Psyllid ID: psy11602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080---
Protein Sequence
VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKVLIDEAMIQNEKDLIATEKERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRLQKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccccccccccccccccccEEccccccHHHccccccccccccHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHccccEEEEEcccccEEEEEcccccHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHccccEEEEEcccccEEEEEcccccHHHHHHccccEEcccccccccccEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHcccccccccccccccccccccEEEEcccHHHHHHHHHcccccccccccccccccccHHHccccccccccccccccccccccHHHHHHHHcccHHHHHHccccHHHHHHHHcccccHHHHHHcccccHHHHHHHHccccccccEEEEEHHccccHHHHHHHEEEEcccccccccEEEEEEcccccccccccccEEEEccccccccccccccccEEEEccccccccccHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccHHccccccccccccccccccEEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccccEEEccccHHHHHHcccccEEEHHHccEEEEEEEEEEccccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEEEEHHHcEEEEEEEEEEEEcccHHHHccEEEcccccEcccHHHHHHHHHHHHHHHccccccEEHHHHHHHcccccEcccccEEEEccEEEcccHccccHHccccccccHHHHHHcccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEEEEHHHcEEEEEEEEEEEEcccHHHHccEEccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccEccHHHcHHccccEEEccccccccccccccccccHHHHccccccccccccccEEcHcHccccccccccHHHHHEEcccccccccccccccccccEEEEEcccccccHccHHHcccHHHcccEEEEEcHHHHHHHHHHHHHHHHHccHHHEEEccccccHHHHHHccccHHcHHHHHHHHHHHccccEEEEEEEEcccccccHHEEEcccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHEEEEEEEcccccccccHEEEcccccEEEEcccccccccEEEEcccccccccccccHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccEEEEcccccEEEEEEEEEccccccccccccccEEEEEccccccccccccccccccHHHHHHHccccccccccEEEEEEEEEccccccHccccEEEEEEEcHHccccccccHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHEEHHHHHHHHHccccccHccHHHHHHHHHccccHHHHHHHHHHHHHHEEEEEEcccccccHHHHHHHccccccccccccccccccccccEEEEEHHcccccccccccccccccc
Coil and Loop (DISEMBL)
vigkgekvgdsapekdelddkyliatseqpicavhrdswlpeaslpirylgVSTCfrqevgshgrdtrgifrvhqFEKVEQFvltsphddesWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKkldleawfpgsgafRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILEThqtetgvripdclrkfvpavylneageipfvktapideeETKKQKKQKEGMKKKLTMSLFSqvgshgrdtrgifrvhqFEKVEQFvltsphddesWKMLDEMIQNSEEFYadldtrgifrvhqfEKVEQFvltsphddeswKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKkldleawfpgsgaFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILEThqtetgvripdclrkfvpavyvneageipfvktapideeETKKQKKQKEGMKKKVLIDEAMIQNEKDLIATEKERNNALREVIgkgekvgdsapekdelddkyliatseqpicavhrdswlpeaslpirylgvstcfrqecdagmcrtyFHVTCAQRegllseatseevdqadpfyahcrLHADKLEDFSKFSKILVCCVClgersddvneivecdscgvtvHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVClgersddvneivecdscgvtvhegcygvqdtasisstvsscstepwfcescragiaeptcelcpnfgeNHLRGLFENIKNGHAQRDRMRyhachlrdsrdssdgdrggifketdvgKWVHLVCALyipgvafgevdrlsnvtlfempysrwgakscalcpdesyartelalqsppvncvptLLVYMEvvfpqppqrklgkyKVKYVDmkslrnppwvptqklarpltssATLCRALLHKARLMEVDTGAVAQAQSDLATLAdmnkkwhiplaFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRLQKTYDELVYMEvvfpqpplskqawgvlshkcglchlshdphtmakcdtchlyyhlacldppllrmpkktklmgw
Flexible Loop (DISEMBL)
vigkgekvgdsapekdeLDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILEThqtetgvripdCLRKFVPAVYLNEageipfvktapideeetkkqkkqkegmkkklTMSLfsqvgshgrdTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFvltsphddesWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILEThqtetgvripdCLRKFVPAVYVNEageipfvktapideeetkkqkkqkegmkkkvlideaMIQNEKDLIATEKERNNALrevigkgekvgdsapekdELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHlrdsrdssdgdrgGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVfpqppqrklgkyKVKYVDMKSlrnppwvptqklarpltsSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAvendslqseqsRLQKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACldppllrmpkktklmgw
Low Complexity Region (SEG)
VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDeeetkkqkkqkegmkkkLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDeeetkkqkkqkegmkkkVLIDEAMIQNEKDLIATEKERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDtasisstvsscstEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLrdsrdssdgdrggIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRLQKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW
Disordered region (IsUnstruct)
********************KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKT***********************************DTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT********************************************************************KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEAT**EVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHL************GIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLT*********************KTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLL***********
Disordered Region (DISOPRED)
**G**EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDE****************LTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQ*****EKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKT**********************LIDEAMIQNEKDLIATEKERNNALREVIGKGEKVGDS*PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRM*******************GIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNC*************************************WVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQS*********KKWHIPLAFNVEFVAYFLNRNGRLG***********************QKTYDELVYM*******************KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPL************
Disordered Region (DISEMBL)
**************KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID****************KLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPID***************KKVLIDEAMIQNEKDLIATEKERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTAS**********EPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHL**********RGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAV***********LQKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW
Disordered Region (DISPRO)
***KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE*GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETK********MKKKVLIDEAMIQNEKDLIATEKERNNALREVIGK****GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRD****S**DRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRLQKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKVLIDEAMxxxxxxxxxxxxxxxxxxxxxIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRxxxxxxxxxxxxxxxxxxxxxQSRLQKTYDELVYMEVVFPQPPLSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1083	2.2.26 [Sep-21-2011]
Q6P799	512	Serine--tRNA ligase, cyto	yes	N/A	0.216	0.458	0.683	7e-94
P26638	512	Serine--tRNA ligase, cyto	yes	N/A	0.217	0.460	0.670	2e-93
Q4R4U9	514	Serine--tRNA ligase, cyto	N/A	N/A	0.217	0.459	0.666	5e-93
Q9GMB8	514	Serine--tRNA ligase, cyto	yes	N/A	0.217	0.459	0.662	1e-92
P49591	514	Serine--tRNA ligase, cyto	yes	N/A	0.217	0.459	0.662	1e-92
Q5R9K9	514	Serine--tRNA ligase, cyto	yes	N/A	0.217	0.459	0.662	1e-92
Q18678	487	Probable serine--tRNA lig	yes	N/A	0.210	0.468	0.638	4e-86
P26636	199	Serine--tRNA ligase, cyto	no	N/A	0.169	0.924	0.716	1e-74
Q39230	451	Serine--tRNA ligase OS=Ar	yes	N/A	0.194	0.467	0.572	4e-69
Q7KWQ2	451	Serine--tRNA ligase, cyto	yes	N/A	0.182	0.439	0.595	5e-68

>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1 SV=3

 Score =  346 bits (887), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 173/253 (68%), Positives = 198/253 (78%), Gaps = 18/253 (7%)

Query: 1   VIGKG-EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 59
           VIGKG EK  DS+      D+KYLIATSEQPI A+HRD WL    LPI+Y G STCFRQE
Sbjct: 250 VIGKGSEKSDDSS-----YDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGFSTCFRQE 304

Query: 60  VGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNI 119
           VGSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M DEMI  +EEFY  LGI Y +VNI
Sbjct: 305 VGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMITTAEEFYQSLGIPYHIVNI 364

Query: 120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ--------- 170
           VSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+         
Sbjct: 365 VSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVH 424

Query: 171 KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEET 230
            + AT CATTR ICAILE +QTE G+ +P+ LR+F+P   L E   IPFVK APID+E +
Sbjct: 425 MLNATMCATTRTICAILENYQTEKGIVVPEKLREFMPP-GLQEL--IPFVKPAPIDQEPS 481

Query: 231 KKQKKQKEGMKKK 243
           KKQKKQ EG KKK
Sbjct: 482 KKQKKQHEGSKKK 494

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Rattus norvegicus (taxid: 10116)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1

>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3

 Score =  345 bits (884), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/252 (67%), Positives = 196/252 (77%), Gaps = 16/252 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct: 250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M DEMI  +EEFY  LGI Y +VNIV
Sbjct: 306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEEFYQSLGIPYHIVNIV 365

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct: 366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTR ICAILE +Q E G+ +P+ LR+F+P   L E   IPFVK APID+E +K
Sbjct: 426 LNATMCATTRTICAILENYQAEKGIAVPEKLREFMPP-GLQEL--IPFVKPAPIDQEPSK 482

Query: 232 KQKKQKEGMKKK 243
           KQKKQ EG KKK
Sbjct: 483 KQKKQHEGSKKK 494

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS PE=2 SV=3

 Score =  343 bits (880), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 168/252 (66%), Positives = 197/252 (78%), Gaps = 16/252 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct: 250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct: 306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct: 366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK APID+E +K
Sbjct: 426 LNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKPAPIDQEPSK 482

Query: 232 KQKKQKEGMKKK 243
           KQKKQ EG KKK
Sbjct: 483 KQKKQHEGSKKK 494

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3

 Score =  342 bits (876), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/252 (66%), Positives = 197/252 (78%), Gaps = 16/252 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +  D     +  ++KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct: 250 VIGKGSEKSDD----NSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct: 306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEEFYQSLGIPYHIVNIV 365

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct: 366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK APID+E +K
Sbjct: 426 LNATMCATTRTICAILENYQTEKGILVPEKLKEFMPP-GLQEL--IPFVKAAPIDQEPSK 482

Query: 232 KQKKQKEGMKKK 243
           KQKKQ EG KKK
Sbjct: 483 KQKKQHEGSKKK 494

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3

 Score =  342 bits (876), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/252 (66%), Positives = 197/252 (78%), Gaps = 16/252 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct: 250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct: 306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct: 366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK API++E +K
Sbjct: 426 LNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKPAPIEQEPSK 482

Query: 232 KQKKQKEGMKKK 243
           KQKKQ EG KKK
Sbjct: 483 KQKKQHEGSKKK 494

Catalyzes the attachment of serine to tRNA(Ser). Is also probably able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2 SV=3

 Score =  341 bits (875), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/252 (66%), Positives = 197/252 (78%), Gaps = 16/252 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct: 250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct: 306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct: 366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK API++E +K
Sbjct: 426 LNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKPAPIEQEPSK 482

Query: 232 KQKKQKEGMKKK 243
           KQKKQ EG KKK
Sbjct: 483 KQKKQHEGSKKK 494

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=srs-2 PE=3 SV=1

 Score =  320 bits (820), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 157/246 (63%), Positives = 188/246 (76%), Gaps = 18/246 (7%)

Query: 1   VIGKGEKV-GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 59
           V  KG ++ GD++     +D+KYLIATSEQPI A HR+ W+ E  LPI+Y GVSTCFRQE
Sbjct: 250 VSSKGSEIAGDTS-----VDEKYLIATSEQPIAAYHRNEWIKETELPIKYAGVSTCFRQE 304

Query: 60  VGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNI 119
           VGSHGRDTRGIFRVHQFEK+EQFVL SP+D+ESW + DEMI N+E +Y +L I Y+VVNI
Sbjct: 305 VGSHGRDTRGIFRVHQFEKIEQFVLCSPNDNESWTLFDEMIGNAESYYQELQIPYQVVNI 364

Query: 120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ--------- 170
           VSG LN+AAAKK DLEAWFPGSGA+RELVSCSNCLDYQSRRL VRYGQTK+         
Sbjct: 365 VSGELNNAAAKKFDLEAWFPGSGAYRELVSCSNCLDYQSRRLKVRYGQTKKLSGEVPFVH 424

Query: 171 KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEET 230
            + AT CATTRVICAILE +QTE G+ +P  +++++P  Y      IPFVK APIDE+  
Sbjct: 425 MLNATMCATTRVICAILENNQTEEGINVPTAIQQWMPENYRT---FIPFVKPAPIDEDAK 481

Query: 231 KKQKKQ 236
           K   K+
Sbjct: 482 KATGKK 487

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P26636|SYSC_CRIGR Serine--tRNA ligase, cytoplasmic (Fragment) OS=Cricetulus griseus GN=SARS PE=2 SV=1

 Score =  282 bits (721), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 157/187 (83%), Gaps = 3/187 (1%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DTRGIFRVHQFEK+EQFV TSPHD++SW+  +EMI  +EEFY  LGI Y +VNIVSG+LN
Sbjct: 5   DTRGIFRVHQFEKIEQFVYTSPHDNKSWEMFEEMIGTAEEFYQSLGIPYHIVNIVSGSLN 64

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           HAA+KKLDLEAWFPGSGAFRELVSCSNC  YQ+RRL +RYGQTKKM +K+EFVHMLNAT 
Sbjct: 65  HAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATM 124

Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQ 482
           CATTR ICAILE +QTE G+ +P+ LR+F+P   + E   IPFVK APID+E +KKQKKQ
Sbjct: 125 CATTRTICAILENYQTEKGIIVPEKLREFMPPG-LQEL--IPFVKPAPIDQEPSKKQKKQ 181

Query: 483 KEGMKKK 489
            EG KK+
Sbjct: 182 HEGSKKE 188

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Cricetulus griseus (taxid: 10029)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1

 Score =  263 bits (673), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 163/229 (71%), Gaps = 18/229 (7%)

Query: 17  ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQF 76
           E DDKYLIAT+EQP+CA H D W+    LP+RY G S+CFR+E GSHGRDT GIFRVHQF
Sbjct: 229 EGDDKYLIATAEQPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQF 288

Query: 77  EKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEA 136
           EK+EQF +T P+++ SW+MLDEM++NSE+FY  L + Y++V+IVSGALN AAAKK DLEA
Sbjct: 289 EKIEQFCITGPNENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEA 348

Query: 137 WFPGSGAFRELVSCSNCLDYQSRRLLVRYG------QTKQKIY---ATACATTRVICAIL 187
           WFP S  FRELVSCSNC DYQ+RRL +RYG      QTKQ ++   +T  AT R IC IL
Sbjct: 349 WFPSSETFRELVSCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCIL 408

Query: 188 ETHQTETGVRIPDCLRKFVPAVYLNEAGE--IPFVKTAPIDEEETKKQK 234
           E +Q E GV IP+ L+ F+        GE  +PF     + + + KK K
Sbjct: 409 ENYQREDGVDIPEVLQPFM-------GGETFLPFKAKPVVADTKGKKSK 450

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=serS PE=1 SV=1

 Score =  260 bits (664), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 155/215 (72%), Gaps = 17/215 (7%)

Query: 19  DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK 78
           ++KYLIATSEQPI A H+D W+ E  LP +Y+G STCFR+E GSHGRDT GIFRVHQFEK
Sbjct: 229 EEKYLIATSEQPISAFHQDEWIEEKDLPKKYVGYSTCFRKEAGSHGRDTWGIFRVHQFEK 288

Query: 79  VEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWF 138
           +EQF +T P  ++SW M++EMI NSE+FY +LGI YRVVNIVSGALN+AA+KK DLE WF
Sbjct: 289 IEQFCITEP--EKSWDMMEEMINNSEQFYQELGIPYRVVNIVSGALNNAASKKYDLEGWF 346

Query: 139 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTK---------QKIYATACATTRVICAILET 189
           PG   +RELVSCSNC DYQSR L +R G  K           + +T  ATTRVIC ILE 
Sbjct: 347 PGYNQYRELVSCSNCTDYQSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILEN 406

Query: 190 HQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAP 224
           +QTE G+ +P  LR ++   +      IPFVK AP
Sbjct: 407 YQTEGGITVPVPLRPYLGKDF------IPFVKAAP 435

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1083
328711565	232	PREDICTED: seryl-tRNA synthetase, cytopl	0.204	0.956	0.803	1e-106
328712780	489	PREDICTED: seryl-tRNA synthetase, cytopl	0.211	0.468	0.773	1e-105
91086675	499	PREDICTED: similar to seryl-tRNA synthet	0.216	0.470	0.709	1e-96
270010395	529	hypothetical protein TcasGA2_TC009786 [T	0.216	0.444	0.709	2e-96
195433819	502	GK14956 [Drosophila willistoni] gi|19416	0.204	0.440	0.725	9e-95
427797879	566	Putative seryl-trna synthetase, partial	0.214	0.409	0.706	1e-94
156552806	494	PREDICTED: seryl-tRNA synthetase, cytopl	0.216	0.475	0.705	1e-94
195386010	501	GJ10873 [Drosophila virilis] gi|19414815	0.204	0.443	0.722	1e-94
427789377	498	Putative seryl-trna synthetase [Rhipicep	0.214	0.465	0.706	1e-94
58389688	503	AGAP008265-PA [Anopheles gambiae str. PE	0.205	0.443	0.722	1e-94

>gi|328711565|ref|XP_003244573.1| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like, partial [Acyrthosiphon pisum]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/234 (80%), Positives = 206/234 (88%), Gaps = 12/234 (5%)

Query: 19  DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK 78
           DDKYLIATSEQPI A+HRD WLPEAS PIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK
Sbjct: 1   DDKYLIATSEQPIAALHRDQWLPEASFPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK 60

Query: 79  VEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWF 138
           VEQFVLTSP D++SW + DEMI NS +FY DLGIAYRVVNIVSGALNHAAAKKLDLEAWF
Sbjct: 61  VEQFVLTSPFDNQSWILFDEMINNSRQFYDDLGIAYRVVNIVSGALNHAAAKKLDLEAWF 120

Query: 139 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------KIYATACATTRVICAILET 189
           PGSGAFRELVSCSNCLDYQSRRLLVRYGQTK+          + ATACATTRVICAILET
Sbjct: 121 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKVDYVHMLNATACATTRVICAILET 180

Query: 190 HQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKK 243
           +QTETG+++P+ L+K++P  Y +   EIPFVK+APIDEE+TKKQKKQKEGMK K
Sbjct: 181 YQTETGIKVPEILKKYLPTRYQD---EIPFVKSAPIDEEDTKKQKKQKEGMKNK 231

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712780|ref|XP_001945803.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum]

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/247 (77%), Positives = 211/247 (85%), Gaps = 18/247 (7%)

Query: 1   VIGKG-EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 59
           VIGKG EKVGD       LD+KYLIATSEQPI A+HRD WLPEAS PIRYLGVSTCFRQE
Sbjct: 249 VIGKGSEKVGDH-----NLDEKYLIATSEQPIAALHRDQWLPEASFPIRYLGVSTCFRQE 303

Query: 60  VGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNI 119
           VGSHGRDTRGIFRVHQFEKVEQFVLTSP D++SW + DEMI NS +FY DLGIAYRVVNI
Sbjct: 304 VGSHGRDTRGIFRVHQFEKVEQFVLTSPFDNQSWILFDEMINNSRQFYDDLGIAYRVVNI 363

Query: 120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-------- 171
           VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK+         
Sbjct: 364 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKKMNEKVDYVH 423

Query: 172 -IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEET 230
            + ATACATTRVICAILET+QTETG+++P+ L+K++P  Y +   EIPFVK+APIDEE+T
Sbjct: 424 MLNATACATTRVICAILETYQTETGIKVPEILKKYLPTRYQD---EIPFVKSAPIDEEDT 480

Query: 231 KKQKKQK 237
           KKQK +K
Sbjct: 481 KKQKNKK 487

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086675|ref|XP_968460.1| PREDICTED: similar to seryl-tRNA synthetase [Tribolium castaneum]

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 202/251 (80%), Gaps = 16/251 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +      E  E+++KYLIATSEQPI A HRD W+ E++LPI+Y G+STCFRQEV
Sbjct: 251 VIGKGSE----KAEDKEIEEKYLIATSEQPIAAFHRDEWISESALPIKYAGLSTCFRQEV 306

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQFVLTSP D++SW+M+DEMI N+EEF   L I YR+VNIV
Sbjct: 307 GSHGRDTRGIFRVHQFEKVEQFVLTSPFDNKSWEMMDEMINNAEEFCKALQIPYRIVNIV 366

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALN+AAAKKLDLEAWFP SGAFRELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 367 SGALNNAAAKKLDLEAWFPASGAFRELVSCSNCLDYQARRLLVRYGQTKKMNAATDYVHM 426

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTRVICAILE HQTETGV++P  L+ F+P  Y     EIPFVK API+ E TK
Sbjct: 427 LNATMCATTRVICAILEVHQTETGVKVPPVLKDFLPEEYRE---EIPFVKPAPIEVEATK 483

Query: 232 KQKKQKEGMKK 242
           K KKQKEGMKK
Sbjct: 484 KSKKQKEGMKK 494

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010395|gb|EFA06843.1| hypothetical protein TcasGA2_TC009786 [Tribolium castaneum]

 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 202/251 (80%), Gaps = 16/251 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +      E  E+++KYLIATSEQPI A HRD W+ E++LPI+Y G+STCFRQEV
Sbjct: 251 VIGKGSE----KAEDKEIEEKYLIATSEQPIAAFHRDEWISESALPIKYAGLSTCFRQEV 306

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQFVLTSP D++SW+M+DEMI N+EEF   L I YR+VNIV
Sbjct: 307 GSHGRDTRGIFRVHQFEKVEQFVLTSPFDNKSWEMMDEMINNAEEFCKALQIPYRIVNIV 366

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALN+AAAKKLDLEAWFP SGAFRELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 367 SGALNNAAAKKLDLEAWFPASGAFRELVSCSNCLDYQARRLLVRYGQTKKMNAATDYVHM 426

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTRVICAILE HQTETGV++P  L+ F+P  Y     EIPFVK API+ E TK
Sbjct: 427 LNATMCATTRVICAILEVHQTETGVKVPPVLKDFLPEEYRE---EIPFVKPAPIEVEATK 483

Query: 232 KQKKQKEGMKK 242
           K KKQKEGMKK
Sbjct: 484 KSKKQKEGMKK 494

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195433819|ref|XP_002064904.1| GK14956 [Drosophila willistoni] gi|194160989|gb|EDW75890.1| GK14956 [Drosophila willistoni]

 Score =  355 bits (910), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 196/237 (82%), Gaps = 16/237 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           V+GKG +  + A      D+KYLIATSEQPI A HRD WLPEASLPI+Y G+STCFRQEV
Sbjct: 251 VVGKGSEKAEEAG----TDEKYLIATSEQPIAAYHRDEWLPEASLPIKYAGLSTCFRQEV 306

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQFVLTSPHD++SW+M+DEMI N+E+F   LGI YRVVNIV
Sbjct: 307 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAEQFCQSLGIPYRVVNIV 366

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALNHAA+KKLDLEAWF GSGA+RELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 367 SGALNHAASKKLDLEAWFGGSGAYRELVSCSNCLDYQARRLLVRYGQTKKMNASVDYVHM 426

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEE 228
           + AT CA TRVICAILETHQTETG+++P+ L+KF+PA Y +   EIPFVK APID E
Sbjct: 427 LNATLCAATRVICAILETHQTETGIKVPEPLKKFMPAKYQD---EIPFVKPAPIDLE 480

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427797879|gb|JAA64391.1| Putative seryl-trna synthetase, partial [Rhipicephalus pulchellus]

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 200/252 (79%), Gaps = 20/252 (7%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG   GD A     +D+KYLIATSEQPI A HRD WL   +LPIRY G+S+CFRQEV
Sbjct: 250 VIGKG---GDGA-----VDEKYLIATSEQPIAAFHRDEWLSPEALPIRYAGISSCFRQEV 301

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQF +TSPHD++SW+M DEMI N+EEF   LGI YRVV+IV
Sbjct: 302 GSHGRDTRGIFRVHQFEKVEQFCITSPHDNKSWEMFDEMIGNAEEFCQKLGIPYRVVSIV 361

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALN+AAAKK DLEAWFPGSGAFRELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 362 SGALNNAAAKKHDLEAWFPGSGAFRELVSCSNCLDYQARRLLVRYGQTKKMNAQTEYVHM 421

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTRVICAILE +QTE GV +P+ LR F+P  Y      IPFVK APIDE ETK
Sbjct: 422 LNATMCATTRVICAILENNQTEEGVIVPEALRPFMPPAYRE---MIPFVKPAPIDEAETK 478

Query: 232 KQKKQKEGMKKK 243
           KQ+K +EGM+KK
Sbjct: 479 KQRKHREGMEKK 490

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552806|ref|XP_001599572.1| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like [Nasonia vitripennis]

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/251 (70%), Positives = 206/251 (82%), Gaps = 16/251 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG + GD    + EL++KYLIATSEQPI A HR  W+PEA+LPIRY G+STCFRQEV
Sbjct: 251 VIGKGSEKGD----EKELEEKYLIATSEQPIAAYHRGEWIPEATLPIRYAGLSTCFRQEV 306

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQF LTSPHD++SW+M++EMI+N+E+FY +L I YR+VNIV
Sbjct: 307 GSHGRDTRGIFRVHQFEKVEQFCLTSPHDNKSWEMMEEMIRNAEDFYQELNIPYRIVNIV 366

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALNHAA+KKLDLEAWFPGSGAFRELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 367 SGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLDYQARRLLVRYGQTKKMNASTDYVHM 426

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CA TRVICA+LE +QTETG+++P  + +F+P  Y     EIPFVK APIDE E K
Sbjct: 427 LNATMCAVTRVICAVLEINQTETGIKVPKAIAQFMPTQYQE---EIPFVKPAPIDEVEIK 483

Query: 232 KQKKQKEGMKK 242
           KQKKQKE M K
Sbjct: 484 KQKKQKENMNK 494

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386010|ref|XP_002051697.1| GJ10873 [Drosophila virilis] gi|194148154|gb|EDW63852.1| GJ10873 [Drosophila virilis]

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/238 (72%), Positives = 197/238 (82%), Gaps = 16/238 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           V+GKG +      E+   D+KYLIATSEQPI A HRD WLPEASLPI+Y G+STCFRQEV
Sbjct: 251 VVGKGSERA----EESGTDEKYLIATSEQPIAAYHRDEWLPEASLPIKYAGLSTCFRQEV 306

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQFVLTSPHD++SW+M+DEMI N+E+F   LGI YRVVNIV
Sbjct: 307 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAEQFCQSLGIPYRVVNIV 366

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALNHAA+KKLDLEAWF GSGA+RELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 367 SGALNHAASKKLDLEAWFGGSGAYRELVSCSNCLDYQARRLLVRYGQTKKMNAAVDYVHM 426

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEE 229
           + AT CA TRVICAILETHQTETGV++P+ L+KF+P+ Y +   EIPFVK APID E+
Sbjct: 427 LNATMCAATRVICAILETHQTETGVKVPEPLKKFMPSKYQD---EIPFVKPAPIDLEQ 481

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789377|gb|JAA60140.1| Putative seryl-trna synthetase [Rhipicephalus pulchellus]

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 200/252 (79%), Gaps = 20/252 (7%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG   GD A     +D+KYLIATSEQPI A HRD WL   +LPIRY G+S+CFRQEV
Sbjct: 250 VIGKG---GDGA-----VDEKYLIATSEQPIAAFHRDEWLSPEALPIRYAGISSCFRQEV 301

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQF +TSPHD++SW+M DEMI N+EEF   LGI YRVV+IV
Sbjct: 302 GSHGRDTRGIFRVHQFEKVEQFCITSPHDNKSWEMFDEMIGNAEEFCQKLGIPYRVVSIV 361

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALN+AAAKK DLEAWFPGSGAFRELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 362 SGALNNAAAKKHDLEAWFPGSGAFRELVSCSNCLDYQARRLLVRYGQTKKMNAQTEYVHM 421

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETK 231
           + AT CATTRVICAILE +QTE GV +P+ LR F+P  Y      IPFVK APIDE ETK
Sbjct: 422 LNATMCATTRVICAILENNQTEEGVIVPEALRPFMPPAYRE---MIPFVKPAPIDEAETK 478

Query: 232 KQKKQKEGMKKK 243
           KQ+K +EGM+KK
Sbjct: 479 KQRKHREGMEKK 490

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58389688|ref|XP_317207.2| AGAP008265-PA [Anopheles gambiae str. PEST] gi|55237426|gb|EAA12316.2| AGAP008265-PA [Anopheles gambiae str. PEST]

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/238 (72%), Positives = 195/238 (81%), Gaps = 15/238 (6%)

Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           V+GKG    + A +    D+KYLIATSEQPI A HRD W+PEASLPI+Y G+STCFRQEV
Sbjct: 251 VVGKG---SERAEDGTATDEKYLIATSEQPIAAYHRDEWIPEASLPIKYAGLSTCFRQEV 307

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEKVEQFVLTSPHD++SW+M+DEMI N+E F   LGI YRVVNIV
Sbjct: 308 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAEAFCQSLGIPYRVVNIV 367

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SGALNHAA+KKLDLEAWF GSGAFRELVSCSNCLDYQ+RRLLVRYGQTK+          
Sbjct: 368 SGALNHAASKKLDLEAWFAGSGAFRELVSCSNCLDYQARRLLVRYGQTKKMNAAVDYVHM 427

Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEE 229
           + AT CATTRVICAILETHQTETGV++P+ L+K++P  Y     EIPFVK APID E+
Sbjct: 428 LNATMCATTRVICAILETHQTETGVKVPEVLQKYMPEKYRE---EIPFVKPAPIDVEQ 482

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1083
FB|FBgn0031497	501	CG17259 [Drosophila melanogast	0.202	0.437	0.710	1.1e-85
UNIPROTKB|Q5T5C7	536	SARS "Serine--tRNA ligase, cyt	0.153	0.309	0.729	3.9e-83
FB|FBgn0031606	1008	CG15439 [Drosophila melanogast	0.066	0.071	0.708	8.1e-81
RGD|628813	512	Sars "seryl-tRNA synthetase" [	0.201	0.425	0.682	1.2e-79
UNIPROTKB|Q6P799	512	Sars "Serine--tRNA ligase, cyt	0.201	0.425	0.682	1.2e-79
MGI|MGI:102809	512	Sars "seryl-aminoacyl-tRNA syn	0.202	0.427	0.668	2e-79
UNIPROTKB|F1S5Z3	514	SARS "Uncharacterized protein"	0.202	0.426	0.668	2.6e-79
UNIPROTKB|Q9GMB8	514	SARS "Serine--tRNA ligase, cyt	0.202	0.426	0.659	8.7e-79
UNIPROTKB|P49591	514	SARS "Serine--tRNA ligase, cyt	0.202	0.426	0.659	8.7e-79
UNIPROTKB|E2R4D5	513	SARS "Uncharacterized protein"	0.202	0.426	0.659	1.1e-78

FB|FBgn0031497 CG17259 [Drosophila melanogaster (taxid:7227)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 167/235 (71%), Positives = 196/235 (83%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             V+GKG +      E+  +D+KYLIATSEQPI A HRD WLPE+SLPI+Y G+STCFRQEV
Sbjct:   251 VVGKGSEKA----EEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLSTCFRQEV 306

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEKVEQFVLTSPHD++SW+M+DEMI N+E+F   LGI YRVVNIV
Sbjct:   307 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAEQFCQSLGIPYRVVNIV 366

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--------- 171
             SGALNHAA+KKLDLEAWF GSGA+RELVSCSNCLDYQ+RRLLVR+GQTK+          
Sbjct:   367 SGALNHAASKKLDLEAWFGGSGAYRELVSCSNCLDYQARRLLVRFGQTKKMNAAVDYVHM 426

Query:   172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
             + AT CA TRVICAILETHQTETG+++P+ L+K++PA + +E   IPFVK APID
Sbjct:   427 LNATMCAATRVICAILETHQTETGIKVPEPLKKYMPAKFQDE---IPFVKPAPID 478

GO:0004828 "serine-tRNA ligase activity" evidence=ISS

GO:0006434 "seryl-tRNA aminoacylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IDA

UNIPROTKB|Q5T5C7 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 672 (241.6 bits), Expect = 3.9e-83, Sum P(2) = 3.9e-83
 Identities = 124/170 (72%), Positives = 143/170 (84%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct:   250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct:   306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ 170
             SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+
Sbjct:   366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKK 415

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0031606 CG15439 [Drosophila melanogaster (taxid:7227)]

 Score = 310 (114.2 bits), Expect = 8.1e-81, Sum P(5) = 8.1e-81
 Identities = 51/72 (70%), Positives = 56/72 (77%)

Query:   693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDXXXXXXXXXXXXXEPWFCESCRAGI 752
             +CCVCLGERSDDVNEIVECDSCGV+VHEGCYGV D             EPWFCE+CRAG+
Sbjct:   120 MCCVCLGERSDDVNEIVECDSCGVSVHEGCYGVSDNVSISSTNSTCSTEPWFCEACRAGV 179

Query:   753 AEPTCELCPNFG 764
             +EP CELCPN G
Sbjct:   180 SEPDCELCPNKG 191

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

RGD|628813 Sars "seryl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 161/236 (68%), Positives = 184/236 (77%)

Query:     1 VIGKG-EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 59
             VIGKG EK  DS+      D+KYLIATSEQPI A+HRD WL    LPI+Y G STCFRQE
Sbjct:   250 VIGKGSEKSDDSS-----YDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGFSTCFRQE 304

Query:    60 VGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNI 119
             VGSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M DEMI  +EEFY  LGI Y +VNI
Sbjct:   305 VGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMITTAEEFYQSLGIPYHIVNI 364

Query:   120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-------- 171
             VSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+         
Sbjct:   365 VSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVH 424

Query:   172 -IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
              + AT CATTR ICAILE +QTE G+ +P+ LR+F+P   L E   IPFVK APID
Sbjct:   425 MLNATMCATTRTICAILENYQTEKGIVVPEKLREFMPPG-LQEL--IPFVKPAPID 477

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

UNIPROTKB|Q6P799 Sars "Serine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 161/236 (68%), Positives = 184/236 (77%)

Query:     1 VIGKG-EKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 59
             VIGKG EK  DS+      D+KYLIATSEQPI A+HRD WL    LPI+Y G STCFRQE
Sbjct:   250 VIGKGSEKSDDSS-----YDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGFSTCFRQE 304

Query:    60 VGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNI 119
             VGSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M DEMI  +EEFY  LGI Y +VNI
Sbjct:   305 VGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMITTAEEFYQSLGIPYHIVNI 364

Query:   120 VSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-------- 171
             VSG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+         
Sbjct:   365 VSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVH 424

Query:   172 -IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
              + AT CATTR ICAILE +QTE G+ +P+ LR+F+P   L E   IPFVK APID
Sbjct:   425 MLNATMCATTRTICAILENYQTEKGIVVPEKLREFMPPG-LQEL--IPFVKPAPID 477

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

MGI|MGI:102809 Sars "seryl-aminoacyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 157/235 (66%), Positives = 182/235 (77%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct:   250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M DEMI  +EEFY  LGI Y +VNIV
Sbjct:   306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFDEMIATAEEFYQSLGIPYHIVNIV 365

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--------- 171
             SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct:   366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query:   172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
             + AT CATTR ICAILE +Q E G+ +P+ LR+F+P   L E   IPFVK APID
Sbjct:   426 LNATMCATTRTICAILENYQAEKGIAVPEKLREFMPPG-LQEL--IPFVKPAPID 477

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|F1S5Z3 SARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 157/235 (66%), Positives = 184/235 (78%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             VIGKG +  D     +  ++KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct:   250 VIGKGSEKSDD----NSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SWKML EMI+ +EEFY  LGI Y +VNIV
Sbjct:   306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWKMLREMIETAEEFYQSLGIPYHIVNIV 365

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--------- 171
             SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct:   366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query:   172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
             + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK APID
Sbjct:   426 LNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPG-LQEL--IPFVKPAPID 477

GO:0005739 "mitochondrion" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

UNIPROTKB|Q9GMB8 SARS "Serine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 155/235 (65%), Positives = 183/235 (77%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             VIGKG +  D     +  ++KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct:   250 VIGKGSEKSDD----NSYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct:   306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEEFYQSLGIPYHIVNIV 365

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--------- 171
             SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct:   366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query:   172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
             + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK APID
Sbjct:   426 LNATMCATTRTICAILENYQTEKGILVPEKLKEFMPPG-LQEL--IPFVKAAPID 477

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|P49591 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 155/235 (65%), Positives = 183/235 (77%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct:   250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct:   306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--------- 171
             SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct:   366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425

Query:   172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
             + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK API+
Sbjct:   426 LNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPG-LQEL--IPFVKPAPIE 477

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

GO:0008033 "tRNA processing" evidence=TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0004828 "serine-tRNA ligase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2R4D5 SARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 155/235 (65%), Positives = 183/235 (77%)

Query:     1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
             VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct:   249 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 304

Query:    61 GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
             GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +E+FY  LGI Y +VNIV
Sbjct:   305 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEDFYQSLGIPYHIVNIV 364

Query:   121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--------- 171
             SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct:   365 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 424

Query:   172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
             + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK APID
Sbjct:   425 LNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPG-LQEL--IPFVKPAPID 476

GO:0005739 "mitochondrion" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4J8I4	SYS_SULAC	6, ., 1, ., 1, ., 1, 1	0.5025	0.1754	0.4148	yes	N/A
Q5JE75	SYS_PYRKO	6, ., 1, ., 1, ., 1, 1	0.5125	0.1745	0.4153	yes	N/A
Q8U1K2	SYS_PYRFU	6, ., 1, ., 1, ., 1, 1	0.5025	0.1745	0.4153	yes	N/A
Q2FS27	SYS_METHJ	6, ., 1, ., 1, ., 1, 1	0.5024	0.1754	0.4470	yes	N/A
O28244	SYS_ARCFU	6, ., 1, ., 1, ., 1, 1	0.5147	0.1782	0.4260	yes	N/A
Q5R9K9	SYSC_PONAB	6, ., 1, ., 1, ., 1, 1	0.6626	0.2179	0.4591	yes	N/A
P49591	SYSC_HUMAN	6, ., 1, ., 1, ., 1, 1	0.6626	0.2179	0.4591	yes	N/A
B6YWW5	SYS_THEON	6, ., 1, ., 1, ., 1, 1	0.5125	0.1745	0.4135	yes	N/A
A8AB67	SYS_IGNH4	6, ., 1, ., 1, ., 1, 1	0.53	0.1754	0.4148	yes	N/A
Q6P799	SYSC_RAT	6, ., 1, ., 1, ., 1, 1	0.6837	0.2169	0.4589	yes	N/A
C5A226	SYS_THEGJ	6, ., 1, ., 1, ., 1, 1	0.5125	0.1745	0.4153	yes	N/A
Q7KWQ2	SYSC_DICDI	6, ., 1, ., 1, ., 1, 1	0.5953	0.1828	0.4390	yes	N/A
P07284	SYSC_YEAST	6, ., 1, ., 1, ., 1, 1	0.5363	0.1874	0.4393	yes	N/A
Q18678	SYSC_CAEEL	6, ., 1, ., 1, ., 1, 1	0.6382	0.2105	0.4681	yes	N/A
Q9GMB8	SYSC_BOVIN	6, ., 1, ., 1, ., 1, 1	0.6626	0.2179	0.4591	yes	N/A
Q8SS48	SYS_ENCCU	6, ., 1, ., 1, ., 1, 1	0.5333	0.1708	0.4312	yes	N/A
Q39230	SYS_ARATH	6, ., 1, ., 1, ., 1, 1	0.5720	0.1948	0.4678	yes	N/A
Q2NEU9	SYS_METST	6, ., 1, ., 1, ., 1, 1	0.5048	0.1828	0.4669	yes	N/A
P26638	SYSC_MOUSE	6, ., 1, ., 1, ., 1, 1	0.6706	0.2179	0.4609	yes	N/A
B1L5G0	SYS_KORCO	6, ., 1, ., 1, ., 1, 1	0.5252	0.1754	0.4166	yes	N/A
O14018	SYSC_SCHPO	6, ., 1, ., 1, ., 1, 1	0.5345	0.1837	0.4422	yes	N/A
Q9UZ21	SYS_PYRAB	6, ., 1, ., 1, ., 1, 1	0.5125	0.1745	0.4153	yes	N/A
O58441	SYS_PYRHO	6, ., 1, ., 1, ., 1, 1	0.5226	0.1745	0.4153	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.11	0.737
3rd Layer	6.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1083
PLN02678	448	PLN02678, PLN02678, seryl-tRNA synthetase	1e-113
cd00770	297	cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS)	1e-106
PLN02678	448	PLN02678, PLN02678, seryl-tRNA synthetase	2e-84
PRK05431	425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	1e-80
cd00770	297	cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS)	3e-80
TIGR00414	418	TIGR00414, serS, seryl-tRNA synthetase	6e-79
COG0172	429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	3e-78
PRK05431	425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	7e-61
COG0172	429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	4e-60
TIGR00414	418	TIGR00414, serS, seryl-tRNA synthetase	3e-58
PLN02320	502	PLN02320, PLN02320, seryl-tRNA synthetase	6e-48
PLN02320	502	PLN02320, PLN02320, seryl-tRNA synthetase	1e-35
pfam00587	171	pfam00587, tRNA-synt_2b, tRNA synthetase class II	3e-32
pfam00587	171	pfam00587, tRNA-synt_2b, tRNA synthetase class II	1e-18
PLN02678	448	PLN02678, PLN02678, seryl-tRNA synthetase	2e-16
cd00770	297	cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS)	7e-16
cd00670	235	cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro	9e-16
COG5141	669	COG5141, COG5141, PHD zinc finger-containing prote	2e-15
PRK05431	425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	1e-10
TIGR00414	418	TIGR00414, serS, seryl-tRNA synthetase	3e-10
pfam13832	109	pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma	8e-10
COG0172	429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	7e-09
cd00768	211	cd00768, class_II_aaRS-like_core, Class II tRNA am	6e-08
pfam00587	171	pfam00587, tRNA-synt_2b, tRNA synthetase class II	7e-06
PLN02320	502	PLN02320, PLN02320, seryl-tRNA synthetase	1e-05
cd00670	235	cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro	2e-05
smart00249	47	smart00249, PHD, PHD zinc finger	2e-05
pfam13771	89	pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai	4e-05
pfam00628	51	pfam00628, PHD, PHD-finger	5e-05
pfam00628	51	pfam00628, PHD, PHD-finger	7e-05
pfam13831	33	pfam13831, PHD_2, PHD-finger	9e-05
smart00249	47	smart00249, PHD, PHD zinc finger	1e-04
pfam13832	109	pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma	2e-04
cd00768	211	cd00768, class_II_aaRS-like_core, Class II tRNA am	0.001

>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase

 Score =  359 bits (922), Expect = e-113
 Identities = 139/231 (60%), Positives = 167/231 (72%), Gaps = 17/231 (7%)

Query: 17  ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQF 76
           E DDKYLIATSEQP+CA HR  W+    LPIRY G STCFR+E GSHGRDT GIFRVHQF
Sbjct: 226 EGDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQF 285

Query: 77  EKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEA 136
           EKVEQF +TSP+ +ESW+M +EM++NSE+FY  LGI Y+VV+IVSGALN AAAKK DLEA
Sbjct: 286 EKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEA 345

Query: 137 WFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ----KIY-----ATACATTRVICAIL 187
           WFP S  +RELVSCSNC DYQSRRL +RYGQ K     K Y     +T  AT R +C IL
Sbjct: 346 WFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCIL 405

Query: 188 ETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKE 238
           E +QTE GVR+P+ L+ F+  +       +PF K  P    + K +KK+K+
Sbjct: 406 ENYQTEDGVRVPEVLQPFMGGIEF-----LPFKKKPP---AKGKGKKKKKK 448

Length = 448

>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain

 Score =  334 bits (859), Expect = e-106
 Identities = 116/213 (54%), Positives = 144/213 (67%), Gaps = 15/213 (7%)

Query: 6   EKVGDSAPEKDEL-----DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           E  G      ++L     +D YLIAT+E P+ A+HRD  L E  LP++Y G S CFR+E 
Sbjct: 86  EGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEA 145

Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GS GRDTRG+FRVHQFEKVEQFV T P  +ESW+ L+E+I N+EE   +LG+ YRVVNI 
Sbjct: 146 GSAGRDTRGLFRVHQFEKVEQFVFTKP--EESWEELEELISNAEEILQELGLPYRVVNIC 203

Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK--QKIY----- 173
           +G L  AAAKK D+EAW PG G +RE+ SCSNC D+Q+RRL +RY   K  +K Y     
Sbjct: 204 TGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLN 263

Query: 174 ATACATTRVICAILETHQTETG-VRIPDCLRKF 205
            TA AT R I AILE +QTE G V IP+ LR +
Sbjct: 264 GTALATPRTIVAILENYQTEDGSVVIPEVLRPY 296

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. Length = 297

>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase

 Score =  280 bits (718), Expect = 2e-84
 Identities = 104/182 (57%), Positives = 133/182 (73%), Gaps = 8/182 (4%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DT GIFRVHQFEKVEQF +TSP+ +ESW+  +EM++NSE+FY  LGI Y+VV+IVSGALN
Sbjct: 275 DTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALN 334

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            AAAKK DLEAWFP S  +RELVSCSNC  YQSRRL +RYGQ K   +  ++VH+LN+T 
Sbjct: 335 DAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTL 394

Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQ 482
            AT R +C ILE +QTE GVR+P+ L+ F+  +       +PF K  P    + K +KK+
Sbjct: 395 TATERTLCCILENYQTEDGVRVPEVLQPFMGGIEF-----LPFKKKPP---AKGKGKKKK 446

Query: 483 KE 484
           K+
Sbjct: 447 KK 448

Length = 448

>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional

 Score =  269 bits (691), Expect = 1e-80
 Identities = 88/199 (44%), Positives = 116/199 (58%), Gaps = 10/199 (5%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
           K E DD YLI T+E P+  +HRD  L E  LP++Y   S CFR E GS GRDTRG+ RVH
Sbjct: 219 KIEDDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVH 278

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF+KVE    T P  ++S+  L+E+  N+EE    L + YRVV + +G L  +AAK  DL
Sbjct: 279 QFDKVELVKFTKP--EDSYAELEELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDL 336

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYA-----TACATTRVICAIL 187
           E W P    +RE+ SCSNC D+Q+RR  +RY      +         +  A  R + AIL
Sbjct: 337 EVWLPSQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAIL 396

Query: 188 ETHQTETG-VRIPDCLRKF 205
           E +Q   G V IP+ LR +
Sbjct: 397 ENYQQADGSVTIPEVLRPY 415

Length = 425

>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain

 Score =  263 bits (675), Expect = 3e-80
 Identities = 88/150 (58%), Positives = 108/150 (72%), Gaps = 5/150 (3%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DTRG+FRVHQFEKVEQFV T P  +ESW+ L+E+I N+EE   +LG+ YRVVNI +G L 
Sbjct: 151 DTRGLFRVHQFEKVEQFVFTKP--EESWEELEELISNAEEILQELGLPYRVVNICTGDLG 208

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            AAAKK D+EAW PG G +RE+ SCSNC  +Q+RRL +RY   K    K ++VH LN TA
Sbjct: 209 FAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDG--KKQYVHTLNGTA 266

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
            AT R I AILE +QTE G V IP+ LR +
Sbjct: 267 LATPRTIVAILENYQTEDGSVVIPEVLRPY 296

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. Length = 297

>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase

 Score =  264 bits (677), Expect = 6e-79
 Identities = 96/199 (48%), Positives = 124/199 (62%), Gaps = 10/199 (5%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
           K E  D YLI T+E P+  +HR+  L E  LPI+Y   S CFR E GS+G+DT+G+ RVH
Sbjct: 221 KLEDTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVH 280

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF KVE      P  +ES + L+EM  ++E+   +L + YRVVN+ SG L  +AAKK DL
Sbjct: 281 QFNKVELVKFCKP--EESAEELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDL 338

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRYG--QTKQKIYA-----TACATTRVICAIL 187
           E W PG   +RE+ SCSNC D+Q+RRL +RY      +  Y      TA A  R I AIL
Sbjct: 339 EVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTIVAIL 398

Query: 188 ETHQTETG-VRIPDCLRKF 205
           E +QTE G V IP+ LRK+
Sbjct: 399 ENYQTEDGSVEIPEVLRKY 417

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418

>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  262 bits (673), Expect = 3e-78
 Identities = 94/198 (47%), Positives = 126/198 (63%), Gaps = 10/198 (5%)

Query: 17  ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQF 76
           E  D YLI T+E P+  +HRD  L E  LPI+Y   S CFR E GS G+DTRG+ RVHQF
Sbjct: 224 EDPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQF 283

Query: 77  EKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEA 136
           +KVE  V+T P  +ES + L+EM+ N+EE   +L + YRVVN+ +G L  +AAKK DLE 
Sbjct: 284 DKVELVVITKP--EESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEV 341

Query: 137 WFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--IYATAC-----ATTRVICAILET 189
           W PG   +RE+ SCSNC D+Q+RRL +RY   ++    +         A  R + AILE 
Sbjct: 342 WLPGQNKYREISSCSNCTDFQARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILEN 401

Query: 190 HQTETG-VRIPDCLRKFV 206
           +Q E G V+IP+ LR ++
Sbjct: 402 YQQEDGSVKIPEVLRPYM 419

Length = 429

>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional

 Score =  214 bits (547), Expect = 7e-61
 Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 5/150 (3%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DTRG+ RVHQF+KVE    T P  ++S+  L+E+  N+EE    L + YRVV + +G L 
Sbjct: 270 DTRGLIRVHQFDKVELVKFTKP--EDSYAELEELTANAEEILQKLELPYRVVLLCTGDLG 327

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            +AAK  DLE W P    +RE+ SCSNC  +Q+RR  +RY    + + K E VH LN + 
Sbjct: 328 FSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRY--RDEGDGKPELVHTLNGSG 385

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
            A  R + AILE +Q   G V IP+ LR +
Sbjct: 386 LAVGRTLVAILENYQQADGSVTIPEVLRPY 415

Length = 425

>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  212 bits (542), Expect = 4e-60
 Identities = 75/151 (49%), Positives = 102/151 (67%), Gaps = 5/151 (3%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DTRG+ RVHQF+KVE  V+T P  +ES + L+EM+ N+EE   +L + YRVVN+ +G L 
Sbjct: 273 DTRGLIRVHQFDKVELVVITKP--EESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLG 330

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            +AAKK DLE W PG   +RE+ SCSNC  +Q+RRL +RY   ++   K EFVH LN + 
Sbjct: 331 FSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKEE--GKREFVHTLNGSG 388

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFV 452
            A  R + AILE +Q E G V+IP+ LR ++
Sbjct: 389 LAVGRTLVAILENYQQEDGSVKIPEVLRPYM 419

Length = 429

>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase

 Score =  206 bits (526), Expect = 3e-58
 Identities = 75/150 (50%), Positives = 97/150 (64%), Gaps = 5/150 (3%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DT+G+ RVHQF KVE      P  +ES + L+EM  ++E+   +L + YRVVN+ SG L 
Sbjct: 272 DTKGLIRVHQFNKVELVKFCKP--EESAEELEEMTSDAEQILQELELPYRVVNLCSGDLG 329

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            +AAKK DLE W PG   +RE+ SCSNC  +Q+RRL +RY    K   K ++VH LN TA
Sbjct: 330 FSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNK--GKNKYVHTLNGTA 387

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
            A  R I AILE +QTE G V IP+ LRK+
Sbjct: 388 LAIGRTIVAILENYQTEDGSVEIPEVLRKY 417

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418

>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase

 Score =  178 bits (454), Expect = 6e-48
 Identities = 88/207 (42%), Positives = 124/207 (59%), Gaps = 22/207 (10%)

Query: 20  DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKV 79
           D+ LI T+E P+  +H DS L E++LP++Y+  S CFR E G+ G  TRG++RVHQF KV
Sbjct: 287 DQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKV 346

Query: 80  EQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFP 139
           E FV+  P  +ES    +E+IQ  E+ +  LG+ ++ +++ +  L   A +K D+EAW P
Sbjct: 347 EMFVICRP--EESESFHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMP 404

Query: 140 GSGAFRELVSCSNCLDYQSRRLLVRY-----------------GQTK--QKIYATACATT 180
           G G + E+ S SNC DYQSRRL +RY                 G TK    + ATACA  
Sbjct: 405 GLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVP 464

Query: 181 RVICAILETHQTETG-VRIPDCLRKFV 206
           R+I  +LE +Q E G V IP+ LR F+
Sbjct: 465 RMIVCLLENYQQEDGSVVIPEPLRPFM 491

Length = 502

>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase

 Score =  142 bits (360), Expect = 1e-35
 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 13/160 (8%)

Query: 304 TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNH 363
           TRG++RVHQF KVE FV+  P + ES+   +E+IQ  E+ +  LG+ ++ +++ +  L  
Sbjct: 334 TRGLYRVHQFSKVEMFVICRPEESESFH--EELIQIEEDLFTSLGLHFKTLDMATADLGA 391

Query: 364 AAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRY-------GQTKKMNEKI---E 413
            A +K D+EAW PG G + E+ S SNC  YQSRRL +RY          KK    +   +
Sbjct: 392 PAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTK 451

Query: 414 FVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFV 452
           FVH LNATACA  R+I  +LE +Q E G V IP+ LR F+
Sbjct: 452 FVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFM 491

Length = 502

>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T)

 Score =  123 bits (310), Expect = 3e-32
 Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)

Query: 14  EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
           +    ++ YL  T+E  I  + ++  L    LP++   +  CFR E     R  RG+ RV
Sbjct: 50  KDRGGEELYLRPTAEVGITRLFKNEILSYRELPLKLYQIGPCFRYEA----RPRRGLGRV 105

Query: 74  HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
            +F +V+  +  +P  ++S + L+E+++ +EE   DLG+ YRVV   +G L  +A+K+ D
Sbjct: 106 REFTQVDAEIFGTP--EQSEEELEELLKLAEEILQDLGLPYRVVLATTGDLGGSASKEGD 163

Query: 134 LEAWFPG 140
           LEAW P 
Sbjct: 164 LEAWLPA 170

Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171

>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T)

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
             RG+ RV +F +V+  +  +P  ++S + L+E+++ +EE   DLG+ YRVV   +G L 
Sbjct: 98  PRRGLGRVREFTQVDAEIFGTP--EQSEEELEELLKLAEEILQDLGLPYRVVLATTGDLG 155

Query: 363 HAAAKKLDLEAWFPG 377
            +A+K+ DLEAW P 
Sbjct: 156 GSASKEGDLEAWLPA 170

Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171

>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase

 Score = 82.8 bits (205), Expect = 2e-16
 Identities = 30/43 (69%), Positives = 33/43 (76%)

Query: 533 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 575
           E DDKYLIATSEQP+CA HR  W+    LPIRY G STCFR+E
Sbjct: 226 EGDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKE 268

Length = 448

>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain

 Score = 79.1 bits (196), Expect = 7e-16
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 515 REVIGKGEKVGDSAPEKDEL-----DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS 569
           +EV+   E  G      ++L     +D YLIAT+E P+ A+HRD  L E  LP++Y G S
Sbjct: 82  KEVM---EGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYS 138

Query: 570 TCFRQECDAG 579
            CFR+E  + 
Sbjct: 139 PCFRKEAGSA 148

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. Length = 297

>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain

 Score = 77.4 bits (191), Expect = 9e-16
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 19/191 (9%)

Query: 10  DSAPEKDELDDKYLIA-TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTR 68
                ++  D   ++   + +PI  +     L   +LP+R   +  CFR E        R
Sbjct: 51  FEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHE----PSGRR 106

Query: 69  GIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGA----- 123
           G+ RV +F +VE  V   P + E  +   E ++ +EE   +LG+  RVV           
Sbjct: 107 GLMRVREFRQVEYVVFGEPEEAEEER--REWLELAEEIARELGLPVRVVVADDPFFGRGG 164

Query: 124 ---LNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATAC--- 177
              L+      ++ E   P  G  +E    S  +         +  +       T C   
Sbjct: 165 KRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGA 224

Query: 178 -ATTRVICAIL 187
               R++ A+L
Sbjct: 225 GGEERLVLALL 235

This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 235

>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only]

 Score = 80.4 bits (198), Expect = 2e-15
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 53/166 (31%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
           +C  C    +++ N IV CD C + VH+ CYG+Q                W C  C  G 
Sbjct: 195 ICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGF----------WLCRKCIYGE 244

Query: 753 AE-PTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETD 811
            +   C  CP                                           G FK+T 
Sbjct: 245 YQIRCCSFCP----------------------------------------SSDGAFKQTS 264

Query: 812 VGKWVHLVCALYIPGVAFGEVDRLSNV-TLFEMPYSRWGAKSCALC 856
            G+W H++CA++ P ++FG +     +  +  +  SRW    C +C
Sbjct: 265 DGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKL-GCLIC 309

Length = 669

>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional

 Score = 64.7 bits (159), Expect = 1e-10
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
           K E DD YLI T+E P+  +HRD  L E  LP++Y   S CFR E  AG
Sbjct: 219 KIEDDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSE--AG 265

Length = 425

>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase

 Score = 63.5 bits (155), Expect = 3e-10
 Identities = 22/45 (48%), Positives = 27/45 (60%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 575
           K E  D YLI T+E P+  +HR+  L E  LPI+Y   S CFR E
Sbjct: 221 KLEDTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSE 265

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418

>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 803 RGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALC 856
           RGG  K+T  G+WVH++CA+++P V FG    +  + +  +P  RW    C  C
Sbjct: 9   RGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPIDVSRIPKERW-KLKCCFC 61

Length = 109

>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 59.1 bits (144), Expect = 7e-09
 Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 533 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
           E  D YLI T+E P+  +HRD  L E  LPI+Y   S CFR E  AG
Sbjct: 224 EDPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSE--AG 268

Length = 429

>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 13/149 (8%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
             E ++   +  + +P       S +    LP+R   +   FR E        RG+ RV 
Sbjct: 46  GAENEEDLYLRPTLEPGLVRLFVSHI--RKLPLRLAEIGPAFRNE-----GGRRGLRRVR 98

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGI---AYRVVNIVSGALNHAAAKK 131
           +F ++E  V     ++ S    +E+I+ +EE    LGI      V           A   
Sbjct: 99  EFTQLEGEVFGEDGEEASEF--EELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPG 156

Query: 132 LDLEAWFPGSGAFRELVSCSNCLDYQSRR 160
            ++E   P  G   E+ S     D Q+R 
Sbjct: 157 FEIEVDHP-EGRGLEIGSGGYRQDEQARA 184

Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211

>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T)

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 530 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 575
           +    ++ YL  T+E  I  + ++  L    LP++   +  CFR E
Sbjct: 50  KDRGGEELYLRPTAEVGITRLFKNEILSYRELPLKLYQIGPCFRYE 95

Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171

>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase

 Score = 49.2 bits (117), Expect = 1e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 536 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDA 578
           D+ LI T+E P+  +H DS L E++LP++Y+  S CFR E  A
Sbjct: 287 DQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGA 329

Length = 502

>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 257 RDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLD------------- 303
              RG+ RV +F +VE  V   P + E  +   E ++ +EE   +L              
Sbjct: 103 SGRRGLMRVREFRQVEYVVFGEPEEAEEER--REWLELAEEIARELGLPVRVVVADDPFF 160

Query: 304 --TRGIFRVHQFEKVEQFVLTSPHDDESWKT 332
                       E V +F L  P    + +T
Sbjct: 161 GRGGKRGLDAGRETVVEFELLLPLPGRAKET 191

This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 235

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079
            C +C    D   + +CD C  +YH  CL PPLL      K
Sbjct: 2    CSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGK 41

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 576 CDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHA 618
           C    CR  FHVTCA+  G L     +       F ++C  H 
Sbjct: 51  CCVKNCRRAFHVTCAREAGCL----FQFDGDNGKFKSYCPKHR 89

The members of this family are annotated as containing PHD domain, but the zinc-binding region here is not typical of PHD domains. The conformation here is a well-conserved cysteine-histidine rich region spanning 90 residues, where the Cys and His are arranged as HxxC(31)CxxC(6)CxxCxxxxCxxxxHxxC (21)CxxH. Length = 89

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
            C +C    D   +  CD C  ++HLACL PPL      
Sbjct: 2    CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIP 39

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|201356 pfam00628, PHD, PHD-finger

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 8/59 (13%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
            C VC     D   E++ CD C    H  C G                  W+C  C+  
Sbjct: 1   YCAVCGKVDDD--GELLLCDGCDRWFHLACLG------PPLEPEEIPEGEWYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51

>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 10/43 (23%)

Query: 706 NEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESC 748
           N ++ C  C V VH  CYGV +           S  PW C  C
Sbjct: 1   NPLLVCSKCSVAVHASCYGVPEL----------SDGPWLCRRC 33

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 33

>gnl|CDD|214584 smart00249, PHD, PHD zinc finger

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESC 748
            C VC   + DD  E+++CD C    H+ C G                  W+C  C
Sbjct: 1   YCSVC--GKPDDGGELLQCDGCDRWYHQTCLGPPLLEEE-------PDGKWYCPKC 47

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the RING finger and the FYVE finger. It is not yet known if PHD fingers have a common molecular function. Several reports suggest that it can function as a protein-protein interacton domain and it was recently demonstrated that the PHD finger of p300 can cooperate with the adjacent BROMO domain in nucleosome binding in vitro. Other reports suggesting that the PHD finger is a ubiquitin ligase have been refuted as these domains were RING fingers misidentified as PHD fingers. Length = 47

>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 575 ECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLH 617
           +C  G C+T FHVTCA+  G+  E       Q     A+C+ H
Sbjct: 70  QCSYGRCQTSFHVTCARAAGVYMEIEDWPNLQ---VIAYCQKH 109

Length = 109

>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 298 FYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI---AYRVV 354
           F  +   RG+ RV +F ++E  V     ++ S    +E+I+ +EE    LGI      V 
Sbjct: 85  FRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEF--EELIELTEELLRALGIKLDIVFVE 142

Query: 355 NIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEF 414
                     A    ++E   P  G   E+ S       Q+R   + +        +  +
Sbjct: 143 KTPGEFSPGGAGPGFEIEVDHP-EGRGLEIGSGGYRQDEQARAADLYFLDE---ALEYRY 198

Query: 415 VHMLN 419
              + 
Sbjct: 199 PPTIG 203

Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1083
KOG2509|consensus	455		100.0
KOG0957|consensus	707		100.0
PLN02678	448	seryl-tRNA synthetase	100.0
COG0172	429	SerS Seryl-tRNA synthetase [Translation, ribosomal	100.0
PLN02320	502	seryl-tRNA synthetase	100.0
KOG2509|consensus	455		100.0
PRK05431	425	seryl-tRNA synthetase; Provisional	100.0
PLN02678	448	seryl-tRNA synthetase	100.0
COG0172	429	SerS Seryl-tRNA synthetase [Translation, ribosomal	100.0
PLN02320	502	seryl-tRNA synthetase	100.0
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	100.0
PRK05431	425	seryl-tRNA synthetase; Provisional	100.0
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	100.0
cd00770	297	SerRS_core Seryl-tRNA synthetase (SerRS) class II	100.0
cd00770	297	SerRS_core Seryl-tRNA synthetase (SerRS) class II	100.0
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	100.0
COG0442	500	ProS Prolyl-tRNA synthetase [Translation, ribosoma	100.0
cd00779	255	ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla	100.0
PRK09194	565	prolyl-tRNA synthetase; Provisional	100.0
PRK00960	517	seryl-tRNA synthetase; Provisional	100.0
KOG2324|consensus	457		100.0
cd00772	264	ProRS_core Prolyl-tRNA synthetase (ProRS) class II	100.0
KOG0954|consensus	893		100.0
cd00779	255	ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla	100.0
cd00778	261	ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS)	100.0
cd00772	264	ProRS_core Prolyl-tRNA synthetase (ProRS) class II	100.0
PRK08661	477	prolyl-tRNA synthetase; Provisional	100.0
KOG0956|consensus	900		99.98
PRK00960	517	seryl-tRNA synthetase; Provisional	99.98
TIGR00408	472	proS_fam_I prolyl-tRNA synthetase, family I. Proly	99.97
cd00778	261	ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS)	99.97
KOG0955|consensus	1051		99.95
COG5141	669	PHD zinc finger-containing protein [General functi	99.95
PRK12325	439	prolyl-tRNA synthetase; Provisional	99.95
TIGR00415	520	serS_MJ seryl-tRNA synthetase, Methanococcus janna	99.94
KOG4163|consensus	551		99.94
PRK08661	477	prolyl-tRNA synthetase; Provisional	99.91
TIGR00415	520	serS_MJ seryl-tRNA synthetase, Methanococcus janna	99.91
PRK03991	613	threonyl-tRNA synthetase; Validated	99.9
PF00587	173	tRNA-synt_2b: tRNA synthetase class II core domain	99.89
TIGR00408	472	proS_fam_I prolyl-tRNA synthetase, family I. Proly	99.89
KOG1244|consensus	336		99.88
cd00670	235	Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t	99.87
cd00771	298	ThrRS_core Threonyl-tRNA synthetase (ThrRS) class	99.85
PLN02837	614	threonine-tRNA ligase	99.85
PRK03991	613	threonyl-tRNA synthetase; Validated	99.78
cd00670	235	Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t	99.78
cd00771	298	ThrRS_core Threonyl-tRNA synthetase (ThrRS) class	99.77
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.75
PRK04173	456	glycyl-tRNA synthetase; Provisional	99.75
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	99.69
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.68
PF00587	173	tRNA-synt_2b: tRNA synthetase class II core domain	99.68
PLN02837	614	threonine-tRNA ligase	99.68
PRK12325	439	prolyl-tRNA synthetase; Provisional	99.63
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	99.62
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.55
PLN02908	686	threonyl-tRNA synthetase	99.53
PRK09194	565	prolyl-tRNA synthetase; Provisional	99.51
PRK04173	456	glycyl-tRNA synthetase; Provisional	99.49
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	99.47
cd00774	254	GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik	99.35
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	99.34
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.34
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.26
KOG1080|consensus	1005		99.22
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.19
cd00768	211	class_II_aaRS-like_core Class II tRNA amino-acyl s	99.19
KOG2324|consensus	457		99.18
PLN02908	686	threonyl-tRNA synthetase	99.16
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.14
COG0442	500	ProS Prolyl-tRNA synthetase [Translation, ribosoma	99.08
KOG1512|consensus	381		99.06
KOG0957|consensus	707		98.96
PRK07080	317	hypothetical protein; Validated	98.94
PLN02734	684	glycyl-tRNA synthetase	98.92
TIGR00389	551	glyS_dimeric glycyl-tRNA synthetase, dimeric type.	98.89
PRK14894	539	glycyl-tRNA synthetase; Provisional	98.85
KOG1244|consensus	336		98.81
COG0423	558	GRS1 Glycyl-tRNA synthetase (class II) [Translatio	98.79
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	98.78
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	98.73
cd00768	211	class_II_aaRS-like_core Class II tRNA amino-acyl s	98.72
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	98.68
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	98.58
PRK07080	317	hypothetical protein; Validated	98.26
KOG4163|consensus	551		98.12
PRK14894	539	glycyl-tRNA synthetase; Provisional	98.03
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	97.97
KOG4443|consensus	694		97.93
cd00773	261	HisRS-like_core Class II Histidinyl-tRNA synthetas	97.93
PLN02734	684	glycyl-tRNA synthetase	97.9
KOG0825|consensus	1134		97.86
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.84
TIGR00389	551	glyS_dimeric glycyl-tRNA synthetase, dimeric type.	97.73
KOG4443|consensus	694		97.65
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.65
TIGR00442	397	hisS histidyl-tRNA synthetase. This model finds a	97.49
PRK09537	417	pylS pyrolysyl-tRNA synthetase; Reviewed	97.44
cd00774	254	GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik	97.42
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.41
KOG4323|consensus	464		97.41
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	97.4
KOG1637|consensus	560		97.39
KOG4323|consensus	464		97.35
PRK00037	412	hisS histidyl-tRNA synthetase; Reviewed	97.33
KOG1512|consensus	381		97.33
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.29
CHL00201	430	syh histidine-tRNA synthetase; Provisional	97.21
COG0423	558	GRS1 Glycyl-tRNA synthetase (class II) [Translatio	97.19
PF01409	247	tRNA-synt_2d: tRNA synthetases class II core domai	97.03
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	96.89
COG0124	429	HisS Histidyl-tRNA synthetase [Translation, riboso	96.89
PRK12420	423	histidyl-tRNA synthetase; Provisional	96.85
PLN02530	487	histidine-tRNA ligase	96.76
KOG4299|consensus	613		96.63
KOG0825|consensus	1134		96.6
TIGR02367	453	PylS pyrrolysyl-tRNA synthetase. PylS is the archa	96.58
TIGR00470	533	sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam	96.27
KOG1637|consensus	560		96.16
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	96.15
COG0016	335	PheS Phenylalanyl-tRNA synthetase alpha subunit [T	95.76
KOG0955|consensus	1051		95.7
KOG1245|consensus	1404		95.59
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	95.58
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	95.27
KOG2298|consensus	599		95.21
TIGR00443	314	hisZ_biosyn_reg ATP phosphoribosyltransferase, reg	95.11
cd00669	269	Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl	95.09
PRK12292	391	hisZ ATP phosphoribosyltransferase regulatory subu	94.41
PRK00488	339	pheS phenylalanyl-tRNA synthetase subunit alpha; V	93.88
PRK09537	417	pylS pyrolysyl-tRNA synthetase; Reviewed	93.85
KOG0383|consensus	696		93.66
PRK12293	281	hisZ ATP phosphoribosyltransferase regulatory subu	93.37
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	93.01
PLN02972	763	Histidyl-tRNA synthetase	92.52
PRK12421	392	ATP phosphoribosyltransferase regulatory subunit;	92.48
COG5141	669	PHD zinc finger-containing protein [General functi	91.45
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.21
PRK12295	373	hisZ ATP phosphoribosyltransferase regulatory subu	90.99
KOG4299|consensus	613		90.41
TIGR00468	294	pheS phenylalanyl-tRNA synthetase, alpha subunit.	89.99
KOG0954|consensus	893		89.69
KOG1973|consensus	274		89.55
PF13393	311	tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI	89.31
KOG1084|consensus	375		88.82
TIGR00459	583	aspS_bact aspartyl-tRNA synthetase, bacterial type	88.59
PLN02903	652	aminoacyl-tRNA ligase	88.49
PRK09350	306	poxB regulator PoxA; Provisional	88.48
KOG0956|consensus	900		87.68
COG0173	585	AspS Aspartyl-tRNA synthetase [Translation, riboso	87.29
PRK00476	588	aspS aspartyl-tRNA synthetase; Validated	84.93
KOG1246|consensus	904		83.44
cd00773	261	HisRS-like_core Class II Histidinyl-tRNA synthetas	83.42
PRK12820	706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	82.52
KOG1973|consensus	274		81.28
PRK00484	491	lysS lysyl-tRNA synthetase; Reviewed	80.25

>KOG2509|consensus

Probab=100.00  E-value=2.1e-71  Score=617.86  Aligned_cols=258  Identities=45%  Similarity=0.720  Sum_probs=228.7

Q ss_pred             ccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec-
Q psy11602        190 HQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF-  268 (1083)
Q Consensus       190 ~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf-  268 (1083)
                      |..++|+.|..||.+|.++.+. .+||+|+.+|.++..|++.+++                +...+.+   .++-+-+. 
T Consensus       179 yl~g~~a~LeqALi~yal~~l~-~kGy~pl~~P~i~rkeVm~~cg----------------~~~~~d~---~~~y~ld~~  238 (455)
T KOG2509|consen  179 YLKGAGAFLEQALINYALDFLN-AKGYTPLTTPDILRKEVMQKCG----------------QLPRFDE---EQYYVLDGG  238 (455)
T ss_pred             EEcCHHHHHHHHHHHHHHHHHH-HcCCccccCchhhhHHHHHHhc----------------cCcCCCc---ceEEeecCC
Confidence            4556778889999999999985 8999999999999977776665                2222222   12222221 


Q ss_pred             -c----ceEEEEeeCCCCCcch--hhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHH
Q psy11602        269 -E----KVEQFVLTSPHDDESW--KMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDE  335 (1083)
Q Consensus       269 -d----~~~~~~~~~~~~~~s~--~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~  335 (1083)
                       +    .|++++++++|+|+-.  ..|| ++++.|.|||.     |+|||||||||||+|||||++|+|  ++||++|+|
T Consensus       239 ~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~P--e~S~~~~eE  316 (455)
T KOG2509|consen  239 DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGP--EDSWEMLEE  316 (455)
T ss_pred             ccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCc--chhHHHHHH
Confidence             1    7899999999999732  2466 88889999996     999999999999999999999999  569999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeE
Q psy11602        336 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFV  415 (1083)
Q Consensus       336 ~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~  415 (1083)
                      |++++|+||++||||||||+|||+|||.+|++||||||||||+++|+||+|||||||||||||+|||+..|.++++.+||
T Consensus       317 mi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yv  396 (455)
T KOG2509|consen  317 MINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYV  396 (455)
T ss_pred             HHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887778889999


Q ss_pred             EeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCCCChh
Q psy11602        416 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEE  474 (1083)
Q Consensus       416 htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p~D~e  474 (1083)
                      ||||||+|||+|+|||||||||++|||.||++||||||+     .++|||++++|++.+
T Consensus       397 HtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~-----~~~ip~~k~~p~~~~  450 (455)
T KOG2509|consen  397 HTLNGTACATPRALCAILENYQTEDGIEVPEVLRPYMGG-----QEFIPFVKPAPKNLT  450 (455)
T ss_pred             eecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhhcCC-----cccccccccCCcccc
Confidence            999999999999999999999999999999999999997     467999999999976

>KOG0957|consensus

Probab=100.00  E-value=6.8e-70  Score=602.90  Aligned_cols=351  Identities=45%  Similarity=0.820  Sum_probs=318.6

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCceeecCCCCcccccccc
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLRGLF  772 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~~g~~~~~~~~  772 (1083)
                      +|+||++.++++.++||+||+|||.||++|||+.+..++.++.+.+++.+|||++|..+...|.|.|||+          
T Consensus       121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn----------  190 (707)
T KOG0957|consen  121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPN----------  190 (707)
T ss_pred             EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCC----------
Confidence            9999999999999999999999999999999999888888999999999999999999999999999999          


Q ss_pred             ccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeeecCccCCcCCCc
Q psy11602        773 ENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKS  852 (1083)
Q Consensus       773 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~r~~~~~  852 (1083)
                                                    .+|+||.|+.|+|||++||||+|||.|++.+++.+|++.++.++.|++++
T Consensus       191 ------------------------------~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~  240 (707)
T KOG0957|consen  191 ------------------------------RFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKT  240 (707)
T ss_pred             ------------------------------cCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccch
Confidence                                          89999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCceeEEeCCCCCCccceeceeeccCC--------------------------------------------
Q psy11602        853 CALCPDESYARTELALQSPPVNCVPTLLVYMEVVFP--------------------------------------------  888 (1083)
Q Consensus       853 C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~--------------------------------------------  888 (1083)
                      |++|..+.++|+|+||.|+..-|..+||+.+.+.++                                            
T Consensus       241 Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~GlLvea~~e~DiAdpfya~CK~Ht~r~~~K~~rrny~~l~~~~~~  320 (707)
T KOG0957|consen  241 CSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGLLVEATDENDIADPFYAFCKKHTNRDNLKPYRRNYDDLEKSEAR  320 (707)
T ss_pred             hccccchhhhhcceeeeccchhhhhhhhhhHHhhhcceeeccccccchhhHHHHHHhhcchhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999984322111                                            


Q ss_pred             -----------------------CCccchhhhhHHhhhhccCCCCCCCCCCcCcCCCCCCcHHHHHHHHHHHHHhcccch
Q psy11602        889 -----------------------QPPQRKLGKYKVKYVDMKSLRNPPWVPTQKLARPLTSSATLCRALLHKARLMEVDTG  945 (1083)
Q Consensus       889 -----------------------~~~~~~~~~~r~~y~~~~~~~~~~w~~~~k~~r~l~~~aea~r~~~~Ka~lmGis~~  945 (1083)
                                             ..++..+.+++.+|+.++...|.+|+|.+|++|+|++||+++|++++||++||++++
T Consensus       321 r~~~k~~L~~~e~~~~p~~~eaqari~~~l~kv~~k~~~~k~~~p~~wvp~~K~~RlLtsSAsa~rrl~~KAE~mg~s~~  400 (707)
T KOG0957|consen  321 RITVKRRLRSGELEKNPQKKEAQARIREELDKVIEKECKNKPKGPISWVPKPKQARLLTSSASAFRRLETKAEEMGLSRK  400 (707)
T ss_pred             HHHHHHHHHhcccccCCCccHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccchHHHHHHHHHHHHHhcccHh
Confidence                                   014455667778888888899999999999999999999999999999999999999


Q ss_pred             hhhhhhHhhhhhhhcccccCCCcccchhhhhhhhcccchhhhhHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh-------
Q psy11602        946 AVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGKLTREQRALAVENDSLQSEQSRLQKTYDELVY------- 1018 (1083)
Q Consensus       946 ~~e~~~~~l~s~~dv~rk~~Lp~~Fs~efv~Yy~dR~~rv~~lk~~l~~l~~~n~~L~~eqskL~~~y~~~~~------- 1018 (1083)
                      .|+.++++.....|++++||+||+|+.||++||.+|+.||....+++.++...+..|..+|.+|+.+|+....       
T Consensus       401 ~f~~~ead~~~~id~r~k~Hv~pafs~efi~yy~~rn~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~  480 (707)
T KOG0957|consen  401 EFRQREADPFFNIDLRSKSHVPPAFSKEFIEYYTKRNERMSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKS  480 (707)
T ss_pred             hhcccccCccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998875       


Q ss_pred             ---------------cccc--------cCCCC--------Cc-----cccc---------cccccccccccCCCCCCcce
Q psy11602       1019 ---------------MEVV--------FPQPP--------LS-----KQAW---------GVLSHKCGLCHLSHDPHTMA 1053 (1083)
Q Consensus      1019 ---------------~gv~--------~p~~~--------l~-----~~~~---------~~~~~~c~~C~~~~~~~~~~ 1053 (1083)
                                     +|..        .|++.        ++     +...         -...+.|.||+++.|+|.++
T Consensus       481 ~~~~L~~~~~~~~~llgqi~~~i~kl~~pl~e~~pks~~p~~~~~~rk~g~~st~~~s~~~a~~ysCgiCkks~dQHll~  560 (707)
T KOG0957|consen  481 SQKHLVERFSANEELLGQILTSIEKLHQPLTELGPKSGLPLSDFNNRKSGSRSTPAISAPKAMNYSCGICKKSTDQHLLT  560 (707)
T ss_pred             hHHHHHHHhhhHHHHHHhhhhhHHHhcchhhhcCCccCCcCcccccccccccCCcccccccccceeeeeeccchhhHHHh
Confidence                           2211        12211        11     1111         14578999999999999999


Q ss_pred             ecCccCCCccccCCCCCCCCCCCCCcCCCC
Q psy11602       1054 KCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083 (1083)
Q Consensus      1054 ~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~~W 1083 (1083)
                      +||+|++.||++||+|||+++||+++.+||
T Consensus       561 ~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gW  590 (707)
T KOG0957|consen  561 QCDTCHLHYHLGCLSPPLTRLPKKNKNFGW  590 (707)
T ss_pred             hcchhhceeeccccCCccccCcccccCcce
Confidence            999999999999999999999999999999

>PLN02678 seryl-tRNA synthetase

Probab=100.00  E-value=1.3e-63  Score=578.83  Aligned_cols=245  Identities=46%  Similarity=0.713  Sum_probs=218.1

Q ss_pred             ccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeee--
Q psy11602        190 HQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQ--  267 (1083)
Q Consensus       190 ~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~q--  267 (1083)
                      |..++|++|..+|..|+.+.+. ..||++|.+|++++                ...+.+.++.+.+.+   .||++..  
T Consensus       168 ~l~g~ga~L~~AL~~y~ld~~~-~~Gy~~V~~P~lv~----------------~~~~~~sG~~~~f~e---~my~i~~~~  227 (448)
T PLN02678        168 YLKGAGVLLNQALINFGLAFLR-KRGYTPLQTPFFMR----------------KDVMAKCAQLAQFDE---ELYKVTGEG  227 (448)
T ss_pred             EECCHHHHHHHHHHHHHHHHHH-HcCCEEEECccccc----------------HHHHhhcCCcccchh---cCceecCCC
Confidence            3556789999999999999885 78999999999999                455566667777777   5777743  


Q ss_pred             cc----ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHH
Q psy11602        268 FE----KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDE  335 (1083)
Q Consensus       268 fd----~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~  335 (1083)
                      .+    ++++++++..|.++  |+++|| ++++.+.|||+     |++++||||||||+|||+|++|+|++.+|+++||+
T Consensus       228 ~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~  307 (448)
T PLN02678        228 DDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEE  307 (448)
T ss_pred             CceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHH
Confidence            12    78888899877765  468899 99999999996     67999999999999999999999964349999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeE
Q psy11602        336 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFV  415 (1083)
Q Consensus       336 ~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~  415 (1083)
                      |++++++||++||||||||+|||||||++|++||||||||||+++|+||||||||+|||||||+|||++.++.+++.+||
T Consensus       308 ~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~v  387 (448)
T PLN02678        308 MLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYV  387 (448)
T ss_pred             HHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999653224568999


Q ss_pred             EeecccccchhHHHHHHHhhccCCCceecCccccccCCC
Q psy11602        416 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA  454 (1083)
Q Consensus       416 htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~  454 (1083)
                      ||||||||||+|+|+|||||||++|||+||++||||||+
T Consensus       388 HTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g  426 (448)
T PLN02678        388 HLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGG  426 (448)
T ss_pred             EecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCC
Confidence            999999999999999999999999999999999999964

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-63  Score=567.03  Aligned_cols=240  Identities=38%  Similarity=0.609  Sum_probs=221.0

Q ss_pred             cCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-
Q psy11602        191 QTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-  269 (1083)
Q Consensus       191 ~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-  269 (1083)
                      ..+.|++|.+||.+||++.++ ++||+++.+|++|+                .+.+.++++++.+.+   ++|++...+ 
T Consensus       169 ~~~~~a~L~rAL~~f~ld~~~-~~Gf~e~~~P~lv~----------------~e~m~gtgqlpkf~e---~~y~v~~~~~  228 (429)
T COG0172         169 YKGKGARLERALIQFMLDLHT-KHGFTEVLPPYLVN----------------LESMFGTGQLPKFEE---DLYKVEDPDL  228 (429)
T ss_pred             EcCHHHHHHHHHHHHHHHHHH-HcCceEeeCceeec----------------HHHhhccCCCCCCcc---cceEecCCCE
Confidence            456789999999999999996 99999999999999                666788889999999   699997665 


Q ss_pred             ---ceEEEEeeCCCCCcchh--hhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602        270 ---KVEQFVLTSPHDDESWK--MLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       270 ---~~~~~~~~~~~~~~s~~--~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~  338 (1083)
                         +++++++++.|.++=..  +|| .+.+.+.|||.     |+|||||||||||+|||||.||+|  |+|++.||+|++
T Consensus       229 ~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~P--e~S~~~~E~m~~  306 (429)
T COG0172         229 YLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKP--EESEEELEEMLG  306 (429)
T ss_pred             EEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCc--chhHHHHHHHHH
Confidence               99999999999988332  256 55666679985     999999999999999999999999  689999999999


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEee
Q psy11602        339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHML  418 (1083)
Q Consensus       339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htl  418 (1083)
                      +||+||+.|+||||||++|||||||+|+||||||||||++++|+||||||||+||||||++|||++..  .++.+|||||
T Consensus       307 ~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~--~~k~~~vhTL  384 (429)
T COG0172         307 NAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKE--EGKREFVHTL  384 (429)
T ss_pred             HHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHHHhccccccc--CCCcEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999998753  4568999999


Q ss_pred             cccccchhHHHHHHHhhccCCCc-eecCccccccCCC
Q psy11602        419 NATACATTRVICAILETHQTETG-VRIPDCLRKFVPA  454 (1083)
Q Consensus       419 n~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~  454 (1083)
                      ||||||++|+|+|||||||++|| |+||++|+||||+
T Consensus       385 NGsglA~~R~l~AilENyq~~dG~v~IPevL~~y~gg  421 (429)
T COG0172         385 NGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPYMGG  421 (429)
T ss_pred             cchHHHHHHHHHHHHHcccCCCCCeeccHHHHhhCCc
Confidence            99999999999999999999999 9999999999985

>PLN02320 seryl-tRNA synthetase

Probab=100.00  E-value=1.8e-61  Score=562.56  Aligned_cols=243  Identities=32%  Similarity=0.531  Sum_probs=211.4

Q ss_pred             cCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-
Q psy11602        191 QTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-  269 (1083)
Q Consensus       191 ~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-  269 (1083)
                      ..++|++|..+|..|+.+.+. .+||++|.+|++|+.+.+.+.                ++.+...++  .+|++...+ 
T Consensus       228 L~g~~a~Le~ALi~f~ld~~~-~~Gy~eV~tP~lv~~~l~~~s----------------G~~p~~e~~--~~y~ie~ed~  288 (502)
T PLN02320        228 LKNEAVLLEMALVNWTLSEVM-KKGFTPLTTPEIVRSSVVEKC----------------GFQPRGDNT--QVYSIDGSDQ  288 (502)
T ss_pred             eCCHHHHHHHHHHHHHHHHHH-HcCCEEEECCccchHHHHHhc----------------CCCcccccC--ceeEECCCce
Confidence            455567788899999999885 789999999999995555444                444443331  345553322 


Q ss_pred             ---ceEEEEeeCCCCCcc--hhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602        270 ---KVEQFVLTSPHDDES--WKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       270 ---~~~~~~~~~~~~~~s--~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~  338 (1083)
                         .+++++++.+|.++-  +++|| ++...+.|||+     |++++||||||||+|||+|+||+|  ++|+++|++|++
T Consensus       289 ~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~p--eqs~~e~e~ll~  366 (502)
T PLN02320        289 CLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRP--EESESFHEELIQ  366 (502)
T ss_pred             EEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECH--HHHHHHHHHHHH
Confidence               678888888888875  68999 88888889996     789999999999999999999999  789999999999


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEeccc--------C--C
Q psy11602        339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTK--------K--M  408 (1083)
Q Consensus       339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~--------~--~  408 (1083)
                      ++++||+.||||||||+||+||||++|++||||||||||+++|+||||||||+|||||||+|||++.+        +  .
T Consensus       367 ~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~~k~~  446 (502)
T PLN02320        367 IEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKGKGS  446 (502)
T ss_pred             HHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcccceecccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999631        1  1


Q ss_pred             CCceeeEEeecccccchhHHHHHHHhhccCCCc-eecCccccccCCC
Q psy11602        409 NEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPA  454 (1083)
Q Consensus       409 ~~~~~~~htln~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~  454 (1083)
                      .++.+||||||||||||+|+|+|||||||++|| |+||++|||||||
T Consensus       447 ~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g  493 (502)
T PLN02320        447 LGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGG  493 (502)
T ss_pred             CCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCC
Confidence            135799999999999999999999999999999 9999999999964

>KOG2509|consensus

Probab=100.00  E-value=1.8e-55  Score=490.47  Aligned_cols=203  Identities=63%  Similarity=1.110  Sum_probs=193.3

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++.||++|||++|+++|+++++...+||+||+++|+|||.|+|+||++++||||||||+|+|||.++.|+.  ||++|++
T Consensus       239 ~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~--S~~~~eE  316 (455)
T KOG2509|consen  239 DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPED--SWEMLEE  316 (455)
T ss_pred             ccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcch--hHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999985  9999999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceecc---CCC-----
Q psy11602         99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQ---TKQ-----  170 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~---~~~-----  170 (1083)
                      |+++.++||++||||||+|++|||+||++|+++||||||||+.+.|+||+|||||+|||||||.|||+.   .++     
T Consensus       317 mi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yv  396 (455)
T KOG2509|consen  317 MINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYV  396 (455)
T ss_pred             HHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCcccee
Confidence            999999999999999999999999999999999999999999999999999999999999999999994   333     


Q ss_pred             -ccccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchH
Q psy11602        171 -KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEE  228 (1083)
Q Consensus       171 -~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d  228 (1083)
                       ++|+|+||++|+|+|||||||+++|+.+|++|+|||+..     -|+|++.|.|+...
T Consensus       397 HtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~~-----~~ip~~k~~p~~~~  450 (455)
T KOG2509|consen  397 HTLNGTACATPRALCAILENYQTEDGIEVPEVLRPYMGGQ-----EFIPFVKPAPKNLT  450 (455)
T ss_pred             eecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhhcCCc-----ccccccccCCcccc
Confidence             299999999999999999999999999999999999651     28899999999844

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.1e-51  Score=481.29  Aligned_cols=240  Identities=34%  Similarity=0.571  Sum_probs=212.8

Q ss_pred             CCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--
Q psy11602        192 TETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--  269 (1083)
Q Consensus       192 ~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--  269 (1083)
                      .+.|++|..+|..|+.+.+....||.+|.+|++|+                ..+..+.++.+.+.+   .+|++...+  
T Consensus       166 ~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~----------------~~~~~~~G~~~~f~~---~ly~i~~~~~~  226 (425)
T PRK05431        166 KGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVN----------------EESMYGTGQLPKFEE---DLYKIEDDDLY  226 (425)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCCEEEecccccc----------------HHHHhhcCccccchh---hceEecCCCEE
Confidence            34577888899999988873268999999999999                444555667777777   578775322  


Q ss_pred             --ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602        270 --KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       270 --~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~  339 (1083)
                        ++.+++++..+.++  ||++|| ++++.+.|||.     |++++||+|||||+|||+|+||+|  ++|+++|++|+++
T Consensus       227 L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~--e~s~~~~~~~l~~  304 (425)
T PRK05431        227 LIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKP--EDSYAELEELTAN  304 (425)
T ss_pred             EEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECH--HHHHHHHHHHHHH
Confidence              55555666555555  789999 99999999996     579999999999999999999999  7899999999999


Q ss_pred             HHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeec
Q psy11602        340 SEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN  419 (1083)
Q Consensus       340 ~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln  419 (1083)
                      +++||+.||||||+|.+++||||++|+++||||||||++++|+||+|||||+||||||++|||++.+  +++..||||||
T Consensus       305 ~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~--~~~~~~~htln  382 (425)
T PRK05431        305 AEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEG--DGKPELVHTLN  382 (425)
T ss_pred             HHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCC--CCceeEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999762  45689999999


Q ss_pred             ccccchhHHHHHHHhhccCCCc-eecCccccccCCC
Q psy11602        420 ATACATTRVICAILETHQTETG-VRIPDCLRKFVPA  454 (1083)
Q Consensus       420 ~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~  454 (1083)
                      |||+|++|+|+|||||||+++| |+||++|+||||+
T Consensus       383 ~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~~~  418 (425)
T PRK05431        383 GSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG  418 (425)
T ss_pred             CchhhHHHHHHHHHHHCCCCCCcEECChhhhcccCC
Confidence            9999999999999999999999 9999999999974

>PLN02678 seryl-tRNA synthetase

Probab=100.00  E-value=3.1e-50  Score=467.22  Aligned_cols=191  Identities=67%  Similarity=1.122  Sum_probs=182.7

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ++++||+||||++++++|++++++|++|||||+++++|||.|+|++|++++||+|+|||+|+|+|.|+.|++.+|+++|+
T Consensus       227 ~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e  306 (448)
T PLN02678        227 GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHE  306 (448)
T ss_pred             CCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999997446999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---CC----
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---KQ----  170 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---~~----  170 (1083)
                      +|+++++.||+.||||||+|++|+||||++++++||||+|||+.++|+||+|||||+||||||++|||++.   ++    
T Consensus       307 ~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~  386 (448)
T PLN02678        307 EMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQY  386 (448)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999964   22    


Q ss_pred             --ccccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602        171 --KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPA  208 (1083)
Q Consensus       171 --~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~  208 (1083)
                        ++|+||+||+|+|+|||||||+.+||+||++|+|||++
T Consensus       387 vHTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym~g  426 (448)
T PLN02678        387 VHLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFMGG  426 (448)
T ss_pred             EEecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhcCC
Confidence              29999999999999999999999999999999999953

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6e-49  Score=448.33  Aligned_cols=189  Identities=49%  Similarity=0.852  Sum_probs=181.5

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +.+++|+||+|+||++|++++|+...+||++|+++|+|||+|+|++||+||||+|+|||.|+|+|.|+.|++  |++.++
T Consensus       225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~--S~~~~E  302 (429)
T COG0172         225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEE--SEEELE  302 (429)
T ss_pred             CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcch--hHHHHH
Confidence            348999999999999999999999999999999999999999999999999999999999999999999985  999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC-CC------
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT-KQ------  170 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~-~~------  170 (1083)
                      +|+...++|++.|+||||+|.+++||||++|++|||+|+|||+++.|.||+|||||+||||||++|||+.. ++      
T Consensus       303 ~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~~~k~~~vh  382 (429)
T COG0172         303 EMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKEEGKREFVH  382 (429)
T ss_pred             HHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHHHhcccccccCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999853 22      


Q ss_pred             ccccccccchhheeheeccccCCCe-eEecccccccccc
Q psy11602        171 KIYATACATTRVICAILETHQTETG-VRIPDCLRKFVPA  208 (1083)
Q Consensus       171 ~~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~  208 (1083)
                      ++|+||+|++|+|+|||||||+++| +.||++|.|||+.
T Consensus       383 TLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y~gg  421 (429)
T COG0172         383 TLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPYMGG  421 (429)
T ss_pred             eccchHHHHHHHHHHHHHcccCCCCCeeccHHHHhhCCc
Confidence            2999999999999999999999999 9999999999964

>PLN02320 seryl-tRNA synthetase

Probab=100.00  E-value=6.8e-49  Score=457.48  Aligned_cols=189  Identities=46%  Similarity=0.817  Sum_probs=181.4

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||+|.||+++++++++++++|||||+.+++|||.|+|++|++++||+|+|||+|+|+|.|+.|+  ++++.|+
T Consensus       285 ~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~pe--qs~~e~e  362 (502)
T PLN02320        285 GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPE--ESESFHE  362 (502)
T ss_pred             CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHH--HHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999996  4999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---------
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---------  168 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---------  168 (1083)
                      +|++.+++||+.||||||+|++++||||++|+++||||||||+.++|+||+|||||+||||||++|+|++.         
T Consensus       363 ~ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~  442 (502)
T PLN02320        363 ELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKK  442 (502)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcccceecccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999852         


Q ss_pred             -C-----C----ccccccccchhheeheeccccCCCe-eEecccccccccc
Q psy11602        169 -K-----Q----KIYATACATTRVICAILETHQTETG-VRIPDCLRKFVPA  208 (1083)
Q Consensus       169 -~-----~----~~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~  208 (1083)
                       +     .    ++|+||+||+|+|+|||||||+++| |+||++|+|||++
T Consensus       443 ~k~~~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g  493 (502)
T PLN02320        443 GKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGG  493 (502)
T ss_pred             ccccCCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCC
Confidence             1     1    2999999999999999999999999 9999999999953

>TIGR00414 serS seryl-tRNA synthetase

Probab=100.00  E-value=3.4e-49  Score=459.68  Aligned_cols=237  Identities=38%  Similarity=0.616  Sum_probs=208.8

Q ss_pred             CCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--
Q psy11602        192 TETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--  269 (1083)
Q Consensus       192 ~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--  269 (1083)
                      .+.|++|..+|..|+.+.+. ..||++|.+|.+|..+..                ...++.+.+.+   ++|++...+  
T Consensus       169 ~p~g~~l~~aL~~~~~~~~~-~~G~~~v~~P~lv~~~~~----------------~~~G~~~~f~~---~~y~i~~~~~~  228 (418)
T TIGR00414       169 KNDGAKLERALINFMLDLLE-KNGYQEIYPPYLVNEESL----------------DGTGQLPKFEE---DIFKLEDTDLY  228 (418)
T ss_pred             ccHHHHHHHHHHHHHHHHHH-HcCCEEEeCCccccHHHH----------------hhcCccccccc---cceEecCCCEE
Confidence            34578888999999999885 789999999999995544                44445566666   577765433  


Q ss_pred             --ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602        270 --KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       270 --~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~  339 (1083)
                        ++.+++++..+.++  |+++|| ++++.+.|||.     |++|+||+|||||+|||+|.+|+|  ++|+++|++|+++
T Consensus       229 L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~--e~s~~~~~~~~~~  306 (418)
T TIGR00414       229 LIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKP--EESAEELEEMTSD  306 (418)
T ss_pred             EEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCH--HHHHHHHHHHHHH
Confidence              55555566555544  788999 99999999997     589999999999999999999999  7899999999999


Q ss_pred             HHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeec
Q psy11602        340 SEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN  419 (1083)
Q Consensus       340 ~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln  419 (1083)
                      +++||+.||||||+|.+++||||++|+++||||||||+++.|+||+|||||+||||||++|+|++.+  +++.+||||||
T Consensus       307 ~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~--~~~~~~vh~ln  384 (418)
T TIGR00414       307 AEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKN--KGKNKYVHTLN  384 (418)
T ss_pred             HHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCC--CCceEEEEeec
Confidence            9999999999999999999999999999999999999999999999999999999999999999753  34579999999


Q ss_pred             ccccchhHHHHHHHhhccCCCc-eecCccccccC
Q psy11602        420 ATACATTRVICAILETHQTETG-VRIPDCLRKFV  452 (1083)
Q Consensus       420 ~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~  452 (1083)
                      |||+|++|+|+|||||||+++| |+||++|+|||
T Consensus       385 ~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py~  418 (418)
T TIGR00414       385 GTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL  418 (418)
T ss_pred             CcchHHHHHHHHHHHHccCCCCCEeCChhccccC
Confidence            9999999999999999999999 88999999998

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.9e-47  Score=445.85  Aligned_cols=189  Identities=46%  Similarity=0.812  Sum_probs=182.2

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||||++++++|+++++||++||++|+|+++|||+|+|++|++++||+|+|||+|+|+|+|+.++  +|+++|+
T Consensus       222 ~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e--~s~~~~~  299 (425)
T PRK05431        222 DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPE--DSYAELE  299 (425)
T ss_pred             CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHH--HHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999995  5999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC-CCc-----
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT-KQK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~-~~~-----  171 (1083)
                      +|+++|++||+.||||||+|.+++||||++++++||+|+|||+.++|+||+|||||+||||||++|+|++. ++.     
T Consensus       300 ~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~~~~~~~~h  379 (425)
T PRK05431        300 ELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVH  379 (425)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCCCCceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999976 432     


Q ss_pred             -cccccccchhheeheeccccCCCe-eEecccccccccc
Q psy11602        172 -IYATACATTRVICAILETHQTETG-VRIPDCLRKFVPA  208 (1083)
Q Consensus       172 -~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~  208 (1083)
                       ||+||+|++|+|+|||||||+++| ++||++|+|||+.
T Consensus       380 tln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~~~  418 (425)
T PRK05431        380 TLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG  418 (425)
T ss_pred             EeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhcccCC
Confidence             899999999999999999999999 9999999999953

>TIGR00414 serS seryl-tRNA synthetase

Probab=100.00  E-value=1.5e-45  Score=429.06  Aligned_cols=187  Identities=50%  Similarity=0.848  Sum_probs=179.3

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||||+++++|++++++||++||++++|+++|||+|+|++|++|+||+|+|||+|+|+|+|+.++  +|+++|+
T Consensus       224 ~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e--~s~~~~~  301 (418)
T TIGR00414       224 DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPE--ESAEELE  301 (418)
T ss_pred             CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHH--HHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999985  5999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC-Cc-----
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~-----  171 (1083)
                      +|+++|++||+.||||||+|.+++||||++++++||||+|||+.++|.||+|||||+||||+|++|+|.+.+ +.     
T Consensus       302 ~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh  381 (418)
T TIGR00414       302 EMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVH  381 (418)
T ss_pred             HHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999653 21     


Q ss_pred             -cccccccchhheeheeccccCCCe-eEecccccccc
Q psy11602        172 -IYATACATTRVICAILETHQTETG-VRIPDCLRKFV  206 (1083)
Q Consensus       172 -~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~  206 (1083)
                       +|+||+|++|+|+||||||++++| ++||.+|+|||
T Consensus       382 ~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py~  418 (418)
T TIGR00414       382 TLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL  418 (418)
T ss_pred             eecCcchHHHHHHHHHHHHccCCCCCEeCChhccccC
Confidence             799999999999999999999999 67999999997

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain

Probab=100.00  E-value=5.1e-44  Score=400.41  Aligned_cols=236  Identities=43%  Similarity=0.694  Sum_probs=203.8

Q ss_pred             CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---
Q psy11602        193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---  269 (1083)
Q Consensus       193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---  269 (1083)
                      +.|++|-.+|..|+.+.+. ..||.+|.+|.++..+..                ...++.+.+++   ++|++...+   
T Consensus        49 p~g~~l~~~l~~~~~~~~~-~~G~~ev~~P~l~~~~l~----------------~~sg~~~~~~~---~~f~v~~~~~~L  108 (297)
T cd00770          49 GDGALLERALINFALDFLT-KRGFTPVIPPFLVRKEVM----------------EGTGQLPKFDE---QLYKVEGEDLYL  108 (297)
T ss_pred             CHHHHHHHHHHHHHHHHHH-HCCCEEEECcccccHHHH----------------hhcCcCccChh---cccEecCCCEEE
Confidence            3466777899999998885 789999999999995555                33344555555   577774422   


Q ss_pred             -ceEEEEeeCCCCC--cchhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHH
Q psy11602        270 -KVEQFVLTSPHDD--ESWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNS  340 (1083)
Q Consensus       270 -~~~~~~~~~~~~~--~s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~  340 (1083)
                       ++...+++....+  -|+++|| ++++.+.|||.     |++++||+|+|||+++|++.+|+|  ++|.+++++|++.+
T Consensus       109 ~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~--e~~~~~~~~~l~~~  186 (297)
T cd00770         109 IATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKP--EESWEELEELISNA  186 (297)
T ss_pred             eecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECc--hHHHHHHHHHHHHH
Confidence             4444444443333  3889999 99999999994     578899999999999999999999  68999999999999


Q ss_pred             HHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecc
Q psy11602        341 EEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNA  420 (1083)
Q Consensus       341 e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~  420 (1083)
                      ++||+.||||||+|.++++|||++|+++||+|+|||++++|+||+|||||+||||||++|+|.+.+  +++.+||||+||
T Consensus       187 ~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~--~~~~~~~~~~~~  264 (297)
T cd00770         187 EEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKK--DGKKQYVHTLNG  264 (297)
T ss_pred             HHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCC--CCCeeeeeEecc
Confidence            999999999999999999999999999999999999999999999999999999999999999752  257899999999


Q ss_pred             cccchhHHHHHHHhhccCCCc-eecCccccccC
Q psy11602        421 TACATTRVICAILETHQTETG-VRIPDCLRKFV  452 (1083)
Q Consensus       421 t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~  452 (1083)
                      |+++++|+|+|||||||+++| |.+|++|+|||
T Consensus       265 ~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~  297 (297)
T cd00770         265 TALATPRTIVAILENYQTEDGSVVIPEVLRPYM  297 (297)
T ss_pred             cchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence            999999999999999999999 77889999998

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain

Probab=100.00  E-value=5.8e-43  Score=391.87  Aligned_cols=186  Identities=60%  Similarity=1.016  Sum_probs=177.9

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++++|+||+|++++.+++++++||++||++++|+++|||+|++++|++++||+|+|||+|+|+|+|+.++  +|+++|++
T Consensus       104 ~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e--~~~~~~~~  181 (297)
T cd00770         104 EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPE--ESWEELEE  181 (297)
T ss_pred             CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECch--HHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999995  59999999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC-Cc------
Q psy11602         99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK------  171 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~------  171 (1083)
                      ++++|++||++|||||+++++++||||++++++||+|+|||++++|+|+++||||+||||+|++|+|.+.+ +.      
T Consensus       182 ~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~  261 (297)
T cd00770         182 LISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHT  261 (297)
T ss_pred             HHHHHHHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999763 42      


Q ss_pred             cccccccchhheeheeccccCCCeeE-ecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVR-IPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~-lP~~L~p~~  206 (1083)
                      +|+||++++|+|+||||||++++|++ +|.+|+|||
T Consensus       262 ~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~  297 (297)
T cd00770         262 LNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM  297 (297)
T ss_pred             ecccchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence            69999999999999999999999955 559999997

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=100.00  E-value=8.9e-40  Score=393.12  Aligned_cols=330  Identities=18%  Similarity=0.203  Sum_probs=268.3

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ++||.+++++|+||||+.++.++++++.||++||++||||+++||+|+    |+++||+|+|||+|+|+|+|+.+. +++
T Consensus        96 ~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~----rpr~Gl~R~REF~~~d~~~f~~~~-~~a  170 (568)
T TIGR00409        96 LKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHSDE-ESL  170 (568)
T ss_pred             EecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCC----CCCCCccccccEEEEEEEEEeCCh-HHH
Confidence            468899999999999999999999999999999999999999999999    678899999999999999999998 789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC----
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT----  168 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~----  168 (1083)
                      +++|+.|+++|.+||++|||||++|.+++|+||+.+||+||+++    ..++++|.+|+ |.+|||+...+.....    
T Consensus       171 ~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~----~~ge~~i~~c~-~~~y~an~e~a~~~~~~~~~  245 (568)
T TIGR00409       171 DATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLA----ESGEDTIVYSD-ESDYAANIELAEALAPGERN  245 (568)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEec----CCCceEEEEec-CcccchhhhhhcccCccccc
Confidence            99999999999999999999999999999999999999888885    56779999999 5569998877653310    


Q ss_pred             C---C--cccccc------------ccchhheeheeccccCCC---e--eEec-------cccccccc---------c-c
Q psy11602        169 K---Q--KIYATA------------CATTRVICAILETHQTET---G--VRIP-------DCLRKFVP---------A-V  209 (1083)
Q Consensus       169 ~---~--~~n~tg------------~a~~Rli~Alle~~~~~~---G--i~lP-------~~L~p~~~---------~-~  209 (1083)
                      .   .  .+++++            +...+.+++++..- ++.   -  +.+|       .+|...++         + .
T Consensus       246 ~~~~~~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~  324 (568)
T TIGR00409       246 APTAELDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKA-VDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEE  324 (568)
T ss_pred             cccccceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEe-cCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHH
Confidence            0   0  144443            44588888888753 221   1  2223       12222210         0 0


Q ss_pred             ----ccCCCCcc-ccccC--cccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCCCCC
Q psy11602        210 ----YLNEAGEI-PFVKT--APIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDD  282 (1083)
Q Consensus       210 ----~~~~~G~~-pv~~P--~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~~~~  282 (1083)
                          .....||+ |+..+  ++|.+|.+....        .++..|+++.|+|....+ ..|+++.+.++++..+..  |
T Consensus       325 ~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~--------~~~~~gan~~~~h~~~~~-~~rd~~~~~~~d~~~~~e--G  393 (568)
T TIGR00409       325 IFQKIASGPGSLGPVNINGGIPVLIDQTVALM--------SDFAAGANADDKHYFNVN-WDRDVAIPEVADIRKVKE--G  393 (568)
T ss_pred             HHHhhCCCCCccCccccccCceEEechhhhcc--------cccccccCCCCceeeccc-ccccCCccccchhhhhhc--c
Confidence                00267898 88875  566777777777        788899999999998332 499998888888887777  5


Q ss_pred             cchhhhhhhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcc
Q psy11602        283 ESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN  362 (1083)
Q Consensus       283 ~s~~~~~~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~  362 (1083)
                      +         .|..|...-+..|||--.|.|.                                                
T Consensus       394 d---------~cp~c~~~l~~~rgIEvGhiF~------------------------------------------------  416 (568)
T TIGR00409       394 D---------PSPDGQGTLKIARGIEVGHIFQ------------------------------------------------  416 (568)
T ss_pred             C---------CCCCCCCcccccceEEEEEecc------------------------------------------------
Confidence            4         4556766667778888888886                                                


Q ss_pred             hhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCce
Q psy11602        363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGV  442 (1083)
Q Consensus       363 ~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi  442 (1083)
                                                 .|+..|++++++|.+.   +++.++++| +++|+.++|+|+||+|+|.+++|+
T Consensus       417 ---------------------------LG~kYS~~~~~~~~d~---~g~~~~~~m-gcyGIGvsRli~aiie~~~D~~Gl  465 (568)
T TIGR00409       417 ---------------------------LGTKYSEALKATFLDE---NGKNQFMTM-GCYGIGVSRLVSAIAEQHHDERGI  465 (568)
T ss_pred             ---------------------------chhhhHHhcCCEEECC---CCCEEEEEE-eCCcchHHHHHHHHHHHhCccCCC
Confidence                                       7899999999999986   567889998 799999999999999999999999


Q ss_pred             ecCccccccC
Q psy11602        443 RIPDCLRKFV  452 (1083)
Q Consensus       443 ~iP~~L~py~  452 (1083)
                      +||..|+||-
T Consensus       466 ~wP~~iAP~q  475 (568)
T TIGR00409       466 IWPKAIAPYD  475 (568)
T ss_pred             cCChhhCCeE
Confidence            9999999995

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.4e-39  Score=374.56  Aligned_cols=307  Identities=17%  Similarity=0.220  Sum_probs=237.0

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ++||.+++|+|+||||+.|++|+++||.||+||||+||||+++||||+    |+|+||+|.|||+|+|.|+|+.+. ++|
T Consensus        96 v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~----rpr~gllR~REF~mkdaySfh~~~-e~a  170 (500)
T COG0442          96 VKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEK----RPRFGLLRGREFLMKDAYSFHADE-EDA  170 (500)
T ss_pred             EEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccc----cCCCCccchheeeecccccccCCH-HHH
Confidence            689999999999999999999999999999999999999999999999    889999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcc-cceeccCC-C
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRL-LVRYGQTK-Q  170 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl-~i~y~~~~-~  170 (1083)
                      +++|++|+++|.+||.+|||.|+.+.+.+|.+|+..++  .|+++|| +++.++|++|+++++++++.+ .++|++.. +
T Consensus       171 ~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S~--eF~~l~p-d~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~  247 (500)
T COG0442         171 EETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSH--EFEALMP-DGGEDQIATSHHYGANFEKAFIDIKFEDEEEG  247 (500)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEeecccCCCCCCccce--EEEEEcc-CCCccEEEEecchHHhHHHhccCCCccccccc
Confidence            99999999999999999999999999999988887766  5567888 566699999999999999999 99988765 3


Q ss_pred             c---cccc-cccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhh
Q psy11602        171 K---IYAT-ACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTM  246 (1083)
Q Consensus       171 ~---~n~t-g~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~  246 (1083)
                      .   +++| ...++|.+.++|..|+|+.|+++|+.++|.+     +      ++.|+.+....              ...
T Consensus       248 ~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~q-----V------~~~~~~~~ga~--------------~h~  302 (500)
T COG0442         248 ELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQ-----V------VIVPIFIKGAN--------------EHY  302 (500)
T ss_pred             cceEecccceEEEeeeeeEEEEEecCCCCccCCchhccce-----E------EEEeccccCcc--------------hhh
Confidence            2   4443 4445999999999999999999999898888     3      55566665110              011


Q ss_pred             hhhhccccccccccCc-eEeeeccceEEEEeeCCCCCcchhhhhhhhcccccccccccCcCceeEEEeeeEEEEEEeCCC
Q psy11602        247 SLFSQVGSHGRDTRGI-FRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPH  325 (1083)
Q Consensus       247 ~~~~e~g~h~~dl~~i-~Rv~qfd~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~  325 (1083)
                      .+.+........++.+ +|++-++.       .|. +.              +..-...+|+--.|.|.           
T Consensus       303 ~~~~~~rd~~~~l~~~~~~~~~D~~-------~~~-~~--------------G~kl~~~e~ieVghif~-----------  349 (500)
T COG0442         303 KVVNYGRDVAEPLEKLGIRVEGDDR-------SPD-GP--------------GFKLNIWEGIEVGHIFE-----------  349 (500)
T ss_pred             hhhhhhhhhhhhhhhcceEEecccc-------CCC-CC--------------CceeeeeeccccCEEEE-----------
Confidence            1122222222111111 22222210       010 00              00112234444444443           


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecc
Q psy11602        326 DDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQT  405 (1083)
Q Consensus       326 ~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~  405 (1083)
                                                                                      .|.-.+..+++.+.++
T Consensus       350 ----------------------------------------------------------------lG~kyse~~~a~v~~r  365 (500)
T COG0442         350 ----------------------------------------------------------------LGTKYSEAMNATVLDR  365 (500)
T ss_pred             ----------------------------------------------------------------ECchhhhhCeeEEEec
Confidence                                                                            4556677788888776


Q ss_pred             cCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCC
Q psy11602        406 KKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP  453 (1083)
Q Consensus       406 ~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~  453 (1083)
                         +++.++.+|. ++++.++|+++|+||++++++||.+|.+++||--
T Consensus       366 ---~g~~~~~~mg-~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~  409 (500)
T COG0442         366 ---DGKEQPKTMG-CYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDV  409 (500)
T ss_pred             ---CCCccceEEE-ehhhhhhhHHHHHHHHhcccccCccccccCccee
Confidence               5566777777 9999999999999999999999999999999964

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=100.00  E-value=9.2e-38  Score=342.99  Aligned_cols=170  Identities=18%  Similarity=0.214  Sum_probs=162.0

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .|+.+++++|+||+|++++.++++++.++++||+|+||++++||+|+    ++++||+|+|||.|+|+++|+.++ ++|+
T Consensus        81 ~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~----~~~~Gl~R~reF~q~e~~~~~~~~-~~a~  155 (255)
T cd00779          81 KDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFLMKDAYSFDIDE-ESLE  155 (255)
T ss_pred             ecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCC----CCCCceeeeeeEeHhhheeccCCH-HHHH
Confidence            57777899999999999999999999999999999999999999999    678899999999999999999988 7899


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc--
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--  171 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~--  171 (1083)
                      +.+++++.+|.+||+.|||||+++.+++++||+.++++||+|+|||+.+ ++||+|||||||+|||+++|+|++.++.  
T Consensus       156 ~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~sr~~~i~~~~~~~~~~  234 (255)
T cd00779         156 ETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKYSKALGATFLDENGKPK  234 (255)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhHHHhcCcEEECCCCCEE
Confidence            9999999999999999999999999999999999999999999999776 8999999999999999999999976653  


Q ss_pred             ---cccccccchhheeheecc
Q psy11602        172 ---IYATACATTRVICAILET  189 (1083)
Q Consensus       172 ---~n~tg~a~~Rli~Alle~  189 (1083)
                         +|++|++++|+|+|||||
T Consensus       235 ~~~~~~~gi~~~R~l~ai~e~  255 (255)
T cd00779         235 PLEMGCYGIGVSRLLAAIIEQ  255 (255)
T ss_pred             eeEecCccchHHHHHHHHHcC
Confidence               899999999999999996

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1e-36  Score=368.71  Aligned_cols=328  Identities=18%  Similarity=0.169  Sum_probs=257.7

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ++|+.+++++|+||+|++++.++++++.||++||+|+||++++||+|+    ++++||+|+|||+|+|+|+|+.++ +++
T Consensus        96 ~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~----rp~~Gl~R~reF~q~d~~~f~~~~-~~a  170 (565)
T PRK09194         96 LKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHADE-ESL  170 (565)
T ss_pred             EecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCC----CCCCcccccccEEEeeEEEEcCCh-HHH
Confidence            468889999999999999999999999999999999999999999999    678899999999999999999988 789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---C
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---K  169 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---~  169 (1083)
                      ++.|++|+++|.+||++|||||+++.+++|+||+.++|    |+|+|+..+|++|.+|++|+ |.|+...+.-...   .
T Consensus       171 ~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~----e~~~~~~~g~~~~~~c~~c~-~~~n~e~a~~~~~~~~~  245 (565)
T PRK09194        171 DETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASH----EFMVLADSGEDTIVYSDESD-YAANIEKAEALPPPRAA  245 (565)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeE----EEEEecCCCceEEEEeCCCC-cchhhhhhcccCCCCcc
Confidence            99999999999999999999999999999999999999    66999999999999999999 9998887653210   0


Q ss_pred             C-----cccc------------ccccchhheeheeccccCCCe--eEec-------ccccccccc---------------
Q psy11602        170 Q-----KIYA------------TACATTRVICAILETHQTETG--VRIP-------DCLRKFVPA---------------  208 (1083)
Q Consensus       170 ~-----~~n~------------tg~a~~Rli~Alle~~~~~~G--i~lP-------~~L~p~~~~---------------  208 (1083)
                      .     .+.+            .++...+++++|+-... +.-  +++|       .+|+..++.               
T Consensus       246 ~~~~~~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~-~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~  324 (565)
T PRK09194        246 AEEALEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKAD-GELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAAL  324 (565)
T ss_pred             ccccceeecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeC-CeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhh
Confidence            0     0111            24445777888776522 211  3344       333333321               


Q ss_pred             cccCCCCcc-ccccC--cccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCCCCCcch
Q psy11602        209 VYLNEAGEI-PFVKT--APIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW  285 (1083)
Q Consensus       209 ~~~~~~G~~-pv~~P--~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~~~~~s~  285 (1083)
                      +.  +.|++ |++.+  +++..|.+....        .++..+.+..|.|..... ..|+++++.+.++..+..  ++  
T Consensus       325 g~--~~G~v~P~Gl~~~v~viiD~sl~~~--------~~~~~gan~~g~h~~~~~-~~~d~~~~~~~d~~~~~~--g~--  389 (565)
T PRK09194        325 GA--VPGFLGPVGLPKDVPIIADRSVADM--------SNFVVGANEDDYHYVGVN-WGRDFPVPEVADLRNVVE--GD--  389 (565)
T ss_pred             CC--CCCccCcccCCCCceEEEecccccc--------ccccccCCCCCceeeCCc-cCcCCCcccccchhhhhc--CC--
Confidence            22  45776 77754  344444554444        667778888888887322 388887777777766665  44  


Q ss_pred             hhhhhhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhh
Q psy11602        286 KMLDEMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAA  365 (1083)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a  365 (1083)
                             .|..|...-+..|||--.|.|.                                                   
T Consensus       390 -------~c~~c~~~l~~~~~iEvGh~f~---------------------------------------------------  411 (565)
T PRK09194        390 -------PSPDGGGTLKIARGIEVGHIFQ---------------------------------------------------  411 (565)
T ss_pred             -------CCCCCCceeEEeeeEEEEEEec---------------------------------------------------
Confidence                   3445544445556666666664                                                   


Q ss_pred             hceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecC
Q psy11602        366 AKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIP  445 (1083)
Q Consensus       366 ~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP  445 (1083)
                                              .++-.|++++++|.++   +++.++++| ++.|+.++|+|+||+|+|.+++|+++|
T Consensus       412 ------------------------lG~~ys~~~~~~~~~~---~g~~~~~~m-~~~gIGv~Rli~al~e~~~d~~gl~~P  463 (565)
T PRK09194        412 ------------------------LGTKYSEAMNATVLDE---NGKAQPLIM-GCYGIGVSRLVAAAIEQNHDEKGIIWP  463 (565)
T ss_pred             ------------------------CCcchhhccCCEEECC---CCCEEeEEE-eeEechHHHHHHHHHHhhccccCccCC
Confidence                                    7899999999999876   567788886 599999999999999999999999999


Q ss_pred             ccccccC
Q psy11602        446 DCLRKFV  452 (1083)
Q Consensus       446 ~~L~py~  452 (1083)
                      ..++||-
T Consensus       464 ~~iaP~~  470 (565)
T PRK09194        464 KAIAPFD  470 (565)
T ss_pred             CccCCce
Confidence            9999984

>PRK00960 seryl-tRNA synthetase; Provisional

Probab=100.00  E-value=3.9e-37  Score=361.38  Aligned_cols=230  Identities=15%  Similarity=0.187  Sum_probs=188.9

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec------
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF------  268 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf------  268 (1083)
                      |+.|-.+|..|+.+.+....||.+|..|.+|..+...+.                ++.+.+.+   ++|.+..+      
T Consensus       222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ks----------------Ghl~~F~e---~my~V~~~~~d~e~  282 (517)
T PRK00960        222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKM----------------RYLEGLPE---GMYYVCPPKRDPEY  282 (517)
T ss_pred             HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhc----------------CCccCChh---hceEeecccccccc
Confidence            455558889999776433569999999999996666444                34444444   34443210      


Q ss_pred             --------cceEEEEeeC------------------------CCCCcchhhhh-hhhccc-ccccccc-cCcCceeEEEe
Q psy11602        269 --------EKVEQFVLTS------------------------PHDDESWKMLD-EMIQNS-EEFYADL-DTRGIFRVHQF  313 (1083)
Q Consensus       269 --------d~~~~~~~~~------------------------~~~~~s~~~~~-~~~~~~-~~~~~~~-~trGl~Rvhqf  313 (1083)
                              ..++++++..                        .+..-||++|| ++.+.+ .|||+.. .++||+|||||
T Consensus       283 ~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF  362 (517)
T PRK00960        283 FEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEF  362 (517)
T ss_pred             ccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCccccee
Confidence                    0122333320                        01235789999 777745 8999953 58999999999


Q ss_pred             eeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEEEe----------ccCCCcchhhhceeeEEEeeC---CCC
Q psy11602        314 EKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRVVN----------IVSGALNHAAAKKLDLEAWFP---GSG  379 (1083)
Q Consensus       314 ~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRvv~----------~~~~dl~~~a~~~~DiE~w~P---~~~  379 (1083)
                      +|+|++.+++|  ++|++++++|+..++.+++.|+|| ||+|.          ++++||++++.+|||+|||||   +++
T Consensus       363 ~kvE~h~f~tp--Eqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~g  440 (517)
T PRK00960        363 HRIEIVWLGTP--EQVEEIRDELLKYAHILAEKLDLEYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDER  440 (517)
T ss_pred             EEEEEEEEeCH--HHHHHHHHHHHHHHHHHHHHcCCCceEEecccccccccCccccccccCccccceeEEEEecCccCCC
Confidence            99999999999  789999999999999999999999 99999          999999999999999999999   899


Q ss_pred             cEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCC
Q psy11602        380 AFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA  454 (1083)
Q Consensus       380 ~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~  454 (1083)
                      +|+||+|||||+||||||++|+|.+       .+++|| ||||+|++|+|+|||||||.++| .||++||+|||+
T Consensus       441 k~~ev~S~S~hgd~farrfnIk~~~-------g~~~hT-nctG~g~eR~l~AlLe~hG~d~~-~wPe~~r~~~~~  506 (517)
T PRK00960        441 KWVAVTSANVHGTHFVEGFNIKDYK-------GRKLWT-GCTGYGLERWVIGFLAQKGFDPE-NWPEEIRKRVGE  506 (517)
T ss_pred             CEEEEEeeeeccchhhHhhCcccCC-------CCeEee-cceeeHHHHHHHHHHHhcCCCCC-cCCHHHHHhhcC
Confidence            9999999999999999999998852       236999 99999999999999999999999 999999999974

>KOG2324|consensus

Probab=100.00  E-value=8.1e-37  Score=331.97  Aligned_cols=185  Identities=18%  Similarity=0.230  Sum_probs=165.4

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccC-CCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWL-PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~-s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      +.||+++.+||.||||+.+|+++++.+- ||+||||++|||+++||||.    |++.||+|.|||.|+|||+|+.++ |.
T Consensus       101 l~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDEl----rpRfGLlRgREFlMKDmYsFd~~~-et  175 (457)
T KOG2324|consen  101 LHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDEL----RPRFGLLRGREFLMKDMYSFDSDE-ET  175 (457)
T ss_pred             eeccCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhcc----CccccchhhHHHHHhhhhcccCCH-HH
Confidence            7899999999999999999999999985 99999999999999999999    556699999999999999999999 89


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCce---------------------------
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAF---------------------------  144 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~---------------------------  144 (1083)
                      |.++|+.+.++|.+||++|||||..|.+++|++||.-||+|.    .+..-+.                           
T Consensus       176 A~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfh----l~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp  251 (457)
T KOG2324|consen  176 AQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFH----LIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCP  251 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEe----ccCccCccceeecCcCCccCchhhhcCCccccCC
Confidence            999999999999999999999999999999999999999663    3333333                           


Q ss_pred             ------------eEEEEcCCCchhhhhcccceeccCCCc-----cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        145 ------------RELVSCSNCLDYQSRRLLVRYGQTKQK-----IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       145 ------------~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                                  +||++....|+.+|+.|+++|-+..|.     |+|+|++++|+|+|++|...+++|++||..|+||.
T Consensus       252 ~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~  330 (457)
T KOG2324|consen  252 KCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYK  330 (457)
T ss_pred             cccCCCcccccceEEEEEEEeccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcce
Confidence                        444444455667788899987765443     99999999999999999999999999999999997

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=100.00  E-value=6.9e-36  Score=329.52  Aligned_cols=165  Identities=21%  Similarity=0.204  Sum_probs=154.8

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++++|+||+|++++.++++++.||++||+++||+++|||+|+    ++++||+|+|||+|+|+|+|+... ++|++.++.
T Consensus        92 ~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~----r~~~Gl~R~reF~~~e~~~~~~~~-e~a~~e~~~  166 (264)
T cd00772          92 EDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEI----RPRFGFLRAREFIMKDGHSAHADA-EEADEEFLN  166 (264)
T ss_pred             ceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcC----CCCCCcceeeEEEEeeeEEecCCH-HHHHHHHHH
Confidence            789999999999999999999999999999999999999999    678999999999999999997666 789999999


Q ss_pred             HHHHHHHHHHHcC-CceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhccc--ceeccCCCc----
Q psy11602         99 MIQNSEEFYADLG-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLL--VRYGQTKQK----  171 (1083)
Q Consensus        99 ~~~~y~~if~~Lg-Lpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~--i~y~~~~~~----  171 (1083)
                      |+++|++||+.|| |||+++.+++||+|.+++++||||+||| ++.+.++.++|+|+|+||++++  |+|+++++.    
T Consensus       167 ~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  245 (264)
T cd00772         167 MLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALME-DGKAKQAETGHIFGEGFARAFDLKAKFLDKDGKEKFF  245 (264)
T ss_pred             HHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECC-CCCEeEEEeeeeccCCchhhcCCccEEECCCCCEEEE
Confidence            9999999999999 9999999999999999999999999999 5667888889999999999666  999976653    


Q ss_pred             -cccccccchhheeheecc
Q psy11602        172 -IYATACATTRVICAILET  189 (1083)
Q Consensus       172 -~n~tg~a~~Rli~Alle~  189 (1083)
                       +|++|+|++|+|+||||+
T Consensus       246 ~~n~~gi~~~R~l~aile~  264 (264)
T cd00772         246 EMGCWGIGISRFIGAIIEQ  264 (264)
T ss_pred             EeccccchHHHHHHHhhcC
Confidence             899999999999999984

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>KOG0954|consensus

Probab=100.00  E-value=9.1e-36  Score=344.87  Aligned_cols=238  Identities=29%  Similarity=0.608  Sum_probs=186.5

Q ss_pred             CCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCceeecCCCCcc
Q psy11602        687 KFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGEN  766 (1083)
Q Consensus       687 ~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~~g~~  766 (1083)
                      .++++..|+||+.+++++.|+|||||+|+++|||.|||+..+          |+++|+|+.|... ..+.|+|||+    
T Consensus       267 e~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~----------p~gpWlCr~Calg-~~ppCvLCPk----  331 (893)
T KOG0954|consen  267 EYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEV----------PEGPWLCRTCALG-IEPPCVLCPK----  331 (893)
T ss_pred             eccccceeceecCCCccccceeEEeccchhHHHHhhhceeec----------CCCCeeehhcccc-CCCCeeeccc----
Confidence            378999999999999999999999999999999999999887          7899999999998 4799999999    


Q ss_pred             ccccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCC-ceeecccccccCCcEEecccccCceeee-cCc
Q psy11602        767 HLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVG-KWVHLVCALYIPGVAFGEVDRLSNVTLF-EMP  844 (1083)
Q Consensus       767 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~-~WvHv~CAlw~pev~f~~~~~~~pv~~~-~ip  844 (1083)
                                                          +||+||++..| +|+||.||||+|||.|++.+.|+||+.+ .||
T Consensus       332 ------------------------------------kGGamK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~Ip  375 (893)
T KOG0954|consen  332 ------------------------------------KGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIP  375 (893)
T ss_pred             ------------------------------------cCCcccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCc
Confidence                                                89999999887 8999999999999999999999999977 699


Q ss_pred             cCCcCCCccccCCCCCCCCceeEEeCCCCCCccceecee--------eccCCCCccchhhhhHHhhhhccCC---CCCCC
Q psy11602        845 YSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYM--------EVVFPQPPQRKLGKYKVKYVDMKSL---RNPPW  913 (1083)
Q Consensus       845 ~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~--------~~~~~~~~~~~~~~~r~~y~~~~~~---~~~~w  913 (1083)
                      .+||.+ .|.+|+.+    .||||||+..+|.+.||+.+        +.+....+...+..++.++.++...   .+..-
T Consensus       376 esRwsl-vC~LCk~k----~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v~~~s~c~khs~~~~~~s~g~~~e  450 (893)
T KOG0954|consen  376 ESRWSL-VCNLCKVK----SGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEVKFKSYCSKHSDHREGKSLGNEAE  450 (893)
T ss_pred             HHHHHH-HHHHhccc----CcceEEecccchhhhccchhhhhcCCeeeeeeccCCchhheeecccccccccccccccccC
Confidence            999985 99999985    99999999999999999954        3444444444444444332222110   00001


Q ss_pred             CCCcCcCC-CCCCcHHHHHHHHHHHHHhcccchhhhhhhHhhhhhhhcccccCCCcccchhhhhhhhcccchhhh
Q psy11602        914 VPTQKLAR-PLTSSATLCRALLHKARLMEVDTGAVAQAQSDLATLADMNKKWHIPLAFNVEFVAYFLNRNGRLGK  987 (1083)
Q Consensus       914 ~~~~k~~r-~l~~~aea~r~~~~Ka~lmGis~~~~e~~~~~l~s~~dv~rk~~Lp~~Fs~efv~Yy~dR~~rv~~  987 (1083)
                      .|. -+.. +..+..+.-+...+..+|.++     +..+++++...|++..+.++. |.+.|++-|+...+....
T Consensus       451 ~p~-p~~~~p~~~~~e~~~~s~r~q~l~~~-----e~ef~~~v~~~diae~l~~~e-~~vs~iynywklkrks~~  518 (893)
T KOG0954|consen  451 SPH-PRCHLPEQSVGEGHRSSDRAQKLQEL-----EGEFYDIVRNEDIAELLSMPE-FAVSAIYNYWKLKRKSRF  518 (893)
T ss_pred             CCC-ccccChhhhhhhhhhhhHHHHHHhhc-----chhHhhhhhHHHHHHHhcCch-HHHHHHHHHHHHhhhccC
Confidence            110 0100 123334666667777777777     888999999999999888665 778899877766665553

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=100.00  E-value=3.2e-35  Score=322.90  Aligned_cols=215  Identities=17%  Similarity=0.207  Sum_probs=176.0

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--cc--
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--EK--  270 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d~--  270 (1083)
                      |.++-.+|..++.+.+. ..||.+|.+|+++..+...+                .++.+.+.+   .+|++...  +.  
T Consensus        30 g~~l~~~i~~~~~~~~~-~~G~~ei~~P~l~~~~~~~~----------------sg~~~~~~~---emy~~~d~~~~~l~   89 (255)
T cd00779          30 GLRVLKKIENIIREEMN-KIGAQEILMPILQPAELWKE----------------SGRWDAYGP---ELLRLKDRHGKEFL   89 (255)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEECCccCCHHHHHh----------------cCCccccCc---ccEEEecCCCCeEE
Confidence            34444677888777763 67999999999999554422                233334444   46665432  11  


Q ss_pred             ---eEEEEeeCCCCC--cchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        271 ---VEQFVLTSPHDD--ESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       271 ---~~~~~~~~~~~~--~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                         +....++.+..+  .|+++|| ++++...|||+. +..+||+|+|||.++|+..++.++ ++|++.+++|+.+++++
T Consensus        90 LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~-~~a~~~~~~i~~~~~~i  168 (255)
T cd00779          90 LGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDE-ESLEETYEKMYQAYSRI  168 (255)
T ss_pred             EecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCH-HHHHHHHHHHHHHHHHH
Confidence               111112222221  3577899 999999999998 889999999999999999999985 68999999999999999


Q ss_pred             HHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeeccccc
Q psy11602        344 YADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATAC  423 (1083)
Q Consensus       344 ~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~  423 (1083)
                      |+.|||||+++..++++||..++++||||+|||+++ |+||+|||||+||||||++|||++.   +++.+|||| ||+|+
T Consensus       169 l~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~sr~~~i~~~~~---~~~~~~~~~-~~~gi  243 (255)
T cd00779         169 FKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKYSKALGATFLDE---NGKPKPLEM-GCYGI  243 (255)
T ss_pred             HHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhHHHhcCcEEECC---CCCEEeeEe-cCccc
Confidence            999999999999999999999999999999999887 8999999999999999999999975   567899999 99999


Q ss_pred             chhHHHHHHHhh
Q psy11602        424 ATTRVICAILET  435 (1083)
Q Consensus       424 a~~R~i~ailEn  435 (1083)
                      ||+|+|+|||||
T Consensus       244 ~~~R~l~ai~e~  255 (255)
T cd00779         244 GVSRLLAAIIEQ  255 (255)
T ss_pred             hHHHHHHHHHcC
Confidence            999999999997

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.

>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=100.00  E-value=2.9e-34  Score=316.38  Aligned_cols=164  Identities=21%  Similarity=0.209  Sum_probs=153.7

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||+|++++.++++++.||++||+++||+++|||+|+    ++++||+|+|||+|+|+|+++.+. ++|++.|+
T Consensus        91 ~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~----~~~~Gl~R~reF~~~d~h~~~~~~-e~~~~~~~  165 (261)
T cd00778          91 EEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWET----KTTRPFLRTREFLWQEGHTAHATE-EEAEEEVL  165 (261)
T ss_pred             CCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCC----CCCCceeEeeeeeeeceeeccCCH-HHHHHHHH
Confidence            3589999999999999999999999999999999999999999    778999999999999999877666 68999999


Q ss_pred             HHHHHHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         98 EMIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      +++++|++||+.| ||||+++..++||++.++.++||+|+||| .+++.||+||+||+|+||+||+|+|.+.++.     
T Consensus       166 ~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~h  244 (261)
T cd00778         166 QILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIKYQDKDGQKEYVH  244 (261)
T ss_pred             HHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCEEECCCCCCcCcE
Confidence            9999999999999 99999999999999999999999999999 8999999999999999999999999977653     


Q ss_pred             cccccccchhheeheec
Q psy11602        172 IYATACATTRVICAILE  188 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle  188 (1083)
                      +|++| +++|+|+|||.
T Consensus       245 ~~~~g-~~~R~i~ali~  260 (261)
T cd00778         245 QTSWG-ISTRLIGAIIM  260 (261)
T ss_pred             Eeccc-HHHHHHHHHHh
Confidence            67777 55999999985

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=100.00  E-value=1.1e-33  Score=311.89  Aligned_cols=210  Identities=18%  Similarity=0.168  Sum_probs=166.3

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----------
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE----------  269 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd----------  269 (1083)
                      ..|..++...+ ...||.+|.+|+++..+...+.+                +.+....  .+++++...+          
T Consensus        36 ~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~g----------------~~~~~~~--~e~~~~~~~~~~~~~~~l~L   96 (264)
T cd00772          36 DKIENVLDKMF-KEHGAQNALFPFFILASFLEKEA----------------EHDEGFS--KELAVFKDAGDEELEEDFAL   96 (264)
T ss_pred             HHHHHHHHHHH-HHcCCeEEECCeeccHHHHhhcC----------------CcccccC--ccceEEEeCCCCccCceEEE
Confidence            45555555555 36799999999999966554332                2222111  0234433211          


Q ss_pred             -ceEEEEeeCCCCCc--chhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEE-eCCCchhHHHHHHHHHHHHHHH
Q psy11602        270 -KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVL-TSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       270 -~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~-~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                       ++..++++..+.++  ||++|| ++++...|||.. ++++||+|+|||.++|++.+ +.+  ++|++.+++|++++++|
T Consensus        97 rPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~--e~a~~e~~~~~~~~~~i  174 (264)
T cd00772          97 RPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADA--EEADEEFLNMLSAYAEI  174 (264)
T ss_pred             CCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCH--HHHHHHHHHHHHHHHHH
Confidence             22333333322222  688999 999999999998 87899999999999999999 666  78999999999999999


Q ss_pred             HHHhC-CcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc--ccceEEecccCCCCceeeEEeecc
Q psy11602        344 YADLG-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR--RLLVRYGQTKKMNEKIEFVHMLNA  420 (1083)
Q Consensus       344 ~~~L~-lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar--rl~iry~~~~~~~~~~~~~htln~  420 (1083)
                      |+.|+ ||||++..++||++++|.++|||||||| +++++++.++|||+|||||  +|+|||++.   +++.+|||| ||
T Consensus       175 ~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~-n~  249 (264)
T cd00772         175 ARDLAAIDFIEGEADEGAKFAGASKSREFEALME-DGKAKQAETGHIFGEGFARAFDLKAKFLDK---DGKEKFFEM-GC  249 (264)
T ss_pred             HHhcCCccEEEEEcCCCccccCCcCCEEEEEECC-CCCEeEEEeeeeccCCchhhcCCccEEECC---CCCEEEEEe-cc
Confidence            99999 9999999999999999999999999999 6778888888889999999  555999975   467899999 99


Q ss_pred             cccchhHHHHHHHhh
Q psy11602        421 TACATTRVICAILET  435 (1083)
Q Consensus       421 t~~a~~R~i~ailEn  435 (1083)
                      ||+||+|+|+||||+
T Consensus       250 ~gi~~~R~l~aile~  264 (264)
T cd00772         250 WGIGISRFIGAIIEQ  264 (264)
T ss_pred             ccchHHHHHHHhhcC
Confidence            999999999999994

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>PRK08661 prolyl-tRNA synthetase; Provisional

Probab=100.00  E-value=4.1e-33  Score=330.61  Aligned_cols=181  Identities=20%  Similarity=0.208  Sum_probs=170.9

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||||++++.++++|+.||++|||++||++++||+|+    + ++||+|+|||+|+|+|+++.+. ++|++.|+
T Consensus       103 ~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~----~-~rgl~R~rEF~~~E~h~~~~~~-eea~~e~~  176 (477)
T PRK08661        103 EEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWET----K-TRPFLRTREFLWQEGHTAHATE-EEAEEETL  176 (477)
T ss_pred             CceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCC----C-CCCcceeeeEEEcceeeeeCCH-HHHHHHHH
Confidence            5789999999999999999999999999999999999999999    5 7799999999999999988887 78999999


Q ss_pred             HHHHHHHHHH-HHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         98 EMIQNSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if-~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      +++++|.+|| +.|||||+++..+.+++++++.++||+|+|||+ ++..|+++++++|+++|++|+|+|.+.++.     
T Consensus       177 ~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v~  255 (477)
T PRK08661        177 EMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVH  255 (477)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcCCEEECCCCCEeeeE
Confidence            9999999999 999999999999999999999999999999996 788999999999999999999999987764     


Q ss_pred             cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      ++++|++ +|+|+||||+|+|+.|++||..++|++
T Consensus       256 ~~s~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~q  289 (477)
T PRK08661        256 QTSWGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQ  289 (477)
T ss_pred             EecccHH-HHHHHHHHHHhCccCCCccCcccCCCe
Confidence            5555655 999999999999999999999999998

>KOG0956|consensus

Probab=99.98  E-value=2.4e-33  Score=322.03  Aligned_cols=146  Identities=39%  Similarity=0.859  Sum_probs=134.7

Q ss_pred             CccccccCCCCCCCCCcEEEccc--CCcccccccccccccCCCcccCCCCCCCCcccccccCCC--CCCceeecCCCCcc
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDS--CGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI--AEPTCELCPNFGEN  766 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~--C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~--~~~~C~LCp~~g~~  766 (1083)
                      .--||||-+++.+.+|++|+||+  |-++|||.||||..+          |+|+|||+.|+...  ..+.|.|||.    
T Consensus         5 VGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqV----------PtGpWfCrKCesqeraarvrCeLCP~----   70 (900)
T KOG0956|consen    5 VGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQV----------PTGPWFCRKCESQERAARVRCELCPH----   70 (900)
T ss_pred             ccceeeecCcCCCccCceeeecCCCceeeeehhcceeEec----------CCCchhhhhhhhhhhhccceeecccC----
Confidence            34799999999999999999997  999999999999998          89999999999753  4689999999    


Q ss_pred             ccccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeeecCccC
Q psy11602        767 HLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYS  846 (1083)
Q Consensus       767 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~  846 (1083)
                                                          +.||||+|+.+.|+||+||||+|||.|+|+.+|+||.+..||..
T Consensus        71 ------------------------------------kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~d  114 (900)
T KOG0956|consen   71 ------------------------------------KDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHD  114 (900)
T ss_pred             ------------------------------------cccceecccCCCceEEEEEeeccceeecccccccceeeccCchh
Confidence                                                79999999999999999999999999999999999999999999


Q ss_pred             CcCCCccccCCCC---CCCCceeEEeCCCCCCccceeceeeccC
Q psy11602        847 RWGAKSCALCPDE---SYARTELALQSPPVNCVPTLLVYMEVVF  887 (1083)
Q Consensus       847 r~~~~~C~iC~~~---~~~~~GaciqC~~~~C~~~fH~~~~~~~  887 (1083)
                      ||. ++|+||+..   ..+..||||+|+..+|++.|||.+.+..
T Consensus       115 Rfn-KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~  157 (900)
T KOG0956|consen  115 RFN-KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRA  157 (900)
T ss_pred             hhc-ceeeeecccCCccccccccceecccccchhhhhhhHhhhh
Confidence            997 799999875   5688999999999999999999765443

>PRK00960 seryl-tRNA synthetase; Provisional

Probab=99.98  E-value=6.9e-33  Score=325.65  Aligned_cols=186  Identities=18%  Similarity=0.282  Sum_probs=171.4

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeec-cccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~-~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      ..+..++|.||++.+++.+|+++++++++||||+++++ +|||+|+|+    ++||+|+|||.|+|++.|++++  ++++
T Consensus       305 L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs----~~GL~RV~eF~kvE~h~f~tpE--qs~e  378 (517)
T PRK00960        305 LRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGG----AHGLERVNEFHRIEIVWLGTPE--QVEE  378 (517)
T ss_pred             cccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCC----CCCCcccceeEEEEEEEEeCHH--HHHH
Confidence            34567899999999999999999999999999999954 999999853    7899999999999999999986  5999


Q ss_pred             HHHHHHHHHHHHHHHcCCc-eEEEE----------eccCCCCcccceeEeEEEEec---CCCceeEEEEcCCCchhhhhc
Q psy11602         95 MLDEMIQNSEEFYADLGIA-YRVVN----------IVSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLDYQSRR  160 (1083)
Q Consensus        95 ~~~~~~~~y~~if~~LgLp-yrvv~----------~~sgdlg~~as~~~diE~~~P---~~~~~~ev~s~s~cgdyqs~r  160 (1083)
                      .+++++...+.+++.|||| ||++.          +++|||++++.++||+|+|||   ++++|.+|+|||+|+||||+|
T Consensus       379 e~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~farr  458 (517)
T PRK00960        379 IRDELLKYAHILAEKLDLEYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFVEG  458 (517)
T ss_pred             HHHHHHHHHHHHHHHcCCCceEEecccccccccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhhHh
Confidence            9999999999999999999 99999          899999999999999999999   889999999999999999999


Q ss_pred             ccceeccCCCc-cccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602        161 LLVRYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKFVPA  208 (1083)
Q Consensus       161 l~i~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~  208 (1083)
                      ++|+|.+.+.. .||+|+|++|+|+|||+||+.+.| .||++|+++++.
T Consensus       459 fnIk~~~g~~~hTnctG~g~eR~l~AlLe~hG~d~~-~wPe~~r~~~~~  506 (517)
T PRK00960        459 FNIKDYKGRKLWTGCTGYGLERWVIGFLAQKGFDPE-NWPEEIRKRVGE  506 (517)
T ss_pred             hCcccCCCCeEeecceeeHHHHHHHHHHHhcCCCCC-cCCHHHHHhhcC
Confidence            99998643322 699999999999999999999998 999999999954

>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I

Probab=99.97  E-value=3e-32  Score=322.74  Aligned_cols=182  Identities=19%  Similarity=0.235  Sum_probs=170.6

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||+|++++.+|++|+.||++||+++||++++||+|.    ++++||+|+|||+|+|+|+++.+. ++|++.+.
T Consensus        97 ~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~----~~~~gl~R~rEF~~~e~h~~~~~~-e~a~~e~~  171 (472)
T TIGR00408        97 DEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYET----KHTRPFLRTREFTWQEAHTAHATA-EEAEEQVL  171 (472)
T ss_pred             CCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCC----CCCCCcceeeeeehhhhhhhhCCH-HHHHHHHH
Confidence            4789999999999999999999999999999999999999999    668999999999999999877777 78999999


Q ss_pred             HHHHHHHHHHH-HcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         98 EMIQNSEEFYA-DLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if~-~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      .++++|.+||+ .|||||+++..+++++++++.+++|+|+|||+ +++.|+++++++|+++|++|+|+|.+.++.     
T Consensus       172 ~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h  250 (472)
T TIGR00408       172 RALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAY  250 (472)
T ss_pred             HHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccccHhcCCEEECCCCCEEeeE
Confidence            99999999998 99999999999999999999999999999997 578999999999999999999999987764     


Q ss_pred             cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      ++++|++ +|+|+|||++|+++.|++||..++|++
T Consensus       251 ~~s~Gi~-eRli~~lie~~~d~~gl~~P~~iaP~q  284 (472)
T TIGR00408       251 QTSYGIS-TRVIGALIAIHSDEKGLVLPPRVAPIQ  284 (472)
T ss_pred             EccccHH-HHHHHHHHHHhCCCCceeeChhhCcce
Confidence            4555654 999999999999999999999999998

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.

>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.97  E-value=7.7e-32  Score=297.13  Aligned_cols=214  Identities=20%  Similarity=0.178  Sum_probs=174.2

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE----  269 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd----  269 (1083)
                      .|.++-.+|..++.+.+. ..||.+|.+|+++..+....               ..++...+.+   .+|++...+    
T Consensus        30 ~g~~l~~~l~~~~~~~~~-~~G~~ev~~P~l~~~~~~~~---------------~sg~~~~f~~---~~f~~~~~~~~~~   90 (261)
T cd00778          30 YGYAIWENIQKILDKEIK-ETGHENVYFPLLIPESELEK---------------EKEHIEGFAP---EVAWVTHGGLEEL   90 (261)
T ss_pred             cHHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHhhh---------------hhcchhhcCc---ceEEEEecCCccc
Confidence            356666788888888874 78999999999999555421               1233444444   466654321    


Q ss_pred             -------ceEEEEeeCCCC--Ccchhhhh-hhhcccccccc-cccCcCceeEEEeeeEEE-EEEeCCCchhHHHHHHHHH
Q psy11602        270 -------KVEQFVLTSPHD--DESWKMLD-EMIQNSEEFYA-DLDTRGIFRVHQFEKVEQ-FVLTSPHDDESWKTLDEMI  337 (1083)
Q Consensus       270 -------~~~~~~~~~~~~--~~s~~~~~-~~~~~~~~~~~-~~~trGl~Rvhqf~kvE~-f~~~~~~~~~s~~~~e~~~  337 (1083)
                             ++....++.++.  --|+++|| ++++...|||+ .++++||+|+|||.|+|+ +.+|++  |+|.+.+++|+
T Consensus        91 ~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~--e~~~~~~~~~~  168 (261)
T cd00778          91 EEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATE--EEAEEEVLQIL  168 (261)
T ss_pred             CCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCH--HHHHHHHHHHH
Confidence                   111112221111  24789999 99999999999 456799999999999999 678888  78999999999


Q ss_pred             HHHHHHHHHh-CCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEE
Q psy11602        338 QNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVH  416 (1083)
Q Consensus       338 ~~~e~~~~~L-~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~h  416 (1083)
                      +++++||+.| |||||++.+|++|++++|.+++||||||| +|+|+||+|||||+||||+|++|+|++.   +++..+||
T Consensus       169 ~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~y~~~---~g~~~~~h  244 (261)
T cd00778         169 DLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIKYQDK---DGQKEYVH  244 (261)
T ss_pred             HHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCEEECC---CCCCcCcE
Confidence            9999999999 99999999999999999999999999999 9999999999999999999999999975   45678999


Q ss_pred             eecccccchhHHHHHHHh
Q psy11602        417 MLNATACATTRVICAILE  434 (1083)
Q Consensus       417 tln~t~~a~~R~i~ailE  434 (1083)
                      | |++| +++|+|+|||-
T Consensus       245 ~-~~~g-~~~R~i~ali~  260 (261)
T cd00778         245 Q-TSWG-ISTRLIGAIIM  260 (261)
T ss_pred             E-eccc-HHHHHHHHHHh
Confidence            9 9998 77999999984

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.

>KOG0955|consensus

Probab=99.95  E-value=1.4e-29  Score=312.71  Aligned_cols=170  Identities=31%  Similarity=0.699  Sum_probs=145.2

Q ss_pred             cCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCC-CceeecCCCC
Q psy11602        686 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAE-PTCELCPNFG  764 (1083)
Q Consensus       686 ~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~-~~C~LCp~~g  764 (1083)
                      ...+++..|+||.+.+..+.|.|||||+|+++|||.|||+..+          |+|.|+|+.|...... ..|+|||.  
T Consensus       214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~i----------peg~WlCr~Cl~s~~~~v~c~~cp~--  281 (1051)
T KOG0955|consen  214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFI----------PEGQWLCRRCLQSPQRPVRCLLCPS--  281 (1051)
T ss_pred             cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCC----------CCCcEeehhhccCcCcccceEeccC--
Confidence            3457888999999999999999999999999999999997665          7899999999998755 48999999  


Q ss_pred             ccccccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeee-cC
Q psy11602        765 ENHLRGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLF-EM  843 (1083)
Q Consensus       765 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~-~i  843 (1083)
                                                            .+||||+|++|+|+||+||+|+|||.|++...|+||+.+ .|
T Consensus       282 --------------------------------------~~gAFkqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i  323 (1051)
T KOG0955|consen  282 --------------------------------------KGGAFKQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENI  323 (1051)
T ss_pred             --------------------------------------CCCcceeccCCceeeeehhhcccccccccchhhccccchhcC
Confidence                                                  899999999999999999999999999999999999987 69


Q ss_pred             ccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeeccCCCC-----------ccchhhhhHHhhhhccCCC
Q psy11602        844 PYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQP-----------PQRKLGKYKVKYVDMKSLR  909 (1083)
Q Consensus       844 p~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~~~-----------~~~~~~~~r~~y~~~~~~~  909 (1083)
                      |.+||.+ .|++|+..   +.|+||||+..+|..+||++++...+.-           ++.-....+..||..|.++
T Consensus       324 ~~aRwkL-~cy~cK~~---~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~~~~s~~~~s~~v~~~syC~~H~pp  396 (1051)
T KOG0955|consen  324 PPARWKL-TCYICKQK---GLGACIQCSKANCYTAFHVTCARRAGLYMKSNTVKELSKNGTSQSVNKISYCDKHTPP  396 (1051)
T ss_pred             cHhhhhc-eeeeeccC---CCCcceecchhhhhhhhhhhhHhhcCceEeecccccccccccccccceeeeccCCCCc
Confidence            9999985 99999986   3599999999999999999655433311           1111223456788888654

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=99.95  E-value=9.2e-30  Score=283.78  Aligned_cols=140  Identities=30%  Similarity=0.716  Sum_probs=131.0

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCc-eeecCCCCcccc
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPT-CELCPNFGENHL  768 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~-C~LCp~~g~~~~  768 (1083)
                      -+..|.+|.+.++++.|.||+||+|.++|||+|||+..+          |+|.|+|+.|..+..+.. |.+||.      
T Consensus       192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~----------peG~WlCrkCi~~~~~i~~C~fCps------  255 (669)
T COG5141         192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFL----------PEGFWLCRKCIYGEYQIRCCSFCPS------  255 (669)
T ss_pred             hhhhhHhccccccCCcceEEEecCcchhhhhhcccceec----------CcchhhhhhhcccccceeEEEeccC------
Confidence            467999999999999999999999999999999999988          789999999999987776 889999      


Q ss_pred             ccccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeee-cCccCC
Q psy11602        769 RGLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLF-EMPYSR  847 (1083)
Q Consensus       769 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~-~ip~~r  847 (1083)
                                                        ..||||.|.+|+|+|++||+|+|++.|++...|.||+++ +++.+|
T Consensus       256 ----------------------------------~dGaFkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~sr  301 (669)
T COG5141         256 ----------------------------------SDGAFKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSR  301 (669)
T ss_pred             ----------------------------------CCCceeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhh
Confidence                                              799999999999999999999999999999999999977 799999


Q ss_pred             cCCCccccCCCCCCCCceeEEeCCCCCCccceeceee
Q psy11602        848 WGAKSCALCPDESYARTELALQSPPVNCVPTLLVYME  884 (1083)
Q Consensus       848 ~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~  884 (1083)
                      |.+ .|.||+..    .|+||||...+|.+++|+.++
T Consensus       302 wkl-~C~iCk~~----~GtcIqCs~~nC~~aYHVtCA  333 (669)
T COG5141         302 WKL-GCLICKEF----GGTCIQCSYFNCTRAYHVTCA  333 (669)
T ss_pred             Hhh-eeeEEccc----Ccceeeecccchhhhhhhhhh
Confidence            995 89999985    999999999999999999443

>PRK12325 prolyl-tRNA synthetase; Provisional

Probab=99.95  E-value=5.1e-28  Score=284.89  Aligned_cols=189  Identities=15%  Similarity=0.214  Sum_probs=170.1

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ++|+.+++++|+||+|+.++.++++++.||++||+|+||++++||+|+    +++.||+|+|||+|.|+|+|+.+. +++
T Consensus        96 ~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~----~~~~GL~R~reF~~~D~h~f~~~~-~~a  170 (439)
T PRK12325         96 IKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEI----RPRFGVMRGREFLMKDAYSFDLDE-EGA  170 (439)
T ss_pred             EecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCC----CCCCCccccceEeEeccEEEeCCH-HHH
Confidence            457788899999999999999999999999999999999999999998    556799999999999999999998 789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeE-------EEEe---------------------------
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL-------EAWF---------------------------  138 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~di-------E~~~---------------------------  138 (1083)
                      .+.+.+++++|.+||+.|||+|+.|.+++|.+|+..+|+|.+       +.|.                           
T Consensus       171 ~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~  250 (439)
T PRK12325        171 RHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDE  250 (439)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999997732       1111                           


Q ss_pred             -----------cC-------------CCceeEEEEcCCCchhhhhcccceeccCCCc-----cccccccchhheeheecc
Q psy11602        139 -----------PG-------------SGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----IYATACATTRVICAILET  189 (1083)
Q Consensus       139 -----------P~-------------~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~n~tg~a~~Rli~Alle~  189 (1083)
                                 ++             ..+-+||+++.++|+.+|++|+++|.+.++.     +++.|++++|+|++|+|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~  330 (439)
T PRK12325        251 WTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEA  330 (439)
T ss_pred             hcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHHHHHHHHH
Confidence                       11             1122489999999999999999999988775     999999999999999999


Q ss_pred             ccCCCeeEecccccccc
Q psy11602        190 HQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       190 ~~~~~Gi~lP~~L~p~~  206 (1083)
                      |.|+.|++||..++|+.
T Consensus       331 ~~d~~g~~~P~~iaP~q  347 (439)
T PRK12325        331 SHDDKGIIWPESVAPFK  347 (439)
T ss_pred             hCccCCCcCCCCcCCeE
Confidence            99999999999999997

>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family

Probab=99.94  E-value=6.7e-27  Score=271.35  Aligned_cols=183  Identities=16%  Similarity=0.202  Sum_probs=156.6

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeec-cccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~-~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      .+++|+||||+++++++++|++++++||++++|++ +|||+|+|+    ++||+|+|||.|+|++.+++++  +|++.++
T Consensus       308 ~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGs----trGL~RvhEF~kvE~v~~~tpE--ea~e~~e  381 (520)
T TIGR00415       308 PGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGG----AKGLDRVHEFLRVECVWIAEPE--ETEEIRD  381 (520)
T ss_pred             CceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCC----CCCCceeeEEEEEEEEEEeCHH--HHHHHHH
Confidence            47899999999999999999999999999999955 799999964    6999999999999999988775  5999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEec-----------cCCCCcccceeEeEEEEecCCCce---eEEEEcCCCchhhhhcccc
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIV-----------SGALNHAAAKKLDLEAWFPGSGAF---RELVSCSNCLDYQSRRLLV  163 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~-----------sgdlg~~as~~~diE~~~P~~~~~---~ev~s~s~cgdyqs~rl~i  163 (1083)
                      +|++.|+.|++.|+||||++.++           +++|+++++.+||+|+|+|+...|   ..+.|+...||+||++|+|
T Consensus       382 ~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~hF~k~F~I  461 (520)
T TIGR00415       382 KTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGTHFIEGFRI  461 (520)
T ss_pred             HHHHHHHHHHHHcCCCeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCCCCCcEEEEeechhcccccccCc
Confidence            99999999999999999999755           677999999999999999988753   4556666669999999999


Q ss_pred             eeccCCCc-cccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602        164 RYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKFVPA  208 (1083)
Q Consensus       164 ~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~  208 (1083)
                      +-.+.... .+|.|++++|+|.|+|.+|+-+ -..||..++.-++.
T Consensus       462 ~~~~~~~a~ttC~G~gleR~i~Ali~~HG~d-~~~Wp~~vr~~~~~  506 (520)
T TIGR00415       462 KDAKGLNIWTGCTGIGISRWIVGFLAQKGFE-FDDWHDFIGEKIEG  506 (520)
T ss_pred             ccCCCCeEEEeeeeccHHHHHHHHHHHhCCC-hhhCCHHHHHHhcc
Confidence            83222222 6677999999999999998764 25799887776643

The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.

>KOG4163|consensus

Probab=99.94  E-value=5.6e-28  Score=267.86  Aligned_cols=232  Identities=16%  Similarity=0.147  Sum_probs=199.6

Q ss_pred             CCCCCcccCCCCCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEE
Q psy11602          1 VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVE   80 (1083)
Q Consensus         1 v~~~g~e~~~~~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e   80 (1083)
                      ||-+|+.+    |+    +..+++||||+.|+.+|++||.|||||||+|.|+.++-|+|.    +++.+++|.|||.+.|
T Consensus       148 VTr~G~se----Le----epiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEf----k~p~PFlRtrEFLWQE  215 (551)
T KOG4163|consen  148 VTRAGNSE----LE----EPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEF----KHPQPFLRTREFLWQE  215 (551)
T ss_pred             EEecCCcc----cc----cceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeec----cCCCcchhhhHHHHhc
Confidence            56666666    44    789999999999999999999999999999999999999999    8899999999999999


Q ss_pred             EEEEeCCCchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhh
Q psy11602         81 QFVLTSPHDDESWKMLDEMIQNSEEFYA-DLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR  159 (1083)
Q Consensus        81 ~~~~~~~~~e~s~~~~~~~~~~y~~if~-~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~  159 (1083)
                      .++.+... ++|++..-++++.|.+||. .|.+|+........+.++++.+++.||+++|..++-++-++.|++|++||+
T Consensus       216 GHTAfat~-~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSk  294 (551)
T KOG4163|consen  216 GHTAFATP-EEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSK  294 (551)
T ss_pred             CcchhCCH-hHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHH
Confidence            99998888 7899999999999999987 889999999999999999999999999999999999999999999999999


Q ss_pred             cccceeccC-CCc-----cccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHH
Q psy11602        160 RLLVRYGQT-KQK-----IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQ  233 (1083)
Q Consensus       160 rl~i~y~~~-~~~-----~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~  233 (1083)
                      .|+|.|.+. .+.     -|+.|++ +|.|.+++..|+|+.|++||+.+++++     +      |+.|+.|....++.+
T Consensus       295 mF~i~~ed~~~g~~~fv~QnSWg~s-TRtiGvmiM~HgDdkGLvLPPrVA~vQ-----v------VvvP~git~~~s~~~  362 (551)
T KOG4163|consen  295 MFEIVFEDPGEGEKEFVWQNSWGLS-TRTIGVMIMTHGDDKGLVLPPRVAPVQ-----V------VVVPVGITDATSEED  362 (551)
T ss_pred             hhceeecCCCccchhheeecccccc-cceeeEEEEEecCCcccccCCcccceE-----E------EEEeccccccCchHH
Confidence            999999987 333     6666766 999999999999999999999999999     4      888999874444333


Q ss_pred             hhhhcccchhhhhhhhhccccccccccCc-eEeeec
Q psy11602        234 KKQKEGMKKKLTMSLFSQVGSHGRDTRGI-FRVHQF  268 (1083)
Q Consensus       234 ~~k~~~~k~~~~~~~~~e~g~h~~dl~~i-~Rv~qf  268 (1083)
                      .           ......+.+....|.+. +|++.+
T Consensus       363 ~-----------~~l~~a~~~v~~~L~~~giR~~~D  387 (551)
T KOG4163|consen  363 K-----------QELLDACSAVESRLLGAGIRAEAD  387 (551)
T ss_pred             H-----------HHHHHHHHHHHHHHhccCceEeec
Confidence            3           22333444444444444 555553

>PRK08661 prolyl-tRNA synthetase; Provisional

Probab=99.91  E-value=9.4e-25  Score=259.46  Aligned_cols=230  Identities=20%  Similarity=0.223  Sum_probs=186.8

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ce-
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KV-  271 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~-  271 (1083)
                      |..|-..|..++.+.+. ..||.+|..|.++..+...+.               .++...+..   .+|++...+  +. 
T Consensus        43 g~~i~~~i~~~~~~~~~-~~G~~ev~~P~l~~~~~~~~~---------------~~h~~~f~~---e~~~v~~~~~~~~~  103 (477)
T PRK08661         43 GYAIWENIQKILDKLFK-ETGHENVYFPLLIPESLLEKE---------------KEHVEGFAP---EVAWVTHGGGEKLE  103 (477)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhh---------------cCchhhccc---ccEEEEccCCCccC
Confidence            44445677888777774 789999999999995554221               233333344   355553321  11 


Q ss_pred             EEEEeeCCCC-----------Ccchhhhh-hhhcccccccccccCcCceeEEEeeeEEEE-EEeCCCchhHHHHHHHHHH
Q psy11602        272 EQFVLTSPHD-----------DESWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQF-VLTSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       272 ~~~~~~~~~~-----------~~s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f-~~~~~~~~~s~~~~e~~~~  338 (1083)
                      +.+. ..|..           -.||++|| ++++..++||+...++||+|+|||.+.|+- .++.+  ++|.+.+++|++
T Consensus       104 e~l~-LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~--eea~~e~~~~l~  180 (477)
T PRK08661        104 EKLA-LRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATE--EEAEEETLEMLE  180 (477)
T ss_pred             ceEE-EecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCH--HHHHHHHHHHHH
Confidence            1222 22211           34899999 999999999998889999999999999994 45666  789999999999


Q ss_pred             HHHHHH-HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEe
Q psy11602        339 NSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHM  417 (1083)
Q Consensus       339 ~~e~~~-~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~ht  417 (1083)
                      .+.+|| +.|||||+++..+.+|++++|.++||||+|||. |++.|+++++++++++|+|++|+|.+.   +++..|||+
T Consensus       181 ~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~i~y~d~---~g~~~~v~~  256 (477)
T PRK08661        181 IYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFDIKFQDK---DGKLEYVHQ  256 (477)
T ss_pred             HHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcCCEEECC---CCCEeeeEE
Confidence            999999 999999999999999999999999999999995 999999999999999999999999876   567889999


Q ss_pred             ecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        418 LNATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       418 ln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      . +.|+. +|+|+||||+|+++.|+++|..++|+-
T Consensus       257 ~-s~G~~-~R~i~alie~~~D~~Gl~lP~~iAP~q  289 (477)
T PRK08661        257 T-SWGVS-TRLIGALIMTHGDDKGLVLPPKIAPIQ  289 (477)
T ss_pred             e-cccHH-HHHHHHHHHHhCccCCCccCcccCCCe
Confidence            7 67765 999999999999999999999999984

>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family

Probab=99.91  E-value=8.9e-25  Score=253.74  Aligned_cols=231  Identities=13%  Similarity=0.101  Sum_probs=177.6

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEee-------
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVH-------  266 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~-------  266 (1083)
                      .|+.|-++|..|+.+.+....||.++.+|.+|..+.+.+.+                +.+.+.+   ++|.+.       
T Consensus       221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~g----------------hl~gF~~---e~y~Vt~~~~d~d  281 (520)
T TIGR00415       221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMR----------------YLEGLPE---GMYYCCAPKRDPE  281 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccC----------------CCCCCch---hheEEecCCCCcc
Confidence            34556689999998766445699999999999977775553                2222222   122220       


Q ss_pred             ------------------------ec-----cceEEEEeeCCCCC--cchhhhh-hhhccc-ccccccc-cCcCceeEEE
Q psy11602        267 ------------------------QF-----EKVEQFVLTSPHDD--ESWKMLD-EMIQNS-EEFYADL-DTRGIFRVHQ  312 (1083)
Q Consensus       267 ------------------------qf-----d~~~~~~~~~~~~~--~s~~~~~-~~~~~~-~~~~~~~-~trGl~Rvhq  312 (1083)
                                              ..     -.++.+++...+.+  -++++|| ++++.+ .|||+.. .+|||+|+||
T Consensus       282 ~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhE  361 (520)
T TIGR00415       282 LFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHE  361 (520)
T ss_pred             hhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeE
Confidence                                    00     02222222222222  2567888 777745 6999954 5899999999


Q ss_pred             eeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEe---------cc--CCCcchhhhceeeEEEeeCCCCc-
Q psy11602        313 FEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVN---------IV--SGALNHAAAKKLDLEAWFPGSGA-  380 (1083)
Q Consensus       313 f~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~---------~~--~~dl~~~a~~~~DiE~w~P~~~~-  380 (1083)
                      |.|+|+|.+++|  |+|++++++|++++++|++.|+|||||+.         ++  ++||+|++++|||+|+|||+++. 
T Consensus       362 F~kvE~v~~~tp--Eea~e~~e~mle~~~~~l~~L~Lpyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~  439 (520)
T TIGR00415       362 FLRVECVWIAEP--EETEEIRDKTLELAEDAADELDLEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDE  439 (520)
T ss_pred             EEEEEEEEEeCH--HHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCC
Confidence            999999999999  68999999999999999999999999986         22  77899999999999999999984 


Q ss_pred             --EEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCC
Q psy11602        381 --FRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPA  454 (1083)
Q Consensus       381 --y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~  454 (1083)
                        .+-|.|++..+|+++++.+|+-       ++.+|+||. +.|+.++|++.|+|-+|.-+- -.||+..|.-+|+
T Consensus       440 ~~g~AlqS~n~Hg~hF~k~F~I~~-------~~~~~a~tt-C~G~gleR~i~Ali~~HG~d~-~~Wp~~vr~~~~~  506 (520)
T TIGR00415       440 RKGVAVTSANVHGTHFIEGFRIKD-------AKGLNIWTG-CTGIGISRWIVGFLAQKGFEF-DDWHDFIGEKIEG  506 (520)
T ss_pred             CCCcEEEEeechhcccccccCccc-------CCCCeEEEe-eeeccHHHHHHHHHHHhCCCh-hhCCHHHHHHhcc
Confidence              5678888888999999999992       235799998 999999999999999886432 2689999888775

The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.

>PRK03991 threonyl-tRNA synthetase; Validated

Probab=99.90  E-value=8.3e-24  Score=256.49  Aligned_cols=183  Identities=19%  Similarity=0.190  Sum_probs=157.1

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeecc-ccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVST-CFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~-~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      +++++|+||+|.++..+|+++++||++||+++||+++ +||+|++   ..++||+|+|||+|.|+|+|+.+. ++|+++|
T Consensus       280 ~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~---g~l~GL~RvReF~~~D~h~f~~~~-eqa~~e~  355 (613)
T PRK03991        280 KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQR---GELVGLKRLRAFTMPDMHTLCKDM-EQAMEEF  355 (613)
T ss_pred             CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCC---CCCcCcccccceEeeeEEEEECCH-HHHHHHH
Confidence            4689999999999999999999999999999999999 9999984   347999999999999999999987 6899999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCC-------------------------Ccccce--eEeEEEEecCCCceeEEEE
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGAL-------------------------NHAAAK--KLDLEAWFPGSGAFRELVS  149 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdl-------------------------g~~as~--~~diE~~~P~~~~~~ev~s  149 (1083)
                      +++++.+.++|+.||+||+++.+++++.                         |.++.+  ++|+.+.+. .++-.++++
T Consensus       356 ~~~l~~~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~-~gr~~q~~T  434 (613)
T PRK03991        356 EKQYEMILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDS-LGRPIENPT  434 (613)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCC-CCCEEEEee
Confidence            9999999999999999999998876543                         333343  344445443 566688886


Q ss_pred             cCCCchhhhhcccceeccCCCc------ccccccc-chhheeheeccccCC----CeeEecccccccc
Q psy11602        150 CSNCLDYQSRRLLVRYGQTKQK------IYATACA-TTRVICAILETHQTE----TGVRIPDCLRKFV  206 (1083)
Q Consensus       150 ~s~cgdyqs~rl~i~y~~~~~~------~n~tg~a-~~Rli~Alle~~~~~----~Gi~lP~~L~p~~  206 (1083)
                      ...-. ..|++|+++|.+.++.      |++++++ ++|+|+||||++.++    .|++||..|+|+.
T Consensus       435 ~qld~-~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~q  501 (613)
T PRK03991        435 VQIDV-ENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQ  501 (613)
T ss_pred             eecCc-ccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCce
Confidence            55444 5599999999987664      7888887 899999999999988    7899999999997

>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes

Probab=99.89  E-value=2.7e-23  Score=215.52  Aligned_cols=122  Identities=32%  Similarity=0.600  Sum_probs=114.1

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCC-CCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLP-EASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s-~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +|+.+++++|+||+|.+++.++++++.+ +++||++++|+++|||+|.    ++++||+|+|||+|.|++.|+.+  +++
T Consensus        50 ~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~----~~~~gl~R~reF~~~e~~~f~~~--~~~  123 (173)
T PF00587_consen   50 KDRGDEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEA----RPTRGLFRLREFTMDEMHIFCTP--EQS  123 (173)
T ss_dssp             EETTTEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSS----SSBSTTTS-SEEEEEEEEEEESS--HHH
T ss_pred             eecccccEEeccccccceeeeecceeeeccccCCeEEeeccccccccc----ccccccceeeEeeeeceEEEeCC--ccc
Confidence            4556678999999999999999999999 9999999999999999999    78899999999999999999999  469


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-ceEEEEeccCCCCcccceeEeEEEEecCC
Q psy11602         93 WKMLDEMIQNSEEFYADLGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGS  141 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgL-pyrvv~~~sgdlg~~as~~~diE~~~P~~  141 (1083)
                      .+.++++++.+.+||+.||| ||+++..+++++++.+++++|+|+|+|++
T Consensus       124 ~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~  173 (173)
T PF00587_consen  124 EEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIEAWFPAQ  173 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEEEEETCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHHHhCcCC
Confidence            99999999999999999999 99999999999999999999999999974

seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....

>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I

Probab=99.89  E-value=1.3e-23  Score=249.27  Aligned_cols=226  Identities=18%  Similarity=0.212  Sum_probs=182.0

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec------c----
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF------E----  269 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf------d----  269 (1083)
                      ..|..++...+. ..||.+|..|.++..+...+.+               ++...+..   .+|++...      +    
T Consensus        42 ~~I~~~i~~~~~-~~G~~ev~~P~l~~~~~~~~~~---------------~h~~~f~~---e~f~v~~~g~~~~~e~l~L  102 (472)
T TIGR00408        42 KNIQKILRNILD-EIGHEEVYFPMLIPESELAKEK---------------DHIKGFEP---EVYWITHGGLSKLDEPLAL  102 (472)
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCccCCHHHHHhhc---------------chhhhcch---hcEEEecCCCCccCCcEEE
Confidence            455666655553 6799999999999966554322               12222223   35554331      1    


Q ss_pred             -ceEEEEeeCC--CCCcchhhhh-hhhccccccccccc-CcCceeEEEeeeEEE-EEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        270 -KVEQFVLTSP--HDDESWKMLD-EMIQNSEEFYADLD-TRGIFRVHQFEKVEQ-FVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       270 -~~~~~~~~~~--~~~~s~~~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~kvE~-f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                       ++...+++..  ..-.||++|| ++++...+||.... ++||+|+|+|.+.|+ +.++.+  +++.+.+++|++.+++|
T Consensus       103 rPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~--e~a~~e~~~~l~~y~~i  180 (472)
T TIGR00408       103 RPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATA--EEAEEQVLRALDIYKEF  180 (472)
T ss_pred             eCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCH--HHHHHHHHHHHHHHHHH
Confidence             2222222210  1235899999 99999999999665 899999999999999 467777  78999999999999999


Q ss_pred             HH-HhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccc
Q psy11602        344 YA-DLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA  422 (1083)
Q Consensus       344 ~~-~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~  422 (1083)
                      |. .|||||+++..+.+|++++|..++|+|+|||. +++.|+++++++++++|+|++|+|.+.   +++..++|+ ++.|
T Consensus       181 ~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~sk~f~i~y~~~---~g~~~~~h~-~s~G  255 (472)
T TIGR00408       181 IENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNFAKTFEIKFETP---TGDKEYAYQ-TSYG  255 (472)
T ss_pred             HHhccCCeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccccHhcCCEEECC---CCCEEeeEE-cccc
Confidence            98 99999999999999999999999999999996 699999999999999999999999976   456889998 7888


Q ss_pred             cchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        423 CATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       423 ~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      +. +|+|+||||+|+++.|+++|..++|+-
T Consensus       256 i~-eRli~~lie~~~d~~gl~~P~~iaP~q  284 (472)
T TIGR00408       256 IS-TRVIGALIAIHSDEKGLVLPPRVAPIQ  284 (472)
T ss_pred             HH-HHHHHHHHHHhCCCCceeeChhhCcce
Confidence            75 999999999999999999999999984

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.

>KOG1244|consensus

Probab=99.88  E-value=2.4e-23  Score=219.18  Aligned_cols=107  Identities=24%  Similarity=0.554  Sum_probs=100.1

Q ss_pred             ccccCCCceeeccccCCCCCCCCc-----eeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCcccccc
Q psy11602        623 DFSKFSKILVCCVCLGERSDDVNE-----IVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVC  697 (1083)
Q Consensus       623 ~~~~~~~~~~c~~c~g~~~~~~~~-----l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC  697 (1083)
                      +++-|+.  ||+|||||...|+++     |++|++||+++|++|+||+.+|+..+.+|  +|+||+++       .|+||
T Consensus       219 d~a~Pn~--YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~y--rwqcieck-------~csic  287 (336)
T KOG1244|consen  219 DIAQPNP--YCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTY--RWQCIECK-------YCSIC  287 (336)
T ss_pred             ccccCCc--ccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhh--eeeeeecc-------eeccc
Confidence            3556677  999999999999988     99999999999999999999999999999  99999999       99999


Q ss_pred             CCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        698 LGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       698 ~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      .  +++++++++|||.|+.+||++|..++.+++        |+|.|-|..|..
T Consensus       288 g--tsenddqllfcddcdrgyhmyclsppm~ep--------pegswsc~KOG~  330 (336)
T KOG1244|consen  288 G--TSENDDQLLFCDDCDRGYHMYCLSPPMVEP--------PEGSWSCHLCLE  330 (336)
T ss_pred             c--CcCCCceeEeecccCCceeeEecCCCcCCC--------CCCchhHHHHHH
Confidence            9  888999999999999999999999998865        899999999964

>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain

Probab=99.87  E-value=3.7e-22  Score=215.88  Aligned_cols=164  Identities=24%  Similarity=0.338  Sum_probs=148.7

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ++.++|+||.|.+++.++++++.++++||++++++++|||+|.+++    +|+.|+|||+|.|++.|+.++  ++.+.+.
T Consensus        60 ~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~----~gl~R~reF~q~e~~~~~~~~--~~~~~~~  133 (235)
T cd00670          60 DTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR----RGLMRVREFRQVEYVVFGEPE--EAEEERR  133 (235)
T ss_pred             CCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCC----CCChhheeeeeceEEEEcCHH--HHHHHHH
Confidence            6889999999999999999999999999999999999999999543    799999999999999999886  4888999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCC--------cccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALN--------HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK  169 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg--------~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~  169 (1083)
                      ++++.+.++|+.|||||+++..+.++++        +.+..++|+|+|+|..+++.+|++++++.++++++..+++...+
T Consensus       134 e~~~~~~~~l~~lgl~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  213 (235)
T cd00670         134 EWLELAEEIARELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDG  213 (235)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCC
Confidence            9999999999999999999999999999        88889999999999768899999999999999999999876544


Q ss_pred             Cc----cccccccchhheehee
Q psy11602        170 QK----IYATACATTRVICAIL  187 (1083)
Q Consensus       170 ~~----~n~tg~a~~Rli~All  187 (1083)
                      +.    +...+++++|+|+|||
T Consensus       214 ~~~~~~~~~~~~~~eR~l~all  235 (235)
T cd00670         214 GGRAHTGCGGAGGEERLVLALL  235 (235)
T ss_pred             CceeeEEEeCccHHHHHHHHHC
Confidence            32    3334488899999986

This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain

Probab=99.85  E-value=3.7e-21  Score=216.33  Aligned_cols=178  Identities=16%  Similarity=0.181  Sum_probs=147.6

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .+++++|+||+|.+++.+++++++++++||+|++++++|||+|+++   +++||+|+|||+++|++.|+.++.  +++.+
T Consensus        82 ~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~---~~~Gl~R~reF~q~e~~i~~~~e~--~~~e~  156 (298)
T cd00771          82 EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSG---ALHGLTRVRGFTQDDAHIFCTPDQ--IKEEI  156 (298)
T ss_pred             CCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCC---CCCCccccccEEECCEEEEeCCcc--hHHHH
Confidence            3468999999999999999999999999999999999999999852   589999999999999999988864  88899


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCC-------------------------------CcccceeEeEEEEecC-CCce
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGAL-------------------------------NHAAAKKLDLEAWFPG-SGAF  144 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdl-------------------------------g~~as~~~diE~~~P~-~~~~  144 (1083)
                      +++++.+.++|+.|||+++.+.+.+++.                               |.+|.+-..||+.|++ .++.
T Consensus       157 ~e~l~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~  236 (298)
T cd00771         157 KGVLDLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGRE  236 (298)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCe
Confidence            9999999999999999999999888761                               1122222445555554 4666


Q ss_pred             eEEEEcCCCchhhhhcccceeccCCCc------cccc-cccchhheeheeccccCCCeeEecccccc
Q psy11602        145 RELVSCSNCLDYQSRRLLVRYGQTKQK------IYAT-ACATTRVICAILETHQTETGVRIPDCLRK  204 (1083)
Q Consensus       145 ~ev~s~s~cgdyqs~rl~i~y~~~~~~------~n~t-g~a~~Rli~Alle~~~~~~Gi~lP~~L~p  204 (1083)
                      .+++++. .+..+++||+|+|.+.+|.      ++.+ ..+++|+|++|||+|..    .||.-|+|
T Consensus       237 ~q~~t~q-ld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g----~~P~wlaP  298 (298)
T cd00771         237 WQCSTIQ-LDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAG----KFPLWLAP  298 (298)
T ss_pred             eecceeE-eeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhCC----CCCCccCc
Confidence            7777877 7888899999999887664      4444 44569999999999876    78887776

ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>PLN02837 threonine-tRNA ligase

Probab=99.85  E-value=2.5e-21  Score=236.61  Aligned_cols=182  Identities=15%  Similarity=0.174  Sum_probs=157.5

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .|+.++.++|+||+|..++.+|++++.||++||++++|+++|||+|+.  | .++||+|+|||+|.|+|.|++++  +++
T Consensus       297 ~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~--g-~~~GL~RvreF~~~e~h~f~~~~--q~~  371 (614)
T PLN02837        297 MDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELS--G-SLHGLFRVRGFTQDDAHIFCLED--QIK  371 (614)
T ss_pred             cCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCC--C-CCcCcccccceEECeEEEEeCHH--HHH
Confidence            366677889999999999999999999999999999999999999993  2 38899999999999999999986  499


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCC-------------------------------CCcccceeEeEEEEecCC-
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGA-------------------------------LNHAAAKKLDLEAWFPGS-  141 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgd-------------------------------lg~~as~~~diE~~~P~~-  141 (1083)
                      +.++.++++|++||+.|||||+++.++++.                               .|.+|.+...||+.+++. 
T Consensus       372 ~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~  451 (614)
T PLN02837        372 DEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDAL  451 (614)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccC
Confidence            999999999999999999999999998863                               244677777888888875 


Q ss_pred             CceeEEEEcCCCchhhhhcccceeccCCCc-----c---ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        142 GAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----I---YATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       142 ~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~---n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      ++..+++++. .+.+++++|+++|.+.++.     |   +..| +++|+|++|+|+|.+.    ||..|+|++
T Consensus       452 gr~~q~~tiq-ldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G-~~eRlia~Lie~~~g~----~P~~laP~q  518 (614)
T PLN02837        452 GRKWQCSTIQ-VDFNLPERFDITYVDSNSEKKRPIMIHRAILG-SLERFFGVLIEHYAGD----FPLWLAPVQ  518 (614)
T ss_pred             Cceeeeccee-EeecchhhcCcEEECCCCCccCCEEEEcCCcc-CHHHHHHHHHHHcCCC----CCCCCCCcc
Confidence            7888888888 7778899999999988764     2   3334 7899999999998764    888888876

>PRK03991 threonyl-tRNA synthetase; Validated

Probab=99.78  E-value=5.4e-19  Score=214.77  Aligned_cols=230  Identities=20%  Similarity=0.242  Sum_probs=179.8

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEE
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQ  273 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~  273 (1083)
                      .|.+|-.+|..|+.+.+. ..||.||.+|.+++                .......++.+.+++   .+|++...+  ++
T Consensus       225 ~G~~i~~~L~~~~~~~~~-~~G~~~V~tP~~~~----------------~~~~~~sgh~~~f~e---~my~v~~~~--e~  282 (613)
T PRK03991        225 KGRLIRDLLEDYVYNLVV-ELGAMPVETPIMYD----------------LSHPAIREHADKFGE---RQYRVKSDK--KD  282 (613)
T ss_pred             HHHHHHHHHHHHHHHHHH-HCCCEEEECCeecC----------------hhHHhhcccccccch---hceEecCCC--ce
Confidence            355566888999888875 78999999999999                444455667777777   688875433  22


Q ss_pred             EEee---C-------CCCCcchhhhh-hhhcccc-cccccc--cCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602        274 FVLT---S-------PHDDESWKMLD-EMIQNSE-EFYADL--DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       274 ~~~~---~-------~~~~~s~~~~~-~~~~~~~-~~~~~~--~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~  339 (1083)
                      +.+-   -       ...-.||++|| ++++.+. |||...  .++||+|+|||++.|++.||.|. ++++++++++++.
T Consensus       283 l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~-eqa~~e~~~~l~~  361 (613)
T PRK03991        283 LMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDM-EQAMEEFEKQYEM  361 (613)
T ss_pred             EEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCH-HHHHHHHHHHHHH
Confidence            2211   1       11234999999 9999999 999844  47999999999999999999974 6899999999999


Q ss_pred             HHHHHHHhCCcEEEEeccCCCc-------------------------chhhh--ceeeEEEeeCCCCcEEeeecccCccc
Q psy11602        340 SEEFYADLGIAYRVVNIVSGAL-------------------------NHAAA--KKLDLEAWFPGSGAFRELVSCSNCLA  392 (1083)
Q Consensus       340 ~e~~~~~L~lpyRvv~~~~~dl-------------------------~~~a~--~~~DiE~w~P~~~~y~Ev~S~sn~~d  392 (1083)
                      +.++|+.||+||+++..+++|.                         |.+++  -|+|+.+.+ +.|+-.++++.. .+.
T Consensus       362 ~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d-~~gr~~q~~T~q-ld~  439 (613)
T PRK03991        362 ILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFID-SLGRPIENPTVQ-IDV  439 (613)
T ss_pred             HHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeC-CCCCEEEEeeee-cCc
Confidence            9999999999999999887664                         22333  344555544 567777877443 444


Q ss_pred             ccccccceEEecccCCCCceeeEEeecccccc-hhHHHHHHHhhccCC----CceecCcccccc
Q psy11602        393 YQSRRLLVRYGQTKKMNEKIEFVHMLNATACA-TTRVICAILETHQTE----TGVRIPDCLRKF  451 (1083)
Q Consensus       393 ~qarrl~iry~~~~~~~~~~~~~htln~t~~a-~~R~i~ailEn~q~~----~Gi~iP~~L~py  451 (1083)
                      ..+.|++|.|.+.   +++..+++++..+++. ++|+|+||||+|.++    .|++||..|+|+
T Consensus       440 ~~~~~f~l~y~d~---~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~  500 (613)
T PRK03991        440 ENAERFGIKYVDE---NGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPT  500 (613)
T ss_pred             ccchhCCCEEECC---CCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCc
Confidence            5589999999976   4566789999888885 999999999999998    679999999998

>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain

Probab=99.78  E-value=1.5e-19  Score=195.46  Aligned_cols=207  Identities=17%  Similarity=0.175  Sum_probs=158.7

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec------c----
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF------E----  269 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf------d----  269 (1083)
                      .+|..++.+.+. ..||.+|.+|.+...+.....+                +...+.+   .+|++...      +    
T Consensus         6 ~~l~~~~~~~~~-~~G~~ei~~P~l~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~~~~~~~L   65 (235)
T cd00670           6 RALERFLDDRMA-EYGYQEILFPFLAPTVLFFKGG----------------HLDGYRK---EMYTFEDKGRELRDTDLVL   65 (235)
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCeEcCHHHHhhcC----------------Ccccchh---hcCeeccCcccccCCeEEE
Confidence            455556555553 7899999999999965553221                1111111   22333211      0    


Q ss_pred             -ceEEEEeeC--CCCCcchhhhh-hhhcccccccccccC-cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHH
Q psy11602        270 -KVEQFVLTS--PHDDESWKMLD-EMIQNSEEFYADLDT-RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFY  344 (1083)
Q Consensus       270 -~~~~~~~~~--~~~~~s~~~~~-~~~~~~~~~~~~~~t-rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~  344 (1083)
                       +....+++.  ...-.+|++|| ++++...|||+.... +|+.|+|||.++|+..++.+  +++.+.++++++.+.++|
T Consensus        66 rP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~--~~~~~~~~e~~~~~~~~l  143 (235)
T cd00670          66 RPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP--EEAEEERREWLELAEEIA  143 (235)
T ss_pred             ecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH--HHHHHHHHHHHHHHHHHH
Confidence             000011111  11123567788 888999999996655 59999999999999999999  478999999999999999


Q ss_pred             HHhCCcEEEEeccCCCcc--------hhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEE
Q psy11602        345 ADLGIAYRVVNIVSGALN--------HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVH  416 (1083)
Q Consensus       345 ~~L~lpyRvv~~~~~dl~--------~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~h  416 (1083)
                      +.|||||+++..+.++++        +.+..++|+|+|+|.+++|.||+++|++.|+++++..+++..+    +...++|
T Consensus       144 ~~lgl~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  219 (235)
T cd00670         144 RELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDED----GGGRAHT  219 (235)
T ss_pred             HHcCCcEEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccC----CCceeeE
Confidence            999999999999999999        8999999999999988999999999999999999999987642    3457999


Q ss_pred             eecccccchhHHHHHHH
Q psy11602        417 MLNATACATTRVICAIL  433 (1083)
Q Consensus       417 tln~t~~a~~R~i~ail  433 (1083)
                      +++++ ++++|+|+|||
T Consensus       220 ~~~~~-~~~eR~l~all  235 (235)
T cd00670         220 GCGGA-GGEERLVLALL  235 (235)
T ss_pred             EEeCc-cHHHHHHHHHC
Confidence            99999 89999999986

This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain

Probab=99.77  E-value=2.7e-20  Score=209.43  Aligned_cols=224  Identities=15%  Similarity=0.167  Sum_probs=169.4

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceE
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVE  272 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~  272 (1083)
                      .|+.+-.+|..++.+.+. ..||.+|.+|.++..+...+                .++.+.+.+   .+|++...+ ...
T Consensus        28 ~g~~l~~~l~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~----------------sg~~~~~~~---~my~~~~~~~~l~   87 (298)
T cd00771          28 KGAIIRNELEDFLRELQR-KRGYQEVETPIIYNKELWET----------------SGHWDHYRE---NMFPFEEEDEEYG   87 (298)
T ss_pred             cHHHHHHHHHHHHHHHHH-HcCCEEEECCeecCHHHHhh----------------CCCcccccc---CceEeccCCceEE
Confidence            345556788888888774 78999999999999554422                233333344   466663322 111


Q ss_pred             EEEee-----CC--CCCcchhhhh-hhhcccccccccc--cCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHH
Q psy11602        273 QFVLT-----SP--HDDESWKMLD-EMIQNSEEFYADL--DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEE  342 (1083)
Q Consensus       273 ~~~~~-----~~--~~~~s~~~~~-~~~~~~~~~~~~~--~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~  342 (1083)
                      .-+-+     ..  +...||++|| ++++...|||+..  +++||+|+|||+++|+..++.+  +++.+.+++|+.++++
T Consensus        88 LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~--e~~~~e~~e~l~~~~~  165 (298)
T cd00771          88 LKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTP--DQIKEEIKGVLDLIKE  165 (298)
T ss_pred             EcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCC--cchHHHHHHHHHHHHH
Confidence            11111     11  1134788999 9999999999854  4899999999999999999998  5788999999999999


Q ss_pred             HHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCc--------------------------------
Q psy11602        343 FYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC--------------------------------  390 (1083)
Q Consensus       343 ~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~--------------------------------  390 (1083)
                      +|+.|||++++|.+++.+    +...+|+|+|+|+++.|+|+.|+||.                                
T Consensus       166 ~l~~lgl~~~~i~l~~~~----~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~t  241 (298)
T cd00771         166 VYSDFGFFDYKVELSTRP----EKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCST  241 (298)
T ss_pred             HHHHcCCCcEEEEEEcCh----hHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecce
Confidence            999999999999999998    56689999999999988888777665                                


Q ss_pred             ---ccccccccceEEecccCCCCceeeEEeeccccc-chhHHHHHHHhhccCCCceecCccccc
Q psy11602        391 ---LAYQSRRLLVRYGQTKKMNEKIEFVHMLNATAC-ATTRVICAILETHQTETGVRIPDCLRK  450 (1083)
Q Consensus       391 ---~d~qarrl~iry~~~~~~~~~~~~~htln~t~~-a~~R~i~ailEn~q~~~Gi~iP~~L~p  450 (1083)
                         +...++|.+|+|.++   +++.+++.++.-+.+ +++|+|++|||.|+.    ++|--|+|
T Consensus       242 ~qld~~~~~~f~l~y~~~---~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g----~~P~wlaP  298 (298)
T cd00771         242 IQLDFNLPERFDLTYIGE---DGEKKRPVMIHRAILGSIERFIGILIEHYAG----KFPLWLAP  298 (298)
T ss_pred             eEeeccChhhcCCEEEcc---CCCccCCEEEEeCCCCcHHHHHHHHHHhhCC----CCCCccCc
Confidence               224578999999876   445667555544433 579999999999985    78888776

ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.75  E-value=1.8e-18  Score=213.34  Aligned_cols=185  Identities=14%  Similarity=0.168  Sum_probs=143.3

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      +..|+.+++++|+||+|.+++.+|++++.||++||+|+|++++|||+|..+   .++||+|+|||+|.|++.|+.++  +
T Consensus       321 y~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~d~~~f~~~~--~  395 (639)
T PRK12444        321 YFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSG---ALNGLLRVRTFCQDDAHLFVTPD--Q  395 (639)
T ss_pred             CeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCc---CCcCcceeeeeEEccEEEECCHH--H
Confidence            455778889999999999999999999999999999999999999999942   28899999999999999998775  4


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEE--eccCCCCc----------------------------ccceeEeEEEEecCC
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIAYRVVN--IVSGALNH----------------------------AAAKKLDLEAWFPGS  141 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLpyrvv~--~~sgdlg~----------------------------~as~~~diE~~~P~~  141 (1083)
                      +++.++++++.+.+||+.|||||++.-  .|..-+|.                            ++++...+|+.+.+.
T Consensus       396 ~~~e~~~~~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~  475 (639)
T PRK12444        396 IEDEIKSVMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDA  475 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecC
Confidence            999999999999999999999998622  22223444                            455666778777753


Q ss_pred             Cc-eeEEEEcCCCchhhhhcccceeccCCCc------cc-cccccchhheeheeccccCCCeeEecccccccc
Q psy11602        142 GA-FRELVSCSNCLDYQSRRLLVRYGQTKQK------IY-ATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       142 ~~-~~ev~s~s~cgdyqs~rl~i~y~~~~~~------~n-~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      .+ -.++++. .++-+.+.+|+++|.+.+|.      ++ +.+.+++|+|++|++++    |..+|..++|..
T Consensus       476 ~~~~~~~~t~-~~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~q  543 (639)
T PRK12444        476 LNRSHQCGTI-QLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPVQ  543 (639)
T ss_pred             CCChhcccce-eeecccccccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCce
Confidence            22 1233332 34556799999999876543      22 22448899999999975    346776666665

>PRK04173 glycyl-tRNA synthetase; Provisional

Probab=99.75  E-value=2.2e-18  Score=203.83  Aligned_cols=184  Identities=24%  Similarity=0.324  Sum_probs=154.8

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCC-CCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~-~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      .+..+||+|+..+.|...|.+++.||+ +||++++|++++||+|+.+    ..||+|+|||++.|+..|+.|++  +.+.
T Consensus       156 ~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~----~~gL~RvReF~q~e~hiF~~peq--~~~e  229 (456)
T PRK04173        156 SKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP----RNFIFRTREFEQMELEFFVKPGT--DNEW  229 (456)
T ss_pred             CCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC----CCCceeeceeeeeEEEEEECcCh--HHHH
Confidence            356889999888888888999999999 9999999999999999943    46999999999999999999975  8999


Q ss_pred             HHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhh------cccceec
Q psy11602         96 LDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR------RLLVRYG  166 (1083)
Q Consensus        96 ~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~------rl~i~y~  166 (1083)
                      +..+++.+..+|+.||++   +++...+..++...+...+|+|+++|....|.+++++..-+||.-.      +++++|.
T Consensus       230 ~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~  309 (456)
T PRK04173        230 FAYWIELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYF  309 (456)
T ss_pred             HHHHHHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEE
Confidence            999999999999999998   7777777778888888899999999977779998888888888755      5788887


Q ss_pred             --cCCCc-----cccccccchhheeheeccccCC---------CeeEecccccccc
Q psy11602        167 --QTKQK-----IYATACATTRVICAILETHQTE---------TGVRIPDCLRKFV  206 (1083)
Q Consensus       167 --~~~~~-----~n~tg~a~~Rli~Alle~~~~~---------~Gi~lP~~L~p~~  206 (1083)
                        ..++.     |-..+++++|++.|||+.+.++         .|++||..|+|+.
T Consensus       310 ~~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~q  365 (456)
T PRK04173        310 DDETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVK  365 (456)
T ss_pred             ecCCCCceeeeEEEEecccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCE
Confidence              22222     4455578999888887765444         2479999999998

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=99.69  E-value=1.1e-17  Score=161.27  Aligned_cols=81  Identities=28%  Similarity=0.604  Sum_probs=74.4

Q ss_pred             CCCcceeccCCceeecccccccCCcEEecccccCceeeecCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceece
Q psy11602        803 RGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVY  882 (1083)
Q Consensus       803 ~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~  882 (1083)
                      .+||||+|.+++|||++||+|+|++.|.+...|+||++..|+.+|+. ..|.||+++    .|+||+|...+|.++||+.
T Consensus         9 ~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~-~~C~iC~~~----~G~~i~C~~~~C~~~fH~~   83 (110)
T PF13832_consen    9 RGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFK-LKCSICGKS----GGACIKCSHPGCSTAFHPT   83 (110)
T ss_pred             CCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcC-CcCcCCCCC----CceeEEcCCCCCCcCCCHH
Confidence            78999999999999999999999999999999999997789999987 489999985    9999999999999999997


Q ss_pred             eeccCC
Q psy11602        883 MEVVFP  888 (1083)
Q Consensus       883 ~~~~~~  888 (1083)
                      ++...+
T Consensus        84 CA~~~g   89 (110)
T PF13832_consen   84 CARKAG   89 (110)
T ss_pred             HHHHCC
Confidence            664443

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.68  E-value=1e-16  Score=195.22  Aligned_cols=183  Identities=15%  Similarity=0.184  Sum_probs=141.9

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      .+|+.++.++|+||+|.+++.++.++++++++||+|+|+++++||+|.++   .++||+|+|||+++|++.|+.+  +++
T Consensus       249 ~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g---~~~Gl~R~reF~q~~~~~~~~~--~~~  323 (563)
T TIGR00418       249 FTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSG---ELHGLMRVRGFTQDDAHIFCTE--DQI  323 (563)
T ss_pred             eccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCc---CCcCcccccceEEeeeEEEcCH--HHH
Confidence            46888899999999999999999999999999999999999999999742   4899999999999999999984  679


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCC--------------------------------cccce--eEeEEEEe
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALN--------------------------------HAAAK--KLDLEAWF  138 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg--------------------------------~~as~--~~diE~~~  138 (1083)
                      ++.|.+++..+.++|+.|||+++.+.+.+++.-                                .++.+  ++|+|+ .
T Consensus       324 ~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~-~  402 (563)
T TIGR00418       324 KEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAF-K  402 (563)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEe-e
Confidence            999999999999999999999998988877431                                01111  245552 2


Q ss_pred             cCCCceeEEEEcCCCchhhhhcccceeccCCCc-----c--ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        139 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----I--YATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       139 P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      ...++..|++++. .+-..+.|+++.|.+..|.     |  -|.+++++|+|++|++.+.    ..+|..++|..
T Consensus       403 ~~lg~~~~~~t~q-~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~----~~~p~~~~p~~  472 (563)
T TIGR00418       403 DALGREWQCATVQ-LDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYA----GNFPLWLAPVQ  472 (563)
T ss_pred             cCCCCceeeceee-eccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhcc----CCCCCcCCCce
Confidence            2235666776654 3335588999998766443     3  2445578999999988643    33564455543

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes

Probab=99.68  E-value=6.6e-17  Score=167.75  Aligned_cols=155  Identities=26%  Similarity=0.454  Sum_probs=120.2

Q ss_pred             cccccccccccC-CCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCC
Q psy11602        201 CLRKFVPAVYLN-EAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSP  279 (1083)
Q Consensus       201 ~L~p~~~~~~~~-~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~  279 (1083)
                      +|..++...+ . ..||.+|..|+++..+...+                .++.+.+.+   .+|++..-++ +++.+..-
T Consensus         4 ~l~~~~~~~~-~~~~G~~ev~~P~l~~~~~~~~----------------sg~~~~~~~---~~~~~~~~~~-~~~~L~pt   62 (173)
T PF00587_consen    4 ALERFIREEF-VLKFGFQEVDTPILIPSEVWEK----------------SGHWDNFSD---EMFKVKDRGD-EEYCLRPT   62 (173)
T ss_dssp             HHHHHHHHHH-HHHTTEEEEB--SEEEHHHHHH----------------HSHHHHHGG---GSEEEEETTT-EEEEE-SS
T ss_pred             HHHHHHHHHh-HHhcCCEEEECCeEEehHHhhh----------------ccccccccC---Ceeeeeeccc-ccEEeccc
Confidence            4555555544 3 68999999999999555543                344444444   4677655333 33333221


Q ss_pred             C----------CCcc-hhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH
Q psy11602        280 H----------DDES-WKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD  346 (1083)
Q Consensus       280 ~----------~~~s-~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~  346 (1083)
                      .          .-.+ +++|| ++++.+.|||.. +.++||+|+|||+++|++.++.|  +++.+.++++++.+.+||+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~--~~~~~~~~~~~~~~~~i~~~  140 (173)
T PF00587_consen   63 SEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP--EQSEEEFEELLELYKEILEK  140 (173)
T ss_dssp             SHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC--cccHHHHHHHHHHHHHHHHH
Confidence            0          1124 78899 889999999998 99999999999999999999999  79999999999999999999


Q ss_pred             hCC-cEEEEeccCCCcchhhhceeeEEEeeCCC
Q psy11602        347 LGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGS  378 (1083)
Q Consensus       347 L~l-pyRvv~~~~~dl~~~a~~~~DiE~w~P~~  378 (1083)
                      ||| |||++..+++||+..+.+++|+|+|+|+|
T Consensus       141 lgl~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~  173 (173)
T PF00587_consen  141 LGLEPYRIVLSSSGELGAYAKYEFDIEAWFPAQ  173 (173)
T ss_dssp             TTSGCEEEEEEETCTSCTTSSEEEEEEEEETCC
T ss_pred             cCCceEEEEEcCCCccCCCHHHcccHHHhCcCC
Confidence            999 99999999999999999999999999986

seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....

>PLN02837 threonine-tRNA ligase

Probab=99.68  E-value=1e-16  Score=196.31  Aligned_cols=226  Identities=12%  Similarity=0.144  Sum_probs=172.7

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE----  269 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd----  269 (1083)
                      .|++|..+|..|+.+.+. ..||.+|.+|.+++                .++....++.+.+++   +||++..-+    
T Consensus       245 ~G~~l~~~L~~~~~~~~~-~~G~~~v~tP~l~~----------------~~l~~~sGh~~~~~~---~mf~~~~~~~~~y  304 (614)
T PLN02837        245 KGAIVRHIIEDSWKKMHF-EHGYDLLYTPHVAK----------------ADLWKTSGHLDFYKE---NMYDQMDIEDELY  304 (614)
T ss_pred             hHHHHHHHHHHHHHHHHH-HCCCEEEECCccCC----------------HHHHhhcCCcccchh---hcccccCCCCceE
Confidence            345556889999987774 68999999999999                444555567777777   577764321    


Q ss_pred             --ceEEEEe-e--CCCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602        270 --KVEQFVL-T--SPHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE  341 (1083)
Q Consensus       270 --~~~~~~~-~--~~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e  341 (1083)
                        +....++ +  ..+.-.||++|| ++++.+.|||..+.  ++||+|||||+++|++.+|+|  +++.+++++|++.++
T Consensus       305 ~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~--~q~~~e~~~~l~~~~  382 (614)
T PLN02837        305 QLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLE--DQIKDEIRGVLDLTE  382 (614)
T ss_pred             EECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCH--HHHHHHHHHHHHHHH
Confidence              1111111 1  111235899999 99999999999663  899999999999999999999  689999999999999


Q ss_pred             HHHHHhCCcEEEEeccCCC-------------------------------cchhhhceeeEEEeeCCC-CcEEeeecccC
Q psy11602        342 EFYADLGIAYRVVNIVSGA-------------------------------LNHAAAKKLDLEAWFPGS-GAFRELVSCSN  389 (1083)
Q Consensus       342 ~~~~~L~lpyRvv~~~~~d-------------------------------l~~~a~~~~DiE~w~P~~-~~y~Ev~S~sn  389 (1083)
                      ++|+.|||||+++.++++.                               .|.+|....+||+-++.. |+-.+++++. 
T Consensus       383 ~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiq-  461 (614)
T PLN02837        383 EILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-  461 (614)
T ss_pred             HHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeeccee-
Confidence            9999999999999999862                               234777888888888874 8888888887 


Q ss_pred             cccccccccceEEecccCCCCcee---eEEeecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        390 CLAYQSRRLLVRYGQTKKMNEKIE---FVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       390 ~~d~qarrl~iry~~~~~~~~~~~---~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      .+-..+.|+++.|.+..   ++..   .+|.- ..| .+.|+|++|+|+|...    +|..|.|+
T Consensus       462 ldf~~~~~f~l~y~~~d---~~~~~pv~ih~~-~~G-~~eRlia~Lie~~~g~----~P~~laP~  517 (614)
T PLN02837        462 VDFNLPERFDITYVDSN---SEKKRPIMIHRA-ILG-SLERFFGVLIEHYAGD----FPLWLAPV  517 (614)
T ss_pred             EeecchhhcCcEEECCC---CCccCCEEEEcC-Ccc-CHHHHHHHHHHHcCCC----CCCCCCCc
Confidence            44456899999998763   3344   44532 333 6899999999998754    78777765

>PRK12325 prolyl-tRNA synthetase; Provisional

Probab=99.63  E-value=7.9e-16  Score=181.86  Aligned_cols=230  Identities=14%  Similarity=0.200  Sum_probs=174.7

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQF  274 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~  274 (1083)
                      |.++-.+|..++...+. ..||.+|..|.+...+..                ...++...+++   .+|++..-+. +++
T Consensus        46 g~~i~~~i~~~i~~~~~-~~G~~ev~~P~l~~~~l~----------------~~sg~~~~~~~---emf~~~d~~~-~~~  104 (439)
T PRK12325         46 GLKVLKKIENIVREEQN-RAGAIEILMPTIQPADLW----------------RESGRYDAYGK---EMLRIKDRHD-REM  104 (439)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHH----------------hhcCCccccch---hheEEecCCC-CEE
Confidence            34444677778777774 789999999999995444                22234444555   5777654222 123


Q ss_pred             EeeCC-----------CCCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602        275 VLTSP-----------HDDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE  341 (1083)
Q Consensus       275 ~~~~~-----------~~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e  341 (1083)
                      .+. |           ..-.||++|| ++++...+||+. +...||+|+|||.+-+...++.+. +++.+.+++|++.+.
T Consensus       105 ~L~-Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~-~~a~~~~~~~~~~~~  182 (439)
T PRK12325        105 LYG-PTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDE-EGARHSYNRMFVAYL  182 (439)
T ss_pred             EEc-CCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCH-HHHHHHHHHHHHHHH
Confidence            322 2           1234799999 999999999997 666799999999999999998765 789999999999999


Q ss_pred             HHHHHhCCcEEEEeccCCCcchhhhcee---------------------------------------------eEEEeeC
Q psy11602        342 EFYADLGIAYRVVNIVSGALNHAAAKKL---------------------------------------------DLEAWFP  376 (1083)
Q Consensus       342 ~~~~~L~lpyRvv~~~~~dl~~~a~~~~---------------------------------------------DiE~w~P  376 (1083)
                      ++|+.|||||+.|.+.++.+|-..+..|                                             ..+.-+|
T Consensus       183 ~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  262 (439)
T PRK12325        183 RTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDEWTSLYAATEEMH  262 (439)
T ss_pred             HHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhhhcccccchhhhh
Confidence            9999999999999998887664332221                                             1111223


Q ss_pred             CCC-------------cEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCcee
Q psy11602        377 GSG-------------AFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVR  443 (1083)
Q Consensus       377 ~~~-------------~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~  443 (1083)
                      +.+             +-.||+.+.++++..|++++++|.+.   +++...+|+ ++.|+.++|+|++|+|+|.++.|++
T Consensus       263 ~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~---~g~~~~i~~-~~~GiGieRli~~l~e~~~d~~g~~  338 (439)
T PRK12325        263 DEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGP---DGKEVPVHM-GSYGIGVSRLVAAIIEASHDDKGII  338 (439)
T ss_pred             ccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECC---CCCEEeEEE-eeeECCHHHHHHHHHHHhCccCCCc
Confidence            222             23489999999999999999999976   456778886 5999999999999999999999999


Q ss_pred             cCcccccc
Q psy11602        444 IPDCLRKF  451 (1083)
Q Consensus       444 iP~~L~py  451 (1083)
                      +|..++|+
T Consensus       339 ~P~~iaP~  346 (439)
T PRK12325        339 WPESVAPF  346 (439)
T ss_pred             CCCCcCCe
Confidence            99999998

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=99.62  E-value=5.9e-16  Score=185.97  Aligned_cols=180  Identities=17%  Similarity=0.243  Sum_probs=134.1

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      |..+++++|+||+|.+++.+|+++..||++||+|+|++++|||+|..   ..++||+|+|||++.|+..|+.++.  +.+
T Consensus       218 ~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~s---g~l~GL~RvReF~Q~DaHif~~~~q--~~~  292 (545)
T PRK14799        218 NMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKK---GELYGLLRVRGFVQDDGHIFLREDQ--LRE  292 (545)
T ss_pred             eccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCC---CCccccccceeEEEcccEEEeCHHH--HHH
Confidence            45578999999999999999999999999999999999999999995   2678999999999999999988753  555


Q ss_pred             HHHHHHHHHHHHHHHcCCc---eEEEEe--cc--------CCC----------------------CcccceeEeEEEEec
Q psy11602         95 MLDEMIQNSEEFYADLGIA---YRVVNI--VS--------GAL----------------------NHAAAKKLDLEAWFP  139 (1083)
Q Consensus        95 ~~~~~~~~y~~if~~LgLp---yrvv~~--~s--------gdl----------------------g~~as~~~diE~~~P  139 (1083)
                      ...++++...++|+.||++   |++...  |.        |+.                      |+-...++|+++ .+
T Consensus       293 E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v-~d  371 (545)
T PRK14799        293 EIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEI-RD  371 (545)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEe-hh
Confidence            5555556556666666653   333221  10        111                      111113677777 77


Q ss_pred             CCCceeEEEEcCCCchhh-hhcccceeccCCCc------cc-cccccchhheeheeccccCCCeeEecccccccc
Q psy11602        140 GSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKQK------IY-ATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       140 ~~~~~~ev~s~s~cgdyq-s~rl~i~y~~~~~~------~n-~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      +.+++.+++++.  .||+ ++|++++|.+.++.      ++ +...+++|+|++|++++.   | .+|..++|..
T Consensus       372 algr~~q~~Tiq--ldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~~---G-~~P~wlaP~q  440 (545)
T PRK14799        372 SLGRWWQLSTIQ--VDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFK---G-KLPTWLSSVQ  440 (545)
T ss_pred             hcCchhhhhhhh--hhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHcC---C-CCCCCCCCce
Confidence            788899999887  6677 99999999876552      34 455588999999888752   3 3776677664

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.55  E-value=1.5e-15  Score=185.62  Aligned_cols=183  Identities=16%  Similarity=0.219  Sum_probs=134.5

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+||++.+++.+++++..++++||+|+++++++||+|...   +++||+|+|||++.+++.|+.++  .+
T Consensus       255 ~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~if~~~~--~~  329 (575)
T PRK12305        255 PMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG---VLHGLTRVRGFTQDDAHIFCTPD--QI  329 (575)
T ss_pred             ccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC---CCcCcccccCeEEcceEEEeCHH--HH
Confidence            34778899999999999999999999999999999999999999999942   57899999999999999999765  47


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCC----CCcccce----------------------------eEeEEEEec-
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGA----LNHAAAK----------------------------KLDLEAWFP-  139 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgd----lg~~as~----------------------------~~diE~~~P-  139 (1083)
                      .+.+.+++..+.++|+.|||+...+.+.+++    +|.....                            .-.+|+.+. 
T Consensus       330 ~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d  409 (575)
T PRK12305        330 EDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKD  409 (575)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeec
Confidence            8888999999999999999997778888876    2322110                            000111111 


Q ss_pred             CCCceeEEEEcCCCchh-hhhcccceeccCCCc-----c--ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        140 GSGAFRELVSCSNCLDY-QSRRLLVRYGQTKQK-----I--YATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       140 ~~~~~~ev~s~s~cgdy-qs~rl~i~y~~~~~~-----~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      +.++..++++..  .|| .+.+++++|.+.++.     |  .+.+.+++|+|++|+|.+.+    .||..++|+.
T Consensus       410 ~~g~~~~~~t~~--~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~----~~p~~~~p~~  478 (575)
T PRK12305        410 ALGREWQMSTIQ--LDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAG----AFPFWLAPVQ  478 (575)
T ss_pred             cCCCceecccee--eecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHhCC----CCCCCCCCcc
Confidence            112222222221  222 357899999766543     2  23334789999999997543    6777677764

>PLN02908 threonyl-tRNA synthetase

Probab=99.53  E-value=8.9e-15  Score=181.50  Aligned_cols=181  Identities=18%  Similarity=0.242  Sum_probs=129.1

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      ..+++++|+||+|.+++.+|++++.||++||+|+|++++|||+|++++   ++||+|+|||+|.|++.|+.++  ++++.
T Consensus       372 ~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~---l~Gl~RvReF~q~d~~if~~~~--q~~~e  446 (686)
T PLN02908        372 IEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCRED--QIKDE  446 (686)
T ss_pred             cCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcC---CcCccccccEEEeeEEEEcCHH--HHHHH
Confidence            456889999999999999999999999999999999999999999653   8899999999999999999985  49999


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeE--------------eEEEEe--cCCCc------ee----EEEE
Q psy11602         96 LDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKL--------------DLEAWF--PGSGA------FR----ELVS  149 (1083)
Q Consensus        96 ~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~--------------diE~~~--P~~~~------~~----ev~s  149 (1083)
                      ++++++.+..+|+.||++|++....-.+...+....+              +.. |-  |+++.      ..    .+..
T Consensus       447 ~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~-~~~~~g~~afygpkid~~~~d~l~r  525 (686)
T PLN02908        447 VKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKP-WQLNEGDGAFYGPKIDITVSDALKR  525 (686)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCC-cEECCCceeecccceEEEEEeccCC
Confidence            9999999999999999999985443222111111111              111 11  22221      11    1112


Q ss_pred             cCCC----chhh-hhcccceeccCCCc-------c-ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        150 CSNC----LDYQ-SRRLLVRYGQTKQK-------I-YATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       150 ~s~c----gdyq-s~rl~i~y~~~~~~-------~-n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      ...|    .||+ ..+|++.|-+.++.       + .+...++.|++++|++++.    -.+|..+.|..
T Consensus       526 ~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~~----g~~p~wlsp~q  591 (686)
T PLN02908        526 KFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYA----GKWPFWLSPRQ  591 (686)
T ss_pred             EeeccceeecccCHhhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHcC----CCCCCCCCCce
Confidence            2333    3343 36789998765321       4 3344478999999999743    25665566553

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=99.51  E-value=1.3e-14  Score=176.60  Aligned_cols=171  Identities=19%  Similarity=0.265  Sum_probs=135.8

Q ss_pred             ecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEee
Q psy11602        198 IPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLT  277 (1083)
Q Consensus       198 lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~  277 (1083)
                      +-.+|..++.+.+. ..||.++..|+++..+.-                ...++...+++   .+|++..... +++.+.
T Consensus        49 ~~~~i~~~i~~~~~-~~G~~ei~~P~l~~~~l~----------------~~sg~~~~~~~---emf~~~d~~~-~~l~Lr  107 (565)
T PRK09194         49 VLRKIENIVREEMN-KIGAQEVLMPALQPAELW----------------QESGRWEEYGP---ELLRLKDRHG-RDFVLG  107 (565)
T ss_pred             HHHHHHHHHHHHHH-HcCCEEEECcccCcHHHH----------------hhcCCccccch---hceEEecCCC-CEEEEC
Confidence            33666777766664 789999999999995444                22234444444   4677643221 122222


Q ss_pred             CC-----------CCCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHH
Q psy11602        278 SP-----------HDDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFY  344 (1083)
Q Consensus       278 ~~-----------~~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~  344 (1083)
                       |           +.-.||++|| ++++...+||+. +..+||+|+|||.+++.+.|+.++ +++++.+++|++.+.++|
T Consensus       108 -Pt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~-~~a~~~~~~~~~~~~~i~  185 (565)
T PRK09194        108 -PTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADE-ESLDETYDAMYQAYSRIF  185 (565)
T ss_pred             -CCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCCh-HHHHHHHHHHHHHHHHHH
Confidence             2           1123688999 999999999998 888999999999999999999875 577889999999999999


Q ss_pred             HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc
Q psy11602        345 ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR  396 (1083)
Q Consensus       345 ~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar  396 (1083)
                      +.|||||+++..++|+||..++++|    |+|++..|.||+||+||+ |.|.
T Consensus       186 ~~lgl~~~~~~~~~g~~gg~~s~e~----~~~~~~g~~~~~~c~~c~-~~~n  232 (565)
T PRK09194        186 DRLGLDFRAVEADSGAIGGSASHEF----MVLADSGEDTIVYSDESD-YAAN  232 (565)
T ss_pred             HHhCCccEEEEcccccCCCceeEEE----EEecCCCceEEEEeCCCC-cchh
Confidence            9999999999999999999999999    999999999999999996 5544

>PRK04173 glycyl-tRNA synthetase; Provisional

Probab=99.49  E-value=3.3e-14  Score=168.55  Aligned_cols=167  Identities=22%  Similarity=0.272  Sum_probs=140.0

Q ss_pred             Ccchh-hhh-hhhccccccccccc-CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc---EEEEe
Q psy11602        282 DESWK-MLD-EMIQNSEEFYADLD-TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA---YRVVN  355 (1083)
Q Consensus       282 ~~s~~-~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp---yRvv~  355 (1083)
                      -.||+ +|| ++.+...|||.... ..||+|||+|++.|.-.||+|  +++.+++..++....++|+.||++   ||+..
T Consensus       178 ~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~p--eq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~  255 (456)
T PRK04173        178 LRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKP--GTDNEWFAYWIELRKNWLLDLGIDPENLRFRE  255 (456)
T ss_pred             HHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECc--ChHHHHHHHHHHHHHHHHHHcCCCccceEEEe
Confidence            35899 999 88889999998433 479999999999999999999  578999999999999999999999   88888


Q ss_pred             ccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc------ccceEEecccCCCCceeeEEeecccccchhHHH
Q psy11602        356 IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR------RLLVRYGQTKKMNEKIEFVHMLNATACATTRVI  429 (1083)
Q Consensus       356 ~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar------rl~iry~~~~~~~~~~~~~htln~t~~a~~R~i  429 (1083)
                      .+..++...+...+|+|+++|....|.|++++.+-+||+-.      |.++.|.+.. .+++...+|++ +.++.++|++
T Consensus       256 ~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~-~~~~~~~P~vi-~~siGieRl~  333 (456)
T PRK04173        256 HLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDE-TTGEKYIPYVI-EPSAGLDRLL  333 (456)
T ss_pred             cCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecC-CCCceeeeEEE-EecccHHHHH
Confidence            88889999999999999999976679999999999999866      4788887321 14456789999 5557999999


Q ss_pred             HHHHhhccCCC---------ceecCccccccC
Q psy11602        430 CAILETHQTET---------GVRIPDCLRKFV  452 (1083)
Q Consensus       430 ~ailEn~q~~~---------Gi~iP~~L~py~  452 (1083)
                      +|||+.+-.++         |+++|..|+|+-
T Consensus       334 ~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~q  365 (456)
T PRK04173        334 LAFLEDAYTEEELGGGDKRTVLRLPPALAPVK  365 (456)
T ss_pred             HHHHHHHcccccccCCcceeEEECCCcCCCCE
Confidence            99877664331         378999999874

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=99.47  E-value=4.5e-14  Score=171.22  Aligned_cols=197  Identities=19%  Similarity=0.262  Sum_probs=145.2

Q ss_pred             eEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEE
Q psy11602        196 VRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFV  275 (1083)
Q Consensus       196 i~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~  275 (1083)
                      .++-.+|..++.+.+. ..||.++..|++...+..++.                ++...++.   +||++..-.. +++.
T Consensus        47 ~rv~~~I~~~i~~~~~-~~G~~ei~~P~l~~~el~~~s----------------g~~~~~~~---emf~~~dr~~-~~l~  105 (568)
T TIGR00409        47 LRVLKKVENIVREEMN-KDGAIEVLLPALQPAELWQES----------------GRWDTYGP---ELLRLKDRKG-REFV  105 (568)
T ss_pred             HHHHHHHHHHHHHHHH-HcCCEEEECCccchHHHHhhc----------------CCCCccch---hcEEEecCCC-CEEE
Confidence            3334666777666664 789999999999995555332                23333344   5677653221 1222


Q ss_pred             eeCCC-----------CCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHH
Q psy11602        276 LTSPH-----------DDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEE  342 (1083)
Q Consensus       276 ~~~~~-----------~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~  342 (1083)
                      + .|.           .-.||++|| ++++...+||+. +..+||+|+|||.+++++.|+.++ +++.+.++.|++.+.+
T Consensus       106 L-rPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~-~~a~~e~~~~~~~y~~  183 (568)
T TIGR00409       106 L-GPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDE-ESLDATYQKMYQAYSN  183 (568)
T ss_pred             E-cCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCCh-HHHHHHHHHHHHHHHH
Confidence            2 231           123678899 999999999998 888999999999999999999985 6778899999999999


Q ss_pred             HHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEeccc----CCCCceeeEEee
Q psy11602        343 FYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTK----KMNEKIEFVHML  418 (1083)
Q Consensus       343 ~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~----~~~~~~~~~htl  418 (1083)
                      ||+.|||||++|..++|+||.++++.||+|++    ..+.||+||| |.||||. +..-.....    ......+-+||.
T Consensus       184 if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~----~ge~~i~~c~-~~~y~an-~e~a~~~~~~~~~~~~~~~~~~~tp  257 (568)
T TIGR00409       184 IFSRLGLDFRPVQADSGAIGGSASHEFMVLAE----SGEDTIVYSD-ESDYAAN-IELAEALAPGERNAPTAELDKVDTP  257 (568)
T ss_pred             HHHHhCCcceEEEeccccCCCccceEEeEecC----CCceEEEEec-Ccccchh-hhhhcccCccccccccccceeecCC
Confidence            99999999999999999999999999999974    4569999999 8899995 333221100    001124667888


Q ss_pred             ccc
Q psy11602        419 NAT  421 (1083)
Q Consensus       419 n~t  421 (1083)
                      |.+
T Consensus       258 ~~~  260 (568)
T TIGR00409       258 NTK  260 (568)
T ss_pred             CCC
Confidence            654

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain

Probab=99.35  E-value=2.2e-13  Score=150.30  Aligned_cols=135  Identities=22%  Similarity=0.284  Sum_probs=110.6

Q ss_pred             CCCCCCeeEec-CChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         15 KDELDDKYLIA-TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        15 dr~~~~~~L~p-TsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      |+.+++++|+| |++..++.+.+....+.++||+++|||+++||+|+    +++.||+|+|||++.|++.|+.++.  +.
T Consensus        75 d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~----~~~~gl~R~ReF~q~d~~~f~~~~~--~~  148 (254)
T cd00774          75 ESGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEI----SPRNGLFRVREFTQAEIEFFVDPEK--SH  148 (254)
T ss_pred             CCCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhcccc----CcccceeeeccchhhheeeeECCCC--ch
Confidence            33456899999 56656666655444445699999999999999999    3447999999999999999998874  89


Q ss_pred             HHHHHHHHHHHHHHHHcCC---ceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhh
Q psy11602         94 KMLDEMIQNSEEFYADLGI---AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgL---pyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyq  157 (1083)
                      +.|+.+++++.+||+++|+   .+|....++.+++.-+...+|+++..|  .+|.|+.-+++-++++
T Consensus       149 e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~--~~w~e~~Gi~~~~~~~  213 (254)
T cd00774         149 PWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRF  213 (254)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHh--hhHHHHcCCCcchhHH
Confidence            9999999999999999994   468888888899988888889887775  4677877777777664

GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=99.34  E-value=1.7e-12  Score=156.43  Aligned_cols=221  Identities=14%  Similarity=0.209  Sum_probs=144.3

Q ss_pred             ecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceEEEEe
Q psy11602        198 IPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVEQFVL  276 (1083)
Q Consensus       198 lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~~~~~  276 (1083)
                      |-..|..|+-+.+. ..||.||..|.+.+.+..+.                .++.+.+.+   .||.+...+ ....-+-
T Consensus       170 i~~~L~~~~r~~~~-~~Gy~eV~TP~i~~~eL~k~----------------SGh~~~y~~---~mf~~~~~~e~~~LrPm  229 (545)
T PRK14799        170 IRNELIAFMREIND-SMGYQEVYTSHVFKTDIWKI----------------SGHYTLYRD---KLIVFNMEGDEYGVKPM  229 (545)
T ss_pred             HHHHHHHHHHHHHH-HcCCeEEECCccchHHHHhh----------------ccccccchh---hcceeeccCceEEeccC
Confidence            33667777766664 78999999999888555533                233333333   344332111 1111111


Q ss_pred             eC-------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeee-------------------------------
Q psy11602        277 TS-------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEK-------------------------------  315 (1083)
Q Consensus       277 ~~-------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~k-------------------------------  315 (1083)
                      .-       .+...||++|| ++++...|||+.+.  ++||+|+|+|++                               
T Consensus       230 ~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG  309 (545)
T PRK14799        230 NCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFG  309 (545)
T ss_pred             CCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            11       11245899999 99999999999544  789999999999                               


Q ss_pred             -----EEEEEEeCCCch-hHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccC
Q psy11602        316 -----VEQFVLTSPHDD-ESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSN  389 (1083)
Q Consensus       316 -----vE~f~~~~~~~~-~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn  389 (1083)
                           +++...+.|++. .+.+..+++.+..+++|+++||||++........    ..++|+++ .++.+++.++++++ 
T Consensus       310 ~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafy----gpkiD~~v-~dalgr~~q~~Tiq-  383 (545)
T PRK14799        310 FKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFY----GPKIDFEI-RDSLGRWWQLSTIQ-  383 (545)
T ss_pred             CCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccc----cCccceEe-hhhcCchhhhhhhh-
Confidence                 444444555210 1234556666667777777777777765432222    24889999 89999999999998 


Q ss_pred             ccccc-ccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        390 CLAYQ-SRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       390 ~~d~q-arrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                       .||| ++|+++.|.+..+.....-.+|+  |..-.+.|+|++|+|+|+   | .+|..+.|.
T Consensus       384 -ldf~lp~rf~Ley~~~~~~~~~pv~ihr--~~~GgiERli~iL~e~~~---G-~~P~wlaP~  439 (545)
T PRK14799        384 -VDFNLPERFKLEYIDKDGIKKRPVMVHR--AIYGSIDRFVAILLEHFK---G-KLPTWLSSV  439 (545)
T ss_pred             -hhcCcccccceEEEcCCCCCcccEEEEc--cCCCCHHHHHHHHHHHcC---C-CCCCCCCCc
Confidence             9999 99999999875321112346775  333368999998889763   4 377656654

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.34  E-value=5.6e-12  Score=156.20  Aligned_cols=181  Identities=17%  Similarity=0.241  Sum_probs=129.5

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .|+.++.++|+|+.+.+++-++.++..+|++||+|+|+++++||+|...   ..+||.|+|||++.+++.|+.++  .+.
T Consensus       320 ~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~~~g~~~--~~~  394 (638)
T PRK00413        320 TESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG---ALHGLMRVRGFTQDDAHIFCTPE--QIE  394 (638)
T ss_pred             ecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC---CCcCcceeeeeEEeeEEEEcCHH--HHH
Confidence            5888899999999999999999999999999999999999999999952   36799999999999999998765  366


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEecc---CCCCcccc------------------------------eeEeEEEEecC
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIVS---GALNHAAA------------------------------KKLDLEAWFPG  140 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~s---gdlg~~as------------------------------~~~diE~~~P~  140 (1083)
                      +.+.+++..+.++|+.|||+-..+.+.+   +.+|....                              .++|+.+ ..+
T Consensus       395 ~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  473 (638)
T PRK00413        395 EEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQL-KDA  473 (638)
T ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEe-ecC
Confidence            7789999999999999999533334443   33443321                              0111111 111


Q ss_pred             CCceeEEEEcCCCchh-hhhcccceeccCCCc-----c--ccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        141 SGAFRELVSCSNCLDY-QSRRLLVRYGQTKQK-----I--YATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       141 ~~~~~ev~s~s~cgdy-qs~rl~i~y~~~~~~-----~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      .++..++++..  .|| ..++|++.|.+..+.     +  .+.+.+++|+|++|++.+.+    .||..++|..
T Consensus       474 ~~~~~~l~~~~--~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~~----~~p~~~~p~~  541 (638)
T PRK00413        474 LGREWQCGTIQ--LDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYAG----AFPTWLAPVQ  541 (638)
T ss_pred             CCCeEEeccEe--ecccChhhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcCC----CCCcccCcce
Confidence            22323332221  223 257888888765442     3  34455789999999997643    4776677664

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.26  E-value=4.8e-12  Score=156.61  Aligned_cols=221  Identities=11%  Similarity=0.161  Sum_probs=143.6

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc------ceEE
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE------KVEQ  273 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd------~~~~  273 (1083)
                      ..|..++...+. ..||.+|..|+++..+...+.+                +.+.+.+   ++|-+...+      ++..
T Consensus       278 ~~i~~~~~~~~~-~~G~~~v~tP~l~~~~l~~~sG----------------~~~~~~~---emy~~d~~~~~~~LrP~~~  337 (639)
T PRK12444        278 NELEAFLREIQK-EYNYQEVRTPFMMNQELWERSG----------------HWDHYKD---NMYFSEVDNKSFALKPMNC  337 (639)
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhcC----------------Chhhhhh---hcCeecCCCcEEEEccCCC
Confidence            445666666663 7899999999999966654432                3333333   333110000      1111


Q ss_pred             EEeeC--CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhC
Q psy11602        274 FVLTS--PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLG  348 (1083)
Q Consensus       274 ~~~~~--~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~  348 (1083)
                      ..++.  .+.-.||++|| ++++...|||+.+.  ++||+|+|||+++|...++.+  +++++.+++++..++++|+.||
T Consensus       338 ~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~--~~~~~e~~~~~~~~~~i~~~lg  415 (639)
T PRK12444        338 PGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTP--DQIEDEIKSVMAQIDYVYKTFG  415 (639)
T ss_pred             HHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCH--HHHHHHHHHHHHHHHHHHHHcC
Confidence            11111  11234789999 99999999999774  889999999999999999999  5799999999999999999999


Q ss_pred             CcEEEEeccCC---Ccch----------------------------hhhceeeEEEeeCCCCcEEeeecccCcccc-ccc
Q psy11602        349 IAYRVVNIVSG---ALNH----------------------------AAAKKLDLEAWFPGSGAFRELVSCSNCLAY-QSR  396 (1083)
Q Consensus       349 lpyRvv~~~~~---dl~~----------------------------~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~-qar  396 (1083)
                      |||++. +.+.   -+|.                            +|+...-||+-+...+.-.-+.+- ...|| -+.
T Consensus       416 l~~~~~-~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t-~~~d~~~~~  493 (639)
T PRK12444        416 FEYEVE-LSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGT-IQLDFQMPE  493 (639)
T ss_pred             CcEEEE-EECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcccc-eeeeccccc
Confidence            999963 3221   1222                            445555666665542221111122 23555 678


Q ss_pred             ccceEEecccCCCCceeeEEeeccc-ccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        397 RLLVRYGQTKKMNEKIEFVHMLNAT-ACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       397 rl~iry~~~~~~~~~~~~~htln~t-~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      |++++|.+.   +++...++++.-+ +..+.|+|.+|+|++    |..+|..++|.
T Consensus       494 ~f~l~~~~~---~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~  542 (639)
T PRK12444        494 KFDLNYIDE---KNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPV  542 (639)
T ss_pred             ccceEEECC---CCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCc
Confidence            999999865   3444555444333 447899999999976    44677655554

>KOG1080|consensus

Probab=99.22  E-value=1.3e-11  Score=154.57  Aligned_cols=116  Identities=32%  Similarity=0.715  Sum_probs=101.9

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCCCCceeecCCCCccccc
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIAEPTCELCPNFGENHLR  769 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~~~~C~LCp~~g~~~~~  769 (1083)
                      ....|.+|...+....|.++.|+.|++.+|+.|||.....         ....|+|+.|........|+||+.       
T Consensus       572 ~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~---------~~~~~~~~~~~~~~~~r~~~l~~~-------  635 (1005)
T KOG1080|consen  572 TTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSY---------DGTSWVCDSCETLDIKRSCCLCPV-------  635 (1005)
T ss_pred             CcccccccccccccccceeeeeccccccCCCcccccCCCC---------CCCcchhhccccccCCchhhhccc-------
Confidence            3458999999888899999999999999999999997654         457899999998655678999999       


Q ss_pred             cccccccccchhhhhhhhccccccccCCCCCCCCCCcceeccCCceeecccccccCCcEEecccccCceeee-cCccCCc
Q psy11602        770 GLFENIKNGHAQRDRMRYHACHLRDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLF-EMPYSRW  848 (1083)
Q Consensus       770 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pev~f~~~~~~~pv~~~-~ip~~r~  848 (1083)
                                                       ++||+++++.++|+|+.||.|.|++.+++...|.|.... .+|...+
T Consensus       636 ---------------------------------~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~  682 (1005)
T KOG1080|consen  636 ---------------------------------KGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSF  682 (1005)
T ss_pred             ---------------------------------cCcccCCCCccchhhhhchhccccccCCCccCCCCcccccccCccch
Confidence                                             789999999999999999999999999999999999876 5777777


Q ss_pred             CCCcccc
Q psy11602        849 GAKSCAL  855 (1083)
Q Consensus       849 ~~~~C~i  855 (1083)
                      . ..|.+
T Consensus       683 ~-~~~~~  688 (1005)
T KOG1080|consen  683 L-KICFI  688 (1005)
T ss_pred             h-hhccc
Confidence            5 45666

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.19  E-value=2.2e-11  Score=148.78  Aligned_cols=219  Identities=15%  Similarity=0.219  Sum_probs=147.7

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---------c
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---------K  270 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---------~  270 (1083)
                      .+|..++.+.+. ..||.+|..|+++..+.....                ++.+.+.+   .||++..-+         .
T Consensus       204 ~~i~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~s----------------g~~~~~~~---emy~~~d~~~~~~~LrP~~  263 (563)
T TIGR00418       204 NLLEDFVRQKQI-KYGYMEVETPIMYDLELWEIS----------------GHWDNYKE---RMFPFTELDNREFMLKPMN  263 (563)
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCccCCHHHHHhc----------------CCcccchh---hcceeccCCCceEEEecCC
Confidence            555666655553 789999999999995555332                23333333   344432211         1


Q ss_pred             eEEEEeeCCCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh
Q psy11602        271 VEQFVLTSPHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL  347 (1083)
Q Consensus       271 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L  347 (1083)
                      +..+.....+...||++|| ++++...+||+...  ++||+|+|||+++|+..++.+  +++++.+++++..+.++|+.|
T Consensus       264 ~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~--~~~~~e~~~~i~~~~~~~~~l  341 (563)
T TIGR00418       264 CPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTE--DQIKEEFKNQFRLIQKVYSDF  341 (563)
T ss_pred             CHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCH--HHHHHHHHHHHHHHHHHHHHc
Confidence            1111111112234678899 99999999998543  789999999999999999986  789999999999999999999


Q ss_pred             CCcEEEEeccCCCcc----h-----hh-------------------------hceeeEEEeeCCCCcEEeeecccCcccc
Q psy11602        348 GIAYRVVNIVSGALN----H-----AA-------------------------AKKLDLEAWFPGSGAFRELVSCSNCLAY  393 (1083)
Q Consensus       348 ~lpyRvv~~~~~dl~----~-----~a-------------------------~~~~DiE~w~P~~~~y~Ev~S~sn~~d~  393 (1083)
                      |||++.|.++++|.-    .     .+                         .-++|+|+ ....|+..|++++-  .|+
T Consensus       342 gl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~-~~~lg~~~~~~t~q--~~~  418 (563)
T TIGR00418       342 GFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAF-KDALGREWQCATVQ--LDF  418 (563)
T ss_pred             CCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEe-ecCCCCceeeceee--ecc
Confidence            999999999887541    0     00                         11357774 44457777777664  344


Q ss_pred             c-ccccceEEecccCCCCceeeEEeec-ccccchhHHHHHHHhhccCCCceecCccccc
Q psy11602        394 Q-SRRLLVRYGQTKKMNEKIEFVHMLN-ATACATTRVICAILETHQTETGVRIPDCLRK  450 (1083)
Q Consensus       394 q-arrl~iry~~~~~~~~~~~~~htln-~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~p  450 (1083)
                      . +.|+++.|.+.   .+....++++. |.++.+.|+|++|+|.+.    ..+|..+.|
T Consensus       419 ~~g~ryd~~~~~~---~g~~~~p~ii~~Gfa~gieRli~~l~e~~~----~~~p~~~~p  470 (563)
T TIGR00418       419 ELPERFDLTYVDE---DNEEKRPVMIHRAILGSIERFIAILLEKYA----GNFPLWLAP  470 (563)
T ss_pred             CCHhhcCCEEECC---CCCEEeeEEEEeeccCcHHHHHHHHHHhcc----CCCCCcCCC
Confidence            3 67888888765   34566777641 555678999999999653    345644444

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain

Probab=99.19  E-value=2e-10  Score=121.34  Aligned_cols=158  Identities=23%  Similarity=0.308  Sum_probs=126.9

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .+..++..+|+||.+.++..+++...   +++|+++|+++++||.|...     .++.|++||.+.+.+.+..+..  ..
T Consensus        46 ~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~~~lfeig~vfr~e~~~-----~~~~~~~ef~~l~~~~~g~~~~--~~  115 (211)
T cd00768          46 GAENEEDLYLRPTLEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGGR-----RGLRRVREFTQLEGEVFGEDGE--EA  115 (211)
T ss_pred             ecCCCCEEEECCCCcHHHHHHHHhhc---ccCCEEEEEEcceeecCCCc-----cccccceeEEEcCEEEEcCCch--hH
Confidence            34566788999999999999998877   89999999999999998732     2367889999999999987762  22


Q ss_pred             HHHHHHHHHHHHHHHHcCC--ceEEEEeccCCCC-cccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCC
Q psy11602         94 KMLDEMIQNSEEFYADLGI--AYRVVNIVSGALN-HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ  170 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgL--pyrvv~~~sgdlg-~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~  170 (1083)
                      ..+.+++...+.+++.||+  +++.+......+. +....++||++|+|.. +..||+++..+.+.++++++++|...++
T Consensus       116 ~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~eig~~g~~~~~~~~~~~l~~~~~~~  194 (211)
T cd00768         116 SEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPEG-RGLEIGSGGYRQDEQARAADLYFLDEAL  194 (211)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEEecCchhhccccCCceEEEEEEccCC-CeEEEeeceeecCchhHhhhhheecccc
Confidence            4689999999999999997  5777645555554 3677899999999965 4589999999999999999999976643


Q ss_pred             c-----cccccccchhh
Q psy11602        171 K-----IYATACATTRV  182 (1083)
Q Consensus       171 ~-----~n~tg~a~~Rl  182 (1083)
                      .     +-+.+++++|+
T Consensus       195 ~~~~p~~~~~~~~~~R~  211 (211)
T cd00768         195 EYRYPPTIGFGLGLERL  211 (211)
T ss_pred             cccCceeecCccCccCC
Confidence            2     33334788875

Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.

>KOG2324|consensus

Probab=99.18  E-value=3.8e-11  Score=132.70  Aligned_cols=164  Identities=21%  Similarity=0.304  Sum_probs=131.8

Q ss_pred             chhhhh-hhhcccccccccccCc-CceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCc
Q psy11602        284 SWKMLD-EMIQNSEEFYADLDTR-GIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGAL  361 (1083)
Q Consensus       284 s~~~~~-~~~~~~~~~~~~~~tr-Gl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl  361 (1083)
                      ||+.|| ++|+.-+.||-.-.+| ||.|.+||-+=.|+.|...+ |.|.+.|+.+...+..|+++|+|||--|.-.+|++
T Consensus       130 sykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~-etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~i  208 (457)
T KOG2324|consen  130 SYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDE-ETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDI  208 (457)
T ss_pred             ccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCH-HHHHHHHHHHHHHHHHHHHHcCCCeEEEeeccccc
Confidence            788899 8899988888765554 99999999999999998776 79999999999999999999999999999999999


Q ss_pred             chhhhceeeEE--------EeeCCC-----C----------------------cEEeeecccCcccccccccceEEeccc
Q psy11602        362 NHAAAKKLDLE--------AWFPGS-----G----------------------AFRELVSCSNCLAYQSRRLLVRYGQTK  406 (1083)
Q Consensus       362 ~~~a~~~~DiE--------~w~P~~-----~----------------------~y~Ev~S~sn~~d~qarrl~iry~~~~  406 (1083)
                      |-.-+.-|-+=        ..-|+-     .                      +-.||+-.=..++..|..||.+|-+. 
T Consensus       209 GG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~-  287 (457)
T KOG2324|consen  209 GGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNV-  287 (457)
T ss_pred             CceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCcccccceEEEEEEEeccccccccCceeeee-
Confidence            97666555321        111110     0                      12233333333557788888888765 


Q ss_pred             CCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        407 KMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       407 ~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                        .+|.+++||- ++|+.|+|+|+|++|---+++|++||..|+||-
T Consensus       288 --~gKpe~l~Mg-CyGIGVtRllaAa~evls~~~~lrwP~~iAPy~  330 (457)
T KOG2324|consen  288 --EGKPEFLHMG-CYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYK  330 (457)
T ss_pred             --cCCcceEEec-ceeccHHHHHHHHHHHhccccccccccccCcce
Confidence              4678899976 999999999999999999999999999999995

>PLN02908 threonyl-tRNA synthetase

Probab=99.16  E-value=3.9e-11  Score=149.35  Aligned_cols=225  Identities=19%  Similarity=0.311  Sum_probs=146.5

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQF  274 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~  274 (1083)
                      |++|-.+|..|+.+.+. ..||.+|.+|.++..+..                ...++.+.+.+   .||.+...+  +++
T Consensus       320 g~~i~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~----------------~~sGh~~~~~~---~mf~~~~~~--~~~  377 (686)
T PLN02908        320 GARIYNKLMDFIREQYW-ERGYDEVITPNIYNMDLW----------------ETSGHAAHYKE---NMFVFEIEK--QEF  377 (686)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHH----------------hhcCCccccch---hccEEecCC--eeE
Confidence            34444778888877774 789999999999994444                33445555555   466652211  122


Q ss_pred             Eee----------CCCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602        275 VLT----------SPHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE  341 (1083)
Q Consensus       275 ~~~----------~~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e  341 (1083)
                      .+-          ..+...||++|| ++++...|||+...  ++||+|||||+++|++.||+|  +++++.++++++.++
T Consensus       378 ~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~--~q~~~e~~~~l~~~~  455 (686)
T PLN02908        378 GLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRE--DQIKDEVKGVLDFLD  455 (686)
T ss_pred             EEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCH--HHHHHHHHHHHHHHH
Confidence            111          112345899999 99999999999655  789999999999999999999  689999999999999


Q ss_pred             HHHHHhCCcEEEEeccC------CCcchhhh---------ceeeEEEee--CCCC-------------cEEeeeccc-Cc
Q psy11602        342 EFYADLGIAYRVVNIVS------GALNHAAA---------KKLDLEAWF--PGSG-------------AFRELVSCS-NC  390 (1083)
Q Consensus       342 ~~~~~L~lpyRvv~~~~------~dl~~~a~---------~~~DiE~w~--P~~~-------------~y~Ev~S~s-n~  390 (1083)
                      ++|+.||+||++. +.+      |+++.-..         .+.+.. |-  |+.+             ...++.-|+ ..
T Consensus       456 ~v~~~lG~~~~~~-ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~-~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q  533 (686)
T PLN02908        456 YVYEVFGFTYELK-LSTRPEKYLGDLETWDKAEAALTEALNAFGKP-WQLNEGDGAFYGPKIDITVSDALKRKFQCATVQ  533 (686)
T ss_pred             HHHHHCCCcEEEE-EeCCccccCCCHHHHHHHHHHHHHHHHHcCCC-cEECCCceeecccceEEEEEeccCCEeecccee
Confidence            9999999999974 333      22222110         111111 11  3332             233344444 35


Q ss_pred             ccccc-cccceEEecccCC-CCceeeEEeecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        391 LAYQS-RRLLVRYGQTKKM-NEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       391 ~d~qa-rrl~iry~~~~~~-~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      .||+- .|+++.|-++.+. ....-.+|-  +-.=.+.|+|++|+|++.   | .+|..|.|.
T Consensus       534 ~df~lp~~f~L~Y~~e~~~~~~~pv~ihr--ai~GsiERli~iL~e~~~---g-~~p~wlsp~  590 (686)
T PLN02908        534 LDFQLPIRFKLSYSAEDEAKIERPVMIHR--AILGSVERMFAILLEHYA---G-KWPFWLSPR  590 (686)
T ss_pred             ecccCHhhcCCEEECCCCCcCCCCEEEEe--CceEhHHHHHHHHHHHcC---C-CCCCCCCCc
Confidence            78873 6799999875321 012234443  122278999999999652   2 566555543

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.14  E-value=1.8e-11  Score=150.00  Aligned_cols=218  Identities=15%  Similarity=0.200  Sum_probs=141.7

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ceEEEEee
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KVEQFVLT  277 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~~~~~~~  277 (1083)
                      .+|..++.+.+. ..||.+|.+|.+...+.....                ++.+.+.+   .||++..-+  ....-+.+
T Consensus       210 ~~l~~~~~~~~~-~~Gy~ev~tP~le~~~l~~~s----------------g~~~~~~~---~my~~~d~~~~~~~LRP~~  269 (575)
T PRK12305        210 REIEDYLRKEHL-KRGYEFVYTPHIGKSDLWKTS----------------GHLDNYKE---NMFPPMEIDEEEYYLKPMN  269 (575)
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCccCCHHHHhhc----------------CCcccchh---hcccccccCCceEEEecCC
Confidence            556666666663 789999999999995555331                22222222   344442111  11111111


Q ss_pred             CC-------CCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh
Q psy11602        278 SP-------HDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL  347 (1083)
Q Consensus       278 ~~-------~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L  347 (1083)
                      -|       +...||++|| ++++...|||+.+.  ++||+|+|||+++++..++.+  +++.+.+.+++..+.++|+.|
T Consensus       270 ~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~--~~~~~e~~e~i~l~~~~~~~l  347 (575)
T PRK12305        270 CPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTP--DQIEDEILKVLDFVLELLKDF  347 (575)
T ss_pred             CHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCH--HHHHHHHHHHHHHHHHHHHHc
Confidence            11       1123678899 99999999999655  589999999999999999987  678888999999999999999


Q ss_pred             CCcEEEEeccCCCcchhhhcee--eEEEeeCCCCcEEeeecccC----------------------------------cc
Q psy11602        348 GIAYRVVNIVSGALNHAAAKKL--DLEAWFPGSGAFRELVSCSN----------------------------------CL  391 (1083)
Q Consensus       348 ~lpyRvv~~~~~dl~~~a~~~~--DiE~w~P~~~~y~Ev~S~sn----------------------------------~~  391 (1083)
                      |||...+.+.+.++     .+|  |.|+|.++.+.++++.+.++                                  ..
T Consensus       348 gl~~~~i~l~~r~~-----~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~  422 (575)
T PRK12305        348 GFKDYYLELSTREP-----EKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQL  422 (575)
T ss_pred             CCCeEEEEEeCCCh-----hhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceee
Confidence            99977788888774     333  55566544333332222111                                  13


Q ss_pred             ccc-ccccceEEecccCCCCceeeEEeeccc-ccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        392 AYQ-SRRLLVRYGQTKKMNEKIEFVHMLNAT-ACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       392 d~q-arrl~iry~~~~~~~~~~~~~htln~t-~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      ||+ +.|++++|.+.   ++....++++-+. +-.+.|+|++|+|+|..    .+|..++|+
T Consensus       423 ~~~~~~~fdl~y~~~---~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~----~~p~~~~p~  477 (575)
T PRK12305        423 DFNLPERFDLEYTAE---DGKRQRPVMIHRALFGSIERFIGILTEHYAG----AFPFWLAPV  477 (575)
T ss_pred             ecccHhhCCCEEECC---CCCccCceEEEccccccHHHHHHHHHHHhCC----CCCCCCCCc
Confidence            443 36788888764   2333444443222 22689999999997642    677767775

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=7e-11  Score=139.83  Aligned_cols=162  Identities=16%  Similarity=0.284  Sum_probs=141.3

Q ss_pred             cchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCC
Q psy11602        283 ESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGA  360 (1083)
Q Consensus       283 ~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~d  360 (1083)
                      .||++|| .+|+....||.. +.++||+|.++|. ....+..|.+.+++++.+++|+..+.+|+  |.||+.+..+++++
T Consensus       123 ~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~-mkdaySfh~~~e~a~~~y~~~~~~Y~~if--~~i~l~~~~~~ad~  199 (500)
T COG0442         123 RSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFL-MKDAYSFHADEEDAEETYEKMLDAYSRIF--LRLPLIFGPVPADE  199 (500)
T ss_pred             hhhhhCCcceeeeeeEEeccccCCCCccchheee-ecccccccCCHHHHHHHHHHHHHHHHHHH--HhCCceEEeecccC
Confidence            3899999 999999999995 5599999999999 67777777777999999999999999999  77777777888889


Q ss_pred             cchhhhceeeEEEeeCCCCcEEeeecccCccccccccc-ceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCC
Q psy11602        361 LNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRL-LVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE  439 (1083)
Q Consensus       361 l~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl-~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~  439 (1083)
                      -..++..++-++|.|| +++=.+|+.|.++++..++.. .+.|++..  .+...||||.  |.....|.+.+++-.|.++
T Consensus       200 g~~Gg~~S~eF~~l~p-d~ge~qi~ts~~y~aN~e~a~~~~~~~~~~--~~~~~~v~t~--s~~~s~r~~~~~i~i~GDn  274 (500)
T COG0442         200 GFIGGSYSHEFEALMP-DGGEDQIATSHHYGANFEKAFIDIKFEDEE--EGELEYVHTT--SYGISTRIIGAAILIHGDN  274 (500)
T ss_pred             CCCCCccceEEEEEcc-CCCccEEEEecchHHhHHHhccCCCccccc--cccceEeccc--ceEEEeeeeeEEEEEecCC
Confidence            8999999999999999 666689999999999999999 88888653  2568899998  4455589999999999999


Q ss_pred             CceecCccccccC
Q psy11602        440 TGVRIPDCLRKFV  452 (1083)
Q Consensus       440 ~Gi~iP~~L~py~  452 (1083)
                      +|.++|+.++|.-
T Consensus       275 ~G~v~Pp~vA~~q  287 (500)
T COG0442         275 EGLVLPPIVADIQ  287 (500)
T ss_pred             CCccCCchhccce
Confidence            9999998888763

>KOG1512|consensus

Probab=99.06  E-value=5.5e-11  Score=127.11  Aligned_cols=98  Identities=22%  Similarity=0.430  Sum_probs=88.0

Q ss_pred             eeccccCCCCCCCCc----eeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCc
Q psy11602        632 VCCVCLGERSDDVNE----IVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNE  707 (1083)
Q Consensus       632 ~c~~c~g~~~~~~~~----l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~  707 (1083)
                      .|.+|+.....++++    ++.|..|-.+.|+.|+....-++....+|  .|.|.+|.       .|.||+++..  .++
T Consensus       260 ~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY--~W~C~~C~-------lC~IC~~P~~--E~E  328 (381)
T KOG1512|consen  260 ERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTY--FWKCSSCE-------LCRICLGPVI--ESE  328 (381)
T ss_pred             hhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhc--chhhcccH-------hhhccCCccc--chh
Confidence            599999888777766    99999999999999999999999999999  99999988       9999997754  689


Q ss_pred             EEEcccCCcccccccccccccCCCcccCCCCCCCCcccc--cccC
Q psy11602        708 IVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCE--SCRA  750 (1083)
Q Consensus       708 iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd--~C~~  750 (1083)
                      ++|||.|+.++|..|.|....          |.|.|.||  .|..
T Consensus       329 ~~FCD~CDRG~HT~CVGL~~l----------P~G~WICD~~C~~~  363 (381)
T KOG1512|consen  329 HLFCDVCDRGPHTLCVGLQDL----------PRGEWICDMRCREA  363 (381)
T ss_pred             eeccccccCCCCccccccccc----------cCccchhhhHHHHh
Confidence            999999999999999999887          78999999  4443

>KOG0957|consensus

Probab=98.96  E-value=6.6e-11  Score=134.21  Aligned_cols=71  Identities=46%  Similarity=0.823  Sum_probs=62.3

Q ss_pred             cccccccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCccccccccccccccc
Q psy11602        547 ICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSK  626 (1083)
Q Consensus       547 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~~k~~~~~~  626 (1083)
                      .|..|.+.-..|.|+.|           +||||||+.|||+||||.+|||+|++.+ .++|||||++|+.|.++-...+-
T Consensus       240 ~Cs~Ced~~fARtGvci-----------~CdaGMCk~YfHVTCAQk~GlLvea~~e-~DiAdpfya~CK~Ht~r~~~K~~  307 (707)
T KOG0957|consen  240 TCSACEDKIFARTGVCI-----------RCDAGMCKEYFHVTCAQKLGLLVEATDE-NDIADPFYAFCKKHTNRDNLKPY  307 (707)
T ss_pred             hhccccchhhhhcceee-----------eccchhhhhhhhhhHHhhhcceeecccc-ccchhhHHHHHHhhcchhhhhhh
Confidence            59999999999999988           9999999999999999999999999997 48999999999999876544433


Q ss_pred             CCC
Q psy11602        627 FSK  629 (1083)
Q Consensus       627 ~~~  629 (1083)
                      ..|
T Consensus       308 rrn  310 (707)
T KOG0957|consen  308 RRN  310 (707)
T ss_pred             hhh
Confidence            333

>PRK07080 hypothetical protein; Validated

Probab=98.94  E-value=2.4e-09  Score=119.12  Aligned_cols=186  Identities=17%  Similarity=0.199  Sum_probs=146.3

Q ss_pred             CCCCCCCCCCCCeeEecCChHHHHHHHhcc-cCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCC
Q psy11602          9 GDSAPEKDELDDKYLIATSEQPICAVHRDS-WLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSP   87 (1083)
Q Consensus         9 ~~~~~~dr~~~~~~L~pTsE~~i~~l~~~~-i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~   87 (1083)
                      |+.-.++....+++|.|..-.+++.++... .++..-  ..+--.++|||+|. +     +++-|+.+|.|.|...+-.+
T Consensus       116 ~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g--~~~dv~g~CFR~E~-s-----~dl~Rl~~F~mrE~V~iGt~  187 (317)
T PRK07080        116 GEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADG--RLVDVASYCFRHEP-S-----LDPARMQLFRMREYVRIGTP  187 (317)
T ss_pred             cCchhhhcCCCcceecccccccchhhhccCcccCCCC--cEEEeeeeeeccCC-C-----CCcHHHhheeeeEEEEecCH
Confidence            344467778889999999999999999876 455333  77888999999999 2     36999999999999888877


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCccc--------ceeEeEEEEec--CCCceeEEEEcCCCchhh
Q psy11602         88 HDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAA--------AKKLDLEAWFP--GSGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus        88 ~~e~s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~a--------s~~~diE~~~P--~~~~~~ev~s~s~cgdyq  157 (1083)
                      +  .+.+..+..++....+.+.|||+|.+.-+..-=-|.+.        .-.+-+|.++|  +.+....|.|+...+|+|
T Consensus       188 e--~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDPFF~~~gk~~a~~Qr~~~lKfEl~vpi~~~~~~tA~~S~NyH~dhF  265 (317)
T PRK07080        188 E--QIVAFRQSWIERGTAMADALGLPVEIDLANDPFFGRGGKIVAASQREQNLKFELLIPIYSDAPPTACMSFNYHMDHF  265 (317)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHhCCceeEeecCCccccccchhhhhhhhhccceeEEEEecCCCCCceEEEEEehhhhcc
Confidence            6  48888889999999999999999998777532222211        12345688887  556778999999999999


Q ss_pred             hhcccceeccCCCc-cccccccchhheeheeccccCCCeeEeccccccc
Q psy11602        158 SRRLLVRYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKF  205 (1083)
Q Consensus       158 s~rl~i~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~  205 (1083)
                      +++++|+..+.... -.|.|.+++|++.|+|.+|+-+ -..||..++.-
T Consensus       266 g~~f~I~~~~g~~ahTgCvGFGlER~a~All~~hG~d-~~~WP~~Vr~~  313 (317)
T PRK07080        266 GLTWGIRTADGAVAHTGCVGFGLERLALALFRHHGLD-PAAWPAAVRDV  313 (317)
T ss_pred             ccccCcccCCCCEeEEeeeecCHHHHHHHHHHHhCCC-hhhccHHHHHH
Confidence            99999986655433 7788999999999999998864 35688766543

>PLN02734 glycyl-tRNA synthetase

Probab=98.92  E-value=2e-09  Score=131.06  Aligned_cols=132  Identities=23%  Similarity=0.317  Sum_probs=102.1

Q ss_pred             CeeEecCChHH-HHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCch--------
Q psy11602         20 DKYLIATSEQP-ICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDD--------   90 (1083)
Q Consensus        20 ~~~L~pTsE~~-i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e--------   90 (1083)
                      .-||+|=-=+. +.++-+-.-..-..||+-.+||+..||+|+    .|+.||+|+|||+|.|+=+|..|+..        
T Consensus       248 ~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEI----sPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v  323 (684)
T PLN02734        248 VGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEI----SPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSEV  323 (684)
T ss_pred             cceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhccc----CcccceeeechhhhhhhheecCcccccccchhhh
Confidence            56888843333 344433344566799999999999999999    56679999999999999999999831        


Q ss_pred             -------------------------HH-------HHHHHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEE
Q psy11602         91 -------------------------ES-------WKMLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLE  135 (1083)
Q Consensus        91 -------------------------~s-------~~~~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE  135 (1083)
                                               +|       .+++.-.+.-...|+.+|||+   .|.-+-.+.+|-.-|.-++|+|
T Consensus       324 ~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E  403 (684)
T PLN02734        324 ADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAE  403 (684)
T ss_pred             hhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEE
Confidence                                     11       336666677777889999996   4555666778999999999999


Q ss_pred             EEecCCCceeEEEEcCCCchhh
Q psy11602        136 AWFPGSGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus       136 ~~~P~~~~~~ev~s~s~cgdyq  157 (1083)
                      +.+|-  +|+|+.-|.+=+||=
T Consensus       404 ~~~~~--GWiE~vG~AdRs~yD  423 (684)
T PLN02734        404 IECSY--GWIECVGIADRSAYD  423 (684)
T ss_pred             EecCC--CcEEEEEeccccccc
Confidence            99964  799999888777664

>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type

Probab=98.89  E-value=2.2e-09  Score=128.79  Aligned_cols=132  Identities=25%  Similarity=0.375  Sum_probs=100.8

Q ss_pred             CCeeEecCChHHHHHHHhc-ccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRD-SWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~-~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ...||+|--=+.|---|.+ .-.+-..||+-++||+..||+|+    .|+.||+|+|||++.|+=.|+.|+ +.....|.
T Consensus       155 ~~~yLRPETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEI----sPr~~l~R~REF~q~EiE~F~~p~-~~~~~~f~  229 (551)
T TIGR00389       155 RKGYLRPETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEI----SPRNGLFRVREFEQAEIEFFVHPL-DKSHPKFE  229 (551)
T ss_pred             cccccccccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhccc----CcccceEEeehhhhchhheecCcc-cccchhhH
Confidence            3678898544554444444 34567799999999999999999    566799999999999999999996 22333333


Q ss_pred             HHH----------------------------------HHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecC
Q psy11602         98 EMI----------------------------------QNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPG  140 (1083)
Q Consensus        98 ~~~----------------------------------~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~  140 (1083)
                      .+.                                  .....|+.+|||+   .|.-+-.+.+|-.-|..++|+|+.+|-
T Consensus       230 ~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~  309 (551)
T TIGR00389       230 EVKQDILPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPY  309 (551)
T ss_pred             HHHHHHHhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCC
Confidence            332                                  3336789999995   455566777899999999999999974


Q ss_pred             CCceeEEEEcCCCchhh
Q psy11602        141 SGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus       141 ~~~~~ev~s~s~cgdyq  157 (1083)
                        +|.|+.-|.+=+||-
T Consensus       310 --Gw~E~~G~a~R~~yD  324 (551)
T TIGR00389       310 --GWIECVGIADRGDYD  324 (551)
T ss_pred             --CcEEEEEeccccccC
Confidence              799999888877774

This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.

>PRK14894 glycyl-tRNA synthetase; Provisional

Probab=98.85  E-value=1.3e-08  Score=119.19  Aligned_cols=132  Identities=21%  Similarity=0.336  Sum_probs=110.7

Q ss_pred             CCeeEecCChHHHHHHHhc-ccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRD-SWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~-~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ...||+|--=+.|---|.+ .-.+-+.||+-++||+..||+|+    .|+.||+|+|||++.|+=.|+.|..  +.+++.
T Consensus       137 ~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEI----sPr~~l~R~REF~q~EiE~Fv~P~~--~~~~~~  210 (539)
T PRK14894        137 SFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEI----NPRNFLFRVREFEQMEIEYFVMPGT--DEEWHQ  210 (539)
T ss_pred             cceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCcc----CCCCceeecccchhheEEEEeCCCc--hHHHHH
Confidence            4579999555555444444 34577799999999999999999    5666999999999999999999985  778888


Q ss_pred             HHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhh
Q psy11602         98 EMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyq  157 (1083)
                      -.++.-..|+.+|||+   +|.-+-...+|..-|..++|+|+.+|+ -+|.|+.-|.+=+||-
T Consensus       211 y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~-~Gw~E~~Gia~RtdyD  272 (539)
T PRK14894        211 RWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPN-IGVQEIEGIANRTDYD  272 (539)
T ss_pred             HHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCC-CCeEEEEEeecccccC
Confidence            8888888999999997   677777888999999999999999983 3699999998888874

>KOG1244|consensus

Probab=98.81  E-value=1.6e-09  Score=115.61  Aligned_cols=49  Identities=27%  Similarity=0.641  Sum_probs=46.5

Q ss_pred             ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCc
Q psy11602       1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
                      .|++.+|..|.+||.+.|+++||.||.||.+|||+||+|||..-|.|+|
T Consensus       275 rwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegsw  323 (336)
T KOG1244|consen  275 RWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSW  323 (336)
T ss_pred             eeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCch
Confidence            4667999999999999999999999999999999999999999999994

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=7.5e-09  Score=120.71  Aligned_cols=134  Identities=25%  Similarity=0.412  Sum_probs=104.9

Q ss_pred             CCeeEecC-ChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCc--------
Q psy11602         19 DDKYLIAT-SEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHD--------   89 (1083)
Q Consensus        19 ~~~~L~pT-sE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~--------   89 (1083)
                      ...||+|- +--.+.++=+-.-..-+.||+-++||+..||+|+    .|+.||+|+|||++.|+=.|..|..        
T Consensus       159 ~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEI----SPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~  234 (558)
T COG0423         159 SLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEI----SPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNE  234 (558)
T ss_pred             cceeecccccchhhhhhHHHHHHhccCCCeEEEeechhhcccc----CcccceeehhhhhhhheeeEECCCcccCcchhh
Confidence            46799994 4434444433334567799999999999999999    6667999999999999999999984        


Q ss_pred             -----------hHHHH----------H-----HHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecC
Q psy11602         90 -----------DESWK----------M-----LDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPG  140 (1083)
Q Consensus        90 -----------e~s~~----------~-----~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~  140 (1083)
                                 +..++          +     +.-.+.....|+..|||+   .|.-+-...+|.--|..++|+|+.+| 
T Consensus       235 v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~-  313 (558)
T COG0423         235 VKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFP-  313 (558)
T ss_pred             hhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecC-
Confidence                       21111          1     223445566788899998   67777889999999999999999998 


Q ss_pred             CCceeEEEEcCCCchhh
Q psy11602        141 SGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus       141 ~~~~~ev~s~s~cgdyq  157 (1083)
                      .++|+|+.-+.+=+||-
T Consensus       314 ~~gWiE~~GiAdRtdYD  330 (558)
T COG0423         314 FGGWIELVGIADRTDYD  330 (558)
T ss_pred             CCceEEEEEeecccccc
Confidence            45599999999988885

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=98.78  E-value=1.2e-09  Score=84.39  Aligned_cols=36  Identities=39%  Similarity=1.151  Sum_probs=20.8

Q ss_pred             CCcEEEcccCCcccccccccccccCCCcccCCCCCCCCccccccc
Q psy11602        705 VNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR  749 (1083)
Q Consensus       705 ~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~  749 (1083)
                      .|+||+|++|++.||++|||+..++.         ...|+|++|+
T Consensus         1 ~n~ll~C~~C~v~VH~~CYGv~~~~~---------~~~W~C~~C~   36 (36)
T PF13831_consen    1 TNPLLFCDNCNVAVHQSCYGVSEVPD---------GDDWLCDRCE   36 (36)
T ss_dssp             -CEEEE-SSS--EEEHHHHT-SS--S---------S-----HHH-
T ss_pred             CCceEEeCCCCCcCChhhCCcccCCC---------CCcEECCcCC
Confidence            37999999999999999999988742         3369999995

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.3e-08  Score=123.04  Aligned_cols=237  Identities=19%  Similarity=0.241  Sum_probs=154.1

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|.|..--.-.-+|.+...|||+||+|++..+.+||.|..   -.-.||.|+|.|++-|+..|+.++  +..+.+.
T Consensus       273 ~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S---Gal~GL~RvR~ftqdDaHifc~~d--Qi~~E~~  347 (589)
T COG0441         273 DREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS---GALHGLMRVRGFTQDDAHIFCTPD--QIKDEFK  347 (589)
T ss_pred             ChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc---chhhccccccceeecccceeccHH--HHHHHHH
Confidence            47899999999999999999999999999999999999999994   356799999999999999999954  5888888


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCC--CC--------ccc----ceeEeEEEEec-CCCce----------eEEEEcCC
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGA--LN--------HAA----AKKLDLEAWFP-GSGAF----------RELVSCSN  152 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgd--lg--------~~a----s~~~diE~~~P-~~~~~----------~ev~s~s~  152 (1083)
                      ..++....+++.+|+....+...+.+  +|        -++    ...+.++.+-. +.+.|          +.++.-..
T Consensus       348 ~~~~~i~~v~~~fg~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q  427 (589)
T COG0441         348 GILELILEVYKDFGFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQ  427 (589)
T ss_pred             HHHHHHHHHHHhcCCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCccee
Confidence            88888888999999984444444443  11        111    12223333222 22111          11222222


Q ss_pred             Cc----hhh-hhcccceeccCCCc------c-ccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccc
Q psy11602        153 CL----DYQ-SRRLLVRYGQTKQK------I-YATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFV  220 (1083)
Q Consensus       153 cg----dyq-s~rl~i~y~~~~~~------~-n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~  220 (1083)
                      |+    ||. .+||++.|.+.++.      + -+...++.|.|++|||++..    .+|..|+|.+     +      ++
T Consensus       428 ~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~~~G----~~P~WLaPvQ-----v------~V  492 (589)
T COG0441         428 LGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEHYAG----ALPTWLAPVQ-----V------RV  492 (589)
T ss_pred             cceEEEecCChhhceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHhccC----CCcccCCccE-----E------EE
Confidence            32    232 67999999986553      3 34455679999999996443    8999999998     3      34


Q ss_pred             cCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCC
Q psy11602        221 KTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSP  279 (1083)
Q Consensus       221 ~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~  279 (1083)
                        +||..+....+.+-.+.++..++   +...+.-.+.+---+|.++.+++.-+.++.-
T Consensus       493 --ipV~~~~~~ya~~v~~~L~~~gi---RvdvD~~~e~l~kKIR~a~~~kipyiiVvG~  546 (589)
T COG0441         493 --IPVADEHLDYAKEVAEKLRKAGI---RVDIDDRNEKLGKKIREAGTQKIPYVIVVGD  546 (589)
T ss_pred             --EEeChHHHHHHHHHHHHHHHcCC---eeeecccccchHHHHHHHHhcCCCEEEEEch
Confidence              45554333222210011111111   1222222221111178888888888888866

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain

Probab=98.72  E-value=2.5e-08  Score=105.36  Aligned_cols=132  Identities=20%  Similarity=0.250  Sum_probs=107.6

Q ss_pred             hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCC--cEEEEeccCCCcc-hhhh
Q psy11602        290 EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI--AYRVVNIVSGALN-HAAA  366 (1083)
Q Consensus       290 ~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~l--pyRvv~~~~~dl~-~~a~  366 (1083)
                      +++....+||....+.++.|+++|.+++...+..+..  ....|.+++..++++++.||+  +++++.....+.. +...
T Consensus        77 ~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~--~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g  154 (211)
T cd00768          77 RLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGE--EASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAG  154 (211)
T ss_pred             EEEEEcceeecCCCccccccceeEEEcCEEEEcCCch--hHHHHHHHHHHHHHHHHHcCCCcceEEEecCchhhccccCC
Confidence            5666677888766566678899999999999887742  234599999999999999997  6887645555544 3788


Q ss_pred             ceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHH
Q psy11602        367 KKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRV  428 (1083)
Q Consensus       367 ~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~  428 (1083)
                      +++||++|+|. +++.||++++.+.+.++++++|+|.++   +++..++|++|++ ++++|+
T Consensus       155 ~~~~i~~~~~~-~~~~eig~~g~~~~~~~~~~~l~~~~~---~~~~~~p~~~~~~-~~~~R~  211 (211)
T cd00768         155 PGFEIEVDHPE-GRGLEIGSGGYRQDEQARAADLYFLDE---ALEYRYPPTIGFG-LGLERL  211 (211)
T ss_pred             ceEEEEEEccC-CCeEEEeeceeecCchhHhhhhheecc---cccccCceeecCc-cCccCC
Confidence            99999999996 578999999999999999999999865   3567799999888 898884

Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=98.68  E-value=7.8e-08  Score=119.58  Aligned_cols=219  Identities=15%  Similarity=0.218  Sum_probs=133.9

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--cceEEEEee
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--EKVEQFVLT  277 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d~~~~~~~~  277 (1083)
                      ..|..++.+.+. ..||.+|.+|++...+.....                ++...+.+   .||++...  +.+..=+..
T Consensus       274 ~~i~~~~~~~~~-~~Gy~ei~tP~le~~~l~~~~----------------g~~~~~~~---~my~~~d~~~~~~~LRP~~  333 (638)
T PRK00413        274 RELERYIRRKLR-KAGYQEVKTPQILDRELWETS----------------GHWDHYRE---NMFPTTESDGEEYALKPMN  333 (638)
T ss_pred             HHHHHHHHHHHH-HCCCEEEECCeeCCHHHHHhc----------------CChhhhhh---ccceeecCCCcEEEEecCC
Confidence            445555555553 789999999999995555321                11111122   34443221  122221111


Q ss_pred             C-------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHh
Q psy11602        278 S-------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADL  347 (1083)
Q Consensus       278 ~-------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L  347 (1083)
                      -       .+...||++|| +++....|||+.+.  .+||+|+|||++++...++.+  +.+.+.+.+++..+.++|+.|
T Consensus       334 ~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~--~~~~~e~~eii~l~~~~~~~l  411 (638)
T PRK00413        334 CPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTP--EQIEEEVKKVIDLILDVYKDF  411 (638)
T ss_pred             cHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCH--HHHHHHHHHHHHHHHHHHHHc
Confidence            1       11224678889 99999999999766  479999999999999999987  567778899999999999999


Q ss_pred             CC-cEEEEeccC---CCcchhhh------------------------------ceeeEEEeeCCCCcEEeeecccCcccc
Q psy11602        348 GI-AYRVVNIVS---GALNHAAA------------------------------KKLDLEAWFPGSGAFRELVSCSNCLAY  393 (1083)
Q Consensus       348 ~l-pyRvv~~~~---~dl~~~a~------------------------------~~~DiE~w~P~~~~y~Ev~S~sn~~d~  393 (1083)
                      || +|++. +.+   +.+|....                              .++|+.+ ..+.++...+++.  ..||
T Consensus       412 g~~~~~i~-l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~~d~  487 (638)
T PRK00413        412 GFEDYEVK-LSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQL-KDALGREWQCGTI--QLDF  487 (638)
T ss_pred             CCceEEEE-EecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEe-ecCCCCeEEeccE--eecc
Confidence            99 46553 332   33433321                              1222222 2233444444332  2566


Q ss_pred             c-ccccceEEecccCCCCceeeEEee-cccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        394 Q-SRRLLVRYGQTKKMNEKIEFVHML-NATACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       394 q-arrl~iry~~~~~~~~~~~~~htl-n~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      + .+|+++.|...   ++....+.++ .|.+..+.|+|++|+|.+..    .+|..+.|+
T Consensus       488 ~~~~~~dl~Yt~~---~~~~~~p~~i~~~~~g~~eRli~~l~e~~~~----~~p~~~~p~  540 (638)
T PRK00413        488 NLPERFDLTYVGE---DGEKHRPVMIHRAILGSMERFIGILIEHYAG----AFPTWLAPV  540 (638)
T ss_pred             cChhhcCCEEECC---CCCccCcEEEEecceehHHHHHHHHHHHcCC----CCCcccCcc
Confidence            4 58889888654   2222333332 23333589999999998742    477666654

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=98.58  E-value=9.7e-09  Score=95.51  Aligned_cols=67  Identities=19%  Similarity=0.283  Sum_probs=54.8

Q ss_pred             ecccccccCCcEEecccc--cCceeee-cCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeeccCC
Q psy11602        817 HLVCALYIPGVAFGEVDR--LSNVTLF-EMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFP  888 (1083)
Q Consensus       817 Hv~CAlw~pev~f~~~~~--~~pv~~~-~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~  888 (1083)
                      |+.||+|+|||.+.+...  +.++... .++..++. ..|++|+++    .||+|+|...+|...||+.+....+
T Consensus         1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~-~~C~~C~~~----~Ga~i~C~~~~C~~~fH~~CA~~~~   70 (90)
T PF13771_consen    1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRK-LKCSICKKK----GGACIGCSHPGCSRSFHVPCARKAG   70 (90)
T ss_pred             ChHHheecCceEEeCCCccccccHHhHHHHHHHHhC-CCCcCCCCC----CCeEEEEeCCCCCcEEChHHHccCC
Confidence            899999999999999874  4445443 57777776 489999974    6999999999999999997765544

>PRK07080 hypothetical protein; Validated

Probab=98.26  E-value=4e-06  Score=93.83  Aligned_cols=143  Identities=13%  Similarity=0.152  Sum_probs=117.3

Q ss_pred             ccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhh---------
Q psy11602        296 EEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAA---------  366 (1083)
Q Consensus       296 ~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~---------  366 (1083)
                      .|||+... .++-|+..|.+.|.+.+-+|  ++..+..+..++.+..+.+.|||+|+|..-  .|=.|...         
T Consensus       160 ~CFR~E~s-~dl~Rl~~F~mrE~V~iGt~--e~v~~~r~~w~e~~~~l~~~LgL~~~ve~A--nDPFF~~~gk~~a~~Qr  234 (317)
T PRK07080        160 YCFRHEPS-LDPARMQLFRMREYVRIGTP--EQIVAFRQSWIERGTAMADALGLPVEIDLA--NDPFFGRGGKIVAASQR  234 (317)
T ss_pred             eeeccCCC-CCcHHHhheeeeEEEEecCH--HHHHHHHHHHHHHHHHHHHHhCCceeEeec--CCccccccchhhhhhhh
Confidence            48888664 68999999999999999999  578899999999999999999999998744  45444443         


Q ss_pred             -ceeeEEEeeC--CCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCcee
Q psy11602        367 -KKLDLEAWFP--GSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVR  443 (1083)
Q Consensus       367 -~~~DiE~w~P--~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~  443 (1083)
                       -.+-+|.|+|  +.++..-|.|+....|+++.+.+|+..+.       ..+||- +.|..+.|+..|+|.+|.-+- -.
T Consensus       235 ~~~lKfEl~vpi~~~~~~tA~~S~NyH~dhFg~~f~I~~~~g-------~~ahTg-CvGFGlER~a~All~~hG~d~-~~  305 (317)
T PRK07080        235 EQNLKFELLIPIYSDAPPTACMSFNYHMDHFGLTWGIRTADG-------AVAHTG-CVGFGLERLALALFRHHGLDP-AA  305 (317)
T ss_pred             hccceeEEEEecCCCCCceEEEEEehhhhccccccCcccCCC-------CEeEEe-eeecCHHHHHHHHHHHhCCCh-hh
Confidence             2345677776  66789999999999999999999998653       468988 999999999999999987542 35


Q ss_pred             cCccccccC
Q psy11602        444 IPDCLRKFV  452 (1083)
Q Consensus       444 iP~~L~py~  452 (1083)
                      ||+..|.=+
T Consensus       306 WP~~Vr~~l  314 (317)
T PRK07080        306 WPAAVRDVL  314 (317)
T ss_pred             ccHHHHHHh
Confidence            788776543

>KOG4163|consensus

Probab=98.12  E-value=7.1e-07  Score=101.33  Aligned_cols=165  Identities=16%  Similarity=0.133  Sum_probs=139.5

Q ss_pred             cchhhhh-hhhcccccccc-cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH-hCCcEEEEeccCC
Q psy11602        283 ESWKMLD-EMIQNSEEFYA-DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD-LGIAYRVVNIVSG  359 (1083)
Q Consensus       283 ~s~~~~~-~~~~~~~~~~~-~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~-L~lpyRvv~~~~~  359 (1083)
                      +||+||| ++-+=.+.-|- -+++..++|.++|- ++.-+..+...++|++..-+||.++..+|.. |-+|..--.=...
T Consensus       179 ~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFL-WQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~  257 (551)
T KOG4163|consen  179 QSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFL-WQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEK  257 (551)
T ss_pred             HhhccCchhhhhhhhheeeeccCCCcchhhhHHH-HhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchh
Confidence            4889999 55555554444 67899999999995 6666666666689999999999999999765 5777766666778


Q ss_pred             CcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCC
Q psy11602        360 ALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE  439 (1083)
Q Consensus       360 dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~  439 (1083)
                      +.+.++..++-+|+++|..++=.+=++-++++..+|+-++|.|.+.  ..+.++||+. |+-|+. +|+|-+++=.|.++
T Consensus       258 EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~--~~g~~~fv~Q-nSWg~s-TRtiGvmiM~HgDd  333 (551)
T KOG4163|consen  258 EKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDP--GEGEKEFVWQ-NSWGLS-TRTIGVMIMTHGDD  333 (551)
T ss_pred             hhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecCC--Cccchhheee-cccccc-cceeeEEEEEecCC
Confidence            8899999999999999999999999999999999999999999986  2567889986 577776 89999999999999


Q ss_pred             CceecCccccccC
Q psy11602        440 TGVRIPDCLRKFV  452 (1083)
Q Consensus       440 ~Gi~iP~~L~py~  452 (1083)
                      .|+++|+.+++.-
T Consensus       334 kGLvLPPrVA~vQ  346 (551)
T KOG4163|consen  334 KGLVLPPRVAPVQ  346 (551)
T ss_pred             cccccCCcccceE
Confidence            9999999999874

>PRK14894 glycyl-tRNA synthetase; Provisional

Probab=98.03  E-value=2.2e-05  Score=92.83  Aligned_cols=129  Identities=17%  Similarity=0.292  Sum_probs=102.2

Q ss_pred             cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcE
Q psy11602        305 RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAF  381 (1083)
Q Consensus       305 rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y  381 (1083)
                      .||||+++|+..|+=.|+.|+  ++.++|...++....||.+||||   .|.-.....+|..=|..++|+|+-+|+-| |
T Consensus       183 ~~l~R~REF~q~EiE~Fv~P~--~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~G-w  259 (539)
T PRK14894        183 NFLFRVREFEQMEIEYFVMPG--TDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIG-V  259 (539)
T ss_pred             CceeecccchhheEEEEeCCC--chHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCCCC-e
Confidence            699999999999999999995  57788999999999999999997   78888899999999999999999999554 9


Q ss_pred             EeeecccCcccccc----c-----------------ccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCC
Q psy11602        382 RELVSCSNCLAYQS----R-----------------RLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE  439 (1083)
Q Consensus       382 ~Ev~S~sn~~d~qa----r-----------------rl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~  439 (1083)
                      .|+.-+.|-+||-=    +                 ...+.|-+.  ..++.-.+|.+ =....+.|++.|+||+--.+
T Consensus       260 ~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~--~~~~~~iP~Vi-EpS~G~dR~~~a~l~~~y~~  335 (539)
T PRK14894        260 QEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQ--ASGRHVVPYVI-EPSAGVGRCMLAVMCEGYAE  335 (539)
T ss_pred             EEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEec--cCCcccCCcee-ecCcchhHHHHHHHHHHHhh
Confidence            99999999999731    1                 112233221  12233345666 56678899999999865443

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=2.2e-05  Score=95.48  Aligned_cols=227  Identities=18%  Similarity=0.222  Sum_probs=159.5

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceEE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVEQ  273 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~~  273 (1083)
                      |.++...|..|+...+. ..||.+|..|.+.+                .......++.+.+.+   ++|+....+ ....
T Consensus       219 G~~ir~~le~y~~~~~~-~~Gy~~V~TP~~~~----------------~~l~~~SGH~~~y~e---~mf~~~~~~~~~~l  278 (589)
T COG0441         219 GATIRNLLEDYVRTKLR-SYGYQEVKTPVLAD----------------LELWELSGHWDNYKE---DMFLTESDDREYAL  278 (589)
T ss_pred             cccHHHHHHHHHHHHHH-hcCceEecCCeeee----------------cccchhccchhhccc---cceeeccCChhhee
Confidence            44555778888888774 78999999999999                444455566666666   677777654 1122


Q ss_pred             EEeeC-------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        274 FVLTS-------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       274 ~~~~~-------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                      -+..-       -+...||++|| ++.....|+|+...  ..||.||+-|+.=..=.+|++  ++..+.+...++....+
T Consensus       279 KpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~--dQi~~E~~~~~~~i~~v  356 (589)
T COG0441         279 KPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTP--DQIKDEFKGILELILEV  356 (589)
T ss_pred             eeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccH--HHHHHHHHHHHHHHHHH
Confidence            22222       23466999999 99999999998544  579999999999888888997  67888899999999999


Q ss_pred             HHHhCCc-EEEEeccC---------CCcchhh----hceeeEEEeeC-CC----------------CcEEeeecccCccc
Q psy11602        344 YADLGIA-YRVVNIVS---------GALNHAA----AKKLDLEAWFP-GS----------------GAFRELVSCSNCLA  392 (1083)
Q Consensus       344 ~~~L~lp-yRvv~~~~---------~dl~~~a----~~~~DiE~w~P-~~----------------~~y~Ev~S~sn~~d  392 (1083)
                      |+.||+. |++-..-.         ||...++    .+.+.++.+.. |.                ++..+++.+.  .|
T Consensus       357 ~~~fg~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQ--lD  434 (589)
T COG0441         357 YKDFGFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQ--LD  434 (589)
T ss_pred             HHhcCCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEE--Ee
Confidence            9999998 77766554         2222222    35566666654 33                3444555553  57


Q ss_pred             ccc-cccceEEecccCCCCceeeEEeec-ccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        393 YQS-RRLLVRYGQTKKMNEKIEFVHMLN-ATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       393 ~qa-rrl~iry~~~~~~~~~~~~~htln-~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      |+. .|+++.|.+.+   ++.+.+-|+. +..=++.|.|++|||+|.   | .+|..|+|.-
T Consensus       435 f~lpeRF~l~Yv~~d---~~~~~PvmiHrai~GSiERfi~iLiE~~~---G-~~P~WLaPvQ  489 (589)
T COG0441         435 FNLPERFDLEYVDED---GEKKRPVIIHRAILGSIERFIGILLEHYA---G-ALPTWLAPVQ  489 (589)
T ss_pred             cCChhhceEEEEcCC---CCccCCEEEEeccchhHHHHHHHHHHhcc---C-CCcccCCccE
Confidence            775 49999999763   3334444442 444478999999999554   3 8899888863

>KOG4443|consensus

Probab=97.93  E-value=3.9e-06  Score=99.90  Aligned_cols=56  Identities=27%  Similarity=0.477  Sum_probs=53.1

Q ss_pred             CccccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCCCC
Q psy11602       1028 LSKQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083 (1083)
Q Consensus      1028 l~~~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~~W 1083 (1083)
                      ++..|+|+.+++|+.|+..+|+.+.++|+.||-.||.+|+.||++++|.+.|+|.|
T Consensus        59 l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk  114 (694)
T KOG4443|consen   59 LSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKK  114 (694)
T ss_pred             hcCCcccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHH
Confidence            56679999999999999999999999999999999999999999999999988776

>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

Probab=97.93  E-value=3.4e-05  Score=85.72  Aligned_cols=100  Identities=20%  Similarity=0.240  Sum_probs=79.4

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|+...+++-+++....+ .++|+|+|+++++||+|....|       |.|||.+.+.-.+..+. ..+
T Consensus        50 ~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~~~p~k~~y~g~vfR~e~~~~g-------~~re~~Q~g~Eiig~~~-~~~  120 (261)
T cd00773          50 FKDKGGRDLALRPDLTAPVARAVAENLLS-LPLPLKLYYIGPVFRYERPQKG-------RYREFYQVGVEIIGSDS-PLA  120 (261)
T ss_pred             EECCCCCEEEeCCCCcHHHHHHHHhcCcc-CCCCeEEEEEcCEEecCCCCCC-------CccceEEeceeeeCCCC-hHH
Confidence            35788899999999999999999987766 7899999999999999996433       78888877766666644 223


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCC
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGAL  124 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdl  124 (1083)
                      +   .|++....++++.||++-..+.+....+
T Consensus       121 d---aE~i~l~~~~l~~lg~~~~~i~l~~~~i  149 (261)
T cd00773         121 D---AEVIALAVEILEALGLKDFQIKINHRGI  149 (261)
T ss_pred             H---HHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            2   6799999999999998755555554444

HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.

>PLN02734 glycyl-tRNA synthetase

Probab=97.90  E-value=3.1e-05  Score=95.16  Aligned_cols=87  Identities=29%  Similarity=0.366  Sum_probs=76.0

Q ss_pred             cCceeEEEeeeEEEEEEeCCCch---------------------------------hH-------HHHHHHHHHHHHHHH
Q psy11602        305 RGIFRVHQFEKVEQFVLTSPHDD---------------------------------ES-------WKTLDEMIQNSEEFY  344 (1083)
Q Consensus       305 rGl~Rvhqf~kvE~f~~~~~~~~---------------------------------~s-------~~~~e~~~~~~e~~~  344 (1083)
                      .||+|+++|+..|+=+|++|+..                                 ++       .++|.-.+.....||
T Consensus       293 ~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl  372 (684)
T PLN02734        293 QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFL  372 (684)
T ss_pred             cceeeechhhhhhhheecCcccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHH
Confidence            69999999999999999999742                                 22       457888999999999


Q ss_pred             HHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccc
Q psy11602        345 ADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAY  393 (1083)
Q Consensus       345 ~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~  393 (1083)
                      .+|||+   .|.-.--+.+|..=|..++|+|+-+|-  .|.|++-|.+=+||
T Consensus       373 ~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~--GWiE~vG~AdRs~y  422 (684)
T PLN02734        373 TKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSY--GWIECVGIADRSAY  422 (684)
T ss_pred             HHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCC--CcEEEEEecccccc
Confidence            999996   677777889999999999999999964  59999999888886

>KOG0825|consensus

Probab=97.86  E-value=4.8e-06  Score=99.67  Aligned_cols=46  Identities=30%  Similarity=0.694  Sum_probs=42.6

Q ss_pred             cccccccccCCCCCCcceecCccCCC-ccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLY-YHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~-yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      +-..|.+|...+-.+.||+||.||.+ ||++||||||..+|-+.|.|
T Consensus       214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC  260 (1134)
T KOG0825|consen  214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYC  260 (1134)
T ss_pred             ccccceeeccCChHHhheeecccccceeeccccCcccccccccceec
Confidence            55679999999999999999999999 99999999999999999654

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.84  E-value=6e-06  Score=68.69  Aligned_cols=36  Identities=36%  Similarity=0.869  Sum_probs=33.3

Q ss_pred             ccccccCCCCCCcceecCccCCCccccCCCCCCCCC
Q psy11602       1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRM 1074 (1083)
Q Consensus      1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~ 1074 (1083)
                      .|.+|++.++.+.|+.||.|+.+||+.|+.||++..
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~   36 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAE   36 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHH
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhc
Confidence            388999999999999999999999999999999843

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type

Probab=97.73  E-value=9.3e-05  Score=89.61  Aligned_cols=146  Identities=23%  Similarity=0.327  Sum_probs=107.9

Q ss_pred             CcCceeEEEeeeEEEEEEeCCCchh--------------------------H-------HHHHHHHHHHHHHHHHHhCCc
Q psy11602        304 TRGIFRVHQFEKVEQFVLTSPHDDE--------------------------S-------WKTLDEMIQNSEEFYADLGIA  350 (1083)
Q Consensus       304 trGl~Rvhqf~kvE~f~~~~~~~~~--------------------------s-------~~~~e~~~~~~e~~~~~L~lp  350 (1083)
                      -.||+|+++|+..|+=.|++|+..+                          |       .+.+.-.+.....||..|||+
T Consensus       200 r~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~  279 (551)
T TIGR00389       200 RNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGIN  279 (551)
T ss_pred             ccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCC
Confidence            3699999999999999999996211                          1       124444555668899999995


Q ss_pred             ---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc------ccceEEecc----------------
Q psy11602        351 ---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR------RLLVRYGQT----------------  405 (1083)
Q Consensus       351 ---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar------rl~iry~~~----------------  405 (1083)
                         .|.-.-.+.+|..=|..++|+|+-+|-  .|.|++-+.+=+||-=.      --.+.|.+.                
T Consensus       280 ~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~--Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~  357 (551)
T TIGR00389       280 PDKLRFRQHDKNEMAHYAKDCWDFEFLTPY--GWIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNK  357 (551)
T ss_pred             HHHeeecccCcHHHhhhccccEeEEEecCC--CcEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecch
Confidence               677778889999999999999999974  59999999998886311      112233211                


Q ss_pred             ------------------------------------------------cCCCCceeeEEeecccccchhHHHHHHHhhcc
Q psy11602        406 ------------------------------------------------KKMNEKIEFVHMLNATACATTRVICAILETHQ  437 (1083)
Q Consensus       406 ------------------------------------------------~~~~~~~~~~htln~t~~a~~R~i~ailEn~q  437 (1083)
                                                                      +...++...+|++- .++.+.|+|.||||+..
T Consensus       358 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIe-pS~GIdRIi~ALle~~~  436 (551)
T TIGR00389       358 KKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIE-PSFGIDRIIYALLEHSY  436 (551)
T ss_pred             hhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEE-cccCHHHHHHHHHHhhC
Confidence                                                            11134566788884 55789999999999776


Q ss_pred             CCC--------ceecCccccccC
Q psy11602        438 TET--------GVRIPDCLRKFV  452 (1083)
Q Consensus       438 ~~~--------Gi~iP~~L~py~  452 (1083)
                      .++        ++.+|..|+|+-
T Consensus       437 ~e~~~~~~~r~vL~lp~~lAP~k  459 (551)
T TIGR00389       437 QEEVLDGEEREVLRLPPHLAPIK  459 (551)
T ss_pred             ccccccccccceeccCCccCCce
Confidence            621        368999999973

This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.

>KOG4443|consensus

Probab=97.65  E-value=2e-05  Score=93.96  Aligned_cols=97  Identities=22%  Similarity=0.525  Sum_probs=72.2

Q ss_pred             eccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCcEEEcc
Q psy11602        633 CCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECD  712 (1083)
Q Consensus       633 c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd  712 (1083)
                      |-+|.+....--..++.|++||..+|+.|+  .+.+-.....  ..|.|..+.       .|-.|.  ...+...+++|+
T Consensus        21 c~l~~s~G~~~ag~m~ac~~c~~~yH~~cv--t~~~~~~~l~--~gWrC~~cr-------vCe~c~--~~gD~~kf~~Ck   87 (694)
T KOG4443|consen   21 CPLCGSSGKGRAGRLLACSDCGQKYHPYCV--TSWAQHAVLS--GGWRCPSCR-------VCEACG--TTGDPKKFLLCK   87 (694)
T ss_pred             hhhhccccccccCcchhhhhhcccCCcchh--hHHHhHHHhc--CCcccCCce-------eeeecc--ccCCcccccccc
Confidence            777777666666779999999999999997  2222222111  247775444       888888  556789999999


Q ss_pred             cCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        713 SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       713 ~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      .|++.||-+|--+.....        +.++|+|..|..
T Consensus        88 ~cDvsyh~yc~~P~~~~v--------~sg~~~ckk~~~  117 (694)
T KOG4443|consen   88 RCDVSYHCYCQKPPNDKV--------PSGPWLCKKCTR  117 (694)
T ss_pred             cccccccccccCCccccc--------cCcccccHHHHh
Confidence            999999999977765432        789999988865

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.65  E-value=1.7e-05  Score=65.93  Aligned_cols=50  Identities=36%  Similarity=0.874  Sum_probs=39.8

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      +|.||.+  ..+.+.+|+|+.|+..||..|+++......      .+.+.|+|..|..
T Consensus         1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~------~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEE------IPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHS------HHSSSBSSHHHHH
T ss_pred             eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhcc------CCCCcEECcCCcC
Confidence            4889996  567899999999999999999999765221      1334899999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>TIGR00442 hisS histidyl-tRNA synthetase

Probab=97.49  E-value=0.00042  Score=81.63  Aligned_cols=98  Identities=20%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|....+++-+++.. .++.++|+|+|+++++||+|....|       |.+||.+.+...+..+. ..+
T Consensus        65 ~~d~~g~~l~LRpD~T~~iaR~~~~~-~~~~~~p~r~~y~g~vfR~e~~~~g-------r~ref~Q~g~eiig~~~-~~~  135 (397)
T TIGR00442        65 FKDKGGRSLTLRPEGTAPVARAVIEN-KLLLPKPFKLYYIGPMFRYERPQKG-------RYRQFHQFGVEVIGSDS-PLA  135 (397)
T ss_pred             EECCCCCEEeecCCCcHHHHHHHHhc-ccccCCCeEEEEEcCeecCCCCCCC-------cccceEEcCeeeeCCCC-HHH
Confidence            46888999999999999999998754 3467899999999999999974333       89999999999998776 334


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccC
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSG  122 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sg  122 (1083)
                      +   .+++....++|+.||++=..+.+...
T Consensus       136 d---~E~i~l~~e~l~~lg~~~~~i~i~~~  162 (397)
T TIGR00442       136 D---AEIIALAAEILKELGIKDFTLEINSL  162 (397)
T ss_pred             H---HHHHHHHHHHHHHcCCCceEEEecCc
Confidence            3   46888899999999997333444333

This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.

>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed

Probab=97.44  E-value=0.00037  Score=81.74  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=69.4

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ++.++|+|+-...++.+++.. ..+.++|+|++.++++||.|....       -+.+||.+.+...+..      ...|+
T Consensus       255 deel~LRpsLtPsLlr~la~n-~k~~~~P~RIFEIG~VFR~E~~g~-------~hlrEf~Ql~~~iiGs------~~~f~  320 (417)
T PRK09537        255 DKNFCLRPMLAPGLYNYLRKL-DRILPDPIKIFEIGPCYRKESDGK-------EHLEEFTMVNFCQMGS------GCTRE  320 (417)
T ss_pred             CCceEehhhhHHHHHHHHHhh-hhcccCCeeEEEEeceEecCCCCC-------CCcceEEEEEEEEeCC------chHHH
Confidence            457899999999988877632 345678999999999999997322       2789999888876632      23678


Q ss_pred             HHHHHHHHHHHHcCCceEEE
Q psy11602         98 EMIQNSEEFYADLGIAYRVV  117 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv  117 (1083)
                      ++....+.+|+.|||+|.++
T Consensus       321 dL~~lleeLL~~LGI~f~i~  340 (417)
T PRK09537        321 NLENIIDDFLKHLGIDYEII  340 (417)
T ss_pred             HHHHHHHHHHHHCCCCcEEe
Confidence            89999999999999999888

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain

Probab=97.42  E-value=3.7e-05  Score=85.23  Aligned_cols=104  Identities=23%  Similarity=0.305  Sum_probs=93.2

Q ss_pred             hhh-hhhcccccccccccC-cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCC---cEEEEeccCCCc
Q psy11602        287 MLD-EMIQNSEEFYADLDT-RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI---AYRVVNIVSGAL  361 (1083)
Q Consensus       287 ~~~-~~~~~~~~~~~~~~t-rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~l---pyRvv~~~~~dl  361 (1083)
                      +|| ++++...+||..... .||.|+++|+..++-.|+.|+  ++.+.++.++.....||+.+|+   ..|+....+.++
T Consensus       105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~--~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~  182 (254)
T cd00774         105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPE--KSHPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEEL  182 (254)
T ss_pred             CCCchhhhhchhhccccCcccceeeeccchhhheeeeECCC--CchHHHHHHHHHHHHHHHHcCCCccceEEEecccHhh
Confidence            788 889999999996544 699999999999999999995  7889999999999999999994   479999999999


Q ss_pred             chhhhceeeEEEeeCCCCcEEeeecccCccccc
Q psy11602        362 NHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQ  394 (1083)
Q Consensus       362 ~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~q  394 (1083)
                      +.-|...+|+|+.+|  ..|.|+..+++-+|+.
T Consensus       183 a~ya~~~~d~~~~~~--~~w~e~~Gi~~~~~~~  213 (254)
T cd00774         183 AHYANETLDYFYAFP--HGFLELEGIANRGDRF  213 (254)
T ss_pred             hhhhHHHHHHHHHHh--hhHHHHcCCCcchhHH
Confidence            999999999999997  4688999999888864

GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly

>smart00249 PHD PHD zinc finger

Probab=97.41  E-value=0.00011  Score=59.04  Aligned_cols=41  Identities=37%  Similarity=0.874  Sum_probs=35.3

Q ss_pred             ccccccCCCCCCcceecCccCCCccccCCCCCCC-CCCCCCc
Q psy11602       1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLL-RMPKKTK 1079 (1083)
Q Consensus      1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~-~~P~~~~ 1079 (1083)
                      .|.+|++..+...++.||.|+++||..|+.++.. ..+...|
T Consensus         1 ~C~~C~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~   42 (47)
T smart00249        1 YCSVCGKPDDGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKW   42 (47)
T ss_pred             CcccCCCcCCCCCEEECCCCCchhhhhhCCCcccCCCCCCCE
Confidence            3789999888999999999999999999999988 5555543

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG4323|consensus

Probab=97.41  E-value=6.1e-05  Score=88.21  Aligned_cols=110  Identities=25%  Similarity=0.359  Sum_probs=76.1

Q ss_pred             eeeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecc---------------------------
Q psy11602        631 LVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLE---------------------------  683 (1083)
Q Consensus       631 ~~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~---------------------------  683 (1083)
                      ..|++|.........++.+|..|+..+|-.|-      +.-. ..+..|..-+                           
T Consensus        84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~------i~~~-~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~  156 (464)
T KOG4323|consen   84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCN------IPRF-PSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPE  156 (464)
T ss_pred             cCCcccccccccCchhhhhhhhhccCcccccC------ccCc-CcCCccccccccccccccccccccccccccccccCcc
Confidence            46999988888777789999999999987661      0000 0001111110                           


Q ss_pred             -----cccCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        684 -----DFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       684 -----d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                           |.. .-.++.|+||..+-+...|.||+|++|.--|||.|+.+...+..    ...+...|+|+.|.+..
T Consensus       157 ~~l~wD~~-~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l----~~D~~~~w~C~~C~~~~  225 (464)
T KOG4323|consen  157 ASLDWDSG-HKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDEL----AGDPFYEWFCDVCNRGP  225 (464)
T ss_pred             cccccCcc-ccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhh----ccCccceEeehhhccch
Confidence                 100 11245699999888888999999999999999999988654322    22267889999999875

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=97.40  E-value=0.0015  Score=78.10  Aligned_cols=149  Identities=18%  Similarity=0.274  Sum_probs=101.5

Q ss_pred             CCeeEecCChHHHHHHHhcccCCC----CCC-CceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPE----ASL-PIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~----~~L-Plklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      ....+--||-++...-+.......    ..+ |+|+++++++||+|.-.++       |.+||..+|...+...-     
T Consensus       325 a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Dat-------H~~eFhQ~Eg~vi~~~~-----  392 (494)
T PTZ00326        325 ARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT-------HLAEFHQVEGFVIDRNL-----  392 (494)
T ss_pred             hccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCC-------cCceeEEEEEEEEeCCC-----
Confidence            334455566665555333322211    223 9999999999999996665       89999999999998876     


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccc
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY  173 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n  173 (1083)
                       .+.+++.....||++||+. .+--.|+  -++--.-.+.++++.|..++|+||+.|-....-.-+.+++   ..+..+-
T Consensus       393 -s~~~L~~~l~~f~~~lG~~-~~RfrP~--yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi---~~~~~~~  465 (494)
T PTZ00326        393 -TLGDLIGTIREFFRRIGIT-KLRFKPA--FNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGF---PEDVTVI  465 (494)
T ss_pred             -CHHHHHHHHHHHHHhcCCC-ceEEecC--CCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCC---CCcceEE
Confidence             3567888899999999873 2222233  2333334567788999888899999887766444455665   2222367


Q ss_pred             cccccchhheehe
Q psy11602        174 ATACATTRVICAI  186 (1083)
Q Consensus       174 ~tg~a~~Rli~Al  186 (1083)
                      +.|+++.|+.-..
T Consensus       466 A~GlGleRlaMi~  478 (494)
T PTZ00326        466 AWGLSLERPTMIK  478 (494)
T ss_pred             EEEecHHHHHHHH
Confidence            8899999986443

>KOG1637|consensus

Probab=97.39  E-value=0.0001  Score=85.21  Aligned_cols=179  Identities=20%  Similarity=0.298  Sum_probs=121.6

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      +++.|-|-.--.-.=||+..-+||++||+|+...+.--|+|+-   -.--||.|+|.|..-|+..|+++++  -++.+..
T Consensus       246 e~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~S---GaLsGLTRvRrFqQDDaHIFCt~~Q--i~~Eik~  320 (560)
T KOG1637|consen  246 EEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEAS---GALSGLTRVRRFQQDDAHIFCTPDQ--VKEEIKG  320 (560)
T ss_pred             hhhccCccCCCccccccccCCccHhhCCccccCcceeeecccc---ccccccceeeeecccCceEEecCcc--HHHHHHH
Confidence            3466666666666668888899999999999999999999994   3457999999999999999999986  7888888


Q ss_pred             HHHHHHHHHHHcCCceEEEEe--ccCCCCcc---cceeEeE----------EEEecCCCce----------eEEEEcCCC
Q psy11602         99 MIQNSEEFYADLGIAYRVVNI--VSGALNHA---AAKKLDL----------EAWFPGSGAF----------RELVSCSNC  153 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~--~sgdlg~~---as~~~di----------E~~~P~~~~~----------~ev~s~s~c  153 (1083)
                      .++--+.+|.-+|..|....-  |.+=+|.-   ...+.++          +..-|+++.|          .-+..-++|
T Consensus       321 ~l~fl~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQc  400 (560)
T KOG1637|consen  321 CLDFLDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQC  400 (560)
T ss_pred             HHHHHHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccce
Confidence            888888888888877765332  22222210   0000000          1122233222          111223334


Q ss_pred             ----chhh-hhcccceeccCCCc-------cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        154 ----LDYQ-SRRLLVRYGQTKQK-------IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       154 ----gdyq-s~rl~i~y~~~~~~-------~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                          .||| -.|++..|.+.++.       .-+.-.++.|+++.|+|+|..    .||-.|.|.+
T Consensus       401 aTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~g----kwPFWlSPRq  461 (560)
T KOG1637|consen  401 ATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYGG----KWPFWLSPRQ  461 (560)
T ss_pred             eeeeecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHhCC----CCCeeeccce
Confidence                4555 57899999986654       222334669999999998765    5787788887

>KOG4323|consensus

Probab=97.35  E-value=9.5e-05  Score=86.61  Aligned_cols=127  Identities=22%  Similarity=0.277  Sum_probs=92.2

Q ss_pred             HHHHhhhhcccceecccccC---CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcc
Q psy11602        668 AIKFLIRYLLFWFQLEDFSK---FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWF  744 (1083)
Q Consensus       668 ~i~~~~~~~~~W~~~~d~~~---~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~  744 (1083)
                      .+.|.+.+    +.|++++.   ..+...|.||........|.+++|++|+.++||.|..+...          ..+.|.
T Consensus        61 ~~~f~d~s----~~~~~~s~as~~~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~----------~~~~~~  126 (464)
T KOG4323|consen   61 LTSFEDDS----VLWDDISKASLPSSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFP----------SLDIGE  126 (464)
T ss_pred             cccccccc----ccccccccccCCccccCCcccccccccCchhhhhhhhhccCcccccCccCcC----------cCCccc
Confidence            56666666    77777764   67889999999988888999999999999999999877654          356788


Q ss_pred             cccccCCC--------------------------------CCCceeecCCCCccccccccccccccchhhhhhhhccccc
Q psy11602        745 CESCRAGI--------------------------------AEPTCELCPNFGENHLRGLFENIKNGHAQRDRMRYHACHL  792 (1083)
Q Consensus       745 Cd~C~~~~--------------------------------~~~~C~LCp~~g~~~~~~~~~~~k~~~~~~~~~~~~~~~~  792 (1083)
                      +..|....                                .+.+|++|.+++-.                          
T Consensus       127 ~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~~~~n~qc~vC~~g~~~--------------------------  180 (464)
T KOG4323|consen  127 STECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSGHKVNLQCSVCYCGGPG--------------------------  180 (464)
T ss_pred             cccccccccccccccccccccccccccCcccccccCccccccceeeeeecCCcC--------------------------
Confidence            88887642                                23568888874311                          


Q ss_pred             cccCCCCCCCCCCcceeccCCceeecccccccCC-cEEecccccCceeeecCccCCcCCCccccCCC
Q psy11602        793 RDSRDSSDGDRGGIFKETDVGKWVHLVCALYIPG-VAFGEVDRLSNVTLFEMPYSRWGAKSCALCPD  858 (1083)
Q Consensus       793 ~~~~~~~~~~~~galK~t~~~~WvHv~CAlw~pe-v~f~~~~~~~pv~~~~ip~~r~~~~~C~iC~~  858 (1083)
                             .  ..-++.+..+++|.|-.|....-. ..++|               ++....|..|..
T Consensus       181 -------~--~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D---------------~~~~w~C~~C~~  223 (464)
T KOG4323|consen  181 -------A--GNRMLQCDKCRQWYHQACHQPLIKDELAGD---------------PFYEWFCDVCNR  223 (464)
T ss_pred             -------c--cceeeeecccccHHHHHhccCCCCHhhccC---------------ccceEeehhhcc
Confidence                   0  113778888999999999976421 22232               333457999986

>PRK00037 hisS histidyl-tRNA synthetase; Reviewed

Probab=97.33  E-value=0.00056  Score=80.94  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|..-.+++-+++....    +|+|+|+++++||+|....|       |.|||.+.+...|..+. ..+
T Consensus        69 ~~d~~g~~l~LRpd~T~~~ar~~~~~~~----~p~r~~~~g~vfR~e~~~~g-------r~ref~Q~g~ei~g~~~-~~~  136 (412)
T PRK00037         69 FQDKGGRSLTLRPEGTAPVVRAVIEHKL----QPFKLYYIGPMFRYERPQKG-------RYRQFHQFGVEVIGSDS-PLA  136 (412)
T ss_pred             EEcCCCCEEEecCCCcHHHHHHHHhCCC----CCeEEEEEcCccccCCCCCC-------cccceEEcCeeeeCCCC-cch
Confidence            3678899999999999999988876422    99999999999999974433       89999999999998776 333


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEE
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVV  117 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv  117 (1083)
                      +   .|++....++|+.||++...+
T Consensus       137 d---~E~i~~~~~~l~~lg~~~~~~  158 (412)
T PRK00037        137 D---AEVIALAADILKALGLKGLKL  158 (412)
T ss_pred             h---HHHHHHHHHHHHHcCCCceee
Confidence            3   347888899999999986555

>KOG1512|consensus

Probab=97.33  E-value=8.6e-05  Score=80.53  Aligned_cols=48  Identities=19%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcC
Q psy11602       1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
                      -|+|..|+.|.||+++..++.++.||.||.+||++|+-  |..+|.|+|-
T Consensus       308 ~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WI  355 (381)
T KOG1512|consen  308 FWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWI  355 (381)
T ss_pred             chhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccch
Confidence            46779999999999999999999999999999999985  8999999943

>smart00249 PHD PHD zinc finger

Probab=97.29  E-value=0.00022  Score=57.18  Aligned_cols=47  Identities=30%  Similarity=0.765  Sum_probs=38.1

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccc
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESC  748 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C  748 (1083)
                      .|.+|....  +++.+|.|+.|+..+|..|+++.....       .+...|+|..|
T Consensus         1 ~C~~C~~~~--~~~~~i~C~~C~~~~H~~C~~~~~~~~-------~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPD--DGGELLQCDGCDRWYHQTCLGPPLLEE-------EPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcC--CCCCEEECCCCCchhhhhhCCCcccCC-------CCCCCEECcCC
Confidence            478998654  678999999999999999999876511       25678999887

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>CHL00201 syh histidine-tRNA synthetase; Provisional

Probab=97.21  E-value=0.0015  Score=77.90  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=78.9

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .|+.++.++|+|=--.+++-++...-.+++.+|+|++.++++||.|....|       |.|||+..+.=.|..+. ..|+
T Consensus        70 ~d~~g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~G-------R~Ref~Q~g~EiiG~~~-~~aD  141 (430)
T CHL00201         70 TDRSNRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSG-------RQRQFHQLGIEFIGSID-ARAD  141 (430)
T ss_pred             EcCCCCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCC-------ccceeEEeceEEECCCC-hhhH
Confidence            477788999999999999999877667788999999999999999986555       99999998888887766 3454


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEec
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIV  120 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~  120 (1083)
                         .|++....++|+.|||+=..+.+.
T Consensus       142 ---~Evi~l~~~~l~~lGl~~~~i~l~  165 (430)
T CHL00201        142 ---TEVIHLAMQIFNELQVKNLILDIN  165 (430)
T ss_pred             ---HHHHHHHHHHHHHcCCCceEEEEC
Confidence               568899999999999973334443

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.00053  Score=81.10  Aligned_cols=89  Identities=29%  Similarity=0.473  Sum_probs=75.6

Q ss_pred             cCceeEEEeeeEEEEEEeCCCc-------------------hhHHH----------H-----HHHHHHHHHHHHHHhCCc
Q psy11602        305 RGIFRVHQFEKVEQFVLTSPHD-------------------DESWK----------T-----LDEMIQNSEEFYADLGIA  350 (1083)
Q Consensus       305 rGl~Rvhqf~kvE~f~~~~~~~-------------------~~s~~----------~-----~e~~~~~~e~~~~~L~lp  350 (1083)
                      .||||+++|+..|+=.|++|+.                   +...+          +     +--.+..+..|+..||||
T Consensus       205 ~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~  284 (558)
T COG0423         205 NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGID  284 (558)
T ss_pred             cceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCC
Confidence            5999999999999999999986                   32222          2     335677888999999998


Q ss_pred             ---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccc
Q psy11602        351 ---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQ  394 (1083)
Q Consensus       351 ---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~q  394 (1083)
                         .|.-.-.+.+|..=|..++|+|+.+|.-| |+|++-++|=+||-
T Consensus       285 ~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g-WiE~~GiAdRtdYD  330 (558)
T COG0423         285 PEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG-WIELVGIADRTDYD  330 (558)
T ss_pred             HHHhhhhhcChHHHhhhhhcceeEEEecCCCc-eEEEEEeecccccc
Confidence               77778889999999999999999999444 99999999999974

>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6

Probab=97.03  E-value=0.0074  Score=66.89  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=100.2

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      .+..|-.||-.+...-..   ...+..|+|+..++.+||.|.-    +..   ...+|.++|...++..-      .+..
T Consensus        78 ~~~~vLRThts~~~~~~l---~~~~~~p~kif~iG~VyR~D~~----D~t---h~~~f~Qleg~~~~~~~------~f~~  141 (247)
T PF01409_consen   78 EDYSVLRTHTSPGQLRTL---NKHRPPPIKIFEIGKVYRRDEI----DAT---HLPEFHQLEGLVVDKNV------TFED  141 (247)
T ss_dssp             CSSEEE-SSTHHHHHHHH---TTTSHSSEEEEEEEEEESSSCS----BSS---BESEEEEEEEEEEETTE-------HHH
T ss_pred             chhhhhhhhhhHHHHHHH---HHhcCCCeEEEecCceEecCCc----ccc---cCccceeEeeEEEeccc------chhH
Confidence            344555677666544333   6777899999999999999983    222   56799999999887654      6788


Q ss_pred             HHHHHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccc
Q psy11602         99 MIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATAC  177 (1083)
Q Consensus        99 ~~~~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~  177 (1083)
                      +....+.+++.| |....+--.|+---+---+.+.||.......++|+||+-|--.--...+..+|   +.+...-+.|+
T Consensus       142 Lk~~l~~l~~~lfG~~~~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gi---d~~~~~~A~G~  218 (247)
T PF01409_consen  142 LKGTLEELLKELFGIDVKVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGI---DEEYPGFAFGL  218 (247)
T ss_dssp             HHHHHHHHHHHHHTTTEEEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT-----TTSEEEEEEE
T ss_pred             HHHHHHHHHHHHhhcccceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCc---CccceEEEecC
Confidence            999999999999 98744433444333444455556655557788999999876554444555555   22223677899


Q ss_pred             cchhheehee
Q psy11602        178 ATTRVICAIL  187 (1083)
Q Consensus       178 a~~Rli~All  187 (1083)
                      ++.|++-...
T Consensus       219 GleRlam~~~  228 (247)
T PF01409_consen  219 GLERLAMLKY  228 (247)
T ss_dssp             EHHHHHHHHH
T ss_pred             CHHHHHHHHc
Confidence            9999865443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=96.89  E-value=0.0081  Score=71.81  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=107.3

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      =|.......|--||-+++..-+.........-|++++.++++||+|+-.+-       ...||..+|.+.++..-     
T Consensus       310 W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDat-------H~~eFhQ~EG~vvd~~~-----  377 (492)
T PLN02853        310 WKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRT-------HLAEFHQVEGLVCDRGL-----  377 (492)
T ss_pred             cccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcc-------cCccceeEEEEEEeCCC-----
Confidence            344444557778999888775554433223469999999999999983221       67899999999998765     


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccc
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY  173 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n  173 (1083)
                       .+..++...+.||.+||. -.+--.|+-  ++--.-.+.+++|.|..++|+||+-|--.-..--+.++|   ..+..+-
T Consensus       378 -t~~~L~g~l~~f~~~lg~-~~~RfrP~y--fPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi---~~~~~~~  450 (492)
T PLN02853        378 -TLGDLIGVLEDFFSRLGM-TKLRFKPAY--NPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGL---PEDVNVI  450 (492)
T ss_pred             -CHHHHHHHHHHHHHHcCC-ceEEEecCC--CCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCC---CCcceEE
Confidence             667788899999999987 334444543  333333455566889888899998876655555555555   2222267


Q ss_pred             cccccchhheeheec
Q psy11602        174 ATACATTRVICAILE  188 (1083)
Q Consensus       174 ~tg~a~~Rli~Alle  188 (1083)
                      +.|+++.|+.-....
T Consensus       451 A~GlGleRlaMl~yg  465 (492)
T PLN02853        451 AWGLSLERPTMILYG  465 (492)
T ss_pred             EEEecHHHHHHHHhC
Confidence            889999998654433

>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.0023  Score=75.80  Aligned_cols=98  Identities=19%  Similarity=0.166  Sum_probs=76.9

Q ss_pred             CCCCCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCC
Q psy11602          9 GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPH   88 (1083)
Q Consensus         9 ~~~~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~   88 (1083)
                      .--+.+|+.++.+.|+|=--.|++-++........ +|+|+|.++++||+|....|       |.|||...+.=.+-.+.
T Consensus        65 emY~F~Dkggr~laLRpe~Tapv~R~~~en~~~~~-~p~k~yy~g~vfRyErPQ~G-------R~RqF~Q~g~E~iG~~~  136 (429)
T COG0124          65 EMYTFKDKGGRSLALRPELTAPVARAVAENKLDLP-KPLKLYYFGPVFRYERPQKG-------RYRQFYQFGVEVIGSDS  136 (429)
T ss_pred             ceEEEEeCCCCEEEecccCcHHHHHHHHhcccccc-CCeeEEEecceecCCCCCCC-------CceeeEEcCeEEeCCCC
Confidence            33467899999999999999999999987766555 89999999999999998877       88999876554444433


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Q psy11602         89 DDESWKMLDEMIQNSEEFYADLGIAYRVVN  118 (1083)
Q Consensus        89 ~e~s~~~~~~~~~~y~~if~~LgLpyrvv~  118 (1083)
                       ..++   .|++....++|+.|||.-..++
T Consensus       137 -~~~D---AEvi~l~~~~l~~lGi~~~~l~  162 (429)
T COG0124         137 -PDAD---AEVIALAVEILEALGIGGFTLE  162 (429)
T ss_pred             -cccC---HHHHHHHHHHHHHcCCCcEEEE
Confidence             2222   4688889999999999843333

>PRK12420 histidyl-tRNA synthetase; Provisional

Probab=96.85  E-value=0.0025  Score=75.88  Aligned_cols=91  Identities=16%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|-.-.+++-+++..  ....+|+|+|.++++||.|....|       |.|||.....=.|..+. ..+
T Consensus        68 ~~D~~g~~l~LRpD~T~~iaR~va~~--~~~~~p~r~~y~g~vfR~~~~~~g-------r~rE~~Q~g~EiiG~~~-~~a  137 (423)
T PRK12420         68 LTDQGKRDLALRYDLTIPFAKVVAMN--PNIRLPFKRYEIGKVFRDGPIKQG-------RFREFIQCDVDIVGVES-VMA  137 (423)
T ss_pred             EecCCCceecccccccHHHHHHHHhC--cCCCCCeeEEEEcceECCCCCCCC-------ccceeEECCeeeECCCC-Ccc
Confidence            56888999999999999999998865  234789999999999999875444       78999877666665544 233


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEE
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRV  116 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrv  116 (1083)
                      +   .|++....++|+.||+.|.+
T Consensus       138 d---aEvi~la~~~l~~lg~~~~i  158 (423)
T PRK12420        138 E---AELMSMAFELFRRLNLEVTI  158 (423)
T ss_pred             c---HHHHHHHHHHHHHCCCCEEE
Confidence            3   67888888999999997643

>PLN02530 histidine-tRNA ligase

Probab=96.76  E-value=0.0038  Score=75.75  Aligned_cols=89  Identities=18%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|---.+++-+++....+. .+|+|+|.++++||+|....|       |.|||.....=.|..+. ..|
T Consensus       132 f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e~~q~g-------r~REf~Q~giEiiG~~~-~~a  202 (487)
T PLN02530        132 FEDKGGRRVALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYERMTRG-------RRREHYQWNMDIIGVPG-VEA  202 (487)
T ss_pred             EECCCCCEEecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCcCCCCC-------CccceEEcCeeEeCCCC-cch
Confidence            468899999999999999999888754443 699999999999999986555       78999887666666555 233


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      +   .|++....++|+.|||+
T Consensus       203 D---aEvi~l~~~~l~~lgl~  220 (487)
T PLN02530        203 E---AELLAAIVTFFKRVGIT  220 (487)
T ss_pred             h---HHHHHHHHHHHHHcCCC
Confidence            3   46778888899999996

>KOG4299|consensus

Probab=96.63  E-value=0.00075  Score=80.93  Aligned_cols=45  Identities=27%  Similarity=0.571  Sum_probs=40.4

Q ss_pred             ccccccccCCCCCCcceecCccCCCccccCCCCC--CCCCCCCCcCC
Q psy11602       1037 SHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPP--LLRMPKKTKLM 1081 (1083)
Q Consensus      1037 ~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Pp--l~~~P~~~~~~ 1081 (1083)
                      ...|..|.+.+.-..+++||+|.+.||+.||+||  .+.+|.+.|+|
T Consensus       253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C  299 (613)
T KOG4299|consen  253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFC  299 (613)
T ss_pred             HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCcccc
Confidence            3479999999988888999999999999999999  78999998654

>KOG0825|consensus

Probab=96.60  E-value=0.00096  Score=80.73  Aligned_cols=54  Identities=24%  Similarity=0.587  Sum_probs=44.5

Q ss_pred             CCCCccccccCCCCCCCCCcEEEcccCCcc-cccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        688 FSKILVCCVCLGERSDDVNEIVECDSCGVT-VHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~-VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..+...|.||...  +..+-||.||.|+.+ ||.+|.-+...+.        |-+.|+|+-|...
T Consensus       212 ~~E~~~C~IC~~~--DpEdVLLLCDsCN~~~YH~YCLDPdl~ei--------P~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  212 SQEEVKCDICTVH--DPEDVLLLCDSCNKVYYHVYCLDPDLSES--------PVNEWYCTNCSLL  266 (1134)
T ss_pred             ccccccceeeccC--ChHHhheeecccccceeeccccCcccccc--------cccceecCcchhh
Confidence            3566799999954  557899999999999 9999998876433        7899999999753

>TIGR02367 PylS pyrrolysyl-tRNA synthetase

Probab=96.58  E-value=0.0069  Score=71.36  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=69.1

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ++.++|+|+---+|+.+++.. .....+|+|++.++.+||.|....+       |.+||.+.+...+....      .|.
T Consensus       291 ee~lvLRPdLTPsLaR~La~N-~~~l~~PqKIFEIGkVFR~E~~~~t-------hlREF~QL~~eIaG~~a------tfa  356 (453)
T TIGR02367       291 DKNFCLRPMLAPNLYNYLRKL-DRALPDPIKIFEIGPCYRKESDGKE-------HLEEFTMLNFCQMGSGC------TRE  356 (453)
T ss_pred             cCceEecccCHHHHHHHHHHh-hhhccCCeeEEEEcCeEecCCCCCC-------CcCeEEEEEEEEECCCC------CHH
Confidence            457899999877777766542 1234789999999999999986544       79999999999887665      456


Q ss_pred             HHHHHHHHHHHHcCCceEEEE
Q psy11602         98 EMIQNSEEFYADLGIAYRVVN  118 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~  118 (1083)
                      ++......+|+.||+.|.+.+
T Consensus       357 DlealL~e~Lr~LGIdfeitE  377 (453)
T TIGR02367       357 NLEAIIKDFLDHLEIDFEIVG  377 (453)
T ss_pred             HHHHHHHHHHHHCCCceEEeC
Confidence            677788999999999998863

PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.

>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase

Probab=96.27  E-value=0.031  Score=66.15  Aligned_cols=143  Identities=13%  Similarity=0.198  Sum_probs=96.7

Q ss_pred             eEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602         22 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ  101 (1083)
Q Consensus        22 ~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~  101 (1083)
                      .|.-||=.+..-.....+.....+|+|++.++.|||.|..   -+.   -+.++|..++...++..-      .|.++..
T Consensus       183 ~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~---~Da---THl~eFhQlEGLVVdedV------Sf~DLKg  250 (533)
T TIGR00470       183 LTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQR---EDR---SHLMTYHSASCVVVDEEV------SVDDGKA  250 (533)
T ss_pred             cccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCC---CCC---ccCceeeeEEEEEECCCC------CHHHHHH
Confidence            3455666664434444334466899999999999999952   111   157899999988888776      7899999


Q ss_pred             HHHHHHHHcCCceEEEEeccC----CCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccc
Q psy11602        102 NSEEFYADLGIAYRVVNIVSG----ALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATAC  177 (1083)
Q Consensus       102 ~y~~if~~LgLpyrvv~~~sg----dlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~  177 (1083)
                      ..+.|+++||.. .+--.|+.    --++.-.  ..|.++.|..++|.||+.|.-.--..=+.++|.+.     +-+.|+
T Consensus       251 vLe~LLr~LG~~-~vRFRPsekrskyYFPFTE--aEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~P-----V~AFGI  322 (533)
T TIGR00470       251 VAEGLLAQFGFT-KFRFRPDEKKSKYYIPETQ--TEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP-----VMNLGL  322 (533)
T ss_pred             HHHHHHHHhCCc-eEEeccCcCCCCCcCCCce--EEEEEEccCCCceEEEEeccccCHHHHHHcCCCCc-----eEEEEe
Confidence            999999999963 12222331    1333222  56667778788899999877665444455555321     457899


Q ss_pred             cchhhee
Q psy11602        178 ATTRVIC  184 (1083)
Q Consensus       178 a~~Rli~  184 (1083)
                      ++.|+.-
T Consensus       323 GVERlAM  329 (533)
T TIGR00470       323 GVERLAM  329 (533)
T ss_pred             cHHHHHH
Confidence            9999854

This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.

>KOG1637|consensus

Probab=96.16  E-value=0.015  Score=67.78  Aligned_cols=244  Identities=18%  Similarity=0.251  Sum_probs=144.8

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-----
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-----  269 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-----  269 (1083)
                      |.+|=..|..|+-..+. ..||.+|+.|-+.+.+.-++-                ++.-.+.+   +||++....     
T Consensus       191 G~~iyN~Lv~fir~ey~-~rGf~EVitPniy~~~LWe~S----------------GHwqnY~e---nmF~~e~eke~~~L  250 (560)
T KOG1637|consen  191 GTRIYNTLVDFIRAEYR-KRGFTEVITPNIYNKKLWETS----------------GHWQNYSE---NMFKFEVEKEEFAL  250 (560)
T ss_pred             cchHHHHHHHHHHHHHH-hcCCceecCcchhhhhhhhhc----------------cchhhhhh---hceeeeechhhhcc
Confidence            34444677778777775 789999999999994433322                23333333   455544311     


Q ss_pred             ---ceEEEEeeCCCCCcchhhhh-hhhcccccccc--cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        270 ---KVEQFVLTSPHDDESWKMLD-EMIQNSEEFYA--DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       270 ---~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~--~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                         .--...+.--|.+-||+.|| ++-...-.-|.  .-...||-||+.|..=---.+|+|+  +-+++.+-.+.-.+.+
T Consensus       251 KPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~--Qi~~Eik~~l~fl~~v  328 (560)
T KOG1637|consen  251 KPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPD--QVKEEIKGCLDFLDYV  328 (560)
T ss_pred             CccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCc--cHHHHHHHHHHHHHHH
Confidence               12233444556677888888 53332222222  2334799999999887778888884  5677777777777888


Q ss_pred             HHHhCCcEEEEecc----------------------------CCCcch--hhhc--eeeEEEeeCCCCcEEeeecccCcc
Q psy11602        344 YADLGIAYRVVNIV----------------------------SGALNH--AAAK--KLDLEAWFPGSGAFRELVSCSNCL  391 (1083)
Q Consensus       344 ~~~L~lpyRvv~~~----------------------------~~dl~~--~a~~--~~DiE~w~P~~~~y~Ev~S~sn~~  391 (1083)
                      |.-+|.-|.+..--                            ++.|++  +|.+  |+||=+ .-..+++..+.|+  -.
T Consensus       329 Y~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l-~Dal~r~hQcaTI--QL  405 (560)
T KOG1637|consen  329 YGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITL-DDALGRKHQCATI--QL  405 (560)
T ss_pred             HHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEh-hhhcCcccceeee--ee
Confidence            88888777765432                            111111  2222  344433 1223566666666  48


Q ss_pred             cccc-cccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCC
Q psy11602        392 AYQS-RRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP  470 (1083)
Q Consensus       392 d~qa-rrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p  470 (1083)
                      |||. .|.++.|.+.++.-...--+|-  +..=++.|.++.|+|+|..    ++|=.|.|....       .|| |..+|
T Consensus       406 DFqLP~rFdL~y~~~~g~~erPVmIHR--AIlGSvERmiaiL~E~~~g----kwPFWlSPRq~~-------vIp-Vse~~  471 (560)
T KOG1637|consen  406 DFQLPIRFDLEYETEDGDLERPVMIHR--AILGSVERMIAILLESYGG----KWPFWLSPRQAV-------VIP-VSEGP  471 (560)
T ss_pred             cccChhhcCceeecccccccchhhHHH--HHhhhHHHHHHHHHHHhCC----CCCeeeccceEE-------EEE-CCCcc
Confidence            9997 5888889875321111122331  2333689999999998863    677777777542       233 34566


Q ss_pred             CChhhHH
Q psy11602        471 IDEEETK  477 (1083)
Q Consensus       471 ~D~e~~~  477 (1083)
                      -+|-.+.
T Consensus       472 ~~ya~~V  478 (560)
T KOG1637|consen  472 LDYATSV  478 (560)
T ss_pred             hhHHHHH
Confidence            6665443

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=96.15  E-value=0.027  Score=68.46  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      .+|..++.++|+|--=.+++.++..    ....|+++|.++++||.|....+       |.+||...+...+..+-    
T Consensus       321 ~~~~~~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d~~-------~l~Ef~ql~~~i~G~~~----  385 (489)
T PRK04172        321 WDEDIAKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTIDAT-------HLPEFYQLEGIVMGEDV----  385 (489)
T ss_pred             cchhhhhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCCcc-------cCCchheEEEEEEeCCC----
Confidence            3455667889998777777777665    44789999999999999874322       34799999988887643    


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc-eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA-YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK  171 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp-yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~  171 (1083)
                        .|.+++...+.+|+.||++ ++..  ++..-+.  .....++++.++. +|.+|+.+...---..++++|..     .
T Consensus       386 --~f~elkg~l~~ll~~lGi~~~~~~--~~~~p~~--~P~~~~~i~~~g~-~w~eiG~~G~l~Pevl~~~gi~~-----~  453 (489)
T PRK04172        386 --SFRDLLGILKEFYKRLGFEEVKFR--PAYFPFT--EPSVEVEVYHEGL-GWVELGGAGIFRPEVLEPLGIDV-----P  453 (489)
T ss_pred             --CHHHHHHHHHHHHHHhCCceEEEc--CCcCCCC--CCeEEEEEEECCC-CeEEEEeccccCHHHHHHCCCCC-----c
Confidence              3688999999999999995 4432  2211111  2223445555543 48889876655555566666632     1


Q ss_pred             cccccccchhheehe
Q psy11602        172 IYATACATTRVICAI  186 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Al  186 (1083)
                      +...++.+.|++...
T Consensus       454 v~~~el~le~l~m~~  468 (489)
T PRK04172        454 VLAWGLGIERLAMLR  468 (489)
T ss_pred             eEEEEEcHHHHHHHH
Confidence            556667777765433

>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]

Probab=95.76  E-value=0.1  Score=59.94  Aligned_cols=142  Identities=16%  Similarity=0.219  Sum_probs=94.9

Q ss_pred             eeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602         21 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI  100 (1083)
Q Consensus        21 ~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~  100 (1083)
                      ..|.-||-.++..-+...-...   |+|+..++.+||.|.-.       --...||..+|...++..-      .+..+.
T Consensus       170 ~~lLRTHTs~vq~R~l~~~~~~---P~k~~~~grvyR~D~~D-------aTHs~~FhQiEGlvvd~~~------s~~~Lk  233 (335)
T COG0016         170 KLLLRTHTSPVQARTLAENAKI---PIKIFSPGRVYRNDTVD-------ATHSPEFHQIEGLVVDKNI------SFADLK  233 (335)
T ss_pred             ceeecccCcHhhHHHHHhCCCC---CceEecccceecCCCCC-------cccchheeeeEEEEEeCCc------cHHHHH
Confidence            4566688888877665543333   99999999999999522       2268899999999998887      466777


Q ss_pred             HHHHHHHHHcC-CceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccc--cccc
Q psy11602        101 QNSEEFYADLG-IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY--ATAC  177 (1083)
Q Consensus       101 ~~y~~if~~Lg-Lpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n--~tg~  177 (1083)
                      ...+.|++.++ ....+--.|+-  ++--.-.+.+++|.+..++|+||+-|--.-..--++++|   +.+. +.  +.|+
T Consensus       234 g~L~~f~~~~fg~~~~vRfrpsy--FPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~~~-~~GfAfGl  307 (335)
T COG0016         234 GTLEEFAKKFFGEDVKVRFRPSY--FPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DPEE-YSGFAFGL  307 (335)
T ss_pred             HHHHHHHHHhcCCCcceEeecCC--CCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCC---CCCc-ceEEEEee
Confidence            77777777666 22222222322  333334567788999889999998866544333444443   1211 44  7799


Q ss_pred             cchhhee
Q psy11602        178 ATTRVIC  184 (1083)
Q Consensus       178 a~~Rli~  184 (1083)
                      ++.|+.-
T Consensus       308 GlERlAM  314 (335)
T COG0016         308 GLERLAM  314 (335)
T ss_pred             cHHHHHH
Confidence            9999854

>KOG0955|consensus

Probab=95.70  E-value=0.0083  Score=77.14  Aligned_cols=62  Identities=29%  Similarity=0.666  Sum_probs=53.8

Q ss_pred             eeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCC
Q psy11602        632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGE  700 (1083)
Q Consensus       632 ~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~  700 (1083)
                      +|+||++....|-+.|++|+.|+..+|..|-     .+++..-.  .|.|-.|.+.+.+...|.-|-..
T Consensus       221 ~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cy-----gi~~ipeg--~WlCr~Cl~s~~~~v~c~~cp~~  282 (1051)
T KOG0955|consen  221 VCCICLDGECQNSNVIVFCDGCNLAVHQECY-----GIPFIPEG--QWLCRRCLQSPQRPVRCLLCPSK  282 (1051)
T ss_pred             cceeecccccCCCceEEEcCCCcchhhhhcc-----CCCCCCCC--cEeehhhccCcCcccceEeccCC
Confidence            8999999999999999999999999997776     47775555  99999998888888889998643

>KOG1245|consensus

Probab=95.59  E-value=0.0029  Score=84.13  Aligned_cols=49  Identities=27%  Similarity=0.562  Sum_probs=44.8

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCCCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~~W 1083 (1083)
                      ...-.|.+|+..+.++.|++||.|+.+||++|+.|-|.++|.+.|.|-|
T Consensus      1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~ 1154 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPS 1154 (1404)
T ss_pred             cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCc
Confidence            3556799999999999999999999999999999999999999977754

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=95.58  E-value=0.0048  Score=59.64  Aligned_cols=57  Identities=33%  Similarity=0.567  Sum_probs=44.3

Q ss_pred             CcccccccccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCcccccc
Q psy11602        544 EQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLH  617 (1083)
Q Consensus       544 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h  617 (1083)
                      -+..|.+|++.    .|+.+           .|..++|..+||.+||..+|+..+....  +..+++..+|+.|
T Consensus        54 ~~~~C~iC~~~----~G~~i-----------~C~~~~C~~~fH~~CA~~~g~~~~~~~~--~~~~~~~~~C~~H  110 (110)
T PF13832_consen   54 FKLKCSICGKS----GGACI-----------KCSHPGCSTAFHPTCARKAGLYFEIENE--EDNVQFIAYCPKH  110 (110)
T ss_pred             cCCcCcCCCCC----CceeE-----------EcCCCCCCcCCCHHHHHHCCCeEEeeec--CCCceEEEECCCC
Confidence            35689999965    56666           8999999999999999999976554442  3367788888876

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=95.27  E-value=0.0087  Score=55.64  Aligned_cols=58  Identities=24%  Similarity=0.536  Sum_probs=43.8

Q ss_pred             ccCCcccccccccccCCCC-CcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCccccccc
Q psy11602        541 ATSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHA  618 (1083)
Q Consensus       541 ~~~~~~~c~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~  618 (1083)
                      ...-+..|.+|+     ++ |++|           +|....|+.+||++||..+|.+.+..    +....+..+|+.|.
T Consensus        32 ~~~~~~~C~~C~-----~~~Ga~i-----------~C~~~~C~~~fH~~CA~~~~~~~~~~----~~~~~~~~~C~~H~   90 (90)
T PF13771_consen   32 KRRRKLKCSICK-----KKGGACI-----------GCSHPGCSRSFHVPCARKAGCFIEFD----EDNGKFRIFCPKHS   90 (90)
T ss_pred             HHHhCCCCcCCC-----CCCCeEE-----------EEeCCCCCcEEChHHHccCCeEEEEc----cCCCceEEEChhcC
Confidence            344456899999     66 8888           99999999999999999999643332    13335777888874

>KOG2298|consensus

Probab=95.21  E-value=0.0047  Score=71.98  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=58.7

Q ss_pred             CeeEec-CChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         20 DKYLIA-TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        20 ~~~L~p-TsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      .-||+| |+--.+.++=+-..+.-..||.--+||+..||+|+    .|+.||+|+|||+|.|.-+|..|. +.+-.-|.+
T Consensus       182 kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEI----SpRsGLlRvrEF~maEIEHFvdP~-~K~h~kF~~  256 (599)
T KOG2298|consen  182 KGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEI----SPRSGLLRVREFTMAEIEHFVDPL-LKSHPKFSL  256 (599)
T ss_pred             ccccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhcc----CcccCceeEEEeehHHhhccCCCC-CCCChhhhh
Confidence            347777 34444455544455778899999999999999999    666799999999999999999998 455555554


Q ss_pred             HHH
Q psy11602         99 MIQ  101 (1083)
Q Consensus        99 ~~~  101 (1083)
                      +..
T Consensus       257 V~~  259 (599)
T KOG2298|consen  257 VAA  259 (599)
T ss_pred             hhh
Confidence            443

>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit

Probab=95.11  E-value=0.076  Score=60.86  Aligned_cols=89  Identities=17%  Similarity=0.104  Sum_probs=70.4

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|=--.+++-+++.... ..++|+|++.++++||.|....       -|.|||.....=.|..+. ..+
T Consensus        55 ~~d~~g~~l~LRpD~T~~iaR~~~~~~~-~~~~p~r~~y~g~VfR~~~~~~-------gr~re~~Q~g~Eiig~~~-~~a  125 (314)
T TIGR00443        55 LFDSLGRVLGLRPDMTTPIARAVSTRLR-DRPLPLRLCYAGNVFRTNESGA-------GRSREFTQAGVELIGAGG-PAA  125 (314)
T ss_pred             EECCCCCEEeecCcCcHHHHHHHHHhcc-cCCCCeEEEEeceEeecCCCcC-------CCcccccccceEEeCCCC-chh
Confidence            4577889999999888888888875443 5678999999999999998543       388999877776666655 334


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      +   .|++....++++.||+.
T Consensus       126 d---aEvi~l~~~~l~~lg~~  143 (314)
T TIGR00443       126 D---AEVIALLIEALKALGLK  143 (314)
T ss_pred             H---HHHHHHHHHHHHHcCCC
Confidence            4   58899999999999983

Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.

>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain

Probab=95.09  E-value=0.18  Score=56.66  Aligned_cols=69  Identities=13%  Similarity=0.104  Sum_probs=46.9

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .+++++|+-..|..+--+.+.- +.      |+|+|+++||+|...+       -|.+||+|.|.+....+- ++..+..
T Consensus        47 ~g~~~~L~~Spql~~~~~~~~~-~~------~vf~i~~~fR~e~~~~-------~hl~EF~~le~e~~~~~~-~dvm~~~  111 (269)
T cd00669          47 LGLDYYLRISPQLFKKRLMVGG-LD------RVFEINRNFRNEDLRA-------RHQPEFTMMDLEMAFADY-EDVIELT  111 (269)
T ss_pred             CCCcEEeecCHHHHHHHHHhcC-CC------cEEEEecceeCCCCCC-------CcccceeEEEEEEecCCH-HHHHHHH
Confidence            3678888877775544333221 11      9999999999994322       389999999999765543 5566655


Q ss_pred             HHHH
Q psy11602         97 DEMI  100 (1083)
Q Consensus        97 ~~~~  100 (1083)
                      ++++
T Consensus       112 e~lv  115 (269)
T cd00669         112 ERLV  115 (269)
T ss_pred             HHHH
Confidence            5555

This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=94.41  E-value=0.13  Score=60.82  Aligned_cols=89  Identities=17%  Similarity=0.116  Sum_probs=68.8

Q ss_pred             CCCC-CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         13 PEKD-ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr-~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      ..|+ +++.++|+|=--.+++-+++... ....+|+|+|.++++||.|....|       |.|||.....=.+..+. ..
T Consensus        65 f~d~~~g~~l~LRpD~T~~iaR~~a~~~-~~~~~p~r~~y~g~vfR~~~~~~g-------r~ref~Q~g~EiiG~~~-~~  135 (391)
T PRK12292         65 LVDQLSGRTLGLRPDMTAQIARIAATRL-ANRPGPLRLCYAGNVFRAQERGLG-------RSREFLQSGVELIGDAG-LE  135 (391)
T ss_pred             EeecCCCCEEEECCCCcHHHHHHHHHhc-cCCCCCeEEEeeceeeecCCCcCC-------CccchhccceEEeCCCC-ch
Confidence            4577 78899999999999999887543 345679999999999999976555       78888766554454444 23


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCc
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      ++   .|++....++++.|||+
T Consensus       136 aD---aEvi~l~~~~l~~lgl~  154 (391)
T PRK12292        136 AD---AEVILLLLEALKALGLP  154 (391)
T ss_pred             HH---HHHHHHHHHHHHHcCCC
Confidence            33   48899999999999986

>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated

Probab=93.88  E-value=0.65  Score=53.76  Aligned_cols=143  Identities=15%  Similarity=0.235  Sum_probs=85.4

Q ss_pred             eEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602         22 YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ  101 (1083)
Q Consensus        22 ~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~  101 (1083)
                      .|.-||=.|+.--...    ...+|+++..++.+||.+....       -+..+|..+|...++..-      .|..+..
T Consensus       165 ~lLRThTSp~qir~L~----~~~~Pirif~~G~VyR~D~~Da-------tH~~~FhQleglvvd~~v------tf~dLK~  227 (339)
T PRK00488        165 LLLRTHTSPVQIRTME----KQKPPIRIIAPGRVYRNDSDDA-------THSPMFHQVEGLVVDKNI------SFADLKG  227 (339)
T ss_pred             ceeeccCcHHHHHHHH----hcCCCeEEEEeeeEEEcCCCCc-------ccCcceeeEEEEEEeCCC------CHHHHHH
Confidence            4555666665432222    1678999999999999987211       157899999999998765      4566666


Q ss_pred             HHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecC--------CCceeEEEEcCCCchhhhhcccceeccCC-Cc
Q psy11602        102 NSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPG--------SGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK  171 (1083)
Q Consensus       102 ~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~--------~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~  171 (1083)
                      ..+.|++.| |=...+--.|+-=-+---|.++||....-+        ..+|+||.-|---.-..-+..+|   +.+ .+
T Consensus       228 ~L~~fl~~~fg~~~~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gi---d~~~~~  304 (339)
T PRK00488        228 TLEDFLKAFFGEDVKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGI---DPEEYS  304 (339)
T ss_pred             HHHHHHHHHcCCCCeEEecCCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCC---Ccccce
Confidence            667777766 422223333544344444556666543222        24699998766544333333333   111 11


Q ss_pred             cccccccchhhee
Q psy11602        172 IYATACATTRVIC  184 (1083)
Q Consensus       172 ~n~tg~a~~Rli~  184 (1083)
                      --+.|+++.|+.-
T Consensus       305 G~AfG~GleRlaM  317 (339)
T PRK00488        305 GFAFGMGIERLAM  317 (339)
T ss_pred             EEEEeecHHHHHH
Confidence            3355888898754

>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed

Probab=93.85  E-value=0.03  Score=66.16  Aligned_cols=60  Identities=17%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             hhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy11602        287 MLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVV  354 (1083)
Q Consensus       287 ~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv  354 (1083)
                      .+| +++....|||......+  +.++|.+++..   ...   +...|+++.+.++++|+.|||+|+++
T Consensus       280 ~~P~RIFEIG~VFR~E~~g~~--hlrEf~Ql~~~---iiG---s~~~f~dL~~lleeLL~~LGI~f~i~  340 (417)
T PRK09537        280 PDPIKIFEIGPCYRKESDGKE--HLEEFTMVNFC---QMG---SGCTRENLENIIDDFLKHLGIDYEII  340 (417)
T ss_pred             cCCeeEEEEeceEecCCCCCC--CcceEEEEEEE---EeC---CchHHHHHHHHHHHHHHHCCCCcEEe
Confidence            345 67777789988754433  55666655444   332   34568889999999999999999998

>KOG0383|consensus

Probab=93.66  E-value=0.023  Score=70.64  Aligned_cols=41  Identities=32%  Similarity=0.757  Sum_probs=37.2

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKT 1078 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~ 1078 (1083)
                      .....|++|+..++   ++.||+|--+||.+|++|||+..|.++
T Consensus        45 ~~~e~c~ic~~~g~---~l~c~tC~~s~h~~cl~~pl~~~p~~~   85 (696)
T KOG0383|consen   45 AEQEACRICADGGE---LLWCDTCPASFHASCLGPPLTPQPNGE   85 (696)
T ss_pred             hhhhhhhhhcCCCc---EEEeccccHHHHHHccCCCCCcCCccc
Confidence            45667999998777   899999999999999999999999987

>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=93.37  E-value=0.24  Score=56.13  Aligned_cols=86  Identities=10%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|=--.+|+-+++.... ...+|+|++.++++||.|.             |||.....=.+-.+..   
T Consensus        63 ~~D~~g~~l~LRpD~T~~iaR~~a~~~~-~~~~p~r~~Y~g~vfR~~~-------------rEf~Q~GvEliG~~~~---  125 (281)
T PRK12293         63 FSDEKNHQISLRADSTLDVVRIVTKRLG-RSTEHKKWFYIQPVFRYPS-------------NEIYQIGAELIGEEDL---  125 (281)
T ss_pred             EECCCCCEEEECCcCCHHHHHHHHHhcc-cCCCceeEEEeccEEecCC-------------CcccccCeEeeCCCCH---
Confidence            4577888999999999999999875432 3478999999999999873             5776655444444431   


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEec
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIV  120 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~  120 (1083)
                          .|++....++++.||+++. +++.
T Consensus       126 ----~Evi~la~~~l~~lgl~~~-i~ig  148 (281)
T PRK12293        126 ----SEILNIAAEIFEELELEPI-LQIS  148 (281)
T ss_pred             ----HHHHHHHHHHHHHcCCCCE-EEEC
Confidence                3899999999999999873 5543

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=93.01  E-value=0.073  Score=54.88  Aligned_cols=70  Identities=20%  Similarity=0.464  Sum_probs=47.3

Q ss_pred             cccccCC-CCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCC--cccccccCCC--------CCCceeecC
Q psy11602        693 VCCVCLG-ERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEP--WFCESCRAGI--------AEPTCELCP  761 (1083)
Q Consensus       693 ~C~VC~~-~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~--W~Cd~C~~~~--------~~~~C~LCp  761 (1083)
                      .|.+|.. +.+.+..+||+|.+|-.+||+.|.|......-.-|..  ..+.  .-|+.|....        ..-.|.-|.
T Consensus         1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKV--g~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~   78 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKV--GDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK   78 (175)
T ss_pred             CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEE--cCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence            4899975 3556788999999999999999999854211000111  2233  4588887642        234799998


Q ss_pred             CCC
Q psy11602        762 NFG  764 (1083)
Q Consensus       762 ~~g  764 (1083)
                      ..|
T Consensus        79 ~~G   81 (175)
T PF15446_consen   79 KPG   81 (175)
T ss_pred             CCC
Confidence            855

>PLN02972 Histidyl-tRNA synthetase

Probab=92.52  E-value=0.4  Score=60.67  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.+.|+|=--.|++-+++...    ..|+|+|+++++||+|....|       |.|||.....=.+.......+
T Consensus       388 f~D~gGr~LaLRPDlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e~pqkG-------R~REF~Q~G~EIIG~~~~~~a  456 (763)
T PLN02972        388 LADQGGELCSLRYDLTVPFARYVAMNG----ITSFKRYQIAKVYRRDNPSKG-------RYREFYQCDFDIAGVYEPMGP  456 (763)
T ss_pred             EECCCCCEEEeCCCChHHHHHHHHhCC----CCcceEEEeccEEecCCCCCC-------CCccceEEeEEEEcCCCcchh
Confidence            568889999999999999999887643    248999999999999986555       667886544333332221112


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp  113 (1083)
                         =.|++....++++.|||+
T Consensus       457 ---DAEVI~La~E~L~~LGi~  474 (763)
T PLN02972        457 ---DFEIIKVLTELLDELDIG  474 (763)
T ss_pred             ---hHHHHHHHHHHHHhCCCC
Confidence               246888888999999985

>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=92.48  E-value=0.46  Score=56.30  Aligned_cols=88  Identities=7%  Similarity=-0.118  Sum_probs=65.2

Q ss_pred             CCCC-CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         13 PEKD-ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr-~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      ..|+ .++.+.|+|=--.+++-+.+...  ....|+|+|.++++||.+....|       |.|||.....=.+..+. ..
T Consensus        69 f~D~~~g~~l~LRpD~T~~iaR~~a~~~--~~~~p~R~~Y~g~VfR~~~~~~g-------r~rEf~Q~GvEiiG~~~-~~  138 (392)
T PRK12421         69 LIDQLSGRLMGVRADITPQVARIDAHLL--NREGVARLCYAGSVLHTLPQGLF-------GSRTPLQLGAELYGHAG-IE  138 (392)
T ss_pred             EEcCCCCcEEEECCcCCHHHHHHHHhhc--CCCCceEEEEeeeEEEcCCCcCC-------CcCccceeceEEeCCCC-ch
Confidence            3466 57889999999999999877543  23679999999999998874444       77888766555554444 22


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCc
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      ++   .|++....++++.||++
T Consensus       139 aD---aEvi~l~~e~l~~lgi~  157 (392)
T PRK12421        139 AD---LEIIRLMLGLLRNAGVP  157 (392)
T ss_pred             hH---HHHHHHHHHHHHHcCCC
Confidence            32   46788888899999986

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=91.45  E-value=0.079  Score=62.00  Aligned_cols=79  Identities=27%  Similarity=0.493  Sum_probs=61.6

Q ss_pred             eeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCcEEEc
Q psy11602        632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNEIVEC  711 (1083)
Q Consensus       632 ~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~C  711 (1083)
                      .|.+|++..+.|.+.|+.|+.|...+|-.|     +.|.|+...  .|+|-+|+-..-+...|+-|-+.+.      .||
T Consensus       195 ~C~~c~~t~~eN~naiVfCdgC~i~VHq~C-----YGI~f~peG--~WlCrkCi~~~~~i~~C~fCps~dG------aFk  261 (669)
T COG5141         195 ICTKCTSTHNENSNAIVFCDGCEICVHQSC-----YGIQFLPEG--FWLCRKCIYGEYQIRCCSFCPSSDG------AFK  261 (669)
T ss_pred             hhHhccccccCCcceEEEecCcchhhhhhc-----ccceecCcc--hhhhhhhcccccceeEEEeccCCCC------cee
Confidence            699999999999999999999999999555     488887776  9999999877777778999974432      244


Q ss_pred             cc-CCcccccccc
Q psy11602        712 DS-CGVTVHEGCY  723 (1083)
Q Consensus       712 d~-C~i~VH~~CY  723 (1083)
                      .- =|.=+|..|-
T Consensus       262 qT~dgrW~H~iCA  274 (669)
T COG5141         262 QTSDGRWGHVICA  274 (669)
T ss_pred             eccCCchHhHhHH
Confidence            32 3556677773

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.21  E-value=0.13  Score=43.53  Aligned_cols=33  Identities=33%  Similarity=0.706  Sum_probs=28.0

Q ss_pred             CccccccCCCCCCCCCcEEEcccCCccccccccc
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYG  724 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYG  724 (1083)
                      ...|.+|...- .+.+.+|+|..|+-.+|+.||-
T Consensus         5 ~~~C~~Cg~~~-~~~dDiVvCp~CgapyHR~C~~   37 (54)
T PF14446_consen    5 GCKCPVCGKKF-KDGDDIVVCPECGAPYHRDCWE   37 (54)
T ss_pred             CccChhhCCcc-cCCCCEEECCCCCCcccHHHHh
Confidence            45899998653 3588999999999999999994

>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=90.99  E-value=0.79  Score=54.01  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=64.1

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|=--.+++-++...   ....|+|+|.++++||.|   .|       |.|||.....=.+..+....|
T Consensus        52 f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~p~R~~Y~g~VfR~~---~g-------r~rEf~Q~GvEiiG~~~~~~a  118 (373)
T PRK12295         52 TSDENGEELCLRPDFTIPVCRRHIAT---AGGEPARYAYLGEVFRQR---RD-------RASEFLQAGIESFGRADPAAA  118 (373)
T ss_pred             EECCCCCEEeeCCCCcHHHHHHHHHc---CCCCCeEEEEEccEEECC---CC-------CCCcceEeeEEeeCCCCCccc
Confidence            56888999999999999999887654   246799999999999999   23       557886544444432221112


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEE
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVN  118 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~  118 (1083)
                         =.|++....++++.|||.=..+.
T Consensus       119 ---DaEvi~l~~~~L~~lgl~~~~i~  141 (373)
T PRK12295        119 ---DAEVLALALEALAALGPGDLEVR  141 (373)
T ss_pred             ---hHHHHHHHHHHHHHcCCCceEEE
Confidence               25678888889999998633333

>KOG4299|consensus

Probab=90.41  E-value=0.14  Score=62.17  Aligned_cols=53  Identities=26%  Similarity=0.695  Sum_probs=43.1

Q ss_pred             CccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..+|+-|.+...  -+.++.||.|...+||.|.-++..+      ...|.|.|+|--|..-
T Consensus       253 ~~fCsaCn~~~~--F~~~i~CD~Cp~sFH~~CLePPl~~------eniP~g~W~C~ec~~k  305 (613)
T KOG4299|consen  253 EDFCSACNGSGL--FNDIICCDGCPRSFHQTCLEPPLEP------ENIPPGSWFCPECKIK  305 (613)
T ss_pred             HHHHHHhCCccc--cccceeecCCchHHHHhhcCCCCCc------ccCCCCccccCCCeee
Confidence            449999997644  4999999999999999999886432      2348899999999864

>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit

Probab=89.99  E-value=2.9  Score=47.69  Aligned_cols=143  Identities=13%  Similarity=0.088  Sum_probs=82.5

Q ss_pred             CeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602         20 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM   99 (1083)
Q Consensus        20 ~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~   99 (1083)
                      ..+|+++-=-.+...++....    .|++++.++++||.+..    +..   +..||.+++.......-      .|..+
T Consensus       128 ~~vLRtsl~p~ll~~l~~N~~----~pirlFEiGrVfr~d~~----d~~---~~pef~ql~gl~~~~~~------~f~dL  190 (294)
T TIGR00468       128 RLLLRTHTTAVQLRTMEENEK----PPIRIFSPGRVFRNDTV----DAT---HLPEFHQVEGLVIDKNV------SFTNL  190 (294)
T ss_pred             CcceecccHHHHHHHHHhcCC----CCceEEEecceEEcCCC----CCc---cCChhhEEEEEEECCCC------CHHHH
Confidence            346666555445544443222    89999999999998752    111   13388888888665322      37889


Q ss_pred             HHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccccc
Q psy11602        100 IQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACAT  179 (1083)
Q Consensus       100 ~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~a~  179 (1083)
                      ..+.+.|++.|++...+--.++..-+---+.+.||  +.+...+|++|+.|.-.--...+.++|..   ...+...++.+
T Consensus       191 Kg~le~ll~~l~~~~~~~~~~~~~p~~~Ps~e~~i--~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~---~~~v~afel~l  265 (294)
T TIGR00468       191 KGFLEEFLKKMFGETEIRFRPSYFPFTEPSAEIDV--YCWEGKTWLEVLGAGMFRPEVLEPMGIDP---TYPGFAWGIGI  265 (294)
T ss_pred             HHHHHHHHHHhCCCcceeeccCCCCCCCCCEEEEE--EEeCCCccEEEEEeccCcHHHHHHCCCCC---CCeEEEEEeeH
Confidence            99999999999986211112322222222333444  44223458899877655545555566531   01234456666


Q ss_pred             hhhee
Q psy11602        180 TRVIC  184 (1083)
Q Consensus       180 ~Rli~  184 (1083)
                      .|+..
T Consensus       266 erl~m  270 (294)
T TIGR00468       266 ERLAM  270 (294)
T ss_pred             HHHHH
Confidence            66543

Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.

>KOG0954|consensus

Probab=89.69  E-value=0.24  Score=60.77  Aligned_cols=64  Identities=25%  Similarity=0.451  Sum_probs=46.7

Q ss_pred             cccCCCceeeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCcccccc
Q psy11602        624 FSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVC  697 (1083)
Q Consensus       624 ~~~~~~~~~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC  697 (1083)
                      +.-++. +.|++|...++.+.+.||+|+.|...+|..|-     .|..+..  ..|.|-.|..  .-...|-.|
T Consensus       266 ie~ded-viCDvCrspD~e~~neMVfCd~Cn~cVHqaCy-----GIle~p~--gpWlCr~Cal--g~~ppCvLC  329 (893)
T KOG0954|consen  266 IEYDED-VICDVCRSPDSEEANEMVFCDKCNICVHQACY-----GILEVPE--GPWLCRTCAL--GIEPPCVLC  329 (893)
T ss_pred             eecccc-ceeceecCCCccccceeEEeccchhHHHHhhh-----ceeecCC--CCeeehhccc--cCCCCeeec
Confidence            333444 56999999999999999999999999998885     3433333  5898877653  244466666

>KOG1973|consensus

Probab=89.55  E-value=0.17  Score=57.11  Aligned_cols=38  Identities=26%  Similarity=0.795  Sum_probs=33.4

Q ss_pred             CCcEEEccc--CC-cccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        705 VNEIVECDS--CG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       705 ~n~iv~Cd~--C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      -.+||-||+  |. -=+|..|-|+...          |.|.|+|..|....
T Consensus       229 yg~Mi~CDn~~C~~eWFH~~CVGL~~~----------PkgkWyC~~C~~~~  269 (274)
T KOG1973|consen  229 YGKMIGCDNPGCPIEWFHFTCVGLKTK----------PKGKWYCPRCKAEN  269 (274)
T ss_pred             cccccccCCCCCCcceEEEeccccccC----------CCCcccchhhhhhh
Confidence            579999999  99 7899999999866          78999999998653

>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A

Probab=89.31  E-value=2.2  Score=48.55  Aligned_cols=89  Identities=21%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|++++.+.|+|=--.+++-+++....  ...|.|+|.++++||++....|       |.+||..+..=.+..+. ..+
T Consensus        57 ~~D~~G~~l~LR~D~T~~iaR~~a~~~~--~~~~~r~~y~g~vfR~~~~~~g-------~~re~~Q~g~Eiig~~~-~~~  126 (311)
T PF13393_consen   57 FLDRSGRVLALRPDLTVPIARYVARNLN--LPRPKRYYYIGPVFRYERPGKG-------RPREFYQCGFEIIGSSS-LEA  126 (311)
T ss_dssp             EECTTSSEEEE-SSSHHHHHHHHHHCCG--SSSSEEEEEEEEEEEEETTTTT-------BESEEEEEEEEEESSSS-HHH
T ss_pred             EEecCCcEeccCCCCcHHHHHHHHHhcC--cCCCceEEEEcceeeccccCCC-------CCceeEEEEEEEECCCC-HHH
Confidence            4588999999999999999999987532  7789999999999999974333       78888766544444444 222


Q ss_pred             HHHHHHHHHHHHHHHH-HcCCce
Q psy11602         93 WKMLDEMIQNSEEFYA-DLGIAY  114 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~-~LgLpy  114 (1083)
                         =.|++....++++ .|++.-
T Consensus       127 ---daEvi~l~~e~l~~~l~~~~  146 (311)
T PF13393_consen  127 ---DAEVIKLADEILDRELGLEN  146 (311)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTTS
T ss_pred             ---HHHHHHHHHHHHHhhcCCCC
Confidence               3578888889997 888743

...

>KOG1084|consensus

Probab=88.82  E-value=0.19  Score=58.99  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=61.1

Q ss_pred             CCceeecccccccCCcEEecccccCceeeecCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeeccCCCCc
Q psy11602        812 VGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEVVFPQPP  891 (1083)
Q Consensus       812 ~~~WvHv~CAlw~pev~f~~~~~~~pv~~~~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~~~~~~~  891 (1083)
                      ...|.|+.|++|.|.+.+.....|.++.-..+   ||..+.|..|.+     .|+.+.|....|...+|..+.....   
T Consensus       237 ~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v~---r~~~~~c~~c~k-----~ga~~~c~~~~~~~~~h~~c~~~~~---  305 (375)
T KOG1084|consen  237 FELWYHRYCALWAPNVHESQGGQLTNVDNAVI---RFPSLQCILCQK-----PGATLKCVQASLLSNAHFPCARAKN---  305 (375)
T ss_pred             hhHHHHHHHHhcCCcceeccCccccCchhhhh---cccchhcccccC-----CCCchhhhhhhhhcccCcccccCcc---
Confidence            45899999999999999999887877764433   332247999986     7999999999999999986653222   


Q ss_pred             cchhhhhHHhhhhccC
Q psy11602        892 QRKLGKYKVKYVDMKS  907 (1083)
Q Consensus       892 ~~~~~~~r~~y~~~~~  907 (1083)
                      .+.+...+..|+..|.
T Consensus       306 ~~~~~~~r~v~~~~h~  321 (375)
T KOG1084|consen  306 GIPLDYDRKVSCPRHR  321 (375)
T ss_pred             cccchhhhhccCCCCC
Confidence            2223344555665554

>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type

Probab=88.59  E-value=0.44  Score=59.03  Aligned_cols=46  Identities=17%  Similarity=0.476  Sum_probs=36.1

Q ss_pred             eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602         48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ  101 (1083)
Q Consensus        48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~  101 (1083)
                      |+|||++|||+|.....       |.-||+|.|.|....+. ++..+..++|+.
T Consensus       208 rvfqI~~~FR~E~~~t~-------r~pEFT~le~E~af~d~-~dvm~~~E~li~  253 (583)
T TIGR00459       208 RYYQIARCFRDEDLRAD-------RQPEFTQIDMEMSFMTQ-EDVMELIEKLVS  253 (583)
T ss_pred             cEEEEcceeeCCCCCCC-------CCcccCcceeeecCCCH-HHHHHHHHHHHH
Confidence            79999999999994332       77999999999877654 667776666663

In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.

>PLN02903 aminoacyl-tRNA ligase

Probab=88.49  E-value=0.55  Score=58.66  Aligned_cols=46  Identities=24%  Similarity=0.525  Sum_probs=35.6

Q ss_pred             eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602         48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ  101 (1083)
Q Consensus        48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~  101 (1083)
                      |+|||++|||+|.....       |.-||+|.|.|....+. ++..+..++|+.
T Consensus       274 RvFqIa~~FR~E~~~t~-------RhpEFTqLE~E~sf~d~-~dvm~~~E~li~  319 (652)
T PLN02903        274 RYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPL-EDMLKLNEDLIR  319 (652)
T ss_pred             cEEEEehhhccCCCCCC-------cccceeeeeeeecCCCH-HHHHHHHHHHHH
Confidence            79999999999984322       77899999999776654 566666666663

>PRK09350 poxB regulator PoxA; Provisional

Probab=88.48  E-value=0.36  Score=55.32  Aligned_cols=70  Identities=11%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      ..++.++|+-..|..+.-+++..      + -|+|+++++||+|...+       -+..||+|.|.|....+- ++..+.
T Consensus        55 ~~~~~~~L~~SPe~~~kr~la~~------~-~rvf~i~~~FR~e~~~~-------~H~~EFt~lE~y~~~~d~-~dlm~~  119 (306)
T PRK09350         55 SQGKTLWLMTSPEYHMKRLLAAG------S-GPIFQICKSFRNEEAGR-------YHNPEFTMLEWYRPHYDM-YRLMNE  119 (306)
T ss_pred             cCCcceEEecCHHHHHHHHhhcc------c-cceEEecceeecCCCCC-------CCCcHHHhhhhhhhCCCH-HHHHHH
Confidence            45678899877777655444322      2 29999999999999533       378899999999776543 344444


Q ss_pred             HHHHH
Q psy11602         96 LDEMI  100 (1083)
Q Consensus        96 ~~~~~  100 (1083)
                      .+.++
T Consensus       120 ~E~li  124 (306)
T PRK09350        120 VDDLL  124 (306)
T ss_pred             HHHHH
Confidence            44444

>KOG0956|consensus

Probab=87.68  E-value=0.19  Score=61.08  Aligned_cols=45  Identities=38%  Similarity=0.750  Sum_probs=33.3

Q ss_pred             ccCCCccceeeecccccccccccccccccccCCCCCCccccccccc
Q psy11602        575 ECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADK  620 (1083)
Q Consensus       575 ~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h~~k  620 (1083)
                      .|.--+|+.-||++|||..|||=||.--. -...-||-+|+.|..|
T Consensus       139 tCNKs~CkqaFHVTCAQ~~GLLCEE~gn~-~dNVKYCGYCk~HfsK  183 (900)
T KOG0956|consen  139 TCNKSGCKQAFHVTCAQRAGLLCEEEGNI-SDNVKYCGYCKYHFSK  183 (900)
T ss_pred             ecccccchhhhhhhHhhhhccceeccccc-cccceechhHHHHHHH
Confidence            67777888999999999999885554221 2344677799999644

>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=87.29  E-value=0.55  Score=56.75  Aligned_cols=83  Identities=17%  Similarity=0.309  Sum_probs=52.2

Q ss_pred             CeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602         20 DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM   99 (1083)
Q Consensus        20 ~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~   99 (1083)
                      ++|=-|-|-+-+-.|.+-.=+.      |||||.+|||||.--.  |     |+=||+.+|+=.-..++ ++-.++.|.|
T Consensus       189 ~FYALPQSPQlfKQLLMvsGfd------RYyQIarCFRDEDlRa--D-----RQPEFTQiD~EmSF~~~-edv~~~~E~l  254 (585)
T COG0173         189 KFYALPQSPQLFKQLLMVAGFD------RYYQIARCFRDEDLRA--D-----RQPEFTQIDLEMSFVDE-EDVMELIEKL  254 (585)
T ss_pred             ceeecCCCHHHHHHHHHHhccc------ceeeeeeeeccccccc--c-----cCCcceeEeEEeecCCH-HHHHHHHHHH
Confidence            3555566655555544432222      7999999999998433  3     78899999986555555 5677777777


Q ss_pred             HHH-HHHHHH-HcCCceEE
Q psy11602        100 IQN-SEEFYA-DLGIAYRV  116 (1083)
Q Consensus       100 ~~~-y~~if~-~LgLpyrv  116 (1083)
                      +.. ++++.. .|..||..
T Consensus       255 ~~~vf~~~~~i~l~~pFpr  273 (585)
T COG0173         255 LRYVFKEVKGIELKTPFPR  273 (585)
T ss_pred             HHHHHHHhcCCccCCCccc
Confidence            743 333332 55555543

>PRK00476 aspS aspartyl-tRNA synthetase; Validated

Probab=84.93  E-value=0.97  Score=56.31  Aligned_cols=46  Identities=20%  Similarity=0.462  Sum_probs=34.4

Q ss_pred             eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602         48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ  101 (1083)
Q Consensus        48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~  101 (1083)
                      |+|||++|||+|.....       |.-||+|.|.+....+. ++..+..++++.
T Consensus       211 rvfqi~~~FR~E~~~~~-------r~~EFt~le~e~af~~~-~dvm~~~E~li~  256 (588)
T PRK00476        211 RYYQIARCFRDEDLRAD-------RQPEFTQIDIEMSFVTQ-EDVMALMEGLIR  256 (588)
T ss_pred             ceEEEeceeecCCCCCC-------cCcccccceeeecCCCH-HHHHHHHHHHHH
Confidence            79999999999993211       45599999999877654 566666666663

>KOG1246|consensus

Probab=83.44  E-value=0.73  Score=60.36  Aligned_cols=44  Identities=32%  Similarity=0.739  Sum_probs=39.6

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCc
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
                      .....|..|.+..++..+ +||.|++.||.+|+.||++.+|++.|
T Consensus       153 ~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (904)
T KOG1246|consen  153 IDYPQCNTCSKGKEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDW  196 (904)
T ss_pred             ccchhhhccccCCCccce-ecccccCcccccccCCCCCcCCcCcc
Confidence            467789999999988555 99999999999999999999999994

>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

Probab=83.42  E-value=2.3  Score=47.36  Aligned_cols=68  Identities=21%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             hh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCc
Q psy11602        288 LD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGAL  361 (1083)
Q Consensus       288 ~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl  361 (1083)
                      +| +++....+||+.+...|-.|.+....+|+|+...+      ..-.|++..+.++++.|+++--.+.+..-++
T Consensus        81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~------~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i  149 (261)
T cd00773          81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSP------LADAEVIALAVEILEALGLKDFQIKINHRGI  149 (261)
T ss_pred             CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCCh------HHHHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            45 67777889998887788888888888999987333      2226799999999999998754555554444

HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional

Probab=82.52  E-value=1.1  Score=56.53  Aligned_cols=69  Identities=17%  Similarity=0.280  Sum_probs=44.5

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ..+|.-|+|.+-...+..-.-+      =|+|||++|||+|...    +.   |.-||+|.|.|....+. ++.....+.
T Consensus       203 ~~~y~L~qSPQlykq~lm~~G~------~rvfqI~~~FR~E~~~----t~---r~pEFT~LE~E~af~d~-~dvm~l~E~  268 (706)
T PRK12820        203 KEFYALPQSPQLFKQLLMIAGF------ERYFQLARCFRDEDLR----PN---RQPEFTQLDIEASFIDE-EFIFELIEE  268 (706)
T ss_pred             CcceecCCCHHHHHHHHHhccC------CcEEEEechhcCCCCC----CC---cCccccccceeeccCCH-HHHHHHHHH
Confidence            3445455666544443321111      2799999999999942    22   67999999999766655 566666666


Q ss_pred             HHH
Q psy11602         99 MIQ  101 (1083)
Q Consensus        99 ~~~  101 (1083)
                      |+.
T Consensus       269 li~  271 (706)
T PRK12820        269 LTA  271 (706)
T ss_pred             HHH
Confidence            654

>KOG1973|consensus

Probab=81.28  E-value=0.85  Score=51.51  Aligned_cols=42  Identities=24%  Similarity=0.557  Sum_probs=33.2

Q ss_pred             ccccccccCCCCCCcceecCc--cC-CCccccCCCCCCCCCCCCCcCC
Q psy11602       1037 SHKCGLCHLSHDPHTMAKCDT--CH-LYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1037 ~~~c~~C~~~~~~~~~~~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ....++|. ...-..|+-||.  |. .|||+.|+-  |+.-|+|.|+|
T Consensus       218 e~~yC~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC  262 (274)
T KOG1973|consen  218 EPTYCICN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYC  262 (274)
T ss_pred             CCEEEEec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccc
Confidence            33455666 344677999999  99 999999997  88999999665

>PRK00484 lysS lysyl-tRNA synthetase; Reviewed

Probab=80.25  E-value=3.1  Score=50.86  Aligned_cols=70  Identities=20%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      -.+.++||+-..|..+=-++..   .   + =|+|+|+++||+|..    ++   -+.-||+|.|.|....+. ++..+.
T Consensus       217 ~~~~~~yL~~Spql~lk~l~v~---g---~-~rVfei~~~FR~E~~----~~---rH~pEFt~lE~e~a~~d~-~d~m~~  281 (491)
T PRK00484        217 ALDIDLYLRIAPELYLKRLIVG---G---F-ERVYEIGRNFRNEGI----DT---RHNPEFTMLEFYQAYADY-NDMMDL  281 (491)
T ss_pred             cCCCceEeccCHHHHHHHHHhc---c---C-CcEEEEecceecCCC----CC---CcCCceEEEEEEEecCCH-HHHHHH
Confidence            3467788876666443333221   1   1 379999999999983    23   478899999999776543 555555


Q ss_pred             HHHHH
Q psy11602         96 LDEMI  100 (1083)
Q Consensus        96 ~~~~~  100 (1083)
                      .++++
T Consensus       282 ~E~li  286 (491)
T PRK00484        282 TEELI  286 (491)
T ss_pred             HHHHH
Confidence            55555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1083
3vbb_A	522	Crystal Structure Of Seryl-Trna Synthetase From Hum		3e-87
3vbb_A	522	Crystal Structure Of Seryl-Trna Synthetase From Hum		9e-69
3vbb_A	522	Crystal Structure Of Seryl-Trna Synthetase From Hum		7e-14
3lsq_A	484	Trypanosoma Brucei Seryl-Trna Synthetase Length = 4		1e-65
3lsq_A	484	Trypanosoma Brucei Seryl-Trna Synthetase Length = 4		1e-49
3lsq_A	484	Trypanosoma Brucei Seryl-Trna Synthetase Length = 4		5e-09
3qne_A	485	Candida Albicans Seryl-Trna Synthetase Length = 485		1e-62
3qne_A	485	Candida Albicans Seryl-Trna Synthetase Length = 485		1e-46
3qne_A	485	Candida Albicans Seryl-Trna Synthetase Length = 485		1e-08
3qo5_A	485	Crystal Structure Of The Seryl-Trna Synthetase From		1e-62
3qo5_A	485	Crystal Structure Of The Seryl-Trna Synthetase From		1e-46
3qo5_A	485	Crystal Structure Of The Seryl-Trna Synthetase From		1e-08
2dq0_A	455	Crystal Structure Of Seryl-Trna Synthetase From Pyr		3e-52
2dq0_A	455	Crystal Structure Of Seryl-Trna Synthetase From Pyr		1e-41
2dq0_A	455	Crystal Structure Of Seryl-Trna Synthetase From Pyr		1e-04
2dq3_A	425	Crystal Structure Of Aq_298 Length = 425		3e-38
2dq3_A	425	Crystal Structure Of Aq_298 Length = 425		4e-29
3err_A	536	Microtubule Binding Domain From Mouse Cytoplasmic D		1e-36
3err_A	536	Microtubule Binding Domain From Mouse Cytoplasmic D		1e-25
1sry_A	421	Refined Crystal Structure Of The Seryl-Trna Synthet		2e-36
1sry_A	421	Refined Crystal Structure Of The Seryl-Trna Synthet		1e-25
1wle_A	501	Crystal Structure Of Mammalian Mitochondrial Seryl-		2e-30
1wle_A	501	Crystal Structure Of Mammalian Mitochondrial Seryl-		4e-27

>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522

Iteration: 1
 Score =  320 bits (819), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/235 (65%), Positives = 183/235 (77%), Gaps = 16/235 (6%)
Query: 1   VIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV 60
           VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEV
Sbjct: 250 VIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEV 305
Query: 61  GSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIV 120
           GSHGRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIV
Sbjct: 306 GSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365
Query: 121 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ---------K 171
           SG+LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+          
Sbjct: 366 SGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHM 425
Query: 172 IYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID 226
           + AT CATTR ICAILE +QTE G+ +P+ L++F+P   L E   IPFVK API+
Sbjct: 426 LNATMCATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKPAPIE 477

>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522

Iteration: 1
 Score =  258 bits (660), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 120/170 (70%), Positives = 143/170 (84%), Gaps = 3/170 (1%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DTRGIFRVHQFEK+EQFV +SPHD++SW+  +EMI  +EEFY  LGI Y +VNIVSG+LN
Sbjct: 311 DTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLN 370
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           HAA+KKLDLEAWFPGSGAFRELVSCSNC  YQ+RRL +RYGQTKKM +K+EFVHMLNAT 
Sbjct: 371 HAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATM 430
Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPID 472
           CATTR ICAILE +QTE G+ +P+ L++F+P   + E   IPFVK API+
Sbjct: 431 CATTRTICAILENYQTEKGITVPEKLKEFMPP-GLQEL--IPFVKPAPIE 477

>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 504 IATEKERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPI 563
           +A   + +  L +VIGKG +  D     +  D+KYLIATSEQPI A+HRD WL    LPI
Sbjct: 237 VAQLSQFDEELYKVIGKGSEKSDD----NSYDEKYLIATSEQPIAALHRDEWLRPEDLPI 292
Query: 564 RYLGVSTCFRQEC 576
           +Y G+STCFRQE 
Sbjct: 293 KYAGLSTCFRQEV 305

>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484

Iteration: 1
 Score =  248 bits (633), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 143/205 (69%), Gaps = 12/205 (5%)
Query: 19  DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK 78
           D KYLIATSE PI A HR  W  E   P++Y G+STCFR+E G+HGRDT GIFRVHQF+K
Sbjct: 262 DKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDK 321
Query: 79  VEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWF 138
           +EQFV+ SP  +ESW+ L++MI  SEEF   LG+ YRVVNI SGALN+AAAKK DLEAWF
Sbjct: 322 IEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWF 381
Query: 139 PGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYA------------TACATTRVICAI 186
           P SGAFRELVSCSNC DYQS+ +  RYG   +   A            T CA TR +C I
Sbjct: 382 PASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCI 441
Query: 187 LETHQTETGVRIPDCLRKFVPAVYL 211
            E +QTE GV IPD LR ++  + +
Sbjct: 442 CENYQTEEGVVIPDVLRPYMMGIEM 466

>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484

Iteration: 1
 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 5/157 (3%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DT GIFRVHQF+K+EQFV+ SP  +ESW+ L++MI  SEEF   LG+ YRVVNI SGALN
Sbjct: 309 DTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALN 368
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYG----QTKKMNEKIEFVHML 418
           +AAAKK DLEAWFP SGAFRELVSCSNC  YQS+ +  RYG     T   N K E+ HML
Sbjct: 369 NAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVK-EYCHML 427
Query: 419 NATACATTRVICAILETHQTETGVRIPDCLRKFVPAV 455
           N T CA TR +C I E +QTE GV IPD LR ++  +
Sbjct: 428 NGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGI 464

>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 30/44 (68%)
Query: 535 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDA 578
           D KYLIATSE PI A HR  W  E   P++Y G+STCFR+E  A
Sbjct: 262 DKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGA 305

>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485

Iteration: 1
 Score =  238 bits (608), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 146/220 (66%), Gaps = 17/220 (7%)
Query: 16  DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
           D  D+KYLIATSEQPI A H   W   P   LP+RY G S+CFR+E GSHG+D  GIFRV
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRV 295
Query: 74  HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
           H FEK+EQFVLT P  ++SW+  D MI  SEEFY  LG+ YRVV IVSG LN+AAAKK D
Sbjct: 296 HAFEKIEQFVLTEP--EKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYD 353
Query: 134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK---------IYATACATTRVIC 184
           LEAWFP    ++ELVSCSNC DYQSR L +R G  +Q          + +T  AT R IC
Sbjct: 354 LEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTIC 413
Query: 185 AILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAP 224
            ILE +Q E G+ IP+ LRK++P     E   IP++K  P
Sbjct: 414 CILENYQKEDGLVIPEVLRKYIPG----EPEFIPYIKELP 449

>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485

Iteration: 1
 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 116/168 (69%), Gaps = 6/168 (3%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D  GIFRVH FEK+EQFVLT P  ++SW+  D MI  SEEFY  LG+ YRVV IVSG LN
Sbjct: 288 DAWGIFRVHAFEKIEQFVLTEP--EKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELN 345
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           +AAAKK DLEAWFP    ++ELVSCSNC  YQSR L +R G  ++  ++ ++VH LN+T 
Sbjct: 346 NAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTL 405
Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP 470
            AT R IC ILE +Q E G+ IP+ LRK++P     E   IP++K  P
Sbjct: 406 SATERTICCILENYQKEDGLVIPEVLRKYIPG----EPEFIPYIKELP 449

>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 532 DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQECDA 578
           D  D+KYLIATSEQPI A H   W   P   LP+RY G S+CFR+E  +
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGS 284

>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485

Iteration: 1
 Score =  238 bits (607), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 146/220 (66%), Gaps = 17/220 (7%)
Query: 16  DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
           D  D+KYLIATSEQPI A H   W   P   LP+RY G S+CFR+E GSHG+D  GIFRV
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRV 295
Query: 74  HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
           H FEK+EQFVLT P  ++SW+  D MI  SEEFY  LG+ YRVV IVSG LN+AAAKK D
Sbjct: 296 HAFEKIEQFVLTEP--EKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYD 353
Query: 134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK---------IYATACATTRVIC 184
           LEAWFP    ++ELVSCSNC DYQSR L +R G  +Q          + +T  AT R IC
Sbjct: 354 LEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTIC 413
Query: 185 AILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAP 224
            ILE +Q E G+ IP+ LRK++P     E   IP++K  P
Sbjct: 414 CILENYQKEDGLVIPEVLRKYIPG----EPEFIPYIKELP 449

>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485

Iteration: 1
 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 116/168 (69%), Gaps = 6/168 (3%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D  GIFRVH FEK+EQFVLT P  ++SW+  D MI  SEEFY  LG+ YRVV IVSG LN
Sbjct: 288 DAWGIFRVHAFEKIEQFVLTEP--EKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELN 345
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           +AAAKK DLEAWFP    ++ELVSCSNC  YQSR L +R G  ++  ++ ++VH LN+T 
Sbjct: 346 NAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTL 405
Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAP 470
            AT R IC ILE +Q E G+ IP+ LRK++P     E   IP++K  P
Sbjct: 406 SATERTICCILENYQKEDGLVIPEVLRKYIPG----EPEFIPYIKELP 449

>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 532 DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQECDA 578
           D  D+KYLIATSEQPI A H   W   P   LP+RY G S+CFR+E  +
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGS 284

>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455

Iteration: 1
 Score =  203 bits (517), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/199 (52%), Positives = 139/199 (69%), Gaps = 10/199 (5%)
Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
           K E +D YLI T+E P+  +H +  L    LP+ Y+GVS CFR+E G+ G+DT+GIFRVH
Sbjct: 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVH 300
Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF KVEQFV + P  +ESW+  +++I+N+EE + +L I YRVVNI +G L + AAKK D+
Sbjct: 301 QFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDI 358
Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY-GQTKQK------IYATACATTRVICAIL 187
           EAW PG G FRE+VS SNC D+Q+RRL +R+  +T +K      + +TA AT+R I AIL
Sbjct: 359 EAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAIL 418
Query: 188 ETHQTETG-VRIPDCLRKF 205
           E HQ E G VRIP  L K+
Sbjct: 419 ENHQEEDGTVRIPKVLWKY 437

>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455

Iteration: 1
 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 110/153 (71%), Gaps = 5/153 (3%)
Query: 300 ADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSG 359
           A  DT+GIFRVHQF KVEQFV + P  +ESW+  +++I+N+EE + +L I YRVVNI +G
Sbjct: 289 AGKDTKGIFRVHQFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTG 346
Query: 360 ALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN 419
            L + AAKK D+EAW PG G FRE+VS SNC  +Q+RRL +R+    + +EK  +VH LN
Sbjct: 347 DLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRF--RDRTDEKPRYVHTLN 404
Query: 420 ATACATTRVICAILETHQTETG-VRIPDCLRKF 451
           +TA AT+R I AILE HQ E G VRIP  L K+
Sbjct: 405 STAIATSRAIVAILENHQEEDGTVRIPKVLWKY 437

>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEC 576
           K E +D YLI T+E P+  +H +  L    LP+ Y+GVS CFR+E 
Sbjct: 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEA 286

>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425

Iteration: 1
 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 120/198 (60%), Gaps = 10/198 (5%)
Query: 17  ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQF 76
           E D+ YLI T+E P+  ++R+  L E +LPI     + C+R+E G++G+D RGI R HQF
Sbjct: 222 ERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQF 281
Query: 77  EKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEA 136
           +KVE   +  P  D S+  L+++++++EE    LG+ YRVV + +G L  +AAK  D+E 
Sbjct: 282 DKVELVKIVHP--DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEV 339
Query: 137 WFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-------QKIYATACATTRVICAILET 189
           WFP    +RE+ SCSNC D+Q+RR   R+  +K         +  +  A  R + AILE 
Sbjct: 340 WFPSQNKYREISSCSNCEDFQARRXNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILEN 399
Query: 190 HQTETG-VRIPDCLRKFV 206
           +Q E G V +P+ LR +V
Sbjct: 400 YQQEDGSVVVPEVLRDYV 417

>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425

Iteration: 1
 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 92/151 (60%), Gaps = 5/151 (3%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RGI R HQF+KVE   +  P  D S+  L+++++++EE    LG+ YRVV + +G L 
Sbjct: 271 DIRGIIRQHQFDKVELVKIVHP--DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLG 328
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            +AAK  D+E WFP    +RE+ SCSNC  +Q+RR   R+  +K    K  FVH LN + 
Sbjct: 329 FSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRXNTRFKDSK--TGKNRFVHTLNGSG 386
Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFV 452
            A  R + AILE +Q E G V +P+ LR +V
Sbjct: 387 LAVGRTLAAILENYQQEDGSVVVPEVLRDYV 417

>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536

Iteration: 1
 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 7/190 (3%)
Query: 20  DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKV 79
           D YL  T+E  + A+H    LP  +LP+RY G +  FR E GS G+D RG+ RVHQF KV
Sbjct: 328 DLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKV 387
Query: 80  EQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFP 139
           EQ+VLT    + S +   E+++N+EE    L + YR+V + +G +     +++D+E + P
Sbjct: 388 EQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLP 447
Query: 140 GSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKI-YA-----TACATTRVICAILETHQTE 193
             G +RE  SCS  LD+Q+RR  +RY   + ++ YA     TA AT R++  +LE HQ +
Sbjct: 448 SEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQ 507
Query: 194 TG-VRIPDCL 202
            G VR+P  L
Sbjct: 508 DGRVRVPQAL 517

>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536

Iteration: 1
 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RG+ RVHQF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G + 
Sbjct: 374 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 433
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
               +++D+E + P  G +RE  SCS  L +Q+RR  +RY   +    ++ + + LN TA
Sbjct: 434 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 490
Query: 423 CATTRVICAILETHQTETG-VRIPDCL 448
            AT R++  +LE HQ + G VR+P  L
Sbjct: 491 LATPRILAMLLENHQLQDGRVRVPQAL 517

>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421

Iteration: 1
 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 7/190 (3%)
Query: 20  DKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKV 79
           D YL  T+E  + A+H    LP  +LP+RY G +  FR E GS G+D RG+ RVHQF KV
Sbjct: 219 DLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKV 278
Query: 80  EQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFP 139
           EQ+VLT    + S +   E+++N+EE    L + YR+V + +G +     +++D+E + P
Sbjct: 279 EQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLP 338
Query: 140 GSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKI-YA-----TACATTRVICAILETHQTE 193
             G +RE  SCS  LD+Q+RR  +RY   + ++ YA     TA AT R++  +LE HQ +
Sbjct: 339 SEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQ 398
Query: 194 TG-VRIPDCL 202
            G VR+P  L
Sbjct: 399 DGRVRVPQAL 408

>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421

Iteration: 1
 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RG+ RVHQF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G + 
Sbjct: 265 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 324
Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
               +++D+E + P  G +RE  SCS  L +Q+RR  +RY   +    ++ + + LN TA
Sbjct: 325 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 381
Query: 423 CATTRVICAILETHQTETG-VRIPDCL 448
            AT R++  +LE HQ + G VR+P  L
Sbjct: 382 LATPRILAMLLENHQLQDGRVRVPQAL 408

>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501

Iteration: 1
 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 8/214 (3%)
Query: 18  LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFE 77
            +D  L  T+E  +     D  +    LPIR +  STC+R E  + G++  G++RVH F 
Sbjct: 274 FEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRVHHFT 332
Query: 78  KVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAW 137
           KVE F +T P  ++S ++L+E +    E   +LG+ +RV+++ +  L   A +K D+EAW
Sbjct: 333 KVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAW 392
Query: 138 FPGSGAFRELVSCSNCLDYQSRRLLVRYG------QTKQKIYATACATTRVICAILETHQ 191
            PG G F E+ S SNC D+QSRRL + +       Q    + AT CA  R++ A+LE++Q
Sbjct: 393 MPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALLESYQ 452
Query: 192 TETG-VRIPDCLRKFVPAVYLNEAGEIPFVKTAP 224
            + G V +P  L+ ++    +     +P     P
Sbjct: 453 QKDGSVLVPPALQPYLGTDRITTPTHVPLQYIGP 486

>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501

Iteration: 1
 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 107/185 (57%), Gaps = 8/185 (4%)
Query: 291 MIQNSEEFYADLDTR----GIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD 346
           M+ +S  + A+ DT     G++RVH F KVE F +T P  ++S + L+E +    E   +
Sbjct: 305 MVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTE 364
Query: 347 LGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTK 406
           LG+ +RV+++ +  L   A +K D+EAW PG G F E+ S SNC  +QSRRL + + QT+
Sbjct: 365 LGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF-QTE 423
Query: 407 KMNEKIEFVHMLNATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPF 465
               +++F H +NAT CA  R++ A+LE++Q + G V +P  L+ ++    +     +P 
Sbjct: 424 A--GELQFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPTHVPL 481
Query: 466 VKTAP 470
               P
Sbjct: 482 QYIGP 486

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1083
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	1e-120
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	7e-95
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	2e-17
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	1e-114
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	3e-91
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	2e-15
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	1e-113
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	5e-86
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	7e-17
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	4e-80
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	9e-59
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	2e-12
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	7e-72
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	7e-57
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	2e-10
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	2e-70
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	1e-53
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	4e-09
3err_A	536	Fusion protein of microtubule binding domain from	2e-68
3err_A	536	Fusion protein of microtubule binding domain from	2e-51
3err_A	536	Fusion protein of microtubule binding domain from	6e-09
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	2e-57
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	1e-42
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	2e-07
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	4e-44
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	6e-34
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	1e-37
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	9e-25
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	2e-05
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	6e-15
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	3e-05
2yt5_A	66	Metal-response element-binding transcription facto	1e-11
2yt5_A	66	Metal-response element-binding transcription facto	1e-05
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	6e-11
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	5e-05
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	4e-09
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	1e-04
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	3e-04
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	3e-08
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	3e-08
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	3e-08
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	6e-08
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	8e-08
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	2e-07
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	3e-07
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	2e-06
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	1e-05
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	2e-05
1wee_A	72	PHD finger family protein; structural genomics, PH	2e-05
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	3e-05
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	3e-05
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	4e-05
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	8e-05
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	5e-05
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	2e-04
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	3e-04
1ati_A	505	Glycyl-tRNA synthetase; protein biosynthesis, liga	3e-04
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	3e-04

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522

 Score =  380 bits (977), Expect = e-120
 Identities = 159/251 (63%), Positives = 191/251 (76%), Gaps = 16/251 (6%)

Query: 4   KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSH 63
           K    G    + +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQEVGSH
Sbjct: 249 KVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSH 308

Query: 64  GRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGA 123
           GRDTRGIFRVHQFEK+EQFV +SPHD++SW+M +EMI  +EEFY  LGI Y +VNIVSG+
Sbjct: 309 GRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGS 368

Query: 124 LNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ----KIY-----A 174
           LNHAA+KKLDLEAWFPGSGAFRELVSCSNC DYQ+RRL +RYGQTK+      +     A
Sbjct: 369 LNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNA 428

Query: 175 TACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGE--IPFVKTAPIDEEETKK 232
           T CATTR ICAILE +QTE G+ +P+ L++     ++    +  IPFVK API++E +KK
Sbjct: 429 TMCATTRTICAILENYQTEKGITVPEKLKE-----FMPPGLQELIPFVKPAPIEQEPSKK 483

Query: 233 QKKQKEGMKKK 243
           QKKQ EG KKK
Sbjct: 484 QKKQHEGSKKK 494

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522

 Score =  310 bits (797), Expect = 7e-95
 Identities = 132/198 (66%), Positives = 159/198 (80%), Gaps = 3/198 (1%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DTRGIFRVHQFEK+EQFV +SPHD++SW+  +EMI  +EEFY  LGI Y +VNIVSG+LN
Sbjct: 311 DTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLN 370

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           HAA+KKLDLEAWFPGSGAFRELVSCSNC  YQ+RRL +RYGQTKKM +K+EFVHMLNAT 
Sbjct: 371 HAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATM 430

Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQ 482
           CATTR ICAILE +QTE G+ +P+ L++F+P         IPFVK API++E +KKQKKQ
Sbjct: 431 CATTRTICAILENYQTEKGITVPEKLKEFMPPGLQE---LIPFVKPAPIEQEPSKKQKKQ 487

Query: 483 KEGMKKKVLIDEAMIQNE 500
            EG KKK    +  ++N 
Sbjct: 488 HEGSKKKAAARDVTLENR 505

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 516 EVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQE 575
           E + K    G    + +  D+KYLIATSEQPI A+HRD WL    LPI+Y G+STCFRQE
Sbjct: 245 EELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQE 304

Query: 576 CDAG 579
              G
Sbjct: 305 --VG 306

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485

 Score =  362 bits (932), Expect = e-114
 Identities = 127/234 (54%), Positives = 150/234 (64%), Gaps = 17/234 (7%)

Query: 16  DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
           D  D+KYLIATSEQPI A H   W   P   LP+RY G S+CFR+E GSHG+D  GIFRV
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRV 295

Query: 74  HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
           H FEK+EQFVLT P    SW+  D MI  SEEFY  LG+ YRVV IVSG LN+AAAKK D
Sbjct: 296 HAFEKIEQFVLTEPEK--SWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYD 353

Query: 134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQ----KIY-----ATACATTRVIC 184
           LEAWFP    ++ELVSCSNC DYQSR L +R G  +Q    K Y     +T  AT R IC
Sbjct: 354 LEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTIC 413

Query: 185 AILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKE 238
            ILE +Q E G+ IP+ LRK++P     E   IP++K  P +    KK K +  
Sbjct: 414 CILENYQKEDGLVIPEVLRKYIP----GEPEFIPYIKELPKNTTSVKKAKGKNP 463

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485

 Score =  299 bits (769), Expect = 3e-91
 Identities = 97/197 (49%), Positives = 120/197 (60%), Gaps = 9/197 (4%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D  GIFRVH FEK+EQFVLT P    SW+  D MI  SEEFY  LG+ YRVV IVSG LN
Sbjct: 288 DAWGIFRVHAFEKIEQFVLTEPEK--SWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELN 345

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           +AAAKK DLEAWFP    ++ELVSCSNC  YQSR L +R G  ++  ++ ++VH LN+T 
Sbjct: 346 NAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTL 405

Query: 423 CATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQ 482
            AT R IC ILE +Q E G+ IP+ LRK++P         IP++K  P +    KK K +
Sbjct: 406 SATERTICCILENYQKEDGLVIPEVLRKYIPGEPE----FIPYIKELPKNTTSVKKAKGK 461

Query: 483 K---EGMKKKVLIDEAM 496
                   KK       
Sbjct: 462 NPKNTTSVKKAKGKNGS 478

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485

 Score = 79.6 bits (197), Expect = 2e-15
 Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 532 DELDDKYLIATSEQPICAVHRDSWL--PEASLPIRYLGVSTCFRQECDAG 579
           D  D+KYLIATSEQPI A H   W   P   LP+RY G S+CFR+E  AG
Sbjct: 236 DGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRRE--AG 283

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484

 Score =  359 bits (923), Expect = e-113
 Identities = 125/232 (53%), Positives = 148/232 (63%), Gaps = 17/232 (7%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
             + D KYLIATSE PI A HR  W  E   P++Y G+STCFR+E G+HGRDT GIFRVH
Sbjct: 258 SGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVH 317

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF+K+EQFV+ SP  +ESW+ L++MI  SEEF   LG+ YRVVNI SGALN+AAAKK DL
Sbjct: 318 QFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDL 377

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYA------------TACATTRV 182
           EAWFP SGAFRELVSCSNC DYQS+ +  RYG   +   A            T CA TR 
Sbjct: 378 EAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRT 437

Query: 183 ICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQK 234
           +C I E +QTE GV IPD LR      Y+     I F   A  +     K +
Sbjct: 438 MCCICENYQTEEGVVIPDVLRP-----YMMGIEMIRFENNAQAEGTTPDKGE 484

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484

 Score =  285 bits (732), Expect = 5e-86
 Identities = 98/181 (54%), Positives = 119/181 (65%), Gaps = 8/181 (4%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DT GIFRVHQF+K+EQFV+ SP  +ESW+ L++MI  SEEF   LG+ YRVVNI SGALN
Sbjct: 309 DTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALN 368

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYG---QTKKMNEKIEFVHMLN 419
           +AAAKK DLEAWFP SGAFRELVSCSNC  YQS+ +  RYG   +        E+ HMLN
Sbjct: 369 NAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLN 428

Query: 420 ATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQ 479
            T CA TR +C I E +QTE GV IPD LR ++  + +     I F   A  +     K 
Sbjct: 429 GTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEM-----IRFENNAQAEGTTPDKG 483

Query: 480 K 480
           +
Sbjct: 484 E 484

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484

 Score = 83.9 bits (208), Expect = 7e-17
 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
             + D KYLIATSE PI A HR  W  E   P++Y G+STCFR+E  AG
Sbjct: 258 SGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKE--AG 304

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455

 Score =  268 bits (688), Expect = 4e-80
 Identities = 106/215 (49%), Positives = 138/215 (64%), Gaps = 15/215 (6%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
           K E +D YLI T+E P+  +H +  L    LP+ Y+GVS CFR+E G+ G+DT+GIFRVH
Sbjct: 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVH 300

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF KVEQFV + P  +ESW+  +++I+N+EE + +L I YRVVNI +G L + AAKK D+
Sbjct: 301 QFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDI 358

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY---GQTKQKIYAT----ACATTRVICAIL 187
           EAW PG G FRE+VS SNC D+Q+RRL +R+      K +   T    A AT+R I AIL
Sbjct: 359 EAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAIL 418

Query: 188 ETHQTETG-VRIPDCLRKFVPAVYLNEAGEIPFVK 221
           E HQ E G VRIP  L K     Y      +P  K
Sbjct: 419 ENHQEEDGTVRIPKVLWK-----YTGFKEIVPVEK 448

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455

 Score =  208 bits (532), Expect = 9e-59
 Identities = 84/150 (56%), Positives = 109/150 (72%), Gaps = 5/150 (3%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           DT+GIFRVHQF KVEQFV + P  +ESW+  +++I+N+EE + +L I YRVVNI +G L 
Sbjct: 292 DTKGIFRVHQFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLG 349

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
           + AAKK D+EAW PG G FRE+VS SNC  +Q+RRL +R+    + +EK  +VH LN+TA
Sbjct: 350 YVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRF--RDRTDEKPRYVHTLNSTA 407

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
            AT+R I AILE HQ E G VRIP  L K+
Sbjct: 408 IATSRAIVAILENHQEEDGTVRIPKVLWKY 437

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
           K E +D YLI T+E P+  +H +  L    LP+ Y+GVS CFR+E  AG
Sbjct: 241 KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKE--AG 287

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501

 Score =  247 bits (632), Expect = 7e-72
 Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 8/200 (4%)

Query: 14  EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRV 73
           +    +D  L  T+E  +     D  +    LPIR +  STC+R E  + G++  G++RV
Sbjct: 270 DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRV 328

Query: 74  HQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLD 133
           H F KVE F +T P  ++S ++L+E +    E   +LG+ +RV+++ +  L   A +K D
Sbjct: 329 HHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFD 388

Query: 134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIY------ATACATTRVICAIL 187
           +EAW PG G F E+ S SNC D+QSRRL + +     ++       AT CA  R++ A+L
Sbjct: 389 IEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALL 448

Query: 188 ETHQTETG-VRIPDCLRKFV 206
           E++Q + G V +P  L+ ++
Sbjct: 449 ESYQQKDGSVLVPPALQPYL 468

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501

 Score =  204 bits (521), Expect = 7e-57
 Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           +  G++RVH F KVE F +T P  ++S + L+E +    E   +LG+ +RV+++ +  L 
Sbjct: 321 EPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELG 380

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
             A +K D+EAW PG G F E+ S SNC  +QSRRL + +   +    +++F H +NAT 
Sbjct: 381 LPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF---QTEAGELQFAHTVNATG 437

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPFVKTAP 470
           CA  R++ A+LE++Q + G V +P  L+ ++    +     +P     P
Sbjct: 438 CAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPTHVPLQYIGP 486

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 530 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
           +    +D  L  T+E  +     D  +    LPIR +  STC+R E D G
Sbjct: 270 DPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTG 319

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421

 Score =  240 bits (615), Expect = 2e-70
 Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 7/199 (3%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
                D YL  T+E  + A+H    LP  +LP+RY G +  FR E GS G+D RG+ RVH
Sbjct: 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVH 273

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G +     +++D+
Sbjct: 274 QFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDI 333

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYAT----ACATTRVICAILE 188
           E + P  G +RE  SCS  LD+Q+RR  +RY   + + +   T    A AT R++  +LE
Sbjct: 334 EVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLE 393

Query: 189 THQTETG-VRIPDCLRKFV 206
            HQ + G VR+P  L  ++
Sbjct: 394 NHQLQDGRVRVPQALIPYM 412

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421

 Score =  192 bits (491), Expect = 1e-53
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RG+ RVHQF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G + 
Sbjct: 265 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 324

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
               +++D+E + P  G +RE  SCS  L +Q+RR  +RY   +    ++ + + LN TA
Sbjct: 325 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 381

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFV 452
            AT R++  +LE HQ + G VR+P  L  ++
Sbjct: 382 LATPRILAMLLENHQLQDGRVRVPQALIPYM 412

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421

 Score = 59.1 bits (144), Expect = 4e-09
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
                D YL  T+E  + A+H    LP  +LP+RY G +  FR E  AG
Sbjct: 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSE--AG 260

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536

 Score =  238 bits (609), Expect = 2e-68
 Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 7/199 (3%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
                D YL  T+E  + A+H    LP  +LP+RY G +  FR E GS G+D RG+ RVH
Sbjct: 323 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVH 382

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G +     +++D+
Sbjct: 383 QFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDI 442

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYAT----ACATTRVICAILE 188
           E + P  G +RE  SCS  LD+Q+RR  +RY   + + +   T    A AT R++  +LE
Sbjct: 443 EVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLE 502

Query: 189 THQTETG-VRIPDCLRKFV 206
            HQ + G VR+P  L  ++
Sbjct: 503 NHQLQDGRVRVPQALIPYM 521

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536

 Score =  189 bits (482), Expect = 2e-51
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RG+ RVHQF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G + 
Sbjct: 374 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 433

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
               +++D+E + P  G +RE  SCS  L +Q+RR  +RY   +    ++ + + LN TA
Sbjct: 434 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 490

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKFV 452
            AT R++  +LE HQ + G VR+P  L  ++
Sbjct: 491 LATPRILAMLLENHQLQDGRVRVPQALIPYM 521

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536

 Score = 58.9 bits (143), Expect = 6e-09
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
                D YL  T+E  + A+H    LP  +LP+RY G +  FR E  AG
Sbjct: 323 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSE--AG 369

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425

 Score =  203 bits (520), Expect = 2e-57
 Identities = 79/199 (39%), Positives = 122/199 (61%), Gaps = 10/199 (5%)

Query: 15  KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH 74
           K E D+ YLI T+E P+  ++R+  L E +LPI     + C+R+E G++G+D RGI R H
Sbjct: 220 KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQH 279

Query: 75  QFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL 134
           QF+KVE   +  P  D S+  L+++++++EE    LG+ YRVV + +G L  +AAK  D+
Sbjct: 280 QFDKVELVKIVHP--DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDI 337

Query: 135 EAWFPGSGAFRELVSCSNCLDYQSRRLLVRY--GQTKQKIYA-----TACATTRVICAIL 187
           E WFP    +RE+ SCSNC D+Q+RR+  R+   +T +  +      +  A  R + AIL
Sbjct: 338 EVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL 397

Query: 188 ETHQTETG-VRIPDCLRKF 205
           E +Q E G V +P+ LR +
Sbjct: 398 ENYQQEDGSVVVPEVLRDY 416

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425

 Score =  160 bits (408), Expect = 1e-42
 Identities = 64/150 (42%), Positives = 92/150 (61%), Gaps = 5/150 (3%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RGI R HQF+KVE   +  P  D S+  L+++++++EE    LG+ YRVV + +G L 
Sbjct: 271 DIRGIIRQHQFDKVELVKIVHP--DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLG 328

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
            +AAK  D+E WFP    +RE+ SCSNC  +Q+RR+  R+  +K    K  FVH LN + 
Sbjct: 329 FSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSK--TGKNRFVHTLNGSG 386

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
            A  R + AILE +Q E G V +P+ LR +
Sbjct: 387 LAVGRTLAAILENYQQEDGSVVVPEVLRDY 416

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 531 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAG 579
           K E D+ YLI T+E P+  ++R+  L E +LPI     + C+R+E  AG
Sbjct: 220 KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRRE--AG 266

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346

 Score =  162 bits (412), Expect = 4e-44
 Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 27/214 (12%)

Query: 7   KVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRD 66
             G          D  L   +  P+  +            +R+   + CFR+E       
Sbjct: 130 DAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPK-GGLRFDVAADCFRREPS----- 183

Query: 67  TRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVN-------- 118
            + + R+  F   E   + +P  D+     +  +  ++    DLG+ +RV          
Sbjct: 184 -KHLDRLQSFRMREYVCIGTP--DDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGR 240

Query: 119 --IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYA-T 175
              +          K +L             +S +   ++      ++    +    A T
Sbjct: 241 VGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGE---PAHT 297

Query: 176 AC---ATTRVICAILETHQTETGVRIPDCLRKFV 206
            C      R+  A+  TH T+     P  +R  +
Sbjct: 298 GCVAFGMDRLAVAMFHTHGTDLS-AWPAKVRDIL 330

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346

 Score =  133 bits (335), Expect = 6e-34
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 21/159 (13%)

Query: 304 TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVN-------- 355
           ++ + R+  F   E   + +P  D+     +  +  ++    DLG+ +RV          
Sbjct: 183 SKHLDRLQSFRMREYVCIGTP--DDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGR 240

Query: 356 --IVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIE 413
              +          K +L             +S +    +      ++           E
Sbjct: 241 VGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANG-------E 293

Query: 414 FVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFV 452
             H     A    R+  A+  TH T+     P  +R  +
Sbjct: 294 PAHT-GCVAFGMDRLAVAMFHTHGTDLS-AWPAKVRDIL 330

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522

 Score =  148 bits (374), Expect = 1e-37
 Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 26/221 (11%)

Query: 4   KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQEVGS 62
             E       EK       +      P         LP   +P++    S T  R E G 
Sbjct: 302 THEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG 361

Query: 63  HGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYAD-LGIAYRVVNI-- 119
                 GI RV +F ++E   + +   +E  K  +E+       + D L I +R   +  
Sbjct: 362 I----HGIERVDEFHRIEIVWIGTK--EEVLKCAEELHDRYMHIFNDILDIEWRKARVTP 415

Query: 120 -------VSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLDYQSRRLLVRYGQTK 169
                  + G          D EA  P     G + E  + S   D   +   V+   + 
Sbjct: 416 WFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQ-SG 474

Query: 170 QKIYATAC---ATTRVICAILETHQTETGVRIPDCLRKFVP 207
            +++ + C      R     L     +     P+  R  V 
Sbjct: 475 DELW-SGCSGVGLERWAAVFLAQKGLDPA-NWPEEFRNRVG 513

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522

 Score =  109 bits (272), Expect = 9e-25
 Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 24/162 (14%)

Query: 305 RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD-LGIAYRVVNI------- 356
            GI RV +F ++E   + +   +E  K  +E+       + D L I +R   +       
Sbjct: 363 HGIERVDEFHRIEIVWIGTK--EEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFMAQ 420

Query: 357 --VSGALNHAAAKKLDLEAWFP---GSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEK 411
             + G          D EA  P     G + E  + S       +   V+        + 
Sbjct: 421 EGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKL-------QS 473

Query: 412 IEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVP 453
            + +     +     R     L     +     P+  R  V 
Sbjct: 474 GDELW-SGCSGVGLERWAAVFLAQKGLDPA-NWPEEFRNRVG 513

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 25/182 (13%), Positives = 43/182 (23%), Gaps = 38/182 (20%)

Query: 520 KGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVS-TCFRQECDA 578
             E       EK       +      P         LP   +P++    S T  R E   
Sbjct: 302 THEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG 361

Query: 579 --GMCRTY------FHVTC------AQREGLLSEATSE---------EVDQADPFYAHCR 615
             G+ R                      E L                   +  P++    
Sbjct: 362 IHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFMAQ- 420

Query: 616 LHADKLEDFSKFSKILVC--CVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLI 673
              + L   ++ + +       CL  R  D  E +E  +         I  +     F +
Sbjct: 421 ---EGLLGLAEENTVGTTDYEACLPYRGPD-GEWLEFQNV-------SINGDKYPKGFNV 469

Query: 674 RY 675
           + 
Sbjct: 470 KL 471

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88

 Score = 70.4 bits (172), Expect = 6e-15
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
           VC +C+   S + N I+ CD C + VH+ CYGV                 W C  C    
Sbjct: 27  VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP----------YIPEGQWLCRHCLQSR 76

Query: 753 AEPTCELCPN 762
           A P  E   +
Sbjct: 77  ARPALEHHHH 86

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVH 658
           VC +C+   S + N I+ CD C + VH
Sbjct: 27  VCSICMDGESQNSNVILFCDMCNLAVH 53

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
            VC +C  E S+  NE+V CD CG   H+ C+     +S+       S E W C  C   
Sbjct: 7   GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSV-----IDSDEKWLCRQCVFA 61

Query: 752 IA 753
             
Sbjct: 62  TT 63

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 631 LVCCVCLGERSDDVNEIVECDSCGVTVH 658
            VC +C  E S+  NE+V CD CG   H
Sbjct: 7   GVCTICQEEYSEAPNEMVICDKCGQGYH 34

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71

 Score = 58.4 bits (141), Expect = 6e-11
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI 752
           VC +C+   S + N I+ CD C + VH+ CYGV                 W C  C    
Sbjct: 18  VCSICMDGESQNSNVILFCDMCNLAVHQECYGVP----------YIPEGQWLCRHCLQSR 67

Query: 753 AEP 755
           A P
Sbjct: 68  ARP 70

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVH 658
           VC +C+   S + N I+ CD C + VH
Sbjct: 18  VCSICMDGESQNSNVILFCDMCNLAVH 44

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 53.5 bits (128), Expect = 4e-09
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
           L C VC        N++VEC  C    H+ C+  Q    ++    +     W+C  C 
Sbjct: 17  LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQ----VTDKEVNDPRLVWYCARCT 70

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 631 LVCCVCLGERSDDVNEIVECDSCGVTVH 658
           L C VC        N++VEC  C    H
Sbjct: 17  LACVVCRQMTVASGNQLVECQECHNLYH 44

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 1040 CGLCHLSHDPHT--MAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083
            C +C          + +C  CH  YH  C  P +         + W
Sbjct: 19   CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
                   C LC    DP     CD C + +H+ CLDPPL  +P +
Sbjct: 22   RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 66

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            +C +C    +   +  CD C+  +HL CL P L  +P 
Sbjct: 2    RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD 39

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
                   C LC    DP     CD C + +H+ CLDPPL  +P +
Sbjct: 14   RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 58

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
                S  C +C   H+P+    CD C++ YH+ CL+PPL ++P+
Sbjct: 22   KKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPE 65

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226

 Score = 53.2 bits (127), Expect = 8e-08
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
                   C LC    DP     CD C + +H+ CLDPPL  +P +
Sbjct: 170  RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSE 214

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            C +C    +   +  CD C   YH+ CL PPL  +P+
Sbjct: 19   CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPR 55

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            C LC  S +   +  CD C   YH+ CL+PP+   P+
Sbjct: 61   CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPE 97

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 24/124 (19%)

Query: 632 VCCVCLG-----ERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFS 686
            C  CLG     ++S    E+V C  CG + H   +Q      + +  Y   W  +E   
Sbjct: 3   YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYK--WQCIECK- 59

Query: 687 KFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCE 746
                  C +C    S++ ++++ CD C    H  C        ++  V+      W C 
Sbjct: 60  ------SCILC--GTSENDDQLLFCDDCDRGYHMYC--------LNPPVAEPPEGSWSCH 103

Query: 747 SCRA 750
            C  
Sbjct: 104 LCWE 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 5e-07
 Identities = 66/519 (12%), Positives = 141/519 (27%), Gaps = 154/519 (29%)

Query: 289 DEMIQNSEEFYADLD-------TRGIFRVHQFEKVEQFVLTSPHDDES-----WKTLDEM 336
           D +    + F  + D        + I    + +     ++ S           W  L + 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQ 75

Query: 337 IQNSEEFYAD-LGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQS 395
            +  ++F  + L I Y+ +              +  E   P S   R  +   + L Y  
Sbjct: 76  EEMVQKFVEEVLRINYKFL-----------MSPIKTEQRQP-SMMTRMYIEQRDRL-YND 122

Query: 396 RRLLVRYGQT-KKMNEKIE------------FVH-M-------LNATACATTRVICAI-- 432
            ++  +Y  +  +   K+              +  +       +    C + +V C +  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 433 ----LETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKK--QKEGM 486
               L      +   + + L+K +  +  N            +     + + +   K   
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 487 KKKVLI--DEAMIQNEKD----------LIATEKERNNAL---------REVIGKGEKVG 525
            +  L+      +QN K           L+ T   R   +           +      + 
Sbjct: 243 YENCLLVLLN--VQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297

Query: 526 DSAPEKDELDDKYL-IATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCR-- 582
            +  E   L  KYL     +           LP   L      +S    +    G+    
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD-----------LPREVLTTNPRRLSI-IAESIRDGLATWD 345

Query: 583 TYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLHADKLEDFSKFSKI---LVCCVCLGE 639
            + HV C +    L+      ++  +P  A  R   D+L  F   + I   L+  +    
Sbjct: 346 NWKHVNCDK----LTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 640 RSDDVNEIV---------ECDSCG--VTVH----EVKIQQEFLA---IKFLIRYLL---- 677
              DV  +V         E       +++     E+K++ E         +  Y +    
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 678 --------------FWF---------QLEDFSKFSKILV 693
                         +             E  + F  + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-05
 Identities = 105/655 (16%), Positives = 199/655 (30%), Gaps = 190/655 (29%)

Query: 444  IPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKK-----QKKQKEGMKKKVLIDEAMIQ 498
            + D  +    ++   E  EI  +  +      T +       KQ+E ++K   ++E +  
Sbjct: 38   VQDMPK----SILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRI 89

Query: 499  NEKDL---IATE-KERNNALREVIGKGEKVGDSAPEKDELDDKYLIATSEQPICAVHRDS 554
            N K L   I TE ++ +   R  I + +++ +       +  KY + +  QP   + +  
Sbjct: 90   NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNV-SRLQPYLKLRQ-- 142

Query: 555  WLPEASLPIRYLGVSTCFRQECDAGM--CRTYFHVTCAQREG---LLSEA-TSEEVDQAD 608
             L E   P + + +          G+               G   +  +   S +V    
Sbjct: 143  ALLELR-PAKNVLID---------GVLGS------------GKTWVALDVCLSYKVQCKM 180

Query: 609  PF------YAHCRLHADKLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKI 662
             F        +C      LE   K    +        RSD               H   I
Sbjct: 181  DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT--SRSD---------------HSSNI 223

Query: 663  QQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVN--EIVEC-D-SCGVTV 718
            +    +I+  +R LL     E+         C + L     +V   +     + SC + +
Sbjct: 224  KLRIHSIQAELRRLLKSKPYEN---------CLLVL----LNVQNAKAWNAFNLSCKILL 270

Query: 719  HEGCYGVQDT---ASISSTVSSCSTEPWFCESCRAGIAEP-TCELCPNF---GENHLR-- 769
                     T     ++  +S+ +T     +     +       L   +       L   
Sbjct: 271  ---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 770  ---------GLF-ENIKNGHAQRDRMRYHAC-HLRDSRDSS------DGDRG-----GIF 807
                      +  E+I++G A  D  ++  C  L    +SS         R       +F
Sbjct: 322  VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 808  KETDVGKWVHLVCALYIPGVAFGEVDRLSNVTLFEMPYSRWGAKSCALCPD--ESYARTE 865
                           +IP         LS +         W     +          +  
Sbjct: 382  PP-SA----------HIP------TILLSLI---------WFDVIKSDVMVVVNKLHKYS 415

Query: 866  LALQSPPVNCVPTLLVYMEVVFPQPPQRKL-----GKYKV-KYVDMKSLRNPPWVPT--- 916
            L  + P  + +    +Y+E+      +  L       Y + K  D   L  PP++     
Sbjct: 416  LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFY 474

Query: 917  QKLARPLTS-----SATLCRALLHKARLMEV----DTGAVAQAQSDLATLADMNK-KWHI 966
              +   L +       TL R +    R +E     D+ A   + S L TL  +   K +I
Sbjct: 475  SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 967  PLAFN-----VEFVAYFLNRNGR---LGKLTR-EQRALAVENDSLQSEQSR-LQK 1011
                      V  +  FL +        K T   + AL  E++++  E  + +Q+
Sbjct: 535  CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 1023 FPQPPLSKQAW-GVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077
                PL +  W       C  C  S +   M  CDTC   YH  CL P +  +P  
Sbjct: 39   IAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTN 94

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 30/133 (22%)

Query: 632 VCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKI 691
            C VC  +   D+ +   C +CG   H              +   +   +   +      
Sbjct: 9   NCAVC--DSPGDLLDQFFCTTCGQHYH-----------GMCLDIAVTPLKRAGWQCPECK 55

Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG 751
            VC  C  ++S + ++++ CD+C    H  C        +   + S  T  W C++CR  
Sbjct: 56  -VCQNC--KQSGEDSKMLVCDTCDKGYHTFC--------LQPVMKSVPTNGWKCKNCRI- 103

Query: 752 IAEPTCELCPNFG 764
                C   P+ G
Sbjct: 104 -----CISGPSSG 111

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
              C +C    D      C TC  +YH  CLD  +  + +
Sbjct: 8    ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKR 46

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 695 CVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
           C C G + DD   ++ CD CGV  H  C G+ +  ++           + C  C 
Sbjct: 19  CKC-GTKDDDGERMLACDGCGVWHHTRCIGINNADAL--------PSKFLCFRCI 64

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 1042 LCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
             C +      +  CDTC   YHL CLDPPL  +PK
Sbjct: 11   FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPK 45

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
               C +      +  CDTC   YHL CLDPPL  +PK
Sbjct: 5    EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPK 41

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 26/125 (20%)

Query: 632 VCCVCLGE----RSDDVNEIVECDSCGVTVHE--VKIQQEFLAIKFLIRYLLFWFQLEDF 685
           +C  CLG     R     E++ C  CG + H   +K   E               +++  
Sbjct: 7   ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTV------------RVKAL 54

Query: 686 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFC 745
                    C    ++  + + ++ CDSC    H  C            ++      W C
Sbjct: 55  RWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMEC--------CDPPLTRMPKGMWIC 106

Query: 746 ESCRA 750
           + CR 
Sbjct: 107 QICRP 111

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 1038 HKCGLCHL-SHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
              C  C     +   M  CD+C   +H+ C DPPL RMPK
Sbjct: 62   KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK 101

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
              +C +   P  +  C+ C   +HL C  P L  +P 
Sbjct: 25   ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG 61

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            H    C +  D   +  CDTC   YH+ CL+PPL  +P 
Sbjct: 7    HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPN 45

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 1042 LCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
             C +      +  CDTC   YH+ CLDP + + P+
Sbjct: 13   YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPE 47

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 53/288 (18%), Positives = 82/288 (28%), Gaps = 65/288 (22%)

Query: 13  PEKDELDDKYLIATSEQPICA----VHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTR 68
           P        YL   + Q I      V   +      L      +   FR E+        
Sbjct: 175 PRGGRGLLAYLRPETAQGIFVNFKNVLDATSRK---LGFGIAQIGKAFRNEITPR----N 227

Query: 69  GIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIA---YRVVNIVSGALN 125
            IFRV +FE++E      P +DE W      ++   +++ ++G++            +  
Sbjct: 228 FIFRVREFEQMEIEYFVRPGEDEYWH--RYWVEERLKWWQEMGLSRENLVPYQQPPESSA 285

Query: 126 HAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICA 185
           H A   +D+   FP      EL   +   D+    L       +                
Sbjct: 286 HYAKATVDILYRFPHG--SLELEGIAQRTDFD---LGSHTKDQEALGITARVLRNEHSTQ 340

Query: 186 ILETHQTETGVRIPDCLRKFVPAVY-------------LNEA--------GEIPFVKTAP 224
            L     ETG       + FVP V              L EA        GE   V    
Sbjct: 341 RLAYRDPETG-------KWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLK 393

Query: 225 IDEEETK-------KQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRV 265
                 K       K + +     K+L   L +          G+ RV
Sbjct: 394 PQLAPIKVAVIPLVKNRPEITEYAKRLKARLLA---------LGLGRV 432

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            C +C    D   +  CD C   +HLACL PPL  +P 
Sbjct: 11   CAVCR---DGGELICCDGCPRAFHLACLSPPLREIPS 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1083
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	100.0
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	100.0
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	100.0
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	100.0
3err_A	536	Fusion protein of microtubule binding domain from	100.0
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	100.0
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	100.0
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	100.0
3err_A	536	Fusion protein of microtubule binding domain from	100.0
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	100.0
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	100.0
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	100.0
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	100.0
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	100.0
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	100.0
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	100.0
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	100.0
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	100.0
3ial_A	518	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	100.0
1nj1_A	501	PROR, proline-tRNA synthetase, proline--tRNA ligas	99.97
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	99.97
4hvc_A	519	Bifunctional glutamate/proline--tRNA ligase; ligas	99.97
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	99.97
1nj1_A	501	PROR, proline-tRNA synthetase, proline--tRNA ligas	99.95
3ial_A	518	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.95
4hvc_A	519	Bifunctional glutamate/proline--tRNA ligase; ligas	99.94
1nj8_A	459	Proline-tRNA synthetase, proline--tRNA ligase; cla	99.94
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	99.93
1hc7_A	477	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.92
3ikl_A	459	DNA polymerase subunit gamma-2, mitochondrial; tra	99.9
2i4l_A	458	Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud	99.89
3ikl_A	459	DNA polymerase subunit gamma-2, mitochondrial; tra	99.88
1ati_A	505	Glycyl-tRNA synthetase; protein biosynthesis, liga	99.86
3uh0_A	460	Threonyl-tRNA synthetase, mitochondrial; threonine	99.83
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.82
1evl_A	401	Threonyl-tRNA synthetase; amino acid recognition,	99.81
1nj8_A	459	Proline-tRNA synthetase, proline--tRNA ligase; cla	99.8
1g5h_A	454	Mitochondrial DNA polymerase accessory subunit; in	99.78
1ati_A	505	Glycyl-tRNA synthetase; protein biosynthesis, liga	99.76
1hc7_A	477	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.76
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.71
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.67
3a32_A	471	Probable threonyl-tRNA synthetase 1; aeropyrum per	99.63
1evl_A	401	Threonyl-tRNA synthetase; amino acid recognition,	99.55
1g5h_A	454	Mitochondrial DNA polymerase accessory subunit; in	99.55
3uh0_A	460	Threonyl-tRNA synthetase, mitochondrial; threonine	99.51
2i4l_A	458	Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud	99.42
2zt5_A	693	Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP	99.35
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.33
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	99.32
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	99.25
1qe0_A	420	Histidyl-tRNA synthetase; class II tRNA synthetase	99.04
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.97
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	98.93
3a32_A	471	Probable threonyl-tRNA synthetase 1; aeropyrum per	98.86
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	98.84
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	98.84
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	98.83
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	98.83
1h4v_B	421	Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA	98.81
1wu7_A	434	Histidyl-tRNA synthetase; ligase, structural genom	98.79
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	98.78
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	98.75
1htt_A	423	Histidyl-tRNA synthetase; complex (tRNA synthetase	98.73
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.67
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	98.66
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	98.62
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.61
3dsq_A	288	Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t	98.58
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	98.56
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.54
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	98.54
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	98.54
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	98.53
4e51_A	467	Histidine--tRNA ligase; seattle structural genomic	98.52
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.51
2yt5_A	66	Metal-response element-binding transcription facto	98.51
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	98.51
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	98.47
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	98.46
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	98.45
2yt5_A	66	Metal-response element-binding transcription facto	98.37
1z7m_A	344	ATP phosphoribosyltransferase regulatory subunit;	98.29
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	98.2
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.16
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	98.15
2zt5_A	693	Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP	98.1
3rac_A	373	Histidine-tRNA ligase; structural genomics, PSI-bi	98.09
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	98.06
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	98.04
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	98.03
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	98.02
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	98.02
3od1_A	400	ATP phosphoribosyltransferase regulatory subunit;	97.96
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	97.93
3lc0_A	456	Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t	97.92
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	97.91
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	97.89
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	97.87
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	97.86
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	97.85
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	97.84
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	97.83
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	97.82
4g84_A	464	Histidine--tRNA ligase, cytoplasmic; synthetase; 2	97.8
3qtc_A	290	Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet	97.68
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	97.56
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	97.54
4g85_A	517	Histidine-tRNA ligase, cytoplasmic; synthetase; 3.	97.51
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	97.46
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	97.37
3net_A	465	Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas	97.36
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	97.33
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	97.21
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	97.16
1qe0_A	420	Histidyl-tRNA synthetase; class II tRNA synthetase	97.14
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	97.13
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	97.12
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	97.1
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	97.1
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	97.04
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	97.02
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	96.94
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	96.91
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	96.9
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	96.85
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	96.78
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	96.77
1weu_A	91	Inhibitor of growth family, member 4; structural g	96.75
1weu_A	91	Inhibitor of growth family, member 4; structural g	96.73
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	96.57
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	96.49
1usy_A	275	ATP phosphoribosyltransferase regulatory subunit;	96.45
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	96.37
1we9_A	64	PHD finger family protein; structural genomics, PH	96.32
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	96.28
1wee_A	72	PHD finger family protein; structural genomics, PH	96.19
1we9_A	64	PHD finger family protein; structural genomics, PH	96.08
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	96.08
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	96.02
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	95.99
1wew_A	78	DNA-binding family protein; structural genomics, P	95.97
3l4g_A	508	Phenylalanyl-tRNA synthetase alpha chain; aminoacy	95.9
1wee_A	72	PHD finger family protein; structural genomics, PH	95.85
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	95.63
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	95.59
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	95.48
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	95.27
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	95.25
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	95.11
3dsq_A	288	Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t	94.96
1wem_A	76	Death associated transcription factor 1; structura	94.91
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	94.82
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	94.63
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	94.56
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	94.47
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	94.16
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	94.08
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	94.01
1wem_A	76	Death associated transcription factor 1; structura	93.97
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	93.96
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	93.86
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	93.75
1b7y_A	350	Phers, protein (phenylalanyl-tRNA synthetase); enz	93.64
1wew_A	78	DNA-binding family protein; structural genomics, P	93.58
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	93.11
2du3_A	534	O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l	92.54
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	91.56
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	91.45
1nnh_A	294	Asparaginyl-tRNA synthetase-related peptide; struc	91.23
2rhq_A	294	Phenylalanyl-tRNA synthetase alpha chain; heterote	90.64
1wyd_A	429	Hypothetical aspartyl-tRNA synthetase; archaea, LI	90.37
1h4v_B	421	Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA	89.78
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	88.98
3a74_A	493	Lysyl-tRNA synthetase; aminoacyl tRNA synthetase,	88.57
1x54_A	434	Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe	88.48
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	88.42
3a5y_A	345	GENX, putative lysyl-tRNA synthetase; aminoacyl-tR	87.9
1eov_A	487	ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy	87.66
3pco_A	327	Phenylalanyl-tRNA synthetase, alpha subunit; amino	87.53
1e1o_A	504	Lysyl-tRNA synthetase, heat inducible; ligase, ami	87.41
4e51_A	467	Histidine--tRNA ligase; seattle structural genomic	87.21
1wu7_A	434	Histidyl-tRNA synthetase; ligase, structural genom	86.99
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	86.32
2xgt_A	435	Asparaginyl-tRNA synthetase, cytoplasmic; ligase,	85.3
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	84.53
1n9w_A	422	Aspartyl-tRNA synthetase 2; biosynthetic protein;	84.0
3kv5_D	488	JMJC domain-containing histone demethylation prote	83.84
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	83.54
3bju_A	521	Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase,	83.21
4ah6_A	617	Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo	83.11
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	82.81
1c0a_A	585	Aspartyl tRNA synthetase; protein-RNA complex, lig	82.33
1l0w_A	580	Aspartyl-tRNA synthetase; space-grown crystal, dim	82.24
3kv5_D	488	JMJC domain-containing histone demethylation prote	82.21
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	80.33
3nem_A	438	Aspartyl-tRNA synthetase; rossmann fold, OB fold,	80.17

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}

Probab=100.00  E-value=7e-61  Score=562.54  Aligned_cols=285  Identities=52%  Similarity=0.811  Sum_probs=221.3

Q ss_pred             CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec----
Q psy11602        193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF----  268 (1083)
Q Consensus       193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf----  268 (1083)
                      +.|++|..+|..|+.+.+. .+||++|.+|++++.+.                +.+.++.+.+.+   .+|++...    
T Consensus       198 p~GarL~raL~~f~~d~~~-~~Gy~EV~~P~lv~~el----------------~~~sG~l~~f~e---emy~v~~~g~~~  257 (522)
T 3vbb_A          198 GVLVFLEQALIQYALRTLG-SRGYIPIYTPFFMRKEV----------------MQEVAQLSQFDE---ELYKVIGKGSEK  257 (522)
T ss_dssp             THHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEEHHH----------------HHHHSCCC-CCS---CCCEEC------
T ss_pred             CHHHHHHHHHHHHHHHHHH-HcCCEEEECCcccchHH----------------HhhcCCcccCcc---cceEeecCCccc
Confidence            4577888899999999885 89999999999999444                455556677766   46665421    


Q ss_pred             -------c----ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhH
Q psy11602        269 -------E----KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDES  329 (1083)
Q Consensus       269 -------d----~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s  329 (1083)
                             +    ++..++++..+.++  ||++|| ++++.+.|||+     |++++||||||||+|||+|.||+|++++|
T Consensus       258 ~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s  337 (522)
T 3vbb_A          258 SDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKS  337 (522)
T ss_dssp             ------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHH
T ss_pred             cccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHH
Confidence                   1    55566666766665  889999 99999999996     57999999999999999999999976669


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCC
Q psy11602        330 WKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMN  409 (1083)
Q Consensus       330 ~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~  409 (1083)
                      +++|++|+.++++||+.||||||||.+|+||||++|+++||||||||++++|+||+|||||+||||||++|||++.+..+
T Consensus       338 ~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~~~~  417 (522)
T 3vbb_A          338 WEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMM  417 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC---C
T ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccceeeeEEccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999753335


Q ss_pred             CceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCCCChhhHHHHHhhhhccccc
Q psy11602        410 EKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKK  489 (1083)
Q Consensus       410 ~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p~D~e~~~~~kk~k~~~kk~  489 (1083)
                      ++.+|||||||||+|++|+|+|||||||++|||+||++|+|||++.+   .++|||++++|+|.+.+++++|+++++||+
T Consensus       418 ~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~---~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~  494 (522)
T 3vbb_A          418 DKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGL---QELIPFVKPAPIEQEPSKKQKKQHEGSKKK  494 (522)
T ss_dssp             CCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTS---SSEEECCSCCCC------------------
T ss_pred             CCeeeceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCc---ceEeecCCCCCcchhHHHHhhhhhcccccc
Confidence            67899999999999999999999999999999999999999999765   256999999999999999888888888777


Q ss_pred             cchhhHhhhhh
Q psy11602        490 VLIDEAMIQNE  500 (1083)
Q Consensus       490 ~~~~~~~~~~~  500 (1083)
                      ...+...+++.
T Consensus       495 ~~~~~~~~~~~  505 (522)
T 3vbb_A          495 AAARDVTLENR  505 (522)
T ss_dssp             -----------
T ss_pred             ccccchhhhHH
Confidence            76665444443

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=100.00  E-value=2.6e-57  Score=529.60  Aligned_cols=255  Identities=42%  Similarity=0.665  Sum_probs=219.0

Q ss_pred             CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---
Q psy11602        193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---  269 (1083)
Q Consensus       193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---  269 (1083)
                      +.|++|..+|..|+.+.+. .+||++|.+|++++.+.+                .+.++.+.+++   .+|++...+   
T Consensus       205 p~GarL~~aL~~f~~d~~~-~~Gy~eV~~P~lv~~~l~----------------~~sG~~~~f~e---~mf~v~~~~~~~  264 (484)
T 3lss_A          205 GGLVQLQVALVSYSLDFLV-KRGYTPFYPPFFLNRDVM----------------GEVAQLSQFDE---ELYQVSGDGDKK  264 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTTCEEEECCSEEEHHHH----------------HHHSCHHHHHH---TCCEEESSSSCE
T ss_pred             CHHHHHHHHHHHHHHHHHH-HcCCEEEecCccccHHHH----------------HhcCCcccccc---cceEeecCCcce
Confidence            3467778899999999885 899999999999995555                44556666666   577665311   


Q ss_pred             ---ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602        270 ---KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       270 ---~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~  338 (1083)
                         ++..++++..+.++  ||++|| ++++.+.|||.     |++|+||||||||+|||+|.||+|++++|+++|++|++
T Consensus       265 ~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~  344 (484)
T 3lss_A          265 YLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMIT  344 (484)
T ss_dssp             EECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHH
T ss_pred             EEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHH
Confidence               55556666666554  789999 99999999995     67999999999999999999999965559999999999


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEeccc---CCCCceeeE
Q psy11602        339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTK---KMNEKIEFV  415 (1083)
Q Consensus       339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~---~~~~~~~~~  415 (1083)
                      ++++||+.||||||||.+|+||||++|+++||||||||++++|+||+|||||+||||||++|||++.+   ..+++.+||
T Consensus       345 ~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~~~~v  424 (484)
T 3lss_A          345 TSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYC  424 (484)
T ss_dssp             HHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCSCEEC
T ss_pred             HHHHHHHHcCCcEEEEEcCCcccCCchhheechheecCCCCCeeEEEEecCcccccccccceEEeccccccccCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999763   124578999


Q ss_pred             EeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCCCC
Q psy11602        416 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPID  472 (1083)
Q Consensus       416 htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p~D  472 (1083)
                      ||||||++|++|+|+|||||||++|||+||++|+|||||.     +.|||++++|+|
T Consensus       425 htlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~-----~~i~~~~~~~~~  476 (484)
T 3lss_A          425 HMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGI-----EMIRFENNAQAE  476 (484)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTC-----CEEECCCC----
T ss_pred             eEEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCc-----ceeecCccCCcc
Confidence            9999999999999999999999999999999999999754     569999999987

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=100.00  E-value=3.3e-57  Score=528.18  Aligned_cols=259  Identities=41%  Similarity=0.671  Sum_probs=221.3

Q ss_pred             CCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--c
Q psy11602        192 TETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--E  269 (1083)
Q Consensus       192 ~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d  269 (1083)
                      .+.|++|..+|..|+.+.+. ..||++|.+|++++.+++                .+.++.+.+++   .+|++...  +
T Consensus       181 ~p~GarL~~aL~~~~~d~~~-~~Gy~eV~~P~lv~~~l~----------------~~sG~l~~f~e---emf~v~~~~~~  240 (485)
T 3qne_A          181 RNYGVFLNQALINYGLSFLS-SKGYVPLQAPVMMNKEVM----------------AKTAQLSQFDE---ELYKVIDGEDE  240 (485)
T ss_dssp             CTHHHHHHHHHHHHHHHHHH-TTTCEEEECCSEEEHHHH----------------HHHSCHHHHTT---TCCEEEETTEE
T ss_pred             ecHHHHHHHHHHHHHHHHHH-HcCCEEEeCCccccHHHH----------------hhcCCcccccc---ceEEEeCCCCe
Confidence            34578888899999999885 899999999999995544                45556666666   57776531  1


Q ss_pred             ----ceEEEEeeCCCCCc---c-hhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHH
Q psy11602        270 ----KVEQFVLTSPHDDE---S-WKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDE  335 (1083)
Q Consensus       270 ----~~~~~~~~~~~~~~---s-~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~  335 (1083)
                          ++++++++..+.++   | |++|| ++++.+.|||.     |++++||+|||||+|||+|.||+|  ++|+++|++
T Consensus       241 ~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~p--e~s~~e~e~  318 (485)
T 3qne_A          241 KYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEP--EKSWEEFDR  318 (485)
T ss_dssp             EEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECG--GGHHHHHHH
T ss_pred             EEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCH--HHHHHHHHH
Confidence                66667777777775   4 99999 99999999996     579999999999999999999999  689999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeE
Q psy11602        336 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFV  415 (1083)
Q Consensus       336 ~~~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~  415 (1083)
                      |++++++||+.||||||||.+|+||||++|+++||||||||++++|+||+|||||+||||||++|||++.+..+++.+||
T Consensus       319 ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~v  398 (485)
T 3qne_A          319 MIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYV  398 (485)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBC
T ss_pred             HHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999763224678999


Q ss_pred             EeecccccchhHHHHHHHhhccCCCceecCccccccCCCcccCCCcccCCCCCCCCChhhH
Q psy11602        416 HMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEET  476 (1083)
Q Consensus       416 htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~~~~~~~~~~~~~~~p~D~e~~  476 (1083)
                      |||||||+|++|+|+|||||||++|||+||++|+|||+|.+    +.|||++++|+|...+
T Consensus       399 htlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~----~~i~~~~~~~~~~~~~  455 (485)
T 3qne_A          399 HCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEP----EFIPYIKELPKNTTSV  455 (485)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCC----SEEECCCCCSSCC---
T ss_pred             EEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcc----eEeeccccCCcccccc
Confidence            99999999999999999999999999999999999998653    5699999999995544

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}

Probab=100.00  E-value=4.8e-52  Score=487.73  Aligned_cols=224  Identities=71%  Similarity=1.173  Sum_probs=190.3

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .+++++|+||+|+++++||+++++||++|||+|||+++|||+|++++|++++||+|+|||+|+|+|+|++|+.++|++.|
T Consensus       262 ~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~  341 (522)
T 3vbb_A          262 SYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMF  341 (522)
T ss_dssp             --CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHH
T ss_pred             cCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999855799999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---CC---
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---KQ---  170 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---~~---  170 (1083)
                      ++|+++|++||+.||||||+|.+++||||++++++||||+|||+.++|+||+|||||+||||||++|+|++.   ++   
T Consensus       342 e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~  421 (522)
T 3vbb_A          342 EEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVE  421 (522)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccceeeeEEccccccCCCee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999864   22   


Q ss_pred             ---ccccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchh
Q psy11602        171 ---KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKK  243 (1083)
Q Consensus       171 ---~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~  243 (1083)
                         ++|+||+|++|+|+|||||||+++||+||++|+|||+.+..   .++|++.+.|+..+..++++|+.+++++.
T Consensus       422 ~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~---~~ip~~~~~~~~~~~~~~~~~~~~~~~~~  494 (522)
T 3vbb_A          422 FVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQ---ELIPFVKPAPIEQEPSKKQKKQHEGSKKK  494 (522)
T ss_dssp             BCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSS---SEEECCSCCCC------------------
T ss_pred             eceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcc---eEeecCCCCCcchhHHHHhhhhhcccccc
Confidence               28999999999999999999999999999999999976542   37899999999988887777666655443

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A

Probab=100.00  E-value=3.4e-52  Score=495.09  Aligned_cols=242  Identities=27%  Similarity=0.470  Sum_probs=214.8

Q ss_pred             CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---
Q psy11602        193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---  269 (1083)
Q Consensus       193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---  269 (1083)
                      +.|++|..+|..|+.+.+. .+||++|.+|++++                .....+.++.+.+++   .+|++...+   
T Consensus       272 p~Ga~l~~aL~~~~~~~~~-~~Gy~ev~~P~lv~----------------~~l~~~sG~~~~f~e---~mf~~~~~~~~L  331 (536)
T 3err_A          272 GDLALYELALLRFAMDFMA-RRGFLPMTLPSYAR----------------EKAFLGTGHFPAYRD---QVWAIAETDLYL  331 (536)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEE----------------HHHHHHHTCTTTTGG---GCCEETTTTEEE
T ss_pred             CHHHHHHHHHHHHHHHHHH-HcCCEEEecccccc----------------HHHHHhcCCcccChh---hceEecCCCEEE
Confidence            3467777899999999885 79999999999999                444555667777777   577765422   


Q ss_pred             -ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHH
Q psy11602        270 -KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNS  340 (1083)
Q Consensus       270 -~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~  340 (1083)
                       ++..++++..+.++  ||++|| ++++.+.|||.     |++++||+|||||+|||+|.||+|+.++|+++|++|++++
T Consensus       332 ~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~  411 (536)
T 3err_A          332 TGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA  411 (536)
T ss_dssp             CSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHH
Confidence             55555556555554  899999 99999999995     5799999999999999999999997569999999999999


Q ss_pred             HHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecc
Q psy11602        341 EEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNA  420 (1083)
Q Consensus       341 e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~  420 (1083)
                      ++||+.||||||||.+++||||++|+++||||+|||++++|+||+|||||+||||||++|||++.   +++.+|||||||
T Consensus       412 ~~i~~~LgLpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~---~~k~~~vhtlng  488 (536)
T 3err_A          412 EEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTLNN  488 (536)
T ss_dssp             HHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEEEEE
T ss_pred             HHHHHHcCCcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECC---CCCeEeeeEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999975   467899999999


Q ss_pred             cccchhHHHHHHHhhccCCCc-eecCccccccCCCccc
Q psy11602        421 TACATTRVICAILETHQTETG-VRIPDCLRKFVPAVYV  457 (1083)
Q Consensus       421 t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~~~~  457 (1083)
                      ||+|++|+|+|||||||++|| |+||++|+||||..++
T Consensus       489 s~~a~~R~l~ailen~q~~dg~i~iP~~L~py~g~~~~  526 (536)
T 3err_A          489 TALATPRILAMLLENHQLQDGRVRVPQALIPYMGKEVL  526 (536)
T ss_dssp             EEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHTSSEE
T ss_pred             cchhHHHHHHHHHHhcCCCCCcEeCChhhCCccCCccc
Confidence            999999999999999999999 9999999999986654

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=100.00  E-value=1e-49  Score=465.60  Aligned_cols=204  Identities=60%  Similarity=1.003  Sum_probs=189.2

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||||+++++||+++++||++||++|||+++|||+|+||+||+++||+|+|||+|+|+|+|++|++++|+++|+
T Consensus       261 ~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e  340 (484)
T 3lss_A          261 GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLE  340 (484)
T ss_dssp             SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHH
T ss_pred             CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999998557999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC------C-
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK------Q-  170 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~------~-  170 (1083)
                      +|+++|++||++||||||+|.+++||||++++++||||+|||+.++|+||+|||||+||||||++|+|++.+      + 
T Consensus       341 ~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~  420 (484)
T 3lss_A          341 DMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNV  420 (484)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCS
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechheecCCCCCeeEEEEecCcccccccccceEEeccccccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998652      2 


Q ss_pred             -----ccccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccc
Q psy11602        171 -----KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPID  226 (1083)
Q Consensus       171 -----~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~  226 (1083)
                           ++|+||+|++|+|+|||||||+++||+||++|+|||++.-     ++|++.+.|..
T Consensus       421 ~~~vhtlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~-----~i~~~~~~~~~  476 (484)
T 3lss_A          421 KEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIE-----MIRFENNAQAE  476 (484)
T ss_dssp             CEECEEEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCC-----EEECCCC----
T ss_pred             ceeeeEEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcc-----eeecCccCCcc
Confidence                 2899999999999999999999999999999999995432     56788888876

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=100.00  E-value=1.7e-50  Score=476.08  Aligned_cols=256  Identities=27%  Similarity=0.474  Sum_probs=214.7

Q ss_pred             CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec---c
Q psy11602        193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF---E  269 (1083)
Q Consensus       193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf---d  269 (1083)
                      +.|++|..+|..|+.+.+. ..||++|.+|++++.++..+.+                +.+.+.+.  .||++...   +
T Consensus       216 p~GarL~~aL~~~~~d~~~-~~Gy~eV~~P~lv~~~l~~~sG----------------~~~~f~e~--emf~v~~~~~~~  276 (501)
T 1wle_A          216 GAGALLQHGLVNFTLNKLI-HRGFTPMTVPDLLRGVVFEGCG----------------MTPNAKPS--QIYNIDPSRFED  276 (501)
T ss_dssp             THHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHT----------------CCSSSSSC--SSCBBCTTTSSS
T ss_pred             ChHHHHHHHHHHHHHHHHH-HcCCEEEeCCccccHHHHHhhc----------------CCCccCcc--ccEEEecCCCCe
Confidence            4577788899999999885 8999999999999966554444                44444431  24444321   1


Q ss_pred             ----ceEEEEeeCCCCCc--chhhhh-hhhcccccccc----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602        270 ----KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       270 ----~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~  338 (1083)
                          ++..++++..+.++  |+++|| ++++.+.|||.    |++++||+|||||+|||+|.||+|+.++|+++|++|++
T Consensus       277 l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~  356 (501)
T 1wle_A          277 LNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLS  356 (501)
T ss_dssp             CEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHH
Confidence                44444455444443  688999 99999999997    46799999999999999999999965699999999999


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEee
Q psy11602        339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHML  418 (1083)
Q Consensus       339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htl  418 (1083)
                      ++++||+.||||||||.+++||||++|+++||||||||+++.|+||+|||||+||||||++|||++.   +++.+|||||
T Consensus       357 ~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~---~gk~~~vHtl  433 (501)
T 1wle_A          357 LQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTE---AGELQFAHTV  433 (501)
T ss_dssp             HHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECS---SSCEEECEEE
T ss_pred             HHHHHHHHCCCcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECC---CCCEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999975   4678899999


Q ss_pred             cccccchhHHHHHHHhhccCCCc-eecCccccccCCCcccCCCcccCCCCCCCCChhhH
Q psy11602        419 NATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVYVNEAGEIPFVKTAPIDEEET  476 (1083)
Q Consensus       419 n~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~~~~~~~~~~~~~~~~p~D~e~~  476 (1083)
                      ||||||++|+|+|||||||+++| |+||++|+||||..      .|++.+.+|+|++-.
T Consensus       434 ngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~------~i~~~~~~~~~~~~~  486 (501)
T 1wle_A          434 NATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTD------RITTPTHVPLQYIGP  486 (501)
T ss_dssp             EEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSS------EECCCSSCCCEECSS
T ss_pred             CCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccCcc------cccCcccCchhhcCC
Confidence            99999999999999999999999 99999999999733      365566788775543

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=100.00  E-value=9.9e-50  Score=465.27  Aligned_cols=211  Identities=58%  Similarity=0.972  Sum_probs=186.7

Q ss_pred             CCCeeEecCChHHHHHHHhcccCC--CCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLP--EASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s--~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      +++++|+||+|++++.|+++++++  |++|||+|||+++|||+|+|++||+++||+|+|||+|+|+|+|++++  +|+++
T Consensus       238 ~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe--~s~~e  315 (485)
T 3qne_A          238 EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPE--KSWEE  315 (485)
T ss_dssp             TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGG--GHHHH
T ss_pred             CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHH--HHHHH
Confidence            467999999999999999999998  99999999999999999999999999999999999999999999986  49999


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC---CC--
Q psy11602         96 LDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT---KQ--  170 (1083)
Q Consensus        96 ~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~---~~--  170 (1083)
                      |++|+++|++||+.||||||+|.+++||||++++++||||+|||+.++|+||+|||||+||||||++|+|++.   ++  
T Consensus       316 ~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~  395 (485)
T 3qne_A          316 FDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEK  395 (485)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CC
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999865   22  


Q ss_pred             ----ccccccccchhheeheeccccCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHh
Q psy11602        171 ----KIYATACATTRVICAILETHQTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQK  234 (1083)
Q Consensus       171 ----~~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~  234 (1083)
                          ++|+||+|++|+|+|||||||+++||+||++|+|||++..    -++|++.+.|+..+..++++
T Consensus       396 ~~vhtlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~----~~i~~~~~~~~~~~~~~~~~  459 (485)
T 3qne_A          396 KYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEP----EFIPYIKELPKNTTSVKKAK  459 (485)
T ss_dssp             CBCEEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCC----SEEECCCCCSSCC-------
T ss_pred             eeeEEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcc----eEeeccccCCcccccccccC
Confidence                2899999999999999999999999999999999996432    26899999999876665544

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A

Probab=100.00  E-value=1.7e-47  Score=454.79  Aligned_cols=192  Identities=39%  Similarity=0.697  Sum_probs=184.6

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++++|+||+|+++++|++++++||++||++|||+++|||+|+|++||+++||+|+|||+|+|+|+|++|+.++|++.|++
T Consensus       327 ~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~  406 (536)
T 3err_A          327 TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQE  406 (536)
T ss_dssp             TTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999984579999999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc------c
Q psy11602         99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK------I  172 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~------~  172 (1083)
                      |+++|++||++||||||+|++++||||++++++||||+|||+.++|+||+||||||||||||++|+|++.++.      +
T Consensus       407 ~~~~~~~i~~~LgLpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtl  486 (536)
T 3err_A          407 LLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTL  486 (536)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEE
T ss_pred             HHHHHHHHHHHcCCcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999976543      8


Q ss_pred             ccccccchhheeheeccccCCCe-eEecccccccccccc
Q psy11602        173 YATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVY  210 (1083)
Q Consensus       173 n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~~~  210 (1083)
                      |+||+|++|+|+|||||||+++| ++||++|+|||+...
T Consensus       487 ngs~~a~~R~l~ailen~q~~dg~i~iP~~L~py~g~~~  525 (536)
T 3err_A          487 NNTALATPRILAMLLENHQLQDGRVRVPQALIPYMGKEV  525 (536)
T ss_dssp             EEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHTSSE
T ss_pred             eccchhHHHHHHHHHHhcCCCCCcEeCChhhCCccCCcc
Confidence            99999999999999999999999 999999999996443

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=100.00  E-value=1.3e-45  Score=434.63  Aligned_cols=194  Identities=36%  Similarity=0.656  Sum_probs=183.2

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ++|+.+++++|+||+|++++++|+++++||++||++|||+++|||+|++ +|++++||+|+|||+|+|+|+|+.|+.++|
T Consensus       269 v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~-~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s  347 (501)
T 1wle_A          269 IDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQS  347 (501)
T ss_dssp             BCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHHH
T ss_pred             EecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCC-CCCCCcCceeeeeeeeeeEEEEeCCcHHHH
Confidence            3455567899999999999999999999999999999999999999999 999999999999999999999999963479


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-  171 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-  171 (1083)
                      +++|++|+++|++||+.||||||+|.+++||||++++++||+|+|+|+.++|.||+|||||+||||+|++|+|.+.++. 
T Consensus       348 ~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~  427 (501)
T 1wle_A          348 SELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGEL  427 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSCE
T ss_pred             HHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999976553 


Q ss_pred             -----cccccccchhheeheeccccCCCe-eEeccccccccc
Q psy11602        172 -----IYATACATTRVICAILETHQTETG-VRIPDCLRKFVP  207 (1083)
Q Consensus       172 -----~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~  207 (1083)
                           +|+||+|++|+|+||||||++++| ++||++|+|||+
T Consensus       428 ~~vHtlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g  469 (501)
T 1wle_A          428 QFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLG  469 (501)
T ss_dssp             EECEEEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHS
T ss_pred             EEEEEECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccC
Confidence                 899999999999999999999999 999999999995

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=100.00  E-value=2.9e-46  Score=434.44  Aligned_cols=238  Identities=28%  Similarity=0.485  Sum_probs=207.1

Q ss_pred             CCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc---
Q psy11602        193 ETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE---  269 (1083)
Q Consensus       193 ~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd---  269 (1083)
                      +.|++|-.+|..|+.+.+. ..||.+|.+|++++.+..                ...++.+.+.+   .||++...+   
T Consensus       163 p~ga~l~~aL~~~~~~~~~-~~Gy~ev~tP~l~~~~l~----------------~~sG~~~~f~~---emy~~~d~~l~L  222 (421)
T 1ses_A          163 GDLALYELALLRFAMDFMA-RRGFLPMTLPSYAREKAF----------------LGTGHFPAYRD---QVWAIAETDLYL  222 (421)
T ss_dssp             THHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEEHHHH----------------HHHTCTTTTGG---GSCBBTTSSEEE
T ss_pred             cHHHHHHHHHHHHHHHHHH-HcCCEEEeCCceecHHHH----------------HhcCCCCcCch---hcEEEcCCeEEE
Confidence            3467777899999999885 889999999999995554                44455555555   455543211   


Q ss_pred             -ceEEEEeeCCCCCc--chhhhh-hhhccccccccc-----ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHH
Q psy11602        270 -KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYAD-----LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNS  340 (1083)
Q Consensus       270 -~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~~-----~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~  340 (1083)
                       ++..++++..+.++  |+++|| ++++.+.|||+.     ++++||+|+|||+|||+|.+++|+.++|+++|++|+..+
T Consensus       223 ~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~  302 (421)
T 1ses_A          223 TGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA  302 (421)
T ss_dssp             CSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             eecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence             44444555555554  788999 999999999984     899999999999999999999995578999999999999


Q ss_pred             HHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecc
Q psy11602        341 EEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNA  420 (1083)
Q Consensus       341 e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~  420 (1083)
                      ++||+.||||||||.++++|||++|+++||||||+|+++.|+|++|||||+||||||++|||++.   +++..||||+||
T Consensus       303 ~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~---~~~~~~vhtlng  379 (421)
T 1ses_A          303 EEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTLNN  379 (421)
T ss_dssp             HHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEEEEE
T ss_pred             HHHHHHCCCceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECC---CCCEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999975   356899999999


Q ss_pred             cccchhHHHHHHHhhccCCCc-eecCccccccCC
Q psy11602        421 TACATTRVICAILETHQTETG-VRIPDCLRKFVP  453 (1083)
Q Consensus       421 t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~  453 (1083)
                      ||+|++|+|+|||||||+++| |+||++|+||||
T Consensus       380 s~lav~R~l~allE~~~~~dG~i~iP~~L~Py~g  413 (421)
T 1ses_A          380 TALATPRILAMLLENHQLQDGRVRVPQALIPYMG  413 (421)
T ss_dssp             EEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHS
T ss_pred             ccchHHHHHHHHHHhCCCCCCCEecChhcCCccC
Confidence            999999999999999999999 999999999994

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=100.00  E-value=2.4e-45  Score=429.91  Aligned_cols=236  Identities=42%  Similarity=0.646  Sum_probs=201.9

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE----  269 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd----  269 (1083)
                      .|++|-.+|..|+.+.+. ..||.+|.+|+++..+...+                .++.+.+.+   .||++...+    
T Consensus       191 ~ga~l~~aL~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~----------------sG~~~~f~~---emy~~~d~~l~Lr  250 (455)
T 2dq0_A          191 EIVILDLALIRFALDRLI-EKGFTPVIPPYMVRRFVEEG----------------STSFEDFED---VIYKVEDEDLYLI  250 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHT----------------TSCTTHHHH---TCCBBTTSSCEEC
T ss_pred             HHHHHHHHHHHHHHHHHH-HcCCEEEeCCcccCHHHHHh----------------cCCCCCChH---hhCeecCCcEEEc
Confidence            356666899999998884 88999999999999555543                344444444   355543211    


Q ss_pred             ceEEEEeeCCCCCc--chhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602        270 KVEQFVLTSPHDDE--SWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE  341 (1083)
Q Consensus       270 ~~~~~~~~~~~~~~--s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e  341 (1083)
                      ++..++++..+.++  |+++|| ++++.+.|||+     |++++||+|+|||+|||+|.+++|  ++|+++|++|+..++
T Consensus       251 Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~p--e~s~~~~~e~l~~~~  328 (455)
T 2dq0_A          251 PTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRP--EESWEWHEKIIRNAE  328 (455)
T ss_dssp             SSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECT--TTHHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCH--HHHHHHHHHHHHHHH
Confidence            33334444444443  578899 99999999997     578999999999999999999999  589999999999999


Q ss_pred             HHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeeccc
Q psy11602        342 EFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNAT  421 (1083)
Q Consensus       342 ~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t  421 (1083)
                      +||+.||||||++.++++|||++|+++||||+|+|++++|+||+|||||+||||||++|||++.+  +++..||||+|||
T Consensus       329 ~il~~LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~~--~g~~~~vHtlngs  406 (455)
T 2dq0_A          329 ELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRT--DEKPRYVHTLNST  406 (455)
T ss_dssp             HHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESST--TSCCEECEEEEEE
T ss_pred             HHHHHcCCceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecCC--CCcEEEEEEEech
Confidence            99999999999999999999999999999999999999999999999999999999999999752  3567899999999


Q ss_pred             ccchhHHHHHHHhhccCCCc-eecCccccccCC
Q psy11602        422 ACATTRVICAILETHQTETG-VRIPDCLRKFVP  453 (1083)
Q Consensus       422 ~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~  453 (1083)
                      |+|++|+|+|||||||+++| |+||++|+|||+
T Consensus       407 ~lav~R~i~allE~~~~~dG~i~iP~~LaP~~g  439 (455)
T 2dq0_A          407 AIATSRAIVAILENHQEEDGTVRIPKVLWKYTG  439 (455)
T ss_dssp             EEEHHHHHHHHHHHSBCTTSCEECCGGGHHHHS
T ss_pred             HhHHHHHHHHHHHHccCCCCcEeCChhhCCccc
Confidence            99999999999999999999 999999999993

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=100.00  E-value=1.3e-43  Score=412.79  Aligned_cols=236  Identities=32%  Similarity=0.537  Sum_probs=199.0

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc----
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE----  269 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd----  269 (1083)
                      .|+++-.+|..|+.+.+. ..||.+|.+|+++..+...+                .++.+.+.+   .+|++...+    
T Consensus       170 ~ga~l~~~L~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~----------------sG~~~~f~~---emy~~~~~~l~Lr  229 (425)
T 2dq3_A          170 WGARLERALINFMLDLHT-KKGYKEICPPHLVKPEILIG----------------TGQLPKFEE---DLYKCERDNLYLI  229 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHH----------------HSCTTTTGG---GSCBCTTTCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHH-HcCCEEEECCccccHHHHHh----------------cCCCCcChh---hheEecCCeEEEc
Confidence            356666889999988885 88999999999999555543                344444444   344443111    


Q ss_pred             ceEEEEeeCCCCC--cchhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602        270 KVEQFVLTSPHDD--ESWKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE  341 (1083)
Q Consensus       270 ~~~~~~~~~~~~~--~s~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e  341 (1083)
                      ++..++++..+.+  .++++|| ++++...|||+     |++++||+|+|||+|||++.+++|  ++|++++++|+..++
T Consensus       230 Pt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~p--e~s~~~~~e~i~~~~  307 (425)
T 2dq3_A          230 PTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHP--DTSYDELEKLVKDAE  307 (425)
T ss_dssp             SSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECG--GGHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCH--HHHHHHHHHHHHHHH
Confidence            2222223333322  2567888 88999999997     569999999999999999999999  579999999999999


Q ss_pred             HHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeeccc
Q psy11602        342 EFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNAT  421 (1083)
Q Consensus       342 ~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t  421 (1083)
                      +||+.||||||+|.++++|||++++++||+|+|+|+++.|+|++|||||+||||||++|+|++..  +++..||||+|||
T Consensus       308 ~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~--~~k~~~vHtl~Gs  385 (425)
T 2dq3_A          308 EVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSK--TGKNRFVHTLNGS  385 (425)
T ss_dssp             HHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTT--TCSEEECEEEEEE
T ss_pred             HHHHHCCCceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCC--CCeeEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999763  2567899999999


Q ss_pred             ccchhHHHHHHHhhccCCCc-eecCccccccCC
Q psy11602        422 ACATTRVICAILETHQTETG-VRIPDCLRKFVP  453 (1083)
Q Consensus       422 ~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~  453 (1083)
                      |+|++|+|+|||||||+++| |+||++|+||||
T Consensus       386 ~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~  418 (425)
T 2dq3_A          386 GLAVGRTLAAILENYQQEDGSVVVPEVLRDYVG  418 (425)
T ss_dssp             EEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHS
T ss_pred             ccHHHHHHHHHHHhCCCCCCCEecCccccCccC
Confidence            99999999999999999999 999999999997

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=100.00  E-value=1.1e-42  Score=404.48  Aligned_cols=188  Identities=40%  Similarity=0.721  Sum_probs=181.6

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++++|+||+|++++.+++++++++++||+++||+++|||+|+|++|++++||+|+|||+|+|+|+|+.|..++|++.|++
T Consensus       218 ~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e  297 (421)
T 1ses_A          218 TDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQE  297 (421)
T ss_dssp             SSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999933569999999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc------c
Q psy11602         99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK------I  172 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~------~  172 (1083)
                      |++.|++||+.||||||+|.+++++||++++++||+|+|+|+.++|.|+++||+|+||||+|++|+|.+.++.      +
T Consensus       298 ~~~~~~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtl  377 (421)
T 1ses_A          298 LLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTL  377 (421)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEE
T ss_pred             HHHHHHHHHHHCCCceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECCCCCEEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999976543      8


Q ss_pred             ccccccchhheeheeccccCCCe-eEecccccccc
Q psy11602        173 YATACATTRVICAILETHQTETG-VRIPDCLRKFV  206 (1083)
Q Consensus       173 n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~  206 (1083)
                      |+||+|++|+|+||||||++++| ++||++|+|||
T Consensus       378 ngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~  412 (421)
T 1ses_A          378 NNTALATPRILAMLLENHQLQDGRVRVPQALIPYM  412 (421)
T ss_dssp             EEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred             CCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence            99999999999999999999999 99999999999

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=100.00  E-value=9e-42  Score=399.70  Aligned_cols=186  Identities=54%  Similarity=0.965  Sum_probs=180.4

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++++|+||+|++++.+|+++++++++||++|+++++|||+|++++|++++||+|+|||+|+|+|.|+.|+  +|++.|++
T Consensus       245 ~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe--~s~~~~~e  322 (455)
T 2dq0_A          245 EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE--ESWEWHEK  322 (455)
T ss_dssp             SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT--THHHHHHH
T ss_pred             CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH--HHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999996  49999999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC-CCc------
Q psy11602         99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT-KQK------  171 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~-~~~------  171 (1083)
                      |++.|++||+.|||||+++.++++++|++++++||+|+|+|+.++|+|++||+||+||||+|++|+|.+. ++.      
T Consensus       323 ~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHt  402 (455)
T 2dq0_A          323 IIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHT  402 (455)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEE
T ss_pred             HHHHHHHHHHHcCCceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999976 442      


Q ss_pred             cccccccchhheeheeccccCCCe-eEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETG-VRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~  206 (1083)
                      +|+||+|++|+|+||||||++++| ++||..|+|||
T Consensus       403 lngs~lav~R~i~allE~~~~~dG~i~iP~~LaP~~  438 (455)
T 2dq0_A          403 LNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYT  438 (455)
T ss_dssp             EEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred             EechHhHHHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence            789999999999999999999999 99999999999

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*

Probab=100.00  E-value=1.3e-42  Score=387.31  Aligned_cols=225  Identities=14%  Similarity=0.113  Sum_probs=178.9

Q ss_pred             eEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc------
Q psy11602        196 VRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE------  269 (1083)
Q Consensus       196 i~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd------  269 (1083)
                      ..|-.+|..||.+ .. .+||.+|..|.+++.+..++.+                +.+++.+   .+|.++.++      
T Consensus        64 a~L~~aLe~~~~~-~~-~~Gy~ev~~P~lv~~~~~e~SG----------------hl~~F~e---~mf~v~~~~~d~~e~  122 (346)
T 3mf2_A           64 ESIVERLAALITS-HR-EAGTEALRFPPVMSRAQLEKSG----------------YLKSFPN---LLGCVCGLHGTEREI  122 (346)
T ss_dssp             HHHHHHHHHHHHH-TC-CTTCEEEECCSEEEHHHHHHTT----------------HHHHCGG---GCEEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHh-hH-hcCCeEEECCCccCHHHHHhcC----------------CcccChh---hcceeecccccchhh
Confidence            5566889999988 74 8999999999999966665554                4444444   233332211      


Q ss_pred             -------------------------ceEEEEeeCCCCCc-chhhhh-hhhcccccccccccCcCceeEEEeeeEEEEEEe
Q psy11602        270 -------------------------KVEQFVLTSPHDDE-SWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLT  322 (1083)
Q Consensus       270 -------------------------~~~~~~~~~~~~~~-s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~  322 (1083)
                                               +++.++++..+.++ --.+.| ++...+.|||+.. .+||+|||||+|||++.||
T Consensus       123 ~~ll~~~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~Ea-S~GL~RvhqF~kvE~v~~~  201 (346)
T 3mf2_A          123 NAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREP-SKHLDRLQSFRMREYVCIG  201 (346)
T ss_dssp             HHHHHHHHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCC-CSSTTSCSEEEEEEEEEEE
T ss_pred             hhhhhhhccccccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcC-CCCCeeeeeeEEEEEEEEe
Confidence                                     22222222222211 011113 3333455999988 5899999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccCCCcchh------------hhceeeEEEeeCCCCcEEeeecccCc
Q psy11602        323 SPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHA------------AAKKLDLEAWFPGSGAFRELVSCSNC  390 (1083)
Q Consensus       323 ~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~~dl~~~------------a~~~~DiE~w~P~~~~y~Ev~S~sn~  390 (1083)
                      +|  |+|++++++|++++++||+.|||||||+.+  +|+||+            +++|||||||+|++++|+||+|||||
T Consensus       202 tp--Eqs~~e~e~l~~~ae~il~~LgLpyrv~~~--~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~  277 (346)
T 3mf2_A          202 TP--DDVSDFRERWMVRAQAIARDLGLTFRVDYA--SDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYH  277 (346)
T ss_dssp             SH--HHHHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEEC
T ss_pred             CH--HHHHHHHHHHHHHHHHHHHHCCCCEEEEEc--cCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecc
Confidence            99  799999999999999999999999999977  799998            36899999999999999999999999


Q ss_pred             ccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCCc
Q psy11602        391 LAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV  455 (1083)
Q Consensus       391 ~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~  455 (1083)
                      +||||||++|||++       .+||||+ |+|+|++|+|+|||||||++. +.||++||+||++.
T Consensus       278 ~dfqarR~~Ir~~~-------~~~vHT~-~sglav~R~l~AiLen~G~d~-~~wP~~lr~~l~~~  333 (346)
T 3mf2_A          278 REHFGTTWGIQDAN-------GEPAHTG-CVAFGMDRLAVAMFHTHGTDL-SAWPAKVRDILGLQ  333 (346)
T ss_dssp             TTHHHHHHTCBCTT-------SSBCEEE-EEEEEHHHHHHHHHHHHCSCG-GGSCHHHHHHTTSC
T ss_pred             cchhhhhhcceeCC-------CCeEEEc-ccchHHHHHHHHHHHHcCCCc-cccCHHHHHHhCCC
Confidence            99999999999973       2699998 999999999999999999884 78999999999854

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=100.00  E-value=4.7e-40  Score=382.96  Aligned_cols=188  Identities=41%  Similarity=0.776  Sum_probs=181.1

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||+|++++.+|+++++++++||+||+++++|||+|++++||+++||+|+|||+|+|+++|+.++.  |++.++
T Consensus       223 ~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~--s~~~~~  300 (425)
T 2dq3_A          223 RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDT--SYDELE  300 (425)
T ss_dssp             TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGG--HHHHHH
T ss_pred             CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHH--HHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999963  999999


Q ss_pred             HHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCC-Cc-----
Q psy11602         98 EMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTK-QK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~-~~-----  171 (1083)
                      +|+..+.+||+.|||||+++.+++|++|++++++||+|+|+|+.++|.|+++|+||+||||+|++|+|.+.+ +.     
T Consensus       301 e~i~~~~~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vH  380 (425)
T 2dq3_A          301 KLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVH  380 (425)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECE
T ss_pred             HHHHHHHHHHHHCCCceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999765 22     


Q ss_pred             -cccccccchhheeheeccccCCCe-eEeccccccccc
Q psy11602        172 -IYATACATTRVICAILETHQTETG-VRIPDCLRKFVP  207 (1083)
Q Consensus       172 -~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~  207 (1083)
                       +|++|+|++|+|+||||||++++| ++||++|+|||+
T Consensus       381 tl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~  418 (425)
T 2dq3_A          381 TLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVG  418 (425)
T ss_dssp             EEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHS
T ss_pred             EEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccC
Confidence             899999999999999999999999 999999999995

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*

Probab=100.00  E-value=2.4e-35  Score=328.83  Aligned_cols=183  Identities=17%  Similarity=0.201  Sum_probs=163.3

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcc-cCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDS-WLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~-i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      .++..+.+++|+||+|.+++++++++ +++  +.|+++..+++|||+|+ +     +||+|+|||+|+|++.|++|+  +
T Consensus       136 ~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~Ea-S-----~GL~RvhqF~kvE~v~~~tpE--q  205 (346)
T 3mf2_A          136 TTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREP-S-----KHLDRLQSFRMREYVCIGTPD--D  205 (346)
T ss_dssp             GGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCC-C-----SSTTSCSEEEEEEEEEEESHH--H
T ss_pred             ccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcC-C-----CCCeeeeeeEEEEEEEEeCHH--H
Confidence            34445668999999999999999986 777  44999999999999999 5     389999999999999999886  5


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcc------------cceeEeEEEEecCCCceeEEEEcCCCchhhhh
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHA------------AAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR  159 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~------------as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~  159 (1083)
                      +++.+++|++.++.||+.||||||++.+  +|+|.+            +++|||+|+|+|++++|.||+|||||+|||||
T Consensus       206 s~~e~e~l~~~ae~il~~LgLpyrv~~~--~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfqar  283 (346)
T 3mf2_A          206 VSDFRERWMVRAQAIARDLGLTFRVDYA--SDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGT  283 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEc--cCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchhhh
Confidence            9999999999999999999999999987  789977            36899999999999999999999999999999


Q ss_pred             cccceeccCCCc-cccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602        160 RLLVRYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKFVPA  208 (1083)
Q Consensus       160 rl~i~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~  208 (1083)
                      |++|||++.... ..|+|+|++|+|+||||||+++ -+.||++|+++++.
T Consensus       284 R~~Ir~~~~~~vHT~~sglav~R~l~AiLen~G~d-~~~wP~~lr~~l~~  332 (346)
T 3mf2_A          284 TWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGTD-LSAWPAKVRDILGL  332 (346)
T ss_dssp             HHTCBCTTSSBCEEEEEEEEHHHHHHHHHHHHCSC-GGGSCHHHHHHTTS
T ss_pred             hhcceeCCCCeEEEcccchHHHHHHHHHHHHcCCC-ccccCHHHHHHhCC
Confidence            999999853222 3478899999999999999988 47899999999964

>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}

Probab=100.00  E-value=2.9e-35  Score=348.35  Aligned_cols=182  Identities=17%  Similarity=0.203  Sum_probs=171.5

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||+|++++.++++++.||++||++|||++++||+|+    ++++||+|+|||+|+|+++|+.+. ++|++.++
T Consensus       114 ~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~----~~~~GL~R~REF~q~e~h~f~~~~-e~a~~e~~  188 (518)
T 3ial_A          114 EERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHET----KNTKPLIRVREIHWNEAHCCHATA-EDAVSQLS  188 (518)
T ss_dssp             EEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTC----CSCBTTTBCSEEEEEEEEEEESSH-HHHHHHHH
T ss_pred             CcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCC----CCCCCCceeeEEEEeeEEEEECCH-HHHHHHHH
Confidence            5689999999999999999999999999999999999999999    557999999999999999997766 78999999


Q ss_pred             HHHHHHHHHH-HHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         98 EMIQNSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if-~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      +|+++|.+|| +.|||||+++.++++|++++|.++||||+|||+ ++++|++++++++++||++|+|+|.+.+|.     
T Consensus       189 ~~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pd-gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h  267 (518)
T 3ial_A          189 DYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAGIHNLGQRFSSTFDILYANKANESVHPY  267 (518)
T ss_dssp             HHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCE
T ss_pred             HHHHHHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCC-CCEEEEeceecccchhhhhcCcEEECCCCCEeeeE
Confidence            9999999999 999999999999999999999999999999996 789999999999999999999999988765     


Q ss_pred             cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      +++.|++ +|+|+||||+|++++|++||+.|+||+
T Consensus       268 ~~~~G~~-~R~iaaliE~~~de~Gl~lP~~LAP~q  301 (518)
T 3ial_A          268 LTCAGIS-TRVLACALSIHGDSGGLVLPPLIAPIH  301 (518)
T ss_dssp             EEEEEEE-THHHHHHHHHHCBTTBCCCCGGGCSCS
T ss_pred             EeccchH-HHHHHHHHHHhCCCCccccCCccceEE
Confidence            4555666 999999999999999999999999998

>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*

Probab=99.97  E-value=3.1e-32  Score=323.78  Aligned_cols=182  Identities=19%  Similarity=0.289  Sum_probs=171.2

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEe-EEEEEEEeCCCchHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFE-KVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~-~~e~~~~~~~~~e~s~~~~   96 (1083)
                      +++++|+||+|++++.+|++++.++++||+++||+++|||+|.    ++++||+|+|||+ |+|++.+..+. ++|++.+
T Consensus       129 ~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~----~~~rGl~R~REF~~q~e~~~~~~~~-e~a~~e~  203 (501)
T 1nj1_A          129 QRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET----KHTRPLIRVREITTFKEAHTIHATA-SEAEEQV  203 (501)
T ss_dssp             EEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCC----SCCBTTTBCSEEEEEEEEEEEESSH-HHHHHHH
T ss_pred             CCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCC----CCCCCCceeEEEeeeeeEEEEECCH-HHHHHHH
Confidence            5789999999999999999999999999999999999999999    4578999999999 99999877766 6799999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      ++|+++|.+||+.|||||+++..+.++++.++..+||||+|||+ +++.|++++++||++||++++++|.+.+|.     
T Consensus       204 ~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~~die~~l~~-g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h  282 (501)
T 1nj1_A          204 ERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVH  282 (501)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECE
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeCCchhhcCCcccceEEEEEcCC-CCEEEEEEEEeccccchhhcCeEEECCCCCEEeee
Confidence            99999999999999999999999999999999999999999996 789999999999999999999999876553     


Q ss_pred             cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      ++++|++ +|+|+||+|+|++++|++||..|+|++
T Consensus       283 ~~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~q  316 (501)
T 1nj1_A          283 QTCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQ  316 (501)
T ss_dssp             EEEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCS
T ss_pred             eccccHH-HHHHHHHHHHcCcccCccCCccccCce
Confidence            6788888 999999999999999999999999998

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A

Probab=99.97  E-value=3.7e-33  Score=329.96  Aligned_cols=232  Identities=16%  Similarity=0.120  Sum_probs=179.7

Q ss_pred             eEeccccccccccc-ccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEee--e-----
Q psy11602        196 VRIPDCLRKFVPAV-YLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVH--Q-----  267 (1083)
Q Consensus       196 i~lP~~L~p~~~~~-~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~--q-----  267 (1083)
                      +.|-.+|..++.+. + ...||.+|..|+++..+..++.+                +.+.+.+   .+|++.  .     
T Consensus       231 ~~L~~~L~~~~~~e~~-~~~G~~EV~tP~L~~~el~~~SG----------------h~~~F~d---emy~v~~~~~Rd~~  290 (522)
T 2cja_A          231 ARIFRTFEKIVLEELL-EPLGYREMIFPKLVTWEVWMKSG----------------HAKGVYP---EIYYVCPPQTRDPD  290 (522)
T ss_dssp             HHHHHHHHHHHHHHTH-HHHTCEECBCCSEEEHHHHHHHT----------------GGGTCGG---GCCEEECBSCCCHH
T ss_pred             HHHHHHHHHHHHHHHH-HHcCCEEEECCCcccHHHHhhcC----------------CcCcccc---ceeeeecCCccchh
Confidence            33447788888754 4 37899999999999977665544                3333333   233321  0     


Q ss_pred             -------------------------cc-----ceEEEEeeCCCC--Ccchhhhh-hhhc-ccccccccccC--cCceeEE
Q psy11602        268 -------------------------FE-----KVEQFVLTSPHD--DESWKMLD-EMIQ-NSEEFYADLDT--RGIFRVH  311 (1083)
Q Consensus       268 -------------------------fd-----~~~~~~~~~~~~--~~s~~~~~-~~~~-~~~~~~~~~~t--rGl~Rvh  311 (1083)
                                               .+     ++...+++..+.  -.||++|| ++++ ...|||+. ..  +||+|+|
T Consensus       291 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~R  369 (522)
T 2cja_A          291 YWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVD  369 (522)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCS
T ss_pred             hhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeE
Confidence                                     01     111112222222  24678899 8999 89999997 44  9999999


Q ss_pred             EeeeEEEEEEeCCCchhHHHHHHHHH-HHHHHHHHHhCCcEEEEeccCCCcch------------hhhceeeEEEeeC--
Q psy11602        312 QFEKVEQFVLTSPHDDESWKTLDEMI-QNSEEFYADLGIAYRVVNIVSGALNH------------AAAKKLDLEAWFP--  376 (1083)
Q Consensus       312 qf~kvE~f~~~~~~~~~s~~~~e~~~-~~~e~~~~~L~lpyRvv~~~~~dl~~------------~a~~~~DiE~w~P--  376 (1083)
                      ||+++|++.|++|  +++++.+++|+ ..++.||+.|||| ++ .+ ++|.++            ++++|||||+|||  
T Consensus       370 EF~q~E~~~F~~p--e~s~ee~ee~i~~~~~~~l~~LGLp-~v-~~-~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~  444 (522)
T 2cja_A          370 EFHRIEIVWIGTK--EEVLKCAEELHDRYMHIFNDILDIE-WR-KA-RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYR  444 (522)
T ss_dssp             EEEEEEEEEEEEH--HHHHHHHHHHHHHHHHHHHHTSCCC-EE-EE-EC----------------CCCEEEEEEECCGGG
T ss_pred             EEEEeeEEEEeCh--HHHHHHHHHHHHHHHHHHHHHcCCC-EE-ee-ccCCccccccccccchhccccceEEEEEecccc
Confidence            9999999999998  68999999999 9999999999999 64 33 567666            4789999999999  


Q ss_pred             -CCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccccccCCCc
Q psy11602        377 -GSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFVPAV  455 (1083)
Q Consensus       377 -~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~~~~  455 (1083)
                       ++++|+|++|||||+||||||++|+|++       .+|+|| |++|+|++|+|+|||||||+++| .||++||||||+.
T Consensus       445 ~g~~~~~eisS~s~~~d~qarr~~Ir~~~-------~~~vht-~~~Glgv~Rli~AlLE~~~~~~~-~wP~~lr~ym~g~  515 (522)
T 2cja_A          445 GPDGEWLEFQNVSINGDKYPKGFNVKLQS-------GDELWS-GCSGVGLERWAAVFLAQKGLDPA-NWPEEFRNRVGEM  515 (522)
T ss_dssp             CTTCCCEEEEEEEECTTHHHHHHTCEETT-------CCCEEE-EEEEEEHHHHHHHHHHHHCSCGG-GSCHHHHHHHCSC
T ss_pred             cCCCcEEEEeeechhhhhcccccceEcCC-------CCEEEE-eccCcHHHHHHHHHHHHcCCCCC-cCchHHHHhhCCC
Confidence             7999999999999999999999999973       248999 69999999999999999999877 8999999999854


Q ss_pred             ccCCCcccCCC
Q psy11602        456 YVNEAGEIPFV  466 (1083)
Q Consensus       456 ~~~~~~~~~~~  466 (1083)
                          +++|||+
T Consensus       516 ----~~~~~~~  522 (522)
T 2cja_A          516 ----PKGIRFL  522 (522)
T ss_dssp             ----CCCCCCC
T ss_pred             ----CccCCCC
Confidence                5778885

>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.1e-32  Score=323.27  Aligned_cols=182  Identities=14%  Similarity=0.120  Sum_probs=169.5

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++++|+||+|.+++.+|+++++||++||+||+|++++||+|+    ++++||+|+|||+|+|+++|..+. ++|++.+..
T Consensus       121 e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~----~~~~Gl~R~ReF~q~e~h~~~~~~-e~a~~E~~~  195 (519)
T 4hvc_A          121 EPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEF----KHPQPFLRTREFLWQEGHSAFATM-EEAAEEVLQ  195 (519)
T ss_dssp             EEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCC----SCCBTTTBCSEEEEEEEEEEESSH-HHHHHHHHH
T ss_pred             cceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCC----CCCCCCcceeEEEEeeEEEEecCH-HHHHHHHHH
Confidence            469999999999999999999999999999999999999998    567999999999999999966666 679999999


Q ss_pred             HHHHHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccC--CCc----
Q psy11602         99 MIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQT--KQK----  171 (1083)
Q Consensus        99 ~~~~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~--~~~----  171 (1083)
                      |++.|++||+.| +|||+++..+.++++.++..+||||+|||+.+++.|++++++++++||++|+|+|.+.  ++.    
T Consensus       196 ~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~v  275 (519)
T 4hvc_A          196 ILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFA  275 (519)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEEC
T ss_pred             HHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEE
Confidence            999999999997 9999999999999999999999999999999999999999999999999999999985  233    


Q ss_pred             -cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 -IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 -~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                       +++.|++ +|+|+||+|+|++++|++||..|+|++
T Consensus       276 h~~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~q  310 (519)
T 4hvc_A          276 YQNSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQ  310 (519)
T ss_dssp             EEEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCS
T ss_pred             EEccccHH-HHHHHHHHHHhCccccccccccCCCeE
Confidence             4566776 999999999999999999999999998

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A

Probab=99.97  E-value=2.4e-32  Score=323.07  Aligned_cols=183  Identities=18%  Similarity=0.181  Sum_probs=159.5

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEee-eccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLG-VSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyq-i~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      +.+++++|+||+|++++.+|+++++++++||+++|| +++|||+|.    ..++||+|+|||+|+|++.|+.++  ++++
T Consensus       314 ~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Ep----gs~~GL~R~REF~q~E~~~F~~pe--~s~e  387 (522)
T 2cja_A          314 IAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYES----GGIHGIERVDEFHRIEIVWIGTKE--EVLK  387 (522)
T ss_dssp             BCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCS----SSCCCTTSCSEEEEEEEEEEEEHH--HHHH
T ss_pred             cCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCC----CCCCCCeEeEEEEEeeEEEEeChH--HHHH
Confidence            356799999999999999999999999999999999 999999995    347899999999999999999775  5999


Q ss_pred             HHHHHH-HHHHHHHHHcCCceEEEEeccCCCCc------------ccceeEeEEEEec---CCCceeEEEEcCCCchhhh
Q psy11602         95 MLDEMI-QNSEEFYADLGIAYRVVNIVSGALNH------------AAAKKLDLEAWFP---GSGAFRELVSCSNCLDYQS  158 (1083)
Q Consensus        95 ~~~~~~-~~y~~if~~LgLpyrvv~~~sgdlg~------------~as~~~diE~~~P---~~~~~~ev~s~s~cgdyqs  158 (1083)
                      .+++++ ...+.|++.|||| ++ .. ++|.|.            .++.+||||+|||   +.+.+.+++||++|+||||
T Consensus       388 e~ee~i~~~~~~~l~~LGLp-~v-~~-~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~qa  464 (522)
T 2cja_A          388 CAEELHDRYMHIFNDILDIE-WR-KA-RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYP  464 (522)
T ss_dssp             HHHHHHHHHHHHHHHTSCCC-EE-EE-EC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCC-EE-ee-ccCCccccccccccchhccccceEEEEEecccccCCCcEEEEeeechhhhhcc
Confidence            999999 7777788999999 53 33 445444            3689999999999   6899999999999999999


Q ss_pred             hcccceeccCCCc-cccccccchhheeheeccccCCCeeEecccccccccc
Q psy11602        159 RRLLVRYGQTKQK-IYATACATTRVICAILETHQTETGVRIPDCLRKFVPA  208 (1083)
Q Consensus       159 ~rl~i~y~~~~~~-~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~~~  208 (1083)
                      ++|+|+|.+.... .+++|+|++|+|+||||||+++.+ .||.+|+|||+.
T Consensus       465 rr~~Ir~~~~~~vht~~~Glgv~Rli~AlLE~~~~~~~-~wP~~lr~ym~g  514 (522)
T 2cja_A          465 KGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPA-NWPEEFRNRVGE  514 (522)
T ss_dssp             HHHTCEETTCCCEEEEEEEEEHHHHHHHHHHHHCSCGG-GSCHHHHHHHCS
T ss_pred             cccceEcCCCCEEEEeccCcHHHHHHHHHHHHcCCCCC-cCchHHHHhhCC
Confidence            9999999854433 778999999999999999998876 999999999954

>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*

Probab=99.95  E-value=1.6e-28  Score=291.97  Aligned_cols=230  Identities=17%  Similarity=0.263  Sum_probs=187.8

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ceE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KVE  272 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~~  272 (1083)
                      |..+-.+|..++.+.+ .. ||.+|..|+++..+...+.               .++.+.+.+   .||++....  +.+
T Consensus        70 g~~l~~~i~~~~~~~~-~~-G~~ei~tP~l~~~~l~~~~---------------sG~~~~f~~---emy~~~d~g~~~~~  129 (501)
T 1nj1_A           70 GFMIRKNTLKILRRIL-DR-DHEEVLFPLLVPEDELAKE---------------AIHVKGFED---EVYWVTHGGLSKLQ  129 (501)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-TCEECCCCSEEEHHHHTTS---------------HHHHHHTTT---TCCEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHH-Hc-CCEEEecCcEecHHHHhcc---------------cCCcccCCc---ceEEEecCCCcccC
Confidence            3444467788877777 37 9999999999996555331               122333333   456554321  011


Q ss_pred             EEEeeCCCC-----------Ccchhhhh-hhhccccccccccc-CcCceeEEEee-eEEEE-EEeCCCchhHHHHHHHHH
Q psy11602        273 QFVLTSPHD-----------DESWKMLD-EMIQNSEEFYADLD-TRGIFRVHQFE-KVEQF-VLTSPHDDESWKTLDEMI  337 (1083)
Q Consensus       273 ~~~~~~~~~-----------~~s~~~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~-kvE~f-~~~~~~~~~s~~~~e~~~  337 (1083)
                      .--...|..           -.||++|| ++++...|||+.+. +|||+|+|||+ ++|.. .+++|  +++++.+++|+
T Consensus       130 ~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~--e~a~~e~~~~l  207 (501)
T 1nj1_A          130 RKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATA--SEAEEQVERAV  207 (501)
T ss_dssp             EEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSH--HHHHHHHHHHH
T ss_pred             CeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCH--HHHHHHHHHHH
Confidence            111233321           14788999 99999999999877 99999999999 99964 56777  68999999999


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEe
Q psy11602        338 QNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHM  417 (1083)
Q Consensus       338 ~~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~ht  417 (1083)
                      ..+++||+.||||||++..+++|++++|.++||||+|||. |++.|++|++||+|+||+|++|||.+.   +++.+|+|+
T Consensus       208 ~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~~die~~l~~-g~~~ei~t~~~lg~~~a~~~~~ry~~~---~g~~~~~h~  283 (501)
T 1nj1_A          208 EIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETP---EGDHEYVHQ  283 (501)
T ss_dssp             HHHHHHHHHHTCCCEEEECCTTTSCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEE
T ss_pred             HHHHHHHHHCCCeEEEEeCCchhhcCCcccceEEEEEcCC-CCEEEEEEEEeccccchhhcCeEEECC---CCCEEeeee
Confidence            9999999999999999999999999999999999999996 999999999999999999999999875   466789999


Q ss_pred             ecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        418 LNATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       418 ln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                       ||+|++ +|+|+||||+||+++|++||+.|+||.
T Consensus       284 -~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~q  316 (501)
T 1nj1_A          284 -TCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQ  316 (501)
T ss_dssp             -EEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCS
T ss_pred             -ccccHH-HHHHHHHHHHcCcccCccCCccccCce
Confidence             899999 999999999999999999999999986

>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}

Probab=99.95  E-value=1.5e-28  Score=291.19  Aligned_cols=230  Identities=16%  Similarity=0.183  Sum_probs=187.9

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ceE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KVE  272 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~~  272 (1083)
                      |..|-.+|..++.+.+. ..||.+|..|+++..+...+.               .++...+.+   .||++....  ..+
T Consensus        54 G~~i~~~L~~~~~~~~~-~~Gy~eV~tP~l~~~el~~k~---------------sgh~~~f~~---emy~v~d~g~~~~~  114 (518)
T 3ial_A           54 GFFMENAIMRLCEEEYA-KVGISQILFPTVIPESFLKKE---------------SDHIKGFEA---ECFWVEKGGLQPLE  114 (518)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCEECBCCSEEEHHHHTSS---------------HHHHHHHGG---GCEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEEcccccCHHHHHhh---------------cCCcccccc---cEEEEecCCCcccC
Confidence            34444678888877774 789999999999996554221               122333333   455554321  111


Q ss_pred             EEEeeCCCC-----------Ccchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEE-eCCCchhHHHHHHHHHH
Q psy11602        273 QFVLTSPHD-----------DESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVL-TSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       273 ~~~~~~~~~-----------~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~-~~~~~~~s~~~~e~~~~  338 (1083)
                      .--...|..           -.||++|| ++++...|||+. +.++||+|+|||.++|++.| ++|  +++++.+++|++
T Consensus       115 ~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~--e~a~~e~~~~l~  192 (518)
T 3ial_A          115 ERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATA--EDAVSQLSDYWK  192 (518)
T ss_dssp             EEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSH--HHHHHHHHHHHH
T ss_pred             cceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCH--HHHHHHHHHHHH
Confidence            112233321           24789999 999999999997 67899999999999999999 777  789999999999


Q ss_pred             HHHHHH-HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEe
Q psy11602        339 NSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHM  417 (1083)
Q Consensus       339 ~~e~~~-~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~ht  417 (1083)
                      .+++|| +.||||||++.++++|++++|.++||||+|||. |++.|++++++++++||+|++|+|.+.   +++..|+|+
T Consensus       193 ~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pd-gr~ie~gt~~~Lg~~~s~rf~i~y~d~---~g~~~~~h~  268 (518)
T 3ial_A          193 VIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAGIHNLGQRFSSTFDILYANK---ANESVHPYL  268 (518)
T ss_dssp             HHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCCEECT---TCCEECCEE
T ss_pred             HHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCC-CCEEEEeceecccchhhhhcCcEEECC---CCCEeeeEE
Confidence            999999 999999999999999999999999999999996 999999999999999999999999976   567899995


Q ss_pred             -ecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        418 -LNATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       418 -ln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                       ++|++   +|+|+||||+|++++|++||+.|+||-
T Consensus       269 ~~~G~~---~R~iaaliE~~~de~Gl~lP~~LAP~q  301 (518)
T 3ial_A          269 TCAGIS---TRVLACALSIHGDSGGLVLPPLIAPIH  301 (518)
T ss_dssp             EEEEEE---THHHHHHHHHHCBTTBCCCCGGGCSCS
T ss_pred             eccchH---HHHHHHHHHHhCCCCccccCCccceEE
Confidence             66654   999999999999999999999999995

>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}

Probab=99.94  E-value=6.6e-28  Score=286.20  Aligned_cols=233  Identities=14%  Similarity=0.117  Sum_probs=189.4

Q ss_pred             eEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccce--EE
Q psy11602        196 VRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKV--EQ  273 (1083)
Q Consensus       196 i~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~--~~  273 (1083)
                      +.|-.+|..|+.+.+. ..||.+|..|+++..+...+.               .++...+.+   .+|.+...+..  ++
T Consensus        61 ~~i~~~L~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~k~---------------sGh~~~f~~---emy~~~d~g~~~l~e  121 (519)
T 4hvc_A           61 YAIWEAIKDFFDAEIK-KLGVENCYFPMFVSQSALEKE---------------KTHVADFAP---EVAWVTRSGKTELAE  121 (519)
T ss_dssp             HHHHHHHHHHHHHHHH-HTTCEECBCCSEEEHHHHTTS---------------CCSCGGGGG---GCEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHH-HcCCEEEeccccccHHHHhcc---------------cCCcccccc---cceEEeccCCccccc
Confidence            4444778888877774 789999999999995554321               233444444   45554332211  11


Q ss_pred             EEeeCCC-----------CCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEE-EeCCCchhHHHHHHHHHHH
Q psy11602        274 FVLTSPH-----------DDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFV-LTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       274 ~~~~~~~-----------~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~-~~~~~~~~s~~~~e~~~~~  339 (1083)
                      --...|.           .-.||++|| ++++...|||+. +.++||+|+|||+++|++. +++|  ++|++.+++|++.
T Consensus       122 ~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~--e~a~~E~~~~l~~  199 (519)
T 4hvc_A          122 PIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATM--EEAAEEVLQILDL  199 (519)
T ss_dssp             EEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSH--HHHHHHHHHHHHH
T ss_pred             ceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCH--HHHHHHHHHHHHH
Confidence            1223332           124789999 999999999998 8889999999999999998 7787  7899999999999


Q ss_pred             HHHHHHHh-CCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEee
Q psy11602        340 SEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHML  418 (1083)
Q Consensus       340 ~e~~~~~L-~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htl  418 (1083)
                      +++||+.| +|||+++..+.+|.+++|.++||||||||++|++.|++++++++++||+|++|+|.+... +++..|||+ 
T Consensus       200 ~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~-~g~~~~vh~-  277 (519)
T 4hvc_A          200 YAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKI-PGEKQFAYQ-  277 (519)
T ss_dssp             HHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTS-TTCEEECEE-
T ss_pred             HHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEecccc-CCCEEEEEE-
Confidence            99999997 999999999999999999999999999999999999999999999999999999997521 356789998 


Q ss_pred             cccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        419 NATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       419 n~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      ++.|+. +|+|+||+|+|++++|+++|..|+||-
T Consensus       278 ~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~q  310 (519)
T 4hvc_A          278 NSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQ  310 (519)
T ss_dssp             EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCS
T ss_pred             ccccHH-HHHHHHHHHHhCccccccccccCCCeE
Confidence            356665 999999999999999999999999985

>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1

Probab=99.94  E-value=1.9e-27  Score=280.14  Aligned_cols=182  Identities=21%  Similarity=0.276  Sum_probs=168.2

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEe-EEEEEEEeCCCchHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFE-KVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~-~~e~~~~~~~~~e~s~~~~   96 (1083)
                      +++++|+||+|++++.+|++++.||++||+++||++++||+|..    .++||+|+|||+ |.|.++|+.+. +++++.+
T Consensus        97 ~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~----~~rGl~R~REF~qq~d~~~~~~~~-~~a~~e~  171 (459)
T 1nj8_A           97 DVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK----HTRPLIRLREIMTFKEAHTAHSTK-EEAENQV  171 (459)
T ss_dssp             EEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS----CCBTTTBCSBCSCEEEEEEEESSH-HHHHHHH
T ss_pred             CCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccC----CCCCceEeeeeeccCcEEEEECCH-HHHHHHH
Confidence            67899999999999999999999999999999999999999983    377999999999 99999988877 7899999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      .+++++|.+||+.|||||++...+..+.++++..++|||+++|+ ++..++++++++|+++|++++++|.+.+|.     
T Consensus       172 ~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~d-g~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~  250 (459)
T 1nj8_A          172 KEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPD-GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAY  250 (459)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECE
T ss_pred             HHHHHHHHHHHHHCCCceEEeecCchhhcCCcccceeEEEEcCC-CcEEEEEEEeecccccccccCeEEECCCCCEeeee
Confidence            99999999999999999999999999999999999999999995 667899999999999999999999876554     


Q ss_pred             cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      .+++|++ +|+|+||+++|+++.|++||..|+|++
T Consensus       251 ~~~~Gig-eRli~alie~~~d~~gl~~P~~laP~q  284 (459)
T 1nj8_A          251 QTCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQ  284 (459)
T ss_dssp             EEEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSS
T ss_pred             EeeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCc
Confidence            4556666 999999999999999999999999987

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=99.93  E-value=3.1e-26  Score=277.05  Aligned_cols=141  Identities=15%  Similarity=0.185  Sum_probs=131.5

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      .+|+.+++++|+||+|.+++.++++++.+|++||+|+||++++||+|.+    +++||+|+|||+|+|++.|+.+. +++
T Consensus        96 ~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~----~~~Gl~R~ReF~q~d~~~f~~~~-~~~  170 (572)
T 2j3l_A           96 LKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR----SRSGLLRGREFIMKDGYSFHADE-ASL  170 (572)
T ss_dssp             EECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS----CCTGGGSCSEEEEEEEEEEESSH-HHH
T ss_pred             EecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC----cccCccccceeEEeeeEEEcCCH-HHH
Confidence            3688899999999999999999999999999999999999999999994    37899999999999999999987 789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLV  163 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i  163 (1083)
                      ++.+.+|+++|.+||++|||+|+++..++|+||+..+|    |+|.++..+..++..|+.|+ |.++...+
T Consensus       171 ~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g~~g~~~s~----E~~~~~~~ge~~~~~~~~~~-~~~~~~~~  236 (572)
T 2j3l_A          171 DQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSK----EFMAISEIGEDTICYSTESD-YAANLEMA  236 (572)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSEE----EEEEECTTCSEEEEEESSSS-CEEETTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEecccccCCCcccE----EEEEEcCCCcceEEEeCCCC-cccchhhh
Confidence            99999999999999999999999999999999999999    99999999999999999999 76665433

>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A

Probab=99.92  E-value=6.3e-26  Score=268.17  Aligned_cols=181  Identities=17%  Similarity=0.104  Sum_probs=166.2

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      +++++|+||+|++++.+|++++.+|++||+++||++++||+|.    + ++||+|+|||+|.|+++|+.+. +++++.+.
T Consensus       103 ~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~----~-~rGl~R~REF~q~d~~~~~~~~-~~ad~E~~  176 (477)
T 1hc7_A          103 EEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEM----R-TRPFLRTSEFLWQEGHTAHATR-EEAEEEVR  176 (477)
T ss_dssp             EEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCS----S-CBTTTBCSEEEEEEEEEEESSH-HHHHHHHH
T ss_pred             CCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCC----C-CCCcceeEEEEEccEEEEeCCH-HHHHHHHH
Confidence            6789999999999999999999999999999999999999998    3 4599999999999999988777 78999999


Q ss_pred             HHHHHHHHHH-HHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         98 EMIQNSEEFY-ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        98 ~~~~~y~~if-~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      .|+++|.+|| +.|||||++...+..+.+.++..+++||+++|+ ++..++++++++|+.+|++++++|.+.+|.     
T Consensus       177 ~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~~ie~~~~d-gr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~  255 (477)
T 1hc7_A          177 RMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVH  255 (477)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECE
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccceEEEEEcCC-CcEEEEeeeEEcccccccccCeEEECCCCCEEeee
Confidence            9999999999 899999999999989999998899999999996 455799999999998999999999876654     


Q ss_pred             cccccccchhheeheeccccCCCeeEecccccccc
Q psy11602        172 IYATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       172 ~n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                      .++.|++ +|+|++|+|+|+++.|++||..|+|++
T Consensus       256 ~~~~Gig-eRli~~lie~~~d~~gl~~P~~laP~q  289 (477)
T 1hc7_A          256 TTSWGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQ  289 (477)
T ss_dssp             EEEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCS
T ss_pred             EeeccHH-HHHHHHHHHHhCccccccCCcccCCce
Confidence            4566777 999999999999999999999999987

>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}

Probab=99.90  E-value=2.4e-24  Score=250.59  Aligned_cols=176  Identities=13%  Similarity=0.119  Sum_probs=142.2

Q ss_pred             eeEec-CChHHHHHHHhcccCCCC-CCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         21 KYLIA-TSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        21 ~~L~p-TsE~~i~~l~~~~i~s~~-~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ++|+| |++.+++. |.++..+++ +||++++||++|||+|++. ..+.+||+|+|||++.|++.|++|+.  ++++++.
T Consensus       147 ~~LRPeTaqg~~~n-fk~~~~s~r~~LP~~iaqig~~FR~E~g~-~~~~~GL~RvrEFtq~E~~~F~~Pe~--~~e~~~~  222 (459)
T 3ikl_A          147 GGLRENLLHGALEH-YVNCLDLVNKRLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFTPPRT--SNQWLDF  222 (459)
T ss_dssp             TB-CSCSHHHHHHH-TTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEEEECGGG--HHHHHHH
T ss_pred             ceECCCCChhHHHH-HhhhhhhccccCCeEEEEEeeeeeccccc-ccCCCCcccccceeeeeEEEEeChhH--HHHHHHH
Confidence            79999 66666655 667788888 9999999999999999752 24557999999999999999999975  8999999


Q ss_pred             HHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccc----eeccCCC-
Q psy11602         99 MIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLV----RYGQTKQ-  170 (1083)
Q Consensus        99 ~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i----~y~~~~~-  170 (1083)
                      +++....||+.||||   ||+++.+..+    |..++|||+|||.  +|.|+.+|+||+||++++...    +|.+.++ 
T Consensus       223 ~~~~~~~~~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~~p~--G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~dg~  296 (459)
T 3ikl_A          223 WLRHRLQWWRKFAMSPSNFSSSDCQDEE----GRKGNKLYYNFPW--GKELIETLWNLGDHELLHMYPGNVSKLHGRDGR  296 (459)
T ss_dssp             HHHHHHHHHHHHCSSGGGEEEEEECCSS----SSCEEEEEEECSS--CEEEEEEEEEEETHHHHHHSCSCSSSSCCBSSS
T ss_pred             HHHHHHHHHHHhCCChhhEEEeecCchH----HHhhcCeEEEcCC--ceEEEeeeeccchhhhhccccccCceeEccCCC
Confidence            999999999999999   9999996555    7789999999997  699999999999999998553    4443332 


Q ss_pred             -----ccccccccchhheeheeccccCCCe-------------eEecccccccc
Q psy11602        171 -----KIYATACATTRVICAILETHQTETG-------------VRIPDCLRKFV  206 (1083)
Q Consensus       171 -----~~n~tg~a~~Rli~Alle~~~~~~G-------------i~lP~~L~p~~  206 (1083)
                           .|..++++++|++.|+|+++.++.|             ++||..|+||+
T Consensus       297 ~k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~q  350 (459)
T 3ikl_A          297 KNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIK  350 (459)
T ss_dssp             CBCCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCC
T ss_pred             eeeeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCce
Confidence                 1778999999999999998777655             89999999998

>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*

Probab=99.89  E-value=8.7e-24  Score=249.18  Aligned_cols=189  Identities=15%  Similarity=0.151  Sum_probs=161.3

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      .+|+++++++|+||+|+.++.+++.++.+|++||+|+||++++||+|+    ++++||+|+|||+|+|+++|+.+. +++
T Consensus       116 ~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~----~p~~Gl~R~REF~q~d~~~f~~~~-~~a  190 (458)
T 2i4l_A          116 IADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQ----RPRFGVMRGREFLMKDAYSFDVDE-AGA  190 (458)
T ss_dssp             EECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCS----SCBTGGGBCSEEEEEEEEEEESSH-HHH
T ss_pred             EEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCC----CCCCCcccccceEEeEEEEEECCH-HHH
Confidence            468899999999999999999999999999999999999999999998    457899999999999999999877 789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeE------EE------------------------------
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDL------EA------------------------------  136 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~di------E~------------------------------  136 (1083)
                      +..|..|+++|.+||++|||+|+++...+|.+|+..++++-+      +.                              
T Consensus       191 d~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~  270 (458)
T 2i4l_A          191 RKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQW  270 (458)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcC
Confidence            999999999999999999999999999999999999886411      00                              


Q ss_pred             -----Ee-----------cCCC------ceeEEEEcCCCchhhhhcccceeccCCCc-----cccccccchhheeheecc
Q psy11602        137 -----WF-----------PGSG------AFRELVSCSNCLDYQSRRLLVRYGQTKQK-----IYATACATTRVICAILET  189 (1083)
Q Consensus       137 -----~~-----------P~~~------~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----~n~tg~a~~Rli~Alle~  189 (1083)
                           ..           |..+      +-++++.+..+|+.+|.+++++|.+.+|.     +.++|++++|+|+||+|+
T Consensus       271 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~~~~gfgiGveRli~al~e~  350 (458)
T 2i4l_A          271 TSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEA  350 (458)
T ss_dssp             HHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHH
T ss_pred             chhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEeceEEeeecccHHHHHHHHHHh
Confidence                 00           1000      11344555555667799999999876654     678899999999999999


Q ss_pred             ccCCCeeEecccccccc
Q psy11602        190 HQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       190 ~~~~~Gi~lP~~L~p~~  206 (1083)
                      ++|++|+.||..++|+.
T Consensus       351 ~~d~~g~~~p~~~ap~~  367 (458)
T 2i4l_A          351 CHDDNGIIWPEAVAPFR  367 (458)
T ss_dssp             SEETTEECCCTTTCSCS
T ss_pred             hccccCCcCCcccCCce
Confidence            99999999999999986

>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}

Probab=99.88  E-value=1.6e-23  Score=243.77  Aligned_cols=171  Identities=13%  Similarity=0.061  Sum_probs=139.0

Q ss_pred             eEEEEeeCCC-CCcchh-hhh-hhhccccccccc----ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        271 VEQFVLTSPH-DDESWK-MLD-EMIQNSEEFYAD----LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       271 ~~~~~~~~~~-~~~s~~-~~~-~~~~~~~~~~~~----~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                      +++..++..+ .-.|++ +|| ++.+...|||..    ...+||||||||+++|++.||+|  ++++++|+.++..++.|
T Consensus       153 Taqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~P--e~~~e~~~~~~~~~~~~  230 (459)
T 3ikl_A          153 LLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPP--RTSNQWLDFWLRHRLQW  230 (459)
T ss_dssp             SHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECG--GGHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeCh--hHHHHHHHHHHHHHHHH
Confidence            4555555443 234676 888 888888899985    56799999999999999999999  68999999999999999


Q ss_pred             HHHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccce----EEecccCCCCceeeEE
Q psy11602        344 YADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLV----RYGQTKKMNEKIEFVH  416 (1083)
Q Consensus       344 ~~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~i----ry~~~~~~~~~~~~~h  416 (1083)
                      |+.||||   ||++.++..+    |.+++|||+|||.  .|+|+.+||||+|||.+++.+    +|.+.   +++.+|+|
T Consensus       231 ~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~~p~--G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~---dg~~k~~P  301 (459)
T 3ikl_A          231 WRKFAMSPSNFSSSDCQDEE----GRKGNKLYYNFPW--GKELIETLWNLGDHELLHMYPGNVSKLHGR---DGRKNVVP  301 (459)
T ss_dssp             HHHHCSSGGGEEEEEECCSS----SSCEEEEEEECSS--CEEEEEEEEEEETHHHHHHSCSCSSSSCCB---SSSCBCCC
T ss_pred             HHHhCCChhhEEEeecCchH----HHhhcCeEEEcCC--ceEEEeeeeccchhhhhccccccCceeEcc---CCCeeeee
Confidence            9999999   9999997666    8899999999997  599999999999999999764    33322   34567899


Q ss_pred             eecccccchhHHHHHHHhhccCCCc-------------eecCccccccC
Q psy11602        417 MLNATACATTRVICAILETHQTETG-------------VRIPDCLRKFV  452 (1083)
Q Consensus       417 tln~t~~a~~R~i~ailEn~q~~~G-------------i~iP~~L~py~  452 (1083)
                      +++.++++++|+++||||++.+++|             +++|..|+||-
T Consensus       302 ~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~q  350 (459)
T 3ikl_A          302 CVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIK  350 (459)
T ss_dssp             EEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCC
T ss_pred             EEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCce
Confidence            9999999999999999999777665             89999999995

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*

Probab=99.86  E-value=1.9e-22  Score=240.07  Aligned_cols=181  Identities=17%  Similarity=0.215  Sum_probs=154.5

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCC-CCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPE-ASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~-~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      ++.++|+|+.+.++.-.|.+++.+| ++||+++||+++|||+|+    ++..||+|+|||+|+|++.|+.++  ++.+++
T Consensus       180 ~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~----~pr~GL~R~REF~q~d~~~f~~~e--~~~~~~  253 (505)
T 1ati_A          180 GLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEI----TPRNFIFRVREFEQMEIEYFVRPG--EDEYWH  253 (505)
T ss_dssp             GGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCS----SCCTGGGSCSEEEEEEEEEEECGG--GHHHHH
T ss_pred             ccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCC----CCCCCCCcccceEEeeEEEEECHH--HHHHHH
Confidence            3467888888888888888899999 999999999999999999    466799999999999999888775  499999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEecc---CCCCcccceeEeEEEEecCCCceeEEEEcCCCchhh-----h----------
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVS---GALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ-----S----------  158 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~s---gdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyq-----s----------  158 (1083)
                      .+++++|.+||++|||+|+.+...+   +++...+..+||+|+|+|.  +|.++..|.+++||+     +          
T Consensus       254 ~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~--~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~  331 (505)
T 1ati_A          254 RYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPH--GSLELEGIAQRTDFDLGSHTKDQEALGITAR  331 (505)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETT--EEEEEEEEEECTTHHHHHHCSSTTTTTCCSC
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCC--CCccchhhhcccceecchhhccccccceeee
Confidence            9999999999999999987777665   5565567788999999995  688999999999998     3          


Q ss_pred             ------hcccceeccCCCc------cccccccchhheeheecccc--------C-CCeeEecccccccc
Q psy11602        159 ------RRLLVRYGQTKQK------IYATACATTRVICAILETHQ--------T-ETGVRIPDCLRKFV  206 (1083)
Q Consensus       159 ------~rl~i~y~~~~~~------~n~tg~a~~Rli~Alle~~~--------~-~~Gi~lP~~L~p~~  206 (1083)
                            ++++++|.+.++.      +.+++++++|+|.||+|++.        + +.|++||..|+|+.
T Consensus       332 ~~~n~~~~~~~~y~d~~g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~  400 (505)
T 1ati_A          332 VLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK  400 (505)
T ss_dssp             CCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS
T ss_pred             ecccccceeEEEEEcCCCCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCce
Confidence                  6889999865332      66788899999999999863        2 45689999999986

>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*

Probab=99.83  E-value=7.9e-21  Score=223.67  Aligned_cols=177  Identities=14%  Similarity=0.201  Sum_probs=141.5

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .+++++|+||+|.+++.+|+++++||++||+||+|+++|||+|.+++   ++||+|+|||+|+|++.|+.++  ++++.+
T Consensus       120 ~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~---~~GL~R~ReF~q~d~~~f~~~e--~~~~e~  194 (460)
T 3uh0_A          120 EKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGA---LSGLTRLRKFHQDDGHIFCTPS--QVKSEI  194 (460)
T ss_dssp             ---CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTT---CBTTTBCSEEEEEEEEEEECGG--GHHHHH
T ss_pred             CCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCC---CCCceeeeeEEEeeEEEEcCHH--HHHHHH
Confidence            46789999999999999999999999999999999999999999532   7899999999999999999875  599999


Q ss_pred             HHHHHHHHHHH-HHcCCc---------eEEEEeccCC---CCcc----------------------------cce--eEe
Q psy11602         97 DEMIQNSEEFY-ADLGIA---------YRVVNIVSGA---LNHA----------------------------AAK--KLD  133 (1083)
Q Consensus        97 ~~~~~~y~~if-~~LgLp---------yrvv~~~sgd---lg~~----------------------------as~--~~d  133 (1083)
                      +++++.+.++| +.||||         |++.. .+..   +|..                            +.+  ++|
T Consensus       195 ~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l-~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid  273 (460)
T 3uh0_A          195 FNSLKLIDIVYNKIFPFVKGGSGAESNYFINF-STRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLD  273 (460)
T ss_dssp             HHHHHHHHHHHTTTSCCC-----CCSSCEEEE-ECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCcccccccceEEEE-ccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEE
Confidence            99999999999 999999         54433 3322   4422                            222  445


Q ss_pred             EEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc------c--ccccccchhheeheeccccCCCeeEeccccccc
Q psy11602        134 LEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK------I--YATACATTRVICAILETHQTETGVRIPDCLRKF  205 (1083)
Q Consensus       134 iE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~------~--n~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~  205 (1083)
                      +.+ ....++..+++++ ..+.+++.||+++|.+.+|.      +  ++.| +++|+|++|+|+|.    .+||..|+|+
T Consensus       274 ~~~-~d~~gr~~q~~Ti-qld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~G-g~eRli~~Lie~~~----g~~P~~laP~  346 (460)
T 3uh0_A          274 IMV-TDHLRKTHQVATI-QLDFQLPERFDLKFKDQDNSYKRPIMIHRATFG-SIERFMALLIDSNE----GRWPFWLNPY  346 (460)
T ss_dssp             EEE-ECTTSCEEEEEEE-EEESHHHHHTTCCEECTTSCEECCEEEEEEEEE-EHHHHHHHHHHHHT----TCCCGGGCSC
T ss_pred             EEE-EccCCCeeeeccc-ccccccccccceEEECCCCCccCcEEEecCcch-HHHHHHHHHHHHcC----CCCCCCCCCc
Confidence            443 3456677777775 56667899999999987764      2  3556 78999999999863    4799999999


Q ss_pred             c
Q psy11602        206 V  206 (1083)
Q Consensus       206 ~  206 (1083)
                      +
T Consensus       347 q  347 (460)
T 3uh0_A          347 Q  347 (460)
T ss_dssp             C
T ss_pred             e
Confidence            7

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.82  E-value=3.6e-22  Score=244.01  Aligned_cols=179  Identities=18%  Similarity=0.286  Sum_probs=137.6

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .|+.+++++|+||+|.+++.+|++++.||++||+|+||+++|||+|.++   +++||+|+|||+|.|++.|+.++  +++
T Consensus       320 ~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g---~~~GL~R~ReF~q~d~~~f~~~~--~~~  394 (642)
T 1qf6_A          320 TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG---SLHGLMRVRGFTQDDAHIFCTEE--QIR  394 (642)
T ss_dssp             EEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGG---GCBTTTBCSEEEEEEEEEEECGG--GHH
T ss_pred             eecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCc---cccCCceeeeEEEccEEEEcCHH--HHH
Confidence            4667789999999999999999999999999999999999999999942   78899999999999999999764  589


Q ss_pred             HHHHHHHHHHHHHHHHcCC-ceEEEEeccCCCCcccceeEeEEEEecCC--------------------Cce----eEE-
Q psy11602         94 KMLDEMIQNSEEFYADLGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGS--------------------GAF----REL-  147 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgL-pyrvv~~~sgdlg~~as~~~diE~~~P~~--------------------~~~----~ev-  147 (1083)
                      +.++++++.+.+||+.||| +|++ .+.+++    +.+..|.|+|.++.                    +.|    .++ 
T Consensus       395 ~e~~~~i~~~~~i~~~lGl~~~~v-~l~~~~----e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~  469 (642)
T 1qf6_A          395 DEVNGCIRLVYDMYSTFGFEKIVV-KLSTRP----EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFT  469 (642)
T ss_dssp             HHHHHHHHHHHHHHGGGTCCCCEE-EEECCC----SSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEE-EEecCc----ccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEE
Confidence            9999999999999999999 8987 555543    11222223332211                    100    000 


Q ss_pred             -----EEcCCCc----hhh-hhcccceeccCCCc-----c-c-cccccchhheeheeccccCCCeeEecccccccc
Q psy11602        148 -----VSCSNCL----DYQ-SRRLLVRYGQTKQK-----I-Y-ATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       148 -----~s~s~cg----dyq-s~rl~i~y~~~~~~-----~-n-~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                           +...+||    ||+ ++|++++|.+.+|.     | + +...+++|+|++|+|+|++    .||..|+|++
T Consensus       470 ~~d~~G~~~~~gti~~df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~~----~~P~~laP~q  541 (642)
T 1qf6_A          470 LYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQ  541 (642)
T ss_dssp             EECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSC
T ss_pred             EEccCCceEEeeeEEEeccCCccCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhcC----CCCcccCCce
Confidence                 1111344    777 99999999876653     2 2 2212789999999999875    7999999987

>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*

Probab=99.81  E-value=1.4e-21  Score=226.66  Aligned_cols=180  Identities=15%  Similarity=0.248  Sum_probs=136.3

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      .|+.+++++|+||+|.+++.++++++.+|++||+|+||+++|||+|.+   .+++||+|+|||+|.|++.|+.+  ++++
T Consensus        79 ~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~---~p~~Gl~R~reF~q~d~~~f~~~--~~~~  153 (401)
T 1evl_A           79 TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS---GSLHGLMRVRGFTQDDAHIFCTE--EQIR  153 (401)
T ss_dssp             EEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG---GGCBTTTBCSEEEEEEEEEEECG--GGHH
T ss_pred             EecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC---cccccccccCcEEecceEEeCCH--HHHH
Confidence            567788999999999999999999999999999999999999999994   16889999999999999999864  5699


Q ss_pred             HHHHHHHHHHHHHHHHcCC-ceEEEEeccCC---CCccc------------------------------ceeEeEEEEec
Q psy11602         94 KMLDEMIQNSEEFYADLGI-AYRVVNIVSGA---LNHAA------------------------------AKKLDLEAWFP  139 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgL-pyrvv~~~sgd---lg~~a------------------------------s~~~diE~~~P  139 (1083)
                      +.|++++++|.+||++||| +|++. +.+++   +|..+                              ..++|+.+.-.
T Consensus       154 ~e~~e~i~~~~~~~~~lgl~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~  232 (401)
T 1evl_A          154 DEVNGCIRLVYDMYSTFGFEKIVVK-LSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDC  232 (401)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSCCEEE-EECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEE-EecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEec
Confidence            9999999999999999999 88874 44443   11100                              01133322111


Q ss_pred             CCCceeEEEEcCCCchhh-hhcccceeccCCCc-----cccccc--cchhheeheeccccCCCeeEecccccccc
Q psy11602        140 GSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKQK-----IYATAC--ATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       140 ~~~~~~ev~s~s~cgdyq-s~rl~i~y~~~~~~-----~n~tg~--a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                       .+..-..+++.  .||+ +++++++|.+.+|.     |...++  +++|+|++|+|+|++    .||..++|+.
T Consensus       233 -~G~~~~~gt~~--~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~----~~p~~~ap~~  300 (401)
T 1evl_A          233 -LDRAWQCGTVQ--LDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQ  300 (401)
T ss_dssp             -TCCEEEEEEEE--EESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSC
T ss_pred             -CCCeEEeeeee--eccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCC----cCCCCCCCeE
Confidence             12212233322  3677 99999999876553     322233  789999999999874    6888888875

>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1

Probab=99.80  E-value=6.8e-20  Score=215.89  Aligned_cols=226  Identities=16%  Similarity=0.223  Sum_probs=179.6

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ceEEEEee
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KVEQFVLT  277 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~~~~~~~  277 (1083)
                      ..|..++-+.+. ..||.++..|+++..+.-.+.               .++.+.+..   .+|++....  +-+.-...
T Consensus        42 ~~i~~~~~~~~~-~~G~~ei~tP~l~~~~l~~~~---------------~G~~~~~~~---emy~~~d~g~~~~~~~l~L  102 (459)
T 1nj8_A           42 RYTFEIIRNLLD-ESGHDEALFPMLIPEDLLAKE---------------AEHIKGFED---EVYWVTHGGKTQLDVKLAL  102 (459)
T ss_dssp             HHHHHHHHHHHH-HTTCEECBCCSEEEHHHHHHH---------------CSSSGGGGG---GCEEEEESSSSEEEEEEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEeeCCcccCHHHHhhh---------------cCcccccch---hhEEEeccCcccCCCeeEE
Confidence            455666655553 789999999999995544221               222222333   456554321  11222223


Q ss_pred             CCCC-----------Ccchhhhh-hhhccccccccccc-CcCceeEEEee-eEEEEE-EeCCCchhHHHHHHHHHHHHHH
Q psy11602        278 SPHD-----------DESWKMLD-EMIQNSEEFYADLD-TRGIFRVHQFE-KVEQFV-LTSPHDDESWKTLDEMIQNSEE  342 (1083)
Q Consensus       278 ~~~~-----------~~s~~~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~-kvE~f~-~~~~~~~~s~~~~e~~~~~~e~  342 (1083)
                      .|..           -.||++|| ++++...+||+.+. ++||+|+|||. +.+... .+++  +++++.+++|+..+.+
T Consensus       103 RP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~--~~a~~e~~~~i~~~~~  180 (459)
T 1nj8_A          103 RPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTK--EEAENQVKEAISIYKK  180 (459)
T ss_dssp             CSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCH--HHHHHHHHHHHHHHHH
Confidence            3321           23788999 99999999999888 99999999999 999765 4555  6889999999999999


Q ss_pred             HHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecccc
Q psy11602        343 FYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA  422 (1083)
Q Consensus       343 ~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~  422 (1083)
                      ||+.|||||++...+..|.++++..++|||+||| .++..|+++++++++++|++++++|.+.   +|+..++|+ +|.|
T Consensus       181 ~~~~LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~-dg~~~e~gt~~~lg~~~s~~~~~~Y~~~---~G~~~~v~~-~~~G  255 (459)
T 1nj8_A          181 FFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETP---TGDKDYAYQ-TCYG  255 (459)
T ss_dssp             HHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECT-TSCEEEEEEEEEEETHHHHHTTCEEECT---TSSEEECEE-EEEE
T ss_pred             HHHHCCCceEEeecCchhhcCCcccceeEEEEcC-CCcEEEEEEEeecccccccccCeEEECC---CCCEeeeeE-eecc
Confidence            9999999999999999999999999999999999 4888999999999999999999999874   456789998 6999


Q ss_pred             cchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        423 CATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       423 ~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      ++ +|+|.||+|+|++++|+++|..|+|+.
T Consensus       256 ig-eRli~alie~~~d~~gl~~P~~laP~q  284 (459)
T 1nj8_A          256 IS-DRVIASIIAIHGDEKGLILPPIVAPIQ  284 (459)
T ss_dssp             EC-THHHHHHHHHHCBTTBCCCCTTSCSSS
T ss_pred             HH-HHHHHHHHHHhCCCceeEcCCcCCCCc
Confidence            99 999999999999999999999999974

>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*

Probab=99.78  E-value=1.4e-19  Score=212.42  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=135.2

Q ss_pred             CCeeEec-CChHHHHHHHhcccCCCC-CCCceEeeeccccc---cccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         19 DDKYLIA-TSEQPICAVHRDSWLPEA-SLPIRYLGVSTCFR---QEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        19 ~~~~L~p-TsE~~i~~l~~~~i~s~~-~LPlklyqi~~~fR---~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      +.++|+| |++ .+...|.+++.+++ +||++++||+++||   +|+    +++.||+|+|||+|.|+++|++|+  ++.
T Consensus       135 ~~~~LRPeta~-g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~----s~~~Gl~R~REF~q~E~~~F~~pe--~~~  207 (454)
T 1g5h_A          135 TSGKLRATLLH-GALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSN----QTPSSVTRVGEKTEASLVWFTPTR--TSS  207 (454)
T ss_dssp             HSCEECSCSHH-HHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-------------CEEEEEEEEEEEEEECHH--HHH
T ss_pred             cceeecccccH-HHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccc----cCCCCccccCceehhheEEEeCHh--hHH
Confidence            4789999 555 45555667777777 99999999999999   699    347899999999999999999864  589


Q ss_pred             HHHHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhh------cccce
Q psy11602         94 KMLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSR------RLLVR  164 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~------rl~i~  164 (1083)
                      ++|+.++..+.++|+.||||   +|..+... +.   +..++|+|+++|.  ++.++..|++++||+.+      +++++
T Consensus       208 e~~~~~~~~~~~~~~~lgi~~~~~r~~~~~~-~~---a~~~~~ie~~~p~--g~~e~~g~~~~td~~l~~~~~~s~~~l~  281 (454)
T 1g5h_A          208 QWLDFWLRHRLLWWRKFAMSPSNFSSADCQD-EL---GRKGSKLYYSFPW--GKEPIETLWNLGDQELLHTYPGNVSTIQ  281 (454)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSGGGEEEEEEEC-TT---SCEEEEEEEEETT--EEEEEEEEEEEESHHHHHHSTTCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHcCCCceeEEecCCHH-HH---HhcCCCcEEecCC--CceEEEEecCCCHHHHHhccCCceeeEE
Confidence            99999999999999999998   66554322 22   5789999999995  67889999999999865      35899


Q ss_pred             eccCCCc----cccccccchhheeheeccccCC-------------CeeEecccccccc
Q psy11602        165 YGQTKQK----IYATACATTRVICAILETHQTE-------------TGVRIPDCLRKFV  206 (1083)
Q Consensus       165 y~~~~~~----~n~tg~a~~Rli~Alle~~~~~-------------~Gi~lP~~L~p~~  206 (1083)
                      |.+.+..    |-.++++++|+|+|||+.+.++             .+++||..|+|+.
T Consensus       282 y~d~~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~q  340 (454)
T 1g5h_A          282 GRDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIK  340 (454)
T ss_dssp             EEETTEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCC
T ss_pred             EECCCCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCe
Confidence            9875421    5456789999998888876442             2689999999987

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*

Probab=99.76  E-value=1.2e-19  Score=216.10  Aligned_cols=163  Identities=18%  Similarity=0.233  Sum_probs=141.7

Q ss_pred             cch-hhhh-hhhcccccccccccCc-CceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccC-
Q psy11602        283 ESW-KMLD-EMIQNSEEFYADLDTR-GIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVS-  358 (1083)
Q Consensus       283 ~s~-~~~~-~~~~~~~~~~~~~~tr-Gl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~-  358 (1083)
                      .|| ++|| ++++...|||+...++ ||+|+|||+++|+..++.|  +++.+.+++|+..+.+||+.|||||++|++.+ 
T Consensus       202 ~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~--e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~  279 (505)
T 1ati_A          202 DATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRP--GEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQ  279 (505)
T ss_dssp             HHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred             HhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECH--HHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            466 7899 9999999999984465 9999999999999999999  68999999999999999999999988787775 


Q ss_pred             --CCcchhhhceeeEEEeeCCCCcEEeeecccCccccc-----c----------------cccceEEecccCCCCceeeE
Q psy11602        359 --GALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQ-----S----------------RRLLVRYGQTKKMNEKIEFV  415 (1083)
Q Consensus       359 --~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~q-----a----------------rrl~iry~~~~~~~~~~~~~  415 (1083)
                        +++.+.+..++|+|+|+|.  .|.|+.+|++++||+     +                +|++++|.+.   +++.+|+
T Consensus       280 ~~~~~~~~~~~~~d~E~~~p~--~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~~~~n~~~~~~~~y~d~---~g~~~y~  354 (505)
T 1ati_A          280 PPESSAHYAKATVDILYRFPH--GSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDP---ETGKWFV  354 (505)
T ss_dssp             CTTTSCTTCSEEEEEEEEETT--EEEEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSCCCEECS---SSCCEEC
T ss_pred             ChHhhhcccHHHHhHHhhcCC--CCccchhhhcccceecchhhccccccceeeeecccccceeEEEEEcC---CCCeeec
Confidence              6677788899999999995  699999999999998     3                7899999875   3456778


Q ss_pred             EeecccccchhHHHHHHHhhccC---------CCceecCccccccC
Q psy11602        416 HMLNATACATTRVICAILETHQT---------ETGVRIPDCLRKFV  452 (1083)
Q Consensus       416 htln~t~~a~~R~i~ailEn~q~---------~~Gi~iP~~L~py~  452 (1083)
                      +++.|.+++++|+|+||+|++++         +.|+++|..|+||.
T Consensus       355 p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~  400 (505)
T 1ati_A          355 PYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK  400 (505)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS
T ss_pred             ceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCce
Confidence            87789999999999999999843         34589999999974

>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A

Probab=99.76  E-value=8.2e-19  Score=207.48  Aligned_cols=226  Identities=16%  Similarity=0.165  Sum_probs=176.3

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc--ceEEEEee
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE--KVEQFVLT  277 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd--~~~~~~~~  277 (1083)
                      ..|..++-+.+ ...||.++..|+++..+.-.+.               .++.+.+.+   .||++....  +.+.-...
T Consensus        48 ~~I~~~~r~~~-~~~G~~ei~tP~l~~~el~~~~---------------sgh~d~f~~---emy~~~d~g~~~l~~~l~L  108 (477)
T 1hc7_A           48 ENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKE---------------AEHVEGFSP---ELAVVTHAGGEELEEPLAV  108 (477)
T ss_dssp             HHHHHHHHHHH-HHTTCEECBCCSEEESTTC------------------------CCT---TCEEEEEESSSEEEEEEEE
T ss_pred             HHHHHHHHHHH-HHcCCEEEecCccccHHHHhhc---------------CCccccccc---ceEEEECCCCccCCCeEEE
Confidence            44555555555 3789999999999984333211               233334444   466654321  12222233


Q ss_pred             CCCC-----------Ccchhhhh-hhhcccccccccccCcCceeEEEeeeEEEEE-EeCCCchhHHHHHHHHHHHHHHHH
Q psy11602        278 SPHD-----------DESWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFV-LTSPHDDESWKTLDEMIQNSEEFY  344 (1083)
Q Consensus       278 ~~~~-----------~~s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~-~~~~~~~~s~~~~e~~~~~~e~~~  344 (1083)
                      .|..           -.||++|| ++++...+||+.+.++||+|+|||.+.|... .+++  +++++.+..|++.+.+||
T Consensus       109 RP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~--~~ad~E~~~~l~~~~~i~  186 (477)
T 1hc7_A          109 RPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATR--EEAEEEVRRMLSIYARLA  186 (477)
T ss_dssp             CSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSH--HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCH--HHHHHHHHHHHHHHHHHH
Confidence            4432           14788999 9999999999998899999999999999998 4555  688999999999999999


Q ss_pred             -HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeeccccc
Q psy11602        345 -ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATAC  423 (1083)
Q Consensus       345 -~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~t~~  423 (1083)
                       +.|||||++..-+..+..+++..++|||+|||. ++..+++++.+++..+|++++++|.+.   +|+..++|+ +|.|+
T Consensus       187 ~~~Lgl~~~~~~~~~~e~~~g~~~~~~ie~~~~d-gr~~~~gt~~~lg~~~s~~~g~~y~~~---~G~~~~~~~-~~~Gi  261 (477)
T 1hc7_A          187 REYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLGENFARAFDIKFQDR---DLQVKYVHT-TSWGL  261 (477)
T ss_dssp             HHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTTCEEECT---TSCEEECEE-EEEEE
T ss_pred             HHhcCCeEEEEeCChHHhcCCcccceEEEEEcCC-CcEEEEeeeEEcccccccccCeEEECC---CCCEEeeeE-eeccH
Confidence             899999999988888999999899999999994 778899999988887899999999865   456679998 58888


Q ss_pred             chhHHHHHHHhhccCCCceecCccccccC
Q psy11602        424 ATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       424 a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      . +|+|++|+|+|++++|+++|..|+|+.
T Consensus       262 g-eRli~~lie~~~d~~gl~~P~~laP~q  289 (477)
T 1hc7_A          262 S-WRFIGAIIMTHGDDRGLVLPPRLAPIQ  289 (477)
T ss_dssp             E-THHHHHHHHHHCBTTBCCCCTTTCSCS
T ss_pred             H-HHHHHHHHHHhCccccccCCcccCCce
Confidence            8 999999999999999999999999974

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.71  E-value=6.6e-19  Score=215.82  Aligned_cols=181  Identities=15%  Similarity=0.209  Sum_probs=135.9

Q ss_pred             CCCCC-CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         14 EKDEL-DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        14 ~dr~~-~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      .|+.+ ++++|+||++.+++.+++++..||++||+|+|+++++||+|..   .+++||+|+|||+|.|++.|+.++  .+
T Consensus       321 ~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~---~~~~GL~R~ReF~Q~d~~~f~~~~--~~  395 (645)
T 1nyr_A          321 MQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS---GAVSGLQRVRGMTLNDSHIFVRPD--QI  395 (645)
T ss_dssp             EEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT---TTCBTTTBCSEEEEEEEEEEECGG--GH
T ss_pred             EecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCC---ccccCcceeeeEEEccEEEEcCHH--HH
Confidence            47778 8999999999999999999999999999999999999999994   267899999999999999999876  47


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-ceEEEEeccCCCCcccceeEeEEEEe---------------------------------
Q psy11602         93 WKMLDEMIQNSEEFYADLGI-AYRVVNIVSGALNHAAAKKLDLEAWF---------------------------------  138 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgL-pyrvv~~~sgdlg~~as~~~diE~~~---------------------------------  138 (1083)
                      .+.|.+++..+.++|+.||| +|++ .+.+..++..+.+..+.|.|.                                 
T Consensus       396 ~d~~~e~i~~~~~~l~~lGl~~~~~-~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~  474 (645)
T 1nyr_A          396 KEEFKRVVNMIIDVYKDFGFEDYSF-RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDV  474 (645)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCEEE-EEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEE-EEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccce
Confidence            78899999999999999999 6876 444444321111111112221                                 


Q ss_pred             --c-CCCceeEEEEcCCCchhh-hhcccceeccCCCc-----c-c-cccccchhheeheeccccCCCeeEecccccccc
Q psy11602        139 --P-GSGAFRELVSCSNCLDYQ-SRRLLVRYGQTKQK-----I-Y-ATACATTRVICAILETHQTETGVRIPDCLRKFV  206 (1083)
Q Consensus       139 --P-~~~~~~ev~s~s~cgdyq-s~rl~i~y~~~~~~-----~-n-~tg~a~~Rli~Alle~~~~~~Gi~lP~~L~p~~  206 (1083)
                        . +.++..++++..  -||+ +++|++.|.+.+|.     | + +...+++|+|++|+|+|++    .||..|+|++
T Consensus       475 ~~~d~lg~~~~~gtiq--~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~~----~~P~~lap~q  547 (645)
T 1nyr_A          475 QVKTAMGKEETLSTAQ--LDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKG----AFPTWLAPKQ  547 (645)
T ss_dssp             EECCTTSCCEEEEEEE--EESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSC
T ss_pred             ehhhhhCchhhcceEE--eecccccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhcC----CCCCCCCCce
Confidence              1 112222322211  2343 89999999876653     2 2 4444689999999999765    7898899986

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.67  E-value=4.8e-18  Score=207.75  Aligned_cols=217  Identities=14%  Similarity=0.201  Sum_probs=163.2

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeC-
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTS-  278 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~-  278 (1083)
                      ..|..++-+.+. ..||.+|..|++...+..+..                ++.+.+.+   .||+ ..-+. +++.+-. 
T Consensus       275 ~~l~~~~r~~~~-~~Gy~ev~tP~l~~~~l~~~s----------------Gh~~~~~~---~my~-~d~~~-~~~~LrP~  332 (642)
T 1qf6_A          275 RELEVFVRSKLK-EYQYQEVKGPFMMDRVLWEKT----------------GHWDNYKD---AMFT-TSSEN-REYCIKPM  332 (642)
T ss_dssp             HHHHHHHHHHHH-HTTCEECCCCSEEETHHHHHH----------------SHHHHHGG---GCEE-EEETT-EEEEECSS
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCcCccHHHHhhc----------------Cccccccc---ccee-eecCC-ceEEecCC
Confidence            566777766664 789999999999996555332                33333344   3565 22111 2222211 


Q ss_pred             ---------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH
Q psy11602        279 ---------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD  346 (1083)
Q Consensus       279 ---------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~  346 (1083)
                               .+...||++|| ++++...|||+...  .+||+|+|||++++...|+.|  +++++.+++++..+.++|+.
T Consensus       333 ~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~--~~~~~e~~~~i~~~~~i~~~  410 (642)
T 1qf6_A          333 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE--EQIRDEVNGCIRLVYDMYST  410 (642)
T ss_dssp             SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH--HHHHHHHHHHHHHHHHHHHH
Confidence                     12235889999 99999999999776  899999999999999999987  57899999999999999999


Q ss_pred             hCC-cEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeeccc------------------------------Ccc----
Q psy11602        347 LGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS------------------------------NCL----  391 (1083)
Q Consensus       347 L~l-pyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~s------------------------------n~~----  391 (1083)
                      ||| ||++ .+++++    +.+..|.|+|.|+.+.++|+.+++                              +|+    
T Consensus       411 lGl~~~~v-~l~~~~----e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~  485 (642)
T 1qf6_A          411 FGFEKIVV-KLSTRP----EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQL  485 (642)
T ss_dssp             GTCCCCEE-EEECCC----SSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEE
T ss_pred             cCCCceEE-EEecCc----ccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEE
Confidence            999 8998 677765    566778899988776666665554                              677    


Q ss_pred             ccc-ccccceEEecccCCCCceeeEE-eecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        392 AYQ-SRRLLVRYGQTKKMNEKIEFVH-MLNATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       392 d~q-arrl~iry~~~~~~~~~~~~~h-tln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      ||| ++|++++|.+..+.....-.+| +++|+   ++|+|++|+|+|+.    .+|..|+|+.
T Consensus       486 df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~---ieR~i~~liE~~~~----~~P~~laP~q  541 (642)
T 1qf6_A          486 DFSLPSRLSASYVGEDNERKVPVMIHRAILGS---MERFIGILTEEFAG----FFPTWLAPVQ  541 (642)
T ss_dssp             ESSHHHHTTCCEECTTSCEECCEEEEEEEEEE---HHHHHHHHHHHHTT----CCCTTTCSSC
T ss_pred             eccCCccCCCEEEecCCCCcCcEEEEeccCCC---HHHHHHHHHHHhcC----CCCcccCCce
Confidence            888 9999999986532111123568 88884   79999999999984    7999999985

>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A

Probab=99.63  E-value=8.5e-17  Score=190.28  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=136.2

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCC---CCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEA---SLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~---~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      |+.++.++|+||+|.+++.++++++.+|+   +||+|+||++++||+|.+++   ++||+|+|||++.+++.|+.++  .
T Consensus        99 d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~---~~Gl~R~REF~Q~~~e~f~~~~--~  173 (471)
T 3a32_A           99 DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGS---IYGLLRVRGFTQDDAHIIVPGG--R  173 (471)
T ss_dssp             EETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGG---CBTTTBCSEEEEEEEEEEEEGG--G
T ss_pred             ecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcc---cccceeEEEEEECCeEEEcChH--H
Confidence            67788999999999999999999999998   99999999999999999542   4899999999999999999876  3


Q ss_pred             HHHHHHHHHHHHHHHHHH-cCC-----ceEEEEeccC-----CCCcccceeE----------------------------
Q psy11602         92 SWKMLDEMIQNSEEFYAD-LGI-----AYRVVNIVSG-----ALNHAAAKKL----------------------------  132 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~-LgL-----pyrvv~~~sg-----dlg~~as~~~----------------------------  132 (1083)
                      +.+.|.+++.+|.++|+. |||     +|+++.....     +-..+....+                            
T Consensus       174 ~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~  253 (471)
T 3a32_A          174 VIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGE  253 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTC
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccc
Confidence            888999999999999999 999     5887655442     2111100000                            


Q ss_pred             ------eEEEEecC----CCceeEEEEcCCCchhhhhcccceecc--CCCc-----cc-cccccchhheeheeccccCCC
Q psy11602        133 ------DLEAWFPG----SGAFRELVSCSNCLDYQSRRLLVRYGQ--TKQK-----IY-ATACATTRVICAILETHQTET  194 (1083)
Q Consensus       133 ------diE~~~P~----~~~~~ev~s~s~cgdyqs~rl~i~y~~--~~~~-----~n-~tg~a~~Rli~Alle~~~~~~  194 (1083)
                            .++..+..    .+...++++ ...+...++.|+++|-+  .+|+     ++ +.+.+++|+|+++|+++.   
T Consensus       254 ~~~~gp~i~~~l~d~~~~l~~~~~~g~-~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~~~i~GgieRli~~lie~~~---  329 (471)
T 3a32_A          254 AAFYGPKLDFIMMVEESGVSKEWQMGT-IQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRR---  329 (471)
T ss_dssp             SBTTBCEEEEEEEEESSSCEEEEEEEE-EEEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTT---
T ss_pred             hhhCCCccceEEeccHHhhhhhheeee-EEecccccccCCceEeccccCCceeeEEEeccccCcHHHHHHHHHHHhC---
Confidence                  23444432    234444442 23344468999998877  3333     32 233378999999999864   


Q ss_pred             eeEecccccccc
Q psy11602        195 GVRIPDCLRKFV  206 (1083)
Q Consensus       195 Gi~lP~~L~p~~  206 (1083)
                      | .||..++|+.
T Consensus       330 g-~~p~~~ap~q  340 (471)
T 3a32_A          330 G-RMPFTLAPIQ  340 (471)
T ss_dssp             T-CCCGGGCSCS
T ss_pred             C-CCCCCcCCce
Confidence            3 7898888876

>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*

Probab=99.55  E-value=3.7e-16  Score=181.20  Aligned_cols=213  Identities=15%  Similarity=0.217  Sum_probs=146.4

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeC-
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTS-  278 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~-  278 (1083)
                      .+|..++.+.+. ..||.+|..|++...+..+..+                +.+.+.+   .||+ ..-+. +++.+-. 
T Consensus        34 ~~i~~~~~~~~~-~~G~~ei~tP~l~~~~l~~~sG----------------~~~~~~~---em~~-~d~~~-~~~~LrP~   91 (401)
T 1evl_A           34 RELEVFVRSKLK-EYQYQEVKGPFMMDRVLWEKTG----------------HWDNYKD---AMFT-TSSEN-REYCIKPM   91 (401)
T ss_dssp             HHHHHHHHHHHH-HTTCEECBCCSEEEHHHHHHHT----------------HHHHSGG---GCCE-EEETT-EEEEECSC
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCeeccHHHHHhcC----------------cHhhhch---hhEe-EecCC-ceEEEcCC
Confidence            556666655553 7899999999999966554322                2222222   2444 11111 1222111 


Q ss_pred             ---------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH
Q psy11602        279 ---------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD  346 (1083)
Q Consensus       279 ---------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~  346 (1083)
                               .+.-.||++|| ++++...|||+.+.  .+||+|+|||+++|...++.+  +++++.+++++..+.++|+.
T Consensus        92 ~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~--~~~~~e~~e~i~~~~~~~~~  169 (401)
T 1evl_A           92 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE--EQIRDEVNGCIRLVYDMYST  169 (401)
T ss_dssp             SHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCH--HHHHHHHHHHHHHHHHHHHH
Confidence                     11235788899 99999999999875  899999999999999999875  68899999999999999999


Q ss_pred             hCC-cEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeeccc------------------------------Ccc----
Q psy11602        347 LGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS------------------------------NCL----  391 (1083)
Q Consensus       347 L~l-pyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~s------------------------------n~~----  391 (1083)
                      ||| ||++ .+.+++    +.+..|.|+|+++.+.+.++.+++                              +|+    
T Consensus       170 lgl~~~~~-~~~~~~----~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~  244 (401)
T 1evl_A          170 FGFEKIVV-KLSTRP----EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQL  244 (401)
T ss_dssp             TTCSCCEE-EEECCC----SSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEE
T ss_pred             cCCCceEE-EEecCC----cccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeee
Confidence            999 8998 566665    344555556654433222221111                              233    


Q ss_pred             ccc-ccccceEEecccCCCCcee---eEE-eecccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        392 AYQ-SRRLLVRYGQTKKMNEKIE---FVH-MLNATACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       392 d~q-arrl~iry~~~~~~~~~~~---~~h-tln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      ||| ++|++++|.+.   +|+..   .+| +++|   .++|+|++|+|+|+.    .+|..++|+
T Consensus       245 d~~l~~~~~~~y~~~---~g~~~~p~~~~~~~~G---gieRli~~l~e~~~~----~~p~~~ap~  299 (401)
T 1evl_A          245 DFSLPSRLSASYVGE---DNERKVPVMIHRAILG---SMERFIGILTEEFAG----FFPTWLAPV  299 (401)
T ss_dssp             ESSHHHHTTCCEECT---TSCEECCEEEEEEEEE---EHHHHHHHHHHHHTT----CCCTTTCSS
T ss_pred             ccccccccCCEEECC---CCCCcCcEEEEecCCC---cHHHHHHHHHHHhCC----cCCCCCCCe
Confidence            899 99999999865   33333   456 6666   379999999999984    688888885

>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*

Probab=99.55  E-value=5.8e-15  Score=173.45  Aligned_cols=156  Identities=13%  Similarity=0.061  Sum_probs=123.8

Q ss_pred             chh-hhh-hhhcccccccc---c-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc---EEEE
Q psy11602        284 SWK-MLD-EMIQNSEEFYA---D-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA---YRVV  354 (1083)
Q Consensus       284 s~~-~~~-~~~~~~~~~~~---~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp---yRvv  354 (1083)
                      |++ +|| ++.+...|||.   . +-..||+|+|+|++.|+..||+|  +++.++|+.++..+..||+.||||   ||..
T Consensus       157 s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~p--e~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~  234 (454)
T 1g5h_A          157 LVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPT--RTSSQWLDFWLRHRLLWWRKFAMSPSNFSSA  234 (454)
T ss_dssp             HTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECH--HHHHHHHHHHHHHHHHHHHTTCSSGGGEEEE
T ss_pred             hcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCH--hhHHHHHHHHHHHHHHHHHHcCCCceeEEec
Confidence            445 788 88888889993   3 33689999999999999999998  789999999999999999999999   8876


Q ss_pred             eccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccc------cceEEecccCCCCceeeEEeecccccchhHH
Q psy11602        355 NIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRR------LLVRYGQTKKMNEKIEFVHMLNATACATTRV  428 (1083)
Q Consensus       355 ~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarr------l~iry~~~~~~~~~~~~~htln~t~~a~~R~  428 (1083)
                      .... +.   |..++|||+|+|.  .|+|+.+|+|++||+.++      ++|+|.+.    ++...+|+++ +++.++|+
T Consensus       235 ~~~~-~~---a~~~~~ie~~~p~--g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d~----~~~~~P~vi~-~s~Gv~R~  303 (454)
T 1g5h_A          235 DCQD-EL---GRKGSKLYYSFPW--GKEPIETLWNLGDQELLHTYPGNVSTIQGRDG----RKNVVPCVLS-VSGDVDLG  303 (454)
T ss_dssp             EEEC-TT---SCEEEEEEEEETT--EEEEEEEEEEEESHHHHHHSTTCGGGSCEEET----TEEECCEEEE-EEEEHHHH
T ss_pred             CCHH-HH---HhcCCCcEEecCC--CceEEEEecCCCHHHHHhccCCceeeEEEECC----CCcEeeEEEe-CcccHHHH
Confidence            6422 22   6899999999995  689999999999999764      49999863    2245588885 46899999


Q ss_pred             HHHHHhhccCC-------------CceecCccccccC
Q psy11602        429 ICAILETHQTE-------------TGVRIPDCLRKFV  452 (1083)
Q Consensus       429 i~ailEn~q~~-------------~Gi~iP~~L~py~  452 (1083)
                      |+||||++.++             .|+++|..|+|+-
T Consensus       304 i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~q  340 (454)
T 1g5h_A          304 TLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIK  340 (454)
T ss_dssp             HHHHHHHHEEC------------CCEECCCTTTCSCC
T ss_pred             HHHHHHHhcchhhcccccCCcccceeEecCcccCCCe
Confidence            99999877553             2589999999963

>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*

Probab=99.51  E-value=2.2e-14  Score=168.95  Aligned_cols=223  Identities=14%  Similarity=0.222  Sum_probs=157.7

Q ss_pred             eeEecccccccccccc-cCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ceE
Q psy11602        195 GVRIPDCLRKFVPAVY-LNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KVE  272 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~-~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~~  272 (1083)
                      |+.+-.+|..|+.+.+ . ..||.+|..|+++..+..++                .++.+.+.+   .||.+...+ .=+
T Consensus        63 g~~l~~~l~~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~----------------sGh~~~~~~---emy~~~d~~~~~~  122 (460)
T 3uh0_A           63 GAKIFNKLIEFMKLQQKF-KFGFNEVVTPLIYKKTLWEK----------------SGHWENYAD---DMFKVETTDEEKE  122 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TSCCEECCCCSEEEHHHHHH----------------HTCTTTSGG---GSCEECC------
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCEEEECCeeccHHHHHh----------------cCCcccccc---ceEEEecCCCCCc
Confidence            3444477888887776 5 78999999999999555533                234444444   455554311 001


Q ss_pred             EEEe--------eC--CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602        273 QFVL--------TS--PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       273 ~~~~--------~~--~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~  339 (1083)
                      .+.+        +.  -+.-.||++|| ++++...|||+.+.  ++||+|+|||+++|++.|+.|  +++++++++++..
T Consensus       123 ~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~--e~~~~e~~~~i~~  200 (460)
T 3uh0_A          123 EYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTP--SQVKSEIFNSLKL  200 (460)
T ss_dssp             CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHH
T ss_pred             eEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCH--HHHHHHHHHHHHH
Confidence            1111        11  12235789999 99999999999766  699999999999999999998  6899999999999


Q ss_pred             HHHHH-HHhCCc---------EEEEeccCCC---cch----------------------------hhhc--eeeEEEeeC
Q psy11602        340 SEEFY-ADLGIA---------YRVVNIVSGA---LNH----------------------------AAAK--KLDLEAWFP  376 (1083)
Q Consensus       340 ~e~~~-~~L~lp---------yRvv~~~~~d---l~~----------------------------~a~~--~~DiE~w~P  376 (1083)
                      +.++| +.||||         |+|.. .+..   +|.                            +|+.  ++|+.+ ..
T Consensus       201 ~~~~~~~~lGl~~~~~~~~~~~~~~l-~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~-~d  278 (460)
T 3uh0_A          201 IDIVYNKIFPFVKGGSGAESNYFINF-STRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMV-TD  278 (460)
T ss_dssp             HHHHHTTTSCCC-----CCSSCEEEE-ECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEE-EC
T ss_pred             HHHHHHHHcCCCCcccccccceEEEE-ccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEE-Ec
Confidence            99999 999999         76654 3311   231                            1222  456654 36


Q ss_pred             CCCcEEeeecccCcccc-cccccceEEecccCCCCcee---eEEeecccccchhHHHHHHHhhccCCCceecCccccccC
Q psy11602        377 GSGAFRELVSCSNCLAY-QSRRLLVRYGQTKKMNEKIE---FVHMLNATACATTRVICAILETHQTETGVRIPDCLRKFV  452 (1083)
Q Consensus       377 ~~~~y~Ev~S~sn~~d~-qarrl~iry~~~~~~~~~~~---~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py~  452 (1083)
                      +.|+..+++++  -.|| .+.|+++.|.+.   +++..   .+|+- +.| .++|+|++|+|+|.    .++|..|+|+-
T Consensus       279 ~~gr~~q~~Ti--qld~~~~~rf~l~y~~~---~g~~~~P~~ih~~-~~G-g~eRli~~Lie~~~----g~~P~~laP~q  347 (460)
T 3uh0_A          279 HLRKTHQVATI--QLDFQLPERFDLKFKDQ---DNSYKRPIMIHRA-TFG-SIERFMALLIDSNE----GRWPFWLNPYQ  347 (460)
T ss_dssp             TTSCEEEEEEE--EEESHHHHHTTCCEECT---TSCEECCEEEEEE-EEE-EHHHHHHHHHHHHT----TCCCGGGCSCC
T ss_pred             cCCCeeeeccc--ccccccccccceEEECC---CCCccCcEEEecC-cch-HHHHHHHHHHHHcC----CCCCCCCCCce
Confidence            78888888875  3455 688999999876   34444   45543 666 78999999999884    57899899873

>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*

Probab=99.42  E-value=1.5e-13  Score=161.94  Aligned_cols=226  Identities=13%  Similarity=0.184  Sum_probs=155.2

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeCC
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTSP  279 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~~  279 (1083)
                      .+|..++-+.+ ...||.+|..|++...+.-...+                +.+.+.+   .||++..-.. .++.+ .|
T Consensus        71 ~~i~~~ir~~~-~~~G~~ei~tP~l~~~el~~~sg----------------~~d~~~~---em~~~~d~~~-~~~~L-rP  128 (458)
T 2i4l_A           71 KKIEQIVREEQ-NRAGAIELLMPTLQLADLWRESG----------------RYDAYGP---EMLRIADRHK-RELLY-GP  128 (458)
T ss_dssp             HHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHT----------------HHHHSCT---TSEEEECTTC-CEEEE-CS
T ss_pred             HHHHHHHHHHH-HHcCCEEEEcCccCcHHHHHhcC----------------Ccccccc---ceEEEEeCCC-CeEEE-CC
Confidence            45555555555 37899999999999965553222                1222223   3555543211 12221 22


Q ss_pred             C-----------CCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH
Q psy11602        280 H-----------DDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD  346 (1083)
Q Consensus       280 ~-----------~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~  346 (1083)
                      .           .-.||++|| ++++...+||+. +...||+|+|||++++...|..+. +++++.+.+|+..+.++|+.
T Consensus       129 t~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~-~~ad~e~~~~~~~~~~i~~~  207 (458)
T 2i4l_A          129 TNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDE-AGARKSYNKMFVAYLRTFAR  207 (458)
T ss_dssp             CCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSH-HHHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCH-HHHHHHHHHHHHHHHHHHHH
Confidence            0           123678889 999999999998 667899999999999999998654 67889999999999999999


Q ss_pred             hCCcEEEEeccCCCcchhhhcee--------eE---------EEeeCCCCc--------------EEeee-------cc-
Q psy11602        347 LGIAYRVVNIVSGALNHAAAKKL--------DL---------EAWFPGSGA--------------FRELV-------SC-  387 (1083)
Q Consensus       347 L~lpyRvv~~~~~dl~~~a~~~~--------Di---------E~w~P~~~~--------------y~Ev~-------S~-  387 (1083)
                      |||+|+++...++.+|...+..+        |.         +.|......              +..+.       .| 
T Consensus       208 lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~  287 (458)
T 2i4l_A          208 MGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYE  287 (458)
T ss_dssp             TTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHH
T ss_pred             cCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhccccccc
Confidence            99999999988888776654321        10         111111111              11111       01 


Q ss_pred             -cCcc-------------cc-----cccccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecCccc
Q psy11602        388 -SNCL-------------AY-----QSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIPDCL  448 (1083)
Q Consensus       388 -sn~~-------------d~-----qarrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP~~L  448 (1083)
                       .+|+             .|     .|.++++||.+.   +|+...+|+ +|+|+.+.|+|+||+|++++++|+.+|..+
T Consensus       288 ~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~---~G~~~p~~~-~gfgiGveRli~al~e~~~d~~g~~~p~~~  363 (458)
T 2i4l_A          288 SEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGP---DGTDAPIHG-GSYGVGVSRLLGAIIEACHDDNGIIWPEAV  363 (458)
T ss_dssp             HHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECT---TSCEEECEE-EEEEEEHHHHHHHHHHHSEETTEECCCTTT
T ss_pred             CCCCCcCceeeeeeccCcEEEecccccccCCcEEECC---CCCEeceEE-eeecccHHHHHHHHHHhhccccCCcCCccc
Confidence             2232             33     488999999754   455666665 699999999999999999999999999999


Q ss_pred             cccC
Q psy11602        449 RKFV  452 (1083)
Q Consensus       449 ~py~  452 (1083)
                      +||-
T Consensus       364 ap~~  367 (458)
T 2i4l_A          364 APFR  367 (458)
T ss_dssp             CSCS
T ss_pred             CCce
Confidence            9973

>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A

Probab=99.35  E-value=8.6e-13  Score=162.00  Aligned_cols=124  Identities=21%  Similarity=0.277  Sum_probs=99.9

Q ss_pred             CCCeeEecCChHHHHHHHhcccCC-CCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH----
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLP-EASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES----   92 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s-~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s----   92 (1083)
                      ++.++|+|---.++.-.|.+...+ |++||+++|||+++||+|+    +++.||+|+|||+|.|+++|+.|+. ..    
T Consensus       237 ~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEi----sPr~GLlR~REF~q~d~e~F~~p~~-~~~~~y  311 (693)
T 2zt5_A          237 NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEI----SPRSGLIRVREFTMAEIEHFVDPSE-KDHPKF  311 (693)
T ss_dssp             SSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCS----SCCSGGGSCSEEEEEEEEEEECTTC-CCCTTG
T ss_pred             CcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCC----CCCCCCccceeeEEccceEEeCcch-hcchhH
Confidence            468999995555677777777765 8999999999999999999    5678999999999999999998874 21    


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeE
Q psy11602         93 -------------------------------------WKMLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKL  132 (1083)
Q Consensus        93 -------------------------------------~~~~~~~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~  132 (1083)
                                                           .+++..++..+..||..|||+   ++.......++...+...+
T Consensus       312 ~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~  391 (693)
T 2zt5_A          312 QNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCW  391 (693)
T ss_dssp             GGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEE
T ss_pred             HHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhh
Confidence                                                 255777888999999999997   5665555667878888899


Q ss_pred             eEEEEecCCCceeEEE
Q psy11602        133 DLEAWFPGSGAFRELV  148 (1083)
Q Consensus       133 diE~~~P~~~~~~ev~  148 (1083)
                      |+|+.+|.  ++.++.
T Consensus       392 d~e~~~~~--g~~e~~  405 (693)
T 2zt5_A          392 DAESKTSY--GWIEIV  405 (693)
T ss_dssp             EEEEEETT--EEEEEE
T ss_pred             hehhhccC--ChHHHH
Confidence            99998863  355543

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.33  E-value=9.1e-14  Score=170.40  Aligned_cols=220  Identities=13%  Similarity=0.204  Sum_probs=147.6

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEeeC-
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLTS-  278 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~~-  278 (1083)
                      ..|..++-+.+. ..||.+|..|++...+..+..+                +.+.+.+   .||+...-+.-+++.+-. 
T Consensus       275 ~~l~~~ir~~~~-~~Gy~eV~tP~l~~~~l~~~sG----------------~~d~~~~---~mf~~~d~~~~~~~~LrP~  334 (645)
T 1nyr_A          275 REIERYIVDKEV-SMGYDHVYTPVLANVDLYKTSG----------------HWDHYQE---DMFPPMQLDETESMVLRPM  334 (645)
T ss_dssp             HHHHHHHHHHHH-HTTEEECBCCSEEETHHHHHHT----------------HHHHCTT---SSCCCEEETTTEEEEECSS
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCeeccHHHHhhCC----------------Ccccccc---CcceeEecCCCeEEEeCCC
Confidence            455566655553 7899999999999966553322                2222223   344432211101222111 


Q ss_pred             ---------CCCCcchhhhh-hhhccccccccccc--CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHH
Q psy11602        279 ---------PHDDESWKMLD-EMIQNSEEFYADLD--TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYAD  346 (1083)
Q Consensus       279 ---------~~~~~s~~~~~-~~~~~~~~~~~~~~--trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~  346 (1083)
                               -+...||++|| ++++...|||+.+.  .+||+|+|||++.+...|+.|  +++.+.+.+++..+.++|+.
T Consensus       335 ~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~--~~~~d~~~e~i~~~~~~l~~  412 (645)
T 1nyr_A          335 NCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRP--DQIKEEFKRVVNMIIDVYKD  412 (645)
T ss_dssp             SHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCH--HHHHHHHHHHHHHHHHHHHH
Confidence                     11235788999 99999999999766  399999999999999999988  56788899999999999999


Q ss_pred             hCC-cEEEEeccCCCcchhhhceeeEEEeeCC------------------------------------CCcEEeeecccC
Q psy11602        347 LGI-AYRVVNIVSGALNHAAAKKLDLEAWFPG------------------------------------SGAFRELVSCSN  389 (1083)
Q Consensus       347 L~l-pyRvv~~~~~dl~~~a~~~~DiE~w~P~------------------------------------~~~y~Ev~S~sn  389 (1083)
                      ||| +|++ .+++.+++..+....|.|+|.++                                    .++.-++++.  
T Consensus       413 lGl~~~~~-~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gti--  489 (645)
T 1nyr_A          413 FGFEDYSF-RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTA--  489 (645)
T ss_dssp             TTCCCEEE-EEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEE--
T ss_pred             cCCCeEEE-EEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceE--
Confidence            999 7988 56666655444444555555432                                    1222222211  


Q ss_pred             ccccc-ccccceEEecccCCCCceeeEEeec-ccccchhHHHHHHHhhccCCCceecCcccccc
Q psy11602        390 CLAYQ-SRRLLVRYGQTKKMNEKIEFVHMLN-ATACATTRVICAILETHQTETGVRIPDCLRKF  451 (1083)
Q Consensus       390 ~~d~q-arrl~iry~~~~~~~~~~~~~htln-~t~~a~~R~i~ailEn~q~~~Gi~iP~~L~py  451 (1083)
                      -.||+ ++|+++.|.+.   +|+...++++. |.+..++|+|++|+|+|+.    .+|..|+|+
T Consensus       490 q~D~~l~~~~d~~Y~~~---~g~~~~P~~ih~~~~GgieR~i~~liE~~~~----~~P~~lap~  546 (645)
T 1nyr_A          490 QLDFLLPERFDLTYIGQ---DGEHHRPVVIHRGVVSTMERFVAFLTEETKG----AFPTWLAPK  546 (645)
T ss_dssp             EEESSHHHHTTCCEECT---TSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSS
T ss_pred             EeecccccccceEEECC---CCCccCcEEEEeccCCcHHHHHHHHHHHhcC----CCCCCCCCc
Confidence            13666 89999999865   34455565544 3333589999999999874    789989886

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=99.32  E-value=1.3e-12  Score=125.61  Aligned_cols=101  Identities=24%  Similarity=0.530  Sum_probs=83.4

Q ss_pred             eeeccccCCCCCCCC-----ceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCC
Q psy11602        631 LVCCVCLGERSDDVN-----EIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDV  705 (1083)
Q Consensus       631 ~~c~~c~g~~~~~~~-----~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~  705 (1083)
                      .+|.+|+++...|.+     .|+.|++|+.++|+.|+.....++..+..+  .|++.++.       .|.||...  +++
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~--~W~C~~C~-------~C~~C~~~--~~~   70 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY--KWQCIECK-------SCILCGTS--END   70 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT--TCCCGGGC-------CCTTTTCC--TTT
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC--ccCccccC-------ccCccccc--CCC
Confidence            369999998766643     599999999999999998776666655666  89998876       89999854  457


Q ss_pred             CcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        706 NEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       706 n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      +.||.||.|..+||..|+++....        .|.+.|+|..|..
T Consensus        71 ~~ll~Cd~C~~~yH~~Cl~ppl~~--------~P~g~W~C~~C~~  107 (114)
T 2kwj_A           71 DQLLFCDDCDRGYHMYCLNPPVAE--------PPEGSWSCHLCWE  107 (114)
T ss_dssp             TTEEECSSSCCEEETTTSSSCCSS--------CCSSCCCCHHHHH
T ss_pred             CceEEcCCCCccccccccCCCccC--------CCCCCeECccccc
Confidence            899999999999999999975542        2789999999964

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=99.25  E-value=7.4e-12  Score=120.05  Aligned_cols=102  Identities=24%  Similarity=0.573  Sum_probs=81.5

Q ss_pred             eeeccccCCCCCCCC----ceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCC
Q psy11602        631 LVCCVCLGERSDDVN----EIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVN  706 (1083)
Q Consensus       631 ~~c~~c~g~~~~~~~----~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n  706 (1083)
                      .+|.+|++....|++    .|+.|++|+.++|..|+.....+...+..+  .|++.+++       .|.||... ..+++
T Consensus         6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~--~W~C~~C~-------~C~vC~~~-~~~~~   75 (112)
T 3v43_A            6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL--RWQCIECK-------TCSSCRDQ-GKNAD   75 (112)
T ss_dssp             SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS--CCCCTTTC-------CBTTTCCC-CCTTC
T ss_pred             ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc--ccccccCC-------ccccccCc-CCCcc
Confidence            379999998766544    399999999999999997544444445555  99998887       99999954 23567


Q ss_pred             cEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        707 EIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       707 ~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      +||.||.|..+||..|+.+....        .|.+.|+|..|+.
T Consensus        76 ~ll~Cd~C~~~yH~~Cl~p~l~~--------~P~~~W~C~~C~~  111 (112)
T 3v43_A           76 NMLFCDSCDRGFHMECCDPPLTR--------MPKGMWICQICRP  111 (112)
T ss_dssp             CCEECTTTCCEECGGGCSSCCSS--------CCSSCCCCTTTSC
T ss_pred             ceEEcCCCCCeeecccCCCCCCC--------CCCCCeECCCCCC
Confidence            99999999999999999876442        2789999999964

>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1

Probab=99.04  E-value=2.4e-10  Score=132.95  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=80.4

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCC-CCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPE-ASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~-~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      ..|+.++.++|+||++.+++.+++++..++ ++||+|+|+++++||+|....       .|+|||++.+.+.|+.+. ..
T Consensus        67 ~~D~~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~-------gR~reF~q~~~e~~~~~~-~~  138 (420)
T 1qe0_A           67 FKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK-------GRYRQFNQFGVEAIGAEN-PS  138 (420)
T ss_dssp             ECHHHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------------CCEEEEEEEEEESCCC-HH
T ss_pred             EEcCCCCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcC-------CCcccEEEeeEEEECCCC-ch
Confidence            468889999999999999999999999999 999999999999999995322       499999999999999988 45


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCc-eEEEEe
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIA-YRVVNI  119 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLp-yrvv~~  119 (1083)
                      ++   .+++..+.++|++|||+ |+++..
T Consensus       139 ~d---~e~i~~~~~~l~~lgl~~~~i~l~  164 (420)
T 1qe0_A          139 VD---AEVLAMVMHIYQSFGLKHLKLVIN  164 (420)
T ss_dssp             HH---HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             hH---HHHHHHHHHHHHHcCCCceEEEEc
Confidence            54   77889999999999998 766543

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.97  E-value=4.6e-10  Score=107.35  Aligned_cols=101  Identities=26%  Similarity=0.486  Sum_probs=77.3

Q ss_pred             CCceeeccccCCCCCCCCceeeccCCCCcccccchhhhHHHHHHhhhhcccceecccccCCCCCccccccCCCCCCCCCc
Q psy11602        628 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQEFLAIKFLIRYLLFWFQLEDFSKFSKILVCCVCLGERSDDVNE  707 (1083)
Q Consensus       628 ~~~~~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~~~~~i~~~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~  707 (1083)
                      .+-.+|.+|...  .++..|+.|+.|+..+|..|+......   +.  ...|++.++.       .|.||...  .+++.
T Consensus         5 ~~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~---~~--~~~W~C~~C~-------~C~~C~~~--~~~~~   68 (111)
T 2ysm_A            5 SSGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTP---LK--RAGWQCPECK-------VCQNCKQS--GEDSK   68 (111)
T ss_dssp             CCCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCT---TT--STTCCCTTTC-------CCTTTCCC--SCCTT
T ss_pred             CCCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCcccc---cc--ccCccCCcCC-------cccccCcc--CCCCC
Confidence            344579999654  455678999999999999999543211   12  2489997766       89999954  44679


Q ss_pred             EEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        708 IVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       708 iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ||.|+.|+..||..|+.+....        .|.+.|+|..|....
T Consensus        69 ll~Cd~C~~~yH~~Cl~ppl~~--------~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           69 MLVCDTCDKGYHTFCLQPVMKS--------VPTNGWKCKNCRICI  105 (111)
T ss_dssp             EEECSSSCCEEEGGGSSSCCSS--------CCSSCCCCHHHHCCS
T ss_pred             eeECCCCCcHHhHHhcCCcccc--------CCCCCcCCcCCcCcC
Confidence            9999999999999999976542        277899999997643

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=98.93  E-value=6.5e-10  Score=134.49  Aligned_cols=171  Identities=12%  Similarity=0.230  Sum_probs=130.2

Q ss_pred             ecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEee
Q psy11602        198 IPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVLT  277 (1083)
Q Consensus       198 lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~~  277 (1083)
                      +-.+|..++.+.+. ..||.+|..|++...+..+..                ++.+.+.+   .||++..-.. +++.+ 
T Consensus        49 ~~~~i~~~~~~~~~-~~G~~ei~tP~l~~~~l~~~s----------------G~~~~~~~---~m~~~~d~~~-~~~~L-  106 (572)
T 2j3l_A           49 VLEKLKTIMREEFE-KIDAVEMLMPALLPAELWKES----------------GRYETYGP---NLYRLKDRND-RDYIL-  106 (572)
T ss_dssp             HHHHHHHHHHHHHH-TTTCEECBCCSEEETHHHHHH----------------SHHHHSCT---TSCEEECTTC-CEEEE-
T ss_pred             HHHHHHHHHHHHHH-HcCCEEEECCccccHHHHHhc----------------CCccccch---heEEEecCCC-CeEEE-
Confidence            33666777766664 789999999999995544322                22233333   4555432211 12222 


Q ss_pred             CCCC-----------Ccchhhhh-hhhccccccccccc-CcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHH
Q psy11602        278 SPHD-----------DESWKMLD-EMIQNSEEFYADLD-TRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFY  344 (1083)
Q Consensus       278 ~~~~-----------~~s~~~~~-~~~~~~~~~~~~~~-trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~  344 (1083)
                      .|..           -.||++|| ++++...|||+.+. .+||+|+|||++++...|+.+. +++++.+.+|+..+.++|
T Consensus       107 rP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~-~~~~~e~~~~~~~~~~~~  185 (572)
T 2j3l_A          107 GPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADE-ASLDQSYRDYEKAYSRIF  185 (572)
T ss_dssp             CSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSH-HHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCH-HHHHHHHHHHHHHHHHHH
Confidence            2211           14788899 99999999999877 6899999999999999999964 688999999999999999


Q ss_pred             HHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCccccccc
Q psy11602        345 ADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSR  396 (1083)
Q Consensus       345 ~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qar  396 (1083)
                      +.|||||+++..++|+||...+    -|.|.|+.....+|.+|+.|+ |.++
T Consensus       186 ~~lgl~~~~~~~~~g~~g~~~s----~E~~~~~~~ge~~~~~~~~~~-~~~~  232 (572)
T 2j3l_A          186 ERCGLEFRAIIGDGGAMGGKDS----KEFMAISEIGEDTICYSTESD-YAAN  232 (572)
T ss_dssp             HHTTCCEEEEECCGGGGTCSSE----EEEEEECTTCSEEEEEESSSS-CEEE
T ss_pred             HHcCCcEEEEecccccCCCccc----EEEEEEcCCCcceEEEeCCCC-cccc
Confidence            9999999999999999998754    699999999999999999987 4443

>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A

Probab=98.86  E-value=1.4e-09  Score=128.76  Aligned_cols=223  Identities=13%  Similarity=0.171  Sum_probs=140.9

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQF  274 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~  274 (1083)
                      |+.+-..|..++.+.+. ..||.+|.+|++...+.-..                .++.+.+.+   .||++ .-+. +.+
T Consensus        48 g~~~~~~i~~~~~~~~~-~~G~~ei~tP~l~~~~l~~~----------------sg~~~~~~~---emy~~-d~~~-~~l  105 (471)
T 3a32_A           48 GGPIRYALAEVLAKFHA-RRGYYVVETPIIASTELFKV----------------SGHIEFYRN---NMYLF-DIEG-HEF  105 (471)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCEECCCCSEEETHHHHH----------------TCCCTTGGG---GSEEE-EETT-EEE
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEECCeeeehHHhhh----------------ccCcccccc---ceEEE-ecCC-cEE
Confidence            34444666777666663 78999999999999444422                222223333   45665 1111 122


Q ss_pred             EeeCCCC-----------Ccchh---hhh-hhhcccccccccccC--cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHH
Q psy11602        275 VLTSPHD-----------DESWK---MLD-EMIQNSEEFYADLDT--RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMI  337 (1083)
Q Consensus       275 ~~~~~~~-----------~~s~~---~~~-~~~~~~~~~~~~~~t--rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~  337 (1083)
                       ...|..           -.||+   +|| ++++...+||+.+..  +||+|+|||++++...|+.+  +++.+.+.+|+
T Consensus       106 -~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~--~~~~de~~e~i  182 (471)
T 3a32_A          106 -AVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPG--GRVIDVVYDVF  182 (471)
T ss_dssp             -EECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEG--GGHHHHHHHHH
T ss_pred             -EEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcCh--HHHHHHHHHHH
Confidence             233321           13566   788 999999999998777  99999999999999999987  57888999999


Q ss_pred             HHHHHHHHH-hCC-----cEEEEeccCC-----C-c-chhhh--------------------------------ceeeEE
Q psy11602        338 QNSEEFYAD-LGI-----AYRVVNIVSG-----A-L-NHAAA--------------------------------KKLDLE  372 (1083)
Q Consensus       338 ~~~e~~~~~-L~l-----pyRvv~~~~~-----d-l-~~~a~--------------------------------~~~DiE  372 (1083)
                      ..+.++|+. |||     +|+++.-...     + + |..+.                                ..-.++
T Consensus       183 ~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~  262 (471)
T 3a32_A          183 EEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLD  262 (471)
T ss_dssp             HHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEE
T ss_pred             HHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccc
Confidence            999999999 999     5987643332     1 1 11100                                000234


Q ss_pred             Eee-C---CCCcEEeeecccCcccc-cccccceEEec--ccCCCCceeeEEeecccccchhHHHHHHHhhccCCCceecC
Q psy11602        373 AWF-P---GSGAFRELVSCSNCLAY-QSRRLLVRYGQ--TKKMNEKIEFVHMLNATACATTRVICAILETHQTETGVRIP  445 (1083)
Q Consensus       373 ~w~-P---~~~~y~Ev~S~sn~~d~-qarrl~iry~~--~~~~~~~~~~~htln~t~~a~~R~i~ailEn~q~~~Gi~iP  445 (1083)
                      ..+ .   +.++..+++.  ...|+ .+|+++++|-+  ..+.. ..-++|  .+.+=.+.|+|+++||+|.   | .+|
T Consensus       263 ~~l~d~~~~l~~~~~~g~--~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~--~~i~GgieRli~~lie~~~---g-~~p  333 (471)
T 3a32_A          263 FIMMVEESGVSKEWQMGT--IQFDFNLPRRFRLYDVVREEFGIE-EVYIIH--RALLGSIERFLGVYLEHRR---G-RMP  333 (471)
T ss_dssp             EEEEEESSSCEEEEEEEE--EEEESSHHHHTTHHHHHHHHHCCS-CEEEEE--EEEEEEHHHHHHHHHHHTT---T-CCC
T ss_pred             eEEeccHHhhhhhheeee--EEecccccccCCceEeccccCCce-eeEEEe--ccccCcHHHHHHHHHHHhC---C-CCC
Confidence            433 2   3345555442  22343 37889988987  32211 111333  1121278999999999875   4 789


Q ss_pred             cccccc
Q psy11602        446 DCLRKF  451 (1083)
Q Consensus       446 ~~L~py  451 (1083)
                      ..++|+
T Consensus       334 ~~~ap~  339 (471)
T 3a32_A          334 FTLAPI  339 (471)
T ss_dssp             GGGCSC
T ss_pred             CCcCCc
Confidence            888886

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=98.84  E-value=1.1e-09  Score=96.24  Aligned_cols=50  Identities=32%  Similarity=0.735  Sum_probs=44.6

Q ss_pred             ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCC-CcCC
Q psy11602       1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK-TKLM 1081 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~-~~~~ 1081 (1083)
                      .|.+..+ .|.+|++.++...||+||.|+.+||++||+|||+++|++ .|.+
T Consensus        13 ~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C   63 (70)
T 3asl_A           13 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC   63 (70)
T ss_dssp             TSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCC
T ss_pred             CeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCC
Confidence            4455777 899999999999999999999999999999999999999 7543

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.84  E-value=8e-10  Score=91.01  Aligned_cols=43  Identities=28%  Similarity=0.723  Sum_probs=40.1

Q ss_pred             ccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .|.+|++.++.+.||.||.|+.+||++||+|||+.+|++.|.+
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C   44 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQC   44 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEEC
Confidence            4999999999999999999999999999999999999998554

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.5e-09  Score=97.05  Aligned_cols=50  Identities=30%  Similarity=0.709  Sum_probs=44.4

Q ss_pred             ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCC-CcCC
Q psy11602       1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK-TKLM 1081 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~-~~~~ 1081 (1083)
                      .|.+..+ .|.+|++.++...||+||.|+.+||++||+|||+.+|++ .|.+
T Consensus        21 ~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C   71 (77)
T 2e6s_A           21 EKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYC   71 (77)
T ss_dssp             SSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCC
T ss_pred             CeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCC
Confidence            4455667 899999999999999999999999999999999999999 7544

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=98.83  E-value=1.5e-09  Score=96.98  Aligned_cols=50  Identities=32%  Similarity=0.736  Sum_probs=46.1

Q ss_pred             ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCC-cCC
Q psy11602       1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKT-KLM 1081 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~-~~~ 1081 (1083)
                      .|.+..+ .|.+|++.++++.||+||.|+++||++||+|||+.+|++. |.+
T Consensus        21 ~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C   71 (77)
T 3shb_A           21 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC   71 (77)
T ss_dssp             TSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCC
T ss_pred             CCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceEC
Confidence            4566888 8999999999999999999999999999999999999998 665

>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A

Probab=98.81  E-value=7.1e-09  Score=120.63  Aligned_cols=95  Identities=19%  Similarity=0.154  Sum_probs=82.6

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|....+++-++..+..++++||+|+|+++++||+|. ++    .|  |.|||.+.+.+.|+.+. +.+
T Consensus        68 ~~D~~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~-p~----~g--R~REf~Q~g~e~~g~~~-~~a  139 (421)
T 1h4v_B           68 FQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAER-PQ----KG--RYRQFHQVNYEALGSEN-PIL  139 (421)
T ss_pred             EECCCCCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCC-CC----CC--CcccEEEccEEEECCCC-hhh
Confidence            569999999999999999999999888899999999999999999994 32    34  99999999999999887 445


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc-eEEEE
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA-YRVVN  118 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp-yrvv~  118 (1083)
                      +   .+++.++.++|++|||+ |+++.
T Consensus       140 d---~e~i~~~~~~l~~lgl~~~~i~i  163 (421)
T 1h4v_B          140 D---AEAVVLLYECLKELGLRRLKVKL  163 (421)
T ss_pred             h---HHHHHHHHHHHHHcCCCceEEEE
Confidence            4   47889999999999998 66553

>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1

Probab=98.79  E-value=6.3e-09  Score=121.69  Aligned_cols=102  Identities=15%  Similarity=0.181  Sum_probs=86.8

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|+...+++-++..+ .++ +||+|+|+++++||+|. ++    .|  |.|||.+.+.+.|+.+. ..+
T Consensus        68 ~~D~~g~~l~LrPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~er-p~----~g--R~REF~Q~d~ei~g~~~-~~a  137 (434)
T 1wu7_A           68 FVDKGGREVTLIPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYEE-PQ----AG--RYREHYQFNADIFGSDS-PEA  137 (434)
T ss_dssp             EECTTSCEEEECSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCCC-SC----SS--CCSEEEEEEEEEESCCS-HHH
T ss_pred             EECCCCCEEEeCCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCCC-CC----CC--CccceEEeeEEEEcCCC-hHh
Confidence            56999999999999999999999887 666 89999999999999994 32    34  99999999999999887 444


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc--eEEEEeccCCCCcc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA--YRVVNIVSGALNHA  127 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp--yrvv~~~sgdlg~~  127 (1083)
                      +.   +++.++.++|++|||+  |+++....|.+++.
T Consensus       138 d~---E~i~~~~~~l~~lgl~~~~~i~l~~~g~~~~~  171 (434)
T 1wu7_A          138 DA---EVIALASSILDRLGLQDIYEIRINSRKIMEEI  171 (434)
T ss_dssp             HH---HHHHHHHHHHHHTTTTTSEEEEEEEHHHHHHH
T ss_pred             hH---HHHHHHHHHHHHcCCCCceEEEECChhhHHHH
Confidence            33   6789999999999998  88887777665544

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=98.78  E-value=2.1e-09  Score=94.64  Aligned_cols=55  Identities=33%  Similarity=0.832  Sum_probs=48.1

Q ss_pred             CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ..++..|.||..+++++.+.||.||+|..+||+.|||+..+          |++.|+|..|....
T Consensus        13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~v----------P~g~W~C~~C~~~~   67 (71)
T 2ku3_A           13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI----------PEGQWLCRHCLQSR   67 (71)
T ss_dssp             CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSC----------CSSCCCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcC----------CCCCcCCccCcCcC
Confidence            35677999999888778999999999999999999999765          78999999997643

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=3e-09  Score=98.32  Aligned_cols=49  Identities=29%  Similarity=0.554  Sum_probs=44.3

Q ss_pred             ccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1033 WGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1033 ~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .......|.+|++.+++..||+||.|+.+||++||+|||+.+|++.|.|
T Consensus        12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C   60 (92)
T 2e6r_A           12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRC   60 (92)
T ss_dssp             CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCC
T ss_pred             hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCC
Confidence            3467778999999999999999999999999999999999999998544

>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*

Probab=98.73  E-value=2.4e-08  Score=116.30  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|....+++-++..+ .++++||+|+|+++++||+|. ++    .|  |.|||.+.+.+.|+.+. ..+
T Consensus        69 ~~D~~g~~l~Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~-p~----~g--R~Ref~Q~d~e~~g~~~-~~a  139 (423)
T 1htt_A           69 FEDRNGDSLTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHER-PQ----KG--RYRQFHQLGCEVFGLQG-PDI  139 (423)
T ss_dssp             EECTTSCEEEECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCCC-CC----SS--CCSEEEEEEEEEESCCS-HHH
T ss_pred             EEcCCCCEEEeCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCCC-CC----CC--ccceeEEeeEEEECCCC-chh
Confidence            56899999999999999999999865 568899999999999999994 32    34  99999999999999887 445


Q ss_pred             HHHHHHHHHHHHHHHHHcCC--ceEEEEec
Q psy11602         93 WKMLDEMIQNSEEFYADLGI--AYRVVNIV  120 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgL--pyrvv~~~  120 (1083)
                      +.   +++.++.++|++|||  .|+++...
T Consensus       140 d~---e~i~~~~~~l~~lgl~~~~~i~i~~  166 (423)
T 1htt_A          140 DA---ELIMLTARWWRALGISEHVTLELNS  166 (423)
T ss_dssp             HH---HHHHHHHHHHHHHTCGGGCEEEEEE
T ss_pred             hH---HHHHHHHHHHHHCCCCCCcEEEEcC
Confidence            33   678999999999999  58876544

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.67  E-value=9.6e-09  Score=98.73  Aligned_cols=51  Identities=27%  Similarity=0.572  Sum_probs=46.9

Q ss_pred             ccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1031 QAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .|.+..+..|.+|++.++...||+||.|+.+||++||+|||+.+|++.|++
T Consensus        52 ~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C  102 (114)
T 2kwj_A           52 KWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSC  102 (114)
T ss_dssp             TCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCC
T ss_pred             ccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeEC
Confidence            466789999999999999999999999999999999999999999998543

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=5.6e-09  Score=95.74  Aligned_cols=55  Identities=33%  Similarity=0.832  Sum_probs=48.3

Q ss_pred             CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .+++..|.||..+.+.+.+.||.||.|..+||+.||++..+          |++.|+|..|....
T Consensus        22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~v----------P~g~W~C~~C~~~~   76 (88)
T 2l43_A           22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI----------PEGQWLCRHCLQSR   76 (88)
T ss_dssp             CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSC----------CSSCCCCHHHHHHT
T ss_pred             CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCcc----------CCCceECccccCcc
Confidence            46778999999887778899999999999999999999764          78999999998653

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=8.4e-09  Score=89.49  Aligned_cols=43  Identities=23%  Similarity=0.527  Sum_probs=37.4

Q ss_pred             cccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ....|.+|++.++   ||.||.|+.+||++||+|||+.+|++.|++
T Consensus        11 ~~~~C~vC~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C   53 (66)
T 2lri_C           11 PGARCGVCGDGTD---VLRCTHCAAAFHWRCHFPAGTSRPGTGLRC   53 (66)
T ss_dssp             TTCCCTTTSCCTT---CEECSSSCCEECHHHHCTTTCCCCSSSCCC
T ss_pred             CCCCcCCCCCCCe---EEECCCCCCceecccCCCccCcCCCCCEEC
Confidence            3456999987654   999999999999999999999999999654

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.61  E-value=2e-08  Score=95.95  Aligned_cols=52  Identities=27%  Similarity=0.429  Sum_probs=47.4

Q ss_pred             cccccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1030 KQAWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1030 ~~~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ..|.+..+..|.+|++.+++..||+||.|+++||++||+|||+.+|++.|++
T Consensus        47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C   98 (111)
T 2ysm_A           47 AGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKC   98 (111)
T ss_dssp             TTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCC
T ss_pred             cCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCC
Confidence            4566799999999999999999999999999999999999999999998543

>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A

Probab=98.58  E-value=7.5e-08  Score=106.84  Aligned_cols=145  Identities=16%  Similarity=0.140  Sum_probs=105.5

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      ..+++++|+||....++.+++..+.+ +++|+|+|+++++||+|..       |..|.+||.+++.+.++.+..    ..
T Consensus       120 pl~e~~~LRp~l~p~l~~~~r~~~~~-~~~PlrlfeiG~vFR~E~~-------~~~r~~EF~qle~~i~g~~~~----~~  187 (288)
T 3dsq_A          120 WLDGKKCLRPMLAPNLYTLWRELERL-WDKPIRIFEIGTCYRKESQ-------GAQHLNEFTMLNLTELGTPLE----ER  187 (288)
T ss_dssp             EEETTEEECSCSHHHHHHHHHHHTTT-SCSCEEEEEEEEEECSCCS-------SSCCCSEEEEEEEEEETCCGG----GH
T ss_pred             ccccchhhhhcChHHHHHHHHHHHhC-CCCCEEEEEEeeEEecCCC-------CCCcCccEEEEEEEEEcCCch----hh
Confidence            34467999999999888877776555 8999999999999999984       344789999999999987642    35


Q ss_pred             HHHHHHHHHHHHHHcCC-ceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhh-hcccceeccCCCccc
Q psy11602         96 LDEMIQNSEEFYADLGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQS-RRLLVRYGQTKQKIY  173 (1083)
Q Consensus        96 ~~~~~~~y~~if~~LgL-pyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs-~rl~i~y~~~~~~~n  173 (1083)
                      |.++..+++.||++||| +|+.++. +.+..+   +.+|+  +.    ++.||+.+. .--... +.++|.   .  .+.
T Consensus       188 f~elkg~le~ll~~LGl~~~~~~~~-s~e~~~---~~~~l--~~----~~~eig~~G-v~p~vl~~~~gi~---~--~~~  251 (288)
T 3dsq_A          188 HQRLEDMARWVLEAAGIREFELVTE-SSVVYG---DTVDV--MK----GDLELASGA-MGPHFLDEKWEIF---D--PWV  251 (288)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCEEEEC-CCCSSC---CCEEE--EE----TTEEEEEEE-EESCTTTTTTTCC---S--CEE
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEecC-CcceEE---EEEEE--Ee----CCEEEEEEE-ecHHHHHHhcCCC---C--CeE
Confidence            89999999999999999 6887664 334332   33444  22    358888876 332223 344441   1  256


Q ss_pred             cccccchhheeheec
Q psy11602        174 ATACATTRVICAILE  188 (1083)
Q Consensus       174 ~tg~a~~Rli~Alle  188 (1083)
                      +.|+++.|++..+..
T Consensus       252 gfglglerl~m~~~g  266 (288)
T 3dsq_A          252 GLGFGLERLLMIREG  266 (288)
T ss_dssp             EEEEEHHHHHHHHHT
T ss_pred             EEEECHHHHHHHHcC
Confidence            678898998876544

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3e-08  Score=83.25  Aligned_cols=44  Identities=41%  Similarity=0.819  Sum_probs=38.1

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .....|.+|++.+   .||.||.|+.+||++||+|||+.+|++.|++
T Consensus         7 ~~~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C   50 (56)
T 2yql_A            7 GHEDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWIC   50 (56)
T ss_dssp             SSCCSCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCC
T ss_pred             CCCCCCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEC
Confidence            3456799999865   5999999999999999999999999998543

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.54  E-value=2.7e-08  Score=105.42  Aligned_cols=49  Identities=33%  Similarity=0.746  Sum_probs=39.6

Q ss_pred             cccccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCC-CcCC
Q psy11602       1032 AWGVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKK-TKLM 1081 (1083)
Q Consensus      1032 ~~~~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~-~~~~ 1081 (1083)
                      |.+..+ .|.+|++.++.+.||+||.|+.+||++||+|||+.+|++ .|.|
T Consensus       170 w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~C  219 (226)
T 3ask_A          170 RLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC  219 (226)
T ss_dssp             SCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCC
T ss_pred             EecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCC
Confidence            344556 799999999999999999999999999999999999999 7654

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=98.54  E-value=4.1e-08  Score=83.92  Aligned_cols=43  Identities=35%  Similarity=0.753  Sum_probs=37.6

Q ss_pred             cccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ....|.+|++.+   .||.||.|+.+||++||+|||+.+|++.|.+
T Consensus         8 ~~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C   50 (61)
T 1mm2_A            8 HMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLC   50 (61)
T ss_dssp             SCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCC
T ss_pred             CCCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCC
Confidence            456699998754   5999999999999999999999999998654

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.54  E-value=4e-08  Score=89.59  Aligned_cols=44  Identities=25%  Similarity=0.622  Sum_probs=39.5

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .....|.+|++.++   ||.||.|+.+||++||+|||+.+|++.|.|
T Consensus        23 ~n~~~C~vC~~~g~---LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C   66 (88)
T 1fp0_A           23 DSATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSC   66 (88)
T ss_dssp             SSSSCCSSSCSSSC---CEECTTSSCEECTTSSSTTCCCCCSSSCCC
T ss_pred             CCCCcCcCcCCCCC---EEECCCCCCceecccCCCCCCCCcCCCcCC
Confidence            56678999998764   999999999999999999999999999655

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=98.53  E-value=3.7e-08  Score=85.47  Aligned_cols=43  Identities=35%  Similarity=0.743  Sum_probs=37.6

Q ss_pred             cccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ....|.+|++.+   .||.||.|+.+||++||+|||+.+|++.|.+
T Consensus         7 ~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C   49 (66)
T 1xwh_A            7 NEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRC   49 (66)
T ss_dssp             CCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCC
T ss_pred             CCCCCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeEC
Confidence            456799999865   5999999999999999999999999998543

>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}

Probab=98.52  E-value=1.5e-07  Score=111.12  Aligned_cols=89  Identities=17%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             CCCCC-CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         13 PEKDE-LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr~-~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      +.|+. ++.++|+|+...+++-++....+++ +||+|+|+++++||+|....       .|.|||++.+...|..+. ..
T Consensus        97 ~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~-------gR~ReF~Q~d~ei~g~~~-~~  167 (467)
T 4e51_A           97 FVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQR-------GRYRQFHQVGVEALGFAG-PD  167 (467)
T ss_dssp             EECTTTCCEEEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC----------CCSEEEEEEEEEETCCC-SH
T ss_pred             EecCCCCCEEEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccCCCCC-------CCcCceEEEEEEEEeCCC-hH
Confidence            45888 9999999999999999999988898 69999999999999997433       389999999999998887 34


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCc
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      ++   .+++..+.++|+.|||+
T Consensus       168 ad---aEvi~l~~~~l~~lGl~  186 (467)
T 4e51_A          168 AD---AEIVMMCQRLWEDLGLT  186 (467)
T ss_dssp             HH---HHHHHHHHHHHHHHTCC
T ss_pred             HH---HHHHHHHHHHHHHcCCC
Confidence            44   68999999999999995

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.51  E-value=4.6e-08  Score=93.71  Aligned_cols=51  Identities=31%  Similarity=0.671  Sum_probs=45.7

Q ss_pred             ccccccccccccccCC-CCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1031 QAWGVLSHKCGLCHLS-HDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1031 ~~~~~~~~~c~~C~~~-~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .|.+..++.|.+|++. .+++.||.||.|+++||++||+|||+.+|++.|.+
T Consensus        55 ~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C  106 (112)
T 3v43_A           55 RWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWIC  106 (112)
T ss_dssp             CCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCC
T ss_pred             ccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeEC
Confidence            5778999999999986 45678999999999999999999999999999654

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=98.51  E-value=3.5e-08  Score=85.53  Aligned_cols=59  Identities=34%  Similarity=0.632  Sum_probs=47.3

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .++..|.||...++++.+.||+||.|+.+||+.||++.....     ...|.+.|+|..|....
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~-----~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSS-----VIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHH-----HHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccccc-----ccCCCCCEECCCCcCcc
Confidence            567799999988777789999999999999999999864310     00167899999998654

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=98.51  E-value=4.4e-08  Score=83.41  Aligned_cols=42  Identities=43%  Similarity=0.899  Sum_probs=36.9

Q ss_pred             ccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1037 SHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1037 ~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ...|.+|++.+   .||.||.|+.+||++||+|||+.+|++.|.+
T Consensus         5 ~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C   46 (60)
T 2puy_A            5 EDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWIC   46 (60)
T ss_dssp             CSSCTTTCCCS---SCEECSSSSCEECGGGSSSCCSSCCCSCCCC
T ss_pred             CCCCcCCCCCC---cEEEcCCCCcCEECCcCCCCcCCCCCCceEC
Confidence            45699999865   5999999999999999999999999998543

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.47  E-value=5.1e-08  Score=89.38  Aligned_cols=46  Identities=22%  Similarity=0.564  Sum_probs=40.0

Q ss_pred             cccccccccCCCC--CCcceecCccCCCccccCCCCCCCC----CCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHD--PHTMAKCDTCHLYYHLACLDPPLLR----MPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~--~~~~~~Cd~C~~~yH~~Cl~Ppl~~----~P~~~~~~ 1081 (1083)
                      ....|.+|++.++  ...||+||.|+.+||++||+|||++    +|++.|+|
T Consensus        15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C   66 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYC   66 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCC
T ss_pred             CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeC
Confidence            4567999998865  4789999999999999999999995    99999554

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.46  E-value=6.2e-08  Score=88.84  Aligned_cols=58  Identities=28%  Similarity=0.550  Sum_probs=46.1

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+..|.||...++.+.|.||+||.|..+||+.||++.....    ....|.+.|+|..|...
T Consensus        15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~----~~~~p~g~W~C~~C~~~   72 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDK----EVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHH----HHHCTTCCCCCHHHHHH
T ss_pred             CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccccc----ccCCCCCCeeCccccch
Confidence            35599999988777789999999999999999999875410    00127899999999764

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=98.45  E-value=4.9e-08  Score=83.41  Aligned_cols=44  Identities=30%  Similarity=0.664  Sum_probs=38.4

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .....|.+|++.+   .||.||.|+.+||++||+|||+++|++.|.+
T Consensus         9 ~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C   52 (61)
T 2l5u_A            9 DHQDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSC   52 (61)
T ss_dssp             CCCSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCC
T ss_pred             CCCCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceEC
Confidence            4566799999854   6999999999999999999999999998554

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=98.37  E-value=1e-07  Score=82.49  Aligned_cols=46  Identities=28%  Similarity=0.596  Sum_probs=39.2

Q ss_pred             cccccccccCC--CCCCcceecCccCCCccccCCCCCCCC--C-CCCCcCC
Q psy11602       1036 LSHKCGLCHLS--HDPHTMAKCDTCHLYYHLACLDPPLLR--M-PKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~--~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~--~-P~~~~~~ 1081 (1083)
                      ....|.+|+..  .+...||+||.|+.+||++||.|||++  + |++.|++
T Consensus         5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C   55 (66)
T 2yt5_A            5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLC   55 (66)
T ss_dssp             CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEEC
Confidence            45679999987  456899999999999999999999998  4 8888543

>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*

Probab=98.29  E-value=1.2e-06  Score=99.68  Aligned_cols=91  Identities=19%  Similarity=0.152  Sum_probs=73.1

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|-.-.+++-++...   ++++|+|+|+++++||+|...     .|  |.|||.+++...|..+. ..+
T Consensus        87 ~~D~~g~~l~LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~-----~g--R~REF~Q~g~ei~g~~~-~~a  155 (344)
T 1z7m_A           87 FIKHEGQSITLRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKEKRH-----KG--RSTENYQIGIELFGESA-DKS  155 (344)
T ss_dssp             EECTTCCEEEECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCCC--------------CCEEEEEEEESSCH-HHH
T ss_pred             EECCCCCEEecCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccCCCC-----CC--CcceeEEEEEEEEcCCC-cHH
Confidence            46899999999999999999988865   788999999999999999532     23  99999999999999876 444


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc-eEEE
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA-YRVV  117 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp-yrvv  117 (1083)
                      +   .+++..+.++|++|||+ |++.
T Consensus       156 D---aEvi~l~~~~l~~lgl~~~~i~  178 (344)
T 1z7m_A          156 E---LEILSLALQVIEQLGLNKTVFE  178 (344)
T ss_dssp             H---HHHHHHHHHHHHHHTCSSEEEE
T ss_pred             H---HHHHHHHHHHHHHCCCCcEEEE
Confidence            4   47899999999999997 5544

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=98.20  E-value=4.4e-07  Score=79.82  Aligned_cols=45  Identities=24%  Similarity=0.566  Sum_probs=39.4

Q ss_pred             ccccccccccCCC--CCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1035 VLSHKCGLCHLSH--DPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~--~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .....|.+|++.+  +++.||+||.|+.+||++||.||+  +|++.|++
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C   60 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLC   60 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCC
Confidence            4567799999876  788999999999999999999995  99998554

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.16  E-value=5.8e-07  Score=79.82  Aligned_cols=47  Identities=21%  Similarity=0.391  Sum_probs=41.4

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .....|.+|++.++...|+.||.|+.|||+.||.||+..+|.+.|.+
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C   62 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFC   62 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCC
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEC
Confidence            45667999999998889999999999999999999999999877443

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=98.15  E-value=9.7e-07  Score=72.50  Aligned_cols=49  Identities=22%  Similarity=0.615  Sum_probs=40.1

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .|.||...  ++.+.||.||.|...+|..|+.+....        .|.+.|+|..|...
T Consensus         2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~--------~P~g~W~C~~C~~~   50 (51)
T 1f62_A            2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYE--------VPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCS--------CCSSCCSCTTTSCC
T ss_pred             CCCCCCCC--CCCCCEEECCCCChhhCcccCCCCcCC--------CCCCcEECcCcccc
Confidence            69999954  357899999999999999999765432        27789999999764

>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A

Probab=98.10  E-value=5.7e-06  Score=101.84  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=83.0

Q ss_pred             hhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchh----------------------------------
Q psy11602        285 WKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDE----------------------------------  328 (1083)
Q Consensus       285 ~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~----------------------------------  328 (1083)
                      +++|| ++++...+||+. +--.||+|++||+..|.-+|+.|+...                                  
T Consensus       262 ~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea  341 (693)
T 2zt5_A          262 QGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDA  341 (693)
T ss_dssp             TTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHH
T ss_pred             CcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhccccccccchhhhh
Confidence            57888 999999999998 656799999999999999999887531                                  


Q ss_pred             ------HHHHHHHHHHHHHHHHHHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeeccc
Q psy11602        329 ------SWKTLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS  388 (1083)
Q Consensus       329 ------s~~~~e~~~~~~e~~~~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~s  388 (1083)
                            ..+++..++..+.+||..|||+   +|+......++..-|...+|+|+.+|-  .|.|+.-|.
T Consensus       342 ~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~--g~~e~~~~a  408 (693)
T 2zt5_A          342 VEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSY--GWIEIVGCA  408 (693)
T ss_dssp             HHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETT--EEEEEEEEE
T ss_pred             hhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccC--ChHHHHHHH
Confidence                  0256778999999999999997   677666567888888899999999863  377765544

>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=98.09  E-value=7.9e-06  Score=93.81  Aligned_cols=100  Identities=12%  Similarity=0.031  Sum_probs=74.8

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      .+.|+.++.++|+|..-.+++-++..... .+++|+|+|+++++||+|..+.+ ...+.-|.|||++.+...|..++...
T Consensus        84 ~~~D~~g~~l~LRpd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e~~g~~-~~~~~gR~ReF~Q~g~ei~g~~d~~~  161 (373)
T 3rac_A           84 RLFDGGGDAVALRPEMTPSIARMAAPRVA-AGRTPIRWCYCERVYRRTDDPAS-LSWASGKAAESTQVGIERIGEEASVD  161 (373)
T ss_dssp             BCCCCSSSCEEECSSSHHHHHHHHHHHHH-TTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSCCCHH
T ss_pred             EEECCCCCEEEECCcCHHHHHHHHHhccc-cCCCCeEEEEEcceEccCCCccc-ccccCCccceeEEeeeEEECCCCCHH
Confidence            35699999999999999999998876543 48899999999999999974100 00023399999999999999883244


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCc-eEE
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIA-YRV  116 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLp-yrv  116 (1083)
                      ++   .+++....++|+.|||+ |++
T Consensus       162 aD---aEvi~l~~~~l~~lgl~~~~i  184 (373)
T 3rac_A          162 VD---MDVLRLLHEASAAAGVRHHRI  184 (373)
T ss_dssp             HH---HHHHHHHHHHHHHHTCCSCEE
T ss_pred             HH---HHHHHHHHHHHHHcCCCceEE
Confidence            54   47999999999999994 543

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=1.1e-06  Score=81.24  Aligned_cols=57  Identities=21%  Similarity=0.473  Sum_probs=45.1

Q ss_pred             cceecccccCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        678 FWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       678 ~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .|.+.++.       .|.||...  .+.+.||.||.|...+|..|++++....        |.+.|+|..|...
T Consensus        10 ~~~~~~~~-------~C~vC~~~--~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~--------P~g~W~C~~C~~~   66 (92)
T 2e6r_A           10 SAQFIDSY-------ICQVCSRG--DEDDKLLFCDGCDDNYHIFCLLPPLPEI--------PRGIWRCPKCILA   66 (92)
T ss_dssp             CCCCCCCC-------CCSSSCCS--GGGGGCEECTTTCCEECSSSSSSCCSSC--------CSSCCCCHHHHHH
T ss_pred             hhhccCCC-------CCccCCCc--CCCCCEEEcCCCCchhccccCCCCcccC--------CCCCcCCccCcCc
Confidence            55554444       99999955  3468999999999999999999765422        7899999999764

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=98.04  E-value=6.1e-06  Score=78.13  Aligned_cols=61  Identities=28%  Similarity=0.550  Sum_probs=49.9

Q ss_pred             CCCCCccccccCCCCCCCCCcEEEcc--cCCcccccccccccccCCCcccCCCCCCCCcccccccCCC----CCCceeec
Q psy11602        687 KFSKILVCCVCLGERSDDVNEIVECD--SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI----AEPTCELC  760 (1083)
Q Consensus       687 ~~~~~~~C~VC~~~~~~~~n~iv~Cd--~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~----~~~~C~LC  760 (1083)
                      +..++..|.||..     ..+||.||  .|...+|..|+++..+          |.+.|+|..|.-..    ..+.|.+|
T Consensus        11 ~~~~~~~C~~C~~-----~G~ll~CD~~~Cp~~fH~~Cl~L~~~----------P~g~W~Cp~c~C~~C~k~~~~~C~~C   75 (107)
T 4gne_A           11 KQMHEDYCFQCGD-----GGELVMCDKKDCPKAYHLLCLNLTQP----------PYGKWECPWHQCDECSSAAVSFCEFC   75 (107)
T ss_dssp             CCSSCSSCTTTCC-----CSEEEECCSTTCCCEECTGGGTCSSC----------CSSCCCCGGGBCTTTCSBCCEECSSS
T ss_pred             cCCCCCCCCcCCC-----CCcEeEECCCCCCcccccccCcCCcC----------CCCCEECCCCCCCcCCCCCCcCcCCC
Confidence            4567779999983     45899999  7999999999996554          78999999887432    45899999


Q ss_pred             CC
Q psy11602        761 PN  762 (1083)
Q Consensus       761 p~  762 (1083)
                      |.
T Consensus        76 p~   77 (107)
T 4gne_A           76 PH   77 (107)
T ss_dssp             SC
T ss_pred             Cc
Confidence            98

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=1.2e-06  Score=80.23  Aligned_cols=44  Identities=25%  Similarity=0.601  Sum_probs=38.8

Q ss_pred             cccccccccCCC--CCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSH--DPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~--~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ....|.+|++.+  +...||.||.|+.+||++|+.||+  +|++.|+|
T Consensus        24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C   69 (88)
T 2l43_A           24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLC   69 (88)
T ss_dssp             CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCC
T ss_pred             CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceEC
Confidence            457799999876  778999999999999999999996  99998654

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=98.02  E-value=1.2e-06  Score=80.15  Aligned_cols=41  Identities=24%  Similarity=0.579  Sum_probs=35.2

Q ss_pred             ecCccCCcCCCccccCCCCCCCCceeEEeCCCCCCccceeceeec
Q psy11602        841 FEMPYSRWGAKSCALCPDESYARTELALQSPPVNCVPTLLVYMEV  885 (1083)
Q Consensus       841 ~~ip~~r~~~~~C~iC~~~~~~~~GaciqC~~~~C~~~fH~~~~~  885 (1083)
                      .+||++||.+ +|+||+++   ..||||||+..+|.+.||+.++.
T Consensus         9 ~NIp~~R~~l-~C~iC~~~---~~GAciqC~~~~C~~~fHv~CA~   49 (87)
T 2lq6_A            9 MNIPPARWKL-TCYLCKQK---GVGASIQCHKANCYTAFHVTCAQ   49 (87)
T ss_dssp             CCCCCCCCCC-CBTTTTBC---CSSCEEECSCTTTCCEEEHHHHH
T ss_pred             cCCChHHhcC-CCcCCCCC---CCcEeEecCCCCCCCcCcHHHHH
Confidence            4799999985 89999874   36999999999999999995543

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=3.1e-06  Score=73.38  Aligned_cols=52  Identities=21%  Similarity=0.471  Sum_probs=42.0

Q ss_pred             CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ......|.||..     .+.||.||.|...||.+|+.+.....        |.+.|+|..|....
T Consensus         9 ~~~~~~C~vC~~-----~~~ll~Cd~C~~~~H~~Cl~P~l~~~--------P~g~W~C~~C~~~~   60 (66)
T 2lri_C            9 LAPGARCGVCGD-----GTDVLRCTHCAAAFHWRCHFPAGTSR--------PGTGLRCRSCSGDV   60 (66)
T ss_dssp             CCTTCCCTTTSC-----CTTCEECSSSCCEECHHHHCTTTCCC--------CSSSCCCTTTTTCC
T ss_pred             CCCCCCcCCCCC-----CCeEEECCCCCCceecccCCCccCcC--------CCCCEECccccCCC
Confidence            445668999973     35699999999999999998765432        78999999998754

>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}

Probab=97.96  E-value=1.8e-05  Score=91.72  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|+.++.++|+|-.-.+++-++... ..++++|+|+|+++++||+|...       .-|.|||.+.+...|..+. ..+
T Consensus        71 f~D~~g~~l~LRpd~T~~~aR~~~~~-~~~~~~P~r~~y~g~vfR~e~~~-------~gR~Ref~Q~g~ei~G~~~-~~a  141 (400)
T 3od1_A           71 LLDQQGNTLVLRPDMTAPIARLVASS-LKDRAYPLRLAYQSNVYRAQQNE-------GGKPAEFEQLGVELIGDGT-ASA  141 (400)
T ss_dssp             EECTTSCEEEECSCSHHHHHHHHHHH-CSSSCSCEEEEEEEEEECCCC----------CCCSEEEEEEEEEESCCS-HHH
T ss_pred             EECCCCCEEEECCCCHHHHHHHHHhh-cccCCCCeEEEEEcCEEeCCCCC-------CCCCCccEEeEEEEECCCC-hHh
Confidence            45899999999999999999988764 45789999999999999999632       2399999999999999877 445


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      +   .+++....++|+.|||+
T Consensus       142 D---aEvi~l~~~~l~~lgl~  159 (400)
T 3od1_A          142 D---GEVIALMIAALKRAGLS  159 (400)
T ss_dssp             H---HHHHHHHHHHHHHTTCC
T ss_pred             H---HHHHHHHHHHHHHCCCC
Confidence            4   47999999999999984

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=9.6e-06  Score=72.43  Aligned_cols=49  Identities=33%  Similarity=0.748  Sum_probs=40.6

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCC-CcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTE-PWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~-~W~Cd~C~~~  751 (1083)
                      .|.||...  ++.+.||.||.|..++|..|++++....        |.+ .|+|..|..+
T Consensus        28 ~C~vC~~~--~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~--------P~g~~W~C~~C~~d   77 (77)
T 2e6s_A           28 SCRVCGGK--HEPNMQLLCDECNVAYHIYCLNPPLDKV--------PEEEYWYCPSCKTD   77 (77)
T ss_dssp             SCSSSCCC--CCSTTEEECSSSCCEEETTSSSSCCSSC--------CCSSCCCCTTTCCC
T ss_pred             CCcCcCCc--CCCCCEEEcCCCCccccccccCCCccCC--------CCCCCcCCcCccCc
Confidence            79999954  4578999999999999999999765422        677 9999999753

>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A

Probab=97.92  E-value=2.4e-05  Score=92.15  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|+.++.++|+|-.-.+++-++.... .+.+||+|+|+++++||+|....|       |.|||.+.+...|..+. ..+
T Consensus        91 f~D~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~g-------R~ReF~Q~g~ei~G~~~-~~~  161 (456)
T 3lc0_A           91 FITKGGHRVALRPEMTPSLARLLLGKG-RSLLLPAKWYSIPQCWRYEAITRG-------RRREHYQWNMDIVGVKS-VSA  161 (456)
T ss_dssp             EECSSSCEEEECSCSHHHHHHHHHHSC-TTCCSSEEEEECCEEECCCC------------CCEEEEEEEEEESCCS-THH
T ss_pred             EEcCCCCEEecCCcCHHHHHHHHHhcC-cccCCCEEEEEeccEEecCCCCCC-------CccceEEEEEEEEcCCC-hHh
Confidence            468999999999999999999998764 478999999999999999963322       99999999999998877 445


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q psy11602         93 WKMLDEMIQNSEEFYADLGI  112 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgL  112 (1083)
                      +   .+++....++|+.|||
T Consensus       162 D---aEvi~l~~~~l~~lgl  178 (456)
T 3lc0_A          162 E---VELVCAACWAMRSLGL  178 (456)
T ss_dssp             H---HHHHHHHHHHHHHTTC
T ss_pred             h---HHHHHHHHHHHHHcCC
Confidence            5   3799999999999999

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=97.91  E-value=5e-06  Score=72.05  Aligned_cols=52  Identities=25%  Similarity=0.568  Sum_probs=42.3

Q ss_pred             CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ...+..|.||...     +.||.||.|...||..|+++.....        |.+.|+|..|....
T Consensus         5 ~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl~~~--------P~g~W~C~~C~~~~   56 (66)
T 1xwh_A            5 QKNEDECAVCRDG-----GELICCDGCPRAFHLACLSPPLREI--------PSGTWRCSSCLQAT   56 (66)
T ss_dssp             CSCCCSBSSSSCC-----SSCEECSSCCCEECTTTSSSCCSSC--------CSSCCCCHHHHHTC
T ss_pred             CCCCCCCccCCCC-----CCEEEcCCCChhhcccccCCCcCcC--------CCCCeECccccCcc
Confidence            3567799999843     5799999999999999999754322        77999999998654

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=97.89  E-value=6.6e-06  Score=73.44  Aligned_cols=56  Identities=25%  Similarity=0.637  Sum_probs=43.5

Q ss_pred             cceecccccCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCC-cccccccCC
Q psy11602        678 FWFQLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEP-WFCESCRAG  751 (1083)
Q Consensus       678 ~W~~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~-W~Cd~C~~~  751 (1083)
                      .|++..+        .|.||...  ++.++||.||.|..++|.+|+++.....        |.+. |+|..|+++
T Consensus        21 ~W~C~~C--------~C~vC~~~--~d~~~ll~CD~C~~~yH~~Cl~PpL~~~--------P~g~~W~C~~C~~d   77 (77)
T 3shb_A           21 NRLCRVC--------ACHLCGGR--QDPDKQLMCDECDMAFHIYCLDPPLSSV--------PSEDEWYCPECRND   77 (77)
T ss_dssp             TSCCTTT--------SBTTTCCC--SCGGGEEECTTTCCEEETTTSSSCCSSC--------CSSSCCCCTTTC--
T ss_pred             CCCCCCC--------cCCccCCC--CCCcceeEeCCCCCccCcccCCCcccCC--------CCCCceECcCcccc
Confidence            6777443        59999854  4578999999999999999999765422        6777 999999864

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=97.87  E-value=6.9e-06  Score=70.09  Aligned_cols=51  Identities=24%  Similarity=0.618  Sum_probs=41.5

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .++..|.||..     .+.||.||.|..+||..|+++....        .|.+.|+|..|....
T Consensus         7 ~~~~~C~vC~~-----~g~ll~Cd~C~~~fH~~Cl~ppl~~--------~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKD-----GGELLCCDTCPSSYHIHCLNPPLPE--------IPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCC-----CSSCBCCSSSCCCBCSSSSSSCCSS--------CCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCC-----CCCEEEcCCCCHHHcccccCCCcCc--------CCCCccCChhhcCch
Confidence            45678999984     3589999999999999999975432        278999999998653

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=7e-06  Score=68.79  Aligned_cols=49  Identities=22%  Similarity=0.632  Sum_probs=40.4

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      .++..|.||...     +.||.||.|...+|..|+++.....        |.+.|+|..|..
T Consensus         7 ~~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ppl~~~--------p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTI--------PKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS-----SCCEECSSSSCEECSSSSSSCCCSC--------CCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC-----CeEEEcCCCCcceECccCCCCcCCC--------CCCceEChhhhC
Confidence            456799999853     5899999999999999999755422        789999999964

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=97.85  E-value=6.9e-06  Score=76.72  Aligned_cols=44  Identities=30%  Similarity=0.727  Sum_probs=38.2

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
                      .+...| +|+...+...|+.||.|+.|||+.|+.||+..+|. .|.
T Consensus        26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~   69 (98)
T 2lv9_A           26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYL   69 (98)
T ss_dssp             CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBC
T ss_pred             CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEE
Confidence            344557 89999999999999999999999999999999996 443

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=97.84  E-value=9.4e-06  Score=69.25  Aligned_cols=51  Identities=25%  Similarity=0.543  Sum_probs=41.9

Q ss_pred             CCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        688 FSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       688 ~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..++..|.||..     .+.||.||.|...+|..|+++....        .|.+.|+|..|...
T Consensus         8 ~~~~~~C~vC~~-----~g~ll~CD~C~~~fH~~Cl~p~l~~--------~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQ-----GGEIILCDTCPRAYHMVCLDPDMEK--------APEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSC-----CSSEEECSSSSCEEEHHHHCTTCCS--------CCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCC-----CCcEEECCCCChhhhhhccCCCCCC--------CCCCceECcccccc
Confidence            356779999985     3589999999999999999986432        27899999999753

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=97.83  E-value=7.9e-06  Score=69.40  Aligned_cols=48  Identities=23%  Similarity=0.647  Sum_probs=39.7

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      .+..|.||...     +.||.||.|...+|..|+++....        .|.+.|+|..|..
T Consensus         4 ~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~--------~p~g~W~C~~C~~   51 (60)
T 2puy_A            4 HEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKT--------IPKGMWICPRCQD   51 (60)
T ss_dssp             CCSSCTTTCCC-----SSCEECSSSSCEECGGGSSSCCSS--------CCCSCCCCHHHHH
T ss_pred             CCCCCcCCCCC-----CcEEEcCCCCcCEECCcCCCCcCC--------CCCCceEChhccC
Confidence            45699999853     589999999999999999975532        2778999999964

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=97.82  E-value=1.1e-05  Score=70.69  Aligned_cols=49  Identities=29%  Similarity=0.813  Sum_probs=40.3

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCC-CcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTE-PWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~-~W~Cd~C~~~  751 (1083)
                      .|.||...  ++.+.||.||.|...+|..|+++.....        |.+ .|+|..|...
T Consensus        20 ~C~~C~~~--~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~--------P~g~~W~C~~C~~~   69 (70)
T 3asl_A           20 ACHLCGGR--QDPDKQLMCDECDMAFHIYCLDPPLSSV--------PSEDEWYCPECRND   69 (70)
T ss_dssp             SBTTTCCC--SCGGGEEECTTTCCEEEGGGSSSCCSSC--------CSSSCCCCTTTSCC
T ss_pred             CCcCCCCc--CCCCCEEEcCCCCCceecccCCCCcCCC--------CCCCCcCCcCccCc
Confidence            68999854  4578999999999999999999765422        677 9999999764

>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}

Probab=97.80  E-value=2e-05  Score=92.64  Aligned_cols=95  Identities=12%  Similarity=0.001  Sum_probs=68.3

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      +..|++++.++|+|=--.+++-++    .+++.+|+|+|+++++||+|. ++    .|..|.|||.+.+.-.|..+....
T Consensus        74 ~f~D~~g~~l~LRPd~T~~~aR~~----~~~~~~p~k~~y~g~vfR~er-p~----~~~gR~Ref~Q~g~ei~G~~~~~~  144 (464)
T 4g84_A           74 DLKDQGGELLSLRYDLTVPFARYL----AMNKLTNIKRYHIAKVYRRDN-PA----MTRGRYREFYQCDFDIAGNFDPMI  144 (464)
T ss_dssp             BBCCCSSCCEEECSCSHHHHHHHH----HHTTCSCEEEEEEEEEECCCC-----------CCSEEEEEEEEEESCCSTTH
T ss_pred             EEECCCCCEEEeCCcCcHHHHHHH----HhcCCCCceeEEEecceeccC-Cc----cccCccceeeecceeccCCccchh
Confidence            478999999999994444554443    356789999999999999994 32    256799999999998887654222


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEE
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIAYRVVN  118 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLpyrvv~  118 (1083)
                      ++   .+++..+.++|+.|||.-..+.
T Consensus       145 aD---aEvi~l~~~~l~~lgl~~~~i~  168 (464)
T 4g84_A          145 PD---AECLKIMCEILSSLQIGDFLVK  168 (464)
T ss_dssp             HH---HHHHHHHHHHHHHHTCCCEEEE
T ss_pred             hH---HHHHHHHHHHHHHhCCCCccee
Confidence            33   3688889999999999644443

>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*

Probab=97.68  E-value=8.3e-05  Score=82.38  Aligned_cols=86  Identities=16%  Similarity=0.296  Sum_probs=71.0

Q ss_pred             CCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHH
Q psy11602         18 LDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLD   97 (1083)
Q Consensus        18 ~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~   97 (1083)
                      ++..+|+||..-.++..++. .++...+|+|+|+++++||+|....+       |.+||++++.+.+....      .|.
T Consensus       128 ~~~~~LR~slsp~L~~~l~~-n~~~~~~p~rlfeiG~vFR~E~~~~~-------~~~Ef~ql~~~~~g~~~------~f~  193 (290)
T 3qtc_A          128 DKNFCLRPMLTPNLYNYLRK-LDRALPDPIKIFEIGPCYRKESDGKE-------HLEEFTMLVFWQMGSGC------TRE  193 (290)
T ss_dssp             TTTEEECSCSHHHHHHHHHH-HTTTSCSSEEEEEEEEEECCCSCSSS-------CCSEEEEEEEEEESTTC------CHH
T ss_pred             CCCeeEcccChHHHHHHHHH-hhccCCCCeEEEEEcCEEecCCCCCc-------CcchheEEEEEEEcCCh------HHH
Confidence            36889999998888766654 35567899999999999999964322       68999999999987654      367


Q ss_pred             HHHHHHHHHHHHcCCceEEE
Q psy11602         98 EMIQNSEEFYADLGIAYRVV  117 (1083)
Q Consensus        98 ~~~~~y~~if~~LgLpyrvv  117 (1083)
                      ++..+.+.||+.|||+|++.
T Consensus       194 elkg~le~ll~~lGl~~~~~  213 (290)
T 3qtc_A          194 NLESIITDFLNHLGIDFKIV  213 (290)
T ss_dssp             HHHHHHHHHHHHHTCCCEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEe
Confidence            89999999999999999876

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=97.56  E-value=2.6e-05  Score=69.14  Aligned_cols=53  Identities=28%  Similarity=0.710  Sum_probs=42.8

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+...|.||...  +++..||.||.|...+|..|.|+...+.        +.+.|+|..|...
T Consensus        16 ~~~~~C~~C~~~--~~~~~mi~CD~C~~wfH~~Cv~~~~~~~--------~~~~w~C~~C~~~   68 (75)
T 2k16_A           16 NQIWICPGCNKP--DDGSPMIGCDDCDDWYHWPCVGIMAAPP--------EEMQWFCPKCANK   68 (75)
T ss_dssp             CEEECBTTTTBC--CSSCCEEECSSSSSEEEHHHHTCSSCCC--------SSSCCCCTTTHHH
T ss_pred             CCCcCCCCCCCC--CCCCCEEEcCCCCcccccccCCCCccCC--------CCCCEEChhccCc
Confidence            455689999865  3466899999999999999999976532        4579999999753

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=97.54  E-value=4.8e-05  Score=69.39  Aligned_cols=50  Identities=24%  Similarity=0.583  Sum_probs=40.2

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..+..|.||..+     +.||.||.|..+||..|+.+....        .|.+.|+|..|...
T Consensus        23 ~n~~~C~vC~~~-----g~LL~CD~C~~~fH~~Cl~PpL~~--------~P~g~W~C~~C~~~   72 (88)
T 1fp0_A           23 DSATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQD--------VPGEEWSCSLCHVL   72 (88)
T ss_dssp             SSSSCCSSSCSS-----SCCEECTTSSCEECTTSSSTTCCC--------CCSSSCCCCSCCCC
T ss_pred             CCCCcCcCcCCC-----CCEEECCCCCCceecccCCCCCCC--------CcCCCcCCccccCC
Confidence            456699999943     379999999999999999765432        27899999999754

>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}

Probab=97.51  E-value=0.0001  Score=88.01  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      ++.|++++.++|+|=--.+++-++.    +++.+|+|+|+++++||+|. +.  ..+|  |.|||+..+.-.|..+....
T Consensus       127 ~f~D~~g~~l~LRPd~T~~~aR~~~----~~~~~p~k~yyig~vfR~Er-p~--~~~G--R~ReF~Q~g~ei~G~~~~~~  197 (517)
T 4g85_A          127 DLKDQGGELLSLRYDLTVPFARYLA----MNKLTNIKRYHIAKVYRRDN-PA--MTRG--RYREFYQCDFDIAGNFDPMI  197 (517)
T ss_dssp             BBCCTTSCCEEECSCSHHHHHHHHH----HTTCSCEEEEEEEEEECCCC------------CCEEEEEEEEEESCCCTTH
T ss_pred             EEECCCCCEEEeCCcCcHHHHHHHH----hCCCCCceeEEEeceEeccC-cc--cccC--ccceeeeeceeccCCccchH
Confidence            4789999999999955455555443    46789999999999999994 21  1123  99999999998887654222


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEE
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIAYRVVN  118 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLpyrvv~  118 (1083)
                      ++   .+++..+.++|+.|||.-..+.
T Consensus       198 aD---aEvi~l~~~~l~~lgl~~~~i~  221 (517)
T 4g85_A          198 PD---AECLKIMCEILSSLQIGDFLVK  221 (517)
T ss_dssp             HH---HHHHHHHHHHHHHHCCCCEEEE
T ss_pred             HH---HHHHHHHHHHHHhhcCCccccc
Confidence            33   2688889999999998643333

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=97.46  E-value=5.8e-05  Score=80.11  Aligned_cols=49  Identities=29%  Similarity=0.813  Sum_probs=36.2

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCC-CcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTE-PWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~-~W~Cd~C~~~  751 (1083)
                      .|.+|...  ++.+.||.||.|..++|..|.+++....        |.+ .|+|..|...
T Consensus       176 ~C~vC~~~--~~~~~lL~CD~C~~~yH~~CL~PPL~~v--------P~G~~W~Cp~C~~~  225 (226)
T 3ask_A          176 ACHLCGGR--QDPDKQLMCDECDMAFHIYCLDPPLSSV--------PSEDEWYCPECRND  225 (226)
T ss_dssp             SCSSSCCC--CC--CCEECSSSCCEECSCC--CCCCSC--------CSSSCCCCGGGC--
T ss_pred             CCcCCCCC--CCCCCeEEcCCCCcceeCccCCCCcccC--------CCCCCCCCcCCcCc
Confidence            69999954  4578999999999999999999765422        677 9999999764

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=97.37  E-value=0.00015  Score=67.67  Aligned_cols=50  Identities=26%  Similarity=0.696  Sum_probs=38.2

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      +...| ||...  .++..||.|+.|...+|..|+|+....         ..+.|+|..|...
T Consensus        27 d~vrC-iC~~~--~~~~~mi~Cd~C~~w~H~~C~~~~~~~---------~p~~w~C~~C~~~   76 (98)
T 2lv9_A           27 DVTRC-ICGFT--HDDGYMICCDKCSVWQHIDCMGIDRQH---------IPDTYLCERCQPR   76 (98)
T ss_dssp             CBCCC-TTSCC--SCSSCEEEBTTTCBEEETTTTTCCTTS---------CCSSBCCTTTSSS
T ss_pred             CCEEe-ECCCc--cCCCcEEEcCCCCCcCcCcCCCCCccC---------CCCCEECCCCcCC
Confidence            33455 99854  456799999999999999999986542         2357999999643

>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}

Probab=97.36  E-value=0.00034  Score=82.54  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=67.6

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH--HH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES--WK   94 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s--~~   94 (1083)
                      .++.++|+|-.-.+++-++.... .+..+|+|+|+++++||+|....|       |.|||.+.+.-.|..+. ..+  +.
T Consensus        92 ~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~g-------r~Ref~Q~g~ei~G~~~-~~a~~Da  162 (465)
T 3net_A           92 GSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAKDG-------RFRQFRQCDIDVVGREK-LSLLYDA  162 (465)
T ss_dssp             --CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC-------------CCEEEEEEEEEECSSC-CCHHHHH
T ss_pred             CCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCCCC-------CcceeEEeeEEEECCCC-ccchhhH
Confidence            47899999999999999988765 467899999999999999974333       89999999999998776 344  32


Q ss_pred             HHHHHHHHHHHHHHHcCCc
Q psy11602         95 MLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        95 ~~~~~~~~y~~if~~LgLp  113 (1083)
                         |++....++|+.|||+
T Consensus       163 ---Evi~l~~~~l~~lgl~  178 (465)
T 3net_A          163 ---QMPAIITEIFEAVNIG  178 (465)
T ss_dssp             ---HHHHHHHHHHHHHTCS
T ss_pred             ---HHHHHHHHHHHHcCCC
Confidence               7899999999999996

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=97.33  E-value=7.8e-05  Score=70.59  Aligned_cols=43  Identities=28%  Similarity=0.493  Sum_probs=36.6

Q ss_pred             ccccccccccCCCCCCcceecC--ccCCCccccCCCCCCCCCCCCCcCCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCD--TCHLYYHLACLDPPLLRMPKKTKLMG 1082 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd--~C~~~yH~~Cl~Ppl~~~P~~~~~~~ 1082 (1083)
                      .....|.+|++.+   .|+.||  .|+++||+.||.  |+.+|++.|.+-
T Consensus        13 ~~~~~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp   57 (107)
T 4gne_A           13 MHEDYCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECP   57 (107)
T ss_dssp             SSCSSCTTTCCCS---EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCG
T ss_pred             CCCCCCCcCCCCC---cEeEECCCCCCcccccccCc--CCcCCCCCEECC
Confidence            4667799999644   599999  899999999999  999999996553

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=97.21  E-value=0.00011  Score=62.55  Aligned_cols=41  Identities=29%  Similarity=0.623  Sum_probs=33.4

Q ss_pred             cccccccccCCCCCCcceecCccC---CCccccCCCCCCCCCCCCCcC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCH---LYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~---~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
                      +...| +|++.++ ..|+.||.||   .|||+.|+.  |+.+|++.|.
T Consensus         9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~   52 (60)
T 2vnf_A            9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWF   52 (60)
T ss_dssp             CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCC
T ss_pred             CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEE
Confidence            34445 9999875 6799999955   899999999  8999998743

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=97.16  E-value=0.00014  Score=61.82  Aligned_cols=48  Identities=27%  Similarity=0.776  Sum_probs=37.1

Q ss_pred             CCCccccccCCCCCCCCCcEEEccc--CC-cccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDS--CG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~--C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      .+...| ||+...   ...||.||+  |. ..+|..|.|+...          |.+.|+|..|..
T Consensus         8 ~e~~~C-~C~~~~---~g~mi~CD~cdC~~~wfH~~Cvgl~~~----------p~g~w~C~~C~~   58 (60)
T 2vnf_A            8 NEPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTK----------PRGKWFCPRCSQ   58 (60)
T ss_dssp             -CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSC----------CSSCCCCHHHHC
T ss_pred             CCCCEE-ECCCcC---CCCEEEeCCCCCCCceEehhcCCCCcC----------CCCCEECcCccC
Confidence            344566 998653   358999999  55 6899999998765          568999999975

>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1

Probab=97.14  E-value=9e-05  Score=85.94  Aligned_cols=133  Identities=8%  Similarity=0.035  Sum_probs=77.4

Q ss_pred             EecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEEEe
Q psy11602        197 RIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQFVL  276 (1083)
Q Consensus       197 ~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~~~  276 (1083)
                      .+-..|..++.+.+. ..||.+|.+|++...+......              -++.+.+.+   .||++..-.. +.+. 
T Consensus        17 ~~~~~i~~~~~~~~~-~~G~~ei~tP~l~~~~l~~~~~--------------g~~~~~~~~---~m~~~~D~~g-~~~~-   76 (420)
T 1qe0_A           17 KKWRYIENQLDELMT-FYNYKEIRTPIFESTDLFARGV--------------GDSTDVVQK---EMYTFKDKGD-RSIT-   76 (420)
T ss_dssp             HHHHHHHHHHHHHHH-HHTCEECBCCSEEEHHHHCC----------------------------CCEEECHHHH-CCEE-
T ss_pred             HHHHHHHHHHHHHHH-HcCCEEccCcccchHHHhhhcc--------------CCccchhhh---heEEEEcCCC-CEEE-
Confidence            333555666655553 7899999999999855442221              011111122   3444321110 0111 


Q ss_pred             eCC-----------CCCcch-hhhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        277 TSP-----------HDDESW-KMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       277 ~~~-----------~~~~s~-~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                      ..|           ....+| +++| ++++...+||+.+...  .|+|||.+++...|+.++. .++   .|++..+.++
T Consensus        77 Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~--gR~reF~q~~~e~~~~~~~-~~d---~e~i~~~~~~  150 (420)
T 1qe0_A           77 LRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK--GRYRQFNQFGVEAIGAENP-SVD---AEVLAMVMHI  150 (420)
T ss_dssp             ECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC---------CCEEEEEEEEEESCCCH-HHH---HHHHHHHHHH
T ss_pred             eCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcC--CCcccEEEeeEEEECCCCc-hhH---HHHHHHHHHH
Confidence            111           112355 6778 8888889999875443  6999999999999988853 332   7899999999


Q ss_pred             HHHhCCc-EEEEe
Q psy11602        344 YADLGIA-YRVVN  355 (1083)
Q Consensus       344 ~~~L~lp-yRvv~  355 (1083)
                      |+.|||+ |+++.
T Consensus       151 l~~lgl~~~~i~l  163 (420)
T 1qe0_A          151 YQSFGLKHLKLVI  163 (420)
T ss_dssp             HHHTTCCCEEEEE
T ss_pred             HHHcCCCceEEEE
Confidence            9999998 88764

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=97.13  E-value=0.00024  Score=73.50  Aligned_cols=51  Identities=25%  Similarity=0.552  Sum_probs=41.3

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      +++..|.||..+     +.+|.||.|..++|..|+++....        .|.+.|+|..|....
T Consensus         2 ~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~l~~--------~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            2 PNEDWCAVCQNG-----GELLCCEKCPKVFHLSCHVPTLTN--------FPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSCSSCTTTCCC-----SSCEECSSSSCEECTTTSSSCCSS--------CCSSCCCCTTTSCSS
T ss_pred             CCCCccccCCCC-----CeeeecCCCCcccCccccCCCCCC--------CCCCCEECccccCcc
Confidence            356789999843     459999999999999999876542        278999999998764

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=97.12  E-value=0.00017  Score=61.14  Aligned_cols=49  Identities=24%  Similarity=0.687  Sum_probs=37.8

Q ss_pred             CCCccccccCCCCCCCCCcEEEccc--CC-cccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDS--CG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~--C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+...| +|.+..   ...||.||+  |. --+|..|.|+...          |.+.|+|..|...
T Consensus         7 ~e~~yC-~C~~~~---~g~mi~CD~~~C~~~wfH~~Cvgl~~~----------p~~~w~Cp~C~~~   58 (59)
T 3c6w_A            7 NEPTYC-LCHQVS---YGEMIGCDNPDCPIEWFHFACVDLTTK----------PKGKWFCPRCVQE   58 (59)
T ss_dssp             -CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSC----------CSSCCCCHHHHCC
T ss_pred             CCCcEE-ECCCCC---CCCeeEeeCCCCCCCCEecccCCcccC----------CCCCEECcCccCc
Confidence            345566 998653   357999999  77 5999999998765          5689999999753

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=97.10  E-value=0.00038  Score=61.13  Aligned_cols=50  Identities=26%  Similarity=0.722  Sum_probs=39.3

Q ss_pred             CCCccccccCCCCCCCCCcEEEccc--CC-cccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDS--CG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~--C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .+...| ||.....   ..||.||+  |. .-+|..|.|+...          |.+.|+|..|....
T Consensus        14 ~~~~~C-~C~~~~~---g~MI~CD~~~C~~~wfH~~Cvgl~~~----------p~g~w~Cp~C~~~~   66 (71)
T 1wen_A           14 NEPTYC-LCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTK----------PRGKWFCPRCSQES   66 (71)
T ss_dssp             TSCCCS-TTCCCSC---SSEECCSCSSCSCCCEETTTTTCSSC----------CSSCCCCTTTSSCS
T ss_pred             CCCCEE-ECCCCCC---CCEeEeeCCCCCCccEecccCCcCcC----------CCCCEECCCCCccc
Confidence            455567 9986532   57999999  77 5899999998765          56899999998654

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=97.10  E-value=0.00031  Score=74.15  Aligned_cols=52  Identities=21%  Similarity=0.489  Sum_probs=42.0

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGIA  753 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~~  753 (1083)
                      +.+..|.||..+     ..+|.||.|..++|..|+++....        .|.|.|+|..|.....
T Consensus         5 ~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~--------~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            5 PNEDWCAVCQNG-----GDLLCCEKCPKVFHLTCHVPTLLS--------FPSGDWICTFCRDIGK   56 (207)
T ss_dssp             SSCSSBTTTCCC-----EEEEECSSSSCEECTTTSSSCCSS--------CCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCCCCCC-----CceEEcCCCCCccCCccCCCCCCC--------CCCCCEEeCceeCccc
Confidence            456689999843     369999999999999999876542        2789999999998653

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=97.04  E-value=0.00027  Score=64.82  Aligned_cols=48  Identities=25%  Similarity=0.749  Sum_probs=37.9

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCC---cccccccccccccCCCcccCCCCCCCCccccc-ccC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCG---VTVHEGCYGVQDTASISSTVSSCSTEPWFCES-CRA  750 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~---i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~-C~~  750 (1083)
                      ++...| ||.....   ..||.||+|+   .-+|..|.|+...          |.+.|+|.. |..
T Consensus        24 ~~~~yC-iC~~~~~---g~MI~CD~c~C~~eWfH~~CVgl~~~----------p~~~W~Cp~cC~~   75 (90)
T 2jmi_A           24 QEEVYC-FCRNVSY---GPMVACDNPACPFEWFHYGCVGLKQA----------PKGKWYCSKDCKE   75 (90)
T ss_dssp             CCSCCS-TTTCCCS---SSEECCCSSSCSCSCEETTTSSCSSC----------TTSCCCSSHHHHH
T ss_pred             CCCcEE-EeCCCCC---CCEEEecCCCCccccCcCccCCCCcC----------CCCCccCChhhcc
Confidence            455567 9996533   3699999977   7899999998765          568999999 863

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=97.02  E-value=0.0004  Score=60.99  Aligned_cols=41  Identities=32%  Similarity=0.737  Sum_probs=33.7

Q ss_pred             cccccccccCCCCCCcceecCc--cC-CCccccCCCCCCCCCCCCCcC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDT--CH-LYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
                      +...| +|++..+ ..|+.||.  |. .|||+.|+.  |+.+|++.|.
T Consensus        15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~   58 (71)
T 1wen_A           15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWF   58 (71)
T ss_dssp             SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCC
T ss_pred             CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEE
Confidence            45556 8999876 57999999  66 799999999  8999988744

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=96.94  E-value=0.00027  Score=60.40  Aligned_cols=40  Identities=28%  Similarity=0.573  Sum_probs=32.3

Q ss_pred             cccccccccCCCCCCcceecCccC---CCccccCCCCCCCCCCCCCc
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCH---LYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~---~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
                      +...| +|++.++ ..|+.||.|+   .|||+.|+.  |+..|++.|
T Consensus        10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w   52 (62)
T 2g6q_A           10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKW   52 (62)
T ss_dssp             CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCC
T ss_pred             CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCE
Confidence            34455 9999765 5799999966   999999999  678888774

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=96.91  E-value=0.00034  Score=59.78  Aligned_cols=49  Identities=22%  Similarity=0.613  Sum_probs=37.8

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCC---cccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCG---VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~---i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+...| +|.+..   ...||.||+|+   .-+|..|.|+...          |.+.|+|..|...
T Consensus         9 ~e~~yC-~C~~~~---~g~MI~CD~c~C~~~WfH~~Cvgl~~~----------p~~~w~Cp~C~~~   60 (62)
T 2g6q_A            9 NEPTYC-LCNQVS---YGEMIGCDNEQCPIEWFHFSCVSLTYK----------PKGKWYCPKCRGD   60 (62)
T ss_dssp             -CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSC----------CSSCCCCHHHHTC
T ss_pred             CCCcEE-ECCCCC---CCCeeeeeCCCCCcccEecccCCcCcC----------CCCCEECcCcccC
Confidence            445566 998653   24799999955   7999999998765          5689999999764

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=96.90  E-value=0.00054  Score=62.82  Aligned_cols=42  Identities=24%  Similarity=0.485  Sum_probs=34.2

Q ss_pred             ccccccccccCCCCCCcceecCccC---CCccccCCCCCCCCCCCCCcC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCH---LYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~---~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
                      .+...| +|++.++. .|+.||.|+   .|||+.|+.  |+..|++.|.
T Consensus        24 ~~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~   68 (90)
T 2jmi_A           24 QEEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWY   68 (90)
T ss_dssp             CCSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCC
T ss_pred             CCCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCcc
Confidence            345556 99987664 699999988   999999998  8889988744

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=96.85  E-value=0.00037  Score=58.99  Aligned_cols=40  Identities=38%  Similarity=0.773  Sum_probs=32.7

Q ss_pred             cccccccccCCCCCCcceecCc--cC-CCccccCCCCCCCCCCCCCc
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDT--CH-LYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
                      +...| +|++.++ ..|+.||.  |. .|||+.|+.  |+..|++.|
T Consensus         8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w   50 (59)
T 3c6w_A            8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKW   50 (59)
T ss_dssp             CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCC
T ss_pred             CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCE
Confidence            34445 9999765 57999999  65 799999999  899999874

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=96.78  E-value=0.00079  Score=58.58  Aligned_cols=41  Identities=24%  Similarity=0.599  Sum_probs=34.8

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~ 1076 (1083)
                      .....| +|++..+...|+.||.|+.|||+.|+..+...+|.
T Consensus        17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~   57 (68)
T 3o70_A           17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPE   57 (68)
T ss_dssp             TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCS
T ss_pred             CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCC
Confidence            455556 99999888889999999999999999988776663

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=96.77  E-value=0.00054  Score=71.34  Aligned_cols=49  Identities=24%  Similarity=0.573  Sum_probs=39.1

Q ss_pred             CccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      +..|.||..+     +.++.||.|..++|..|..+....        .|.|.|+|..|....
T Consensus         2 ~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~--------~p~g~W~C~~C~~~~   50 (189)
T 2ro1_A            2 ATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQD--------VPGEEWSCSLCHVLP   50 (189)
T ss_dssp             CCCBTTTCCC-----SSCCCCTTTCCBCCSTTSTTCCSS--------CCCTTCCTTTTSCSC
T ss_pred             CCcCccCCCC-----CceeECCCCCchhccccCCCCccc--------CCCCCCCCcCccCCC
Confidence            4589999843     369999999999999999765432        278999999998653

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.75  E-value=0.00093  Score=61.38  Aligned_cols=42  Identities=31%  Similarity=0.712  Sum_probs=33.8

Q ss_pred             cccccccccCCCCCCcceecCc--cC-CCccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDT--CH-LYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~--C~-~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      +...| +|++..+ ..|+.||.  |. .|||+.|+.  |+..|++.|.|
T Consensus        35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~C   79 (91)
T 1weu_A           35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFC   79 (91)
T ss_dssp             CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCC
T ss_pred             CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEEC
Confidence            44556 9999876 57999999  55 899999999  88899887443

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.73  E-value=0.00089  Score=61.52  Aligned_cols=50  Identities=26%  Similarity=0.727  Sum_probs=39.0

Q ss_pred             CCCccccccCCCCCCCCCcEEEccc--CC-cccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDS--CG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~--C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .+...| ||....   ...||.||+  |. .-+|..|.|+...          |.+.|+|..|....
T Consensus        34 ~e~~yC-iC~~~~---~g~MI~CD~~dC~~~WfH~~CVgl~~~----------p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           34 NEPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTK----------PRGKWFCPRCSQES   86 (91)
T ss_dssp             CCCBCS-TTCCBC---CSCCCCCSCSSCSCCCCCSTTTTCSSC----------CCSSCCCTTTCCCC
T ss_pred             CCCcEE-ECCCCC---CCCEeEecCCCCCCCCEecccCCcCcC----------CCCCEECcCccCcC
Confidence            455566 999653   257999999  66 5799999998765          56899999998654

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=96.57  E-value=0.0017  Score=56.56  Aligned_cols=51  Identities=22%  Similarity=0.685  Sum_probs=40.1

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+...| ||...  +++..||.||.|..=+|..|.|+...+         ..+.|+|..|...
T Consensus        17 ~~~~~C-iC~~~--~~~~~MIqCd~C~~WfH~~Cvgi~~~~---------~~~~~~C~~C~~s   67 (68)
T 3o70_A           17 QGLVTC-FCMKP--FAGRPMIECNECHTWIHLSCAKIRKSN---------VPEVFVCQKCRDS   67 (68)
T ss_dssp             TTCCCS-TTCCC--CTTCCEEECTTTCCEEETTTTTCCTTS---------CCSSCCCHHHHTC
T ss_pred             CCceEe-ECCCc--CCCCCEEECCCCCccccccccCcCccc---------CCCcEECCCCCCC
Confidence            445577 99864  346789999999999999999997642         2368999999754

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=96.49  E-value=0.001  Score=60.62  Aligned_cols=63  Identities=27%  Similarity=0.460  Sum_probs=44.0

Q ss_pred             cccccccccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCC------CCCccccccc
Q psy11602        545 QPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQAD------PFYAHCRLHA  618 (1083)
Q Consensus       545 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~------p~~~~c~~h~  618 (1083)
                      +..|.+|+.+   ..|..|           +|..+.|...||++||..+|++.+....+....+      .+.++|+.|.
T Consensus        17 ~l~C~iC~~~---~~GAci-----------qC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~Hs   82 (87)
T 2lq6_A           17 KLTCYLCKQK---GVGASI-----------QCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHT   82 (87)
T ss_dssp             CCCBTTTTBC---CSSCEE-----------ECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGS
T ss_pred             cCCCcCCCCC---CCcEeE-----------ecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCC
Confidence            4489999842   258887           9999999999999999999976543322111111      3556899887


Q ss_pred             ccc
Q psy11602        619 DKL  621 (1083)
Q Consensus       619 ~k~  621 (1083)
                      -++
T Consensus        83 Ppg   85 (87)
T 2lq6_A           83 PPG   85 (87)
T ss_dssp             SSS
T ss_pred             CcC
Confidence            544

>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*

Probab=96.45  E-value=0.0057  Score=67.14  Aligned_cols=84  Identities=5%  Similarity=-0.149  Sum_probs=68.6

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCC-CCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCch
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEAS-LPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDD   90 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~-LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e   90 (1083)
                      ...|+.++.++|+|=--.+++   .. -..+++ +|+|+|.++++||+|...       -   |||+..+.-.|..+. .
T Consensus        39 ~f~d~~g~~l~LRpd~T~~~a---~~-~~~~~~~~p~R~~y~g~vfR~e~~~-------~---Ref~Q~g~ei~g~~~-~  103 (275)
T 1usy_A           39 FFLDRKGNLFSIREDFTKTVL---NH-RKRYSPDSQIKVWYADFVYRYSGSD-------L---VAEYQLGLEKVPRNS-L  103 (275)
T ss_dssp             CEEETTSCEEEECCCHHHHHH---HH-HTTCTTCCCEEEECCEEEEEEETTE-------E---EEEEEEEEEEESCCS-H
T ss_pred             ccCCCCCCEEEeCCcChHHHH---HH-HhhcCCCCceEEEEeceEEecCCCC-------C---CeeeEeCEEEecCCC-c
Confidence            456888999999998888888   22 234677 999999999999999731       1   999999999998877 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCc
Q psy11602         91 ESWKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        91 ~s~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      .++   .+++....++|+.|||.
T Consensus       104 ~~D---aEvi~l~~~~l~~lgl~  123 (275)
T 1usy_A          104 DDS---LEVLEIIVESASEFFEG  123 (275)
T ss_dssp             HHH---HHHHHHHHHHHHHHCCS
T ss_pred             hhH---HHHHHHHHHHHHHcCCC
Confidence            443   78999999999999985

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=96.37  E-value=0.0027  Score=55.10  Aligned_cols=55  Identities=24%  Similarity=0.583  Sum_probs=38.3

Q ss_pred             CCCccccccCCCCCCCCCcEEEccc--CCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDS--CGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~--C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      ++...| ||+..  .+...||.|++  |..=+|..|+|+...+..    .....+.|+|..|+.
T Consensus         8 e~~v~C-~C~~~--~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~----~~~~p~~~~C~~Cr~   64 (68)
T 2rsd_A            8 EAKVRC-ICSST--MVNDSMIQCEDQRCQVWQHLNCVLIPDKPGE----SAEVPPVFYCELCRL   64 (68)
T ss_dssp             SCEECC-TTCCC--SCCSCEEECSCTTTCEEEETTTSCCCSSTTS----CCCCCSSCCCHHHHH
T ss_pred             CCCEEe-ECCCC--cCCCCEEEECCCCCCCeEchhhCCCCccccc----ccCCCCcEECcCccC
Confidence            334455 99854  34568999995  999999999999764321    111235799999974

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=96.32  E-value=0.003  Score=53.98  Aligned_cols=56  Identities=18%  Similarity=0.357  Sum_probs=42.9

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ++...|.+|..... ++..||.||.|..=+|..|.|+...+..       ..+.|+|..|....
T Consensus         4 ~e~~~C~~C~~~~~-~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~-------~~~~~~C~~C~~k~   59 (64)
T 1we9_A            4 GSSGQCGACGESYA-ADEFWICCDLCEMWFHGKCVKITPARAE-------HIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCC-SSSCEEECSSSCCEEETTTTTCCTTGGG-------GCSSCCCHHHHTTT
T ss_pred             CCCCCCCCCCCccC-CCCCEEEccCCCCCCCccccCcChhHhc-------CCCcEECCCCcCcC
Confidence            56678999987543 3578999999999999999999754210       13689999997643

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=96.28  E-value=0.0017  Score=53.41  Aligned_cols=36  Identities=25%  Similarity=0.633  Sum_probs=31.7

Q ss_pred             cccccCCCCCCcceecCccCCCccccCCCCCCCCCC
Q psy11602       1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMP 1075 (1083)
Q Consensus      1040 c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P 1075 (1083)
                      -++|++..+...|+.||.|+.|||..|+..+...+|
T Consensus         6 ~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~   41 (52)
T 3o7a_A            6 TCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP   41 (52)
T ss_dssp             CSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC
T ss_pred             EEEeCCcCCCCCEEEcCCCCccccccccCCCcccCC
Confidence            468999988889999999999999999998776665

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=96.19  E-value=0.0028  Score=55.63  Aligned_cols=53  Identities=25%  Similarity=0.604  Sum_probs=39.8

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+...| ||..... ++..||.||.|..=+|..|.|+.....        ....|+|..|...
T Consensus        14 ~~~~~C-~C~~~~~-~g~~mI~Cd~C~~W~H~~Cvg~~~~~~--------~~~~~~C~~C~~~   66 (72)
T 1wee_A           14 NWKVDC-KCGTKDD-DGERMLACDGCGVWHHTRCIGINNADA--------LPSKFLCFRCIEL   66 (72)
T ss_dssp             SSEECC-TTCCCSC-CSSCEEECSSSCEEEETTTTTCCTTSC--------CCSCCCCHHHHHH
T ss_pred             CcceEe-eCCCccC-CCCcEEECCCCCCccCCeeeccCcccc--------CCCcEECCCccCC
Confidence            345578 8986532 345799999999999999999975422        3478999999753

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=96.08  E-value=0.0029  Score=54.13  Aligned_cols=38  Identities=29%  Similarity=0.610  Sum_probs=31.8

Q ss_pred             cccccccccCCCC-CCcceecCccCCCccccCCCCCCCC
Q psy11602       1036 LSHKCGLCHLSHD-PHTMAKCDTCHLYYHLACLDPPLLR 1073 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Ppl~~ 1073 (1083)
                      +...|.+|++..+ ...|+.||.|+.|||..|+.-+...
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~   43 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPAR   43 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTG
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhH
Confidence            4566889999875 5789999999999999999876544

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=96.08  E-value=0.00069  Score=67.17  Aligned_cols=43  Identities=21%  Similarity=0.446  Sum_probs=36.4

Q ss_pred             cccccccccCCCCCCcceecCccCCCccccCCCCCCCC-------CCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLR-------MPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~-------~P~~~~~~ 1081 (1083)
                      ....|.+|+..++   |+.||+|...||+.||+|||..       .|.+.|.+
T Consensus        62 ~~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C  111 (142)
T 2lbm_A           62 MDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYC  111 (142)
T ss_dssp             CBCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCC
T ss_pred             CCCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEe
Confidence            3456999999887   9999999999999999999973       58888543

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.02  E-value=0.0021  Score=56.22  Aligned_cols=47  Identities=30%  Similarity=0.749  Sum_probs=36.8

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCC---cccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCG---VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~---i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      +...| +|....   ...||.||+|+   .-+|..|.|+...          |.+.|+|..|..
T Consensus         5 ~~~yC-~C~~~~---~g~MI~CD~cdC~~~WfH~~Cvgl~~~----------p~~~w~Cp~C~~   54 (70)
T 1x4i_A            5 SSGYC-ICNQVS---YGEMVGCDNQDCPIEWFHYGCVGLTEA----------PKGKWYCPQCTA   54 (70)
T ss_dssp             CCCCS-TTSCCC---CSSEECCSCTTCSCCCEEHHHHTCSSC----------CSSCCCCHHHHH
T ss_pred             CCeEE-EcCCCC---CCCEeEeCCCCCCccCCcccccccCcC----------CCCCEECCCCCc
Confidence            34455 798653   34899999986   7899999998765          568999999964

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.99  E-value=0.0026  Score=55.69  Aligned_cols=38  Identities=24%  Similarity=0.516  Sum_probs=30.6

Q ss_pred             cccccCCCCCCcceecCccC---CCccccCCCCCCCCCCCCCcC
Q psy11602       1040 CGLCHLSHDPHTMAKCDTCH---LYYHLACLDPPLLRMPKKTKL 1080 (1083)
Q Consensus      1040 c~~C~~~~~~~~~~~Cd~C~---~~yH~~Cl~Ppl~~~P~~~~~ 1080 (1083)
                      .++|++.++. .|+.||.||   .|||+.|+.  |+..|++.|.
T Consensus         8 yC~C~~~~~g-~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~   48 (70)
T 1x4i_A            8 YCICNQVSYG-EMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWY   48 (70)
T ss_dssp             CSTTSCCCCS-SEECCSCTTCSCCCEEHHHHT--CSSCCSSCCC
T ss_pred             EEEcCCCCCC-CEeEeCCCCCCccCCcccccc--cCcCCCCCEE
Confidence            3469988654 899999997   899999999  6677877743

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=95.97  E-value=0.0043  Score=55.34  Aligned_cols=60  Identities=25%  Similarity=0.545  Sum_probs=42.8

Q ss_pred             CCCCCccccccCCCCCCCCCcEEEcc--cCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        687 KFSKILVCCVCLGERSDDVNEIVECD--SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       687 ~~~~~~~C~VC~~~~~~~~n~iv~Cd--~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ...+...| ||...+  +...||.||  .|..=+|..|.|+...+..   ........|+|..|....
T Consensus        12 ~~~~~~~C-iC~~~~--~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~---~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A           12 QPEIKVRC-VCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMD---GNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             SCCCCCCC-SSCCCC--CCSCEEECSSTTTCCEEEHHHHSCCCTTTC---SCSCSCSSCCCHHHHHCC
T ss_pred             CCCCCEEe-ECCCcC--CCCCEEEECCccCCccccCEEEcccccccc---ccccCCCCEECCCCCccc
Confidence            33456677 999763  456999999  9999999999999765310   000124689999998654

>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}

Probab=95.90  E-value=0.021  Score=67.60  Aligned_cols=149  Identities=13%  Similarity=0.161  Sum_probs=94.7

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      +...|+++-=-.+...+.......+..|+|++.++++||.|.....       +..+|.+++.+....+-      .|..
T Consensus       320 ~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Dat-------HlpeFhQlegl~~~~~v------~f~d  386 (508)
T 3l4g_A          320 RKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDAT-------HLAEFHQIEGVVADHGL------TLGH  386 (508)
T ss_dssp             TBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSS-------SCSEEEEEEEEEEEESC------CHHH
T ss_pred             ccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCC-------cCCeEEEEEEEEECCCC------CHHH
Confidence            3456666554444444443222235689999999999999873221       45679999988876554      5777


Q ss_pred             HHHHHHHHHHHcCC-ceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccc
Q psy11602         99 MIQNSEEFYADLGI-AYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATAC  177 (1083)
Q Consensus        99 ~~~~y~~if~~LgL-pyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~  177 (1083)
                      +....+.||++||+ .+|..  |+-.-+  ..-.+.++++.++.++|.||+.|--.---..+.++|.   .+..+-+.|+
T Consensus       387 LKg~Le~~l~~lG~~~~rfr--ps~fPf--tePS~ev~i~~~G~~~W~EIGg~G~vhP~VL~~~Gip---e~~~v~AfgL  459 (508)
T 3l4g_A          387 LMGVLREFFTKLGITQLRFK--PAYNPY--TEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLP---ENVSVIAWGL  459 (508)
T ss_dssp             HHHHHHHHHHTTTCCCCEEE--ECCCTT--CSSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTCC---TTEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCcceEee--ccCCCC--CCCeEEEEEEECCccceEEEEeeeeEcHHHHHHCCCC---CCceEEEEEe
Confidence            88888999999997 35533  332211  1112333555566668999999776655556666661   1122666788


Q ss_pred             cchhheehee
Q psy11602        178 ATTRVICAIL  187 (1083)
Q Consensus       178 a~~Rli~All  187 (1083)
                      ++.|++....
T Consensus       460 gLeRLaml~~  469 (508)
T 3l4g_A          460 SLERPTMIKY  469 (508)
T ss_dssp             ESHHHHTTTT
T ss_pred             cHHHHHHHHc
Confidence            8888865433

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=95.85  E-value=0.0046  Score=54.23  Aligned_cols=36  Identities=25%  Similarity=0.586  Sum_probs=29.5

Q ss_pred             cccccccccCCCCC-CcceecCccCCCccccCCCCCCC
Q psy11602       1036 LSHKCGLCHLSHDP-HTMAKCDTCHLYYHLACLDPPLL 1072 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~-~~~~~Cd~C~~~yH~~Cl~Ppl~ 1072 (1083)
                      ....| +|++..+. ..|+.||.|+.|||+.|+..+..
T Consensus        15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~   51 (72)
T 1wee_A           15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNA   51 (72)
T ss_dssp             SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTT
T ss_pred             cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCcc
Confidence            44556 79998765 47999999999999999987753

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=95.63  E-value=0.0027  Score=54.74  Aligned_cols=58  Identities=26%  Similarity=0.631  Sum_probs=40.2

Q ss_pred             CCCccccccCCCCCCCCCcEEEcc-cCCcccccccccccccCCCcccCCCCCCCCccccccc
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECD-SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR  749 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd-~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~  749 (1083)
                      +....|.+|..+.. ++..+|.|| .|..=+|..|-|+......  .....+.+.|+|..|.
T Consensus         6 ~~~~~C~~C~~p~~-~~~~mI~CD~~C~~WfH~~Cvglt~~~~~--~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            6 DPVYPCGICTNEVN-DDQDAILCEASCQKWFHRICTGMTETAYG--LLTAEASAVWGCDTCM   64 (65)
T ss_dssp             ---CBCTTTCSBCC-TTSCEEEBTTTTCCEEEHHHHTCCHHHHH--HHHHCTTEEECCHHHH
T ss_pred             CCcCcCccCCCccC-CCCCeEecccCccccCchhccCCCHHHHH--HhhccCCCcEECcCcc
Confidence            44558999997643 467999999 9999999999999753100  0000145689999996

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=95.59  E-value=0.0078  Score=49.40  Aligned_cols=47  Identities=26%  Similarity=0.735  Sum_probs=37.4

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      +=+||+.+  +++..||.|++|..=+|..|.|+...+         ..+.|+|..|..
T Consensus         5 ~~C~C~~~--~~~~~MI~Cd~C~~W~H~~Cvgi~~~~---------~~~~~~C~~C~~   51 (52)
T 3o7a_A            5 VTCFCMKP--FAGRPMIECNECHTWIHLSCAKIRKSN---------VPEVFVCQKCRD   51 (52)
T ss_dssp             BCSTTCCB--CTTCCEEECTTTCCEEETTTTTCCGGG---------CCSSCCCHHHHT
T ss_pred             eEEEeCCc--CCCCCEEEcCCCCccccccccCCCccc---------CCCcEECcCCCC
Confidence            44589854  346799999999999999999997642         246899999964

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=95.48  E-value=0.0054  Score=50.41  Aligned_cols=32  Identities=19%  Similarity=0.564  Sum_probs=27.5

Q ss_pred             ccccccCCCC-CCcceecC-ccCCCccccCCCCC
Q psy11602       1039 KCGLCHLSHD-PHTMAKCD-TCHLYYHLACLDPP 1070 (1083)
Q Consensus      1039 ~c~~C~~~~~-~~~~~~Cd-~C~~~yH~~Cl~Pp 1070 (1083)
                      .|.+|++..+ ...|+.|| .|+.|||..|+.-.
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~   37 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVS   37 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCC
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCC
Confidence            4889999875 67899999 89999999998743

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=95.27  E-value=0.0048  Score=50.68  Aligned_cols=48  Identities=27%  Similarity=0.597  Sum_probs=37.2

Q ss_pred             cccccCCCCCCCCCcEEEcc-cCCcccccccccccccCCCcccCCCCCCCCccccccc
Q psy11602        693 VCCVCLGERSDDVNEIVECD-SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR  749 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd-~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~  749 (1083)
                      .|.+|..+.. ++..||.|| .|..=+|..|.|+...+.        ....|+|..|+
T Consensus         4 ~cc~C~~p~~-~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~--------~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCK-DKVDWVQCDGGCDEWFHQVCVGVSPEMA--------ENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCC-TTCCEEECTTTTCCEEETTTTTCCHHHH--------HHSCCCCSCC-
T ss_pred             cCCCCcCccC-CCCcEEEeCCCCCccCcccccCCCcccc--------CCCCEECCCCC
Confidence            6889987653 467899999 899999999999975421        13689999884

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=95.25  E-value=0.0081  Score=59.54  Aligned_cols=57  Identities=18%  Similarity=0.344  Sum_probs=40.7

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..+..|.||.+     +.+++-||.|-..+|..|..+...+...+ ....|.++|.|-.|...
T Consensus        61 g~~d~C~vC~~-----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~-~i~~p~~~W~C~~C~~~  117 (142)
T 2lbm_A           61 GMDEQCRWCAE-----GGNLICCDFCHNAFCKKCILRNLGRKELS-TIMDENNQWYCYICHPE  117 (142)
T ss_dssp             SCBCSCSSSCC-----CSSEEECSSSCCEEEHHHHHHHTCHHHHH-HHHTSTTCCCCTTTCCC
T ss_pred             CCCCeecccCC-----CCcEEeCCCCCCeeeHhhcCCCCChhhhh-hcccCCCCCEeecccCc
Confidence            45679999984     45899999999999999998654311000 00026789999999753

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=95.11  E-value=0.0048  Score=53.15  Aligned_cols=34  Identities=24%  Similarity=0.674  Sum_probs=27.5

Q ss_pred             ccccccccccCCC-CCCcceecC-ccCCCccccCCC
Q psy11602       1035 VLSHKCGLCHLSH-DPHTMAKCD-TCHLYYHLACLD 1068 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~-~~~~~~~Cd-~C~~~yH~~Cl~ 1068 (1083)
                      .....|.+|++.. +...|+.|| .|+.|||..|+.
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg   41 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG   41 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred             CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence            4566799999984 567899999 999999999975

>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A

Probab=94.96  E-value=0.022  Score=63.00  Aligned_cols=117  Identities=10%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             hhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCC-cEEEEeccCCCcchh
Q psy11602        287 MLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI-AYRVVNIVSGALNHA  364 (1083)
Q Consensus       287 ~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~l-pyRvv~~~~~dl~~~  364 (1083)
                      .+| +++....|||+...  |..|.+||++++.+.+..++    ...|.+++..++.||+.||| +|+++.-. .+..  
T Consensus       147 ~~PlrlfeiG~vFR~E~~--~~~r~~EF~qle~~i~g~~~----~~~f~elkg~le~ll~~LGl~~~~~~~~s-~e~~--  217 (288)
T 3dsq_A          147 DKPIRIFEIGTCYRKESQ--GAQHLNEFTMLNLTELGTPL----EERHQRLEDMARWVLEAAGIREFELVTES-SVVY--  217 (288)
T ss_dssp             CSCEEEEEEEEEECSCCS--SSCCCSEEEEEEEEEETCCG----GGHHHHHHHHHHHHHHHHTCCCCEEEECC-CCSS--
T ss_pred             CCCEEEEEEeeEEecCCC--CCCcCccEEEEEEEEEcCCc----hhhHHHHHHHHHHHHHHcCCCCcEEecCC-cceE--
Confidence            345 66777778886443  56688999999999998763    23489999999999999999 79987643 2321  


Q ss_pred             hhceeeEEEeeCCCCcEEeeecccCcccccc-cccceEEecccCCCCceeeEEeecccccchhHHHHHHHh
Q psy11602        365 AAKKLDLEAWFPGSGAFRELVSCSNCLAYQS-RRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILE  434 (1083)
Q Consensus       365 a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qa-rrl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailE  434 (1083)
                       .+.+|+-  .    .|.||++++ ..-... ++++|.          .  .|.  |.++.+.|++..+..
T Consensus       218 -~~~~~l~--~----~~~eig~~G-v~p~vl~~~~gi~----------~--~~~--gfglglerl~m~~~g  266 (288)
T 3dsq_A          218 -GDTVDVM--K----GDLELASGA-MGPHFLDEKWEIF----------D--PWV--GLGFGLERLLMIREG  266 (288)
T ss_dssp             -CCCEEEE--E----TTEEEEEEE-EESCTTTTTTTCC----------S--CEE--EEEEEHHHHHHHHHT
T ss_pred             -EEEEEEE--e----CCEEEEEEE-ecHHHHHHhcCCC----------C--CeE--EEEECHHHHHHHHcC
Confidence             3456653  2    378999988 443333 333331          1  122  568888998876654

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=94.91  E-value=0.0085  Score=53.03  Aligned_cols=32  Identities=25%  Similarity=0.649  Sum_probs=28.2

Q ss_pred             ccccccCCCCCCcceecCccCCCccccCCCCC
Q psy11602       1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPP 1070 (1083)
Q Consensus      1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Pp 1070 (1083)
                      ..++|++..+...|+.||.|+.|||+.|+.-+
T Consensus        17 ~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~   48 (76)
T 1wem_A           17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGIS   48 (76)
T ss_dssp             CCSTTCCCCCSSCEEECSSSCCEEEHHHHSCC
T ss_pred             CEEECCCccCCCCEEEeCCCCCcEeCeEEccc
Confidence            44499999988899999999999999999754

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=94.82  E-value=0.0099  Score=56.04  Aligned_cols=34  Identities=24%  Similarity=0.688  Sum_probs=28.3

Q ss_pred             ccccccccCCC-CCCcceecC-ccCCCccccCCCCC
Q psy11602       1037 SHKCGLCHLSH-DPHTMAKCD-TCHLYYHLACLDPP 1070 (1083)
Q Consensus      1037 ~~~c~~C~~~~-~~~~~~~Cd-~C~~~yH~~Cl~Pp 1070 (1083)
                      ...|.+|++.- +...|+.|| .|+.|||..|+.-.
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt   38 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMT   38 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCC
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccccccccCCcC
Confidence            35799999983 446799998 99999999999744

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=94.63  E-value=0.015  Score=51.89  Aligned_cols=53  Identities=23%  Similarity=0.612  Sum_probs=39.6

Q ss_pred             ccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       692 ~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .+-++|..... +...||.||.|..=+|..|.|+...+..       ..+.|+|..|....
T Consensus        12 ~~~C~C~~~~d-~~~~MIqCd~C~~WfH~~Cvgl~~~~~~-------~~~~~~C~~C~~~~   64 (79)
T 1wep_A           12 PVYCLCRQPYN-VNHFMIECGLCQDWFHGSCVGIEEENAV-------DIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCSTTSCSCC-SSSCEEEBTTTCCEEEHHHHTCCHHHHT-------TCSBBCCTTTTTTS
T ss_pred             ccEEEcCCccC-CCCceEEcCCCCCcEEeeecCccccccc-------CCCeEECCCccccc
Confidence            34449987542 3679999999999999999998754211       23689999998654

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=94.56  E-value=0.0062  Score=62.23  Aligned_cols=54  Identities=22%  Similarity=0.617  Sum_probs=40.3

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+...| +|..+. ++...||.||.|..-+|..|.|+...+.       ...+.|+|..|...
T Consensus         6 ~~~~~C-~C~~~~-~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~-------~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            6 DTKLYC-ICKTPE-DESKFYIGCDRCQNWYHGRCVGILQSEA-------ELIDEYVCPQCQST   59 (174)
T ss_dssp             -CCEET-TTTEEC-CTTSCEEECTTTCCEEEHHHHTCCHHHH-------TTCSSCCCHHHHHH
T ss_pred             CCCcEe-eCCCCC-CCCCCEeECCCCCchhChhhcCCchhhc-------cCccCeecCCCcch
Confidence            455688 998653 2356899999999999999999865321       13578999999754

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=94.47  E-value=0.012  Score=55.42  Aligned_cols=59  Identities=24%  Similarity=0.589  Sum_probs=42.0

Q ss_pred             CccccccCCCCCCCCCcEEEcc-cCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        691 ILVCCVCLGERSDDVNEIVECD-SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd-~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ...|.+|..+.. ++..+|.|+ .|..=+|..|-|+......  .....+.+.|+|..|....
T Consensus         3 ~~~C~iC~~p~~-~~~~mi~Cdd~C~~WfH~~CVglt~~~~~--~i~~~~~~~~~Cp~C~~~~   62 (105)
T 2xb1_A            3 VYPCGACRSEVN-DDQDAILCEASCQKWFHRECTGMTESAYG--LLTTEASAVWACDLCLKTK   62 (105)
T ss_dssp             CCBCTTTCSBCC-TTSCEEECTTTTCCEEEGGGTTCCHHHHH--HHHHCTTEEECCHHHHHTT
T ss_pred             cCCCCCCCCccC-CCCCEEEecCCcccccccccCCcCHHHHH--hhccCCCCCEECccccCcC
Confidence            348999997643 346799998 9999999999998752100  0000145789999998754

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=94.16  E-value=0.041  Score=53.63  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=39.7

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..+..|.||..     +.+++-||.|-..+|..|..+...+... .....+.++|.|-.|...
T Consensus        55 g~~~~C~vC~d-----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l-~~i~~~~~~W~C~~C~~~  111 (129)
T 3ql9_A           55 GMDEQCRWCAE-----GGNLICCDFCHNAFCKKCILRNLGRREL-STIMDENNQWYCYICHPE  111 (129)
T ss_dssp             SCBSSCTTTCC-----CSEEEECSSSSCEEEHHHHHHHTCHHHH-HHHTCTTSCCCCTTTCCG
T ss_pred             CCCCcCeecCC-----CCeeEecCCCchhhhHHHhCCCcchhHH-HHhccCCCCeEcCCcCCH
Confidence            45668999983     5689999999999999999864321000 000115789999999653

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=94.08  E-value=0.013  Score=52.23  Aligned_cols=32  Identities=25%  Similarity=0.620  Sum_probs=27.0

Q ss_pred             ccccccCCCC-CCcceecCccCCCccccCCCCC
Q psy11602       1039 KCGLCHLSHD-PHTMAKCDTCHLYYHLACLDPP 1070 (1083)
Q Consensus      1039 ~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Pp 1070 (1083)
                      ..++|++..| ...|+.||.|+.|||..|+.-+
T Consensus        13 ~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~   45 (79)
T 1wep_A           13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIE   45 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCC
T ss_pred             cEEEcCCccCCCCceEEcCCCCCcEEeeecCcc
Confidence            3449999875 7899999999999999999743

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=94.01  E-value=0.015  Score=51.46  Aligned_cols=54  Identities=28%  Similarity=0.663  Sum_probs=39.8

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      +...+-+||..+. +.+..||.|+.|..=+|..|.|+...+..       ..+.|+|..|..
T Consensus         7 ~~~~~yCiC~~~~-~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~-------~~~~~~C~~C~~   60 (75)
T 3kqi_A            7 ATVPVYCVCRLPY-DVTRFMIECDACKDWFHGSCVGVEEEEAP-------DIDIYHCPNCEK   60 (75)
T ss_dssp             CCCCEETTTTEEC-CTTSCEEECTTTCCEEEHHHHTCCTTTGG-------GBSSCCCHHHHH
T ss_pred             CCCeeEEECCCcC-CCCCCEEEcCCCCCCEecccccccccccC-------CCCEEECCCCcc
Confidence            3444667998543 23679999999999999999999765321       135799999964

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=93.97  E-value=0.017  Score=51.12  Aligned_cols=54  Identities=20%  Similarity=0.560  Sum_probs=37.7

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      +-++|....  ++..||.||.|..=+|..|.|+...+...   .......|+|..|...
T Consensus        17 ~~C~C~~~~--~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~---l~~~~~~~~C~~C~~~   70 (76)
T 1wem_A           17 LYCICRQPH--NNRFMICCDRCEEWFHGDCVGISEARGRL---LERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCSTTCCCC--CSSCEEECSSSCCEEEHHHHSCCHHHHHH---HHHHTCCCCCHHHHHH
T ss_pred             CEEECCCcc--CCCCEEEeCCCCCcEeCeEEccchhhhhh---ccCCCCeEECcCCcCc
Confidence            444999654  35689999999999999999996542000   0002468999999753

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=93.96  E-value=0.013  Score=51.76  Aligned_cols=39  Identities=26%  Similarity=0.576  Sum_probs=31.0

Q ss_pred             ccccccccCCCC-CCcceecCccCCCccccCCCCCCCCCC
Q psy11602       1037 SHKCGLCHLSHD-PHTMAKCDTCHLYYHLACLDPPLLRMP 1075 (1083)
Q Consensus      1037 ~~~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P 1075 (1083)
                      ....++|++..+ ...|+.||.|+.|||..|+.-+-..++
T Consensus         9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~   48 (75)
T 3kqi_A            9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAP   48 (75)
T ss_dssp             CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGG
T ss_pred             CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccC
Confidence            345669999865 678999999999999999986655444

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=93.86  E-value=0.043  Score=47.49  Aligned_cols=31  Identities=23%  Similarity=0.646  Sum_probs=26.9

Q ss_pred             cccccccCCCCCCcceecCc--cCCCccccCCC
Q psy11602       1038 HKCGLCHLSHDPHTMAKCDT--CHLYYHLACLD 1068 (1083)
Q Consensus      1038 ~~c~~C~~~~~~~~~~~Cd~--C~~~yH~~Cl~ 1068 (1083)
                      .+-++|+...+...|+.||.  |+.|||+.|+.
T Consensus        10 ~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg   42 (68)
T 2rsd_A           10 KVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVL   42 (68)
T ss_dssp             EECCTTCCCSCCSCEEECSCTTTCEEEETTTSC
T ss_pred             CEEeECCCCcCCCCEEEECCCCCCCeEchhhCC
Confidence            34458999988899999996  99999999984

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=93.75  E-value=0.0038  Score=60.90  Aligned_cols=42  Identities=19%  Similarity=0.457  Sum_probs=34.6

Q ss_pred             ccccccccCCCCCCcceecCccCCCccccCCCCCC-----CCC--CCCCcCC
Q psy11602       1037 SHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPL-----LRM--PKKTKLM 1081 (1083)
Q Consensus      1037 ~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl-----~~~--P~~~~~~ 1081 (1083)
                      ...|.+|+..++   ++.||.|.+.||..||+|||     .++  |.+.|.+
T Consensus        57 ~~~C~vC~dGG~---LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C  105 (129)
T 3ql9_A           57 DEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYC  105 (129)
T ss_dssp             BSSCTTTCCCSE---EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCC
T ss_pred             CCcCeecCCCCe---eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEc
Confidence            345999998776   99999999999999999995     455  8888543

>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*

Probab=93.64  E-value=0.47  Score=53.74  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=85.7

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      +..+|+.+-.-.+...+..     ...|++++.++.+||.|..    +..   +..||++++.+.+..+-      .|..
T Consensus       171 ~~~vLRt~tsp~llr~l~~-----~~~piriFEiGrVFR~d~~----d~t---H~pEF~qlegl~~g~~v------~f~d  232 (350)
T 1b7y_A          171 GRLLLRTHTSPMQVRYMVA-----HTPPFRIVVPGRVFRFEQT----DAT---HEAVFHQLEGLVVGEGI------AMAH  232 (350)
T ss_dssp             SCEEECSSSTHHHHHHHHH-----CCSSEEEEEEEEEECCCCC----CSS---CCSEEEEEEEEEEETTC------CHHH
T ss_pred             ccceeeccchHHHHHHHHh-----cCCCeeEEEeeeEEECCCC----CCC---CCChhHEEEEEEECCCC------CHHH
Confidence            3446676555555544443     4779999999999997651    111   33799999999998754      3677


Q ss_pred             HHHHHHHHHHHc-CCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcc-------cceeccCCC
Q psy11602         99 MIQNSEEFYADL-GIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRL-------LVRYGQTKQ  170 (1083)
Q Consensus        99 ~~~~y~~if~~L-gLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl-------~i~y~~~~~  170 (1083)
                      +....+.|++.| |++..+--.++..-+---+.++||  +....++|.+|+.|.-.--...+.+       +|.-.....
T Consensus       233 LKg~le~ll~~lfG~~~~~r~rps~fPft~Ps~e~~i--~~~~~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid~~~~~~  310 (350)
T 1b7y_A          233 LKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAV--WWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGV  310 (350)
T ss_dssp             HHHHHHHHHHHHSCSSCCEEEEECCBTTEEEEEEEEE--EETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTC
T ss_pred             HHHHHHHHHHhhcCCCceEEEecCCCCCCCCccEEEE--EEEeCCCeEEEEEEEEEeHHHHHhhccccccCCCCCccccc
Confidence            888888999988 864322223332222222333333  4332456888888654433344444       551000111


Q ss_pred             ccccccccchhhee
Q psy11602        171 KIYATACATTRVIC  184 (1083)
Q Consensus       171 ~~n~tg~a~~Rli~  184 (1083)
                      ..-..++.+.|++-
T Consensus       311 ~~~afglglerl~m  324 (350)
T 1b7y_A          311 TGFAFGLGVERLAM  324 (350)
T ss_dssp             EEEEEEEEHHHHHH
T ss_pred             eEEEEEEeHHHHHH
Confidence            24455777777643

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=93.58  E-value=0.027  Score=50.13  Aligned_cols=35  Identities=29%  Similarity=0.845  Sum_probs=29.3

Q ss_pred             cccccccccCCCCCCcceecC--ccCCCccccCCCCCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCD--TCHLYYHLACLDPPL 1071 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd--~C~~~yH~~Cl~Ppl 1071 (1083)
                      ....| +|++..+...|+.||  .|+.|||+.|+.-+-
T Consensus        15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~   51 (78)
T 1wew_A           15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPD   51 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCC
T ss_pred             CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcccc
Confidence            34455 899998888999999  999999999997543

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=93.11  E-value=0.033  Score=57.60  Aligned_cols=57  Identities=16%  Similarity=0.431  Sum_probs=40.9

Q ss_pred             ccccccccccCCCC-CcceeecccccccccccCCCccceeeecccccccccccccccccc----cCCCCCCccccccc
Q psy11602        546 PICAVHRDSWLPEA-SLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEV----DQADPFYAHCRLHA  618 (1083)
Q Consensus       546 ~~c~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~----~~~~p~~~~c~~h~  618 (1083)
                      .+|.+|++.|.+.+ +..+          |+||  .|..|+|..|..    |+++..+..    +...++++.|+...
T Consensus         3 ~~CpiC~k~Y~~~~~~~~M----------IqCd--~C~~W~H~~Cvg----i~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKM----------MQCG--KCDRWVHSKCEN----LSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCE----------EECT--TTCCEEEGGGSS----CCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCe----------EECC--CCCcccchhccc----cCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            48999999999876 5667          8999  999999999986    444322211    12357777777554

>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*

Probab=92.54  E-value=0.39  Score=57.12  Aligned_cols=145  Identities=12%  Similarity=0.167  Sum_probs=93.2

Q ss_pred             eeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccc-cCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602         21 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVG-SHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM   99 (1083)
Q Consensus        21 ~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~-~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~   99 (1083)
                      .+|+++-=-.+....+ ..+..+..|++++.++.+||.+.. ..+       +.+||.+.+...+..+.      .|..+
T Consensus       181 svLRTsLlPgLL~~lr-~N~~r~~~pvrLFEIG~VFr~d~~~d~t-------h~~Ef~qLagli~G~~v------df~dL  246 (534)
T 2du3_A          181 LTLRSHMTTGWFITLS-HIADKLPLPIKLFSIDRCFRREQGEDAT-------RLYTYFSASCVLVDEEL------SVDDG  246 (534)
T ss_dssp             EEECSSHHHHHHHHHH-TTTTTSCSSEEEEEEEEEECCCTTCSSS-------CCSEEEEEEEEEECSSC------CHHHH
T ss_pred             cccCccchhhHHHHHH-HHHhCCCCCeeEEEEeeEEecCcccccc-------ccceeeEEEEEEECCCC------CHHHH
Confidence            4677664443434333 234566899999999999997641 111       34799999998887644      35678


Q ss_pred             HHHHHHHHHHcCCc-eEEEEeccC--CCCcccceeEeEEEEecCC--------CceeEEEEcCCCchhhhhcccceeccC
Q psy11602        100 IQNSEEFYADLGIA-YRVVNIVSG--ALNHAAAKKLDLEAWFPGS--------GAFRELVSCSNCLDYQSRRLLVRYGQT  168 (1083)
Q Consensus       100 ~~~y~~if~~LgLp-yrvv~~~sg--dlg~~as~~~diE~~~P~~--------~~~~ev~s~s~cgdyqs~rl~i~y~~~  168 (1083)
                      ....+.|++.||+. ++.......  ...+.-+  ..|+++.|..        ++|.+|+.|.-.---..+.+++.    
T Consensus       247 KgilE~LL~~LGi~~~r~~~~~~~~~~yhPgt~--aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~----  320 (534)
T 2du3_A          247 KAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQ--TEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP----  320 (534)
T ss_dssp             HHHHHHHHGGGTCCEEEEEECTTCCTTBCTTTC--EEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCC----
T ss_pred             HHHHHHHHHHcCCCeEEEEECCCCcccccCCeE--EEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCC----
Confidence            88889999999996 666543211  1444433  5566665532        35788988765555556666663    


Q ss_pred             CCccccccccchhheehe
Q psy11602        169 KQKIYATACATTRVICAI  186 (1083)
Q Consensus       169 ~~~~n~tg~a~~Rli~Al  186 (1083)
                       ..+...++.+.|++..+
T Consensus       321 -~~v~afeLgLErLaMl~  337 (534)
T 2du3_A          321 -YPVMNLGLGVERLAMIL  337 (534)
T ss_dssp             -SCEEEEEEEHHHHHHHH
T ss_pred             -CcEEEEEecHHHHHHhh
Confidence             22566678888876543

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=91.56  E-value=0.04  Score=49.27  Aligned_cols=35  Identities=23%  Similarity=0.611  Sum_probs=29.7

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPP 1070 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Pp 1070 (1083)
                      ..-..|.||.... .+.++-|..|.+.||..||.++
T Consensus        13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence            3556799999766 5668899999999999999998

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=91.45  E-value=0.07  Score=47.74  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=47.1

Q ss_pred             ecccccCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCC----CcccCCCCCCCCcccccccCC
Q psy11602        681 QLEDFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTAS----ISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       681 ~~~d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~----~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      +++.......|..|.||..-+   .+.++-|.-|+..+|..|........    ..-+....++..|.|--|.+-
T Consensus         5 ~~~~~e~~~~D~~C~VC~~~t---~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL   76 (89)
T 1wil_A            5 SSGPREPVVNDEMCDVCEVWT---AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI   76 (89)
T ss_dssp             CCCSCCCCCCSCCCTTTCCCC---SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred             ccCcccCCCCCcccCcccccc---ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence            344445567899999998653   57899999999999999986531100    011112236788999999874

>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*

Probab=91.23  E-value=0.37  Score=53.27  Aligned_cols=70  Identities=11%  Similarity=0.035  Sum_probs=46.5

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeecccccccc--ccCCCCCCCceEEE-EEeEEEEEEEeCCCchHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEV--GSHGRDTRGIFRVH-QFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~--~~~gk~trGL~R~r-EF~~~e~~~~~~~~~e~s   92 (1083)
                      -.+++++|..+.|..+--+..    .   -|.|+|+|+++||+|.  ...+       |.+ ||+|+|.+.+..+. ++.
T Consensus        65 ~~~~~~~L~~Spe~~~~~l~~----~---g~~rvf~ig~~FR~E~pq~~~~-------RH~~EFtqle~e~~~~~~-~~l  129 (294)
T 1nnh_A           65 IYGVKMRLTHSMILHKQLAIA----M---GLKKIFVLSPNIRLESRQKDDG-------RHAYEFTQLDFEVERAKM-EDI  129 (294)
T ss_dssp             ETTEEEEECSCSHHHHHHHHH----T---TCCEEEEEEEEECCCCGGGCSS-------SCCSEEEEEEEEEETCCH-HHH
T ss_pred             cCCCCEEeccChHHHHHHHhh----c---CccceEEEEccEeCCCCCCCCC-------ccccceeEEEEEecCCCH-HHH
Confidence            345678897666654433332    1   2779999999999998  3223       445 99999999998764 444


Q ss_pred             HHHHHHHH
Q psy11602         93 WKMLDEMI  100 (1083)
Q Consensus        93 ~~~~~~~~  100 (1083)
                      ....++++
T Consensus       130 ~~~~e~l~  137 (294)
T 1nnh_A          130 MRLIERLV  137 (294)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*

Probab=90.64  E-value=1.5  Score=48.42  Aligned_cols=79  Identities=15%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      +..+|+++-.-.+...++...   ...|++++.++.+||.+..    +..   ...||++.+.+....+-      .|..
T Consensus       108 e~~vLRtsl~p~ll~~l~~N~---~~~~~riFEiG~Vfr~d~~----d~~---h~~Ef~~Le~~~~g~~~------df~d  171 (294)
T 2rhq_A          108 DEILMRTHTSPVQARTMEKRN---GQGPVKIICPGKVYRRDSD----DAT---HSHQFTQIEGLVVDKNI------KMSD  171 (294)
T ss_dssp             SSEEECSSSHHHHHHHHHHTT---TCSCEEEEEEEEEECCCCC----BTT---BCSEEEEEEEEEEESSC------CHHH
T ss_pred             CcceeeccCHHHHHHHHHhcC---CCCCccEEEEcCEEecCCC----CCC---CCChhhEEEEEEECCCC------CHHH
Confidence            456888888877777666544   5789999999999997541    111   22499999999998654      3677


Q ss_pred             HHHHHHHHHHHc-CCc
Q psy11602         99 MIQNSEEFYADL-GIA  113 (1083)
Q Consensus        99 ~~~~y~~if~~L-gLp  113 (1083)
                      +....+.+++.| |++
T Consensus       172 lKg~le~ll~~l~g~~  187 (294)
T 2rhq_A          172 LKGTLELVAKKLFGAD  187 (294)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            888888899988 875

>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}

Probab=90.37  E-value=0.33  Score=56.59  Aligned_cols=73  Identities=11%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEE-EEeEEEEEEEeCCCch
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH-QFEKVEQFVLTSPHDD   90 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~r-EF~~~e~~~~~~~~~e   90 (1083)
                      ...|..+++++|.-+.|..+--+...        +.|+|+++++||+|....+       |.. ||+|+|.+....+. +
T Consensus       173 f~~~~~~~~~~L~~Spql~~~~~~~g--------~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~~-~  236 (429)
T 1wyd_A          173 FPVIYFGKEAFLAQSPQLYKELMAGV--------VERVFEVAPAWRAEESDTP-------FHLAEFISMDVEMAFADY-N  236 (429)
T ss_dssp             CEEEETTEEEEECSCCHHHHHHHHHH--------HSEEEEEEEEECCCCCCSS-------SCCSEEEEEEEEEETCCH-H
T ss_pred             EEEecCCceEEecCCcHHHHHHHHhC--------cCceEEEcccccccCCccc-------cccceeeEeeeeecCCCH-H
Confidence            34455677889976666553333321        6799999999999974333       555 99999999988764 5


Q ss_pred             HHHHHHHHHH
Q psy11602         91 ESWKMLDEMI  100 (1083)
Q Consensus        91 ~s~~~~~~~~  100 (1083)
                      +.....++++
T Consensus       237 dlm~~~e~ll  246 (429)
T 1wyd_A          237 DVMQLLEKIL  246 (429)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555555

>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A

Probab=89.78  E-value=0.16  Score=58.64  Aligned_cols=65  Identities=22%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             chhhhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc-EEEE
Q psy11602        284 SWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA-YRVV  354 (1083)
Q Consensus       284 s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp-yRvv  354 (1083)
                      +++++| ++++...+||+.+...|  |.+||...-.-.|..++ .++   -.|++..+.++|+.|||+ |+++
T Consensus        96 ~~~~lP~rl~~~g~vfR~e~p~~g--R~REf~Q~g~e~~g~~~-~~a---d~e~i~~~~~~l~~lgl~~~~i~  162 (421)
T 1h4v_B           96 KVWPQPVRLWMAGPMFRAERPQKG--RYRQFHQVNYEALGSEN-PIL---DAEAVVLLYECLKELGLRRLKVK  162 (421)
T ss_pred             cccCCCeEEEEecCeecCCCCCCC--CcccEEEccEEEECCCC-hhh---hHHHHHHHHHHHHHcCCCceEEE
Confidence            456778 88898999999866556  99999984444444432 122   247889999999999998 7765

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=88.98  E-value=0.09  Score=50.03  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             ccccccccccCCCC-CCcceecCccCCCccccCCCCCCCCCCCCC
Q psy11602       1035 VLSHKCGLCHLSHD-PHTMAKCDTCHLYYHLACLDPPLLRMPKKT 1078 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~ 1078 (1083)
                      ..+..|..|....+ +..|+.|+.|+.+||..|+.++...++.+.
T Consensus        57 ~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~  101 (117)
T 4bbq_A           57 SLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEE  101 (117)
T ss_dssp             TTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSS
T ss_pred             cccCcccccccccccCcceEEeeecCCeEECCCCCCCcccccccc
Confidence            34445555544433 556889999999999999999987765543

>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*

Probab=88.57  E-value=0.42  Score=56.62  Aligned_cols=71  Identities=14%  Similarity=0.078  Sum_probs=48.0

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      |..+.+++|+-..|.-+=-++.    +   -.-|+|+|++|||+|--..       -|..||+|+|.|....+. ++..+
T Consensus       218 ~~~~~~~yLr~SpqLylk~l~v----~---G~~rVyeig~~FR~E~~~~-------rH~pEFT~lE~e~af~d~-~dlm~  282 (493)
T 3a74_A          218 NALDMTLYMRIAIELHLKRLIV----G---GLEKVYEIGRVFRNEGIST-------RHNPEFTMLELYEAYADF-RDIMK  282 (493)
T ss_dssp             TTTTEEEEECSCSHHHHHHHHH----T---TCCEEEEEEEEECCCCCBT-------TBCSEEEEEEEEEETCCH-HHHHH
T ss_pred             cCCCceeEEecCHHHHHHHHhh----c---ccCceEEECccccCCCCCc-------ccCCceeEEEEEecCCCH-HHHHH
Confidence            5567789999555632211111    1   1458999999999997432       388999999999988764 45555


Q ss_pred             HHHHHH
Q psy11602         95 MLDEMI  100 (1083)
Q Consensus        95 ~~~~~~  100 (1083)
                      ..++|+
T Consensus       283 l~E~ll  288 (493)
T 3a74_A          283 LTENLI  288 (493)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A

Probab=88.48  E-value=0.46  Score=55.38  Aligned_cols=72  Identities=17%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEE-EEeEEEEEEEeCCCchH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH-QFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~r-EF~~~e~~~~~~~~~e~   91 (1083)
                      ..|..+++++|+-+.|..+-.+..        -|.|+|+++++||+|....+       |.. ||+|+|.+....+. ++
T Consensus       175 ~~~~~~~~~~Lr~Spel~~~~~~~--------g~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~~-~d  238 (434)
T 1x54_A          175 KLKYFDKYAYLSQSAQLYLEAAIF--------GLEKVWSLTPSFRAEKSRTR-------RHLTEFWHLELEAAWMDL-WD  238 (434)
T ss_dssp             EEEETTEEEEECSCSHHHHHHHHH--------HHSEEEEEEEEECCCCCCCS-------SCCSEEEEEEEEEETCCH-HH
T ss_pred             EEeecCCcEEeccChHHHHHHHhc--------CccceEEEecceecCCCCCc-------ccccEEEEeeEEEcCCCH-HH
Confidence            445566778998444543322221        27799999999999974333       445 99999999988764 55


Q ss_pred             HHHHHHHHH
Q psy11602         92 SWKMLDEMI  100 (1083)
Q Consensus        92 s~~~~~~~~  100 (1083)
                      .....++++
T Consensus       239 lm~~~e~ll  247 (434)
T 1x54_A          239 IMKVEEELV  247 (434)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=88.42  E-value=0.26  Score=50.85  Aligned_cols=59  Identities=22%  Similarity=0.482  Sum_probs=37.9

Q ss_pred             ccccccCCCCCCC--CCcEEEcccCCcccccccccccccCCCcccCCCCC-CCCcccccccCCC
Q psy11602        692 LVCCVCLGERSDD--VNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCS-TEPWFCESCRAGI  752 (1083)
Q Consensus       692 ~~C~VC~~~~~~~--~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~-~~~W~Cd~C~~~~  752 (1083)
                      ..|.||.....++  +..||.||.|..=||..|-|+......  ..+..| ...|+|..|....
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e--~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYE--ILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHH--HHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHH--HhhcCCCCCeeECcCCCCCC
Confidence            3799998654432  235999999999999999998641000  000001 1368888887654

>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*

Probab=87.90  E-value=0.33  Score=54.97  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=44.9

Q ss_pred             CCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         19 DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        19 ~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      .++||.-+.|.-+--++..-      + =|+|||++|||+|--.+       -|.-||+|+|.|....+. ++..+..++
T Consensus        89 ~~~yL~~Spql~~k~l~~~g------~-~rvyqIg~~FR~E~~~~-------rH~pEFt~lE~e~af~d~-~d~m~~~E~  153 (345)
T 3a5y_A           89 MNLWLMTSPEYHMKRLLVAG------C-GPVFQLCRSFRNEEMGR-------YHNPEFTMLEWYRPHYDM-YRLMNEVDD  153 (345)
T ss_dssp             EEEEECSCSHHHHHHHHHTT------C-CSEEEEEEEECCCCCBT-------TBCSEEEEEEEEEETCCH-HHHHHHHHH
T ss_pred             CCEeecCCHHHHHHHHHHcC------C-CcEEEEEcceeCCCCcc-------cccchhheeeeeeeCCCH-HHHHHHHHH
Confidence            56888777775544233221      1 28999999999998432       278899999999887754 444444444


Q ss_pred             HH
Q psy11602         99 MI  100 (1083)
Q Consensus        99 ~~  100 (1083)
                      ++
T Consensus       154 li  155 (345)
T 3a5y_A          154 LL  155 (345)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*

Probab=87.66  E-value=0.94  Score=53.57  Aligned_cols=81  Identities=15%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEE-EEeEEEEEE-EeCCCc
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH-QFEKVEQFV-LTSPHD   89 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~r-EF~~~e~~~-~~~~~~   89 (1083)
                      ...+..++.++|+-+.|..+--++.    .   -+-|+|+|++|||+|-...+       |.. ||+|+|.+. |..+. 
T Consensus       217 f~~~~~~~~~~L~~Spql~~k~l~~----~---g~~rvy~ig~~FR~E~~~~~-------Rh~pEFt~le~e~af~~~~-  281 (487)
T 1eov_A          217 FEVTYFKGKAYLAQSPQFNKQQLIV----A---DFERVYEIGPVFRAENSNTH-------RHMTEFTGLDMEMAFEEHY-  281 (487)
T ss_dssp             CEEEETTEEEEECSCTHHHHHHHHH----T---TCCEEEEEEEEECCCCCCCT-------TCCSEEEEEEEEEECSSCT-
T ss_pred             ceeccCCccEEcccChHHHHHHHHh----c---CCCceEEEeccEecCCCCCC-------ccchhhhhhhhhhhhhcCH-
Confidence            3444456788998777764422221    1   14599999999999984333       555 999999976 55444 


Q ss_pred             hHHHHHHHHHH-HHHHHHH
Q psy11602         90 DESWKMLDEMI-QNSEEFY  107 (1083)
Q Consensus        90 e~s~~~~~~~~-~~y~~if  107 (1083)
                      ++..+..++|+ .+...+.
T Consensus       282 ~dlm~l~E~ll~~l~~~v~  300 (487)
T 1eov_A          282 HEVLDTLSELFVFIFSELP  300 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            55666666665 3333443

>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=87.53  E-value=2.5  Score=47.39  Aligned_cols=125  Identities=13%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             CCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHHHHHHHHHHc---CCceEEE
Q psy11602         41 PEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADL---GIAYRVV  117 (1083)
Q Consensus        41 s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~~y~~if~~L---gLpyrvv  117 (1083)
                      .+...|++++.++.+||.+....        ...+|.++|.+..+.+-      .|..+....+.|++.|   ++.+|. 
T Consensus       179 ~~~~~pirifeiGrVyR~d~d~t--------h~p~fhqlegl~v~~~v------~f~dLKg~Le~~l~~lfg~~~~vr~-  243 (327)
T 3pco_A          179 KAQQPPIRIIAPGRVYRNDYDQT--------HTPMFHQMEGLIVDTNI------SFTNLKGTLHDFLRNFFEEDLQIRF-  243 (327)
T ss_dssp             TTCCSSCCBCCEECCBCSCCBTT--------BCSBCCEEEEEEEETTC------CHHHHHHHHHHHHHHHHCSCSEEEE-
T ss_pred             HhCCCCeeEEeeccEEecCCCcc--------cCCcccEEEEEEECCCC------CHHHHHHHHHHHHHHHhCCCceEEE-
Confidence            34578999999999999974322        22347777777766443      4677788888888887   466553 


Q ss_pred             EeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCccccccccchhheehe
Q psy11602        118 NIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQKIYATACATTRVICAI  186 (1083)
Q Consensus       118 ~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~~n~tg~a~~Rli~Al  186 (1083)
                       .|+-.-+---+.+.|  ++.. .++|.||+-|--.--...+.++|.  .......+.|+++.|++...
T Consensus       244 -rps~fPftePs~ead--I~~~-~G~w~EIgg~G~VHP~Vl~~~gid--~~~~~g~AFglgleRlaml~  306 (327)
T 3pco_A          244 -RPSYFPFTEPSAEVD--VMGK-NGKWLEVLGCGMVHPNVLRNVGID--PEVYSGFAFGMGMERLTMLR  306 (327)
T ss_dssp             -EEECCTTEEEEEEEE--EECS-SSCEEEEEEEEEECHHHHHTTTCC--TTTCEEEEEEEEHHHHHHHH
T ss_pred             -ecCcCCCCCCcEEEE--EEEe-CCCeEEEEEEEEECHHHHHHcCCC--CccceEEEEEechHHHHHHH
Confidence             344332222234444  4542 466899988754443445555552  11122566788888885543

>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A

Probab=87.41  E-value=0.29  Score=58.14  Aligned_cols=71  Identities=15%  Similarity=0.111  Sum_probs=47.5

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      +..+.++||+-..|.-+=-++..   .    .-|+|+|++|||+|--.    +   -|..||+|+|.|....+. ++..+
T Consensus       227 ~~~~~~~yL~~SpqLylk~L~v~---G----~~rVyeIg~~FR~E~~~----~---rH~pEFt~lE~e~af~d~-~dlm~  291 (504)
T 1e1o_A          227 NALDLDMYLRIAPELYLKRLVVG---G----FERVFEINRNFRNEGIS----V---RHNPEFTMMELYMAYADY-HDLIE  291 (504)
T ss_dssp             TTTTEEEEECSCSHHHHHHHHHH---T----CCEEEEEEEEECCCCCC----C----CCSEEEEEEEEEESCCH-HHHHH
T ss_pred             CCCCceEEeccCHHHHHHHHhhc---C----CCcEEEEcccccCCCCC----c---cccCceeeeeeeecCCCH-HHHHH
Confidence            45677899986666333222211   1    34899999999999732    2   388899999999988764 45555


Q ss_pred             HHHHHH
Q psy11602         95 MLDEMI  100 (1083)
Q Consensus        95 ~~~~~~  100 (1083)
                      ..++|+
T Consensus       292 l~E~li  297 (504)
T 1e1o_A          292 LTESLF  297 (504)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}

Probab=87.21  E-value=0.28  Score=57.69  Aligned_cols=126  Identities=14%  Similarity=0.206  Sum_probs=72.4

Q ss_pred             ccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhc-cccccccccCceEeeecc-ceEEEEee
Q psy11602        200 DCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQ-VGSHGRDTRGIFRVHQFE-KVEQFVLT  277 (1083)
Q Consensus       200 ~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e-~g~h~~dl~~i~Rv~qfd-~~~~~~~~  277 (1083)
                      ..|..++.+.+. ..||.+|.+|++...+......               ++ .+.+.+   .+|+...-+ + +.+.+ 
T Consensus        50 ~~l~~~i~~~~~-~~Gy~eI~tP~le~~el~~~~~---------------G~~~d~~~~---~my~~~D~~~g-~~l~L-  108 (467)
T 4e51_A           50 EFFEATVKSLLR-AYGYQNIRTPIVEHTPLFTRGI---------------GEVTDIVEK---EMYSFVDALNG-ENLTL-  108 (467)
T ss_dssp             HHHHHHHHHHHH-HTTCEECBCCSEEEHHHHHHHT---------------CTTSHHHHH---TCCEEECTTTC-CEEEE-
T ss_pred             HHHHHHHHHHHH-HcCCEEEECCccccHHHhhhcc---------------CCccccccc---ceEEEecCCCC-CEEEe-
Confidence            445555555553 7899999999998866543331               11 010111   344332211 1 11111 


Q ss_pred             CCC-----------CCcchhhhh-hhhcccccccccccCcCceeEEEeee--EEEEEEeCCCchhHHHHHHHHHHHHHHH
Q psy11602        278 SPH-----------DDESWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEK--VEQFVLTSPHDDESWKTLDEMIQNSEEF  343 (1083)
Q Consensus       278 ~~~-----------~~~s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~k--vE~f~~~~~~~~~s~~~~e~~~~~~e~~  343 (1083)
                      .|.           ...++ .+| +++....+||+.+..+|  |++||+.  +|+|+...+   .+.   .|++..+.++
T Consensus       109 RPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~g--R~ReF~Q~d~ei~g~~~~---~ad---aEvi~l~~~~  179 (467)
T 4e51_A          109 RPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQRG--RYRQFHQVGVEALGFAGP---DAD---AEIVMMCQRL  179 (467)
T ss_dssp             CSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC-----CCSEEEEEEEEEETCCCS---HHH---HHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHccccc-CCCEEEEEEccEEccCCCCCC--CcCceEEEEEEEEeCCCh---HHH---HHHHHHHHHH
Confidence            110           12234 356 77888889998765554  7778887  666655444   232   6899999999


Q ss_pred             HHHhCC-cEEEEe
Q psy11602        344 YADLGI-AYRVVN  355 (1083)
Q Consensus       344 ~~~L~l-pyRvv~  355 (1083)
                      |+.||| .|+|..
T Consensus       180 l~~lGl~~~~i~i  192 (467)
T 4e51_A          180 WEDLGLTGIKLEI  192 (467)
T ss_dssp             HHHHTCCCEEEEE
T ss_pred             HHHcCCCceEEEE
Confidence            999999 476654

>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1

Probab=86.99  E-value=0.4  Score=55.65  Aligned_cols=64  Identities=14%  Similarity=0.143  Sum_probs=47.8

Q ss_pred             hhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc--EEEEec
Q psy11602        287 MLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA--YRVVNI  356 (1083)
Q Consensus       287 ~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp--yRvv~~  356 (1083)
                      ++| ++++...+||+.+...|  |.+||...-.-.|..++ ..+   -.|++..+.++|+.|||+  |+++.-
T Consensus        97 ~lP~rl~~~g~vfR~erp~~g--R~REF~Q~d~ei~g~~~-~~a---d~E~i~~~~~~l~~lgl~~~~~i~l~  163 (434)
T 1wu7_A           97 QRPLRWYSFPKVWRYEEPQAG--RYREHYQFNADIFGSDS-PEA---DAEVIALASSILDRLGLQDIYEIRIN  163 (434)
T ss_dssp             CSSEEEEECCEEECCCCSCSS--CCSEEEEEEEEEESCCS-HHH---HHHHHHHHHHHHHHTTTTTSEEEEEE
T ss_pred             CCCeEEEEEcCeecCCCCCCC--CccceEEeeEEEEcCCC-hHh---hHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            467 88888899999876666  99999986555555443 223   336889999999999998  887644

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=86.32  E-value=0.23  Score=47.17  Aligned_cols=43  Identities=23%  Similarity=0.603  Sum_probs=30.0

Q ss_pred             CCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        705 VNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       705 ~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      +..|++|+.|...||..|.++.....+    .....+.|.|..|...
T Consensus        72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~----~~~~~~~~~C~~C~~~  114 (117)
T 4bbq_A           72 EKKLMECCICNEIVHPGCLQMDGEGLL----NEELPNCWECPKCYQE  114 (117)
T ss_dssp             GGSCEEETTTCCEECGGGCCSCCCCEE----CSSSSSEEECTTTC--
T ss_pred             CcceEEeeecCCeEECCCCCCCccccc----cccCCCCeECCCCcCC
Confidence            456999999999999999998543211    1123456999999754

>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*

Probab=85.30  E-value=0.96  Score=52.72  Aligned_cols=69  Identities=13%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEE-EEeEEEEEEEeCCCchHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH-QFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~r-EF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      .+.+++|.-..|.-+=-++.    .    -=|+|||++|||+|--..+       |.. ||+|.|.|....+. ++..+.
T Consensus       176 ~g~~~~L~~SpqLylq~l~~----g----~~rvfeIg~~FR~E~~~t~-------RH~~EFT~lE~e~af~d~-~d~m~~  239 (435)
T 2xgt_A          176 FGEQSFLTQSSQLYLETCIP----T----LGDVFCIAQSYRAEKSRTR-------RHLAEYAHVEAECPFITL-DDLMEK  239 (435)
T ss_dssp             TTEEEEECSCSHHHHHHHHH----H----HCSEEEEEEEECCCSSCCT-------TCCSEEEEEEEEEESCCH-HHHHHH
T ss_pred             CCcccccCCChHHHHHHhhh----c----cCceEEEecceecCCCCcc-------ccccceeEEEEEEecCCH-HHHHHH
Confidence            45566777666633222211    1    1389999999999973222       334 99999999988765 667777


Q ss_pred             HHHHHH
Q psy11602         96 LDEMIQ  101 (1083)
Q Consensus        96 ~~~~~~  101 (1083)
                      .++|+.
T Consensus       240 ~E~li~  245 (435)
T 2xgt_A          240 IEELVC  245 (435)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766663

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=84.53  E-value=0.13  Score=60.09  Aligned_cols=53  Identities=26%  Similarity=0.629  Sum_probs=40.2

Q ss_pred             CccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ....|+|..+. +++..||.||.|..=+|..|.|+...+..       ..+.|+|..|...
T Consensus         4 ~~~yCiC~~~~-d~~~~MIqCD~C~~WfH~~CVgi~~~~~~-------~~~~y~C~~C~~~   56 (447)
T 3kv4_A            4 VPVYCLCRLPY-DVTRFMIECDMCQDWFHGSCVGVEEEKAA-------DIDLYHCPNCEVL   56 (447)
T ss_dssp             CCEETTTTEEC-CTTSCEEECTTTCCEEEHHHHTCCHHHHT-------TEEECCCHHHHHH
T ss_pred             CCeEEeCCCcC-CCCCCeEEcCCCCcccccccCCcCccccc-------CCCEEECCCCccc
Confidence            34778998653 34679999999999999999999764210       2367999999753

>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*

Probab=84.00  E-value=0.92  Score=52.69  Aligned_cols=73  Identities=10%  Similarity=0.075  Sum_probs=31.7

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEE-EEeEEEEEEEeCCCchH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVH-QFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~r-EF~~~e~~~~~~~~~e~   91 (1083)
                      ..|..+++++|.-+.|..+ .++..      - +-|+|+|+++||+|....+       |.. ||+|+|.+....++.++
T Consensus       165 ~~~~~g~~~~L~~Spel~~-~~l~~------g-~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~d~~d  229 (422)
T 1n9w_A          165 GVDYFEKRAYLAQSPQLYK-QIMVG------V-FERVYEVAPVWRMEEHHTS-------RHLNEYLSLDVEMGFIADEED  229 (422)
T ss_dssp             --------------CHHHH-HHHHH------H-HSEEEEEEEC--------------------CCEEEEEEEESCSSHHH
T ss_pred             EEeeCCCcEEeeeCHHHHH-HHHhh------C-CCceeEEeCceECCCCCCC-------cccceeEEeeeeeeCCCCHHH
Confidence            4456677889975556543 33221      1 3699999999999974333       555 99999999998844455


Q ss_pred             HHHHHHHHH
Q psy11602         92 SWKMLDEMI  100 (1083)
Q Consensus        92 s~~~~~~~~  100 (1083)
                      ..+..++++
T Consensus       230 lm~l~e~ll  238 (422)
T 1n9w_A          230 LMRLEEALL  238 (422)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=83.84  E-value=0.22  Score=58.97  Aligned_cols=53  Identities=28%  Similarity=0.646  Sum_probs=39.5

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      ....-|+|..+. +.+..||.||.|..=+|..|.|+...+..       ..+.|+|..|..
T Consensus        35 ~~~~yC~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~-------~~~~~~C~~C~~   87 (488)
T 3kv5_D           35 PPPVYCVCRQPY-DVNRFMIECDICKDWFHGSCVGVEEHHAV-------DIDLYHCPNCAV   87 (488)
T ss_dssp             CCCEETTTTEEC-CTTSCEEEBTTTCCEEEHHHHTCCGGGGG-------GEEEBCCHHHHH
T ss_pred             CCCeEEeCCCcC-CCCCCeEEccCCCCceeeeecCcCccccc-------CCCEEECCCCcC
Confidence            334556998653 23678999999999999999999765210       135799999985

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=83.54  E-value=0.47  Score=58.20  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             eeeccccCCCCCCCCceeeccCCCCcccccchhh--hHHHHH-H-----hhhhcccceecccccCCCCCccccccCCCCC
Q psy11602        631 LVCCVCLGERSDDVNEIVECDSCGVTVHEVKIQQ--EFLAIK-F-----LIRYLLFWFQLEDFSKFSKILVCCVCLGERS  702 (1083)
Q Consensus       631 ~~c~~c~g~~~~~~~~l~~C~~Cg~~~h~~~~~~--~~~~i~-~-----~~~~~~~W~~~~d~~~~~~~~~C~VC~~~~~  702 (1083)
                      .+|++|.+.--.-.+-=+.|..||...|..|..+  ..|.-. .     .....-.|+.    ..+.....|++|...-.
T Consensus        49 ~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~----~~~~~~~~C~~C~~~l~  124 (674)
T 3pfq_A           49 TFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKI----HTYSSPTFCDHCGSLLY  124 (674)
T ss_dssp             -----------------------------------------------------CCCCCE----ECCSSCCCCSSSCSCCB
T ss_pred             CccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceee----cCCCCCCCCCccccccc
Confidence            4699996643333344688999999999999753  111100 0     0001112221    12345669999976433


Q ss_pred             CCCCcEEEcccCCccccccccc
Q psy11602        703 DDVNEIVECDSCGVTVHEGCYG  724 (1083)
Q Consensus       703 ~~~n~iv~Cd~C~i~VH~~CYG  724 (1083)
                      .-..+-+.|..|++.||..|..
T Consensus       125 g~~~qg~~C~~C~~~~H~~C~~  146 (674)
T 3pfq_A          125 GLIHQGMKCDTCMMNVHKRCVM  146 (674)
T ss_dssp             BSSSCEECCSSSCCCBCSSTTS
T ss_pred             hhhcCccccccCCcchhhhhhh
Confidence            3345889999999999999964

>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}

Probab=83.21  E-value=0.61  Score=55.58  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=49.5

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      -.+.++||+-+.|.-+=-++..- +      =|+|+|+++||+|-    .+++   +.-||+|.|.|....+. ++..+.
T Consensus       221 ~~~~~~yL~~SpqL~lk~liv~g-~------~rVyeig~~FR~E~----~~tr---H~pEFtmlE~e~af~d~-~dlm~l  285 (521)
T 3bju_A          221 ELDMNLYMRIAPELYHKMLVVGG-I------DRVYEIGRQFRNEG----IDLT---HNPEFTTCEFYMAYADY-HDLMEI  285 (521)
T ss_dssp             TTTEEEEECSCSHHHHHHHHHTT-C------CEEEEEEEEECCSC----CBTT---BCSEEEEEEEEEETCCH-HHHHHH
T ss_pred             cCCcceEeeCCHHHHHHHHHhcC-c------CceEEEEcceeCCC----CCCc---cchhhhhhhhhhhcCCH-HHHHHH
Confidence            35678899988885543333221 1      27999999999997    3343   78899999999988754 566666


Q ss_pred             HHHHH
Q psy11602         96 LDEMI  100 (1083)
Q Consensus        96 ~~~~~  100 (1083)
                      .++|+
T Consensus       286 ~E~li  290 (521)
T 3bju_A          286 TEKMV  290 (521)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}

Probab=83.11  E-value=0.77  Score=55.67  Aligned_cols=44  Identities=18%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHH
Q psy11602         48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEM   99 (1083)
Q Consensus        48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~   99 (1083)
                      ++|||++|||+|...    ++   |.-||+|+|.|....+. ++..+..++|
T Consensus       218 rvfqi~~~FR~E~~~----t~---r~pEFt~lE~e~af~d~-~d~m~~~E~l  261 (617)
T 4ah6_A          218 RYFQVARCYRDEGSR----PD---RQPEFTQIDIEMSFVDQ-TGIQSLIEGL  261 (617)
T ss_dssp             EEEEEEEEECCCSSC----SS---SCSEEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred             cEEEEEhheecccCC----CC---cCcceecceeeecCCCH-HHHHHHHHHH
Confidence            899999999999732    22   56899999999987654 3333333333

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=82.81  E-value=0.57  Score=55.40  Aligned_cols=40  Identities=28%  Similarity=0.556  Sum_probs=32.0

Q ss_pred             CCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        704 DVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       704 ~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      ++..||.||.|+-=+|..|-|+......       ..+.|+|..|..
T Consensus        54 ~~~~mI~CD~C~~WfH~~CVgi~~~~a~-------~~~~y~Cp~C~~   93 (528)
T 3pur_A           54 NDFQWIGCDSCQTWYHFLCSGLEQFEYY-------LYEKFFCPKCVP   93 (528)
T ss_dssp             STTSEEECTTTCCEEEGGGTTCCGGGTT-------TEEECCCTTTHH
T ss_pred             cCCCEEECCCCCcCCCCcCCCCChhHhc-------CCCeEECcCCcC
Confidence            3458999999999999999999764211       246899999985

>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*

Probab=82.33  E-value=0.91  Score=54.87  Aligned_cols=46  Identities=17%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHHH
Q psy11602         48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQ  101 (1083)
Q Consensus        48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~~  101 (1083)
                      |+|||++|||+|--...       |.=||+|+|.|....+. ++..+..++|+.
T Consensus       208 rvfqI~~~FR~E~~~t~-------r~pEFT~lE~e~af~d~-~dvm~~~E~li~  253 (585)
T 1c0a_A          208 RYYQIVKCFRDEDLRAD-------RQPEFTQIDVETSFMTA-PQVREVMEALVR  253 (585)
T ss_dssp             EEEEEEEEECCCCCBTT-------BCSEEEEEEEEEESCCH-HHHHHHHHHHHH
T ss_pred             ceEEEeceeecCCCCCC-------cCcccceeeeeecCCCH-HHHHHHHHHHHH
Confidence            89999999999984322       55599999999988765 566666666653

>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A

Probab=82.24  E-value=0.9  Score=54.85  Aligned_cols=45  Identities=18%  Similarity=0.403  Sum_probs=34.2

Q ss_pred             eEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602         48 RYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI  100 (1083)
Q Consensus        48 klyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~  100 (1083)
                      |+|||++|||+|--...       |.=||+|.|.|....+. ++..+..++|+
T Consensus       214 rvfqI~~~FR~E~~~~~-------r~pEFT~lE~e~af~d~-~dvm~~~E~li  258 (580)
T 1l0w_A          214 RYFQIARCFRDEDLRAD-------RQPDFTQLDLEMSFVEV-EDVLELNERLM  258 (580)
T ss_dssp             EEEEEEEEECCCCCCSS-------CCSEEEEEEEEEESCCH-HHHHHHHHHHH
T ss_pred             CeEEEeceeeCCCCCCC-------cCCCccceeeeecCCCH-HHHHHHHHHHH
Confidence            89999999999984221       55599999999988765 55555555555

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=82.21  E-value=0.25  Score=58.35  Aligned_cols=34  Identities=24%  Similarity=0.581  Sum_probs=27.8

Q ss_pred             ccccccccCCCC-CCcceecCccCCCccccCCCCC
Q psy11602       1037 SHKCGLCHLSHD-PHTMAKCDTCHLYYHLACLDPP 1070 (1083)
Q Consensus      1037 ~~~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Pp 1070 (1083)
                      ....|+|++..| ...|+.||.|+.|||..|+.-+
T Consensus        36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~   70 (488)
T 3kv5_D           36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVE   70 (488)
T ss_dssp             CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCC
T ss_pred             CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcC
Confidence            334559999865 7889999999999999999643

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=80.33  E-value=0.46  Score=48.25  Aligned_cols=54  Identities=15%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             CCcccccccccccCCCCCcceeecccccccccccCCCccceeeecccccccccccccccccccCCCCCCcccccc
Q psy11602        543 SEQPICAVHRDSWLPEASLPIRYLGVSTCFRQECDAGMCRTYFHVTCAQREGLLSEATSEEVDQADPFYAHCRLH  617 (1083)
Q Consensus       543 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~~~H~~ca~~~g~~~e~~~~~~~~~~p~~~~c~~h  617 (1083)
                      .+..+| +|++.+-  ++..+          ++||  .|..|||..|..    +++...  ......+++.|+..
T Consensus         6 ~~~~~C-~C~~~~~--~~~~m----------i~Cd--~C~~WfH~~Cv~----~~~~~~--~~~~~~~C~~C~~~   59 (174)
T 2ri7_A            6 DTKLYC-ICKTPED--ESKFY----------IGCD--RCQNWYHGRCVG----ILQSEA--ELIDEYVCPQCQST   59 (174)
T ss_dssp             -CCEET-TTTEECC--TTSCE----------EECT--TTCCEEEHHHHT----CCHHHH--TTCSSCCCHHHHHH
T ss_pred             CCCcEe-eCCCCCC--CCCCE----------eECC--CCCchhChhhcC----Cchhhc--cCccCeecCCCcch
Confidence            344599 9997652  34556          7999  899999999974    222211  12345666677643

>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*

Probab=80.17  E-value=2.2  Score=49.68  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             CCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHH
Q psy11602         16 DELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKM   95 (1083)
Q Consensus        16 r~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~   95 (1083)
                      -.+.+++|.-+.|..+=-++..   .    --|+|+|++|||+|....+|      ..-||+|.|.|....+..++..+.
T Consensus       180 ~~~~~~yL~~Spql~~q~l~~~---g----~~rvf~i~~~FR~E~~~t~R------H~pEFt~le~e~a~~~~~~d~m~~  246 (438)
T 3nem_A          180 YFEEDAFLAQSPQLYKQIMMAS---G----LDRVYEIAPIFRAEEHNTTR------HLNEAWSIDSEMAFIEDEEEVMSF  246 (438)
T ss_dssp             ETTEEEEECSCSHHHHHHGGGT---T----CCEEEEEEEEECCCSSCCTT------CCSEEEEEEEEEESCSSHHHHHHH
T ss_pred             eCCccEEEecChHHHHHHHHhc---C----CCceEEEcceEECCCCCCcc------cccceeeeeeeeccCccHHHHHHH
Confidence            3456788987777544333211   1    23999999999999742221      234999999999988844667776


Q ss_pred             HHHHHH
Q psy11602         96 LDEMIQ  101 (1083)
Q Consensus        96 ~~~~~~  101 (1083)
                      .++|+.
T Consensus       247 ~E~li~  252 (438)
T 3nem_A          247 LERLVA  252 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1083
d1seta2	311	d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS	8e-38
d1seta2	311	d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS	2e-32
d1g5ha2	290	d.104.1.1 (A:41-330) The aaRS-like accessory subun	2e-16
d1g5ha2	290	d.104.1.1 (A:41-330) The aaRS-like accessory subun	1e-13
d1nj1a3	265	d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS	3e-15
d1nj1a3	265	d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS	1e-11
d1nj8a3	268	d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)	2e-12
d1nj8a3	268	d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)	3e-10
d1hc7a2	272	d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS)	7e-12
d1hc7a2	272	d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS)	3e-10
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	5e-08
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	6e-04
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	2e-07
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	4e-05
d1weva_	88	g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu	0.002
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	2e-07
d1fp0a1	70	g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-	0.003
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	3e-06
d1weea_	72	g.50.1.2 (A:) PHD finger protein At1g33420 {Thale	0.003
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	7e-06
d1we9a_	64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	1e-05
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	7e-06
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	1e-04
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.002
d1wewa_	78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	3e-04
d1wepa_	79	g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus	4e-04

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score =  142 bits (358), Expect = 8e-38
 Identities = 77/214 (35%), Positives = 116/214 (54%), Gaps = 7/214 (3%)

Query: 9   GDSAPEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTR 68
                      D YL  T+E  + A+H    LP  +LP+RY G +  FR E GS G+D R
Sbjct: 98  YRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVR 157

Query: 69  GIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAA 128
           G+ RVHQF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G +    
Sbjct: 158 GLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGK 217

Query: 129 AKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK------IYATACATTRV 182
            +++D+E + P  G +RE  SCS  LD+Q+RR  +RY   + +      +  TA AT R+
Sbjct: 218 WRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRI 277

Query: 183 ICAILETHQTETG-VRIPDCLRKFVPAVYLNEAG 215
           +  +LE HQ + G VR+P  L  ++    L   G
Sbjct: 278 LAMLLENHQLQDGRVRVPQALIPYMGKEVLEPCG 311

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score =  126 bits (317), Expect = 2e-32
 Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 4/150 (2%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
           D RG+ RVHQF KVEQ+VLT    + S +   E+++N+EE    L + YR+V + +G + 
Sbjct: 155 DVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG 214

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
               +++D+E + P  G +RE  SCS  L +Q+RR  +RY   +    ++ + + LN TA
Sbjct: 215 PGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTA 271

Query: 423 CATTRVICAILETHQTETG-VRIPDCLRKF 451
            AT R++  +LE HQ + G VR+P  L  +
Sbjct: 272 LATPRILAMLLENHQLQDGRVRVPQALIPY 301

>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (194), Expect = 2e-16
 Identities = 19/180 (10%), Positives = 44/180 (24%), Gaps = 17/180 (9%)

Query: 22  YLIATSEQPICAVHRDSW-LPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVE 80
            L AT        + +   L    LP     +  CF     +  +    + RV +  +  
Sbjct: 114 KLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVS-NSNQTPSSVTRVGEKTEAS 172

Query: 81  QFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPG 140
               T       W   D  +++   ++    ++    +            +   + ++  
Sbjct: 173 LVWFTPTRTSSQWL--DFWLRHRLLWWRKFAMSPSNFSSADCQDELG---RKGSKLYYSF 227

Query: 141 SGAFRELVSCSNCLDYQSRRLLVRYGQT-----KQKIYA-----TACATTRVICAILETH 190
                 + +  N  D +          T      +K         +        A L   
Sbjct: 228 PWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDS 287

>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 10/136 (7%), Positives = 34/136 (25%), Gaps = 6/136 (4%)

Query: 302 LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGAL 361
                + RV +  +      T       W   D  +++   ++    ++    +      
Sbjct: 157 QTPSSVTRVGEKTEASLVWFTPTRTSSQWL--DFWLRHRLLWWRKFAMSPSNFSSADCQD 214

Query: 362 NHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNE-KIEFVHMLNA 420
                 +   + ++        + +  N    +          T +  + +   V  + +
Sbjct: 215 ELG---RKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLS 271

Query: 421 TACATTRVICAILETH 436
            +        A L   
Sbjct: 272 VSGDVDLGTLAYLYDS 287

>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

 Score = 74.9 bits (183), Expect = 3e-15
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 9/176 (5%)

Query: 22  YLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQ 81
            L  TSE  +  +          LP+R+  V   FR E     + TR + RV +    ++
Sbjct: 95  ALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYE----TKHTRPLIRVREITTFKE 150

Query: 82  FVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGS 141
                    E+ + ++  ++  +EF+  LGI Y +           +   +  +   P  
Sbjct: 151 AHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPDG 210

Query: 142 GAFRELVSCSNCLDYQSRRLLVRY----GQTKQKIYATACATTRVICAILETHQTE 193
               ++ +  N     +R   +++    G  +         + RVI +++  H  E
Sbjct: 211 K-TLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDE 265

>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 303 DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALN 362
            TR + RV +    ++         E+ + ++  ++  +EF+  LGI Y +         
Sbjct: 135 HTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKF 194

Query: 363 HAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATA 422
             +   +  +   P      ++ +  N     +R   +++   +      E+VH      
Sbjct: 195 PGSEYTVAFDTLMPDGK-TLQIGTVHNLGQTFARTFEIKF---ETPEGDHEYVHQ--TCY 248

Query: 423 CATTRVICAILETHQTE 439
             + RVI +++  H  E
Sbjct: 249 GLSDRVIASVIAIHGDE 265

>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 9/185 (4%)

Query: 13  PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFR 72
            +        L  TSE PI  + +        LPI+   +   FR E     + TR + R
Sbjct: 89  GKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYE----TKHTRPLIR 144

Query: 73  VHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKL 132
           + +    ++        +E+   + E I   ++F+  LGI Y +           A   +
Sbjct: 145 LREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTM 204

Query: 133 DLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRY----GQTKQKIYATACATTRVICAILE 188
             +  FP  G   ++ +  N     S+   + +    G            + RVI +I+ 
Sbjct: 205 AFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISDRVIASIIA 263

Query: 189 THQTE 193
            H  E
Sbjct: 264 IHGDE 268

>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

 Score = 59.9 bits (144), Expect = 3e-10
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 22/228 (9%)

Query: 228 EETKKQKKQKEGMKKKLTMSLFSQVGSH--------GRDTRGIFRVHQFEKVEQFVLTSP 279
               +    +      +   L ++   H           T G       +   +    +P
Sbjct: 47  NLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETP 106

Query: 280 HDDESWKMLDEMIQNSEEFYADL--------DTRGIFRVHQFEKVEQFVLTSPHDDESWK 331
                   +        + Y  +         TR + R+ +    ++        +E+  
Sbjct: 107 IYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEN 166

Query: 332 TLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCL 391
            + E I   ++F+  LGI Y +           A   +  +  FP  G   ++ +  N  
Sbjct: 167 QVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLG 225

Query: 392 AYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETHQTE 439
              S+   + +   +      ++ +        + RVI +I+  H  E
Sbjct: 226 QNFSKTFEIIF---ETPTGDKDYAYQ--TCYGISDRVIASIIAIHGDE 268

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 64.9 bits (157), Expect = 7e-12
 Identities = 21/176 (11%), Positives = 45/176 (25%), Gaps = 10/176 (5%)

Query: 19  DDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEK 78
           +   +  TSE  I  +          LP          R E+ +        F   +   
Sbjct: 100 EPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHT 159

Query: 79  VEQFVLTSPHDDESWKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWF 138
                  +  +      +            +      +  + +     A A         
Sbjct: 160 AHATREEAEEEVRRMLSIYA------RLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEAL 213

Query: 139 PGSGAFRELVSCSNCLDYQSRRLLVRY-GQTKQKIY---ATACATTRVICAILETH 190
              G   +  +     +  +R   +++  +  Q  Y    +   + R I AI+ TH
Sbjct: 214 MKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTH 269

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 59.9 bits (144), Expect = 3e-10
 Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 13/243 (5%)

Query: 195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGS 254
           G  I + +++ +  ++  E G         I     +K+ +  EG   +L +   +    
Sbjct: 39  GYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEE 97

Query: 255 HGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMIQNSEEF-YADLDTRGIFRVHQF 313
                                      D    +         E           F   + 
Sbjct: 98  LEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEG 157

Query: 314 EKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEA 373
                        +E+ + +  M+        +      +  + +     A A       
Sbjct: 158 HTAHA------TREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIE 211

Query: 374 WFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAIL 433
                G   +  +        +R   +++   +  + ++++VH    +   + R I AI+
Sbjct: 212 ALMKDGKALQAGTSHYLGENFARAFDIKF---QDRDLQVKYVHT--TSWGLSWRFIGAII 266

Query: 434 ETH 436
            TH
Sbjct: 267 MTH 269

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            +C +C    +   +  CD C+  +HL CL P L  +P 
Sbjct: 2    RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPD 39

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
           C VC   +  + ++++ CD C    H  C            +       W C +C+
Sbjct: 3   CKVC--RKKGEDDKLILCDECNKAFHLFCLRPA--------LYEVPDGEWQCPACQ 48

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 692 LVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
           L C VC        N++VEC  C    H+ C+       ++    +     W+C  C 
Sbjct: 17  LACVVCRQMTVASGNQLVECQECHNLYHQDCHKP----QVTDKEVNDPRLVWYCARCT 70

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 1036 LSHKCGLCHLSHDP--HTMAKCDTCHLYYHLACLDPPLLRMPKKTKLMGW 1083
            +   C +C        + + +C  CH  YH  C  P +         + W
Sbjct: 15   MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 631 LVCCVCLGERSDDVNEIVECDSCGVTVH 658
           L C VC        N++VEC  C    H
Sbjct: 17  LACVVCRQMTVASGNQLVECQECHNLYH 44

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 1034 GVLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            G L     +C +   P  +  C+ C   +HL C  P L  +P 
Sbjct: 1    GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPG 43

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
           +C VC         ++V C+ C    H  C+           +     E W C  C  
Sbjct: 9   ICRVC-----QKPGDLVMCNQCEFCFHLDCHLP--------ALQDVPGEEWSCSLCHV 53

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
           V C C G + DD   ++ CD CGV  H  C G+ +  ++           + C  C  
Sbjct: 17  VDCKC-GTKDDDGERMLACDGCGVWHHTRCIGINNADALP--------SKFLCFRCIE 65

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 1040 CGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            CG      D   M  CD C +++H  C+         
Sbjct: 21   CGTKD--DDGERMLACDGCGVWHHTRCIGINNADALP 55

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 8/56 (14%)

Query: 694 CCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCR 749
           C  C GE        + CD C +  H  C  +    +          + + C SC 
Sbjct: 9   CGAC-GESYAADEFWICCDLCEMWFHGKCVKITPARAEHI-------KQYKCPSCS 56

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 1037 SHKCGLCHLSHDP-HTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079
            S +CG C  S+        CD C +++H  C+     R     +
Sbjct: 6    SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQ 49

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
           + C+C   +  +   ++ CD C    H  C G+ +        +    E + C +C  
Sbjct: 17  LYCIC--RQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNG---EDYICPNCTI 69

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 1038 HKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPK 1076
            H    C +  D   +  CDTC   YH+ CL+PPL  +P 
Sbjct: 7    HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPN 45

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
            C VC      D  E++ CD+C  + H  C            +       W C  C  
Sbjct: 11  FCRVC-----KDGGELLCCDTCPSSYHIHCLNPP--------LPEIPNGEWLCPRCTC 55

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA 750
           V CVC      D     E   C V  H GC  + D        +    E ++CE CR 
Sbjct: 17  VRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPD---KPMDGNPPLPESFYCEICRL 71

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 686 SKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFC 745
           S  + + V C+C  +  +  + ++EC  C    H  C G+++  ++         + + C
Sbjct: 6   SGMALVPVYCLC-RQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV-------DIDIYHC 57

Query: 746 ESCRA 750
             C A
Sbjct: 58  PDCEA 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1083
d1seta2	311	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	100.0
d1seta2	311	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	100.0
d1nj8a3	268	Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc	99.96
d1nj1a3	265	Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth	99.96
d1hc7a2	272	Prolyl-tRNA synthetase (ProRS) {Thermus thermophil	99.92
d1nyra4	291	Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a	99.91
d1qf6a4	291	Threonyl-tRNA synthetase (ThrRS) {Escherichia coli	99.9
d1nyra4	291	Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a	99.9
d1nj1a3	265	Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth	99.89
d1nj8a3	268	Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc	99.88
d1hc7a2	272	Prolyl-tRNA synthetase (ProRS) {Thermus thermophil	99.83
d1g5ha2	290	The aaRS-like accessory subunit of mitochondrial p	99.73
d1g5ha2	290	The aaRS-like accessory subunit of mitochondrial p	99.7
d1qf6a4	291	Threonyl-tRNA synthetase (ThrRS) {Escherichia coli	99.65
d1b76a2	331	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	99.41
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.76
d1atia2	394	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	98.66
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	98.45
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	98.13
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.11
d1atia2	394	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	97.98
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	97.97
d1b76a2	331	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	97.9
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	97.7
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	97.68
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	97.58
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	97.5
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.39
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	97.26
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.17
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	96.87
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	96.8
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	96.77
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	96.61
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	96.53
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	96.41
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	96.4
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	96.16
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	96.15
d1z7ma1	318	ATP phosphoribosyltransferase regulatory subunit H	95.06
d1h4vb2	324	Histidyl-tRNA synthetase (HisRS) {Thermus thermoph	93.69
d1qe0a2	325	Histidyl-tRNA synthetase (HisRS) {Staphylococcus a	93.6
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	93.58
d1wu7a2	327	Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop	93.52
d1jjca_	266	Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS	92.99
d1kmma2	322	Histidyl-tRNA synthetase (HisRS) {Escherichia coli	91.61
d1usya_	275	ATP phosphoribosyltransferase regulatory subunit H	91.55
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	82.92
d1nnha_	293	Hypothetical protein PF1951 {Archaeon Pyrococcus f	82.73
d1b8aa2	335	Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ	81.48
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	80.13

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=100.00  E-value=1.1e-58  Score=515.18  Aligned_cols=243  Identities=28%  Similarity=0.471  Sum_probs=218.1

Q ss_pred             cCCCeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-
Q psy11602        191 QTETGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-  269 (1083)
Q Consensus       191 ~~~~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-  269 (1083)
                      ..++|++|..||.+||.+.+. .+||+||.+|.+|+.+                ++.+.++.+.+.++   +|.+...+ 
T Consensus        51 l~g~~a~Le~AL~~~~ld~~~-~~gy~~v~~P~lv~~~----------------~~~~~G~~p~f~~~---~y~~~~~~~  110 (311)
T d1seta2          51 LKGDLALYELALLRFAMDFMA-RRGFLPMTLPSYAREK----------------AFLGTGHFPAYRDQ---VWAIAETDL  110 (311)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEEHH----------------HHHHHTCTTTTGGG---SCBBTTSSE
T ss_pred             EECHHHHHHHHHHHHHHHhhh-cccceEEeechhhccc----------------hhhhcccccccccc---cccccccce
Confidence            445678899999999999985 8999999999999944                44555566666663   44443323 


Q ss_pred             ---ceEEEEeeCCCCCcc--hhhhh-hhhcccccccc-----cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHH
Q psy11602        270 ---KVEQFVLTSPHDDES--WKMLD-EMIQNSEEFYA-----DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQ  338 (1083)
Q Consensus       270 ---~~~~~~~~~~~~~~s--~~~~~-~~~~~~~~~~~-----~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~  338 (1083)
                         +++++++++.|.++-  +++|| ++.+.+.|||+     |++||||||||||+|||||++|.+..++|+++|++|++
T Consensus       111 ~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~  190 (311)
T d1seta2         111 YLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLE  190 (311)
T ss_dssp             EECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             eecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHH
Confidence               788888898888875  88999 88999999995     78999999999999999999999888999999999999


Q ss_pred             HHHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEee
Q psy11602        339 NSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHML  418 (1083)
Q Consensus       339 ~~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htl  418 (1083)
                      +++++|++|+||||||++|+||||++|+++||||||||++++|+||+|||||+|||||||+|||++.   +++.+|||||
T Consensus       191 ~~~~~~~~L~lpyrvv~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev~S~sn~~d~qsrRl~i~y~~~---dg~~~~~htl  267 (311)
T d1seta2         191 NAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTL  267 (311)
T ss_dssp             HHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTCEEECT---TSCEEECEEE
T ss_pred             HHHHHHHhhCCcchhccccCCCCchHHHhhhHHHHhHhhcCCcccccCceecchHHHhhcccEEECC---CCCEEeEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999975   5678999999


Q ss_pred             cccccchhHHHHHHHhhccCCCc-eecCccccccCCCcc
Q psy11602        419 NATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVY  456 (1083)
Q Consensus       419 n~t~~a~~R~i~ailEn~q~~~G-i~iP~~L~py~~~~~  456 (1083)
                      |||++|++|+|+|||||||++|| |.||++|+||||..+
T Consensus       268 ngT~~ai~R~l~allEn~q~~dG~v~iP~~L~py~~~~~  306 (311)
T d1seta2         268 NNTALATPRILAMLLENHQLQDGRVRVPQALIPYMGKEV  306 (311)
T ss_dssp             EEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHSSSE
T ss_pred             cCchhHHHHHHHHHHHhccCCCCcEeCChhhhhhcCCce
Confidence            99999999999999999999999 889999999998654

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=100.00  E-value=4.2e-49  Score=437.87  Aligned_cols=194  Identities=39%  Similarity=0.685  Sum_probs=185.6

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .+++++|+||||+++++|++++++++++||+|++++++|||.|+|++|+++|||+|+|||+|+|+|+++.+..++|.+++
T Consensus       106 ~~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~  185 (311)
T d1seta2         106 AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAF  185 (311)
T ss_dssp             TTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHH
T ss_pred             cccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999988768899999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-----
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-----  171 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-----  171 (1083)
                      ++++++++.|+++|+||||+|++++||||++++++||||+|||+.++|+||+|||||+|||||||+|+|++.++.     
T Consensus       186 ~~~~~~~~~~~~~L~lpyrvv~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev~S~sn~~d~qsrRl~i~y~~~dg~~~~~h  265 (311)
T d1seta2         186 QELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAY  265 (311)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTCEEECTTSCEEECE
T ss_pred             HHHHHHHHHHHHhhCCcchhccccCCCCchHHHhhhHHHHhHhhcCCcccccCceecchHHHhhcccEEECCCCCEEeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987654     


Q ss_pred             -cccccccchhheeheeccccCCCe-eEecccccccccccc
Q psy11602        172 -IYATACATTRVICAILETHQTETG-VRIPDCLRKFVPAVY  210 (1083)
Q Consensus       172 -~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L~p~~~~~~  210 (1083)
                       +|+|++|++|+|+|||||||+++| |.||++|+|||+...
T Consensus       266 tlngT~~ai~R~l~allEn~q~~dG~v~iP~~L~py~~~~~  306 (311)
T d1seta2         266 TLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMGKEV  306 (311)
T ss_dssp             EEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHSSSE
T ss_pred             EecCchhHHHHHHHHHHHhccCCCCcEeCChhhhhhcCCce
Confidence             899999999999999999999999 779999999996543

>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=99.96  E-value=2e-30  Score=282.85  Aligned_cols=173  Identities=21%  Similarity=0.269  Sum_probs=160.7

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEe-EEEEEEEeCCCchHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFE-KVEQFVLTSPHDDES   92 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~-~~e~~~~~~~~~e~s   92 (1083)
                      +|+.+++++|+||+|.+++.+++++++||++||+||||++++||+|.    +.++||+|+|||. |.+.|+|+.+. +++
T Consensus        90 ~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~----~~~~GllR~reF~~~dd~~~~~~~~-~~~  164 (268)
T d1nj8a3          90 KTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYET----KHTRPLIRLREIMTFKEAHTAHSTK-EEA  164 (268)
T ss_dssp             SSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCC----SCCBTTTBCSBCSCEEEEEEEESSH-HHH
T ss_pred             cccchhhhhcccCCCchhHHhhhhhccchhhhheEEeeccccccccc----cccccceeEEEEeeechhceecccc-chh
Confidence            45667889999999999999999999999999999999999999998    4568999999997 66777788777 789


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc-
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK-  171 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~-  171 (1083)
                      ++.++.++++|++||++|||||+++.+++++++.++.+++++++|+| .+++.|+++++++|+++|++|+|+|.+.+|. 
T Consensus       165 ~~~~~~~~~~y~~if~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~e~~t~~~lg~~~s~~f~l~y~~~dg~~  243 (268)
T d1nj8a3         165 ENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETPTGDK  243 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECT-TSCEEEEEEEEEEETHHHHHTTCEEECTTSSE
T ss_pred             hHHHHHHHHHHHHHHHhcCcceeeccccccccccchhcccchhhhhh-ccccEEEeeecccCCCcChhcCCEEECCCCCC
Confidence            99999999999999999999999999999999999999999999999 6778999999999999999999999988875 


Q ss_pred             ----cccccccchhheeheeccccCC
Q psy11602        172 ----IYATACATTRVICAILETHQTE  193 (1083)
Q Consensus       172 ----~n~tg~a~~Rli~Alle~~~~~  193 (1083)
                          ++++|++ +|+|+||||+|+|+
T Consensus       244 ~~~h~~~~G~~-eR~ia~liE~h~D~  268 (268)
T d1nj8a3         244 DYAYQTCYGIS-DRVIASIIAIHGDE  268 (268)
T ss_dssp             EECEEEEEEEC-THHHHHHHHHHCBT
T ss_pred             cceeeccCcHH-HHHHHHHHHHhCCC
Confidence                7888888 89999999999985

>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=99.96  E-value=2.8e-30  Score=280.94  Aligned_cols=172  Identities=19%  Similarity=0.275  Sum_probs=157.1

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEe-EEEEEEEeCCCchHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFE-KVEQFVLTSPHDDESW   93 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~-~~e~~~~~~~~~e~s~   93 (1083)
                      |+.+++++|+||+|..++.+++++++||++||+++||+++|||+|+    +.++||+|+|||+ |.+.++|+.+. ++++
T Consensus        88 ~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~----~~~~Gl~R~reF~~~~d~~~~~~~~-~~~~  162 (265)
T d1nj1a3          88 SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET----KHTRPLIRVREITTFKEAHTIHATA-SEAE  162 (265)
T ss_dssp             EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCC----SCCBTTTBCSEEEEEEEEEEEESSH-HHHH
T ss_pred             cccceeEEeecccccceEEeeeeeeccccccceEEEeeccceeeec----ccCcCCEEEEEEEEeccceeecCCH-HHHH
Confidence            4566789999999999999999999999999999999999999998    4458999999996 56666666666 8899


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc--
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK--  171 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~--  171 (1083)
                      +.|+.++++|+++|+.|+|||+++.+++++++.++.+++|+|+|+|. +.+.++++++++|+++|++|+|+|.+.++.  
T Consensus       163 ~e~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~e~~~~~~lg~~~s~~f~i~y~d~~g~~~  241 (265)
T d1nj1a3         163 EQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETPEGDHE  241 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECTTSCEE
T ss_pred             HHhhhhHHHHHHHHhhcCCceeEEEccCcccccccccccchhhcccc-cccceecchhhcchhhHHhcCCEEECCCCCEE
Confidence            99999999999999999999999999999999999999999999995 567999999999999999999999988775  


Q ss_pred             ---cccccccchhheeheeccccCC
Q psy11602        172 ---IYATACATTRVICAILETHQTE  193 (1083)
Q Consensus       172 ---~n~tg~a~~Rli~Alle~~~~~  193 (1083)
                         +++.|++ +|+|+||||+|+||
T Consensus       242 ~~h~~~~G~~-eR~i~~llE~~~dd  265 (265)
T d1nj1a3         242 YVHQTCYGLS-DRVIASVIAIHGDE  265 (265)
T ss_dssp             ECEEEEEEEC-THHHHHHHHHTCCS
T ss_pred             EEEEecccHH-HHHHHHHHHHhCCC
Confidence               5677777 89999999999885

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.8e-26  Score=247.82  Aligned_cols=172  Identities=14%  Similarity=0.066  Sum_probs=151.9

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      +..+++++|+||+|++++.+++++++||++||+++||+++|||+|+++     +|+.|+|+|.+.+++.|+... ++++.
T Consensus        96 ~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~-----~g~~r~r~~~~~~~~~~~~~~-~~~~~  169 (272)
T d1hc7a2          96 EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT-----RPFLRTSEFLWQEGHTAHATR-EEAEE  169 (272)
T ss_dssp             SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC-----BTTTBCSEEEEEEEEEEESSH-HHHHH
T ss_pred             ccccchhhcccccccceeehhhceeccccccceeeeeccccccccccc-----ccccceEEEEEEhhhhhhccc-ccchh
Confidence            344567999999999999999999999999999999999999999964     378899999999999999888 78999


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceeccCCCc---
Q psy11602         95 MLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQTKQK---  171 (1083)
Q Consensus        95 ~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~~~~~---  171 (1083)
                      .+++++.++..+++.+++.+.++..+.....+.....++.+.|++..+++.|++||+||++++|+||+|+|.+.+|.   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ev~t~~~l~~~~s~r~~i~Y~d~dg~~~~  249 (272)
T d1hc7a2         170 EVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKY  249 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEE
T ss_pred             HHHHHHHHHHHHHHHhcchhhhcCcccccccccccceeccccccccCCCCEEcccceecccccchhcCCEEECCCCCEEE
Confidence            99999999999998777777777777776666666667777777779999999999999999999999999998876   


Q ss_pred             --cccccccchhheeheeccccCC
Q psy11602        172 --IYATACATTRVICAILETHQTE  193 (1083)
Q Consensus       172 --~n~tg~a~~Rli~Alle~~~~~  193 (1083)
                        ++++|++ +|+|+||||+|+|+
T Consensus       250 vH~~~~G~~-eR~i~allE~h~d~  272 (272)
T d1hc7a2         250 VHTTSWGLS-WRFIGAIIMTHGDD  272 (272)
T ss_dssp             CEEEEEEEE-THHHHHHHHHHCBT
T ss_pred             EEEccccHH-HHHHHHHHHHhCCC
Confidence              6677777 79999999999885

>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.91  E-value=3.4e-26  Score=251.69  Aligned_cols=179  Identities=15%  Similarity=0.141  Sum_probs=147.3

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      +..+++++|+||+|++++.+++++++||++||+|+||+++|||+|+++   .++||+|+|||+|+|+|+|+.++  ++++
T Consensus        82 ~~~~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~---~~~Gl~Rvr~F~~~d~~~f~~~e--q~~~  156 (291)
T d1nyra4          82 LDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASG---AVSGLQRVRGMTLNDSHIFVRPD--QIKE  156 (291)
T ss_dssp             ETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTT---TCBTTTBCSEEEEEEEEEEECGG--GHHH
T ss_pred             ccccccccccccchhHHHHhhhcEeccccccceEEeeccceeecCCCc---ccccccceeeeeeeeheeecCCc--ccHH
Confidence            345678999999999999999999999999999999999999999953   57899999999999999999876  4888


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCC--------chhhhhcccceec
Q psy11602         95 MLDEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC--------LDYQSRRLLVRYG  166 (1083)
Q Consensus        95 ~~~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~c--------gdyqs~rl~i~y~  166 (1083)
                      .++++++.+++||++|||||+++.+++++++.++.+.+|+|+|+|+...+.++..++++        +.|++.+.++.+.
T Consensus       157 e~~~~~~~~~~i~~~lGl~~~~v~~~~~d~~~~~~~~~d~e~w~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~k~d~~~~  236 (291)
T d1nyra4         157 EFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVK  236 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEEC
T ss_pred             HHHHHHHHHHHHhhhcCcCceEEEEecCCCCChhheeechHHhhHHHHHHHHHHHhcCCcceeeecccceeccccceeec
Confidence            89999999999999999999999999999999999999999999988776666665555        6778888888877


Q ss_pred             cCCCc------cccccccchhheeheeccccCCCe-eEecccc
Q psy11602        167 QTKQK------IYATACATTRVICAILETHQTETG-VRIPDCL  202 (1083)
Q Consensus       167 ~~~~~------~n~tg~a~~Rli~Alle~~~~~~G-i~lP~~L  202 (1083)
                      +..|.      ++.......|+-    -+|++++| ...|-.|
T Consensus       237 d~~gr~~q~~Tiq~df~~~~rf~----l~Y~~~dG~~~~Pvmi  275 (291)
T d1nyra4         237 TAMGKEETLSTAQLDFLLPERFD----LTYIGQDGEHHRPVVI  275 (291)
T ss_dssp             CTTSCCEEEEEEEEESSHHHHTT----CCEECTTSCEECCEEE
T ss_pred             CCCCCeEEEEEEeehhcchhhcC----CEEECCCCCCcCCEEE
Confidence            75443      222233334532    26777777 4444433

>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5e-25  Score=242.29  Aligned_cols=168  Identities=15%  Similarity=0.196  Sum_probs=138.7

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .+++++|+||+|++++.+++++++||++||+++||+++|||+|.+   ..++||+|+|||+|+|+|+|+.+++  +.+.+
T Consensus        82 ~~~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~---~~~~Gl~R~reF~~~d~h~f~~~e~--~~~e~  156 (291)
T d1qf6a4          82 ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS---GSLHGLMRVRGFTQDDAHIFCTEEQ--IRDEV  156 (291)
T ss_dssp             TTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG---GGCBTTTBCSEEEEEEEEEEECGGG--HHHHH
T ss_pred             cchhhcccccCcHHHHHHHHccccchhhcCeeEeecceeeecccc---cccccccccccceeccceeEecchh--hHHHH
Confidence            456899999999999999999999999999999999999999985   3578999999999999999999873  55667


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeccCCCCcccce---------------------------------eEeEEEEecCCCc
Q psy11602         97 DEMIQNSEEFYADLGIAYRVVNIVSGALNHAAAK---------------------------------KLDLEAWFPGSGA  143 (1083)
Q Consensus        97 ~~~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~---------------------------------~~diE~~~P~~~~  143 (1083)
                      .+++++|.+||+.|||++++|.++++..++..++                                 ++|+.+... .++
T Consensus       157 ~~~~~~~~~i~~~lGl~~~~v~~s~~~~~~~~~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~k~~~~~~~~-~gr  235 (291)
T d1qf6a4         157 NGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDC-LDR  235 (291)
T ss_dssp             HHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECT-TCC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceeccccccccccccccccccc-CCC
Confidence            7899999999999999999999999877665444                                 334545444 445


Q ss_pred             eeEEEEcCCCchhhhhcccceeccCCCc------cc-cccccchhheeheecccc
Q psy11602        144 FRELVSCSNCLDYQSRRLLVRYGQTKQK------IY-ATACATTRVICAILETHQ  191 (1083)
Q Consensus       144 ~~ev~s~s~cgdyqs~rl~i~y~~~~~~------~n-~tg~a~~Rli~Alle~~~  191 (1083)
                      -.+++++ ..+...|+||+|+|.+.+|.      ++ +...+++|+|++|||+|.
T Consensus       236 ~~~~~ti-qld~~~~~rf~~~y~~~dg~~~~pvmiHra~~GsieR~ia~LiE~~~  289 (291)
T d1qf6a4         236 AWQCGTV-QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFA  289 (291)
T ss_dssp             EEEEEEE-EEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred             eEEecee-EEeccchhhhCCEEECCCCCCcCCEEEEcCCCCcHHHHHHHHHHhhC
Confidence            5677776 45656699999999988875      23 332268999999999874

>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.90  E-value=9e-26  Score=248.26  Aligned_cols=231  Identities=14%  Similarity=0.147  Sum_probs=191.3

Q ss_pred             CeeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEE
Q psy11602        194 TGVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQ  273 (1083)
Q Consensus       194 ~Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~  273 (1083)
                      .|++|-.+|..|+.+.+. ..||.+|.+|.+++.+..                ...++.+.+.+   .+|.+...+.-++
T Consensus        28 ~G~~l~~~L~~~~~~~~~-~~G~~eV~~P~l~~~~l~----------------~~sG~~~~~~~---~~~~~~~~~~~~~   87 (291)
T d1nyra4          28 NGATIRREIERYIVDKEV-SMGYDHVYTPVLANVDLY----------------KTSGHWDHYQE---DMFPPMQLDETES   87 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTEEECBCCSEEETHHH----------------HHHTHHHHCTT---SSCCCEEETTTEE
T ss_pred             hHHHHHHHHHHHHHHHHH-HcCCEEEECccccchhHh----------------hhhcccccccc---ceEEEeecccccc
Confidence            456666899999999885 899999999999995444                44455666666   4665554333333


Q ss_pred             EEeeCC----------CCCcchhhhh-hhhcccccccc--cccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHH
Q psy11602        274 FVLTSP----------HDDESWKMLD-EMIQNSEEFYA--DLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNS  340 (1083)
Q Consensus       274 ~~~~~~----------~~~~s~~~~~-~~~~~~~~~~~--~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~  340 (1083)
                      +.+..-          ..-.||++|| ++++.+.|||.  +..++||+|||||+|+|++.||+|  +++++.++++++.+
T Consensus        88 ~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~--eq~~~e~~~~~~~~  165 (291)
T d1nyra4          88 MVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRP--DQIKEEFKRVVNMI  165 (291)
T ss_dssp             EEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHhhhcEeccccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCC--cccHHHHHHHHHHH
Confidence            333221          1345899999 99999999998  456789999999999999999998  68999999999999


Q ss_pred             HHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCc--------ccccccccceEEecccCCCCce
Q psy11602        341 EEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNC--------LAYQSRRLLVRYGQTKKMNEKI  412 (1083)
Q Consensus       341 e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~--------~d~qarrl~iry~~~~~~~~~~  412 (1083)
                      +++|+.||||||+|.++++|+++++.+++|+|+|+|+.+.++++++++|+        +.|++.++++++++.   .|+.
T Consensus       166 ~~i~~~lGl~~~~v~~~~~d~~~~~~~~~d~e~w~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~k~d~~~~d~---~gr~  242 (291)
T d1nyra4         166 IDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTA---MGKE  242 (291)
T ss_dssp             HHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCT---TSCC
T ss_pred             HHHhhhcCcCceEEEEecCCCCChhheeechHHhhHHHHHHHHHHHhcCCcceeeecccceeccccceeecCC---CCCe
Confidence            99999999999999999999999999999999999999999999999887        699999999999875   4667


Q ss_pred             eeEEeecccccchhHHHHHHHhhccCCCc-eecCccc-cccCC
Q psy11602        413 EFVHMLNATACATTRVICAILETHQTETG-VRIPDCL-RKFVP  453 (1083)
Q Consensus       413 ~~~htln~t~~a~~R~i~ailEn~q~~~G-i~iP~~L-~py~~  453 (1083)
                      ..+||+|....+..|+-+    +|+++|| +..|-.| |..+|
T Consensus       243 ~q~~Tiq~df~~~~rf~l----~Y~~~dG~~~~PvmiHra~~G  281 (291)
T d1nyra4         243 ETLSTAQLDFLLPERFDL----TYIGQDGEHHRPVVIHRGVVS  281 (291)
T ss_dssp             EEEEEEEEESSHHHHTTC----CEECTTSCEECCEEEEEEEEE
T ss_pred             EEEEEEeehhcchhhcCC----EEECCCCCCcCCEEEeCCCcc
Confidence            889999998888778543    8999999 8888777 55554

>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=99.89  E-value=3.4e-24  Score=232.62  Aligned_cols=219  Identities=16%  Similarity=0.236  Sum_probs=173.7

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--cceE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--EKVE  272 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d~~~  272 (1083)
                      |.+|-.+|..++...+  .+||.+|..|.++..+..-               .-.++...+++   .+|++...  ++.+
T Consensus        32 G~~i~~~i~~~~~~~~--~~G~~ev~~P~l~~~~~l~---------------~~sgh~~~~~~---e~f~~~~~~~~~~~   91 (265)
T d1nj1a3          32 GFMIRKNTLKILRRIL--DRDHEEVLFPLLVPEDELA---------------KEAIHVKGFED---EVYWVTHGGLSKLQ   91 (265)
T ss_dssp             HHHHHHHHHHHHHHHH--TTTCEECCCCSEEEHHHHT---------------TSHHHHHHTTT---TCCEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHH--HhcCceehhhhhhhhhhhh---------------hcccccccccc---cceeeeccCccccc
Confidence            3444456666654333  5799999999998743221               11233333444   45665432  2323


Q ss_pred             EEEeeCCCC-----------Ccchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602        273 QFVLTSPHD-----------DESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       273 ~~~~~~~~~-----------~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~  339 (1083)
                      +--...|..           --||++|| ++++.+.|||+. +.++||+|+|+|+++|..+++.++.+++++.++.+++.
T Consensus        92 ~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~~  171 (265)
T d1nj1a3          92 RKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI  171 (265)
T ss_dssp             EEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             eeEEeecccccceEEeeeeeeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhHHH
Confidence            322333311           23899999 999999999995 55799999999999999999999989999999999999


Q ss_pred             HHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeec
Q psy11602        340 SEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN  419 (1083)
Q Consensus       340 ~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln  419 (1083)
                      ++++++.|+|||+++..+++|++..+.+++|+|+|+|. +.+.|+++++|++|+||+|++|+|.+.   +++.+++|+ |
T Consensus       172 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~e~~~~~~lg~~~s~~f~i~y~d~---~g~~~~~h~-~  246 (265)
T d1nj1a3         172 YKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETP---EGDHEYVHQ-T  246 (265)
T ss_dssp             HHHHHHHHTCCCEEEECCTTTSCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEE-E
T ss_pred             HHHHHhhcCCceeEEEccCcccccccccccchhhcccc-cccceecchhhcchhhHHhcCCEEECC---CCCEEEEEE-e
Confidence            99999999999999999999999999999999999994 889999999999999999999999976   567889998 5


Q ss_pred             ccccchhHHHHHHHhhccCC
Q psy11602        420 ATACATTRVICAILETHQTE  439 (1083)
Q Consensus       420 ~t~~a~~R~i~ailEn~q~~  439 (1083)
                      ..|+. +|+|+||||+|.++
T Consensus       247 ~~G~~-eR~i~~llE~~~dd  265 (265)
T d1nj1a3         247 CYGLS-DRVIASVIAIHGDE  265 (265)
T ss_dssp             EEEEC-THHHHHHHHHTCCS
T ss_pred             cccHH-HHHHHHHHHHhCCC
Confidence            77776 79999999999875

>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=99.88  E-value=3.5e-23  Score=225.17  Aligned_cols=220  Identities=16%  Similarity=0.220  Sum_probs=175.2

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeec--cceE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQF--EKVE  272 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qf--d~~~  272 (1083)
                      |.+|-.+|..++.+.+. ..||.+|..|.++..+...+.+               +......+   .++.+-..  ++-.
T Consensus        34 G~~i~~~i~~~i~~~~~-~~G~~ev~~P~l~~~~l~~ks~---------------~~~~~~~~---~~~~~~~~~~~~~~   94 (268)
T d1nj8a3          34 GFKIRRYTFEIIRNLLD-ESGHDEALFPMLIPEDLLAKEA---------------EHIKGFED---EVYWVTHGGKTQLD   94 (268)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCEECBCCSEEEHHHHHHHC---------------SSSGGGGG---GCEEEEESSSSEEE
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCeEEeehhhhhhHhhhccC---------------CCcccccc---ceeEEeccccccch
Confidence            44455677777766664 7899999999999966664443               11111122   12222111  1111


Q ss_pred             EEEeeCCC-----------CCcchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHH
Q psy11602        273 QFVLTSPH-----------DDESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQN  339 (1083)
Q Consensus       273 ~~~~~~~~-----------~~~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~  339 (1083)
                      +--+..|.           ..-|+++|| ++++...|||+. +.+.||+|+|||.+++.++++.++++++++.+++|+..
T Consensus        95 ~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~  174 (268)
T d1nj8a3          95 VKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISI  174 (268)
T ss_dssp             EEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHHH
Confidence            11122221           134899999 999999999996 66799999999999999999988888999999999999


Q ss_pred             HHHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeec
Q psy11602        340 SEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLN  419 (1083)
Q Consensus       340 ~e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln  419 (1083)
                      +++|++.|+|||+++..+++|++..+.+++|+++|+| .+++.|++++++++|++|+|++|+|.+.   +++.+++|+ |
T Consensus       175 y~~if~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~e~~t~~~lg~~~s~~f~l~y~~~---dg~~~~~h~-~  249 (268)
T d1nj8a3         175 YKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIFETP---TGDKDYAYQ-T  249 (268)
T ss_dssp             HHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECT-TSCEEEEEEEEEEETHHHHHTTCEEECT---TSSEEECEE-E
T ss_pred             HHHHHHhcCcceeeccccccccccchhcccchhhhhh-ccccEEEeeecccCCCcChhcCCEEECC---CCCCcceee-c
Confidence            9999999999999999999999999999999999999 7899999999999999999999999976   677889998 6


Q ss_pred             ccccchhHHHHHHHhhccCC
Q psy11602        420 ATACATTRVICAILETHQTE  439 (1083)
Q Consensus       420 ~t~~a~~R~i~ailEn~q~~  439 (1083)
                      .+|+. +|+|+||||+|.++
T Consensus       250 ~~G~~-eR~ia~liE~h~D~  268 (268)
T d1nj8a3         250 CYGIS-DRVIASIIAIHGDE  268 (268)
T ss_dssp             EEEEC-THHHHHHHHHHCBT
T ss_pred             cCcHH-HHHHHHHHHHhCCC
Confidence            78877 89999999999875

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=2.8e-21  Score=209.22  Aligned_cols=220  Identities=14%  Similarity=0.096  Sum_probs=165.8

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeecc-ce-E
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFE-KV-E  272 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd-~~-~  272 (1083)
                      |.+|-.+|..|+.+.+. ..||.+|..|+++..+..                ...+....+..+  .+++..... .. .
T Consensus        39 G~~l~~~l~~~~~~~~~-~~G~~eV~~P~l~~~~l~----------------~~sg~~~~~~~~--~m~~~~~~~~~~~~   99 (272)
T d1hc7a2          39 GYAIWENIQQVLDRMFK-ETGHQNAYFPLFIPMSFL----------------RKEAEHVEGFSP--ELAVVTHAGGEELE   99 (272)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCEECBCCSEEESTTC-------------------------CCT--TCEEEEEESSSEEE
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCeEEeeccccchHHh----------------hhcccchhhccc--ceeeeecccccccc
Confidence            45555788888888774 899999999999994443                233322222221  345443221 11 1


Q ss_pred             EEEeeCCC-----------CCcchhhhh-hhhcccccccccccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHH
Q psy11602        273 QFVLTSPH-----------DDESWKMLD-EMIQNSEEFYADLDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNS  340 (1083)
Q Consensus       273 ~~~~~~~~-----------~~~s~~~~~-~~~~~~~~~~~~~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~  340 (1083)
                      .--+..|.           ..-|+++|| ++++.+.|||+.+..+|+.|+++|...+...++... ++++..+++++...
T Consensus       100 ~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  178 (272)
T d1hc7a2         100 EPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATR-EEAEEEVRRMLSIY  178 (272)
T ss_dssp             EEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSH-HHHHHHHHHHHHHH
T ss_pred             chhhcccccccceeehhhceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhccc-ccchhHHHHHHHHH
Confidence            11222231           123899999 999999999998888898888888877666665443 67888899999999


Q ss_pred             HHHHHHhCCcEEEEeccCCCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccceEEecccCCCCceeeEEeecc
Q psy11602        341 EEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLLVRYGQTKKMNEKIEFVHMLNA  420 (1083)
Q Consensus       341 e~~~~~L~lpyRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~iry~~~~~~~~~~~~~htln~  420 (1083)
                      ..++..+.+.+.++.+++.+....++.+++.++|+|+.+++.||+||+||+|+||+|++|+|.+.   +++.+++|| |.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ev~t~~~l~~~~s~r~~i~Y~d~---dg~~~~vH~-~~  254 (272)
T d1hc7a2         179 ARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDR---DLQVKYVHT-TS  254 (272)
T ss_dssp             HHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECT---TSCEEECEE-EE
T ss_pred             HHHHHHhcchhhhcCcccccccccccceeccccccccCCCCEEcccceecccccchhcCCEEECC---CCCEEEEEE-cc
Confidence            99998888888888888888888888888888999999999999999999999999999999976   567889998 67


Q ss_pred             cccchhHHHHHHHhhccCC
Q psy11602        421 TACATTRVICAILETHQTE  439 (1083)
Q Consensus       421 t~~a~~R~i~ailEn~q~~  439 (1083)
                      +|+. +|+|+||||||.++
T Consensus       255 ~G~~-eR~i~allE~h~d~  272 (272)
T d1hc7a2         255 WGLS-WRFIGAIIMTHGDD  272 (272)
T ss_dssp             EEEE-THHHHHHHHHHCBT
T ss_pred             ccHH-HHHHHHHHHHhCCC
Confidence            7766 79999999999764

>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=5.7e-19  Score=193.46  Aligned_cols=166  Identities=13%  Similarity=0.074  Sum_probs=128.0

Q ss_pred             CeeEec-CChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         20 DKYLIA-TSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        20 ~~~L~p-TsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ..+|+| |+.-.++.+......++++||++++|+++|||.|.. ...+.+||+|+|||++.|+..|+.|+  +++++++.
T Consensus       112 ~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~-~~~~~~gl~RvReF~q~E~~~F~~pe--~~~~~~~~  188 (290)
T d1g5ha2         112 SGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSN-SNQTPSSVTRVGEKTEASLVWFTPTR--TSSQWLDF  188 (290)
T ss_dssp             SCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHH--HHHHHHHH
T ss_pred             cceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccc-cCCcccccceeeEeEeeeeEEEeCCc--chHHHHHH
Confidence            469999 666555555444568999999999999999999884 34567899999999999999999986  49999999


Q ss_pred             HHHHHHHHHHHcCCceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhccc----ceeccCCCc---
Q psy11602         99 MIQNSEEFYADLGIAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLL----VRYGQTKQK---  171 (1083)
Q Consensus        99 ~~~~y~~if~~LgLpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~----i~y~~~~~~---  171 (1083)
                      ++.....+++.|||++..+.....+.. -+.+.+|+|+++|  .+|.|+.++++|+||+.++..    .+|.+.++.   
T Consensus       189 ~~~~~~~~~~~lGi~~~~~~~~~~~~~-~a~~~~die~~~p--~g~~Ei~g~~~r~D~dl~~~~~~~~l~y~~~d~~~k~  265 (290)
T d1g5ha2         189 WLRHRLLWWRKFAMSPSNFSSADCQDE-LGRKGSKLYYSFP--WGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNV  265 (290)
T ss_dssp             HHHHHHHHHHTTCSSGGGEEEEEEECT-TSCEEEEEEEEET--TEEEEEEEEEEEESHHHHHHSTTCGGGSCEEETTEEE
T ss_pred             HHHHHHHHHHHcCCChhheeecccchh-hcccceeeEEcCC--CCEEEEEEecCChhhhhhhcccccCCEEEccCCCeeE
Confidence            999999999999999999998888754 3556677777776  589999999999999988754    555543331   


Q ss_pred             ---cccccccchhheehee-cccc
Q psy11602        172 ---IYATACATTRVICAIL-ETHQ  191 (1083)
Q Consensus       172 ---~n~tg~a~~Rli~All-e~~~  191 (1083)
                         |..++++++|++.|+| ++|+
T Consensus       266 vP~vIe~s~gldR~~lAiL~e~Y~  289 (290)
T d1g5ha2         266 VPCVLSVSGDVDLGTLAYLYDSFQ  289 (290)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHHEE
T ss_pred             eeEEEeCccchHHHHHHHHHHHhC
Confidence               5667789999766655 7764

>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.5e-18  Score=190.16  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=116.5

Q ss_pred             chhhhh-hhhcccccccc---cc-cCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCcEEEEeccC
Q psy11602        284 SWKMLD-EMIQNSEEFYA---DL-DTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIAYRVVNIVS  358 (1083)
Q Consensus       284 s~~~~~-~~~~~~~~~~~---~~-~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lpyRvv~~~~  358 (1083)
                      +++.|| .|.+...|||.   +. ..+||+|||||+++|++.+|+|  +++.++|+.++..++++|+.|||+++.+.+..
T Consensus       134 ~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~p--e~~~~~~~~~~~~~~~~~~~lGi~~~~~~~~~  211 (290)
T d1g5ha2         134 VNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPT--RTSSQWLDFWLRHRLLWWRKFAMSPSNFSSAD  211 (290)
T ss_dssp             TTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECH--HHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEE
T ss_pred             ccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCC--cchHHHHHHHHHHHHHHHHHcCCChhheeecc
Confidence            566788 77788889994   32 3389999999999999999999  78999999999999999999999999999999


Q ss_pred             CCcchhhhceeeEEEeeCCCCcEEeeecccCcccccccccc----eEEecccCCCCceeeEEeecccccchhHHHHHHH-
Q psy11602        359 GALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLAYQSRRLL----VRYGQTKKMNEKIEFVHMLNATACATTRVICAIL-  433 (1083)
Q Consensus       359 ~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d~qarrl~----iry~~~~~~~~~~~~~htln~t~~a~~R~i~ail-  433 (1083)
                      .+... |.++.|+|+|+|  ..|.|+.+++||+|||.+++.    ++|.+.   +++.+|++.++.+++++.|++.||| 
T Consensus       212 ~~~~~-a~~~~die~~~p--~g~~Ei~g~~~r~D~dl~~~~~~~~l~y~~~---d~~~k~vP~vIe~s~gldR~~lAiL~  285 (290)
T d1g5ha2         212 CQDEL-GRKGSKLYYSFP--WGKEPIETLWNLGDQELLHTYPGNVSTIQGR---DGRKNVVPCVLSVSGDVDLGTLAYLY  285 (290)
T ss_dssp             EECTT-SCEEEEEEEEET--TEEEEEEEEEEEESHHHHHHSTTCGGGSCEE---ETTEEECCEEEEEEEEHHHHHHHHHH
T ss_pred             cchhh-cccceeeEEcCC--CCEEEEEEecCChhhhhhhcccccCCEEEcc---CCCeeEeeEEEeCccchHHHHHHHHH
Confidence            88654 455666666666  689999999999999998864    556554   4456776556678899999887766 


Q ss_pred             hhcc
Q psy11602        434 ETHQ  437 (1083)
Q Consensus       434 En~q  437 (1083)
                      |+||
T Consensus       286 e~Y~  289 (290)
T d1g5ha2         286 DSFQ  289 (290)
T ss_dssp             HHEE
T ss_pred             HHhC
Confidence            8887

>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.5e-17  Score=177.69  Aligned_cols=210  Identities=15%  Similarity=0.197  Sum_probs=156.5

Q ss_pred             eeEecccccccccccccCCCCccccccCcccchHHHHHHhhhhcccchhhhhhhhhccccccccccCceEeeeccceEEE
Q psy11602        195 GVRIPDCLRKFVPAVYLNEAGEIPFVKTAPIDEEETKKQKKQKEGMKKKLTMSLFSQVGSHGRDTRGIFRVHQFEKVEQF  274 (1083)
Q Consensus       195 Gi~lP~~L~p~~~~~~~~~~G~~pv~~P~~i~~d~~~~~~~k~~~~k~~~~~~~~~e~g~h~~dl~~i~Rv~qfd~~~~~  274 (1083)
                      |.+|-.+|..|+.+.+. ..||.+|..|.+++.+..++.                ++.+.+.+   +++++...+  +.+
T Consensus        29 G~~l~~~L~~~i~e~~~-~~G~~eV~~P~L~~~~l~~~s----------------G~~~~~~~---~~~~~~~~~--~~~   86 (291)
T d1qf6a4          29 GWTIFRELEVFVRSKLK-EYQYQEVKGPFMMDRVLWEKT----------------GHWDNYKD---AMFTTSSEN--REY   86 (291)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCEECCCCSEEETHHHHHH----------------SHHHHHGG---GCEEEEETT--EEE
T ss_pred             HHHHHHHHHHHHHHHHH-HcCCEEEEcccccchhHHhhh----------------chhhhccc---hhccccccc--hhh
Confidence            55556789999988884 899999999999995555443                44555555   466655443  222


Q ss_pred             EeeC----------CCCCcchhhhh-hhhccccccccc--ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHH
Q psy11602        275 VLTS----------PHDDESWKMLD-EMIQNSEEFYAD--LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSE  341 (1083)
Q Consensus       275 ~~~~----------~~~~~s~~~~~-~~~~~~~~~~~~--~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e  341 (1083)
                      .+-.          -..-.||++|| ++++...|||..  .+++||+|+|||++.|++.+|.+  +++.+.+++++..+.
T Consensus        87 ~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~--e~~~~e~~~~~~~~~  164 (291)
T d1qf6a4          87 CIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE--EQIRDEVNGCIRLVY  164 (291)
T ss_dssp             EECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHHHH
T ss_pred             cccccCcHHHHHHHHccccchhhcCeeEeecceeeecccccccccccccccceeccceeEecc--hhhHHHHHHHHHHHH
Confidence            2211          11234999999 999999999984  46889999999999999999998  577888999999999


Q ss_pred             HHHHHhCCcEEEEeccCCCcchh-------------------------------h--hceeeEEEeeCCCCcEEeeeccc
Q psy11602        342 EFYADLGIAYRVVNIVSGALNHA-------------------------------A--AKKLDLEAWFPGSGAFRELVSCS  388 (1083)
Q Consensus       342 ~~~~~L~lpyRvv~~~~~dl~~~-------------------------------a--~~~~DiE~w~P~~~~y~Ev~S~s  388 (1083)
                      ++|+.|||||++|.+++++.+..                               |  ..++|+.+... .++-.+++.+ 
T Consensus       165 ~i~~~lGl~~~~v~~s~~~~~~~~~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~k~~~~~~~~-~gr~~~~~ti-  242 (291)
T d1qf6a4         165 DMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDC-LDRAWQCGTV-  242 (291)
T ss_dssp             HHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECT-TCCEEEEEEE-
T ss_pred             HHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceeccccccccccccccccccc-CCCeEEecee-
Confidence            99999999999999988753321                               1  14566666665 5555666665 


Q ss_pred             Cccccc-ccccceEEecccCCCCceee---EE-eecccccchhHHHHHHHhhcc
Q psy11602        389 NCLAYQ-SRRLLVRYGQTKKMNEKIEF---VH-MLNATACATTRVICAILETHQ  437 (1083)
Q Consensus       389 n~~d~q-arrl~iry~~~~~~~~~~~~---~h-tln~t~~a~~R~i~ailEn~q  437 (1083)
                      . .||+ ++|++|+|.++   +++.+.   +| +++|+   ++|+|+||||+|.
T Consensus       243 q-ld~~~~~rf~~~y~~~---dg~~~~pvmiHra~~Gs---ieR~ia~LiE~~~  289 (291)
T d1qf6a4         243 Q-LDFSLPSRLSASYVGE---DNERKVPVMIHRAILGS---MERFIGILTEEFA  289 (291)
T ss_dssp             E-EESSHHHHTTCCEECT---TSCEECCEEEEEEEEEE---HHHHHHHHHHHHT
T ss_pred             E-EeccchhhhCCEEECC---CCCCcCCEEEEcCCCCc---HHHHHHHHHHhhC
Confidence            2 4555 99999999987   445544   34 56675   8999999999984

>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=8.8e-14  Score=154.69  Aligned_cols=131  Identities=17%  Similarity=0.099  Sum_probs=103.3

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESW   93 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~   93 (1083)
                      +++.+..+.+.||++..++.+++....||++||++++|++++||+|+    +++.||+|+|||+|.|+++|+.++ ...+
T Consensus       114 ~~~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~----s~~~gl~RvReFtq~D~~~F~~~~-q~~~  188 (331)
T d1b76a2         114 GGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEI----TPRNFIFRVREFEQMEIEYFVRPG-EDEY  188 (331)
T ss_dssp             CCGGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCS----SCCTTTTSCSEEEEEEEEEEECGG-GHHH
T ss_pred             cccCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceecccc----cccccccccchhhhhhhhhhcCCc-chhH
Confidence            34556678888999999999999999999999999999999999999    456799999999999999999998 4555


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEE--EeccCCCCcccceeEeEEEEecCCCceeEEEEcC
Q psy11602         94 KMLDEMIQNSEEFYADLGIAYRVV--NIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCS  151 (1083)
Q Consensus        94 ~~~~~~~~~y~~if~~LgLpyrvv--~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s  151 (1083)
                      +.+..+..+|+.+++....++++.  +...+++...+...+|+|.-.|  -++.|+..+.
T Consensus       189 ~~~~~~~~~~~~~~~~g~~~~~lr~~~~~~~e~a~~~~~~~~~e~~~~--~g~~e~eg~~  246 (331)
T d1b76a2         189 WHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFP--HGSLELEGIA  246 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGEEEEECCTTSSCTTEEEEEEEEEEET--TEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhccchheeeeeeccchhhhhhHHHHHHHhcCC--Cccccchhhh
Confidence            555555566666666555575554  4456778888888899998776  3445555443

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.3e-10  Score=88.68  Aligned_cols=43  Identities=28%  Similarity=0.723  Sum_probs=39.9

Q ss_pred             ccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1039 KCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1039 ~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .|.+|++.++++.|++||.|+.+||+.||+||++.+|++.|.+
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C   44 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQC   44 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEEC
Confidence            5899999999999999999999999999999999999988543

>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=3.8e-08  Score=109.43  Aligned_cols=130  Identities=19%  Similarity=0.273  Sum_probs=111.2

Q ss_pred             CeeEecCChHHHHHHHhccc-CCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHH
Q psy11602         20 DKYLIATSEQPICAVHRDSW-LPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDE   98 (1083)
Q Consensus        20 ~~~L~pTsE~~i~~l~~~~i-~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~   98 (1083)
                      ..||+|--=+.|---|.+.. ..-..||.-++||+.+||+|+    .++.||+|+|||++.|+=.|+.|..  ..++++.
T Consensus       182 ~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEI----sPr~~l~R~REF~q~EiE~Fv~P~~--~~~~~~y  255 (394)
T d1atia2         182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEI----TPRNFIFRVREFEQMEIEYFVRPGE--DEYWHRY  255 (394)
T ss_dssp             EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCS----SCCTGGGSCSEEEEEEEEEEECGGG--HHHHHHH
T ss_pred             eeEEChhhhhHHHHHHHHHHHHcccCCCceeeeecccccccc----CcccCCcccccceeeeeEEEEeCCc--chHHHHH
Confidence            56999965555555554433 466889999999999999999    5667999999999999999999985  7788888


Q ss_pred             HHHHHHHHHHHcCCc---eEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhh
Q psy11602         99 MIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQ  157 (1083)
Q Consensus        99 ~~~~y~~if~~LgLp---yrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyq  157 (1083)
                      .+..-..++.+|||+   +|.-+-...+|-.-|..++|+|+-+|  -+|.|+.-+.+=+||-
T Consensus       256 w~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp--~Gw~El~GiA~RtdyD  315 (394)
T d1atia2         256 WVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFP--HGSLELEGIAQRTDFD  315 (394)
T ss_dssp             HHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEET--TEEEEEEEEEECTTHH
T ss_pred             HHHHHHHHHHHhcCCccceeEEeecchhhhhcccceEEEEEecC--CCcEechhhhccchhh
Confidence            888888999999997   78888899999999999999999998  4899999888888775

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.3e-08  Score=84.01  Aligned_cols=44  Identities=25%  Similarity=0.622  Sum_probs=38.1

Q ss_pred             ccccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1035 VLSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1035 ~~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ..+..|.+|++.++   |+.||.|+.+||+.|+.|||+.+|++.|.+
T Consensus         5 d~c~~C~~C~~~~~---ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C   48 (70)
T d1fp0a1           5 DSATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSC   48 (70)
T ss_dssp             SSSSCCSSSCSSSC---CEECTTSSCEECTTSSSTTCCCCCSSSCCC
T ss_pred             CCCCCCCCCCCcCE---EEECCCCChhhccccCCCCcCcCCCCCEEC
Confidence            35677888887654   999999999999999999999999998655

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=7.5e-07  Score=73.97  Aligned_cols=43  Identities=35%  Similarity=0.753  Sum_probs=36.8

Q ss_pred             cccccccccCCCCCCcceecCccCCCccccCCCCCCCCCCCCCcCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      ....|.+|++.+   .|+.||.|+.+||+.||+||++.+|++.|.+
T Consensus         8 ~~~~C~~C~~~g---~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C   50 (61)
T d1mm2a_           8 HMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLC   50 (61)
T ss_dssp             SCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCC
T ss_pred             CcCCCcCCCCCC---eEEEeCCCCccCchhhcCCCcCcCCCCcEEC
Confidence            345699998755   4999999999999999999999999988544

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.4e-07  Score=71.64  Aligned_cols=49  Identities=22%  Similarity=0.609  Sum_probs=40.5

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .|.||...  ++.+.||.|+.|...||..|+.+.....        |.+.|+|..|+..
T Consensus         2 ~C~vC~~~--~~~~~~i~Cd~C~~~~H~~C~~p~~~~~--------p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEV--------PDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSC--------CSSCCSCTTTSCC
T ss_pred             CCcCcCCC--CCCCCEEEcCCCCCCCCCCCCCCCCCcC--------CCCCEECcCCcCc
Confidence            79999854  4577899999999999999999865432        6789999999754

>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.98  E-value=1.4e-05  Score=88.59  Aligned_cols=125  Identities=18%  Similarity=0.222  Sum_probs=105.1

Q ss_pred             cCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCCc---EEEEeccCCCcchhhhceeeEEEeeCCCCcE
Q psy11602        305 RGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGIA---YRVVNIVSGALNHAAAKKLDLEAWFPGSGAF  381 (1083)
Q Consensus       305 rGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~lp---yRvv~~~~~dl~~~a~~~~DiE~w~P~~~~y  381 (1083)
                      .||||+++|+..|+-.|++|  +++.++|+..+...-.+|.+|||+   +|.-.-...+|..=|..++|||.=+|-  .|
T Consensus       227 ~~l~R~REF~q~EiE~Fv~P--~~~~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~--Gw  302 (394)
T d1atia2         227 NFIFRVREFEQMEIEYFVRP--GEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPH--GS  302 (394)
T ss_dssp             TGGGSCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETT--EE
T ss_pred             cCCcccccceeeeeEEEEeC--CcchHHHHHHHHHHHHHHHHhcCCccceeEEeecchhhhhcccceEEEEEecCC--Cc
Confidence            59999999999999999999  578889999999999999999997   899999999999999999999999994  79


Q ss_pred             EeeecccCccccccc---------------------ccceEEecccCCCCceeeEEeecccccchhHHHHHHHhhc
Q psy11602        382 RELVSCSNCLAYQSR---------------------RLLVRYGQTKKMNEKIEFVHMLNATACATTRVICAILETH  436 (1083)
Q Consensus       382 ~Ev~S~sn~~d~qar---------------------rl~iry~~~~~~~~~~~~~htln~t~~a~~R~i~ailEn~  436 (1083)
                      .|+.-+++=+||-=.                     --++.|.+..  .++.-.+|.+ =....+.|+|.|+|+.-
T Consensus       303 ~El~GiA~RtdyDL~~H~k~~~~~~~~~~~~~~~~s~~~l~~~d~~--~~~~~iPhVI-EPS~GldR~~la~L~~a  375 (394)
T d1atia2         303 LELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPE--TGKWFVPYVI-EPSAGVDRGVLALLAEA  375 (394)
T ss_dssp             EEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSCCCEECSS--SCCEECCEEE-EEEEEHHHHHHHHHHHH
T ss_pred             EechhhhccchhhHHHHhhhccccchhhhhhcCCCccceeEEEccC--CCcEEeeeEE-EcCCCccHHHHHHHHHH
Confidence            999999998887311                     1224455432  3455677888 66778999999999854

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.4e-06  Score=77.46  Aligned_cols=57  Identities=28%  Similarity=0.567  Sum_probs=44.1

Q ss_pred             CccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .+.|.||......+.+.||+|+.|...||..|+++.....    ....+.+.|+|..|...
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~----~~~~~~~~W~C~~C~~~   72 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDK----EVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHH----HHHCTTCCCCCHHHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCccccc----ccccCCCeEECcccCch
Confidence            4589999987777788999999999999999999754211    01125678999999753

>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=2.8e-05  Score=85.15  Aligned_cols=149  Identities=17%  Similarity=0.208  Sum_probs=108.2

Q ss_pred             cchhhhh-hhhccccccccc-ccCcCceeEEEeeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHhCC-c--EEEEecc
Q psy11602        283 ESWKMLD-EMIQNSEEFYAD-LDTRGIFRVHQFEKVEQFVLTSPHDDESWKTLDEMIQNSEEFYADLGI-A--YRVVNIV  357 (1083)
Q Consensus       283 ~s~~~~~-~~~~~~~~~~~~-~~trGl~Rvhqf~kvE~f~~~~~~~~~s~~~~e~~~~~~e~~~~~L~l-p--yRvv~~~  357 (1083)
                      -|+++|| ++++...+||.. +-..||+|+++|+.-+...||.|  ++..+.+...+..+-.+|..+|+ +  +|.....
T Consensus       140 ~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~~~--~q~~~~~~~~~~~~~~~~~~~g~~~~~lr~~~~~  217 (331)
T d1b76a2         140 ATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRP--GEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQP  217 (331)
T ss_dssp             HHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred             ccccccchhhhhccceecccccccccccccchhhhhhhhhhcCC--cchhHHHHHHHHHHHHHHHHhhccchheeeeeec
Confidence            3788899 888888899983 33479999999999999999999  57788888888888888888887 4  5666677


Q ss_pred             CCCcchhhhceeeEEEeeCCCCcEEeeecccCccc---------------------ccccccceEEecccCCCCceeeEE
Q psy11602        358 SGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLA---------------------YQSRRLLVRYGQTKKMNEKIEFVH  416 (1083)
Q Consensus       358 ~~dl~~~a~~~~DiE~w~P~~~~y~Ev~S~sn~~d---------------------~qarrl~iry~~~~~~~~~~~~~h  416 (1083)
                      ..++...+....|+|.=+|  -.|.|+..+.+=.|                     +.-.+..+.|.+..  +++..-+|
T Consensus       218 ~~e~a~~~~~~~~~e~~~~--~g~~e~eg~~y~~~~Dl~~~~~~~~~~~~~~~q~d~~~s~~~l~~~d~e--~g~k~~P~  293 (331)
T d1b76a2         218 PESSAHYAKATVDILYRFP--HGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPE--TGKWFVPY  293 (331)
T ss_dssp             TTSSCTTEEEEEEEEEEET--TEEEEEEEEEEECSHHHHHTCTTTTTTTCCSCCCCCSSCSSCCCEECSS--SSCEECCE
T ss_pred             cchhhhhhHHHHHHHhcCC--CccccchhhhccccccccccccccccccceeeeeccCCcccceEEEecC--CCeEEece
Confidence            8899999999999999877  34667766644221                     12233345565432  33444467


Q ss_pred             eecccccchhHHHHHHHh-hccC
Q psy11602        417 MLNATACATTRVICAILE-THQT  438 (1083)
Q Consensus       417 tln~t~~a~~R~i~ailE-n~q~  438 (1083)
                      ++-.+ ..+.|+|.|||| +|+.
T Consensus       294 vIe~S-~GieR~~~aiL~e~y~e  315 (331)
T d1b76a2         294 VIEPS-AGVDRGVLALLAEAFTR  315 (331)
T ss_dssp             EEEEE-EEHHHHHHHHHHHHEEE
T ss_pred             EEEcC-CChhHHHHHHHHHHHhh
Confidence            66443 468998877775 5553

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=6.6e-06  Score=72.98  Aligned_cols=45  Identities=22%  Similarity=0.587  Sum_probs=36.1

Q ss_pred             cccccccccCCCC--CCcceecCccCCCccccCCCCCCC----CCCCCCcC
Q psy11602       1036 LSHKCGLCHLSHD--PHTMAKCDTCHLYYHLACLDPPLL----RMPKKTKL 1080 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~--~~~~~~Cd~C~~~yH~~Cl~Ppl~----~~P~~~~~ 1080 (1083)
                      ....|.+|++...  ...|+.||.|+.+||+.||+||+.    .+|+..|.
T Consensus        15 ~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~   65 (88)
T d1weva_          15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY   65 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCC
T ss_pred             CcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEE
Confidence            3456999987654  457999999999999999999987    56776643

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.1e-05  Score=68.57  Aligned_cols=49  Identities=24%  Similarity=0.575  Sum_probs=38.2

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ...+|.||..     .+.||.||.|...||..|+++.....        |.+.|+|..|...
T Consensus         6 ~c~~C~~C~~-----~~~ll~Cd~C~~~~H~~C~~p~l~~~--------p~~~W~C~~C~~~   54 (70)
T d1fp0a1           6 SATICRVCQK-----PGDLVMCNQCEFCFHLDCHLPALQDV--------PGEEWSCSLCHVL   54 (70)
T ss_dssp             SSSCCSSSCS-----SSCCEECTTSSCEECTTSSSTTCCCC--------CSSSCCCCSCCCC
T ss_pred             CCCCCCCCCC-----cCEEEECCCCChhhccccCCCCcCcC--------CCCCEECcCCcCc
Confidence            3457888863     34699999999999999999765322        6789999999654

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.58  E-value=1.9e-05  Score=65.76  Aligned_cols=56  Identities=18%  Similarity=0.357  Sum_probs=42.5

Q ss_pred             CCCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .....|.||..... +++.||+|+.|+.-||..|+++......       ....|+|..|....
T Consensus         4 ~~~~~C~~C~~~~~-~~~~~I~Cd~C~~w~H~~C~~~~~~~~~-------~~~~w~C~~C~~~~   59 (64)
T d1we9a_           4 GSSGQCGACGESYA-ADEFWICCDLCEMWFHGKCVKITPARAE-------HIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCC-SSSCEEECSSSCCEEETTTTTCCTTGGG-------GCSSCCCHHHHTTT
T ss_pred             CCCCcCcCcCCCCC-CCCCEEEcCCCCccCCcccCCcChHHCC-------CCCeEECcCCcCcC
Confidence            34569999986543 3567899999999999999998654221       34679999998753

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.4e-05  Score=64.65  Aligned_cols=50  Identities=24%  Similarity=0.627  Sum_probs=39.5

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      +...|.||..     ++.||.|+.|...||..|.++.....        |.+.|+|..|+...
T Consensus         8 ~~~~C~~C~~-----~g~lv~Cd~C~~~~H~~C~~~~~~~~--------~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           8 HMEFCRVCKD-----GGELLCCDTCPSSYHIHCLNPPLPEI--------PNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCC-----CSSCBCCSSSCCCBCSSSSSSCCSSC--------CSSCCCCTTTTTTC
T ss_pred             CcCCCcCCCC-----CCeEEEeCCCCccCchhhcCCCcCcC--------CCCcEECCCCcCcc
Confidence            4458999973     45799999999999999988755422        66899999997654

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.39  E-value=3.7e-05  Score=65.51  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             cccCCCC-CCcceecCccCCCccccCCCCCCCCCCCCCc
Q psy11602       1042 LCHLSHD-PHTMAKCDTCHLYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus      1042 ~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
                      +|++..+ ...|++||.|+.|||+.|+.+|....|++.|
T Consensus        20 ~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~   58 (72)
T d1weea_          20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKF   58 (72)
T ss_dssp             TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCC
T ss_pred             eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcE
Confidence            7887654 4569999999999999999999999988774

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.26  E-value=5.3e-05  Score=62.97  Aligned_cols=42  Identities=26%  Similarity=0.539  Sum_probs=35.1

Q ss_pred             cccccccccCCCCC-CcceecCccCCCccccCCCCCCCCCCCC
Q psy11602       1036 LSHKCGLCHLSHDP-HTMAKCDTCHLYYHLACLDPPLLRMPKK 1077 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~-~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~ 1077 (1083)
                      ....|.+|++..++ +.|+.||.|+.|||..|+.+|...++..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~   47 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHI   47 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGC
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCC
Confidence            45679999987765 4678999999999999999998887653

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=9.6e-05  Score=62.84  Aligned_cols=49  Identities=29%  Similarity=0.702  Sum_probs=38.6

Q ss_pred             cccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        693 VCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      .| ||.... ++.+.||+|++|..-+|..|+|+.....        +.+.|+|..|...
T Consensus        18 ~C-~C~~~~-~~~~~mv~Cd~C~~w~H~~C~g~~~~~~--------~~~~~~C~~C~~~   66 (72)
T d1weea_          18 DC-KCGTKD-DDGERMLACDGCGVWHHTRCIGINNADA--------LPSKFLCFRCIEL   66 (72)
T ss_dssp             CC-TTCCCS-CCSSCEEECSSSCEEEETTTTTCCTTSC--------CCSCCCCHHHHHH
T ss_pred             Ee-eCCCCc-CCCCeEEEeCCCCCcCchhhcCCccccC--------CCCcEECcCCcCc
Confidence            45 897543 3467899999999999999999865432        5678999999764

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=96.87  E-value=0.00015  Score=57.52  Aligned_cols=38  Identities=32%  Similarity=0.679  Sum_probs=31.2

Q ss_pred             cccccccCCCCCCcceecCc---cCCCccccCCCCCCCCCCCCCc
Q psy11602       1038 HKCGLCHLSHDPHTMAKCDT---CHLYYHLACLDPPLLRMPKKTK 1079 (1083)
Q Consensus      1038 ~~c~~C~~~~~~~~~~~Cd~---C~~~yH~~Cl~Ppl~~~P~~~~ 1079 (1083)
                      ..| +|++..+. .|+.||.   |+.|||+.|+.  |+.+|.+.|
T Consensus         3 ~yC-~C~~~~~~-~mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w   43 (51)
T d2pnxa1           3 TYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKW   43 (51)
T ss_dssp             EET-TTTEECCS-EEEECSCTTCSSCEEEGGGGT--CSSCCSSCC
T ss_pred             cEE-EcCCCCCC-CEEEEecCCCCCCCEeCCccC--CCcCCCCcE
Confidence            346 89988765 4999998   68899999996  888998873

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=96.80  E-value=0.00021  Score=56.75  Aligned_cols=45  Identities=27%  Similarity=0.710  Sum_probs=35.0

Q ss_pred             ccccccCCCCCCCCCcEEEccc---CCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        692 LVCCVCLGERSDDVNEIVECDS---CGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       692 ~~C~VC~~~~~~~~n~iv~Cd~---C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      ..| ||+.+.   ++.||.|++   |..-+|..|.|+...          |.+.|+|..|+.
T Consensus         3 ~yC-~C~~~~---~~~mi~Cd~~~C~~~WfH~~Cvgl~~~----------p~~~w~C~~C~~   50 (51)
T d2pnxa1           3 TYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTK----------PRGKWFCPRCSQ   50 (51)
T ss_dssp             EET-TTTEEC---CSEEEECSCTTCSSCEEEGGGGTCSSC----------CSSCCCCHHHHC
T ss_pred             cEE-EcCCCC---CCCEEEEecCCCCCCCEeCCccCCCcC----------CCCcEECcCCCC
Confidence            467 898542   345999997   566799999998765          568999999964

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00057  Score=57.93  Aligned_cols=47  Identities=23%  Similarity=0.727  Sum_probs=33.8

Q ss_pred             cccccCCCCCCCCCcEEEc--ccCC-cccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        693 VCCVCLGERSDDVNEIVEC--DSCG-VTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       693 ~C~VC~~~~~~~~n~iv~C--d~C~-i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      .++||+..  + +..+|.|  ++|. .-+|..|+|+...          |.+.|+|..|+...
T Consensus        17 ~~CiC~~~--~-~~~~i~c~~~~C~~~wfH~~Cvgl~~~----------p~~~w~C~~C~~~~   66 (71)
T d1wesa_          17 TYCLCNQV--S-YGEMIGCDNEQCPIEWFHFSCVSLTYK----------PKGKWYCPKCRGDS   66 (71)
T ss_dssp             CCSTTCCC--C-CSSEECCSCTTCSCCCEETTTTTCSSC----------CSSCCCCTTTSSCC
T ss_pred             CEEEeCCC--C-CCCEEEEECCCCCCcCccCccCCCCcC----------CCCcEECcCCcccc
Confidence            44599964  2 3346666  4575 5699999998765          67899999998654

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00036  Score=60.30  Aligned_cols=53  Identities=23%  Similarity=0.606  Sum_probs=39.4

Q ss_pred             CccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        691 ILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       691 ~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ..+++||..... .+..||.||.|+.-+|..|.|+.....       ...+.|+|..|...
T Consensus        11 ~pv~CiC~~~~~-~~~~mI~Cd~C~~W~H~~C~g~~~~~~-------~~~~~~~C~~C~~~   63 (79)
T d1wepa_          11 VPVYCLCRQPYN-VNHFMIECGLCQDWFHGSCVGIEEENA-------VDIDIYHCPDCEAV   63 (79)
T ss_dssp             CCCCSTTSCSCC-SSSCEEEBTTTCCEEEHHHHTCCHHHH-------TTCSBBCCTTTTTT
T ss_pred             CCeEeECCCccC-CCCcEEECCCCCCcEeccccCcchhcC-------CCCCEEECccCcCC
Confidence            346779996533 345799999999999999999865421       13457999999754

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.00028  Score=60.29  Aligned_cols=55  Identities=22%  Similarity=0.608  Sum_probs=38.2

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRA  750 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~  750 (1083)
                      ....| ||...  .+++.||+|+.|..-+|..|+|+......   ....+...|+|..|..
T Consensus        15 ~~~~C-iC~~~--~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~---~~~~~~~~w~C~~C~~   69 (76)
T d1wema_          15 NALYC-ICRQP--HNNRFMICCDRCEEWFHGDCVGISEARGR---LLERNGEDYICPNCTI   69 (76)
T ss_dssp             TCCCS-TTCCC--CCSSCEEECSSSCCEEEHHHHSCCHHHHH---HHHHHTCCCCCHHHHH
T ss_pred             CcCEE-ECCCc--cCCCeEEEECCCCCcCCccccCCCccccc---ccCCCCCcEECCCCcC
Confidence            33456 99854  45678999999999999999997542110   0011346799999964

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00037  Score=59.56  Aligned_cols=34  Identities=26%  Similarity=0.711  Sum_probs=29.0

Q ss_pred             cccccccccCCCCCCcceecCccCCCccccCCCCC
Q psy11602       1036 LSHKCGLCHLSHDPHTMAKCDTCHLYYHLACLDPP 1070 (1083)
Q Consensus      1036 ~~~~c~~C~~~~~~~~~~~Cd~C~~~yH~~Cl~Pp 1070 (1083)
                      ....| +|++..+...|++||.|+.|||+.|+..|
T Consensus        15 ~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~   48 (76)
T d1wema_          15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGIS   48 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCC
T ss_pred             CcCEE-ECCCccCCCeEEEECCCCCcCCccccCCC
Confidence            34446 99999999999999999999999999643

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0009  Score=56.65  Aligned_cols=40  Identities=25%  Similarity=0.572  Sum_probs=29.6

Q ss_pred             ccccccCCCCCCcceec--CccC-CCccccCCCCCCCCCCCCCcCC
Q psy11602       1039 KCGLCHLSHDPHTMAKC--DTCH-LYYHLACLDPPLLRMPKKTKLM 1081 (1083)
Q Consensus      1039 ~c~~C~~~~~~~~~~~C--d~C~-~~yH~~Cl~Ppl~~~P~~~~~~ 1081 (1083)
                      .+++|++..+.. |++|  |.|. .|||+.||  +|+.+|.+.|.+
T Consensus        17 ~~CiC~~~~~~~-~i~c~~~~C~~~wfH~~Cv--gl~~~p~~~w~C   59 (71)
T d1wesa_          17 TYCLCNQVSYGE-MIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYC   59 (71)
T ss_dssp             CCSTTCCCCCSS-EECCSCTTCSCCCEETTTT--TCSSCCSSCCCC
T ss_pred             CEEEeCCCCCCC-EEEEECCCCCCcCccCccC--CCCcCCCCcEEC
Confidence            345999876554 5544  6675 69999999  699999988543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.00033  Score=60.54  Aligned_cols=39  Identities=21%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             ccccccCCCC-CCcceecCccCCCccccCCCCCCCCCCCC
Q psy11602       1039 KCGLCHLSHD-PHTMAKCDTCHLYYHLACLDPPLLRMPKK 1077 (1083)
Q Consensus      1039 ~c~~C~~~~~-~~~~~~Cd~C~~~yH~~Cl~Ppl~~~P~~ 1077 (1083)
                      +|++|++..+ ...|+.||.|+.|||..|+.++-..+|..
T Consensus        13 v~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~   52 (79)
T d1wepa_          13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDI   52 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTC
T ss_pred             eEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCC
Confidence            4559999765 44699999999999999999876665553

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.15  E-value=0.0016  Score=55.86  Aligned_cols=58  Identities=26%  Similarity=0.576  Sum_probs=39.0

Q ss_pred             CCCccccccCCCCCCCCCcEEEcc--cCCcccccccccccccCCCcccCCCCCCCCcccccccCCC
Q psy11602        689 SKILVCCVCLGERSDDVNEIVECD--SCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       689 ~~~~~C~VC~~~~~~~~n~iv~Cd--~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ++...| ||+...  +.+.+|.|+  .|..-+|..|+|+...+..   ........|+|..|+...
T Consensus        14 ~~~~~C-~C~~~~--~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~---~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_          14 EIKVRC-VCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMD---GNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCCCC-SSCCCC--CCSCEEECSSTTTCCEEEHHHHSCCCTTTC---SCSCSCSSCCCHHHHHCC
T ss_pred             CCccEe-ECCCcc--CCCcEEEEeCCCCCcCCCccccCccccccc---cccCCCCEEECCCCcCcC
Confidence            334456 999643  356788887  7999999999999654211   011123469999997653

>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Lactococcus lactis [TaxId: 1358]

Probab=95.06  E-value=0.028  Score=59.72  Aligned_cols=87  Identities=18%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      +.|++++.++|+|=-=.+++-+++.   ...++|.|++.++++||+|....|       |.|||.....=.+..+.    
T Consensus        66 ~~d~~g~~l~LRpD~T~~iaR~~~~---~~~~~~~r~~Y~g~vfR~~~~~~~-------r~rE~~Q~g~EiiG~~~----  131 (318)
T d1z7ma1          66 FIKHEGQSITLRYDFTLPLVRLYSQ---IKDSTSARYSYFGKIFRKEKRHKG-------RSTENYQIGIELFGESA----  131 (318)
T ss_dssp             EECTTCCEEEECCCSHHHHHHHHHT---CCSCCCEEEEEEEECCCCCC--------------CCEEEEEEEESSCH----
T ss_pred             eecCCccEEEeeccccchHHHHHHH---hcccCCcccccccceeEEcccccc-------ccchhhhhheeccccch----
Confidence            5688999999999888888877764   345789999999999999985444       78899877665665543    


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      ...-.+++....++++.||++
T Consensus       132 ~~ad~Eii~l~~e~l~~lgi~  152 (318)
T d1z7ma1         132 DKSELEILSLALQVIEQLGLN  152 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCS
T ss_pred             hhHHHHHHHHHHHHHHHhhhc
Confidence            234567888999999999997

>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Thermus thermophilus [TaxId: 274]

Probab=93.69  E-value=0.094  Score=55.72  Aligned_cols=96  Identities=19%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|..++.++|+|=--.+++.++...-......|+|++.++++||.+....|       |.|||..+..=.+-.+. ..|
T Consensus        67 ~~d~~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~~g-------r~re~~Q~g~EiiG~~~-~~a  138 (324)
T d1h4vb2          67 FQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG-------RYRQFHQVNYEALGSEN-PIL  138 (324)
T ss_dssp             EECTTSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC-----------CCEEEEEEEEEESCCC-HHH
T ss_pred             hhccCCcccccccccccHHHHHHHHhhhhhhchhhhheeeCcccccCcccCC-------CcceeccccccccCCCC-hHH
Confidence            5677899999999999999998887766667789999999999999986544       88999888777776655 333


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEe
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYRVVNI  119 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyrvv~~  119 (1083)
                      +   .+++....++++.||+.-..+.+
T Consensus       139 d---~Eii~l~~~~l~~l~~~~~~~~i  162 (324)
T d1h4vb2         139 D---AEAVVLLYECLKELGLRRLKVKL  162 (324)
T ss_dssp             H---HHHHHHHHHHHHHTTCCSCEEEE
T ss_pred             H---HHHHHHHHHHHHHhcccCcceee
Confidence            3   56778888899999988644433

>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.60  E-value=0.071  Score=56.65  Aligned_cols=91  Identities=14%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             CCCCCCCeeEecCChHHHHHHHhccc-CCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         14 EKDELDDKYLIATSEQPICAVHRDSW-LPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        14 ~dr~~~~~~L~pTsE~~i~~l~~~~i-~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      .|+.+..+.|+|.-..+++..+.... .+...+|+|+|.++++||.+....|       |.|||..+..=.+..+. ..|
T Consensus        68 ~d~~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~-------~~rE~~Q~G~EiiG~~~-~~a  139 (325)
T d1qe0a2          68 KDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKG-------RYRQFNQFGVEAIGAEN-PSV  139 (325)
T ss_dssp             CHHHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------------CCEEEEEEEEEESCCC-HHH
T ss_pred             hccccccccccccccccHHHHHHhhccccccccchhhheecceeeeccccCC-------ccceeeecceeecCCcC-cHH
Confidence            46777899999999999998766544 5678899999999999999986544       77899887776666665 333


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceE
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAYR  115 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpyr  115 (1083)
                      +   -+++....++++.+|+.-.
T Consensus       140 d---~Eii~l~~~~l~~~g~~~~  159 (325)
T d1qe0a2         140 D---AEVLAMVMHIYQSFGLKHL  159 (325)
T ss_dssp             H---HHHHHHHHHHHHHTTCCCE
T ss_pred             H---HHHHHHHHHHHHhhCCcCc
Confidence            3   5678888899999998643

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.58  E-value=0.015  Score=49.53  Aligned_cols=38  Identities=29%  Similarity=0.832  Sum_probs=28.9

Q ss_pred             ccccccccCCCCCCcceecC--ccCCCccccCCC---CCCCCCC
Q psy11602       1037 SHKCGLCHLSHDPHTMAKCD--TCHLYYHLACLD---PPLLRMP 1075 (1083)
Q Consensus      1037 ~~~c~~C~~~~~~~~~~~Cd--~C~~~yH~~Cl~---Ppl~~~P 1075 (1083)
                      ...| +|+...+...|++||  .|+.|||+.|+.   +|+...+
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~   58 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNP   58 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCS
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCcccccccccc
Confidence            3445 999988888888887  799999999973   3454443

>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.52  E-value=0.13  Score=54.66  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|++++.++|+|=.-.+++-+++...  ....|+|+|.++++||.+....|       |.|||..+..=.+..+. ..+
T Consensus        66 f~D~~g~~l~LRpD~T~~iar~~~~~~--~~~~p~k~~y~g~VfR~~~~~~g-------~~re~~Q~G~EiiG~~~-~~~  135 (327)
T d1wu7a2          66 FVDKGGREVTLIPEATPSTVRMVTSRK--DLQRPLRWYSFPKVWRYEEPQAG-------RYREHYQFNADIFGSDS-PEA  135 (327)
T ss_dssp             EECTTSCEEEECSCSHHHHHHHHTTCT--TCCSSEEEEECCEEECCCCSCSS-------CCSEEEEEEEEEESCCS-HHH
T ss_pred             hhcccchhhcccccccchhhhHhhhhh--hccccceeeccCcceeccccccC-------CcchhhhhhhhhcCCcc-hHH
Confidence            578899999999999999988876542  34679999999999999985444       66788776655555554 233


Q ss_pred             HHHHHHHHHHHHHHHHHcCCc
Q psy11602         93 WKMLDEMIQNSEEFYADLGIA  113 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLp  113 (1083)
                      +   -|++....++++.+|++
T Consensus       136 D---~Eii~l~~~~l~~~~~~  153 (327)
T d1wu7a2         136 D---AEVIALASSILDRLGLQ  153 (327)
T ss_dssp             H---HHHHHHHHHHHHHTTTT
T ss_pred             H---HHHHHHHHHHHhccccc
Confidence            2   46778888899999974

>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
species: Thermus thermophilus [TaxId: 274]

Probab=92.99  E-value=0.24  Score=51.45  Aligned_cols=145  Identities=14%  Similarity=0.109  Sum_probs=89.2

Q ss_pred             eeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHHHHHH
Q psy11602         21 KYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKMLDEMI  100 (1083)
Q Consensus        21 ~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~~~~~  100 (1083)
                      ..|..||-.++..-.....    .-|+++..++.+||+|.-.+       .+..+|..+|.+.++..-      .+..+.
T Consensus        88 ~~lLRTHTS~~q~r~~~~~----~~p~~~~~~g~VyRrd~iD~-------tH~p~FhQ~eg~~vd~~~------~~~~Lk  150 (266)
T d1jjca_          88 RLLLRTHTSPMQVRYMVAH----TPPFRIVVPGRVFRFEQTDA-------THEAVFHQLEGLVVGEGI------AMAHLK  150 (266)
T ss_dssp             CEEECSSSTHHHHHHHHHS----CSSEEEEEEEEEECCSCCCS-------SCCSEEEEEEEEEEETTC------CHHHHH
T ss_pred             hhhhccCCcHHHHHHHhcc----CCCceEEecccceecCCCCC-------cccccceeeeeeeccccc------cHHHHH
Confidence            3577899888876554433    34999999999999876221       156789999999998776      234455


Q ss_pred             HHHHHHHHHcC---CceEEEEeccCCCCcccceeEeEEEEecCCCceeEEEEcCCCchhhhhcccceecc-------CCC
Q psy11602        101 QNSEEFYADLG---IAYRVVNIVSGALNHAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQSRRLLVRYGQ-------TKQ  170 (1083)
Q Consensus       101 ~~y~~if~~Lg---Lpyrvv~~~sgdlg~~as~~~diE~~~P~~~~~~ev~s~s~cgdyqs~rl~i~y~~-------~~~  170 (1083)
                      ...+.|++.+.   +.+|..  |+-  ++--.-.+.++++.|..++|+||.-|-..-...=+..+|-+..       .+.
T Consensus       151 ~~l~~~~~~~f~~~~~~R~~--p~y--FPFTePS~Ev~v~~~~~~~WlEilG~Gmv~p~vL~~~gi~~~~~g~~~~~~~~  226 (266)
T d1jjca_         151 GAIYELAQALFGPDSKVRFQ--PVY--FPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGV  226 (266)
T ss_dssp             HHHHHHHHHHHCTTCCEEEE--ECC--CTTEEEEEEEEEEEGGGTEEEEEEEEEEECHHHHHHHHHHHHTTTCCCCCTTC
T ss_pred             HHHHHHHHHhcCCCcEEEEe--ccc--CCCccCCcceEEEEeecCCcceEEeecccCHHHHHhcCCchhhccCCccccCC
Confidence            55566666554   334443  333  3333345566778898899999998654432222222221110       111


Q ss_pred             ccccccccchhheehe
Q psy11602        171 KIYATACATTRVICAI  186 (1083)
Q Consensus       171 ~~n~tg~a~~Rli~Al  186 (1083)
                      .--+.|+++.|+.-.+
T Consensus       227 ~g~AfGlGlERlAMl~  242 (266)
T d1jjca_         227 TGFAFGLGVERLAMLR  242 (266)
T ss_dssp             EEEEEEEEHHHHHHHH
T ss_pred             eEEEEeecHHHHHHHH
Confidence            2446688999986543

>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.24  Score=52.24  Aligned_cols=90  Identities=19%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             CCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHH
Q psy11602         13 PEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDES   92 (1083)
Q Consensus        13 ~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s   92 (1083)
                      ..|.+++.+.|+|=--.+++-+++... .....|+|+|.++++||.|....|       |.|||..+..=.+-.+. ..+
T Consensus        67 ~~d~~g~~l~Lr~D~T~~iaR~~~~~~-~~~~~p~r~~y~g~v~r~~~~~~g-------r~re~~Q~g~EiiG~~~-~~a  137 (322)
T d1kmma2          67 FEDRNGDSLTLRPEGTAGCVRAGIEHG-LLYNQEQRLWYIGPMFRHERPQKG-------RYRQFHQLGCEVFGLQG-PDI  137 (322)
T ss_dssp             EECTTSCEEEECSCSHHHHHHHHHHTT-CSTTCCEEEEEEEEEECCCCCBTT-------BCSEEEEEEEEEESCCS-HHH
T ss_pred             hhhcccccccccccccchhhHHHHhhh-hhhhhhhhHhhcccccccCCCCCC-------ccchhhhhhHHHhcccc-chh
Confidence            567889999999998889998887543 445789999999999999986655       78899876554454444 233


Q ss_pred             HHHHHHHHHHHHHHHHHcCCce
Q psy11602         93 WKMLDEMIQNSEEFYADLGIAY  114 (1083)
Q Consensus        93 ~~~~~~~~~~y~~if~~LgLpy  114 (1083)
                      +   .+++....++++.||+..
T Consensus       138 d---~Eii~l~~~~l~~lgl~~  156 (322)
T d1kmma2         138 D---AELIMLTARWWRALGISE  156 (322)
T ss_dssp             H---HHHHHHHHHHHHHHTCGG
T ss_pred             H---HHHHHHHHHHHHhcCCCc
Confidence            3   467888888999999975

>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.33  Score=50.36  Aligned_cols=91  Identities=7%  Similarity=-0.099  Sum_probs=65.7

Q ss_pred             CCCCCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchH
Q psy11602         12 APEKDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDE   91 (1083)
Q Consensus        12 ~~~dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~   91 (1083)
                      .-.|+.++.++|+|=--.+++-+++..   ..+.|+|+|.++++||.+.+          +.|||..+..=.+..+. ..
T Consensus        39 ~F~D~~g~~l~LRpD~T~~iaR~~~~~---~~~~p~k~~Y~g~VfR~~~~----------~~re~~Q~G~EiiG~~~-~~  104 (275)
T d1usya_          39 FFLDRKGNLFSIREDFTKTVLNHRKRY---SPDSQIKVWYADFVYRYSGS----------DLVAEYQLGLEKVPRNS-LD  104 (275)
T ss_dssp             CEEETTSCEEEECCCHHHHHHHHHTTC---TTCCCEEEECCEEEEEEETT----------EEEEEEEEEEEEESCCS-HH
T ss_pred             eeEcCCCCEEEECCCCcHHHHHHHHHc---CCCCCeeeeEEeeEEEeCCC----------cccceeecCceeechhh-HH
Confidence            356899999999999889998877753   34679999999999998752          35777655333344444 22


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEe
Q psy11602         92 SWKMLDEMIQNSEEFYADLGIAYRVVNI  119 (1083)
Q Consensus        92 s~~~~~~~~~~y~~if~~LgLpyrvv~~  119 (1083)
                      |   =.+++....++|+.||++=..+++
T Consensus       105 a---D~Evi~l~~~~l~~lgi~~~~i~l  129 (275)
T d1usya_         105 D---SLEVLEIIVESASEFFEGPVIVEI  129 (275)
T ss_dssp             H---HHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             H---HHHHHHHHHHHHHhhcccccEEEe
Confidence            3   256788888999999997433444

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.92  E-value=0.37  Score=44.20  Aligned_cols=54  Identities=19%  Similarity=0.412  Sum_probs=38.3

Q ss_pred             CCccccccCCCCCCCCCcEEEcccCCcccccccccccccCCCcccCCCCCCCCcccccccCC
Q psy11602        690 KILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQDTASISSTVSSCSTEPWFCESCRAG  751 (1083)
Q Consensus       690 ~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~~~~~~~~~~~~~~~~W~Cd~C~~~  751 (1083)
                      ....|.+|......-.+.-..|..|+..|+..|-.......        +...|+|..|...
T Consensus        47 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~--------~~~~w~C~~C~k~  100 (124)
T d1zbdb_          47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR--------PHPVWLCKICLEQ  100 (124)
T ss_dssp             SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS--------SSCCEEEHHHHHH
T ss_pred             CCCcCcccCCcccCCCCCCCcCccCCcccccCCCCCccCCC--------CCCCEECccCcch
Confidence            34589999876554456778999999999999964322211        3456999999653

>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Hypothetical protein PF1951
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.73  E-value=0.55  Score=49.27  Aligned_cols=83  Identities=10%  Similarity=-0.026  Sum_probs=50.0

Q ss_pred             CCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHHHH
Q psy11602         17 ELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWKML   96 (1083)
Q Consensus        17 ~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~~~   96 (1083)
                      .++.++|..+.|-.+=-+++.      .| =++|||+++||+|...+.    +--+.-||+|.|.|....+. ++..+..
T Consensus        65 ~~~~~yL~~SPel~lk~lla~------g~-~~Vf~I~~~FR~E~~~s~----t~RH~~EFtmLE~e~~~~d~-~d~m~~~  132 (293)
T d1nnha_          65 YGVKMRLTHSMILHKQLAIAM------GL-KKIFVLSPNIRLESRQKD----DGRHAYEFTQLDFEVERAKM-EDIMRLI  132 (293)
T ss_dssp             TTEEEEECSCSHHHHHHHHHT------TC-CEEEEEEEEECCCCGGGC----SSSCCSEEEEEEEEEETCCH-HHHHHHH
T ss_pred             CCceeecccChhhhHHHHHHh------cc-ccceeechhhhcCcccCC----CCccchhhhhhccccccccH-HHHHHHH
Confidence            356779998888554322221      12 179999999999963210    11256699999988765443 5566666


Q ss_pred             HHHHH-HHHHHHHHcC
Q psy11602         97 DEMIQ-NSEEFYADLG  111 (1083)
Q Consensus        97 ~~~~~-~y~~if~~Lg  111 (1083)
                      ++++. +++.+.+.++
T Consensus       133 e~li~~~~~~~~~~~~  148 (293)
T d1nnha_         133 ERLVYGLFRKAEEWTG  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            66552 3333444333

>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

Probab=81.48  E-value=1.5  Score=46.33  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             CCCCCCeeEecCChHHHHHHHhcccCCCCCCCceEeeeccccccccccCCCCCCCceEEEEEeEEEEEEEeCCCchHHHH
Q psy11602         15 KDELDDKYLIATSEQPICAVHRDSWLPEASLPIRYLGVSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDDESWK   94 (1083)
Q Consensus        15 dr~~~~~~L~pTsE~~i~~l~~~~i~s~~~LPlklyqi~~~fR~E~~~~gk~trGL~R~rEF~~~e~~~~~~~~~e~s~~   94 (1083)
                      +..+.+++|.-+.|..+--+++..      + =++|||+++||+|-....   |   ..-||+|.+.+.......++..+
T Consensus        76 ~~~~~~~yL~~SpE~~lkrll~~g------~-~~if~i~~~FR~e~~~~~---r---h~~Ef~~le~~~~~~~~~~~l~~  142 (335)
T d1b8aa2          76 KYFEEDAFLAESPQLYKEIMMASG------L-DRVYEIAPIFRAEEHNTT---R---HLNEAWSIDSEMAFIEDEEEVMS  142 (335)
T ss_dssp             EETTEEEEECSCSHHHHHHGGGTT------C-CEEEEEEEEECCCSSCCS---S---CCSEEEEEEEEEESCSSHHHHHH
T ss_pred             cccccccccccChHHHHHHHHhhh------h-hhHHHhhccccccccccc---c---cchHHHhhhHHHHHHHhhhhHHH
Confidence            345678899988886555444321      1 289999999999963211   1   12399999877766544355666


Q ss_pred             HHHHHHHH
Q psy11602         95 MLDEMIQN  102 (1083)
Q Consensus        95 ~~~~~~~~  102 (1083)
                      ..++++..
T Consensus       143 ~~e~~~~~  150 (335)
T d1b8aa2         143 FLERLVAH  150 (335)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            56655543

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.49  Score=40.04  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=43.9

Q ss_pred             cccCCCCCccccccCCCCCCCCCcEEEcccCCcccccccccccc-c---CCCcccCCCCCCCCcccccccCCC
Q psy11602        684 DFSKFSKILVCCVCLGERSDDVNEIVECDSCGVTVHEGCYGVQD-T---ASISSTVSSCSTEPWFCESCRAGI  752 (1083)
Q Consensus       684 d~~~~~~~~~C~VC~~~~~~~~n~iv~Cd~C~i~VH~~CYGv~~-~---~~~~~~~~~~~~~~W~Cd~C~~~~  752 (1083)
                      ...+...|..|.||...   ..+.++-|.-|+..+|..|..-.. .   ....-+...-.+..|.|--|.+-.
T Consensus         8 ~re~v~~D~mC~vC~v~---t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~nl~   77 (89)
T d1wila_           8 PREPVVNDEMCDVCEVW---TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN   77 (89)
T ss_dssp             SCCCCCCSCCCTTTCCC---CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred             cccCCCcCccccccCcc---cccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcchh
Confidence            33446788999999643   467888999999999999975421 1   001111122245679999998753