251)
T ss_dssp             HHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCHHHHHHHHHh
Confidence            3344444443 4678888999 78888776 6899999999999999999999999875

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.0012  Score=42.81  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .++.+.++++..+++||.+||||. ...+-..+.+|||.+-+|++++
T Consensus       221 ~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l  267 (310)
T d1vcfa1         221 TARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL  267 (310)
T ss_dssp             HHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHH
Confidence            456677777777789999999996 4677888899999999999864

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00089  Score=43.97  Aligned_cols=60  Identities=15%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             cchHHHHHHHH-HhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         14 QDMMPKVKWLR-ENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        14 ~~~~~ki~~~~-~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      .+...++.++. +...+..+++-+|| +.+++..+ .+|+|.|.+|+++..++||.+.+++|.
T Consensus       192 ~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~~~~l~~L~  253 (254)
T d1vc4a_         192 LETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELV  253 (254)
T ss_dssp             TTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHhc
Confidence            34445565533 33335778999999 77788766 679999999999999999999888763

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.0015  Score=42.04  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCC-CHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCP-DRI   67 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~-d~~   67 (82)
                      ++-++++.+.. +.|+.+.||++- +.+.++.+.|++++++|++++... ++.
T Consensus       184 ~~l~~~i~~~~-~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~~~~  235 (251)
T d1ka9f_         184 LRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIP  235 (251)
T ss_dssp             HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHH
T ss_pred             hhHHHHHHhhc-ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCCCHH
Confidence            56666766664 689999999984 889999999999999999987543 443

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0011  Score=41.62  Aligned_cols=67  Identities=22%  Similarity=0.366  Sum_probs=50.3

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC---CHHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP---DRIQAISTLKSSVQK   79 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~---d~~~~~~~l~~~~~~   79 (82)
                      +|-.|+.|.-+.++      .. ...|+...||++++|+.+.++.++.++=+.|.+=..+   |+ +.+++|.+.++.
T Consensus       128 ~gGtG~~fdw~~~~------~~-~~~~~~LAGGl~~~Nv~~a~~~~p~gvDvsSGvE~~pG~KD~-~ki~~f~~~vr~  197 (198)
T d1piia1         128 QGGSGQRFDWSLLN------GQ-SLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDA-RLLASVFQTLRA  197 (198)
T ss_dssp             SCCSSCCCCGGGGT------TS-CCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEETTEECH-HHHHHHHHHHHC
T ss_pred             ccccceeeehhhhc------cc-ccceeEEecCCCHHHHHHHHhcCCCEEEeCCcccCCCCCcCH-HHHHHHHHHHhc
Confidence            67788888876543      22 3457999999999999999999999999999985433   54 466666666553

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0013  Score=43.15  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=43.0

Q ss_pred             HHHHHHHHhCC-CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         18 PKVKWLRENYP-TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        18 ~ki~~~~~~~~-~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      ++-.++....| +..+++-.|| +.+++..+ ..|+|.|-+|+++..++||.+.+++|.
T Consensus       196 ~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~dp~~~l~~Ll  253 (254)
T d1piia2         196 NRTRELAPKLGHNVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDDLHAAVRRVL  253 (254)
T ss_dssp             HHHHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHh
Confidence            33344444333 4678889999 66888776 679999999999999999999888763

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.75  E-value=0.0015  Score=41.64  Aligned_cols=55  Identities=18%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHH---cCCCEEEEeccccCCC-CHHHHHHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAK---AGANWIVSGTAVINCP-DRIQAIST   72 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~---~Gad~vv~gs~i~~~~-d~~~~~~~   72 (82)
                      ++-++++++.. +.|+.+.|||+ .+.+..+.+   .|++++++|++++... +++++++.
T Consensus       178 ~~l~~~i~~~~-~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g~i~~~e~~~~  237 (239)
T d1vzwa1         178 LELLKNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEA  237 (239)
T ss_dssp             HHHHHHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             chhhhhhhhcc-CceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCCCCCHHHHHHh
Confidence            45566666664 68999999997 345555554   4999999999987644 77766654

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.0007  Score=43.41  Aligned_cols=42  Identities=17%  Similarity=0.377  Sum_probs=36.2

Q ss_pred             CCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         29 TLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        29 ~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      ..|+.+.||| +.+++..+...|++.++++|.++..++..+..
T Consensus        73 ~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~  115 (241)
T d1qo2a_          73 AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSL  115 (241)
T ss_dssp             GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhccccccceEecCcccccCchhhhhh
Confidence            3699999999 78999999999999999999998877655443

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.73  E-value=0.0014  Score=41.89  Aligned_cols=51  Identities=18%  Similarity=0.396  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccCCCCHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~~~d~~   67 (82)
                      -.+.++++.+.. .+|+.+.|||+ .+.+..+...|++.++++|..+..++..
T Consensus        62 ~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~  113 (239)
T d1vzwa1          62 NRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWV  113 (239)
T ss_dssp             CHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHH
T ss_pred             hHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhhHHhhhccccc
Confidence            345566666665 58999999997 4588899999999999999998655443

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.69  E-value=0.0016  Score=43.58  Aligned_cols=53  Identities=23%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +-.+.+++.. ++||.+.|||+ ++.+.++++.| +|.|.+|+.+...+|+..+++
T Consensus       281 ~~~~~ik~~~-~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~~  335 (340)
T d1djqa1         281 PWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE  335 (340)
T ss_dssp             HHHHHHHTTC-SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHc-CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHHH
Confidence            3345566654 68999999995 99999999999 999999999998888876654

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

Probab=96.63  E-value=0.0034  Score=42.13  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCcc--cHHHHH------HcCCCEEEEeccccCCCCHHHHHHHHHHHHHHhh
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPN--TIDECA------KAGANWIVSGTAVINCPDRIQAISTLKSSVQKYL   81 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~--ni~~~~------~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~~   81 (82)
                      +.++.+|+..|+.++.+ =||..+  ...++.      +.|++.+++|+.|+.++||.++++++++.+++.+
T Consensus       247 ~e~~~ir~~~~~~~iL~-PGIGaQggDq~rv~t~~~a~~~g~~~ivvgR~I~~a~dp~~aa~~~~~ei~~~l  317 (323)
T d2q8za1         247 DEMNYIRTYFPNCYILS-PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAIL  317 (323)
T ss_dssp             HHHHHHHHHSTTCCEEE-CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEc-CCccccCCCHhHhhCHHHHhhcCceEEEEChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            55666777667777755 556543  234433      4588999999999999999999999988877654

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.61  E-value=0.0025  Score=42.00  Aligned_cols=47  Identities=13%  Similarity=0.256  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      .....+.++....++++|.+||||. ...+-..+.+|||.+.+|+.+.
T Consensus       217 ~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l  264 (329)
T d1p0ka_         217 STAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFL  264 (329)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHHHcCCCchhccHHHH
Confidence            3455666666666689999999996 5678888899999999998743

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=96.61  E-value=0.0021  Score=43.60  Aligned_cols=52  Identities=23%  Similarity=0.317  Sum_probs=43.4

Q ss_pred             HHHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         19 KVKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ..+.+++.. +.||.+.||++++...++++.| +|.|.+|+.+...+|+..+++
T Consensus       298 ~~~~ik~~~-~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~~  350 (380)
T d1q45a_         298 LMKSLRMAY-NGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFK  350 (380)
T ss_dssp             HHHHHHHHS-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHhhcc-CCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHCccHHHHHh
Confidence            344566665 6899999999999999999997 999999999998888876654

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.60  E-value=0.0017  Score=44.11  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             HHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         22 WLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        22 ~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      ++++.. +.|+.+.|+++++.+.++++.| +|.|.+|+++...+|+..++++
T Consensus       290 ~i~~~~-~~pvi~~G~i~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~~~  340 (374)
T d1gwja_         290 QMRQRF-KGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRL  340 (374)
T ss_dssp             HHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             HHHHHc-CCCEEEECCcCHHHHHHHHHcCCCcEehhhHHHHHCccHHHHHHc
Confidence            456655 5899999999999999999998 9999999999988898766553

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.0011  Score=44.14  Aligned_cols=66  Identities=14%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             CccCCCCCCCCCC-cchHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHH-cCCCEEEEeccccCCCCHHHH
Q psy11601          1 MTVEPGFGGQKFM-QDMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAK-AGANWIVSGTAVINCPDRIQA   69 (82)
Q Consensus         1 m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~   69 (82)
                      ++||+-...|.+. +..++.|++++   .++|+.+-||| +.+.+..+.+ .|+|+|.+|++++..+-+-..
T Consensus       153 itvH~Rt~~q~~~~~a~~~~i~~~~---~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~  221 (305)
T d1vhna_         153 VFIHTRTVVQSFTGRAEWKALSVLE---KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQ  221 (305)
T ss_dssp             EEEESSCTTTTTSSCCCGGGGGGSC---CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHH
T ss_pred             EEechhhhhhccccchhhhHHHhhh---hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhh
Confidence            4678888877775 33455555443   36899999999 7788888765 799999999998876655443

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0021  Score=42.95  Aligned_cols=51  Identities=12%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             HHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      .+++++.. ++|+.+.|+| +++.+.++++.| +|.|.+|+++...+|+...++
T Consensus       272 ~~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~  324 (330)
T d1ps9a1         272 TRKLKGHV-SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ  324 (330)
T ss_dssp             HHHHTTSC-SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHhhC-CceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHH
Confidence            34455554 6899999998 699999999998 999999999998888876553

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.54  E-value=0.0017  Score=43.58  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             HHHHHHhCCCCcEEEEcCC-CcccHHHHHHcC-CCEEEEeccccCCCCHHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGV-GPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      .+++++.. ++|+.+.|+| +++.+.++++.| +|.|.+|+++...+|+...+++
T Consensus       268 ~~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~  321 (337)
T d1z41a1         268 AEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAK  321 (337)
T ss_dssp             HHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHH
T ss_pred             HHHHHHhc-CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHh
Confidence            34456554 5899999999 599999999998 9999999999988898766543

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=96.50  E-value=0.0012  Score=44.80  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             HHHHHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         20 VKWLRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      ...+++.. +.|+++.||++++.+.+.+..| +|.|.+|+.+...+|+...++
T Consensus       284 ~~~i~~~~-~~~vi~~g~~~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~~  335 (364)
T d1icpa_         284 LVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE  335 (364)
T ss_dssp             SHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHhc-CCCEEEECCCCHHHHHHHHHcCCCceehhHHHHHHCccHHHHHH
Confidence            44556655 5789999999999999888875 999999999988888876654

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=96.40  E-value=0.0038  Score=40.68  Aligned_cols=51  Identities=16%  Similarity=0.087  Sum_probs=41.0

Q ss_pred             CCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc
Q psy11601          9 GQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA   59 (82)
Q Consensus         9 gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~   59 (82)
                      |++--.+.++.|+++.+......|.+-|||+.+|++.+.++|++-|=++..
T Consensus       149 g~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~~~g~~e~H~sa~  199 (247)
T d1twda_         149 QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAG  199 (247)
T ss_dssp             TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECCE
T ss_pred             CCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCCEEEECCC
Confidence            344557788899998876545569999999999999999999998876543

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=96.38  E-value=0.0033  Score=42.36  Aligned_cols=48  Identities=19%  Similarity=0.294  Sum_probs=39.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEEEcCCCc------------ccHHHHHHcCCCEEEEeccccC
Q psy11601         14 QDMMPKVKWLRENYPTLNIEVDGGVGP------------NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~dGGI~~------------~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ...++.|+++.+.. .+|+.+-|||+-            +.+..+..+|||-|+++|+.+.
T Consensus        81 ~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~  140 (323)
T d1jvna1          81 TPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVY  140 (323)
T ss_dssp             CHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             chHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhh
Confidence            34577788877765 699999999987            4478999999999999998764

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0012  Score=42.19  Aligned_cols=50  Identities=14%  Similarity=0.208  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHc------CCCEEEEeccccCCC-CHH
Q psy11601         17 MPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKA------GANWIVSGTAVINCP-DRI   67 (82)
Q Consensus        17 ~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~------Gad~vv~gs~i~~~~-d~~   67 (82)
                      ++-++++++. .++|+.+.||++ .+.+..+.+.      |++++++|++++... ++.
T Consensus       177 ~~l~~~i~~~-~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~g~l~~~  234 (241)
T d1qo2a_         177 FSLTKKIAIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVE  234 (241)
T ss_dssp             HHHHHHHHHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHH
T ss_pred             hhhhhhhhcc-CCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHCCCCCHH
Confidence            4455555554 358999999995 5668887764      489999999997644 444

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=96.14  E-value=0.003  Score=39.48  Aligned_cols=68  Identities=13%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC---CCHHHHHHHHHHHHH
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC---PDRIQAISTLKSSVQ   78 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~   78 (82)
                      .|-.|+.|.-+.+..+.   ..  ..|+...|||+++|+.++++ .+++++=+.|.+=.+   .|+ +.+++|.+.++
T Consensus       132 ~GGtG~~~dw~~~~~~~---~~--~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSgvE~~~G~KD~-~ki~~f~~~vr  203 (205)
T d1nsja_         132 YGGSGKTFDWSLILPYR---DR--FRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDH-DSIKMFIKNAK  203 (205)
T ss_dssp             SSSCCSCCCGGGTGGGG---GG--SSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEEETTEECH-HHHHHHHHHHH
T ss_pred             CCCCCcccchhhcccch---hc--ccceeeecCCCHHHHHHHHHHhCCCEEEEcCcccCCCCccCH-HHHHHHHHHHh
Confidence            46678888877665543   22  23789999999999998775 899999999988432   254 35555555443

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=95.99  E-value=0.0061  Score=41.15  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=41.0

Q ss_pred             HHHhCCCCcEEEEcCCCcccHHHHHHcC-CCEEEEeccccCCCCHHHHHH
Q psy11601         23 LRENYPTLNIEVDGGVGPNTIDECAKAG-ANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        23 ~~~~~~~~~i~~dGGI~~~ni~~~~~~G-ad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +++.. +.|+.+.|+++++.+.++++.| +|.|.+|+++...+|+..+++
T Consensus       288 ~~~~~-~~~vi~~G~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~  336 (363)
T d1vyra_         288 VRERF-HGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  336 (363)
T ss_dssp             HHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHhc-CceEEecCCCCHHHHHHHHHCCCcceehhhHHHHHCccHHHHHH
Confidence            44444 5789999999999999999999 899999999998889876654

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.98  E-value=0.0088  Score=38.88  Aligned_cols=50  Identities=22%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhCC-CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccCCCCH
Q psy11601         17 MPKVKWLRENYP-TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVINCPDR   66 (82)
Q Consensus        17 ~~ki~~~~~~~~-~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~~~d~   66 (82)
                      ++...++....| +..+++-+||+. +.+..+.++|+|.|.+|+++.+++|+
T Consensus       190 ~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~  241 (247)
T d1a53a_         190 KENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK  241 (247)
T ss_dssp             HHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred             hhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence            344455555544 578889999965 55999999999999999999998886

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.95  E-value=0.0068  Score=40.54  Aligned_cols=73  Identities=14%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             CCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc-C-C----CCHHHHHHHHHHHH
Q psy11601          6 GFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI-N-C----PDRIQAISTLKSSV   77 (82)
Q Consensus         6 G~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~-~-~----~d~~~~~~~l~~~~   77 (82)
                      |...-...+..++.+.++++. ..+++|.+||||+- ..+-..+..|||.+.+|+.+. . .    +-..+.++.|++.+
T Consensus       248 ggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~~EL  327 (349)
T d1tb3a1         248 GGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL  327 (349)
T ss_dssp             GGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            333344567888888887764 35699999999975 467778899999999998754 3 2    22344445555444


Q ss_pred             H
Q psy11601         78 Q   78 (82)
Q Consensus        78 ~   78 (82)
                      +
T Consensus       328 ~  328 (349)
T d1tb3a1         328 H  328 (349)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=95.94  E-value=0.011  Score=39.56  Aligned_cols=62  Identities=16%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCCCCcEEEEcCCCcc--cHHHHH------HcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         18 PKVKWLRENYPTLNIEVDGGVGPN--TIDECA------KAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        18 ~ki~~~~~~~~~~~i~~dGGI~~~--ni~~~~------~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +.++.+|+..|+.++.+ =||..+  +..++.      ..|++.+++|+.|+.++||.+.++++++.+.++
T Consensus       249 ~el~~iR~~~~~~~iL~-PGIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~~~  318 (324)
T d2fdsa1         249 EEMKIIRNKFPDSYILS-PGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQI  318 (324)
T ss_dssp             HHHHHHHHHSTTCCEEE-CCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEe-CcccCCCCCHHHHhChhhhhhcCceEEEeChhhccCCCHHHHHHHHHHHHHHH
Confidence            55666677666666643 555443  334443      347889999999999999999999988877664

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=95.81  E-value=0.01  Score=39.51  Aligned_cols=58  Identities=16%  Similarity=0.242  Sum_probs=43.6

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecccc
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      |.|...-.+-+..++-+.++++. .++++|.+||||+- -.+...+..|||.+.+|..+.
T Consensus       253 nhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L  312 (359)
T d1goxa_         253 NHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVV  312 (359)
T ss_dssp             CGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             cccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            34444455667778888877665 35799999999975 467788899999999998744

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.62  E-value=0.019  Score=37.48  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=39.8

Q ss_pred             HHHHHHhCCCCc-EEEEcCCCcccHHH----HHHcCCCEEEEeccccCC----CCH--------HHHHHHHHHHHHHh
Q psy11601         20 VKWLRENYPTLN-IEVDGGVGPNTIDE----CAKAGANWIVSGTAVINC----PDR--------IQAISTLKSSVQKY   80 (82)
Q Consensus        20 i~~~~~~~~~~~-i~~dGGI~~~ni~~----~~~~Gad~vv~gs~i~~~----~d~--------~~~~~~l~~~~~~~   80 (82)
                      .++..... +.| |+.-||.+.+.+.+    ..++||.+|++|+.||+.    +++        ...+++|.+++++.
T Consensus       211 ~~~~~~~~-~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~~~~~~~~~l~~~~~~~l~~l~~i~~~~  287 (291)
T d1to3a_         211 SQRLNGHI-NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGEIVDEM  287 (291)
T ss_dssp             HHHHHHTC-CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcC-CCcEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhCcccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433 456 66678888887765    456999999999999974    333        34455566666554

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.44  E-value=0.0057  Score=40.46  Aligned_cols=56  Identities=16%  Similarity=0.107  Sum_probs=39.6

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecccc
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      +|...-...+...+-+.++.... +.+|.+||||+ .-.+...+..|||.+-+|..+.
T Consensus       252 ~gg~~~~~~~~~~~~l~~i~~~~-~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L  308 (353)
T d1p4ca_         252 HGGRQLDCAISPMEVLAQSVAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL  308 (353)
T ss_dssp             GGGTSCTTCCCGGGTHHHHHHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred             cccccccccccchhcccchhccc-ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHH
Confidence            33333444555666666655543 58999999995 4577788899999999998754

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.30  E-value=0.015  Score=39.74  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+||.+||||. ...+...+.+|||.+.+||.+-+
T Consensus       222 ~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAg  256 (378)
T d1jr1a1         222 GVPVIADGGIQNVGHIAKALALGASTVMMGSLLAA  256 (378)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             CCceecccccccCCceeeEEEeecceeeecceeee
Confidence            58999999996 56788888999999999999876

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=95.23  E-value=0.036  Score=37.05  Aligned_cols=54  Identities=11%  Similarity=0.165  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCCC-cccHHHH-HHcCCCEEEEeccccC-CCCHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGVG-PNTIDEC-AKAGANWIVSGTAVIN-CPDRIQA   69 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI~-~~ni~~~-~~~Gad~vv~gs~i~~-~~d~~~~   69 (82)
                      ..++-++++++.. ++|+.+.||++ .+.+.++ ...+++++++|++++- .-++.+.
T Consensus       251 ~D~el~~~i~~~~-~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~el  307 (323)
T d1jvna1         251 YDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDV  307 (323)
T ss_dssp             CCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHH
T ss_pred             cchhHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHHHH
Confidence            3566777777775 58999999996 5677665 4568999999999764 4555443

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.22  E-value=0.015  Score=39.47  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCCcc-cHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+||.+||||+-. .+...+.+|||.+.+|+.+-+
T Consensus       216 ~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg  250 (368)
T d2cu0a1         216 GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG  250 (368)
T ss_dssp             TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             CCeeEecCCCCcCChhheeeeeccceeeccchhcc
Confidence            4899999999876 899999999999999999876

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=95.20  E-value=0.01  Score=36.80  Aligned_cols=50  Identities=12%  Similarity=0.234  Sum_probs=38.8

Q ss_pred             CCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC---CCHHHHHHHHHHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC---PDRIQAISTLKSSVQK   79 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~---~d~~~~~~~l~~~~~~   79 (82)
                      ..|+...||++++|+.++.+.++.++=+.|.+=.+   .|+ +.+++|.+.++.
T Consensus       146 ~~~~~LAGGl~~~Nv~~~~~~~p~gvDvsSGvE~~~G~KD~-~ki~~f~~~~~~  198 (200)
T d1v5xa_         146 GRRVILAGGIAPENLEEVLALRPYALDLASGVEEAPGVKSA-EKLRALFARLAS  198 (200)
T ss_dssp             TSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEEETTEECH-HHHHHHHHHHHH
T ss_pred             cCceEecCCCCHHHHHHHHhcCCCEEEEcCceECCCCccCH-HHHHHHHHHHHh
Confidence            35899999999999999999999999999998432   354 356666655543

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.015  Score=38.92  Aligned_cols=42  Identities=24%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             HHHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         20 VKWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        20 i~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      ..+.++.. .+||.+||||. ...+...+.+|||.+.+||.+-+
T Consensus       193 ~~~~~~~~-~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~  235 (330)
T d1vrda1         193 CSEVARKY-DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG  235 (330)
T ss_dssp             HHHHHHTT-TCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             HHHHHHhc-CceEEecCCcccCCchheeeeccCceeeecchhee
Confidence            33344433 69999999996 56788888999999999999866

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.96  E-value=0.025  Score=38.38  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             HHHHHhCCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         21 KWLRENYPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+.++.. ..||.+||||+ ...+...+.+|||.+.+|+.+-+
T Consensus       203 ~~~~~~~-~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg  244 (365)
T d1zfja1         203 AAVAREY-GKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG  244 (365)
T ss_dssp             HHHHHHT-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             HHHHHhC-CceEEecCCcCcchhhhhhhhccCCEEEecchhcc
Confidence            3444443 58999999996 46788888999999999999876

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=94.85  E-value=0.026  Score=36.82  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=33.7

Q ss_pred             CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCC
Q psy11601         27 YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINC   63 (82)
Q Consensus        27 ~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~   63 (82)
                      ++++.|.+.+|++++.|.++.+.++|.|-+|+.+...
T Consensus       143 ~~~vkIi~S~glde~~I~~l~~~~~d~fGvGt~Lvt~  179 (270)
T d1ytda1         143 RSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA  179 (270)
T ss_dssp             CTTSEEEEESSCCHHHHHHHHHHTCCEEEECHHHHTC
T ss_pred             CCcceEEECCCCCHHHHHHHHhcCCceEeeccccccC
Confidence            3578999999999999999999999999999988654

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.048  Score=37.04  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=46.5

Q ss_pred             CCCCCCCCCCcchHHHHHHHH---H---hCCCCcEEEEcCCCcc-cHHHHHHcCCCEEEEecccc-C-C----CCHHHHH
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLR---E---NYPTLNIEVDGGVGPN-TIDECAKAGANWIVSGTAVI-N-C----PDRIQAI   70 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~---~---~~~~~~i~~dGGI~~~-ni~~~~~~Gad~vv~gs~i~-~-~----~d~~~~~   70 (82)
                      |+|.....+.+....-+-++.   +   ..++++|.+||||+-- .+...+..|||.+.+|+.+. . .    +...+.+
T Consensus       275 nhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~la~~G~egv~~~l  354 (414)
T d1kbia1         275 NHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAI  354 (414)
T ss_dssp             CTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHH
Confidence            445444444554444444433   2   2357999999999764 67777899999999998754 3 2    2234444


Q ss_pred             HHHHHHHH
Q psy11601         71 STLKSSVQ   78 (82)
Q Consensus        71 ~~l~~~~~   78 (82)
                      +.|++.|+
T Consensus       355 ~~l~~EL~  362 (414)
T d1kbia1         355 EILRDEIE  362 (414)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44544443

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate-nucleotide pyrophosphorylase PF1904
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.61  E-value=0.015  Score=38.02  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC
Q psy11601         27 YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP   64 (82)
Q Consensus        27 ~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~   64 (82)
                      .+++.|++.|||++++|.++.+. +|.|-+|+.+...+
T Consensus       150 ~~~v~IiaSgglde~~I~~l~~~-iD~fGvGt~l~t~~  186 (279)
T d2i14a1         150 YDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASAK  186 (279)
T ss_dssp             CCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTCC
T ss_pred             CCceEEEEeCCCCHHHHHHHHhc-ccEeccccccccCC
Confidence            46789999999999999999765 99999999987643

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=94.17  E-value=0.029  Score=38.21  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCC-cccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVG-PNTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+||.+||||+ ...+...+.+|||.|.+||.+-+
T Consensus       254 ~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg  288 (388)
T d1eepa_         254 NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG  288 (388)
T ss_dssp             SCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHT
T ss_pred             CceEEeccccCcCCceeeeEEeccceeecchhhhc
Confidence            58999999996 45788888999999999999876

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=93.92  E-value=0.023  Score=38.72  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=36.3

Q ss_pred             HHhCCCCcEEEEcCCC-ccc-HHHHHHcCCCEEEEeccccCCCCHHHHHHH
Q psy11601         24 RENYPTLNIEVDGGVG-PNT-IDECAKAGANWIVSGTAVINCPDRIQAIST   72 (82)
Q Consensus        24 ~~~~~~~~i~~dGGI~-~~n-i~~~~~~Gad~vv~gs~i~~~~d~~~~~~~   72 (82)
                      ++.. +.|+.+.|||+ .+. .+.+.+-++|.|.+|+++...+|+..++++
T Consensus       313 k~~~-~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~  362 (399)
T d1oyaa_         313 YSIW-KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEK  362 (399)
T ss_dssp             HHHC-CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHH
T ss_pred             HHHh-CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHHc
Confidence            4443 57999999996 444 556666679999999999988888766543

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=93.85  E-value=0.19  Score=28.25  Aligned_cols=61  Identities=13%  Similarity=0.047  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHhCCCCcE-EEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHHh
Q psy11601         15 DMMPKVKWLRENYPTLNI-EVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i-~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~~   80 (82)
                      +.++-++++++..++.|+ ...|--+.+...+..++||+.++     .++=++.+-.+.+++.+++.
T Consensus        61 ~G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~i~~a~e~l  122 (123)
T d1dbwa_          61 SGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFI-----EKPFEDTVIIEAIERASEHL  122 (123)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHTTC
T ss_pred             cchHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHHhh
Confidence            467777888887777774 45555567788899999998764     45557777777777776643

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=93.79  E-value=0.047  Score=37.16  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      -.....++.++++++.+|+++|.+=+=.+.+....|.++|||++-+|
T Consensus       174 G~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVG  220 (388)
T d1eepa_         174 GHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG  220 (388)
T ss_dssp             CSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred             cchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeec
Confidence            35566788888999888889988888888999999999999999877

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.65  E-value=0.083  Score=33.72  Aligned_cols=54  Identities=17%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             CCCCCCCCCcchHHHHHHHHHhCCCCcEEEEcCCCc-ccHHHHHHcCCCEEEEecc
Q psy11601          5 PGFGGQKFMQDMMPKVKWLRENYPTLNIEVDGGVGP-NTIDECAKAGANWIVSGTA   59 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~   59 (82)
                      .||....-.+....++.+.... .++.|-+.|||+- +.+..++++|++.+-..|+
T Consensus       169 TG~~~~gat~~~~~~l~~~~~~-~~vgIKasGGIrt~~~a~~~i~aGa~rIGtSs~  223 (234)
T d1n7ka_         169 TGVYTKGGDPVTVFRLASLAKP-LGMGVKASGGIRSGIDAVLAVGAGADIIGTSSA  223 (234)
T ss_dssp             CSSSCCCCSHHHHHHHHHHHGG-GTCEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             ccccCCCCCHHHHHHHHHHhcC-CCCcEEeeCCcCCHHHHHHHHHccCceeecchH
Confidence            5665444345555555554433 3589999999987 8999999999998766554

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.63  E-value=0.28  Score=27.36  Aligned_cols=60  Identities=12%  Similarity=0.055  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++..+.+|+. +.+--+.+...+..++||+.+     |.++-++.+-...+++.+++
T Consensus        57 ~G~~~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~l~r  117 (120)
T d1p2fa2          57 SGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDY-----VTKPFNPEILLARVKRFLER  117 (120)
T ss_dssp             BHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHHH
Confidence            4567777888776777744 455556777889999999976     45666777777777777654

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=93.45  E-value=0.03  Score=37.81  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             CCcEEEEcCCCc-ccHHHHHHcCCCEEEEeccccC
Q psy11601         29 TLNIEVDGGVGP-NTIDECAKAGANWIVSGTAVIN   62 (82)
Q Consensus        29 ~~~i~~dGGI~~-~ni~~~~~~Gad~vv~gs~i~~   62 (82)
                      .+||.+||||+. ..+...+.+|||.|.+|+.+-+
T Consensus       220 ~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg  254 (362)
T d1pvna1         220 YIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFAR  254 (362)
T ss_dssp             ECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CCceeeccccCcccceeEEEEEeccceeehhhhhc
Confidence            589999999964 4777888999999999998876

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.34  Score=27.51  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHhCCCCcE-EEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNI-EVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i-~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..++.++ +..+--+.+.+.+..++||+.++     .++-++.+-.+.+++.+.
T Consensus        62 ~G~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~~i~~v~~  121 (138)
T d1a04a2          62 NGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYL-----LKDMEPEDLLKALHQAAA  121 (138)
T ss_dssp             CHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEE-----ETTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHC
Confidence            578888899887777764 45566788888899999998764     455566666666666553

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.32  Score=27.05  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++..+++|+. ..+--+.+...+..++||+.+     +.++=++.+-...++..+++
T Consensus        58 ~G~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~v~~~lrR  118 (119)
T d2pl1a1          58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDY-----VTKPFHIEEVMARMQALMRR  118 (119)
T ss_dssp             CHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHcc
Confidence            3577888888876677754 455556666788999999987     44555777777777766654

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.14  E-value=0.12  Score=32.83  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEeccc
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTAV   60 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~i   60 (82)
                      ..||....-   .++.++.+++. .+++.|=+.|||+ .+.+..++++|++.+-.+|.+
T Consensus       152 STG~~~~ga---t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~~  207 (225)
T d1mzha_         152 STGFAPRGT---TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSGI  207 (225)
T ss_dssp             CCSCSSSCC---CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred             cCCCCCCCC---CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhheecCcHH
Confidence            456665443   44555555554 3468999999995 678889999999987666553

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=93.03  E-value=0.39  Score=27.39  Aligned_cols=58  Identities=10%  Similarity=0.031  Sum_probs=38.7

Q ss_pred             chHHHHHHHHHhCCCCcEEEE-cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.++-++++++..+++||.+. |--+.+...+..++||+-++.     ++-++.+-...+++.+
T Consensus        58 ~G~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~~  116 (140)
T d1qkka_          58 DGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA-----KPFAADRLVQSARRAE  116 (140)
T ss_dssp             CHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE-----SSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeec-----CCCCHHHHHHHHHHHH
Confidence            467778888888778885555 445677888999999998765     4434444444444433

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.90  E-value=0.098  Score=34.78  Aligned_cols=46  Identities=20%  Similarity=0.411  Sum_probs=38.2

Q ss_pred             CCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         12 FMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        12 ~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      ......+.++++++..+++++.+=.-.+.+....+.++|||.+.+|
T Consensus       122 ~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VG  167 (330)
T d1vrda1         122 HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVG  167 (330)
T ss_dssp             SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             CchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeec
Confidence            3455667788888888888888877888999999999999999886

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.52  E-value=0.096  Score=35.18  Aligned_cols=36  Identities=19%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             CCCCcEEEEcCCCcccHHHHHHcC--CCEEEEeccccC
Q psy11601         27 YPTLNIEVDGGVGPNTIDECAKAG--ANWIVSGTAVIN   62 (82)
Q Consensus        27 ~~~~~i~~dGGI~~~ni~~~~~~G--ad~vv~gs~i~~   62 (82)
                      ++++.|.+.||++++.|.++.+.|  +|.|-+|+.+.+
T Consensus       144 ~~~v~Ii~Sdglde~~I~~l~~~~~~id~FGvGt~L~~  181 (345)
T d2f7fa1         144 FTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLIT  181 (345)
T ss_dssp             CTTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred             CCceEEEEeCCCCHHHHHHHHHcCCceeEeecCcceee
Confidence            457889999999999999999876  489999999875

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.16  Score=31.88  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEec
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs   58 (82)
                      .|..++-|+++++.+|++. ...|. .+.+.++.+.++||+++|+=.
T Consensus        50 tp~a~~~I~~l~~~~p~~~-vGaGTV~~~~~~~~a~~aGa~FivSP~   95 (213)
T d1wbha1          50 TECAVDAIRAIAKEVPEAI-VGAGTVLNPQQLAEVTEAGAQFAISPG   95 (213)
T ss_dssp             STTHHHHHHHHHHHCTTSE-EEEESCCSHHHHHHHHHHTCSCEEESS
T ss_pred             ChhHHHHHHHHHHHCCCCe-eeccccccHHHHHHHHHCCCcEEECCC
Confidence            4778999999999888864 55555 478899999999999988654

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=91.95  E-value=0.51  Score=26.09  Aligned_cols=56  Identities=18%  Similarity=0.149  Sum_probs=38.6

Q ss_pred             cchHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHH
Q psy11601         14 QDMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLK   74 (82)
Q Consensus        14 ~~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~   74 (82)
                      .+.++-++++++..+++|+.+ .|--+.+...+..++||+.+     +.++-++.+-.+.++
T Consensus        59 ~~G~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~l~  115 (118)
T d1u0sy_          59 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDF-----IVKPFQPSRVVEALN  115 (118)
T ss_dssp             GCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEE-----EESSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHH
Confidence            357788888888877888555 55556677888999999987     445545554444443

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.12  Score=33.13  Aligned_cols=55  Identities=11%  Similarity=0.098  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCcchHHHHHHHHH---hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccc
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLRE---NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAV   60 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~---~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i   60 (82)
                      .=|+.||...|+..+.++++.+   .. +.++-+-.+ +++.+..+.+.|++.++.|+..
T Consensus       180 slG~~g~~~~p~v~~ai~~v~~~~~~~-gk~~g~~~~-~~~~~~~~~~~G~~~i~~g~D~  237 (253)
T d1dxea_         180 ALGHLGNASHPDVQKAIQHIFNRASAH-GKPSGILAP-VEADARRYLEWGATFVAVGSDL  237 (253)
T ss_dssp             HTTCTTCTTSHHHHHHHHHHHHHHHHT-TCCEEEECC-SHHHHHHHHHTTCCEEEEEEHH
T ss_pred             hccCCCCCCChhHHHHHHHHHHHHHHc-CCCeEEecC-CHHHHHHHHHcCCCEEEehHHH
Confidence            3467788888877777776543   33 455555444 8999999999999999999764

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.81  E-value=0.14  Score=34.54  Aligned_cols=47  Identities=13%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .......+.++++++..|+.+|.+=.=.+.+....|..+|||++-+|
T Consensus       130 G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVG  176 (365)
T d1zfja1         130 GHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVG  176 (365)
T ss_dssp             TTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             ccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEee
Confidence            34556777888888888888776544458889999999999999888

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=91.77  E-value=0.045  Score=36.13  Aligned_cols=71  Identities=8%  Similarity=0.059  Sum_probs=48.3

Q ss_pred             CCCCCCcchHHHHHHHH---HhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC-CCCHHHHHHHHHHHHHHh
Q psy11601          8 GGQKFMQDMMPKVKWLR---ENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN-CPDRIQAISTLKSSVQKY   80 (82)
Q Consensus         8 ~gq~~~~~~~~ki~~~~---~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~-~~d~~~~~~~l~~~~~~~   80 (82)
                      .|+...|+..+-++++.   +.. ..++. .+..+++.++.+.+.|++.+++++.+.- ..-..+.++++|...+|.
T Consensus       223 ~g~~~~p~v~~ai~~i~~a~k~~-Gk~~g-~~~~~~~~~~~~~~~G~~~i~~g~D~~~l~~~~~~~l~~~R~~~~~~  297 (299)
T d1izca_         223 LSGVPHPTFVEAMTKFSTAAQRN-GVPIF-GGALSVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAKQF  297 (299)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHT-TCCEE-EECSSGGGHHHHHHTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cccccHHHHHHHHHHHHHHHHHc-CCcEE-eccCCHHHHHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            36667777766666543   333 35543 4556999999999999999999987532 334556777777766553

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.59  E-value=0.22  Score=32.09  Aligned_cols=52  Identities=17%  Similarity=0.239  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEec
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGT   58 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs   58 (82)
                      ..||+...-   ..+.++.+++. .+++.|-+.|||+ .+.+.+++.+|++.+-..|
T Consensus       185 STGf~~~ga---t~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~riGtSs  238 (251)
T d1o0ya_         185 STGFGTGGA---TAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSS  238 (251)
T ss_dssp             CCSSSSCCC---CHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             cCCCCCCCc---CHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence            356654443   44445555543 3568999999995 6888899999999875444

>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=91.39  E-value=0.16  Score=30.52  Aligned_cols=52  Identities=10%  Similarity=-0.144  Sum_probs=34.4

Q ss_pred             HHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHH
Q psy11601         21 KWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSV   77 (82)
Q Consensus        21 ~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~   77 (82)
                      +.+++...+..+.+-|++..++...+.++|+|.++     +...|..+.++++.+.+
T Consensus       108 ~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i-----~~G~d~~~~l~~l~~~l  159 (163)
T d7reqb2         108 KALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRL-----FMGMDVVDTLSSTLDIL  159 (163)
T ss_dssp             HHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEE-----CTTCCHHHHHHHHHHHT
T ss_pred             HHHHhcccceeEEEecCCCcccHHHHHhCCCCeEe-----cCCCcHHHHHHHHHHHh
Confidence            34555554444444444677889999999999774     43457777777776653

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.97  E-value=0.34  Score=27.01  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcCC-CcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGGV-GPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGGI-~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++..+++|+.+..|- +.+...+..++||+.+     +.++-++.+-...+++.+++
T Consensus        61 ~G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~eL~~~i~~~l~~  121 (123)
T d1krwa_          61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY-----LPKPFDIDEAVALVERAISH  121 (123)
T ss_dssp             TTHHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEEE-----CSSCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCeE-----EeCcCCHHHHHHHHHHHHHc
Confidence            456777888887778886665555 4466778889998754     55555666666667666654

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.93  E-value=0.74  Score=26.01  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             chHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~   56 (82)
                      +.++-++++++..+++||.+ .|--+.++..+..++||+.++.
T Consensus        58 ~G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~  100 (137)
T d1ny5a1          58 NGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT  100 (137)
T ss_dssp             BHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence            45677777887777888554 5556678888999999998866

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.92  E-value=0.28  Score=27.40  Aligned_cols=60  Identities=13%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHhCCCCcEE-EEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIE-VDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~-~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++..+++||. ..|--+.++..+..++||+.+     |.++=++.+-+..+++.+++
T Consensus        59 ~G~el~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~l~r  119 (121)
T d1ys7a2          59 DGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDY-----LVKPFVLAELVARVKALLRR  119 (121)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHHc
Confidence            4677788888876777854 466667777888999999987     44555777666777666653

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=90.88  E-value=0.34  Score=30.28  Aligned_cols=53  Identities=23%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHh-CCCCcEEEEcCCC-cccHHHHHHcCCCEEEEecc
Q psy11601          4 EPGFGGQKFMQDMMPKVKWLREN-YPTLNIEVDGGVG-PNTIDECAKAGANWIVSGTA   59 (82)
Q Consensus         4 ~pG~~gq~~~~~~~~ki~~~~~~-~~~~~i~~dGGI~-~~ni~~~~~~Gad~vv~gs~   59 (82)
                      .+||....-   ..+.++.+++. .+++.|-+.|||+ .+.+..++++|++.+-..|+
T Consensus       152 STG~~~~ga---t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~riGtSs~  206 (211)
T d1ub3a_         152 STGFGPRGA---SLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSG  206 (211)
T ss_dssp             CCSSSSCCC---CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             cCCCCCCCC---CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence            356655443   44555555554 2468999999986 57888999999998876554

>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TTHA0625-like
domain: Hypothetical protein TTHA0625
species: Thermus thermophilus [TaxId: 274]

Probab=90.80  E-value=0.12  Score=33.44  Aligned_cols=34  Identities=12%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         37 GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        37 GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      ||+++...++.++|+|.+-+|--+|...++.+-+
T Consensus        44 Git~k~~~~L~~~GVDvIT~GNH~wdkkei~~~i   77 (252)
T d2z06a1          44 GLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALL   77 (252)
T ss_dssp             SCCHHHHHHHHHHTCCEEECCTTTTSCTTHHHHH
T ss_pred             CCCHHHHHHHHHhCCCEEEcCcccccchhhhhhh
Confidence            8999999999999999999999999888776543

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.74  E-value=0.22  Score=33.61  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .......+.++++++..++.++.+=.=.+.+....|.++|||.|.+|
T Consensus       142 g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVG  188 (378)
T d1jr1a1         142 GNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVG  188 (378)
T ss_dssp             CCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             ccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeec
Confidence            34556677788888887777776555567778889999999999888

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=90.72  E-value=0.18  Score=31.74  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|..++-|+.+++.+|++.+=+=.=.+.+.++.+.++||+++|+=
T Consensus        52 ~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP   96 (216)
T d1mxsa_          52 SQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP   96 (216)
T ss_dssp             STHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred             ChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECC
Confidence            578889999999988886544444458899999999999988754

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=90.36  E-value=0.78  Score=25.32  Aligned_cols=56  Identities=14%  Similarity=0.036  Sum_probs=38.1

Q ss_pred             chHHHHHHHHHhCCCCcEEEEcC-CCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDGG-VGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKS   75 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dGG-I~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~   75 (82)
                      +.++-++++++..+++|+.+.-| -+.+...+..++||+.++     .++=++.+-...+++
T Consensus        59 ~G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~v~~  115 (119)
T d1peya_          59 DGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHF-----AKPFDIDEIRDAVKK  115 (119)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHH
Confidence            35677788888777788666544 566888899999999874     455565544444443

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=90.25  E-value=0.3  Score=30.57  Aligned_cols=45  Identities=18%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             CcchHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEe
Q psy11601         13 MQDMMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSG   57 (82)
Q Consensus        13 ~~~~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~g   57 (82)
                      .|..++-|+++++.+|++.+=+=.=.+.+.++.+.++||+++|+=
T Consensus        49 ~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP   93 (212)
T d1vhca_          49 SEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP   93 (212)
T ss_dssp             STTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred             ChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC
Confidence            477888899999888875444444457899999999999998754

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.15  E-value=0.37  Score=31.82  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=40.9

Q ss_pred             CcEEEEcCCCcccHHHHHH-cC-CCEE-EEeccccCCCC-HHHHHHHHHHHHHH
Q psy11601         30 LNIEVDGGVGPNTIDECAK-AG-ANWI-VSGTAVINCPD-RIQAISTLKSSVQK   79 (82)
Q Consensus        30 ~~i~~dGGI~~~ni~~~~~-~G-ad~v-v~gs~i~~~~d-~~~~~~~l~~~~~~   79 (82)
                      +-=+..||+++..++++.+ .| .|++ ..|..|++.++ +++-++.+|+.++.
T Consensus       226 ~~Pv~sgG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~AGa~A~rqA~eA  279 (320)
T d5ruba1         226 CTPIISGGMNALRMPGFFENLGNANVILTAGGGAFGHIDGPVAGARSLRQAWQA  279 (320)
T ss_dssp             CEEEEEECCCTTTHHHHHHHHSCCCCEEEECTTTTCCTTCHHHHHHHHHHHHHH
T ss_pred             CceecCCCCcHhHhHHHHHHhCCCcEEEEcCcccccCCCchHHhHHHHHHHHHH
Confidence            3458899999999998877 89 6885 57899999655 88888999988763

>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Putative phosphatase DR1281
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.01  E-value=0.12  Score=33.50  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             CCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         37 GVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        37 GI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      ||+++...++.++|+|.+-+|--+|...++.+.+
T Consensus        44 Git~~~~~~l~~~GvDviT~GNH~wdkkei~~~i   77 (255)
T d1t70a_          44 GMHRDAARGALEAGAGCLTLGNHAWHHKDIYPML   77 (255)
T ss_dssp             SCCHHHHHHHHHHTCSEEECCTTTTSSTTHHHHH
T ss_pred             CCCHHHHHHHHHcCCcEEEcCchhhcchhHHHHH
Confidence            7999999999999999999999999888776554

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.69  E-value=0.33  Score=31.27  Aligned_cols=47  Identities=13%  Similarity=0.188  Sum_probs=34.0

Q ss_pred             CCCcchHHHHHHHHHhCCCCcEEE---EcCCCcccHHHHHHcCCCEEEEec
Q psy11601         11 KFMQDMMPKVKWLRENYPTLNIEV---DGGVGPNTIDECAKAGANWIVSGT   58 (82)
Q Consensus        11 ~~~~~~~~ki~~~~~~~~~~~i~~---dGGI~~~ni~~~~~~Gad~vv~gs   58 (82)
                      ......++.++++++..+ .|+.+   -.+.+.+.+..+.++|||.++++.
T Consensus       141 ~~~~~~~~~i~~i~~~~~-~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~  190 (329)
T d1p0ka_         141 RSFSGALKRIEQICSRVS-VPVIVKEVGFGMSKASAGKLYEAGAAAVDIGG  190 (329)
T ss_dssp             --CTTHHHHHHHHHHHCS-SCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC
T ss_pred             ccccchHHHHHHHHHHcC-CCcEEEecCCcchHHHHHHHHhcCCCEEEEcC
Confidence            344567788999888753 44443   344788999999999999999863

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.24  Score=31.74  Aligned_cols=43  Identities=14%  Similarity=0.151  Sum_probs=35.0

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHHHHHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +++|.==|+++++|+.++.. .++|++-+|++-..+++...-++
T Consensus       204 ~v~iLYGGSV~~~N~~~i~~~~~vdG~LVGgASl~~~~F~~Ii~  247 (255)
T d1trea_         204 QVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVK  247 (255)
T ss_dssp             HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGCHHHHHHHHH
T ss_pred             CccEEecCCcCHhHHHHHhcCCCCCEEEechhhcCHHHHHHHHH
Confidence            47899999999999998875 79999999999887665444443

>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Entamoeba histolytica [TaxId: 5759]

Probab=89.21  E-value=0.1  Score=33.65  Aligned_cols=58  Identities=26%  Similarity=0.381  Sum_probs=41.8

Q ss_pred             CCCCCcchHHHHHH-HHH----hCC-----CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCH
Q psy11601          9 GQKFMQDMMPKVKW-LRE----NYP-----TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDR   66 (82)
Q Consensus         9 gq~~~~~~~~ki~~-~~~----~~~-----~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~   66 (82)
                      |+.-.|+.++++.+ +|+    ...     +++|.==|.++++|+.++.. .++|++-+|++=..+++.
T Consensus       181 G~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL~~~~F  249 (260)
T d1m6ja_         181 GKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKF  249 (260)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHhhcchhhcCCCcEEEcCCCCHhHHHHHhCCCCCCeEEechHhcCHHHH
Confidence            55555655555444 332    222     47899999999999999885 799999999998765443

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.09  E-value=0.26  Score=31.48  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHH
Q psy11601         28 PTLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        28 ~~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~   67 (82)
                      .+++|.==|.++++|+.++.. .++|++-+|++=+.+++..
T Consensus       203 ~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~ASl~~~~F~  243 (251)
T d2btma_         203 EAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFL  243 (251)
T ss_dssp             TTSEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSSHHHHH
T ss_pred             ccCcEEeeCCCCHhHHHHHhcCCCCCEEEechHhCCHHHHH
Confidence            358999999999999999987 6789999999988655433

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.51  E-value=1.9  Score=27.81  Aligned_cols=51  Identities=16%  Similarity=0.279  Sum_probs=40.1

Q ss_pred             CCcEEEEcCCCcccHHHHH-HcC-CCEEE-EeccccCCC-CHHHHHHHHHHHHHHh
Q psy11601         29 TLNIEVDGGVGPNTIDECA-KAG-ANWIV-SGTAVINCP-DRIQAISTLKSSVQKY   80 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~-~~G-ad~vv-~gs~i~~~~-d~~~~~~~l~~~~~~~   80 (82)
                      -+|+ ..||+++..++.+. ..| .|.+. +|..|++.+ -+++-++.+++.++..
T Consensus       207 ~~Pv-~sGG~~~~~vp~~~~~~G~~Dvil~aGGGi~gHP~G~~aGa~A~rqA~ea~  261 (283)
T d1ykwa1         207 CLPV-PGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAI  261 (283)
T ss_dssp             CEEE-EECSBCTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHHHHHHHHHHH
T ss_pred             ceee-ccCCcchhhhHHHHHhcCCceEEEecCcccccCCCchHHHHHHHHHHHHHH
Confidence            3555 79999999998776 478 57776 568899965 5888899999988743

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.46  E-value=0.62  Score=29.00  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=41.8

Q ss_pred             hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHHh
Q psy11601         26 NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQKY   80 (82)
Q Consensus        26 ~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~~   80 (82)
                      ..++..|.+..=-+.+++.++..+|+|.+-+.-.++.    .+-..+.++.|.+.+++.
T Consensus       156 ~~~~tkil~AS~r~~~~v~~a~~~G~d~iTip~~v~~~l~~~~~t~~~v~~F~~D~~k~  214 (218)
T d1vpxa_         156 YGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKKY  214 (218)
T ss_dssp             HTCSCEEEEBSCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcccceeeeeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHCCCccHHHHHHHHHHHHHH
Confidence            3567888888777888888888999999988877764    333457777777776664

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.02  E-value=1.4  Score=24.10  Aligned_cols=60  Identities=12%  Similarity=0.005  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHhCCCCc-EEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLN-IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-+++++...+..| +.+.+--+.++..+..++||+.+     |.++=++.+-...+++.+++
T Consensus        60 ~G~~~~~~~r~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~y-----l~KP~~~~~L~~~i~~~lrR  120 (121)
T d1mvoa_          60 DGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDY-----MTKPFSPREVNARVKAILRR  120 (121)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEE-----EESSCCHHHHHHHHHHHHHT
T ss_pred             CCchhhhhhhccCCCCEEEEEEeeCCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHcc
Confidence            35666777777765556 45566677788889999999875     55666777777777776654

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.00  E-value=1.3  Score=24.39  Aligned_cols=60  Identities=13%  Similarity=0.011  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHhCCCCcEEEE-cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLNIEVD-GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~d-GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++..+..|+.+. |--+.+...+..++||+.++     .++=++.+-...+++.+++
T Consensus        59 ~g~~~~~~lr~~~~~~piI~lt~~~~~~~~~~~~~~Ga~~yl-----~KP~~~~~L~~~i~~~l~r  119 (122)
T d1kgsa2          59 DGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYL-----PKPFDLRELIARVRALIRR  119 (122)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHcCCceee-----cCCCCHHHHHHHHHHHHHH
Confidence            456667777776666776554 44456667788899998764     4555777777777776654

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.65  E-value=1.4  Score=27.78  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~   67 (82)
                      +++|.==|.++++|+.++.+ .++|++-+|++=.. ++..
T Consensus       201 ~i~ilYGGSV~~~N~~~i~~~~~idG~LVG~ASL~-~~F~  239 (246)
T d1o5xa_         201 QIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFV  239 (246)
T ss_dssp             HSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS-TTHH
T ss_pred             cccEEEeCCCCHhHHHHHhcCCCCCEEEeecccCC-HHHH
Confidence            58999999999999999886 79999999988664 4544

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=86.49  E-value=0.6  Score=29.63  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~   67 (82)
                      +++|.==|.++++|+.++.. .++|++-+|++=..+ |..
T Consensus       204 ~i~ilYGGSV~~~N~~~i~~~~~vdG~LVG~ASl~~-~F~  242 (249)
T d1n55a_         204 KLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP-EFR  242 (249)
T ss_dssp             HCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGST-THH
T ss_pred             cccEEEcCCCCHhHHHHHhcCCCCCeEEeehhhcCH-HHH
Confidence            48999999999999998886 799999999887764 443

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=86.39  E-value=2.1  Score=25.49  Aligned_cols=53  Identities=21%  Similarity=0.151  Sum_probs=34.1

Q ss_pred             HHHHh-CCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccCCC-CHHHHHHHHHHHHHHh
Q psy11601         22 WLREN-YPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVINCP-DRIQAISTLKSSVQKY   80 (82)
Q Consensus        22 ~~~~~-~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~-d~~~~~~~l~~~~~~~   80 (82)
                      ++++. .++++|.+=|-|-.+....+.+.|++.      +|.+. .+.+.+.++.+.+++.
T Consensus       111 ~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~------iF~pgt~~~e~a~~~~~~~~~~  165 (168)
T d7reqa2         111 ELDKLGRPDILITVGGVIPEQDFDELRKDGAVE------IYTPGTVIPESAISLVKKLRAS  165 (168)
T ss_dssp             HHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEE------EECTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCE------EECcCCCHHHHHHHHHHHHHHH
Confidence            35554 345666655557889999999999764      46642 4556666666665544

>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=86.37  E-value=0.15  Score=33.54  Aligned_cols=51  Identities=16%  Similarity=0.262  Sum_probs=37.1

Q ss_pred             HHHHHHHhCCCCcEEEE--------cCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHH
Q psy11601         19 KVKWLRENYPTLNIEVD--------GGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAI   70 (82)
Q Consensus        19 ki~~~~~~~~~~~i~~d--------GGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~   70 (82)
                      .|.++++.+ ++.+++.        -||+++...++.++|+|.+-+|--+|...++...+
T Consensus        25 ~Lp~Lr~~~-~iDfVIaNgENaa~G~Git~k~~~eL~~~GvDvIT~GNH~wd~kei~~~i   83 (281)
T d1t71a_          25 NLAQLKSKY-QADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVV   83 (281)
T ss_dssp             THHHHHHHH-TCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEECCTTTTCCGGGHHHH
T ss_pred             HhHHHHHHh-CCCEEEECCccCCCCcCCCHHHHHHHHHhCCcEEEcCchhhhchhhHHHH
Confidence            355555543 3344443        38999999999999999999999999877655443

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.27  E-value=1.3  Score=28.97  Aligned_cols=62  Identities=16%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHhCCCCcEEEEcCCCcccHHHHHHcCCCEEEEecc----ccCCCCHHHHHHHHHHHHH
Q psy11601         16 MMPKVKWLRENYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTA----VINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        16 ~~~ki~~~~~~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~----i~~~~d~~~~~~~l~~~~~   78 (82)
                      .++.++++++.. +.|+.+-|-.+.++...+.++|+|.+.+...    +-..+.+.+.+.++.+...
T Consensus       205 ~~~~i~~l~~~~-~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~  270 (349)
T d1tb3a1         205 CWNDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVK  270 (349)
T ss_dssp             CHHHHHHHHTTC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc-CCCcccchhhhhHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccC
Confidence            457788888875 5899999999999999999999999998833    3335667777777766543

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=1.1  Score=27.85  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             hCCCCcEEEEcCCCcccHHHHHHcCCCEEEEeccccC----CCCHHHHHHHHHHHHHH
Q psy11601         26 NYPTLNIEVDGGVGPNTIDECAKAGANWIVSGTAVIN----CPDRIQAISTLKSSVQK   79 (82)
Q Consensus        26 ~~~~~~i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~----~~d~~~~~~~l~~~~~~   79 (82)
                      ..+++.|.+..=-+.+++.++..+|+|.+-+.-.++.    .+-..+.++.|.+-+++
T Consensus       156 ~~~~tkIl~AS~R~~~~v~~~~~~G~d~iTip~~v~~~l~~~~~t~~~~~~F~~d~~~  213 (220)
T d1l6wa_         156 HAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQG  213 (220)
T ss_dssp             HCTTCEEEEBCCSSHHHHHHHHHTTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEeehhcCCHHHHHHHHHcCCCEEEcCHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            3456778776556677888888999999999877665    33345667777766654

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.00  E-value=1.6  Score=23.77  Aligned_cols=59  Identities=19%  Similarity=0.092  Sum_probs=39.7

Q ss_pred             chHHHHHHHHHhCCCCc-EEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLN-IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++.++... +.| |...|--+.++.....++||+.++     .++=++.+-...+++.+++
T Consensus        59 ~g~~~~~~~~~~~-~~piI~lt~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~lrR  118 (120)
T d1zgza1          59 NGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYV-----TKPLELRELVVRVKNLLWR  118 (120)
T ss_dssp             CHHHHHHHHHTTC-CCEEEEEESSCCHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhccC-CCeEEEEEccCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHcc
Confidence            3456666666553 455 455666677778889999999774     4555777777777766654

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.81  E-value=1.9  Score=27.18  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCCcccHHHHHHc-CCCEEEEeccccCCCCHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAKA-GANWIVSGTAVINCPDRI   67 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~~-Gad~vv~gs~i~~~~d~~   67 (82)
                      +++|.==|.++++|+.++... ++|++-+|++=..+ +..
T Consensus       204 ~~~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASl~~-eF~  242 (249)
T d1kv5a_         204 ELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKP-EFV  242 (249)
T ss_dssp             HCCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGST-THH
T ss_pred             CCcEEEcCCCCHhHHHHHhcCCCCCEEEechHhcCH-HHH
Confidence            488999999999999999876 89999999887764 443

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=1.7  Score=23.76  Aligned_cols=59  Identities=14%  Similarity=0.061  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHhCCCCc-EEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENYPTLN-IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++.. +.| |...+.-+.++..+..+.||+.+     |.++=++.+-...++..+++
T Consensus        58 ~G~e~~~~ir~~~-~~piI~lt~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~lrr  117 (119)
T d1zh2a1          58 DGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDY-----LSKPFGIGELQARLRVALRR  117 (119)
T ss_dssp             EHHHHHHHHHTTC-CCCEEEEESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHhcc-CCcEEEEeccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHhh
Confidence            3566677777654 445 56667777778889999999876     44555777777777777665

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=1.9  Score=24.09  Aligned_cols=41  Identities=15%  Similarity=0.128  Sum_probs=29.6

Q ss_pred             chHHHHHHHHHhCCCCcEEE-EcCCCcccHHHHHHcCCCEEE
Q psy11601         15 DMMPKVKWLRENYPTLNIEV-DGGVGPNTIDECAKAGANWIV   55 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv   55 (82)
                      +.++-++++++..++.||.+ .|--..++..+..++|++.++
T Consensus        66 dG~el~~~ir~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l  107 (133)
T d2ayxa1          66 DGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCL  107 (133)
T ss_dssp             CCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEE
T ss_pred             CHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHcCCCEEE
Confidence            45666677776656677654 455677888899999998763

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=84.74  E-value=1.9  Score=23.55  Aligned_cols=60  Identities=8%  Similarity=0.094  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHh--CCCCcEEE-EcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLREN--YPTLNIEV-DGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~--~~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++++.  .+++|+.+ .|--+.++..+..++||+.++     .++=++.+-...+++.+++
T Consensus        58 ~G~~l~~~lr~~~~~~~~pvi~lt~~~~~~~~~~~~~~G~~d~l-----~KP~~~~~L~~~v~~~lrR  120 (121)
T d1zesa1          58 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYI-----TKPFSPKELVARIKAVMRR  120 (121)
T ss_dssp             CHHHHHHHHHHSTTTTTSCEEEEESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCccCCCCeEEEEECCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHcC
Confidence            456667777763  34577555 666677888899999999874     4555777777777776654

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=84.50  E-value=0.56  Score=30.06  Aligned_cols=49  Identities=14%  Similarity=0.159  Sum_probs=34.2

Q ss_pred             CCCCCCCCCcchHHHHHHH-HHh-------CCCCcEEEEcCCC-cccHHHHHHcCCCE
Q psy11601          5 PGFGGQKFMQDMMPKVKWL-REN-------YPTLNIEVDGGVG-PNTIDECAKAGANW   53 (82)
Q Consensus         5 pG~~gq~~~~~~~~ki~~~-~~~-------~~~~~i~~dGGI~-~~ni~~~~~~Gad~   53 (82)
                      .||.+..-.++...-++++ +++       .+++.|=+.|||+ .+.+..++++|++.
T Consensus       172 TG~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~  229 (256)
T d2a4aa1         172 TGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRF  229 (256)
T ss_dssp             CSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHh
Confidence            5666555556666555542 322       3578999999995 58888999988884

>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Vibrio marinus [TaxId: 90736]

Probab=84.05  E-value=0.8  Score=29.12  Aligned_cols=39  Identities=15%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCCCCHH
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINCPDRI   67 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~~d~~   67 (82)
                      +++|.==|.++++|+.++.. -++|++-+|++-...++..
T Consensus       205 ~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~ASl~~~~F~  244 (255)
T d1aw1a_         205 NVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFA  244 (255)
T ss_dssp             HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSHHHHH
T ss_pred             cceEEEcCCCCHhHHHHHhcCCCCCeEEechHhcCHHHHH
Confidence            46777779999999999876 7899999999988654443

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=83.45  E-value=2.1  Score=24.23  Aligned_cols=42  Identities=7%  Similarity=0.083  Sum_probs=31.6

Q ss_pred             chHHHHHHHHHh--CCCCc-EEEEcCCCcccHHHHHHcCCCEEEE
Q psy11601         15 DMMPKVKWLREN--YPTLN-IEVDGGVGPNTIDECAKAGANWIVS   56 (82)
Q Consensus        15 ~~~~ki~~~~~~--~~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~   56 (82)
                      +.++-++++|+.  ..++| |...+--+.++..+..++||+.++.
T Consensus        70 ~G~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~  114 (144)
T d1i3ca_          70 DGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT  114 (144)
T ss_dssp             CHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred             cchHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence            467778888764  23455 5567778889999999999998765

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=83.34  E-value=2.5  Score=24.01  Aligned_cols=60  Identities=8%  Similarity=0.125  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHhC--CCCc-EEEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENY--PTLN-IEVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQK   79 (82)
Q Consensus        15 ~~~~ki~~~~~~~--~~~~-i~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~~   79 (82)
                      +.++-++++|+..  +++| |...+--+.++...+.++||+.++.     ++-++.+-.+.+++.++.
T Consensus        76 ~G~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~-----KP~~~~~L~~~i~~~l~~  138 (149)
T d1k66a_          76 DGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV-----KPLEIDRLTETVQTFIKY  138 (149)
T ss_dssp             CHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHH
Confidence            3566677776532  3566 5556778899999999999998744     444555555555555543

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=82.97  E-value=2.3  Score=23.16  Aligned_cols=59  Identities=12%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             chHHHHHHHHHhC--CCCcEEE-EcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHHHHHHHHH
Q psy11601         15 DMMPKVKWLRENY--PTLNIEV-DGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAISTLKSSVQ   78 (82)
Q Consensus        15 ~~~~ki~~~~~~~--~~~~i~~-dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~~l~~~~~   78 (82)
                      +.++-++++++..  .++|+.+ .+.-..+......++|++.+     +.++=++.+-.+.+++.++
T Consensus        59 dG~el~~~ir~~~~~~~iPii~lt~~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~i~~~l~  120 (123)
T d1mb3a_          59 SGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAY-----ISKPISVVHFLETIKRLLE  120 (123)
T ss_dssp             BHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEE-----ECSSCCHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHhCCCcCCCCeEEEEEecCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHh
Confidence            4677777787642  4577555 45556777888999999976     4455566666666666554

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.49  E-value=0.63  Score=32.64  Aligned_cols=44  Identities=18%  Similarity=0.095  Sum_probs=32.8

Q ss_pred             CcEEEEcCCCcccHHHHHHc-------CCCEEEEeccccCCCCHHHHHHHH
Q psy11601         30 LNIEVDGGVGPNTIDECAKA-------GANWIVSGTAVINCPDRIQAISTL   73 (82)
Q Consensus        30 ~~i~~dGGI~~~ni~~~~~~-------Gad~vv~gs~i~~~~d~~~~~~~l   73 (82)
                      +-|.+.||+|...++.+...       |.++++.|+.|.++.+.-+.+.+|
T Consensus       597 viVF~vGGvTy~Ei~~l~~l~~~~~~~~~~iiiGsT~iin~~~fl~~l~~L  647 (653)
T d1mqsa_         597 SLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRL  647 (653)
T ss_dssp             EEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHH
T ss_pred             EEEEEECCcCHHHHHHHHHHHHhccCCCcEEEEeeCCeecHHHHHHHHHHh
Confidence            46999999999999987652       556777788899765555555444

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.17  E-value=2.5  Score=26.74  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCCcccHHHHHH-cCCCEEEEeccccCC
Q psy11601         29 TLNIEVDGGVGPNTIDECAK-AGANWIVSGTAVINC   63 (82)
Q Consensus        29 ~~~i~~dGGI~~~ni~~~~~-~Gad~vv~gs~i~~~   63 (82)
                      +++|.==|.++++|+.++.+ .++|++-+|++=..+
T Consensus       210 ~~~iLYGGSV~~~N~~~i~~~~~vDG~LVGgASL~~  245 (257)
T d1mo0a_         210 ATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKP  245 (257)
T ss_dssp             HSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGGST
T ss_pred             cccEEeeCCcCHHHHHHHhcCCCCCeEEeehHhCCh
Confidence            46788889999999999977 599999999886653

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=81.02  E-value=4  Score=26.48  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             chHHHHHHHHHhCCCCcEEEEc-----------------------CCCcccHHHHHHcCCCEEEEecccc
Q psy11601         15 DMMPKVKWLRENYPTLNIEVDG-----------------------GVGPNTIDECAKAGANWIVSGTAVI   61 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~~~i~~dG-----------------------GI~~~ni~~~~~~Gad~vv~gs~i~   61 (82)
                      -.+++++++++.. ++|++.=|                       |+..+.+.+..+.|+.-|=+++.+.
T Consensus       189 l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiNi~T~l~  257 (305)
T d1rvga_         189 IDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLR  257 (305)
T ss_dssp             CCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred             chHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEEEeChHHH
Confidence            4578888888876 58999988                       7789999999999999998887663

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.07  E-value=3.1  Score=22.71  Aligned_cols=55  Identities=11%  Similarity=0.215  Sum_probs=35.1

Q ss_pred             chHHHHHHHHHhCCC-CcE-EEEcCCCcccHHHHHHcCCCEEEEeccccCCCCHHHHHH
Q psy11601         15 DMMPKVKWLRENYPT-LNI-EVDGGVGPNTIDECAKAGANWIVSGTAVINCPDRIQAIS   71 (82)
Q Consensus        15 ~~~~ki~~~~~~~~~-~~i-~~dGGI~~~ni~~~~~~Gad~vv~gs~i~~~~d~~~~~~   71 (82)
                      +.++-++++|+..+. .++ ...+--+.+...+..++||+.++.=-  |..++..++++
T Consensus        61 dG~e~~~~ir~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~~l~KP--~~~~~L~~~i~  117 (123)
T d1dz3a_          61 DGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKP--FDMENLAHHIR  117 (123)
T ss_dssp             CHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECS--SCCTTHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCeEEEEECcCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHH
Confidence            457777778765433 344 45566677888899999999886532  33444444443