Psyllid ID: psy11615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSVYFMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCIYT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHcccHHEcHEEEcccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEc
Coil and Loop (DISEMBL)
MSVYFMAEKQLQQAREACEKLRKKRSSLVGAFVsthgksiddvdrnstshvkDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQAlqgdasdlksssafsdLEVCQLKQEIELLRNELQRAEgeledrcwapppglqhWLQLTHEIENKAYVKKKLMAEKQLQQAREARFdrgkciyt
Flexible Loop (DISEMBL)
MSVYFMAEKQLQQAREACEKLRKKRSSLVgafvsthgksiddvdrnsTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQarearfdrgkciyt
Low Complexity Region (SEG)
MSVYFMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYilgtlilialtiCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCIYT
Disordered region (IsUnstruct)
****************************VGAFVST************TSHVKDYILGTLILIALTICWYVYR***************************************************************************LEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKL**********************
Disordered Region (DISOPRED)
************************RSSLVGAFVSTHGKSIDDV*RNSTSHVKDYILGTLILIALTICWYVYRQKE*********************************************************************************************************GLQHWLQLTHEIENKAYVKKKLMA*************RG*CI**
Disordered Region (DISEMBL)
MSVYFMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQK********RMMKDMEGLQRAELDLANLQKEL************EKIKLERRLQE************SSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCIYT
Disordered Region (DISPRO)
*SVYFMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCIYT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVSTHGKSIDDVDRNSTSHVKDYILGTLILIALTICWYVYRQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGDASDLKSSSAFSDLExxxxxxxxxxxxxxxxxxxxxxxxxCWAPPPGLQHWLQLTHEIExxxxxxxxxxxxxxxxxxxxxRFDRGKCIYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P83094	570	Stromal interaction molec	yes	N/A	0.718	0.282	0.6	5e-49
Q13586	685	Stromal interaction molec	yes	N/A	0.741	0.242	0.409	5e-25
Q58CP9	683	Stromal interaction molec	yes	N/A	0.741	0.243	0.409	6e-25
P84903	685	Stromal interaction molec	yes	N/A	0.741	0.242	0.403	9e-25
P70302	685	Stromal interaction molec	yes	N/A	0.741	0.242	0.403	1e-24
Q9P246	746	Stromal interaction molec	no	N/A	0.754	0.226	0.396	6e-24
P83093	746	Stromal interaction molec	no	N/A	0.754	0.226	0.390	4e-23

>sp|P83094|STIM_DROME Stromal interaction molecule homolog OS=Drosophila melanogaster GN=Stim PE=1 SV=1

 Score =  194 bits (492), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 126/170 (74%), Gaps = 9/170 (5%)

Query: 45  RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
           R + +  KDYIL TL+L A+  CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKE
Sbjct: 285 RETGTRWKDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKE 344

Query: 105 LERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164
           LERAR EQEN A+EK+ LERRL+E   L         SS+ SDLEV QLK+EIE+LRNEL
Sbjct: 345 LERARMEQENVATEKLDLERRLKEAPTL---------SSSNSDLEVQQLKKEIEMLRNEL 395

Query: 165 QRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
            RAE EL D CW+PPP LQ WLQ T+E+E+K + KK+  AEKQLQ AREA
Sbjct: 396 SRAEFELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREA 445

Plays a role in mediating Ca(2+) influx following depletion of intracellular Ca(2+) stores.
Drosophila melanogaster (taxid: 7227)

>sp|Q13586|STIM1_HUMAN Stromal interaction molecule 1 OS=Homo sapiens GN=STIM1 PE=1 SV=3

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 5/171 (2%)

Query: 49  SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
           +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct: 209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query: 109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
           ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct: 269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query: 165 QRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E 
Sbjct: 329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEG 379

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Homo sapiens (taxid: 9606)

>sp|Q58CP9|STIM1_BOVIN Stromal interaction molecule 1 OS=Bos taurus GN=STIM1 PE=2 SV=1

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 5/171 (2%)

Query: 49  SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
           +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct: 207 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 266

Query: 109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
           ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct: 267 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 326

Query: 165 QRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E 
Sbjct: 327 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEG 377

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Bos taurus (taxid: 9913)

>sp|P84903|STIM1_RAT Stromal interaction molecule 1 OS=Rattus norvegicus GN=Stim1 PE=1 SV=1

 Score =  113 bits (283), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 106/171 (61%), Gaps = 5/171 (2%)

Query: 49  SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
           +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct: 209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query: 109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
           ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct: 269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query: 165 QRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AE+QL  A+E 
Sbjct: 329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAERQLLVAKEG 379

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Rattus norvegicus (taxid: 10116)

>sp|P70302|STIM1_MOUSE Stromal interaction molecule 1 OS=Mus musculus GN=Stim1 PE=1 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 106/171 (61%), Gaps = 5/171 (2%)

Query: 49  SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
           +H+KD++L   I+I +  CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct: 209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query: 109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
           ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct: 269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query: 165 QRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AE+QL  A+E 
Sbjct: 329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAERQLLVAKEG 379

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Acts as Ca(2+) sensor in the endoplasmic reticulum via its EF-hand domain. Upon Ca(2+) depletion, translocates from the endoplasmic reticulum to the plasma membrane where it activates the Ca(2+) release-activated Ca(2+) (CRAC) channel subunit, TMEM142A/ORAI1.

Mus musculus (taxid: 10090)

>sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo sapiens GN=STIM2 PE=1 SV=2

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 5/174 (2%)

Query: 45  RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
           R   + +KD+IL   I+I +  CW+ Y Q ++S++H+ +MMKD+E LQ AE  L +LQ+ 
Sbjct: 209 RPPHNWMKDFILTVSIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQER 268

Query: 105 LERARQEQENAASEKIKLERR-LQEHQALQGDASDLKSSSAFSDLEVCQ---LKQEIELL 160
           LE+A++E  N A EK  LER+ + E    + +A  L+     ++ E+ +    +QE+E +
Sbjct: 269 LEKAQEENRNVAVEKQNLERKMMDEINYAKEEACRLRELREGAECELSRRQYAEQELEQV 328

Query: 161 RNELQRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
           R  L++AE E E R  W+ P  LQ WLQLTHE+E + Y  K+  AE QL  A++
Sbjct: 329 RMALKKAEKEFELRSSWSVPDALQKWLQLTHEVEVQYYNIKRQNAEMQLAIAKD 382

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Functions as a highly sensitive Ca(2+) sensor in the endoplasmic reticulum which activates both store-operated and store-independent Ca(2+)-influx. Regulates basal cytosolic and endoplasmic reticulum Ca(2+) concentrations. Upon mild variations of the endoplasmic reticulum Ca(2+) concentration, translocates from the endoplasmic reticulum to the plasma membrane where it probably activates the Ca(2+) release-activated Ca(2+) (CRAC) channels ORAI1, ORAI2 and ORAI3. May inhibit STIM1-mediated Ca(2+) influx.

Homo sapiens (taxid: 9606)

>sp|P83093|STIM2_MOUSE Stromal interaction molecule 2 OS=Mus musculus GN=Stim2 PE=1 SV=2

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 5/174 (2%)

Query: 45  RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
           R   + +KD+IL   I+I +  CW+ Y Q ++S++H+ +MMKD+E LQ AE  L +LQ+ 
Sbjct: 209 RPPHNWMKDFILTISIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQER 268

Query: 105 LERARQEQENAASEKIKLERR-LQEHQALQGDASDLKSSSAFSDLEVCQ---LKQEIELL 160
           LE+A++E    A EK  LER+ + E    + +A  L+     ++ E+ +    +QE+E +
Sbjct: 269 LEKAQEENRTVAVEKQNLERKMMDEINYAKEEACRLRELREGAECELSRRQYAEQELEQV 328

Query: 161 RNELQRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
           R  L++AE E E R  W+ P  LQ WLQLTHE+E + Y  K+  AE QL  A++
Sbjct: 329 RMALKKAEKEFELRSSWSVPDALQKWLQLTHEVEVQYYNIKRQNAEMQLAIAKD 382

Plays a role in mediating store-operated Ca(2+) entry (SOCE), a Ca(2+) influx following depletion of intracellular Ca(2+) stores. Functions as a highly sensitive Ca(2+) sensor in the endoplasmic reticulum which activates both store-operated and store-independent Ca(2+)-influx. Regulates basal cytosolic and endoplasmic reticulum Ca(2+) concentrations. Upon mild variations of the endoplasmic reticulum Ca(2+) concentration, translocates from the endoplasmic reticulum to the plasma membrane where it probably activates the Ca(2+) release-activated Ca(2+) (CRAC) channels ORAI1, ORAI2 and ORAI3. May inhibit STIM1-mediated Ca(2+) influx.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
383857263	682	PREDICTED: stromal interaction molecule	0.709	0.233	0.672	1e-55
380024983	684	PREDICTED: stromal interaction molecule	0.709	0.232	0.666	6e-55
328791181	687	PREDICTED: stromal interaction molecule	0.709	0.231	0.666	6e-55
307203101	676	Stromal interaction molecule-like protei	0.723	0.239	0.647	4e-54
332027379	694	Stromal interaction molecule-like protei	0.723	0.233	0.629	8e-54
340722715	683	PREDICTED: stromal interaction molecule	0.709	0.232	0.648	3e-53
307184242	518	Stromal interaction molecule-like protei	0.696	0.301	0.664	3e-53
242003335	528	conserved hypothetical protein [Pediculu	0.709	0.301	0.628	5e-52
328720373	657	PREDICTED: stromal interaction molecule	0.75	0.255	0.629	6e-52
350424379	683	PREDICTED: stromal interaction molecule	0.709	0.232	0.630	8e-52

>gi|383857263|ref|XP_003704124.1| PREDICTED: stromal interaction molecule homolog [Megachile rotundata]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 133/168 (79%), Gaps = 9/168 (5%)

Query: 48  TSH-VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 106
           T H +KD IL TL+  AL  CWYVY+QK++SQ+HL RMMKDME L +AEL L +LQKELE
Sbjct: 234 TGHSIKDLILITLLFGALIGCWYVYQQKKNSQKHLHRMMKDMESLHKAELALEDLQKELE 293

Query: 107 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQR 166
           RAR EQE+A +EK  LE+RLQ+          +   +++SDLEV QLK EIE+L+ ELQR
Sbjct: 294 RARMEQESATTEKQNLEKRLQDES--------MGLHASYSDLEVSQLKAEIEMLKVELQR 345

Query: 167 AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           AEGELEDRCW+PPPGLQHWLQLTHEIENKAY KKK+ AEKQLQQAREA
Sbjct: 346 AEGELEDRCWSPPPGLQHWLQLTHEIENKAYTKKKISAEKQLQQAREA 393

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024983|ref|XP_003696263.1| PREDICTED: stromal interaction molecule homolog [Apis florea]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 131/168 (77%), Gaps = 9/168 (5%)

Query: 48  TSH-VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 106
           T H VKD IL TL+  AL  CWY Y+QK++SQ+HL RMMKDME L +AEL L +LQKELE
Sbjct: 235 TGHSVKDLILITLLFGALIGCWYAYQQKKNSQKHLHRMMKDMESLHKAELALEDLQKELE 294

Query: 107 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQR 166
           RAR EQE+  +EK  LE+RLQ+          +   +++SDLEV QLK EIE+L+ ELQR
Sbjct: 295 RARMEQESVTTEKQNLEKRLQDES--------VGLHASYSDLEVSQLKAEIEMLKVELQR 346

Query: 167 AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           AEGELEDRCW+PPPGLQHWLQLTHEIENKAY KKK+ AEKQLQQAREA
Sbjct: 347 AEGELEDRCWSPPPGLQHWLQLTHEIENKAYTKKKISAEKQLQQAREA 394

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791181|ref|XP_395207.4| PREDICTED: stromal interaction molecule homolog isoform 1 [Apis mellifera]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 131/168 (77%), Gaps = 9/168 (5%)

Query: 48  TSH-VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 106
           T H VKD IL TL+  AL  CWY Y+QK++SQ+HL RMMKDME L +AEL L +LQKELE
Sbjct: 235 TGHSVKDLILITLLFGALIGCWYAYQQKKNSQKHLHRMMKDMESLHKAELALEDLQKELE 294

Query: 107 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQR 166
           RAR EQE+  +EK  LE+RLQ+          +   +++SDLEV QLK EIE+L+ ELQR
Sbjct: 295 RARMEQESVTTEKQNLEKRLQDES--------VGLHASYSDLEVSQLKAEIEMLKVELQR 346

Query: 167 AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           AEGELEDRCW+PPPGLQHWLQLTHEIENKAY KKK+ AEKQLQQAREA
Sbjct: 347 AEGELEDRCWSPPPGLQHWLQLTHEIENKAYTKKKISAEKQLQQAREA 394

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203101|gb|EFN82281.1| Stromal interaction molecule-like protein [Harpegnathos saltator]

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/170 (64%), Positives = 133/170 (78%), Gaps = 8/170 (4%)

Query: 45  RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
           +++   +KD +L TL+  AL  CWY Y+QK++SQ+HL RMMKDME L +AEL L +LQKE
Sbjct: 232 KDAGHSIKDLVLVTLLFGALIGCWYAYQQKKNSQKHLLRMMKDMESLHKAELALEDLQKE 291

Query: 105 LERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164
           LERAR EQE+AA+EK  LE+RLQ+          L   +++SDLEV QLK EIE+L+ EL
Sbjct: 292 LERARMEQESAATEKQNLEKRLQDES--------LGLHTSYSDLEVSQLKAEIEMLKLEL 343

Query: 165 QRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           QRAEGELEDRCW+PP GLQHWLQLTHEIENKAY KKK+ AEKQLQQAREA
Sbjct: 344 QRAEGELEDRCWSPPAGLQHWLQLTHEIENKAYTKKKIAAEKQLQQAREA 393

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027379|gb|EGI67462.1| Stromal interaction molecule-like protein [Acromyrmex echinatior]

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 133/170 (78%), Gaps = 8/170 (4%)

Query: 45  RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
           +++  ++KD +L  L+  AL  CW++Y+Q+++SQ HL RMMKDME L++AEL L NLQKE
Sbjct: 233 KDTGHNIKDLLLVILLFGALIGCWFIYQQRKNSQNHLHRMMKDMESLRKAELALENLQKE 292

Query: 105 LERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164
           LERAR EQE+AA+EK  LE+RLQ+          L   +++SDLEV QLK EIE+L+ EL
Sbjct: 293 LERARMEQESAATEKQNLEKRLQDES--------LGLHTSYSDLEVSQLKAEIEMLKLEL 344

Query: 165 QRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           QRAEGELEDRCW+PP GLQHWLQLTHEIENKAY  KK+ AEKQLQQAREA
Sbjct: 345 QRAEGELEDRCWSPPAGLQHWLQLTHEIENKAYTNKKIAAEKQLQQAREA 394

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722715|ref|XP_003399748.1| PREDICTED: stromal interaction molecule homolog [Bombus terrestris]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/168 (64%), Positives = 130/168 (77%), Gaps = 9/168 (5%)

Query: 48  TSH-VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 106
           T H +KD +L TL+  AL  CWY Y+QK++SQ+HL RMMKDME L +AEL L +LQKELE
Sbjct: 234 TGHGIKDLVLITLLFGALIGCWYAYQQKKNSQKHLHRMMKDMESLHKAELALEDLQKELE 293

Query: 107 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQR 166
           RAR EQE+  +EK  LE+RLQ+          +   +++SDLEV QLK EIE+L+ ELQR
Sbjct: 294 RARMEQESVTTEKQNLEKRLQDES--------VGLHASYSDLEVSQLKAEIEMLKVELQR 345

Query: 167 AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           AEGELEDRCW+PP GLQHWLQLTHEIENKAY KKK+ AEKQLQQAREA
Sbjct: 346 AEGELEDRCWSPPAGLQHWLQLTHEIENKAYTKKKISAEKQLQQAREA 393

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184242|gb|EFN70715.1| Stromal interaction molecule-like protein [Camponotus floridanus]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 127/164 (77%), Gaps = 8/164 (4%)

Query: 51  VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110
           +KD +L TL+  AL  CWY Y+QK+SSQ+ L RMMKDME L +AEL L NLQKELERAR 
Sbjct: 236 IKDLVLVTLLFGALIGCWYAYQQKKSSQKDLHRMMKDMESLHKAELALENLQKELERARM 295

Query: 111 EQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGE 170
           EQE+A +EK  LE+RLQ+          L   +++SDLEV QLK EIE+L+ ELQRAEGE
Sbjct: 296 EQESATTEKQNLEKRLQDES--------LGLHTSYSDLEVSQLKAEIEMLKLELQRAEGE 347

Query: 171 LEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           LEDRCW+PP GLQHWLQLTHEIENKAY  KK+ AEKQLQQAREA
Sbjct: 348 LEDRCWSPPAGLQHWLQLTHEIENKAYTHKKIAAEKQLQQAREA 391

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003335|ref|XP_002422698.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505520|gb|EEB09960.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/164 (62%), Positives = 130/164 (79%), Gaps = 5/164 (3%)

Query: 51  VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110
            KD +L TL+L AL  CW+ YRQ + S+ HLRRMMKDME L +AEL L +LQ+ELE  ++
Sbjct: 241 TKDIVLVTLLLGALVGCWWAYRQNKLSRHHLRRMMKDMESLHKAELALEDLQRELEHTKK 300

Query: 111 EQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGE 170
           E++N  +EK+ LER+L E +   GD   +K++  +SDLEV QLKQE+E+LR+ELQRAEGE
Sbjct: 301 ERQNVTTEKLNLERKLLEQE---GDGERMKTT--YSDLEVTQLKQEVEMLRSELQRAEGE 355

Query: 171 LEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           L+DRCWAPP GLQHWLQLTHEIENK Y+KK+L AEK+LQ AREA
Sbjct: 356 LQDRCWAPPAGLQHWLQLTHEIENKGYIKKRLAAEKKLQLAREA 399

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720373|ref|XP_001951196.2| PREDICTED: stromal interaction molecule homolog [Acyrthosiphon pisum]

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 132/170 (77%), Gaps = 2/170 (1%)

Query: 45  RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
           ++S +H+KD +L TL+L AL   WYVY Q +SS  HL+RMM+DMEGLQ+AE    +LQKE
Sbjct: 208 KDSVTHLKDLVLITLLLGALIGFWYVYNQNKSSTLHLKRMMRDMEGLQKAETAYEDLQKE 267

Query: 105 LERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164
           LE+A+Q QE   +EK  LE++LQE Q    ++S LKSS  +S+LE+ QLK EIE LR EL
Sbjct: 268 LEKAKQVQEFVITEKANLEKQLQEQQIKDENSSVLKSS--YSNLEISQLKTEIESLRGEL 325

Query: 165 QRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
            RAEGEL+DRCW PP GLQ WLQLTHE+ENK+Y+KKKL AEKQLQQAREA
Sbjct: 326 ARAEGELDDRCWTPPHGLQQWLQLTHEVENKSYIKKKLSAEKQLQQAREA 375

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424379|ref|XP_003493776.1| PREDICTED: stromal interaction molecule homolog [Bombus impatiens]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 126/168 (75%), Gaps = 9/168 (5%)

Query: 48  TSH-VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 106
           T H +KD +L TL       CWY YRQ++ S++HL RMMKDME L +AEL L +LQKELE
Sbjct: 234 TGHGIKDTVLITLFFGVCIGCWYAYRQRQDSKKHLHRMMKDMESLHKAELALEDLQKELE 293

Query: 107 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQR 166
           RAR EQE+  +EK  LE+RLQ+          +   +++SDLEV QLK EIE+L+ ELQR
Sbjct: 294 RARMEQESVTTEKQNLEKRLQDES--------VGLHASYSDLEVSQLKAEIEMLKVELQR 345

Query: 167 AEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           AEGELEDRCW+PP GLQHWLQLTHEIENKAY KKK+ AEKQLQQAREA
Sbjct: 346 AEGELEDRCWSPPSGLQHWLQLTHEIENKAYTKKKISAEKQLQQAREA 393

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0045073	570	Stim "Stromal interaction mole	0.718	0.282	0.570	6.4e-44
UNIPROTKB|E9PNJ4	512	STIM1 "Stromal interaction mol	0.736	0.322	0.394	2.9e-26
UNIPROTKB|F1SUZ4	685	STIM1 "Uncharacterized protein	0.736	0.240	0.394	6.1e-26
UNIPROTKB|G3X721	683	STIM1 "Stromal interaction mol	0.736	0.241	0.394	7.7e-26
UNIPROTKB|Q58CP9	683	STIM1 "Stromal interaction mol	0.736	0.241	0.394	7.7e-26
UNIPROTKB|Q13586	685	STIM1 "Stromal interaction mol	0.736	0.240	0.394	7.8e-26
UNIPROTKB|F1PIS1	685	STIM1 "Uncharacterized protein	0.736	0.240	0.394	7.8e-26
MGI|MGI:107476	685	Stim1 "stromal interaction mol	0.736	0.240	0.388	1.6e-25
RGD|1306831	685	Stim1 "stromal interaction mol	0.736	0.240	0.388	1.6e-25
UNIPROTKB|Q9P246	746	STIM2 "Stromal interaction mol	0.727	0.218	0.375	5e-24

FB|FBgn0045073 Stim "Stromal interaction molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/170 (57%), Positives = 119/170 (70%)

Query:    45 RNSTSHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKE 104
             R + +  KDY            CWY Y+Q +++++HLRRM +DMEGLQRAE  L  +QKE
Sbjct:   285 RETGTRWKDYILVTLLLSAIIGCWYAYQQNKNAKRHLRRMAQDMEGLQRAEQSLQEMQKE 344

Query:   105 LERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNEL 164
             LERAR EQEN A+EK+ LERRL+E       A  L SS+  SDLEV QLK+EIE+LRNEL
Sbjct:   345 LERARMEQENVATEKLDLERRLKE-------APTLSSSN--SDLEVQQLKKEIEMLRNEL 395

Query:   165 QRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
              RAE EL D CW+PPP LQ WLQ T+E+E+K + KK+  AEKQLQ AREA
Sbjct:   396 SRAEFELVDNCWSPPPQLQSWLQYTYELESKNHQKKRTSAEKQLQSAREA 445

GO:0007155 "cell adhesion" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0048763 "calcium-induced calcium release activity" evidence=IMP

GO:0032237 "activation of store-operated calcium channel activity" evidence=IMP

GO:0015279 "store-operated calcium channel activity" evidence=IMP

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0002115 "store-operated calcium entry" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|E9PNJ4 STIM1 "Stromal interaction molecule 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 2.9e-26, P = 2.9e-26
 Identities = 67/170 (39%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:    36 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 95

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:    96 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 155

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E
Sbjct:   156 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKE 205

GO:0006812 "cation transport" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1SUZ4 STIM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 302 (111.4 bits), Expect = 6.1e-26, P = 6.1e-26
 Identities = 67/170 (39%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query:   165 QRAEGELEDR-CWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E
Sbjct:   329 RKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKE 378

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005513 "detection of calcium ion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|G3X721 STIM1 "Stromal interaction molecule 1" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 67/170 (39%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   207 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 266

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   267 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 326

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E
Sbjct:   327 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKE 376

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005513 "detection of calcium ion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q58CP9 STIM1 "Stromal interaction molecule 1" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 67/170 (39%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   207 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 266

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   267 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 326

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E
Sbjct:   327 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKE 376

GO:0051924 "regulation of calcium ion transport" evidence=ISS

GO:0032237 "activation of store-operated calcium channel activity" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0005513 "detection of calcium ion" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0051010 "microtubule plus-end binding" evidence=ISS

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q13586 STIM1 "Stromal interaction molecule 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 7.8e-26, P = 7.8e-26
 Identities = 67/170 (39%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E
Sbjct:   329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKE 378

GO:0005874 "microtubule" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0051924 "regulation of calcium ion transport" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005513 "detection of calcium ion" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0032541 "cortical endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1PIS1 STIM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 301 (111.0 bits), Expect = 7.8e-26, P = 7.8e-26
 Identities = 67/170 (39%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E
Sbjct:   329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKE 378

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005513 "detection of calcium ion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:107476 Stim1 "stromal interaction molecule 1" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 66/170 (38%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AE+QL  A+E
Sbjct:   329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAERQLLVAKE 378

GO:0002115 "store-operated calcium entry" evidence=ISO

GO:0005246 "calcium channel regulator activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005513 "detection of calcium ion" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IMP

GO:0006816 "calcium ion transport" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0032237 "activation of store-operated calcium channel activity" evidence=ISO

GO:0032541 "cortical endoplasmic reticulum" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:2001256 "regulation of store-operated calcium entry" evidence=ISO

RGD|1306831 Stim1 "stromal interaction molecule 1" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 66/170 (38%), Positives = 100/170 (58%)

Query:    49 SHVKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 108
             +H+KD+            CW+ Y Q   S++H+++MMKD+EGL RAE  L +LQ+ L +A
Sbjct:   209 NHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKA 268

Query:   109 RQEQENAASEKIKLERRLQEHQAL-QGDASDLKSSSAFSDLEVCQLK---QEIELLRNEL 164
             ++E      EK+ LE++L++   L + +A  LK     ++ E  + K   +E+E +R  L
Sbjct:   269 QEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREAL 328

Query:   165 QRAEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             ++AE ELE    W  P  LQ WLQLTHE+E + Y  KK  AE+QL  A+E
Sbjct:   329 RKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAERQLLVAKE 378

GO:0002115 "store-operated calcium entry" evidence=IMP

GO:0005246 "calcium channel regulator activity" evidence=IMP

GO:0005509 "calcium ion binding" evidence=ISO;ISS

GO:0005513 "detection of calcium ion" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;ISS

GO:0006812 "cation transport" evidence=ISO

GO:0015279 "store-operated calcium channel activity" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=IDA

GO:0032237 "activation of store-operated calcium channel activity" evidence=ISO;ISS;IMP

GO:0032541 "cortical endoplasmic reticulum" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO;ISS

GO:0051924 "regulation of calcium ion transport" evidence=ISO;ISS

GO:2001256 "regulation of store-operated calcium entry" evidence=IMP

UNIPROTKB|Q9P246 STIM2 "Stromal interaction molecule 2" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 5.0e-24, P = 5.0e-24
 Identities = 63/168 (37%), Positives = 99/168 (58%)

Query:    51 VKDYXXXXXXXXXXXXCWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 110
             +KD+            CW+ Y Q ++S++H+ +MMKD+E LQ AE  L +LQ+ LE+A++
Sbjct:   215 MKDFILTVSIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQERLEKAQE 274

Query:   111 EQENAASEKIKLERRLQEH-QALQGDASDLKSSSAFSDLEVCQ---LKQEIELLRNELQR 166
             E  N A EK  LER++ +     + +A  L+     ++ E+ +    +QE+E +R  L++
Sbjct:   275 ENRNVAVEKQNLERKMMDEINYAKEEACRLRELREGAECELSRRQYAEQELEQVRMALKK 334

Query:   167 AEGELEDRC-WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQARE 213
             AE E E R  W+ P  LQ WLQLTHE+E + Y  K+  AE QL  A++
Sbjct:   335 AEKEFELRSSWSVPDALQKWLQLTHEVEVQYYNIKRQNAEMQLAIAKD 382

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005246 "calcium channel regulator activity" evidence=IMP

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP;IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0032237 "activation of store-operated calcium channel activity" evidence=IDA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0015279 "store-operated calcium channel activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83094	STIM_DROME	No assigned EC number	0.6	0.7187	0.2824	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
cd11722	92	cd11722, SOAR, STIM1 Orai1-activating region	6e-10
cd11722	92	cd11722, SOAR, STIM1 Orai1-activating region	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl|CDD|212596 cd11722, SOAR, STIM1 Orai1-activating region

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 6  MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDR 45
           AEKQLQ+A+EACEKLRKKRSS+ G+F   H  S+DDVD 
Sbjct: 22 DAEKQLQEAKEACEKLRKKRSSVFGSFRLAHSSSLDDVDN 61

STIM1 (stromal interaction module 1) is a metazoan transmembrane protein located in the endoplasmic reticulum (ER) membrane, which functions as a sensor for ER calcium ion levels and activates store-operated Ca2+ influx channels (SOCs), such as the Orai1 Ca2+ channel located in the plasma membrane. STIM1 has an N-terminal Ca-binding EF-hand domain, which is located in the ER lumen. Responding to the release of Ca2+ from the ER, STIM1 was found to aggregate near the plasma membrane and contact Orai1. This model describes a region near the C-terminus of STIM1, which has been shown to mediate the interaction with Orai1 and has been labeled SOAR (STIM1 Orai1-activating region). STIM1 has also been linked to sensing oxidative and temperature-variation stress and may play a rather general role in mediating calcium signaling in response to stress. Dimerization of STIM1 via the SOAR domain appears required for the activation of the Orai1 calcium channel. A model for STIM1 activation has been proposed, in which an inhibitory helix N-terminal to the SOAR domain prevents STIM1 clustering or aggregation, and in which conformational changes triggered by depletion of the calcium stores allow the clustering and activation of Orai1. Length = 92

>gnl|CDD|212596 cd11722, SOAR, STIM1 Orai1-activating region

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 182 LQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           LQ  LQLT+E+E + Y KKK  AEKQLQ+A+EA
Sbjct: 1   LQQLLQLTYELEMQYYNKKKQDAEKQLQEAKEA 33

STIM1 (stromal interaction module 1) is a metazoan transmembrane protein located in the endoplasmic reticulum (ER) membrane, which functions as a sensor for ER calcium ion levels and activates store-operated Ca2+ influx channels (SOCs), such as the Orai1 Ca2+ channel located in the plasma membrane. STIM1 has an N-terminal Ca-binding EF-hand domain, which is located in the ER lumen. Responding to the release of Ca2+ from the ER, STIM1 was found to aggregate near the plasma membrane and contact Orai1. This model describes a region near the C-terminus of STIM1, which has been shown to mediate the interaction with Orai1 and has been labeled SOAR (STIM1 Orai1-activating region). STIM1 has also been linked to sensing oxidative and temperature-variation stress and may play a rather general role in mediating calcium signaling in response to stress. Dimerization of STIM1 via the SOAR domain appears required for the activation of the Orai1 calcium channel. A model for STIM1 activation has been proposed, in which an inhibitory helix N-terminal to the SOAR domain prevents STIM1 clustering or aggregation, and in which conformational changes triggered by depletion of the calcium stores allow the clustering and activation of Orai1. Length = 92

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 72  RQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
            +  SS    RR ++++E  ++  E  +A L+K L   R+E E    E  +L + L+E  
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-- 723

Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
            L    S L+   A  + EV QL++ I  L  EL   E E+E
Sbjct: 724 -LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 19/145 (13%)

Query: 75  ESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQG 134
              ++   ++ +  E L   E  L  L++ELE    E E   +E  +LE RL+E +    
Sbjct: 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382

Query: 135 DASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIEN 194
                         +V QL+ +I  L NE++R E  LE         L+   +   + E 
Sbjct: 383 TLRS----------KVAQLELQIASLNNEIERLEARLER--------LEDRRERLQQ-EI 423

Query: 195 KAYVKKKLMAEKQLQQAREARFDRG 219
           +  +KK   AE +  QA     +  
Sbjct: 424 EELLKKLEEAELKELQAELEELEEE 448

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 75  ESSQQHLRRMMKDMEGLQ--RAEL--DLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
            S+++ L  + +++  LQ   AEL   LA LQ+E +  +QE     +E  +L++ L   +
Sbjct: 62  PSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIK 121

Query: 131 ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELE 172
            L  +A +L   +     E+ +LKQE E L  E +R +   +
Sbjct: 122 QLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 72  RQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 130
              E S     R ++D E  L + E ++  L  E+E   +E E     + KL     E +
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363

Query: 131 A----LQGDASDLKSSSAFSDLEVCQLKQEIELL---RNELQRAEGELEDR 174
                L+ +  ++    A +  E+   ++++E L    NEL+R    L++ 
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG4403|consensus	575		100.0
KOG4403|consensus	575		99.56
PRK10920	390	putative uroporphyrinogen III C-methyltransferase;	95.45
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	95.24
PRK11637	428	AmiB activator; Provisional	95.13
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	94.09
PF10828	110	DUF2570: Protein of unknown function (DUF2570); In	94.02
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	93.83
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	93.46
PRK09039	343	hypothetical protein; Validated	93.16
CHL00019	184	atpF ATP synthase CF0 B subunit	92.92
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	92.81
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.77
PF04375	372	HemX: HemX; InterPro: IPR007470 The majority of pr	92.47
PRK10780	165	periplasmic chaperone; Provisional	92.4
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	92.01
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	91.57
PRK08475	167	F0F1 ATP synthase subunit B; Validated	91.24
PRK06231	205	F0F1 ATP synthase subunit B; Validated	90.79
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.35
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	90.2
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	89.62
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	89.18
PRK11637	428	AmiB activator; Provisional	88.36
PF14584	151	DUF4446: Protein of unknown function (DUF4446)	88.11
PRK07352	174	F0F1 ATP synthase subunit B; Validated	88.1
PRK10884	206	SH3 domain-containing protein; Provisional	87.9
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	87.54
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.45
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	86.92
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	86.8
PF06210	108	DUF1003: Protein of unknown function (DUF1003); In	86.74
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	86.32
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	86.25
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.23
PRK09173	159	F0F1 ATP synthase subunit B; Validated	86.13
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	85.99
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	85.57
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	84.96
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.09
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	83.51
PRK12704	520	phosphodiesterase; Provisional	83.3
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	82.99
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.8
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	81.79
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	81.75
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	81.63
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	81.62
KOG0161|consensus	1930		81.53
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	81.3
PRK11677	134	hypothetical protein; Provisional	81.28
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.36
COG1422	201	Predicted membrane protein [Function unknown]	80.22

>KOG4403|consensus

Probab=100.00  E-value=5.4e-67  Score=492.84  Aligned_cols=177  Identities=47%  Similarity=0.699  Sum_probs=170.1

Q ss_pred             ccccccCC-----CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy11615         37 GKSIDDVD-----RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE  111 (224)
Q Consensus        37 ~~s~D~VD-----Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee  111 (224)
                      ++++|.|-     ++++||+|||+|+||||||||||||||+||++||.|+++||+|||+||+|||+|+|||++|++||+|
T Consensus       195 LkalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e  274 (575)
T KOG4403|consen  195 LKALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE  274 (575)
T ss_pred             hhhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46667543     6888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCCChhhHHHHhhHH
Q psy11615        112 QENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDR-CWAPPPGLQHWLQLTH  190 (224)
Q Consensus       112 ~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~-~ws~P~~LQ~wLQlT~  190 (224)
                      |++|++||++||++|++       |+||+++|+|.+|+.++  .||||||.+|++||++|+++ ||+||++||+|||+||
T Consensus       275 ~rnvavek~~lerkl~e-------a~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~  345 (575)
T KOG4403|consen  275 QRNVAVEKLDLERKLDE-------APRLSELREGVENETSR--KELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTH  345 (575)
T ss_pred             hhchhhhhhhHHHHHhh-------hhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            99999999999999997       99999999999999999  69999999999999999999 8999999999999999


Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615        191 EIENKAYVKKKLMAEKQLQQAREARFDRGKCI  222 (224)
Q Consensus       191 EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~  222 (224)
                      |+||+|||+|||+|||||..|||+|||||||-
T Consensus       346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKr  377 (575)
T KOG4403|consen  346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR  377 (575)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999984

>KOG4403|consensus

Probab=99.56  E-value=4e-16  Score=148.92  Aligned_cols=55  Identities=44%  Similarity=0.539  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHHHHHHhcccccccchhhhhcccccccCC-----------------CCCCchhHHHHHHHHH
Q psy11615          6 MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVD-----------------RNSTSHVKDYILGTLI   60 (224)
Q Consensus         6 ~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~~s~D~VD-----------------Rer~~~wKDi~Lv~sl   60 (224)
                      +|||||.+|||+|||||||||||||+||+|||+++||||                 |++++||++|+-++.+
T Consensus       358 naekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~lcGf  429 (575)
T KOG4403|consen  358 NAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESLCGF  429 (575)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            799999999999999999999999999999999999999                 6999999999987654

>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional

Probab=95.45  E-value=0.25  Score=47.41  Aligned_cols=77  Identities=17%  Similarity=0.173  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhc--hHHHHHHHHHhhHhH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11615         52 KDYILGTLILIALTICWYVYRQKES--SQQHLRRMMKDMEGL--------QRAELDLANLQKELERARQEQENAASEKIK  121 (224)
Q Consensus        52 KDi~Lv~slviavgGcWfAy~Qnr~--Sk~hl~~Mmkdle~L--------q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~  121 (224)
                      .=..++++|++|+||++|+|.|-..  -...+..+...++.+        +..+..+..+...+..++..+......-+.
T Consensus        38 ~l~~~aili~la~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~  117 (390)
T PRK10920         38 VLSAVAIAIALAAGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDE  117 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566667788888887754333  222333344444443        222223333334444444444444444444


Q ss_pred             HHHHHHH
Q psy11615        122 LERRLQE  128 (224)
Q Consensus       122 LE~kl~~  128 (224)
                      |+.++.+
T Consensus       118 Lq~~~~~  124 (390)
T PRK10920        118 LQQKVAT  124 (390)
T ss_pred             HHHHHHH
Confidence            5555543

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=95.24  E-value=0.027  Score=48.48  Aligned_cols=58  Identities=29%  Similarity=0.522  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy11615         97 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEG  169 (224)
Q Consensus        97 sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~  169 (224)
                      ||+||..+|..|=|       ...=||.+|++....+.+.+||++       |++.|++|| .||..+..+++
T Consensus         1 SLeD~EsklN~AIE-------RnalLE~ELdEKE~L~~~~QRLkD-------E~RDLKqEl-~V~ek~~~~~~   58 (166)
T PF04880_consen    1 SLEDFESKLNQAIE-------RNALLESELDEKENLREEVQRLKD-------ELRDLKQEL-IVQEKLRKANR   58 (166)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCH---------------------------------
T ss_pred             CHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHhhhhhc
Confidence            68999999999877       334567777554567778889988       788889999 88887766543

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PRK11637 AmiB activator; Provisional

Probab=95.13  E-value=1.4  Score=41.52  Aligned_cols=73  Identities=11%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy11615         45 RNSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLER  124 (224)
Q Consensus        45 Rer~~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~  124 (224)
                      +|+.....-++++++|++++.++-| +-..-..+..+.+.-+          .+..+++++...+.+...+..+..+|++
T Consensus        14 ~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~l~~l~~----------qi~~~~~~i~~~~~~~~~~~~~l~~l~~   82 (428)
T PRK11637         14 KPRRFAIRPILYASVLSAGVLLCAF-SAHASDNRDQLKSIQQ----------DIAAKEKSVRQQQQQRASLLAQLKKQEE   82 (428)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHhhh-cccchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556667777666655555422 2222222333333322          3344444444444444444444445554


Q ss_pred             HHHH
Q psy11615        125 RLQE  128 (224)
Q Consensus       125 kl~~  128 (224)
                      ++.+
T Consensus        83 qi~~   86 (428)
T PRK11637         83 AISQ   86 (428)
T ss_pred             HHHH
Confidence            4444

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=94.09  E-value=0.82  Score=46.05  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhh-hhchHHHHHHHHHhhHhH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11615         51 VKDYILGTLILIALTICWYVYRQ-KESSQQHLRRMMKDMEGL--------QRAELDLANLQKELERARQEQENAASEKIK  121 (224)
Q Consensus        51 wKDi~Lv~slviavgGcWfAy~Q-nr~Sk~hl~~Mmkdle~L--------q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~  121 (224)
                      +.=..++++|++|+||.||..+| +..-+..|.+...+.+.+        ..++....+++.++.....+.......-+.
T Consensus       324 ~~~~~~~l~~~~~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~  403 (656)
T PRK06975        324 AALWFVVVVLACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQA  403 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345566777777777664333 555555666655554333        235556777888888777777676666677


Q ss_pred             HHHHHHH
Q psy11615        122 LERRLQE  128 (224)
Q Consensus       122 LE~kl~~  128 (224)
                      |++.+.+
T Consensus       404 L~~~~~~  410 (656)
T PRK06975        404 LEQQYQD  410 (656)
T ss_pred             HHHHHHH
Confidence            7777765

>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT

Probab=94.02  E-value=2.4  Score=33.43  Aligned_cols=105  Identities=22%  Similarity=0.292  Sum_probs=55.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy11615         50 HVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH  129 (224)
Q Consensus        50 ~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~  129 (224)
                      .|.-+.+++++|+..|.+|+.+.+       |.++-.+.+.+...=....+.-++|..+-.+++.+..+=+..|++++. 
T Consensus         3 ~~~~~~l~~lvl~L~~~l~~qs~~-------i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~-   74 (110)
T PF10828_consen    3 KYIYIALAVLVLGLGGWLWYQSQR-------IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQ-   74 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            566777777766666667755432       455555555544444444444555555444455554443333333332 


Q ss_pred             hhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcC--CCCChhhHHHHhhHH
Q psy11615        130 QALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRC--WAPPPGLQHWLQLTH  190 (224)
Q Consensus       130 ~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~--ws~P~~LQ~wLQlT~  190 (224)
                                                +.+..|..++.|..  .+.|  -.+|.+.---|+.-|
T Consensus        75 --------------------------~~e~~~e~ik~~lk--~d~Ca~~~~P~~V~d~L~~~~  109 (110)
T PF10828_consen   75 --------------------------QSEERRESIKTALK--DDPCANTAVPDAVIDSLRRLH  109 (110)
T ss_pred             --------------------------HHHHHHHHHHHHHc--cCccccCCCCHHHHHHHHHhh
Confidence                                      33444445555544  3445  446777666565544

3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=93.83  E-value=2.2  Score=35.75  Aligned_cols=34  Identities=12%  Similarity=0.131  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhh
Q psy11615         55 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDM   88 (224)
Q Consensus        55 ~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdl   88 (224)
                      .+++++++||+|.||...++++.+.-+...-+.+
T Consensus         2 ~~i~l~~~a~~~~~~~~~~~~~l~~~~~~a~~~~   35 (135)
T TIGR03495         2 LLIVLLGLLVAGLGWQSQRLRNARADLERANRVL   35 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888887777666666555

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=93.46  E-value=2.3  Score=33.54  Aligned_cols=69  Identities=25%  Similarity=0.479  Sum_probs=41.0

Q ss_pred             HHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q psy11615         66 ICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAF  145 (224)
Q Consensus        66 GcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~  145 (224)
                      ..|+...-.+.++..+..+..+++...+          |+..              +|.+++.             + ++
T Consensus        22 ~~~~~l~~~~a~~~~~~~l~~~~~~~~~----------Rl~~--------------lE~~l~~-------------L-Pt   63 (106)
T PF10805_consen   22 IFWLWLRRTYAKREDIEKLEERLDEHDR----------RLQA--------------LETKLEH-------------L-PT   63 (106)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHH----------HHHH--------------HHHHHHh-------------C-CC
Confidence            3344344445556777776666654432          4443              4555544             2 33


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615        146 SDLEVCQLKQEIELLRNELQRAEGELED  173 (224)
Q Consensus       146 sd~Els~l~eELe~vR~aL~~AE~eLe~  173 (224)
                      .+ ++.+|+-+|..+|+.++.-+..+..
T Consensus        64 ~~-dv~~L~l~l~el~G~~~~l~~~l~~   90 (106)
T PF10805_consen   64 RD-DVHDLQLELAELRGELKELSARLQG   90 (106)
T ss_pred             HH-HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            44 6777878888888877777776653

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK09039 hypothetical protein; Validated

Probab=93.16  E-value=3  Score=38.93  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615        149 EVCQLKQEIELLRNELQRAEGELED  173 (224)
Q Consensus       149 Els~l~eELe~vR~aL~~AE~eLe~  173 (224)
                      .|.+|++||+.+|.+|...+.+|.+
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~  162 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDA  162 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999988888877754

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=92.92  E-value=4.8  Score=33.94  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhhhhh----hchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--
Q psy11615         58 TLILIALTICWYVYRQK----ESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--  130 (224)
Q Consensus        58 ~slviavgGcWfAy~Qn----r~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--  130 (224)
                      -.+|+.++..||+|.==    ..-+..|..-+.+.+.. ..|+..+.+.+++|+.|+.+......+-+.-=+++++.+  
T Consensus        33 nflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~  112 (184)
T CHL00019         33 NLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLIN  112 (184)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555211    11234566666666665 667777888888888888877776655544444444432  


Q ss_pred             hhhcccccccc-cccchhHHHHHHHHHH--HHHHHHHHHHHhhhhh
Q psy11615        131 ALQGDASDLKS-SSAFSDLEVCQLKQEI--ELLRNELQRAEGELED  173 (224)
Q Consensus       131 ~ak~ea~rl~~-~r~~sd~Els~l~eEL--e~vR~aL~~AE~eLe~  173 (224)
                      .|+.++.++.. .+..-+.|..+...+|  +....+...|++-|..
T Consensus       113 ~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~  158 (184)
T CHL00019        113 QAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNS  158 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57777776664 3333333333333333  2334466677776654

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=92.81  E-value=4.6  Score=33.05  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHHHHHHHHH-HHhh------hhhhchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy11615         49 SHVKDYILGTLILIALTIC-WYVY------RQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKI  120 (224)
Q Consensus        49 ~~wKDi~Lv~slviavgGc-WfAy------~Qnr~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~  120 (224)
                      ++|-=+.-++.++|.++.+ +|+|      ...|  +..|...+.+.+.. ..|+..+.+.+.+|+.|+.+-.....+-.
T Consensus         4 ~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R--~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~   81 (159)
T PRK13461          4 NIPTIIATIINFIILLLILKHFFFDKIKAVIDSR--QSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK   81 (159)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555555 3333      2222  34556666666555 56777788888888888877555544322


Q ss_pred             HHHHHHHHH-h-hhhcccccccc-cccchhHHHHHHHHHH--HHHHHHHHHHHhhhhh
Q psy11615        121 KLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQLKQEI--ELLRNELQRAEGELED  173 (224)
Q Consensus       121 ~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l~eEL--e~vR~aL~~AE~eLe~  173 (224)
                      .-=++.+++ + .|+.++.++.. .+..-+.|..+...+|  +.+.-++.-|++-|..
T Consensus        82 ~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~  139 (159)
T PRK13461         82 SKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEE  139 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222233332 2 46777776664 2222222222222222  2233356666665543

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.77  E-value=0.58  Score=41.79  Aligned_cols=52  Identities=31%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11615        117 SEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGEL  171 (224)
Q Consensus       117 ~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eL  171 (224)
                      .||..|+.++.+   +..++.+|..-..-.+-|..+|..++..+|.++.+|..+|
T Consensus        75 eEk~~Le~e~~e---~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L  126 (246)
T PF00769_consen   75 EEKEQLEQELRE---AEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL  126 (246)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444   5555566665445556677778888999999999887776

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2

Probab=92.47  E-value=3.8  Score=38.50  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             HHHHHHHHhhhhhhchHHHHHHHHHhhHhHHH
Q psy11615         62 IALTICWYVYRQKESSQQHLRRMMKDMEGLQR   93 (224)
Q Consensus        62 iavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~   93 (224)
                      +|+||.||...|....+..+..+...+..+..
T Consensus        43 lg~~~~~~~~~q~~~~~~~~~~L~~ql~~~~~   74 (372)
T PF04375_consen   43 LGAGGWYWQQQQLQQLQQQLQALQQQLQQLQQ   74 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445445555556666677666666643

1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].

>PRK10780 periplasmic chaperone; Provisional

Probab=92.40  E-value=4.5  Score=33.59  Aligned_cols=49  Identities=10%  Similarity=0.121  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHH
Q psy11615         51 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLA   99 (224)
Q Consensus        51 wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~   99 (224)
                      ||-|++++++.+++.|.+.|..+.|-.-..+.+.+..+..-+.+...|+
T Consensus         1 Mkk~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~~~~le   49 (165)
T PRK10780          1 MKKWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGVSKQLE   49 (165)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHHHHHHH
Confidence            4567777777777778888888889999999999998888777655443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=92.01  E-value=5.4  Score=31.95  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHh-----hhhhhchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy11615         57 GTLILIALTICWYV-----YRQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ  130 (224)
Q Consensus        57 v~slviavgGcWfA-----y~Qnr~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~  130 (224)
                      .|+|+++|.+.|++     +..+|  +..|...+.+.+.. ..|+..+.+.+++|+.|+.+-..-..+-..-=.++.+++
T Consensus         4 ~Flil~~il~~~~~~pi~~~l~~R--~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~   81 (147)
T TIGR01144         4 SFILLVWFCMKYVWPPLAKAIETR--QKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEA   81 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555543     22222  44566667776666 667777888888888888765554433322223333322


Q ss_pred             --hhhccccccc
Q psy11615        131 --ALQGDASDLK  140 (224)
Q Consensus       131 --~ak~ea~rl~  140 (224)
                        .++.++.++-
T Consensus        82 ~~~a~~e~~~~~   93 (147)
T TIGR01144        82 KAEAREEREKIK   93 (147)
T ss_pred             HHHHHHHHHHHH
Confidence              3555555444

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=91.57  E-value=7.5  Score=33.49  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy11615         55 ILGTLILIALTICWYVY   71 (224)
Q Consensus        55 ~Lv~slviavgGcWfAy   71 (224)
                      ..++++++|+|++||..
T Consensus         5 ~~i~~~~vG~~~G~~~~   21 (201)
T PF12072_consen    5 IAIVALIVGIGIGYLVR   21 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455555555555553

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=91.24  E-value=6  Score=33.19  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS  141 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~  141 (224)
                      +..|..-+.+.+.. ..|+..+.+.++.|..|+.+-.....+-..-=++.++.+  .++.++.++..
T Consensus        55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~  121 (167)
T PRK08475         55 INKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIK  121 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666665 667777777788888887776666555444444444432  46666666554

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=90.79  E-value=5  Score=34.93  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE  118 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E  118 (224)
                      +..|...+.+.+.. ..|+..+.+.+++|++|+.+-.....+
T Consensus        81 ~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~  122 (205)
T PRK06231         81 KELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ  122 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666676666 667777888888888888766555443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.35  E-value=1.3  Score=33.00  Aligned_cols=55  Identities=35%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615        152 QLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI  222 (224)
Q Consensus       152 ~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~  222 (224)
                      +|+.++..+|.-|..|.+.++.                |+.+++..+.-|-.+..+|..|.+.|.+|+-.+
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~----------------~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~   56 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSV----------------HEIENKRLRRERDSAERQLGDAYEENNKLKEEN   56 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999998875                789999999999999999999999999987543

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=90.20  E-value=9.9  Score=31.74  Aligned_cols=64  Identities=14%  Similarity=0.209  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS  141 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~  141 (224)
                      +..|...+.+.+.. ..|+..+.+.+.+|+.|+.+-.....+-..-=++.+++ + .|+.++.++..
T Consensus        51 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~  117 (175)
T PRK14472         51 EKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIA  117 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666665 56666777777777777776655544332222333332 2 46666665553

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=89.62  E-value=14  Score=33.09  Aligned_cols=96  Identities=13%  Similarity=0.135  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc-cccchhHHHHHH
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQL  153 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l  153 (224)
                      +..|...+.+-+.. ..|++.+.+.+++++.++.+......+-..-=++.+++ + .|+.++.+++. .+..-+.|..+.
T Consensus        38 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a  117 (250)
T PRK14474         38 QQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEF  117 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666655 56667777777777777766555433322222333332 2 57777777775 323333333333


Q ss_pred             HHHH--HHHHHHHHHHHhhhhh
Q psy11615        154 KQEI--ELLRNELQRAEGELED  173 (224)
Q Consensus       154 ~eEL--e~vR~aL~~AE~eLe~  173 (224)
                      ..+|  +....++.-|++-|.+
T Consensus       118 ~~~L~~~v~~la~~~A~kiL~~  139 (250)
T PRK14474        118 FKALQQQTGQQMVKIIRAALAD  139 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            2333  2233466666665543

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=89.18  E-value=3.2  Score=32.57  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=14.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615        105 LERARQEQENAASEKIKLERRLQE  128 (224)
Q Consensus       105 Le~aqee~~~v~~EK~~LE~kl~~  128 (224)
                      .++.++|++...+||.--|.+++.
T Consensus        32 ~~kL~~en~qlk~Ek~~~~~qvkn   55 (87)
T PF10883_consen   32 NAKLQKENEQLKTEKAVAETQVKN   55 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666666666666665

>PRK11637 AmiB activator; Provisional

Probab=88.36  E-value=7.7  Score=36.62  Aligned_cols=35  Identities=11%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615         94 AELDLANLQKELERARQEQENAASEKIKLERRLQE  128 (224)
Q Consensus        94 AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~  128 (224)
                      .++.+.+++++++..+.+...+..+..+++.++.+
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~   79 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK   79 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555544

>PF14584 DUF4446: Protein of unknown function (DUF4446)

Probab=88.11  E-value=4.2  Score=34.29  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615         54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE  128 (224)
Q Consensus        54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~  128 (224)
                      +.+++++|++++.+.+.+..-++-+..-..+|+..++- .-|.-|.+...+++..+++......+=..++.+++.
T Consensus         5 i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   78 (151)
T PF14584_consen    5 IGLLVLVIILLILIIILNIKLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN   78 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556667777777777777777888888898877664 557778888888888888777777777777777765

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=88.10  E-value=14  Score=30.77  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc-cccchhHHHHHHH
Q psy11615         79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQLK  154 (224)
Q Consensus        79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l~  154 (224)
                      ..|...+.+.+.+ ..|+..+.+.+++|+.|+.+-..-..+-..-=++++++ . .++.++.++.. .+..-+.|..+..
T Consensus        53 ~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~  132 (174)
T PRK07352         53 EAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVI  132 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555 56677778888888888776655544333222333332 2 46666666554 2222222333322


Q ss_pred             HHH--HHHHHHHHHHHhhhhh
Q psy11615        155 QEI--ELLRNELQRAEGELED  173 (224)
Q Consensus       155 eEL--e~vR~aL~~AE~eLe~  173 (224)
                      .+|  +.+..++..|++-|..
T Consensus       133 ~~l~~qi~~la~~~A~kil~~  153 (174)
T PRK07352        133 AQLRREAAELAIAKAESQLPG  153 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333  2233466677776654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.90  E-value=3.8  Score=36.13  Aligned_cols=72  Identities=14%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy11615         89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAE  168 (224)
Q Consensus        89 e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE  168 (224)
                      +.|...|+.+.+++.+|..++.+..   .++..+.+++.+   +......|       +.+.++|++||..++..+..++
T Consensus        93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~---~~~~~~~L-------~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQ---SDSVINGL-------KEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666777777777777665433   222333333332   11111112       2355666777777777777776


Q ss_pred             hhhhh
Q psy11615        169 GELED  173 (224)
Q Consensus       169 ~eLe~  173 (224)
                      .++.+
T Consensus       160 ~~~~~  164 (206)
T PRK10884        160 LQLDD  164 (206)
T ss_pred             HHHHH
Confidence            66654

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=87.54  E-value=4.5  Score=40.16  Aligned_cols=40  Identities=20%  Similarity=0.325  Sum_probs=23.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615         89 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE  128 (224)
Q Consensus        89 e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~  128 (224)
                      ..|.-++....+|+++|+..+.|-+......+++|+++++
T Consensus        69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIke  108 (475)
T PRK13729         69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEK  108 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            3445555567777777777765555444555555555543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.45  E-value=5.6  Score=36.55  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q psy11615        151 CQLKQEIELLRNELQRAEGELE  172 (224)
Q Consensus       151 s~l~eELe~vR~aL~~AE~eLe  172 (224)
                      ..++++...+..++..|++-++
T Consensus       247 ~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  247 EELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455555555555555554

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=86.92  E-value=21  Score=31.49  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhcccccccc-cccchhHHHHHH
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLKS-SSAFSDLEVCQL  153 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~~-~r~~sd~Els~l  153 (224)
                      +..|...+.+-+.. +.|+..+.+.+.+|+.|+.+...-..+-..-=++.++. + .|+.++.++.. .+..-+.|..+.
T Consensus        38 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a  117 (246)
T TIGR03321        38 EKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL  117 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666 45777777777788877776655544322222333332 2 57777777664 333333333333


Q ss_pred             HHHH--HHHHHHHHHHHhhhhh
Q psy11615        154 KQEI--ELLRNELQRAEGELED  173 (224)
Q Consensus       154 ~eEL--e~vR~aL~~AE~eLe~  173 (224)
                      .++|  +.+..++..|++-|..
T Consensus       118 ~~~l~~ei~~la~~~A~kil~~  139 (246)
T TIGR03321       118 SDELRRRTGAEVFAIARKVLTD  139 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            2222  2233466667765543

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=86.80  E-value=18  Score=30.47  Aligned_cols=41  Identities=12%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE  118 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E  118 (224)
                      +..|...+.|-+.+ ..|+..+.+.+++|+.|+.+-+....+
T Consensus        60 ~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~  101 (184)
T PRK13455         60 AEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA  101 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777 778888888888888888776655443

>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=86.74  E-value=7.8  Score=31.10  Aligned_cols=65  Identities=15%  Similarity=0.120  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615         54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE  118 (224)
Q Consensus        54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~E  118 (224)
                      +-+++|++-++-.-..-..|||-+...=.+.-.|.+--.+||...+++..++..-.+.......+
T Consensus        38 Lnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~  102 (108)
T PF06210_consen   38 LNLVLSLEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLER  102 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            44677777788888888999999999999999999999999999999999999988877666654

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=86.32  E-value=44  Score=36.80  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy11615         49 SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE  128 (224)
Q Consensus        49 ~~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~  128 (224)
                      ....++.-.+-.+-.|.++|=.|.+.. .......+...-..+..+...+.++..+++.++++......+...||+++..
T Consensus       237 ~~le~l~~~~~~l~~i~~~y~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~  315 (1353)
T TIGR02680       237 DELERLEALERALRNFLQRYRRYARTM-LRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADA  315 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666677777888888888887632 2333344444434444444444444444444444444444444444443333


Q ss_pred             Hhhhhcccccccccccch-hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhH
Q psy11615        129 HQALQGDASDLKSSSAFS-DLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKK  201 (224)
Q Consensus       129 ~~~ak~ea~rl~~~r~~s-d~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk  201 (224)
                         .+.+...|+.+..+. -.++.++++++.++...+..++..+...    ...+.+.-+-..+.+-..|...+
T Consensus       316 ---l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a----~~~~e~~~~~~~~~~~r~~~~~~  382 (1353)
T TIGR02680       316 ---LRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREA----ESRLEEERRRLDEEAGRLDDAER  382 (1353)
T ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence               222223333322211 1133344455555555555555444321    33344444444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=86.25  E-value=25  Score=32.99  Aligned_cols=70  Identities=20%  Similarity=0.374  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhhhhhc-----------hHHHHHHHHHhhHhHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy11615         59 LILIALTICWYVYRQKES-----------SQQHLRRMMKDMEGLQ------RAELDLANLQKELERARQEQENAASEKIK  121 (224)
Q Consensus        59 slviavgGcWfAy~Qnr~-----------Sk~hl~~Mmkdle~Lq------~AE~sl~dlQ~~Le~aqee~~~v~~EK~~  121 (224)
                      .+|+..+|.||++.||--           +=..|+.=|++|...+      +++.|+.+.++.+++.+.+-.++..+-.+
T Consensus        27 Gl~ml~AgA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~  106 (301)
T PF06120_consen   27 GLVMLGAGAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN  106 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555788999988742           1223445566665543      56777888888888888877777666666


Q ss_pred             HHHHHHH
Q psy11615        122 LERRLQE  128 (224)
Q Consensus       122 LE~kl~~  128 (224)
                      ++..+.+
T Consensus       107 y~~~~~~  113 (301)
T PF06120_consen  107 YQQQLAE  113 (301)
T ss_pred             HHHHHhc
Confidence            6665554

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.23  E-value=18  Score=30.02  Aligned_cols=7  Identities=0%  Similarity=-0.415  Sum_probs=2.6

Q ss_pred             HHHHHHh
Q psy11615         64 LTICWYV   70 (224)
Q Consensus        64 vgGcWfA   70 (224)
                      ++|.-+.
T Consensus        54 ~~g~~~~   60 (191)
T PF04156_consen   54 SLGLLCL   60 (191)
T ss_pred             HHHHHHH
Confidence            3333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=86.13  E-value=16  Score=29.87  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE  118 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E  118 (224)
                      +..|...+.+-+.+ ..|+..+.+.+.+|+.|+.+-.....+
T Consensus        35 ~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~   76 (159)
T PRK09173         35 ADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAA   76 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777 778888888888888888776665443

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=85.99  E-value=19  Score=29.99  Aligned_cols=97  Identities=12%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHhhh--hh--hchHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615         44 DRNSTSHVKDYILGTLILIALTICWYVYR--QK--ESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE  118 (224)
Q Consensus        44 DRer~~~wKDi~Lv~slviavgGcWfAy~--Qn--r~Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E  118 (224)
                      |.+...+|.=+.+++++++.+.. .|+|.  .+  ..-+..|...+.+-+.. ..|+..+.+.+++|+.|+.+-..-..+
T Consensus         6 ~~~~~~~w~~i~f~il~~iL~~~-k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~   84 (167)
T PRK14475          6 NLSNPEFWVGAGLLIFFGILIAL-KVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA   84 (167)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456789766666665554422 33331  11  12245677778888777 778888899999999988876665443


Q ss_pred             HHHHHHHHHHHh--hhhcccccccc
Q psy11615        119 KIKLERRLQEHQ--ALQGDASDLKS  141 (224)
Q Consensus       119 K~~LE~kl~~~~--~ak~ea~rl~~  141 (224)
                      -..-=++..+++  .++.++.++..
T Consensus        85 A~~~a~~~~~~~~~~A~~ea~~~~~  109 (167)
T PRK14475         85 AKADARRMEAEAKEKLEEQIKRRAE  109 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233322  35556665553

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=85.57  E-value=3.1  Score=33.80  Aligned_cols=48  Identities=13%  Similarity=0.176  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615         56 LGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELER  107 (224)
Q Consensus        56 Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~  107 (224)
                      ++.+||++|+|+++...=+++. .+..++-+.|+   .++..|.+-+.++..
T Consensus         3 ~i~lvvG~iiG~~~~r~~~~~~-~~q~~l~~eL~---~~k~el~~yk~~V~~   50 (128)
T PF06295_consen    3 IIGLVVGLIIGFLIGRLTSSNQ-QKQAKLEQELE---QAKQELEQYKQEVND   50 (128)
T ss_pred             HHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            4444444445555444433333 33344444443   455556655555554

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=84.96  E-value=22  Score=29.83  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-h-hhhccccccc
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEH-Q-ALQGDASDLK  140 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~-~-~ak~ea~rl~  140 (224)
                      +..|...+.+.+.. ..|+..+.+.+++|..|+.+-.....+-..-=+++++. + .++.++.++.
T Consensus        51 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~  116 (173)
T PRK13453         51 ERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMI  116 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666555 56677777777778777776655544322222223332 2 4666666554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.09  E-value=28  Score=30.40  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHH---hhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615        150 VCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWL---QLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI  222 (224)
Q Consensus       150 ls~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wL---QlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~  222 (224)
                      ...|..+|+.+...+..+++.+..        |.+=|   .-+|--++...+.|-..|...+..+.+.++.+..+|
T Consensus       120 ReeL~~kL~~~~~~l~~~~~ki~~--------Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEKEKKIQE--------LEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567888888888888876654        33323   335667777888899999999999999999988765

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=83.51  E-value=20  Score=28.37  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHH
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENA  115 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v  115 (224)
                      +..|...+.+-+.+ ..|+..+.+.+++|+.|+.+-..-
T Consensus        38 ~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i   76 (140)
T PRK07353         38 EDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAV   76 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666 667777777777777777765444

>PRK12704 phosphodiesterase; Provisional

Probab=83.30  E-value=32  Score=34.17  Aligned_cols=16  Identities=25%  Similarity=0.214  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHhhcccc
Q psy11615        207 QLQQAREARFDRGKCI  222 (224)
Q Consensus       207 QL~~AkE~~EKikK~~  222 (224)
                      ....|++.|++.-+.|
T Consensus       178 ~~~~~~~~a~~~a~~i  193 (520)
T PRK12704        178 IEEEAKEEADKKAKEI  193 (520)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445666666654443

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=82.99  E-value=26  Score=29.22  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615         78 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS  141 (224)
Q Consensus        78 k~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~  141 (224)
                      +..|..-+.+.+.+ ..|+..+.+.+++|+.|+.+-.....+-..-=+++++++  .++.++.++..
T Consensus        49 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~  115 (173)
T PRK13460         49 ASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD  115 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666 567777888888888887766655443222223333332  46666665554

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.80  E-value=26  Score=29.07  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy11615         91 LQRAELDLANLQKELERARQEQENAAS  117 (224)
Q Consensus        91 Lq~AE~sl~dlQ~~Le~aqee~~~v~~  117 (224)
                      +...++-+..+++++..-++...+...
T Consensus        83 ~~~~~~~l~~l~~el~~l~~~~~~~~~  109 (191)
T PF04156_consen   83 LSELQQQLQQLQEELDQLQERIQELES  109 (191)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=81.79  E-value=56  Score=32.22  Aligned_cols=156  Identities=22%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhhhhhhchHH-HHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccc
Q psy11615         59 LILIALTICWYVYRQKESSQQ-HLRRMMKDM-EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDA  136 (224)
Q Consensus        59 slviavgGcWfAy~Qnr~Sk~-hl~~Mmkdl-e~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea  136 (224)
                      ..+-.+-+=|+.|..++.... ..++.+.++ ..|.++...|.+....|+++..+-.+...-=..|..+|..   .+.+-
T Consensus       249 ~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~---~K~el  325 (522)
T PF05701_consen  249 AELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEK---EKEEL  325 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            334444455666665332221 112222222 2357777777777777877777766665544445444444   56666


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHH-hhHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q psy11615        137 SDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWL-QLTHEIENKAYVKKKLMAEKQLQQAREAR  215 (224)
Q Consensus       137 ~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wL-QlT~EvE~q~y~~Kk~~AekQL~~AkE~~  215 (224)
                      .+++.....+...++.|+.||..+|..|.-+...-.. .-..|..|..=| |++-|.|.  .......+...+..++..+
T Consensus       326 ~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~-~k~~~~~l~~~Lqql~~Eae~--Ak~ea~~~~~E~~~~k~E~  402 (522)
T PF05701_consen  326 ERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK-AKEAMSELPKALQQLSSEAEE--AKKEAEEAKEEVEKAKEEA  402 (522)
T ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            6666655566778888999999999988776543332 223333333333 23444332  2344444444555555555


Q ss_pred             Hhhcc
Q psy11615        216 FDRGK  220 (224)
Q Consensus       216 EKikK  220 (224)
                      +..+-
T Consensus       403 e~~ka  407 (522)
T PF05701_consen  403 EQTKA  407 (522)
T ss_pred             HHHHH
Confidence            55443

Several sequences in this family are described as being myosin heavy chain-like.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=81.75  E-value=19  Score=31.43  Aligned_cols=42  Identities=38%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             hhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11615        132 LQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELED  173 (224)
Q Consensus       132 ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~  173 (224)
                      .+..+.-+....+..|-|+++++.+...+-.++..+|-++++
T Consensus       143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~  184 (190)
T PF05266_consen  143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS  184 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444566778889888888888888888888876

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=81.63  E-value=28  Score=28.61  Aligned_cols=63  Identities=13%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhcccccccc
Q psy11615         79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ--ALQGDASDLKS  141 (224)
Q Consensus        79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~--~ak~ea~rl~~  141 (224)
                      ..|...+.+.+.. ..|+..+.+.+++|..|+.+......+-+.-=+++.+++  .|+.++.++..
T Consensus        42 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~  107 (164)
T PRK14471         42 DSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIE  107 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566555 566777788888888888876666554333333333332  46666665553

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.62  E-value=22  Score=27.38  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=27.7

Q ss_pred             HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11615         79 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE  118 (224)
Q Consensus        79 ~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~E  118 (224)
                      ..|...+.+.+.+ ..|+.-+.+..++|..|+.+-.....+
T Consensus        33 ~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~   73 (132)
T PF00430_consen   33 AKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEE   73 (132)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777776 667777888888888887766555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>KOG0161|consensus

Probab=81.53  E-value=24  Score=40.62  Aligned_cols=59  Identities=27%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615        151 CQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC  221 (224)
Q Consensus       151 s~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~  221 (224)
                      .+++.|++.++.+|..||.+|+.-     +.-.    +..+++   .+..|..++..+...-|+.|..||.
T Consensus      1522 r~le~e~~elQ~aLeElE~~le~e-----E~~~----lr~~~~---~~~~r~e~er~l~ek~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1522 RRLEQEKEELQAALEELEAALEAE-----EDKK----LRLQLE---LQQLRSEIERRLQEKDEEIEELRKN 1580 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh-----hhHH----HHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            345788999999999999887652     1111    112333   4566778888888888888877764

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=81.30  E-value=36  Score=30.29  Aligned_cols=105  Identities=21%  Similarity=0.334  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHh----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy11615         50 HVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEG----LQRAELDLANLQKELERARQEQENAASEKIKLERR  125 (224)
Q Consensus        50 ~wKDi~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~----Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~k  125 (224)
                      -+..++.+++=+|+-     .-.+...+..-+.++.++-+.    |.++|.||.||.++.++..+.-..-   | .-|..
T Consensus        45 i~~e~Ek~i~~~i~e-----~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~---k-~NEE~  115 (207)
T PF05010_consen   45 IMEEYEKTIAQMIEE-----KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY---K-KNEET  115 (207)
T ss_pred             HHHHHHHHHHHHHHH-----HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---H-HhHHH
Confidence            344555655555544     334455666777788777665    4789999999999999988752222   1 12333


Q ss_pred             HHHH----h-hhhcccccccccccchhHHHHHHHHHHHHHHHH
Q psy11615        126 LQEH----Q-ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNE  163 (224)
Q Consensus       126 l~~~----~-~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~a  163 (224)
                      |+..    . .-..+..|...+...++..+....+|+++||..
T Consensus       116 Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~  158 (207)
T PF05010_consen  116 LKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSK  158 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3321    1 123334555555556666666666777776654

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PRK11677 hypothetical protein; Provisional

Probab=81.28  E-value=17  Score=30.33  Aligned_cols=50  Identities=12%  Similarity=0.166  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy11615         54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELER  107 (224)
Q Consensus        54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~  107 (224)
                      +.++.+||++|+|++++..=+++.+ +-.++-++|   ..++..|++-+.++..
T Consensus         5 ~a~i~livG~iiG~~~~R~~~~~~~-~q~~le~eL---e~~k~ele~YkqeV~~   54 (134)
T PRK11677          5 YALIGLVVGIIIGAVAMRFGNRKLR-QQQALQYEL---EKNKAELEEYRQELVS   54 (134)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhh-HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            3344444444455544444344433 334444433   3444455555555444

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.36  E-value=13  Score=38.63  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccc
Q psy11615         77 SQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDAS  137 (224)
Q Consensus        77 Sk~hl~~Mmkdle~L-q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~  137 (224)
                      ....+.+|+.+|+.. ...|+...++.+.+.++++.++....++..|+++.+..+ .++.+|.
T Consensus       514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~  576 (782)
T PRK00409        514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ  576 (782)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788888888887 556777777777777777777777777777776666543 3444443

>COG1422 Predicted membrane protein [Function unknown]

Probab=80.22  E-value=5.3  Score=35.70  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy11615         54 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEK  119 (224)
Q Consensus        54 i~Lv~slviavgGcWfAy~Qnr~Sk~hl~~Mmkdle~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK  119 (224)
                      ..+++++...+.|..+-+.|         +..-|-|.+++...-..++|++.++|++.+..-..+|
T Consensus        46 p~lvilV~avi~gl~~~i~~---------~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkk  102 (201)
T COG1422          46 PHLVILVAAVITGLYITILQ---------KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKK  102 (201)
T ss_pred             cHHHHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            35677777778888887766         4567888888888899999999999998666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
3teq_A	101	Crystal Structure Of Soar Domain Length = 101		5e-06
3teq_A	101	Crystal Structure Of Soar Domain Length = 101		5e-04

>pdb|3TEQ|A Chain A, Crystal Structure Of Soar Domain Length = 101

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 7  AEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVD 44
          AEKQL  A+E  EK++KKR++L G F   H  S+DDVD
Sbjct: 26 AEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVD 63

>pdb|3TEQ|A Chain A, Crystal Structure Of Soar Domain Length = 101

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 179 PPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E 
Sbjct: 1   PEALQKWLQLTHEVEVQYYNIKKQNAEKQLMVAKEG 36

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
3ter_A	136	Mammalian stromal interaction molecule-1; dimer, m	1e-15
3ter_A	136	Mammalian stromal interaction molecule-1; dimer, m	4e-06
3teq_A	101	Stromal interaction molecule 1; signaling protein;	2e-09
3teq_A	101	Stromal interaction molecule 1; signaling protein;	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans} Length = 136

 Score = 70.1 bits (171), Expect = 1e-15
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 154 KQEIELLRNELQRAEGELEDRC--WAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQA 211
             E+E LR +L+ AE  LE        P  LQ  L+ T E E     K++    K++++A
Sbjct: 5   HTEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEA 64

Query: 212 REA 214
            E 
Sbjct: 65  IEM 67

>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans} Length = 136

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 6  MAEKQLQQAREACEKLRKKRSSLVGAFVSTHG--KSIDDVDR 45
             K++++A E  ++L+KK+ S++ +     G   + D VD 
Sbjct: 56 DCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDS 97

>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens} Length = 101

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 6  MAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDR 45
           AEKQL  A+E  EK++KKR++L G F   H  S+DDVD 
Sbjct: 25 NAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDH 64

>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens} Length = 101

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 179 PPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREA 214
           P  LQ WLQLTHE+E + Y  KK  AEKQL  A+E 
Sbjct: 1   PEALQKWLQLTHEVEVQYYNIKKQNAEKQLMVAKEG 36

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 27/143 (18%), Positives = 62/143 (43%), Gaps = 4/143 (2%)

Query: 72   RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE-QENAASEKIKLERRLQEHQ 130
            ++++  ++ +  +  ++   +    +L  L+ + E    E +     E+   +   +  +
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063

Query: 131  ALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTH 190
             L+G++SDL    A    ++ +LK ++     ELQ A   LED        L+   +L  
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123

Query: 191  EIENKAYVKKKLMAEKQLQQARE 213
             I +   +++ L +EK  +   E
Sbjct: 1124 HISD---LQEDLESEKAARNKAE 1143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 36/252 (14%), Positives = 71/252 (28%), Gaps = 75/252 (29%)

Query: 5   FMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVDRNSTSHVKDYILGTLILIAL 64
            M++  +         L  K+  +V  FV       ++V R       +Y          
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLR------INY---------- 91

Query: 65  TICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLER 124
              + +   K   +Q        +E   R   D     K    +R +      + +    
Sbjct: 92  --KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALL--- 145

Query: 125 RLQEHQ--ALQGDASDLKSSSAFSDLEVCQ----------------LKQE------IELL 160
            L+  +   + G     K+  A   L+VC                 LK        +E+L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 161 RNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQA-------RE 213
           +  L + +     R         H   +   I +     ++L+  K  +         + 
Sbjct: 203 QKLLYQIDPNWTSRS-------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 214 AR----FDRGKC 221
           A+    F+   C
Sbjct: 256 AKAWNAFN-LSC 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3ter_A	136	Mammalian stromal interaction molecule-1; dimer, m	99.94
3teq_A	101	Stromal interaction molecule 1; signaling protein;	99.73
3teq_A	101	Stromal interaction molecule 1; signaling protein;	99.72
3ter_A	136	Mammalian stromal interaction molecule-1; dimer, m	99.65
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	91.14
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.25
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.85
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.76
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	83.75
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	83.31
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	80.96
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	80.38

>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}

Probab=99.94  E-value=8e-28  Score=196.83  Aligned_cols=68  Identities=31%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhhhhh--cCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcccc
Q psy11615        155 QEIELLRNELQRAEGELED--RCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKCI  222 (224)
Q Consensus       155 eELe~vR~aL~~AE~eLe~--~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~~  222 (224)
                      +|||+||++|++||++|++  +||+||++||+|||+|||+|++|||+||++|++||.+|||+||||+||=
T Consensus         6 ~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKr   75 (136)
T 3ter_A            6 TEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQ   75 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhh
Confidence            6999999999999999987  4999999999999999999999999999999999999999999999983

>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=135.18  Aligned_cols=43  Identities=51%  Similarity=0.600  Sum_probs=42.6

Q ss_pred             ChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhccc
Q psy11615        179 PPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGKC  221 (224)
Q Consensus       179 P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK~  221 (224)
                      |++||+|||+|||+|++|||+||++|++||.+|+|+||||+||
T Consensus         1 p~~Lq~wLq~T~e~E~q~~~~kk~~aekql~~A~e~~eKl~KK   43 (101)
T 3teq_A            1 PEALQKWLQLTHEVEVQYYNIKKQNAEKQLMVAKEGAEKIKKK   43 (101)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998

>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}

Probab=99.72  E-value=2.1e-19  Score=140.96  Aligned_cols=56  Identities=41%  Similarity=0.521  Sum_probs=53.2

Q ss_pred             hchHHHHHHHHHHHHHHhcccccccchhhhhcccccccCC-----------------CCCCchhHHHHHHHHH
Q psy11615          5 FMAEKQLQQAREACEKLRKKRSSLVGAFVSTHGKSIDDVD-----------------RNSTSHVKDYILGTLI   60 (224)
Q Consensus         5 ~~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~~s~D~VD-----------------Rer~~~wKDi~Lv~sl   60 (224)
                      .+|++||.+|+|+||||+|||+||||||+++||+++|+||                 +++++||++|+.++++
T Consensus        24 ~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l~gf   96 (101)
T 3teq_A           24 QNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEILTGF   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999999999999999999999                 5999999999998864

>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}

Probab=99.65  E-value=3.6e-18  Score=139.86  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             hchHHHHHHHHHHHHHHhcccccccchhhhhcc--cccccCC-----------------CCCCchhHHHHHHHHHH
Q psy11615          5 FMAEKQLQQAREACEKLRKKRSSLVGAFVSTHG--KSIDDVD-----------------RNSTSHVKDYILGTLIL   61 (224)
Q Consensus         5 ~~a~~ql~~a~e~~eki~kKr~s~~gsf~~aH~--~s~D~VD-----------------Rer~~~wKDi~Lv~slv   61 (224)
                      .+|++||.+|+|+||||+|||+||||||++|||  +++|+||                 +++++||++|+.++++-
T Consensus        55 ~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~LcgF~  130 (136)
T 3ter_A           55 QDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESLCGFP  130 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            479999999999999999999999999999999  9999999                 59999999999988753

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=91.14  E-value=0.082  Score=50.77  Aligned_cols=60  Identities=25%  Similarity=0.315  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy11615        116 ASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIELLRNELQRAEGELEDRCWAP  178 (224)
Q Consensus       116 ~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~l~eELe~vR~aL~~AE~eLe~~~ws~  178 (224)
                      ..||..|++++++   +..++.+|.+-..-.+-|..+|++++..+|.++.+|..+|..-.-+|
T Consensus       404 ~~e~~~l~~~~~~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~~~  463 (575)
T 2i1j_A          404 AAERQKLEDEIRA---KQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQ  463 (575)
T ss_dssp             -----------------------------------------CHHHHHHHHHHHHHHHTTSCCG
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4445555555555   66667777765566666888888999999999999998887644444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.25  E-value=6.5  Score=33.44  Aligned_cols=67  Identities=10%  Similarity=0.183  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHHHHHHHHHhhcc
Q psy11615        147 DLEVCQLKQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQQAREARFDRGK  220 (224)
Q Consensus       147 d~Els~l~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~~AkE~~EKikK  220 (224)
                      +.++.+++.++..++..+.+.+..|..  -+.|-.++.   +++|+|  +.......++..+..+-+..|.+++
T Consensus        59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~--v~~~kE~~a---L~kEie--~~~~~i~~lE~eile~~e~ie~~~~  125 (256)
T 3na7_A           59 KLQVSKNEQTLQDTNAKIASIQKKMSE--IKSERELRS---LNIEED--IAKERSNQANREIENLQNEIKRKSE  125 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSSHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446667778888888888888877753  224544443   455555  4556666677776666666655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.85  E-value=4.3  Score=41.83  Aligned_cols=77  Identities=23%  Similarity=0.364  Sum_probs=40.9

Q ss_pred             HHHHHHHhhHhHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccccccccchhHHHHH
Q psy11615         80 HLRRMMKDMEGLQRAELD-------LANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQ  152 (224)
Q Consensus        80 hl~~Mmkdle~Lq~AE~s-------l~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~~ak~ea~rl~~~r~~sd~Els~  152 (224)
                      .+..|-+|++.|+..+..       ..+|++++++.+++......||..+|++..+.   +   .+|.       ..++.
T Consensus       961 e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~---~---~~L~-------~kv~~ 1027 (1080)
T 2dfs_A          961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY---K---HETE-------QLVSE 1027 (1080)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHH-------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHH-------HHHHH
Confidence            344454555554443333       44556666666666666666666666655441   1   1111       24555


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy11615        153 LKQEIELLRNELQRAEG  169 (224)
Q Consensus       153 l~eELe~vR~aL~~AE~  169 (224)
                      |+.|...+|.++...|.
T Consensus      1028 L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1028 LKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666666665553

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.76  E-value=10  Score=31.83  Aligned_cols=88  Identities=16%  Similarity=0.259  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccccccchhHHHHHHH
Q psy11615         77 SQQHLRRMMKDME-GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKSSSAFSDLEVCQLK  154 (224)
Q Consensus        77 Sk~hl~~Mmkdle-~Lq~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~~r~~sd~Els~l~  154 (224)
                      +-.-+++...+|. .++.+|..+.|||.++-.++...-....+..+|.-.|..|- +...-.++..++    ++-++-|.
T Consensus        28 ~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~el----q~ri~~L~  103 (168)
T 3o0z_A           28 TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDL----QARITSLQ  103 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            3445666777776 67888999999999998888766666666666665555432 111112212221    22344578


Q ss_pred             HHHHHHHHHHHHHH
Q psy11615        155 QEIELLRNELQRAE  168 (224)
Q Consensus       155 eELe~vR~aL~~AE  168 (224)
                      +||+.+|..+.+++
T Consensus       104 ~El~~~k~~~~k~~  117 (168)
T 3o0z_A          104 EEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999999888886

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=83.75  E-value=6  Score=40.81  Aligned_cols=82  Identities=22%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhcccccccc---cccchhHHHHHHHHHHHHHHHHHHHH
Q psy11615         92 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ-ALQGDASDLKS---SSAFSDLEVCQLKQEIELLRNELQRA  167 (224)
Q Consensus        92 q~AE~sl~dlQ~~Le~aqee~~~v~~EK~~LE~kl~~~~-~ak~ea~rl~~---~r~~sd~Els~l~eELe~vR~aL~~A  167 (224)
                      ...|..+.+||.+|+...+++..-..++.+++.++.+++ ..+.+-..+..   --..++..+..|++|++.++.++.++
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666788888888877777766666665555554442 12111111111   00123456677788888888888888


Q ss_pred             Hhhhhh
Q psy11615        168 EGELED  173 (224)
Q Consensus       168 E~eLe~  173 (224)
                      .++.+.
T Consensus      1004 ~ke~~~ 1009 (1080)
T 2dfs_A         1004 QTEKKT 1009 (1080)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=83.31  E-value=15  Score=28.97  Aligned_cols=52  Identities=19%  Similarity=0.172  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCChhhHHHHhhHHHHHHHHHHHhHhhHHHHHH
Q psy11615        154 KQEIELLRNELQRAEGELEDRCWAPPPGLQHWLQLTHEIENKAYVKKKLMAEKQLQ  209 (224)
Q Consensus       154 ~eELe~vR~aL~~AE~eLe~~~ws~P~~LQ~wLQlT~EvE~q~y~~Kk~~AekQL~  209 (224)
                      +.+|...|..|+.|++..+-.    |+.+++=-=-.-..+|..|..|=..-.+||.
T Consensus        48 E~QL~iArQKLkdAe~~~E~D----PDevNK~tl~~R~~~Vsalq~KiaeLKrqLA   99 (107)
T 2k48_A           48 EQQLVTARQKLKDAEKAVEVD----PDDVNKSTLQNRRAAVSTLETKLGELKRQLA   99 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555544432    4444433222233344444444333333333

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=80.96  E-value=17  Score=29.76  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCC--ChhhHH--HHhhHHHHHHHHHHHhHhhHHHHHHHHH
Q psy11615        149 EVCQLKQEIELLRNELQRAEGELEDRCWAP--PPGLQH--WLQLTHEIENKAYVKKKLMAEKQLQQAR  212 (224)
Q Consensus       149 Els~l~eELe~vR~aL~~AE~eLe~~~ws~--P~~LQ~--wLQlT~EvE~q~y~~Kk~~AekQL~~Ak  212 (224)
                      .+++++.||.|+...++++..+....+-.|  |.+.++  -++-.++-|-.-.--+|.....|+.+..
T Consensus        37 ~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~  104 (150)
T 4dci_A           37 GIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR  104 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566678899999999999999887654333  333333  4777888888887777777777777654

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=80.38  E-value=2.9  Score=35.95  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q psy11615        150 VCQLKQEIELLRNELQRAEGELEDRCWAPP  179 (224)
Q Consensus       150 ls~l~eELe~vR~aL~~AE~eLe~~~ws~P  179 (224)
                      +..++.++.+.+.+|..|+..|+...-.+|
T Consensus       131 ~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP  160 (369)
T 4dk0_A          131 MDVVQENIKQAEIEVNTAETNLGYTKITSP  160 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSSCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCEEECC
Confidence            333455566666666666666655444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00